Query 005381
Match_columns 699
No_of_seqs 542 out of 4283
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 22:33:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0529 Protein geranylgeranyl 100.0 4.4E-64 9.5E-69 523.8 25.7 409 1-509 1-420 (421)
2 KOG0530 Protein farnesyltransf 100.0 3.6E-42 7.8E-47 338.5 14.3 207 8-233 26-233 (318)
3 COG5536 BET4 Protein prenyltra 100.0 8.8E-40 1.9E-44 323.8 15.8 226 1-233 3-239 (328)
4 PLN02789 farnesyltranstransfer 100.0 1.2E-37 2.6E-42 331.2 21.1 207 10-233 22-229 (320)
5 PLN02789 farnesyltranstransfer 99.9 2E-25 4.3E-30 237.7 21.0 176 38-232 85-266 (320)
6 KOG0529 Protein geranylgeranyl 99.9 3.3E-24 7.2E-29 225.0 12.2 137 41-187 91-241 (421)
7 KOG0530 Protein farnesyltransf 99.9 1E-21 2.2E-26 194.4 12.6 136 88-235 60-195 (318)
8 COG5536 BET4 Protein prenyltra 99.7 3.1E-17 6.7E-22 163.9 11.7 136 42-187 91-239 (328)
9 KOG0444 Cytoskeletal regulator 99.6 1.8E-16 3.9E-21 172.6 -1.3 159 404-614 48-209 (1255)
10 PF14580 LRR_9: Leucine-rich r 99.5 3.3E-15 7.1E-20 145.2 3.3 126 536-699 22-151 (175)
11 KOG0444 Cytoskeletal regulator 99.5 4.6E-15 1E-19 161.7 0.6 258 407-695 96-369 (1255)
12 KOG4194 Membrane glycoprotein 99.4 3.3E-14 7.2E-19 154.6 2.5 157 476-643 211-379 (873)
13 KOG4194 Membrane glycoprotein 99.4 1.5E-14 3.2E-19 157.3 -1.7 126 538-674 298-428 (873)
14 TIGR00990 3a0801s09 mitochondr 99.3 9.8E-11 2.1E-15 137.0 20.6 170 41-236 310-482 (615)
15 TIGR00990 3a0801s09 mitochondr 99.3 1.5E-10 3.2E-15 135.5 21.7 163 36-225 343-505 (615)
16 KOG1259 Nischarin, modulator o 99.3 8.5E-13 1.8E-17 133.8 0.7 159 476-697 274-438 (490)
17 PF07711 RabGGT_insert: Rab ge 99.2 9.1E-12 2E-16 105.4 4.6 93 259-394 4-99 (102)
18 PRK15359 type III secretion sy 99.2 2.5E-10 5.4E-15 108.3 14.4 126 46-188 14-139 (144)
19 PRK15359 type III secretion sy 99.2 3.5E-10 7.5E-15 107.2 13.5 125 92-233 14-138 (144)
20 PLN00113 leucine-rich repeat r 99.2 1.9E-11 4.2E-16 150.3 5.2 198 475-695 153-363 (968)
21 KOG0472 Leucine-rich repeat pr 99.1 3.8E-12 8.3E-17 133.6 -2.3 211 408-674 88-309 (565)
22 PRK12370 invasion protein regu 99.1 2.4E-09 5.3E-14 123.6 20.6 179 42-237 278-457 (553)
23 PLN00113 leucine-rich repeat r 99.1 1.2E-10 2.7E-15 143.2 9.0 141 538-694 145-290 (968)
24 KOG0617 Ras suppressor protein 99.1 1.1E-11 2.5E-16 116.7 -1.0 78 538-617 38-117 (264)
25 PRK11189 lipoprotein NlpI; Pro 99.1 6.4E-09 1.4E-13 110.6 18.9 175 39-237 78-252 (296)
26 PRK11189 lipoprotein NlpI; Pro 99.1 5.2E-09 1.1E-13 111.3 18.1 164 41-233 42-211 (296)
27 KOG0618 Serine/threonine phosp 99.0 1.1E-10 2.4E-15 133.7 3.1 209 427-674 272-488 (1081)
28 PRK12370 invasion protein regu 99.0 1.6E-08 3.4E-13 117.0 20.7 162 42-229 321-483 (553)
29 KOG0617 Ras suppressor protein 99.0 2.1E-11 4.6E-16 114.9 -2.8 122 538-674 61-185 (264)
30 KOG0472 Leucine-rich repeat pr 99.0 2.2E-11 4.8E-16 128.0 -3.1 239 427-695 17-282 (565)
31 KOG1126 DNA-binding cell divis 98.9 3.3E-09 7.1E-14 118.1 11.1 182 38-246 435-616 (638)
32 PRK09782 bacteriophage N4 rece 98.9 4.7E-08 1E-12 118.6 21.8 168 35-230 553-720 (987)
33 TIGR02521 type_IV_pilW type IV 98.9 1.9E-07 4.1E-12 93.1 22.8 175 32-233 39-215 (234)
34 KOG4626 O-linked N-acetylgluco 98.9 3.2E-08 6.9E-13 108.9 17.4 170 35-231 331-500 (966)
35 KOG0532 Leucine-rich repeat (L 98.9 2.8E-10 6E-15 124.5 1.2 159 429-674 85-246 (722)
36 KOG1126 DNA-binding cell divis 98.9 1E-08 2.3E-13 114.2 13.3 157 37-220 468-624 (638)
37 KOG4626 O-linked N-acetylgluco 98.9 1.7E-08 3.7E-13 111.0 13.7 183 35-232 127-331 (966)
38 KOG0618 Serine/threonine phosp 98.9 2.9E-10 6.4E-15 130.3 -0.4 191 479-695 257-483 (1081)
39 PRK15174 Vi polysaccharide exp 98.9 8.8E-08 1.9E-12 112.8 19.7 164 35-221 223-386 (656)
40 PF14580 LRR_9: Leucine-rich r 98.8 1.3E-09 2.8E-14 106.2 3.2 81 538-618 47-129 (175)
41 PRK15174 Vi polysaccharide exp 98.8 2.5E-07 5.5E-12 109.0 22.1 190 34-237 120-334 (656)
42 TIGR02917 PEP_TPR_lipo putativ 98.8 2.8E-07 6E-12 110.8 22.8 182 32-228 30-268 (899)
43 KOG0547 Translocase of outer m 98.8 5.2E-07 1.1E-11 97.4 19.7 175 34-234 125-441 (606)
44 TIGR02917 PEP_TPR_lipo putativ 98.8 7.5E-07 1.6E-11 107.1 23.4 165 36-227 137-301 (899)
45 PRK09782 bacteriophage N4 rece 98.7 4.8E-07 1E-11 110.0 20.9 174 36-238 521-694 (987)
46 PRK11447 cellulose synthase su 98.7 7.5E-07 1.6E-11 111.7 22.0 190 34-238 279-512 (1157)
47 TIGR03302 OM_YfiO outer membra 98.7 8.8E-07 1.9E-11 90.5 17.4 167 26-218 35-234 (235)
48 TIGR02552 LcrH_SycD type III s 98.7 6.1E-07 1.3E-11 83.2 14.4 126 46-185 4-129 (135)
49 PRK10370 formate-dependent nit 98.6 8.3E-07 1.8E-11 88.8 16.2 126 85-223 53-180 (198)
50 KOG3207 Beta-tubulin folding c 98.6 1.4E-08 3.1E-13 108.4 3.5 196 480-698 140-364 (505)
51 KOG1859 Leucine-rich repeat pr 98.6 1.2E-09 2.6E-14 122.2 -4.8 122 538-698 192-321 (1096)
52 KOG4237 Extracellular matrix p 98.6 5.4E-09 1.2E-13 110.2 0.2 88 573-674 270-358 (498)
53 PRK10370 formate-dependent nit 98.6 9E-07 1.9E-11 88.5 15.6 121 42-176 56-179 (198)
54 PRK15387 E3 ubiquitin-protein 98.6 4.3E-08 9.3E-13 115.3 7.0 111 538-675 347-458 (788)
55 KOG1644 U2-associated snRNP A' 98.6 1.7E-08 3.6E-13 98.1 2.8 127 536-699 22-151 (233)
56 TIGR02552 LcrH_SycD type III s 98.6 7.4E-07 1.6E-11 82.7 13.8 128 92-233 4-131 (135)
57 KOG0553 TPR repeat-containing 98.6 4.6E-07 1E-11 93.1 12.7 105 35-153 92-196 (304)
58 PF01239 PPTA: Protein prenylt 98.6 6.9E-08 1.5E-12 66.3 4.2 27 90-116 2-28 (31)
59 PRK11447 cellulose synthase su 98.6 5.5E-06 1.2E-10 104.0 23.6 70 34-116 471-540 (1157)
60 KOG1125 TPR repeat-containing 98.5 2.6E-06 5.6E-11 94.1 17.6 180 33-238 294-559 (579)
61 PRK11788 tetratricopeptide rep 98.5 4.5E-06 9.7E-11 91.7 19.6 176 34-236 45-229 (389)
62 PRK15179 Vi polysaccharide bio 98.5 2.9E-06 6.3E-11 99.5 18.7 131 36-181 98-228 (694)
63 PRK15179 Vi polysaccharide bio 98.5 5.8E-06 1.3E-10 97.1 21.0 157 41-223 68-224 (694)
64 PRK15370 E3 ubiquitin-protein 98.5 8.3E-08 1.8E-12 113.3 5.5 73 538-618 267-341 (754)
65 KOG0532 Leucine-rich repeat (L 98.5 5.5E-09 1.2E-13 114.5 -4.2 139 538-698 103-246 (722)
66 PF01239 PPTA: Protein prenylt 98.5 1.3E-07 2.9E-12 64.9 4.1 31 124-154 1-31 (31)
67 KOG1155 Anaphase-promoting com 98.5 4.5E-06 9.8E-11 89.9 17.4 136 41-190 346-481 (559)
68 KOG1155 Anaphase-promoting com 98.5 1.9E-05 4.1E-10 85.3 22.0 140 82-235 341-480 (559)
69 PRK15370 E3 ubiquitin-protein 98.5 2.1E-07 4.6E-12 109.9 7.7 74 538-619 246-321 (754)
70 TIGR02521 type_IV_pilW type IV 98.5 2.4E-05 5.3E-10 77.8 21.4 156 35-217 76-233 (234)
71 PF13855 LRR_8: Leucine rich r 98.5 6.5E-08 1.4E-12 77.5 2.1 59 555-614 1-61 (61)
72 KOG0553 TPR repeat-containing 98.5 8.7E-07 1.9E-11 91.2 10.8 102 85-188 95-196 (304)
73 PRK15387 E3 ubiquitin-protein 98.5 4.5E-07 9.9E-12 106.8 9.7 33 538-572 287-319 (788)
74 PRK11788 tetratricopeptide rep 98.5 2.1E-05 4.6E-10 86.3 22.3 126 35-175 118-248 (389)
75 PLN03088 SGT1, suppressor of 98.4 2.9E-06 6.3E-11 92.7 15.0 106 31-150 9-114 (356)
76 KOG0547 Translocase of outer m 98.4 5E-06 1.1E-10 90.0 16.1 166 42-231 343-547 (606)
77 PF13429 TPR_15: Tetratricopep 98.4 4.4E-06 9.6E-11 87.9 14.4 144 85-242 124-269 (280)
78 PRK10049 pgaA outer membrane p 98.3 4E-05 8.6E-10 92.2 22.1 133 85-231 324-471 (765)
79 TIGR03302 OM_YfiO outer membra 98.3 2.9E-05 6.3E-10 79.3 17.7 170 55-238 29-220 (235)
80 PF13429 TPR_15: Tetratricopep 98.3 9.6E-06 2.1E-10 85.4 13.9 152 36-214 122-275 (280)
81 cd00116 LRR_RI Leucine-rich re 98.3 2.5E-07 5.4E-12 98.7 1.8 151 538-694 142-313 (319)
82 KOG1259 Nischarin, modulator o 98.3 9.7E-08 2.1E-12 97.5 -1.4 118 476-618 297-415 (490)
83 COG3063 PilF Tfp pilus assembl 98.3 6.6E-05 1.4E-09 74.8 18.1 137 32-183 43-181 (250)
84 KOG2076 RNA polymerase III tra 98.3 3E-05 6.5E-10 89.6 18.0 137 21-172 136-272 (895)
85 PRK10049 pgaA outer membrane p 98.3 3.4E-05 7.3E-10 92.8 19.5 162 29-219 20-181 (765)
86 COG3063 PilF Tfp pilus assembl 98.2 1.5E-05 3.2E-10 79.3 13.2 127 85-225 49-177 (250)
87 KOG2123 Uncharacterized conser 98.2 1.2E-07 2.5E-12 96.2 -2.4 42 658-699 83-128 (388)
88 KOG1859 Leucine-rich repeat pr 98.2 1.9E-07 4.1E-12 105.0 -1.1 119 475-618 176-295 (1096)
89 PLN03088 SGT1, suppressor of 98.2 2.6E-05 5.7E-10 85.1 15.0 102 85-188 16-117 (356)
90 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.6E-11 70.0 3.3 53 537-589 5-61 (61)
91 KOG4237 Extracellular matrix p 98.2 2.7E-07 5.9E-12 97.6 -1.2 125 536-674 70-200 (498)
92 PLN03210 Resistant to P. syrin 98.2 2.1E-06 4.6E-11 107.4 6.4 29 475-503 670-698 (1153)
93 KOG0531 Protein phosphatase 1, 98.1 5.1E-07 1.1E-11 100.7 0.4 112 482-618 91-202 (414)
94 COG4886 Leucine-rich repeat (L 98.1 9.6E-07 2.1E-11 97.7 2.4 74 538-613 145-220 (394)
95 KOG0548 Molecular co-chaperone 98.1 0.00016 3.4E-09 79.7 19.2 157 41-231 314-470 (539)
96 PLN03150 hypothetical protein; 98.1 2.7E-06 5.9E-11 99.6 6.1 78 538-616 423-504 (623)
97 PRK14574 hmsH outer membrane p 98.1 0.00014 3.1E-09 87.1 20.6 176 29-234 39-216 (822)
98 cd00116 LRR_RI Leucine-rich re 98.1 6.4E-07 1.4E-11 95.5 0.7 190 480-695 75-285 (319)
99 KOG2982 Uncharacterized conser 98.1 2.1E-06 4.5E-11 88.0 4.1 194 474-699 59-290 (418)
100 COG4886 Leucine-rich repeat (L 98.1 2.5E-06 5.4E-11 94.4 4.7 154 479-674 132-289 (394)
101 PLN03210 Resistant to P. syrin 98.1 1E-05 2.2E-10 101.4 10.6 23 651-673 790-813 (1153)
102 KOG3060 Uncharacterized conser 98.1 0.00047 1E-08 69.6 19.5 172 30-225 58-229 (289)
103 KOG0531 Protein phosphatase 1, 98.1 1E-06 2.2E-11 98.2 0.8 119 538-674 100-220 (414)
104 KOG0548 Molecular co-chaperone 98.0 8.2E-05 1.8E-09 81.9 14.7 123 42-178 341-463 (539)
105 KOG3060 Uncharacterized conser 98.0 0.0013 2.8E-08 66.5 20.4 161 38-222 25-189 (289)
106 cd05804 StaR_like StaR_like; a 97.9 0.0008 1.7E-08 72.9 20.5 161 34-218 53-217 (355)
107 PF13414 TPR_11: TPR repeat; P 97.9 5.9E-05 1.3E-09 61.4 8.7 68 58-137 2-69 (69)
108 KOG2076 RNA polymerase III tra 97.9 0.00018 4E-09 83.3 14.9 133 85-231 153-291 (895)
109 PF13414 TPR_11: TPR repeat; P 97.8 8.1E-05 1.8E-09 60.6 7.7 67 140-218 3-69 (69)
110 KOG0624 dsRNA-activated protei 97.8 0.0017 3.6E-08 68.1 18.7 196 19-232 36-268 (504)
111 KOG4579 Leucine-rich repeat (L 97.8 1.8E-06 3.9E-11 79.3 -2.6 79 538-618 32-116 (177)
112 KOG1644 U2-associated snRNP A' 97.8 1.5E-05 3.2E-10 77.9 3.5 81 538-618 47-129 (233)
113 KOG0550 Molecular chaperone (D 97.8 0.00036 7.9E-09 74.7 13.8 170 41-236 185-372 (486)
114 PF12799 LRR_4: Leucine Rich r 97.7 2.1E-05 4.5E-10 58.6 2.8 38 555-592 1-39 (44)
115 PLN03150 hypothetical protein; 97.7 3.1E-05 6.7E-10 90.8 5.6 105 556-674 419-527 (623)
116 KOG4234 TPR repeat-containing 97.7 0.0006 1.3E-08 66.5 13.0 99 35-177 106-204 (271)
117 KOG2739 Leucine-rich acidic nu 97.7 1.7E-05 3.8E-10 80.4 2.5 111 552-698 40-153 (260)
118 KOG4162 Predicted calmodulin-b 97.7 0.00065 1.4E-08 77.7 15.0 121 87-220 666-787 (799)
119 PRK02603 photosystem I assembl 97.7 0.00056 1.2E-08 66.6 13.0 117 46-175 20-154 (172)
120 KOG3207 Beta-tubulin folding c 97.7 1.6E-05 3.6E-10 85.4 2.1 133 479-618 165-317 (505)
121 KOG4579 Leucine-rich repeat (L 97.7 6.3E-06 1.4E-10 75.8 -1.1 81 538-620 58-141 (177)
122 PRK02603 photosystem I assembl 97.7 0.00037 8E-09 67.9 11.0 119 100-220 30-153 (172)
123 cd05804 StaR_like StaR_like; a 97.6 0.0021 4.6E-08 69.6 17.9 154 42-221 23-182 (355)
124 PRK11906 transcriptional regul 97.6 0.0014 3E-08 72.2 15.9 158 51-230 240-415 (458)
125 PRK11906 transcriptional regul 97.6 0.0018 3.9E-08 71.3 16.3 135 40-179 273-410 (458)
126 KOG1156 N-terminal acetyltrans 97.6 0.0024 5.1E-08 72.0 17.2 140 26-180 9-148 (700)
127 KOG0624 dsRNA-activated protei 97.6 0.0057 1.2E-07 64.3 18.8 138 39-189 86-237 (504)
128 cd00189 TPR Tetratricopeptide 97.6 0.0011 2.3E-08 54.8 11.5 99 107-219 2-100 (100)
129 cd00189 TPR Tetratricopeptide 97.6 0.00075 1.6E-08 55.8 10.5 98 61-172 2-99 (100)
130 KOG1125 TPR repeat-containing 97.6 0.00078 1.7E-08 75.0 12.9 104 85-190 444-557 (579)
131 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0018 3.9E-08 57.8 13.2 100 28-141 6-111 (119)
132 KOG1909 Ran GTPase-activating 97.5 2.2E-05 4.7E-10 82.5 0.2 75 407-498 29-104 (382)
133 KOG4162 Predicted calmodulin-b 97.5 0.0017 3.6E-08 74.5 14.4 125 38-175 663-788 (799)
134 PRK10153 DNA-binding transcrip 97.5 0.0048 1E-07 70.6 18.4 147 53-222 331-488 (517)
135 PRK14574 hmsH outer membrane p 97.5 0.0056 1.2E-07 73.6 19.6 136 36-189 80-217 (822)
136 PRK15363 pathogenicity island 97.5 0.0026 5.7E-08 60.5 13.4 82 87-170 51-132 (157)
137 CHL00033 ycf3 photosystem I as 97.4 0.0037 8E-08 60.5 14.2 134 86-221 14-154 (168)
138 KOG0495 HAT repeat protein [RN 97.4 0.0069 1.5E-07 68.4 17.5 180 42-235 668-867 (913)
139 KOG1909 Ran GTPase-activating 97.4 2.3E-05 4.9E-10 82.3 -1.6 69 550-618 87-173 (382)
140 PF12799 LRR_4: Leucine Rich r 97.4 6.6E-05 1.4E-09 55.9 1.2 40 577-618 1-40 (44)
141 KOG2002 TPR-containing nuclear 97.3 0.011 2.3E-07 69.7 18.8 179 41-233 546-762 (1018)
142 PRK15363 pathogenicity island 97.3 0.0028 6E-08 60.4 11.4 102 102-217 32-133 (157)
143 COG4783 Putative Zn-dependent 97.2 0.018 3.8E-07 63.5 18.3 121 56-190 303-423 (484)
144 CHL00033 ycf3 photosystem I as 97.2 0.0045 9.6E-08 59.9 12.6 120 43-175 17-154 (168)
145 PF13432 TPR_16: Tetratricopep 97.2 0.0013 2.9E-08 52.7 7.4 53 86-139 12-64 (65)
146 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.008 1.7E-07 53.6 13.4 90 86-177 17-112 (119)
147 KOG1127 TPR repeat-containing 97.2 0.0041 9E-08 73.0 13.8 160 41-226 474-635 (1238)
148 PF13432 TPR_16: Tetratricopep 97.2 0.00098 2.1E-08 53.5 6.3 62 31-105 4-65 (65)
149 KOG1156 N-terminal acetyltrans 97.2 0.0041 8.8E-08 70.2 13.0 127 85-225 21-147 (700)
150 KOG1173 Anaphase-promoting com 97.2 0.012 2.6E-07 65.6 16.1 179 38-231 326-533 (611)
151 TIGR00540 hemY_coli hemY prote 97.1 0.038 8.2E-07 61.6 20.3 184 35-234 164-383 (409)
152 PRK10153 DNA-binding transcrip 97.1 0.011 2.4E-07 67.7 16.0 128 42-176 359-488 (517)
153 COG4783 Putative Zn-dependent 97.0 0.075 1.6E-06 58.7 20.3 119 31-163 313-431 (484)
154 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0027 5.9E-08 69.8 9.3 70 54-136 70-142 (453)
155 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.0032 6.8E-08 69.3 8.9 74 100-175 70-146 (453)
156 KOG2002 TPR-containing nuclear 96.9 0.0098 2.1E-07 70.0 13.2 136 41-190 628-765 (1018)
157 KOG0550 Molecular chaperone (D 96.9 0.0045 9.8E-08 66.6 9.6 138 56-219 166-319 (486)
158 KOG1127 TPR repeat-containing 96.9 0.011 2.5E-07 69.4 13.5 139 33-186 11-165 (1238)
159 PRK14720 transcript cleavage f 96.9 0.015 3.3E-07 69.7 14.8 156 53-223 25-205 (906)
160 KOG1173 Anaphase-promoting com 96.8 0.028 6.2E-07 62.7 15.4 167 41-233 294-501 (611)
161 KOG2739 Leucine-rich acidic nu 96.8 0.00065 1.4E-08 69.2 2.6 80 538-617 48-131 (260)
162 TIGR00540 hemY_coli hemY prote 96.8 0.039 8.5E-07 61.5 16.7 141 47-214 247-397 (409)
163 PRK14720 transcript cleavage f 96.8 0.026 5.6E-07 67.8 15.5 142 26-172 32-180 (906)
164 PRK10803 tol-pal system protei 96.7 0.025 5.4E-07 59.1 13.7 93 36-142 155-253 (263)
165 PRK10747 putative protoheme IX 96.7 0.1 2.2E-06 58.0 19.4 159 34-222 163-363 (398)
166 KOG1174 Anaphase-promoting com 96.7 0.083 1.8E-06 57.1 17.1 146 85-233 314-517 (564)
167 KOG4234 TPR repeat-containing 96.7 0.0095 2.1E-07 58.4 9.3 92 120-224 109-205 (271)
168 PF12895 Apc3: Anaphase-promot 96.7 0.0059 1.3E-07 51.8 7.0 75 87-164 5-81 (84)
169 PF13371 TPR_9: Tetratricopept 96.6 0.0078 1.7E-07 49.3 7.4 61 36-109 7-67 (73)
170 KOG4658 Apoptotic ATPase [Sign 96.6 0.0015 3.3E-08 79.0 4.2 81 536-618 526-611 (889)
171 PF12895 Apc3: Anaphase-promot 96.6 0.0068 1.5E-07 51.4 6.6 80 120-213 3-84 (84)
172 PF12569 NARP1: NMDA receptor- 96.6 0.065 1.4E-06 61.3 16.4 163 36-222 50-263 (517)
173 KOG1128 Uncharacterized conser 96.5 0.017 3.7E-07 66.2 11.2 117 84-214 498-614 (777)
174 PF13371 TPR_9: Tetratricopept 96.5 0.012 2.6E-07 48.1 7.6 56 86-142 10-65 (73)
175 KOG1174 Anaphase-promoting com 96.5 0.077 1.7E-06 57.3 15.1 161 37-224 245-405 (564)
176 KOG3665 ZYG-1-like serine/thre 96.4 0.0024 5.3E-08 75.3 4.1 156 484-692 120-279 (699)
177 PRK10747 putative protoheme IX 96.3 0.65 1.4E-05 51.6 22.0 188 35-236 129-343 (398)
178 KOG2376 Signal recognition par 96.2 0.17 3.7E-06 57.0 16.4 130 26-177 14-146 (652)
179 PF06552 TOM20_plant: Plant sp 96.1 0.03 6.6E-07 54.3 9.1 98 42-141 8-115 (186)
180 PRK10803 tol-pal system protei 96.1 0.09 1.9E-06 55.0 13.5 90 86-177 158-253 (263)
181 KOG1129 TPR repeat-containing 96.1 0.069 1.5E-06 56.1 12.1 167 41-233 272-441 (478)
182 PF09295 ChAPs: ChAPs (Chs5p-A 96.0 0.14 3E-06 56.6 15.0 68 88-156 217-284 (395)
183 KOG0543 FKBP-type peptidyl-pro 96.0 0.069 1.5E-06 57.8 12.0 85 87-172 273-357 (397)
184 KOG0543 FKBP-type peptidyl-pro 96.0 0.15 3.2E-06 55.3 14.5 78 110-189 262-339 (397)
185 PF14559 TPR_19: Tetratricopep 96.0 0.018 3.9E-07 46.4 5.9 62 36-110 3-64 (68)
186 KOG2003 TPR repeat-containing 95.9 0.14 3.1E-06 55.6 13.8 177 34-234 429-605 (840)
187 PF06552 TOM20_plant: Plant sp 95.9 0.051 1.1E-06 52.8 9.5 102 124-226 9-119 (186)
188 COG5010 TadD Flp pilus assembl 95.9 0.48 1E-05 48.6 16.8 168 43-237 51-218 (257)
189 KOG2982 Uncharacterized conser 95.9 0.0035 7.7E-08 64.9 1.6 81 538-618 76-162 (418)
190 COG5010 TadD Flp pilus assembl 95.8 0.6 1.3E-05 47.9 17.1 141 35-190 77-217 (257)
191 PF14559 TPR_19: Tetratricopep 95.8 0.029 6.3E-07 45.1 6.4 59 85-144 5-63 (68)
192 COG5238 RNA1 Ran GTPase-activa 95.7 0.008 1.7E-07 61.6 3.1 120 550-674 87-226 (388)
193 COG0457 NrfG FOG: TPR repeat [ 95.7 2 4.3E-05 40.6 20.5 164 42-231 76-246 (291)
194 COG0457 NrfG FOG: TPR repeat [ 95.7 0.9 2E-05 43.1 17.6 152 42-219 112-268 (291)
195 KOG2123 Uncharacterized conser 95.6 0.0012 2.6E-08 67.7 -3.0 95 516-617 9-103 (388)
196 KOG3665 ZYG-1-like serine/thre 95.5 0.0089 1.9E-07 70.6 3.0 106 552-696 145-258 (699)
197 PF12688 TPR_5: Tetratrico pep 95.4 0.27 5.9E-06 45.0 12.0 96 106-215 2-103 (120)
198 COG4235 Cytochrome c biogenesi 95.3 0.43 9.2E-06 50.0 14.3 122 42-176 139-262 (287)
199 KOG0495 HAT repeat protein [RN 95.2 1.5 3.2E-05 50.4 18.8 184 37-235 597-801 (913)
200 KOG3763 mRNA export factor TAP 95.2 0.0094 2E-07 66.5 1.8 40 659-698 267-311 (585)
201 KOG4658 Apoptotic ATPase [Sign 95.1 0.0091 2E-07 72.4 1.7 75 538-614 550-630 (889)
202 COG4235 Cytochrome c biogenesi 94.9 0.83 1.8E-05 47.9 15.2 124 86-222 137-262 (287)
203 KOG1128 Uncharacterized conser 94.8 0.29 6.2E-06 56.6 12.4 118 37-169 498-615 (777)
204 KOG0376 Serine-threonine phosp 94.7 0.045 9.7E-07 60.4 5.5 88 87-176 20-107 (476)
205 PF13431 TPR_17: Tetratricopep 94.7 0.027 5.9E-07 39.3 2.5 28 129-156 2-29 (34)
206 PF00515 TPR_1: Tetratricopept 94.6 0.069 1.5E-06 36.7 4.4 33 106-139 2-34 (34)
207 COG4785 NlpI Lipoprotein NlpI, 94.4 0.58 1.3E-05 46.8 11.8 143 63-234 69-213 (297)
208 PF09295 ChAPs: ChAPs (Chs5p-A 94.4 0.68 1.5E-05 51.2 13.8 110 85-211 183-292 (395)
209 PF13431 TPR_17: Tetratricopep 94.3 0.05 1.1E-06 38.0 3.1 33 93-126 1-33 (34)
210 PF09976 TPR_21: Tetratricopep 94.3 2.3 5.1E-05 39.8 15.6 117 36-168 23-145 (145)
211 COG5238 RNA1 Ran GTPase-activa 94.2 0.024 5.2E-07 58.2 1.9 226 407-674 29-284 (388)
212 KOG2003 TPR repeat-containing 94.2 2 4.3E-05 47.2 16.2 170 37-232 503-705 (840)
213 KOG2120 SCF ubiquitin ligase, 94.2 0.0032 6.9E-08 65.2 -4.5 83 486-590 185-273 (419)
214 KOG1308 Hsp70-interacting prot 94.1 0.051 1.1E-06 57.5 4.1 103 21-137 111-213 (377)
215 KOG4555 TPR repeat-containing 93.8 1.1 2.4E-05 41.4 11.4 106 19-138 38-147 (175)
216 PF07719 TPR_2: Tetratricopept 93.7 0.18 3.9E-06 34.4 5.0 33 106-139 2-34 (34)
217 COG4785 NlpI Lipoprotein NlpI, 93.3 0.83 1.8E-05 45.8 10.7 81 47-140 87-167 (297)
218 KOG2120 SCF ubiquitin ligase, 93.3 0.034 7.4E-07 57.8 1.2 165 430-611 198-372 (419)
219 PRK15331 chaperone protein Sic 93.2 1.5 3.2E-05 42.3 11.9 95 87-185 53-147 (165)
220 PF12688 TPR_5: Tetratrico pep 93.1 2.8 6E-05 38.4 13.2 96 60-169 2-103 (120)
221 PF00515 TPR_1: Tetratricopept 92.9 0.2 4.4E-06 34.3 4.3 33 60-104 2-34 (34)
222 PF07719 TPR_2: Tetratricopept 92.7 0.24 5.3E-06 33.7 4.5 33 176-220 2-34 (34)
223 KOG2376 Signal recognition par 92.5 1.3 2.9E-05 50.2 12.0 121 85-223 26-146 (652)
224 KOG4648 Uncharacterized conser 92.4 0.64 1.4E-05 49.4 9.0 92 36-141 109-200 (536)
225 PF00560 LRR_1: Leucine Rich R 92.1 0.058 1.3E-06 33.7 0.6 16 557-572 2-17 (22)
226 KOG4648 Uncharacterized conser 92.1 0.54 1.2E-05 49.9 8.0 101 111-225 103-203 (536)
227 PRK15386 type III secretion pr 91.9 0.46 1E-05 52.6 7.6 65 538-614 57-124 (426)
228 KOG0473 Leucine-rich repeat pr 91.6 0.013 2.7E-07 59.0 -4.3 67 550-618 37-104 (326)
229 PF13428 TPR_14: Tetratricopep 91.6 0.36 7.7E-06 35.5 4.5 40 177-228 3-42 (44)
230 KOG1840 Kinesin light chain [C 91.4 6.5 0.00014 45.0 16.3 155 35-216 210-396 (508)
231 PF13525 YfiO: Outer membrane 91.1 8.3 0.00018 38.5 15.3 110 26-148 7-132 (203)
232 PF13428 TPR_14: Tetratricopep 90.7 0.61 1.3E-05 34.2 5.0 40 106-146 2-41 (44)
233 PF08424 NRDE-2: NRDE-2, neces 90.7 22 0.00047 38.4 19.0 123 46-169 6-130 (321)
234 PRK15331 chaperone protein Sic 90.4 14 0.0003 35.8 15.0 93 28-134 41-133 (165)
235 PF13504 LRR_7: Leucine rich r 90.2 0.18 3.9E-06 29.5 1.4 16 556-571 2-17 (17)
236 KOG4555 TPR repeat-containing 90.1 4.4 9.6E-05 37.6 10.8 70 120-190 57-130 (175)
237 PF13424 TPR_12: Tetratricopep 90.0 0.54 1.2E-05 38.8 4.8 68 56-136 2-76 (78)
238 KOG0376 Serine-threonine phosp 89.7 0.39 8.4E-06 53.2 4.5 70 120-190 18-87 (476)
239 PF13181 TPR_8: Tetratricopept 89.3 0.8 1.7E-05 31.2 4.4 33 106-139 2-34 (34)
240 PRK10866 outer membrane biogen 89.2 23 0.0005 36.5 17.0 136 85-221 46-209 (243)
241 PF09976 TPR_21: Tetratricopep 89.2 7.3 0.00016 36.4 12.4 113 87-214 27-145 (145)
242 PRK15386 type III secretion pr 89.1 0.6 1.3E-05 51.7 5.4 62 551-618 48-111 (426)
243 COG2956 Predicted N-acetylgluc 88.4 39 0.00085 36.2 18.2 120 42-173 158-281 (389)
244 PF13306 LRR_5: Leucine rich r 88.4 0.61 1.3E-05 42.3 4.3 75 538-617 17-95 (129)
245 PF04184 ST7: ST7 protein; In 88.2 5.8 0.00013 44.5 12.2 151 42-233 185-341 (539)
246 PF12569 NARP1: NMDA receptor- 87.6 13 0.00029 42.7 15.3 148 61-232 196-356 (517)
247 KOG4642 Chaperone-dependent E3 87.5 2.5 5.5E-05 43.0 8.1 84 38-134 23-106 (284)
248 PF13504 LRR_7: Leucine rich r 87.2 0.22 4.8E-06 29.1 0.4 15 603-617 2-16 (17)
249 KOG1310 WD40 repeat protein [G 87.0 2.4 5.3E-05 47.5 8.4 112 102-225 365-483 (758)
250 PF04733 Coatomer_E: Coatomer 86.1 6.4 0.00014 41.8 11.0 88 86-174 182-269 (290)
251 PLN03077 Protein ECB2; Provisi 85.8 33 0.00071 42.2 18.6 165 38-236 538-706 (857)
252 KOG1129 TPR repeat-containing 85.7 4.7 0.0001 42.9 9.2 156 38-220 304-462 (478)
253 PF13424 TPR_12: Tetratricopep 84.9 1.2 2.5E-05 36.7 3.8 65 104-170 4-75 (78)
254 PLN03218 maturation of RBCL 1; 84.9 63 0.0014 40.7 20.3 133 87-234 595-732 (1060)
255 smart00369 LRR_TYP Leucine-ric 84.8 0.72 1.6E-05 29.8 1.9 18 555-572 2-19 (26)
256 smart00370 LRR Leucine-rich re 84.8 0.72 1.6E-05 29.8 1.9 18 555-572 2-19 (26)
257 KOG2053 Mitochondrial inherita 84.8 23 0.00051 42.4 15.3 90 85-177 23-112 (932)
258 PF00560 LRR_1: Leucine Rich R 84.7 0.31 6.8E-06 30.3 0.2 13 579-591 2-14 (22)
259 KOG0473 Leucine-rich repeat pr 83.3 0.07 1.5E-06 53.8 -5.0 77 538-616 47-125 (326)
260 PF13512 TPR_18: Tetratricopep 83.1 14 0.0003 34.9 10.4 67 36-107 59-135 (142)
261 PF13306 LRR_5: Leucine rich r 82.8 1.7 3.7E-05 39.3 4.4 65 550-618 7-73 (129)
262 PRK10941 hypothetical protein; 82.5 7 0.00015 41.0 9.2 67 35-114 192-258 (269)
263 PF13525 YfiO: Outer membrane 82.1 23 0.00051 35.2 12.6 102 120-223 19-126 (203)
264 PLN03218 maturation of RBCL 1; 82.0 99 0.0022 39.0 20.3 147 42-215 596-747 (1060)
265 PRK10866 outer membrane biogen 81.9 29 0.00062 35.8 13.5 118 104-223 31-160 (243)
266 PLN03081 pentatricopeptide (PP 81.2 41 0.00089 40.2 16.4 45 121-169 375-419 (697)
267 PF13181 TPR_8: Tetratricopept 81.1 2.9 6.4E-05 28.3 4.0 34 59-104 1-34 (34)
268 PF13512 TPR_18: Tetratricopep 80.7 26 0.00055 33.1 11.3 78 29-116 15-95 (142)
269 PF08424 NRDE-2: NRDE-2, neces 80.5 30 0.00064 37.3 13.5 123 89-215 3-137 (321)
270 KOG2053 Mitochondrial inherita 79.1 15 0.00032 44.0 11.0 86 121-219 24-109 (932)
271 smart00369 LRR_TYP Leucine-ric 78.9 0.94 2E-05 29.2 0.8 17 602-618 2-18 (26)
272 smart00370 LRR Leucine-rich re 78.9 0.94 2E-05 29.2 0.8 17 602-618 2-18 (26)
273 PRK10941 hypothetical protein; 78.8 12 0.00026 39.2 9.5 61 120-181 195-255 (269)
274 KOG3824 Huntingtin interacting 78.1 6.2 0.00013 41.6 6.8 91 8-115 104-194 (472)
275 KOG1308 Hsp70-interacting prot 77.4 2 4.3E-05 45.9 3.1 92 85-178 128-220 (377)
276 PLN03077 Protein ECB2; Provisi 76.5 84 0.0018 38.6 17.5 135 37-189 567-705 (857)
277 smart00365 LRR_SD22 Leucine-ri 75.6 2.1 4.6E-05 28.0 1.8 17 555-571 2-18 (26)
278 KOG2396 HAT (Half-A-TPR) repea 75.4 63 0.0014 36.6 13.9 90 42-144 88-178 (568)
279 PF05843 Suf: Suppressor of fo 75.0 1.1E+02 0.0025 32.0 15.8 129 87-226 17-146 (280)
280 PLN03081 pentatricopeptide (PP 74.3 90 0.002 37.3 16.6 32 203-234 510-541 (697)
281 KOG3763 mRNA export factor TAP 73.2 1.7 3.7E-05 49.1 1.4 54 538-591 223-284 (585)
282 KOG1840 Kinesin light chain [C 72.8 1.3E+02 0.0028 34.6 16.3 128 30-171 247-397 (508)
283 COG3071 HemY Uncharacterized e 71.7 1.6E+02 0.0036 32.3 19.1 172 34-237 163-377 (400)
284 PF04733 Coatomer_E: Coatomer 70.4 28 0.00061 36.9 9.9 98 29-138 171-268 (290)
285 KOG1070 rRNA processing protei 69.8 3.3E+02 0.0071 35.1 20.8 183 19-231 1492-1679(1710)
286 KOG4642 Chaperone-dependent E3 69.6 20 0.00044 36.7 7.9 77 85-163 24-100 (284)
287 KOG1310 WD40 repeat protein [G 69.2 20 0.00043 40.6 8.4 91 85-176 388-480 (758)
288 smart00028 TPR Tetratricopepti 66.9 14 0.00031 22.9 4.5 33 176-220 2-34 (34)
289 smart00028 TPR Tetratricopepti 65.8 14 0.00029 23.0 4.2 33 60-104 2-34 (34)
290 COG2912 Uncharacterized conser 65.7 34 0.00074 35.7 8.9 83 22-116 178-260 (269)
291 KOG0551 Hsp90 co-chaperone CNS 65.5 39 0.00084 36.3 9.3 90 87-178 97-190 (390)
292 COG5191 Uncharacterized conser 65.3 18 0.00038 38.4 6.7 100 48-170 96-196 (435)
293 smart00365 LRR_SD22 Leucine-ri 64.1 4.8 0.0001 26.4 1.5 16 577-592 2-17 (26)
294 PF13174 TPR_6: Tetratricopept 64.1 18 0.00039 23.8 4.6 32 61-104 2-33 (33)
295 KOG2796 Uncharacterized conser 63.2 2E+02 0.0043 30.2 18.3 131 87-231 193-333 (366)
296 COG3071 HemY Uncharacterized e 62.8 1.9E+02 0.0041 31.9 14.1 79 87-168 310-388 (400)
297 smart00364 LRR_BAC Leucine-ric 62.4 4.9 0.00011 26.3 1.3 17 556-572 3-19 (26)
298 PF02259 FAT: FAT domain; Int 61.6 2.2E+02 0.0048 30.2 19.5 62 158-219 275-341 (352)
299 PF14863 Alkyl_sulf_dimr: Alky 60.7 25 0.00054 33.1 6.3 48 26-74 72-119 (141)
300 COG2956 Predicted N-acetylgluc 58.4 2.7E+02 0.0059 30.1 18.6 90 85-175 155-248 (389)
301 KOG0545 Aryl-hydrocarbon recep 57.7 1.5E+02 0.0032 30.8 11.5 63 120-184 244-307 (329)
302 PF13174 TPR_6: Tetratricopept 56.4 20 0.00044 23.5 3.8 31 107-138 2-32 (33)
303 PF04781 DUF627: Protein of un 56.3 1E+02 0.0022 27.8 9.1 98 35-135 7-107 (111)
304 KOG2610 Uncharacterized conser 54.7 3.2E+02 0.0068 29.8 14.4 112 37-163 116-231 (491)
305 PF14853 Fis1_TPR_C: Fis1 C-te 53.5 50 0.0011 25.6 5.9 31 117-148 13-43 (53)
306 PF05843 Suf: Suppressor of fo 53.1 91 0.002 32.8 9.9 111 107-230 3-114 (280)
307 PF13176 TPR_7: Tetratricopept 52.1 23 0.0005 24.6 3.6 32 177-220 1-34 (36)
308 KOG2796 Uncharacterized conser 52.0 1.6E+02 0.0035 30.8 10.8 126 36-175 189-320 (366)
309 PF03704 BTAD: Bacterial trans 51.7 1.5E+02 0.0032 27.3 10.2 52 34-98 72-123 (146)
310 PF13516 LRR_6: Leucine Rich r 51.4 6.7 0.00015 24.6 0.6 13 555-567 2-14 (24)
311 smart00446 LRRcap occurring C- 49.6 11 0.00024 24.7 1.4 21 677-697 2-22 (26)
312 KOG0545 Aryl-hydrocarbon recep 49.4 1.1E+02 0.0023 31.8 9.0 61 159-231 248-308 (329)
313 PF14853 Fis1_TPR_C: Fis1 C-te 48.3 43 0.00092 25.9 4.7 40 32-72 9-48 (53)
314 KOG4340 Uncharacterized conser 48.2 2E+02 0.0043 30.7 10.9 163 34-228 20-184 (459)
315 KOG2610 Uncharacterized conser 48.1 1.7E+02 0.0037 31.7 10.5 102 87-190 119-224 (491)
316 smart00368 LRR_RI Leucine rich 45.4 15 0.00033 24.2 1.7 13 556-568 3-15 (28)
317 KOG0551 Hsp90 co-chaperone CNS 45.1 1.4E+02 0.0029 32.4 9.3 95 34-142 91-189 (390)
318 COG1729 Uncharacterized protei 44.0 2.2E+02 0.0048 29.8 10.6 105 27-142 144-251 (262)
319 PF02259 FAT: FAT domain; Int 41.8 1.6E+02 0.0035 31.2 10.0 65 39-103 272-341 (352)
320 PF15297 CKAP2_C: Cytoskeleton 40.9 2E+02 0.0043 31.3 9.9 73 19-103 97-172 (353)
321 KOG3785 Uncharacterized conser 39.8 5.4E+02 0.012 28.2 14.7 114 87-226 73-190 (557)
322 KOG2396 HAT (Half-A-TPR) repea 39.3 2.4E+02 0.0053 32.1 10.6 92 87-179 87-178 (568)
323 KOG3824 Huntingtin interacting 39.3 81 0.0018 33.6 6.5 66 120-186 130-195 (472)
324 PF13176 TPR_7: Tetratricopept 38.6 39 0.00085 23.4 3.0 26 108-134 2-27 (36)
325 KOG1915 Cell cycle control pro 37.4 6.8E+02 0.015 28.6 19.0 186 20-231 55-366 (677)
326 KOG4308 LRR-containing protein 36.6 3.2 6.9E-05 47.3 -4.5 127 475-616 161-304 (478)
327 PF04910 Tcf25: Transcriptiona 34.1 6.6E+02 0.014 27.5 20.9 112 21-142 7-140 (360)
328 KOG1947 Leucine rich repeat pr 32.9 19 0.0004 40.3 0.9 12 663-674 296-307 (482)
329 PF13281 DUF4071: Domain of un 32.6 7.2E+02 0.016 27.5 15.9 171 31-225 148-340 (374)
330 PF12583 TPPII_N: Tripeptidyl 31.5 94 0.002 28.9 4.9 45 17-65 72-116 (139)
331 KOG2047 mRNA splicing factor [ 31.3 7.3E+02 0.016 29.4 12.9 162 45-229 335-592 (835)
332 PF14561 TPR_20: Tetratricopep 30.8 1.6E+02 0.0035 25.3 6.2 50 159-220 6-55 (90)
333 KOG4308 LRR-containing protein 30.3 5.3 0.00011 45.5 -4.1 79 538-616 92-186 (478)
334 PF13205 Big_5: Bacterial Ig-l 30.1 2.2E+02 0.0048 24.4 7.2 75 280-367 24-99 (107)
335 PF04781 DUF627: Protein of un 29.5 2.4E+02 0.0051 25.5 7.1 72 158-230 13-87 (111)
336 KOG3785 Uncharacterized conser 29.2 5.7E+02 0.012 28.0 10.9 116 36-153 69-232 (557)
337 PF04184 ST7: ST7 protein; In 29.0 9.4E+02 0.02 27.7 14.4 89 87-176 275-381 (539)
338 PF13226 DUF4034: Domain of un 28.6 3.7E+02 0.008 28.4 9.5 67 90-156 62-149 (277)
339 COG2912 Uncharacterized conser 28.3 2E+02 0.0044 30.1 7.4 64 120-184 195-258 (269)
340 PF13281 DUF4071: Domain of un 28.3 6.4E+02 0.014 27.9 11.6 109 121-233 156-272 (374)
341 PRK04841 transcriptional regul 27.8 1.2E+03 0.026 28.5 17.1 121 35-170 463-602 (903)
342 TIGR00864 PCC polycystin catio 26.6 35 0.00076 46.2 1.8 29 539-567 1-31 (2740)
343 COG4976 Predicted methyltransf 26.4 1.7E+02 0.0036 30.1 6.1 71 158-240 12-82 (287)
344 PF03704 BTAD: Bacterial trans 25.7 5.1E+02 0.011 23.6 13.4 46 120-166 76-121 (146)
345 COG5191 Uncharacterized conser 25.5 73 0.0016 34.0 3.6 72 41-134 123-195 (435)
346 smart00386 HAT HAT (Half-A-TPR 25.5 91 0.002 20.0 3.0 25 87-111 3-27 (33)
347 COG3914 Spy Predicted O-linked 24.7 7.1E+02 0.015 29.1 11.3 101 30-142 71-178 (620)
348 KOG3081 Vesicle coat complex C 24.3 8.6E+02 0.019 25.7 13.2 85 87-172 189-273 (299)
349 PF10300 DUF3808: Protein of u 24.2 9.4E+02 0.02 27.3 12.6 98 85-184 247-348 (468)
350 KOG3864 Uncharacterized conser 23.9 17 0.00038 36.3 -1.2 34 576-610 150-184 (221)
351 KOG1070 rRNA processing protei 23.7 1.8E+03 0.038 29.1 16.1 154 17-184 1519-1678(1710)
352 COG5107 RNA14 Pre-mRNA 3'-end 22.7 8.8E+02 0.019 27.6 11.2 137 85-231 23-162 (660)
353 KOG3864 Uncharacterized conser 22.4 12 0.00027 37.3 -2.5 61 556-617 102-167 (221)
354 PF14561 TPR_20: Tetratricopep 21.6 2.8E+02 0.0061 23.8 6.0 50 89-139 6-55 (90)
355 COG4976 Predicted methyltransf 21.4 1.6E+02 0.0035 30.3 4.9 70 36-118 7-76 (287)
356 PF13226 DUF4034: Domain of un 20.5 5.3E+02 0.011 27.3 8.8 72 159-230 61-142 (277)
No 1
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-64 Score=523.78 Aligned_cols=409 Identities=44% Similarity=0.698 Sum_probs=320.5
Q ss_pred CCCCcCC-CCChHHHHH---HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccC
Q 005381 1 MHGRPRK-PLKPEDAAA---SAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEN 76 (699)
Q Consensus 1 mhg~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~ 76 (699)
||||+|+ ++++|.+++ +.+++..|+..+++|..+++.++||+++++++.++|..||++|++||||+.++.......
T Consensus 1 Mhg~~kv~~~eee~~~k~~~~~~k~~~~~~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~ 80 (421)
T KOG0529|consen 1 MHGRLKVKTTEEEKEAKLKERAFKAGQLRSLFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRA 80 (421)
T ss_pred CCcccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhh
Confidence 9999998 556666664 466688888889999999999999999999999999999999999999999998876534
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCC
Q 005381 77 DSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHS-SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR 155 (699)
Q Consensus 77 ~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~-~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~ 155 (699)
+.+|.+.+..+++||.+++.||+.|||+|.+||||+|+|++.+. .+..||.+|+++|+.||||||||+|||||+.+..+
T Consensus 81 ~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 81 QLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred cCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence 56677888899999999999999999999999999999997654 49999999999999999999999999999999988
Q ss_pred C---hHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHc
Q 005381 156 S---EEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (699)
Q Consensus 156 ~---~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~ 232 (699)
. +.+|++||+++|..||+||||||||+.+|+.+.+++..|.....+.+..|++.+++|+|+||+|+|+|+|++|||+
T Consensus 161 ~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~ 240 (421)
T KOG0529|consen 161 SRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLG 240 (421)
T ss_pred ccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhc
Confidence 7 7899999999999999999999999999999998877774334466799999999999999999999999999999
Q ss_pred CcCCCCCCcccccCCCCCCcceecCCccccCCCCCCCccccCCCCccceEEeeccccccccccceEEecccCCCccceee
Q 005381 233 QTVRVDSPQLVSSWPTPGSDLILLGDRCLDGCASSPFTRFHLDSRTFPLVLYFNQAVEGVNSSTITVDSELNTNKDLVWK 312 (699)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 312 (699)
++.+.+ |..++. +.+++.++.+|.+.+|...+.++.+ ++.++ |+
T Consensus 241 ~~~~~~---------------------~~~~S~----s~~ls~~~~~p~~~~l~~e~~~v~~---~i~~E--------~~ 284 (421)
T KOG0529|consen 241 RGMRRE---------------------CYIVSH----SALLSESFSEPLIKYLRSEIGLVQS---TIGSE--------FE 284 (421)
T ss_pred cccccc---------------------cccccc----ccccccccCCccHHHHHHHhhhhhh---hhhhh--------cc
Confidence 987655 111111 1345667788899999888877643 33333 33
Q ss_pred e-CCCCCCccceeEEEeccCCCCCCCCCCccceEEecCcccccccCCCCccCCCccceEEEEEeecccccccccccceee
Q 005381 313 P-LSSCNSKAAQVWVTQLNLPDGNTHSSKVFPVEVSLGHSQGIISSSGFHYSNPFCFAFRVSLQFVETQPVEALGKEIIS 391 (699)
Q Consensus 313 ~-~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (699)
+ ++..+ |+|..+.. |..|.+ ++.|++.-.+ . ..+..+
T Consensus 285 ~~~d~~g------w~~~~~~n-----------------------------~~s~~~-~~~v~~~~e~--~----~~~~~~ 322 (421)
T KOG0529|consen 285 TPIDKRG------WLCESLVN-----------------------------LESPYE-TKRVHLTVED--Q----QFGIVS 322 (421)
T ss_pred ccccccC------chhccccc-----------------------------hhhhhh-cccccccccc--c----cccccc
Confidence 3 22222 77765541 122333 2333332211 1 112334
Q ss_pred ccCCCccccc-cccCCCCCccccccccccccCccchhhhhHHHHHHHHHHHHhhhh-ccccccccccHHHHHhhcccCCC
Q 005381 392 WRDESFHNYN-AHSQDSSPISSLYQLSIKNDNELTDFEWRAATIAKEIDHFRELLS-LINCKIGKLTLARLLMAHDAMMC 469 (699)
Q Consensus 392 ~~~~~~~~~~-~~~~~~~~l~~~~~lsi~~~~~~~~~~~~~~~L~~el~~~~~L~~-~p~nk~~~Ltl~~ll~~~~~l~~ 469 (699)
|.+ .++.+. +.. ..+-+++ -+.+ .....|+++|++|.+|++ +|++||++++.++++++.++|.
T Consensus 323 ~~~-~~e~~~~~~~---~~l~~~~------~~e~----~~~a~lqe~ie~c~~l~~~~P~~k~~~l~~~~l~~a~e~~~- 387 (421)
T KOG0529|consen 323 WVA-SNEQWLHALL---DDLDSLD------CNEE----TRRAWLQEQIESCVELQELLPDSKWGLLTSALLLRALEPMD- 387 (421)
T ss_pred chh-hhhhhHHHHh---hhccccc------hhhh----ccHHHHHHHHHHHHHHHhhCCccchhHHHHHHHHhcccccc-
Confidence 433 223222 111 1111221 1122 366789999999999999 9999999999999999999974
Q ss_pred CCCCcCCCcHHHHHhcccccccCCCCCccccchhhhHHhh
Q 005381 470 PPANKISHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQ 509 (699)
Q Consensus 470 ~~~~~~~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~ 509 (699)
+.+++++.++.|+.+|+.+.+||+++++.+.++
T Consensus 388 -------~~~~~l~~~~~le~~d~~~~~yykdl~s~~~l~ 420 (421)
T KOG0529|consen 388 -------SEEEILQLYNDLEALDPGRHQYYKDLHSRFLLE 420 (421)
T ss_pred -------chHHHHHHHHHHhccchhhhHHHHhHHHHhccC
Confidence 348899999999999999999999999987653
No 2
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-42 Score=338.54 Aligned_cols=207 Identities=28% Similarity=0.518 Sum_probs=191.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhH
Q 005381 8 PLKPEDAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSIL 87 (699)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~ 87 (699)
+..++++..++++.++|++.|++|++.+..+|+|++||++|+.+|..||.+||+|+||+.+|.+++. .+
T Consensus 26 qdDg~npvv~I~Yte~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~-----------dL 94 (318)
T KOG0530|consen 26 QDDGPNPVVKIAYTEDFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS-----------DL 94 (318)
T ss_pred CCCCCCcceEeeechhHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH-----------HH
Confidence 4667888999999999999999999999999999999999999999999999999999999999964 58
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHH
Q 005381 88 DEELRVVESALRQNFKSYGAWHHRKWILSKGHSSID-NELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (699)
Q Consensus 88 ~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~-~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~ 166 (699)
.+||++.+.++..|||||++||||+|+++.++ ++. +||+++..++..|.||||||.||.|+++.++.+ ++||+|+++
T Consensus 95 ~~El~~l~eI~e~npKNYQvWHHRr~ive~l~-d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~-~~EL~y~~~ 172 (318)
T KOG0530|consen 95 NKELEYLDEIIEDNPKNYQVWHHRRVIVELLG-DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDY-EDELAYADE 172 (318)
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHhc-CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhH-HHHHHHHHH
Confidence 99999999999999999999999999999875 555 999999999999999999999999999999997 899999999
Q ss_pred HHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 167 MICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 167 ~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
+|+.|..|+|||+||.+++.... |..+ ...+++|+.+..+.|.+.|+|+|||+|+++++..
T Consensus 173 Lle~Di~NNSAWN~Ryfvi~~~~-----~~~~-~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 173 LLEEDIRNNSAWNQRYFVITNTK-----GVIS-KAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHhhhccchhheeeEEEEecc-----CCcc-HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 99999999999999999987641 2222 2457999999999999999999999999999986
No 3
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-40 Score=323.78 Aligned_cols=226 Identities=34% Similarity=0.587 Sum_probs=192.7
Q ss_pred CCCCcCC-CC----ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhcc
Q 005381 1 MHGRPRK-PL----KPEDAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTE 75 (699)
Q Consensus 1 mhg~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~ 75 (699)
|||-.|+ +. .-+.+.+++.+.+.|+.+++.|++++..++||.+||++|..+|..||++|++||||+.++.+...
T Consensus 3 ~~~~~r~~~~~~q~~l~~~l~ri~~~e~y~~l~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~- 81 (328)
T COG5536 3 DLDLRRVKPLPIQFDLLSELQRILYTESYHPLMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQM- 81 (328)
T ss_pred cccchhccccccchhhhhHHHHHHhhhccchHHHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhh-
Confidence 5776665 32 23345568888999999999999999999999999999999999999999999999999998421
Q ss_pred CCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcC
Q 005381 76 NDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH-SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMN 154 (699)
Q Consensus 76 ~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~-~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~ 154 (699)
..+.-...++.|+++++.+++.|||+|++||||+|+|+..+ ++|.+|+.+++++|+.|+||||+|+||+||+....
T Consensus 82 ---~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie 158 (328)
T COG5536 82 ---VSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIE 158 (328)
T ss_pred ---hcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecch
Confidence 11223356899999999999999999999999999999653 57999999999999999999999999999995432
Q ss_pred C-----ChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005381 155 R-----SEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (699)
Q Consensus 155 ~-----~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~ 229 (699)
. ...+|++|+..+|+.|++|+||||||..++..+...+ -....+.+++||+++.++++++|+|+|+|+|+||
T Consensus 159 ~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~---~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~ 235 (328)
T COG5536 159 DLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRG---DVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRG 235 (328)
T ss_pred hhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhc---ccchHHHHHHHHHHHHhhhhcCccccchhhHHHH
Confidence 1 2378999999999999999999999988888776522 2223346899999999999999999999999999
Q ss_pred HHcC
Q 005381 230 LLDQ 233 (699)
Q Consensus 230 Ll~~ 233 (699)
+.+.
T Consensus 236 ~~~~ 239 (328)
T COG5536 236 VSSE 239 (328)
T ss_pred Hhcc
Confidence 9976
No 4
>PLN02789 farnesyltranstransferase
Probab=100.00 E-value=1.2e-37 Score=331.16 Aligned_cols=207 Identities=27% Similarity=0.503 Sum_probs=188.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHH
Q 005381 10 KPEDAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDE 89 (699)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~e 89 (699)
+++.+..++++.++|++.++.|++....++++++||++|+++|++||++||+|++||.++..++. .+++
T Consensus 22 ~~~~~~~~i~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~-----------~l~e 90 (320)
T PLN02789 22 DGPNPVVPIAYTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDA-----------DLEE 90 (320)
T ss_pred CCCCcccceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcch-----------hHHH
Confidence 33457789999999999999999999999999999999999999999999999999999998852 4899
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHH
Q 005381 90 ELRVVESALRQNFKSYGAWHHRKWILSKGHS-SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMI 168 (699)
Q Consensus 90 EL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~-~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I 168 (699)
||++++++++.|||+|++|+||+|++.++.. .+++|++++++++++||+|||||+||+|++.+++.+ ++|+++|+++|
T Consensus 91 eL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~-~eeL~~~~~~I 169 (320)
T PLN02789 91 ELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGW-EDELEYCHQLL 169 (320)
T ss_pred HHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhH-HHHHHHHHHHH
Confidence 9999999999999999999999999998742 247899999999999999999999999999999998 78999999999
Q ss_pred HhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 169 CNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 169 ~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
+.||+|+|||+||++++.+++..+ ....++++|++++.++|.++|+|+|+|+|+++++..
T Consensus 170 ~~d~~N~sAW~~R~~vl~~~~~l~-----~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 170 EEDVRNNSAWNQRYFVITRSPLLG-----GLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHCCCchhHHHHHHHHHHhccccc-----cccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 999999999999999998763210 122356889999999999999999999999999976
No 5
>PLN02789 farnesyltranstransferase
Probab=99.94 E-value=2e-25 Score=237.68 Aligned_cols=176 Identities=26% Similarity=0.389 Sum_probs=150.3
Q ss_pred CCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 005381 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK 117 (699)
Q Consensus 38 ~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~ 117 (699)
+...+++|++++++|+.||++|++|++|++++..++. ..+.+|+.+++++|..+||||+||+||+|++..
T Consensus 85 ~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~----------~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~ 154 (320)
T PLN02789 85 DADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP----------DAANKELEFTRKILSLDAKNYHAWSHRQWVLRT 154 (320)
T ss_pred chhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc----------hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4444899999999999999999999999999998853 235789999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhc---CCC---hHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhh
Q 005381 118 GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM---NRS---EEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR 191 (699)
Q Consensus 118 ~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l---~~~---~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~ 191 (699)
. +.+++|+++|+++|+.||+|++||+||++++.++ +.. .++|++|++++|+.+|.|+|||+|+++++.....
T Consensus 155 l-~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~- 232 (320)
T PLN02789 155 L-GGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE- 232 (320)
T ss_pred h-hhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc-
Confidence 8 5899999999999999999999999999999887 333 2689999999999999999999999999976311
Q ss_pred hccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHc
Q 005381 192 KVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (699)
Q Consensus 192 ~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~ 232 (699)
+. ....++++.+.+++..+|...-|-.++.-++.
T Consensus 233 ---~l----~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 233 ---AL----VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred ---cc----ccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 00 11345778888888888888877777666664
No 6
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.3e-24 Score=225.05 Aligned_cols=137 Identities=27% Similarity=0.517 Sum_probs=124.4
Q ss_pred cHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 005381 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHS 120 (699)
Q Consensus 41 ~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~ 120 (699)
.++.|.+...+|++||+.|++||+|+|+|++... .++..||.+|+++|+.|||||++|+||+|++.+...
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~----------~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH----------SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC----------chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence 3688999999999999999999999999998864 369999999999999999999999999999997654
Q ss_pred C---hHHHHHHHHHHHHhCCCChhhhhHHHHHHHhc------C-CC----hHHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 005381 121 S---IDNELRLLDKFQKADSRNFHAWNYRRFVAASM------N-RS----EEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (699)
Q Consensus 121 ~---~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l------~-~~----~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~ 186 (699)
+ ..+|+++|++++..+++|||||+||.+++..+ | .+ ...|++++..+|..||.|+|+|+|+.|++.
T Consensus 161 ~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~ 240 (421)
T KOG0529|consen 161 SRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLG 240 (421)
T ss_pred ccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhc
Confidence 4 77999999999999999999999999999965 2 11 267999999999999999999999999987
Q ss_pred H
Q 005381 187 N 187 (699)
Q Consensus 187 ~ 187 (699)
+
T Consensus 241 ~ 241 (421)
T KOG0529|consen 241 R 241 (421)
T ss_pred c
Confidence 6
No 7
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1e-21 Score=194.42 Aligned_cols=136 Identities=26% Similarity=0.502 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHH
Q 005381 88 DEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDM 167 (699)
Q Consensus 88 ~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~ 167 (699)
..+|++++.+|..||-+|++|++|+-+|..+...+.+|+++.+.+++.+||||..|+|||++++.++.+.-.||+||.++
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 58999999999999999999999999999887789999999999999999999999999999999998754899999999
Q ss_pred HHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcC
Q 005381 168 ICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTV 235 (699)
Q Consensus 168 I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~ 235 (699)
|..+..||.||.||.|+++... .+++||.+++..|+.|--|.|||+++.|++..+.
T Consensus 140 l~~DaKNYHaWshRqW~~r~F~------------~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~ 195 (318)
T KOG0530|consen 140 LDDDAKNYHAWSHRQWVLRFFK------------DYEDELAYADELLEEDIRNNSAWNQRYFVITNTK 195 (318)
T ss_pred HhccccchhhhHHHHHHHHHHh------------hHHHHHHHHHHHHHHhhhccchhheeeEEEEecc
Confidence 9999999999999999999873 3899999999999999999999999999997754
No 8
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.1e-17 Score=163.86 Aligned_cols=136 Identities=24% Similarity=0.387 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC--
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH-- 119 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~-- 119 (699)
+..|+..+.+++-||++|++|+||+++|..... +.++.|+.+++++|..+|+||++|+||+|++..+.
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~----------~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~ 160 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPK----------PSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDL 160 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCC----------cccchhHHHHHHHhcccccccceeeeEeeeeecchhh
Confidence 567899999999999999999999999998754 34999999999999999999999999999995432
Q ss_pred ---CChHHHHHHHHHHHHhCCCChhhhhHHHHHH---HhcCC-----ChHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 005381 120 ---SSIDNELRLLDKFQKADSRNFHAWNYRRFVA---ASMNR-----SEEDELKYTEDMICNNFSNYSAWHNRSLLLSN 187 (699)
Q Consensus 120 ---~~~~~EL~~~~k~L~~dprN~haW~yR~~vl---~~l~~-----~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~ 187 (699)
+.+.+|+++...++.-|+-|+.||+||...+ .+-|. +-++||+|...++-.+|.|.|+|.|..+++..
T Consensus 161 ~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 161 FNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred ccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence 4577999999999999999999999993322 22222 13789999999999999999999999998876
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.57 E-value=1.8e-16 Score=172.59 Aligned_cols=159 Identities=25% Similarity=0.323 Sum_probs=122.4
Q ss_pred cCCCCCccccccccccccCccchhhhhHHHHHHHHHHHHhhhhccccccccccHHHHHhhcccCCCCCCCcCCCcHHHHH
Q 005381 404 SQDSSPISSLYQLSIKNDNELTDFEWRAATIAKEIDHFRELLSLINCKIGKLTLARLLMAHDAMMCPPANKISHSEEVLE 483 (699)
Q Consensus 404 ~~~~~~l~~~~~lsi~~~~~~~~~~~~~~~L~~el~~~~~L~~~p~nk~~~Ltl~~ll~~~~~l~~~~~~~~~~~~~~l~ 483 (699)
.++.+.|.+|++||+ +++.+..+..|+..+..|++ +....+.++ ..|.++++|
T Consensus 48 PeEL~~lqkLEHLs~--------~HN~L~~vhGELs~Lp~LRs-------------v~~R~N~LK-----nsGiP~diF- 100 (1255)
T KOG0444|consen 48 PEELSRLQKLEHLSM--------AHNQLISVHGELSDLPRLRS-------------VIVRDNNLK-----NSGIPTDIF- 100 (1255)
T ss_pred hHHHHHHhhhhhhhh--------hhhhhHhhhhhhccchhhHH-------------Hhhhccccc-----cCCCCchhc-
Confidence 566778889999999 77788999999988888885 333334433 367778877
Q ss_pred hcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCccc--CCCCCcccCEEE
Q 005381 484 LYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLG--SFDKLLWVQMLD 561 (699)
Q Consensus 484 ~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~--~l~~L~~L~~Ld 561 (699)
.+..|++||+|||+ +...+.....-.++-. |+||+|+|.+|| -+-+|+.|..||
T Consensus 101 ~l~dLt~lDLShNq-----------------L~EvP~~LE~AKn~iV-------LNLS~N~IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQ-----------------LREVPTNLEYAKNSIV-------LNLSYNNIETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred ccccceeeecchhh-----------------hhhcchhhhhhcCcEE-------EEcccCccccCCchHHHhhHhHhhhc
Confidence 78999999999998 3444444444344333 999999999998 678999999999
Q ss_pred ccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccC
Q 005381 562 LSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEI 614 (699)
Q Consensus 562 LS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I 614 (699)
||+|+|..+|+ +..|..|++|.|++|.+..+ .+..+..+++|++|.+++.+-
T Consensus 157 LS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hf-QLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 157 LSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHF-QLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred cccchhhhcCHHHHHHhhhhhhhcCCChhhHH-HHhcCccchhhhhhhcccccc
Confidence 99999999999 99999999999999998654 234555566666666665544
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.53 E-value=3.3e-15 Score=145.23 Aligned_cols=126 Identities=33% Similarity=0.514 Sum_probs=63.3
Q ss_pred CeEEccCCCCCcccCCC-CCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccc-ccccccccccccccc
Q 005381 536 MCLQLKNLSLSRLGSFD-KLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPI-RQLKSLRALNISYNE 613 (699)
Q Consensus 536 ~~L~Ls~n~l~~l~~l~-~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l-~~l~~L~~L~Ls~N~ 613 (699)
++|+|++|.|+.|..++ .+.+|+.||||+|.|+.++++..++.|++|++++|+|+++. +.+ ..+++|+.|+|++|+
T Consensus 22 ~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~--~~l~~~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 22 RELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS--EGLDKNLPNLQELYLSNNK 99 (175)
T ss_dssp --------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C--HHHHHH-TT--EEE-TTS-
T ss_pred ccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc--cchHHhCCcCCEEECcCCc
Confidence 44999999999998887 58999999999999999999999999999999999999872 334 468999999999999
Q ss_pred CCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC-CCccchHHHhhcCCccc
Q 005381 614 IGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI-VNEKFKSFLIKVLPGLK 691 (699)
Q Consensus 614 I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~~~~~~~~~~~l~~L~ 691 (699)
|..+. . ...++.+ +|+.|+|.+||+ ..+.|+..++..+|+|+
T Consensus 100 I~~l~--~----------------------------------l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk 143 (175)
T PF14580_consen 100 ISDLN--E----------------------------------LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLK 143 (175)
T ss_dssp --SCC--C----------------------------------CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-S
T ss_pred CCChH--H----------------------------------hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhh
Confidence 98873 1 1244556 899999999999 66799999999999999
Q ss_pred cccCccCC
Q 005381 692 WLDGEQLH 699 (699)
Q Consensus 692 ~LD~~~i~ 699 (699)
.|||.+|+
T Consensus 144 ~LD~~~V~ 151 (175)
T PF14580_consen 144 VLDGQDVT 151 (175)
T ss_dssp EETTEETT
T ss_pred eeCCEEcc
Confidence 99999885
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.49 E-value=4.6e-15 Score=161.73 Aligned_cols=258 Identities=17% Similarity=0.141 Sum_probs=131.9
Q ss_pred CCCccccccccccccCccchhhhhHHHHHHHHHHHHhhhh--ccccccccccHHHHHhhcccCCC-CCCCcCCCcHHHHH
Q 005381 407 SSPISSLYQLSIKNDNELTDFEWRAATIAKEIDHFRELLS--LINCKIGKLTLARLLMAHDAMMC-PPANKISHSEEVLE 483 (699)
Q Consensus 407 ~~~l~~~~~lsi~~~~~~~~~~~~~~~L~~el~~~~~L~~--~p~nk~~~Ltl~~ll~~~~~l~~-~~~~~~~~~~~~l~ 483 (699)
-.+++.+++|+| -.=|++.+...|.+++.-++++- ...|.+..+....+....+.+-. -..++....+.-..
T Consensus 96 P~diF~l~dLt~-----lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~R 170 (1255)
T KOG0444|consen 96 PTDIFRLKDLTI-----LDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIR 170 (1255)
T ss_pred Cchhccccccee-----eecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHH
Confidence 347888888888 44477888999999988877653 22222222211111000000000 00112233333344
Q ss_pred hcccccccCCCCCcc----ccchhhhHHhhhhc-----cchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCccc-CCCC
Q 005381 484 LYNDLMRLDPTHVQY----YKDQHSLVLLQQVT-----SNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLG-SFDK 553 (699)
Q Consensus 484 ~l~~L~~LDls~n~~----~~~l~sl~~l~~l~-----~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~-~l~~ 553 (699)
.+..|++|++|+|.. ...++++-.++-+. ..+..++..+..+.++.. ++||.|.++.+| .+..
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~d-------vDlS~N~Lp~vPecly~ 243 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRD-------VDLSENNLPIVPECLYK 243 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhh-------ccccccCCCcchHHHhh
Confidence 455555666655543 11122211111100 001111111222222222 666677776666 6666
Q ss_pred CcccCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcc
Q 005381 554 LLWVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSH 632 (699)
Q Consensus 554 L~~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ 632 (699)
+++|..|+||+|+|+.+.- .....+|++|+||+|+++.+ |..+.+++.|+.|.+.+|+++--. .+.++..+..+.
T Consensus 244 l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~L--P~avcKL~kL~kLy~n~NkL~FeG--iPSGIGKL~~Le 319 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVL--PDAVCKLTKLTKLYANNNKLTFEG--IPSGIGKLIQLE 319 (1255)
T ss_pred hhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccc--hHHHhhhHHHHHHHhccCcccccC--CccchhhhhhhH
Confidence 6677777777777766655 55566666667777766665 456666666666666666663221 123333333333
Q ss_pred cccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC-CCccchHHHhhcCCccccccC
Q 005381 633 SVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI-VNEKFKSFLIKVLPGLKWLDG 695 (699)
Q Consensus 633 ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~~~~~~~~~~~l~~L~~LD~ 695 (699)
.+...+|.+.+ .|..++.| .|+.|.|++|.+ ..| ..+..+|.|+.||-
T Consensus 320 vf~aanN~LEl-----------VPEglcRC~kL~kL~L~~NrLiTLP----eaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 320 VFHAANNKLEL-----------VPEGLCRCVKLQKLKLDHNRLITLP----EAIHLLPDLKVLDL 369 (1255)
T ss_pred HHHhhcccccc-----------CchhhhhhHHHHHhcccccceeech----hhhhhcCCcceeec
Confidence 34444454433 35677777 777777777777 322 22345677777764
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.43 E-value=3.3e-14 Score=154.61 Aligned_cols=157 Identities=21% Similarity=0.175 Sum_probs=80.8
Q ss_pred CCcHHHHHhcccccccCCCCCcc-------ccchhhhHHhhhhccchHHHhhh-hccCCCCCCCCCCCCeEEccCCCCCc
Q 005381 476 SHSEEVLELYNDLMRLDPTHVQY-------YKDQHSLVLLQQVTSNWESLLSR-CFHYSNSPSNRGSPMCLQLKNLSLSR 547 (699)
Q Consensus 476 ~~~~~~l~~l~~L~~LDls~n~~-------~~~l~sl~~l~~l~~~~~~l~~~-~~~l~~l~~l~L~~~~L~Ls~n~l~~ 547 (699)
....-+|+.+++|+.||+.+|++ |+.+.|+-.++--...+..+..+ +..+.++.. |+|..|+++.
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~-------l~L~~N~l~~ 283 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEH-------LNLETNRLQA 283 (873)
T ss_pred ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccce-------eecccchhhh
Confidence 44456778888888888888875 44455543333222222223333 333444444 5555555554
Q ss_pred cc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCccccc
Q 005381 548 LG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTK 623 (699)
Q Consensus 548 l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~ 623 (699)
+. ++.+|+.|+.|+||+|.|..|.. -+..++|+.|+|++|+|+.++ ++.|..|..|+.|+|++|+|+.+.- .
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~-~~sf~~L~~Le~LnLs~Nsi~~l~e---~ 359 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD-EGSFRVLSQLEELNLSHNSIDHLAE---G 359 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC-hhHHHHHHHhhhhcccccchHHHHh---h
Confidence 43 55555555555555555554433 444455555555555555552 2445555555555555555555432 1
Q ss_pred ccCCCCCcccccCCCCccce
Q 005381 624 YLCSSPLSHSVGSEWNHGQT 643 (699)
Q Consensus 624 ~l~~l~ll~ll~l~~N~l~~ 643 (699)
.+..++.++.+++..|.+..
T Consensus 360 af~~lssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSNELSW 379 (873)
T ss_pred HHHHhhhhhhhcCcCCeEEE
Confidence 22223333444555555443
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.41 E-value=1.5e-14 Score=157.30 Aligned_cols=126 Identities=25% Similarity=0.312 Sum_probs=108.6
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
|+||.|.|.+|. ....+..|..||||+|+|+.++. |..|..|++|+|++|+|+.+.. ..|..+.+|+.|||++|.
T Consensus 298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e-~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE-GAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred hccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh-hHHHHhhhhhhhcCcCCe
Confidence 999999999876 78889999999999999999988 9999999999999999998743 568889999999999999
Q ss_pred CCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 614 IGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 614 I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
|+..--|....+..++.+..+.+.||.+..+.. .+|.++ +|++|||.+|+|
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k----------rAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK----------RAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred EEEEEecchhhhccchhhhheeecCceeeecch----------hhhccCcccceecCCCCcc
Confidence 977644455556667777777888998876543 589999 999999999999
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.30 E-value=9.8e-11 Score=137.03 Aligned_cols=170 Identities=14% Similarity=-0.028 Sum_probs=156.2
Q ss_pred cHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 005381 41 SKEAVELSTKLLET---NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK 117 (699)
Q Consensus 41 ~~eaL~~~~~~L~~---nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~ 117 (699)
.++|++++++++.. .|+...+|+.++.+....++ +++++..+++++..+|++..+|..+++++..
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~------------~~eA~~~~~kal~l~P~~~~~~~~la~~~~~ 377 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGK------------HLEALADLSKSIELDPRVTQSYIKRASMNLE 377 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 37899999999987 48888999999999887765 8999999999999999999999999999987
Q ss_pred CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCcc
Q 005381 118 GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFV 197 (699)
Q Consensus 118 ~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~ 197 (699)
. +.+++++..++++++.+|.+..+|.+++.+....|.+ ++++++++++++.+|.+..+|.+++.++..++.
T Consensus 378 ~-g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~------- 448 (615)
T TIGR00990 378 L-GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEF-AQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS------- 448 (615)
T ss_pred C-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC-------
Confidence 7 6999999999999999999999999999999999998 789999999999999999999999999887754
Q ss_pred chhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCC
Q 005381 198 SKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (699)
Q Consensus 198 ~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~ 236 (699)
+++++..+.+++..+|++..+|+++..++....+
T Consensus 449 -----~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 449 -----IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK 482 (615)
T ss_pred -----HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 8999999999999999999999999888866443
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.29 E-value=1.5e-10 Score=135.50 Aligned_cols=163 Identities=13% Similarity=0.017 Sum_probs=150.0
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 005381 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L 115 (699)
..|.+ ++|+..+.++|.++|++..+|..++.++..+++ +++++..+++++..+|++..+|++|+.+.
T Consensus 343 ~~g~~-~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~------------~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 343 LKGKH-LEALADLSKSIELDPRVTQSYIKRASMNLELGD------------PDKAEEDFDKALKLNSEDPDIYYHRAQLH 409 (615)
T ss_pred HcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35666 799999999999999999999999999988765 89999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccC
Q 005381 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (699)
Q Consensus 116 ~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~ 195 (699)
... +.+++++.+++++++++|.+..+|..++.+...+|.+ ++.+.++.++++.+|.+..+|.+++.++...++
T Consensus 410 ~~~-g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~-~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~----- 482 (615)
T TIGR00990 410 FIK-GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSI-ASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK----- 482 (615)
T ss_pred HHc-CCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC-----
Confidence 877 6999999999999999999999999999999999998 689999999999999999999999999887654
Q ss_pred ccchhchHHHHHHHHHHHHHhCCCCchhHH
Q 005381 196 FVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (699)
Q Consensus 196 ~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~ 225 (699)
++++++.+.+|+.++|++...|.
T Consensus 483 -------~~~A~~~~~~Al~l~p~~~~~~~ 505 (615)
T TIGR00990 483 -------FDEAIEKFDTAIELEKETKPMYM 505 (615)
T ss_pred -------HHHHHHHHHHHHhcCCccccccc
Confidence 89999999999999998765543
No 16
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.26 E-value=8.5e-13 Score=133.77 Aligned_cols=159 Identities=21% Similarity=0.253 Sum_probs=124.3
Q ss_pred CCcHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCCc
Q 005381 476 SHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKLL 555 (699)
Q Consensus 476 ~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L~ 555 (699)
|...+....++.|+++|+|+|. +..+. ..+.-+..++ .|++|+|+|..++.+..|+
T Consensus 274 G~~~~~~dTWq~LtelDLS~N~----------I~~iD-------ESvKL~Pkir-------~L~lS~N~i~~v~nLa~L~ 329 (490)
T KOG1259|consen 274 GSALVSADTWQELTELDLSGNL----------ITQID-------ESVKLAPKLR-------RLILSQNRIRTVQNLAELP 329 (490)
T ss_pred CceEEecchHhhhhhccccccc----------hhhhh-------hhhhhcccee-------EEeccccceeeehhhhhcc
Confidence 4444456788999999999998 22222 2222223333 3999999999999999999
Q ss_pred ccCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccc
Q 005381 556 WVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSV 634 (699)
Q Consensus 556 ~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll 634 (699)
+|+.||||+|.++.+.+ -.+|.++++|.|+.|.|.++ .++.++.+|..||+++|+|..+. .
T Consensus 330 ~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ld--e------------- 391 (490)
T KOG1259|consen 330 QLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL---SGLRKLYSLVNLDLSSNQIEELD--E------------- 391 (490)
T ss_pred cceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh---hhhHhhhhheeccccccchhhHH--H-------------
Confidence 99999999999999999 88899999999999999887 77899999999999999998873 1
Q ss_pred cCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC-CCccchHHHhhcCC---ccccccCcc
Q 005381 635 GSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI-VNEKFKSFLIKVLP---GLKWLDGEQ 697 (699)
Q Consensus 635 ~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~~~~~~~~~~~l~---~L~~LD~~~ 697 (699)
...++++ .|++|.|.+||| ..++++..+++.+. +=-.||+.+
T Consensus 392 ---------------------V~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGERaSE~~LD~~~ 438 (490)
T KOG1259|consen 392 ---------------------VNHIGNLPCLETLRLTGNPLAGSVDYRTKVLARFGERASEISLDNEP 438 (490)
T ss_pred ---------------------hcccccccHHHHHhhcCCCccccchHHHHHHHHHhhhhhheecCCCC
Confidence 2356667 899999999999 66788887776552 223466643
No 17
>PF07711 RabGGT_insert: Rab geranylgeranyl transferase alpha-subunit, insert domain ; InterPro: IPR009087 Rab geranylgeranyltransferase (RabGGT) catalyses the transfer of geranylgeranyl groups to the C-terminal cysteine residues of Rab proteins, Ras-related small GTPases that function in intracellular vesicular transport []. RabGGT is only able to prenylate Rab when it is complexed to the Rab escort protein (REP), after which REP remains bound to the prenylated Rab and delivers it to its target membrane. RabGGT is a member of the protein prenyltransferase family (IPR008940 from INTERPRO), all of which are heterodimers consisting of alpha and beta subunits. RabGGT is distinct from other members of the prenyltransferase family because of the presence of an Ig-like insert domain in the alpha subunit that is folded into an eight-stranded sandwich between two helices in the helical domain.; GO: 0004663 Rab geranylgeranyltransferase activity, 0008270 zinc ion binding; PDB: 1DCE_C 1LTX_A.
Probab=99.22 E-value=9.1e-12 Score=105.36 Aligned_cols=93 Identities=19% Similarity=0.312 Sum_probs=62.7
Q ss_pred ccccCCCCCCCccccCCCCccceEEeeccccccccccceEEecccCC-CccceeeeCCCCCCccceeEEEeccCCCCCCC
Q 005381 259 RCLDGCASSPFTRFHLDSRTFPLVLYFNQAVEGVNSSTITVDSELNT-NKDLVWKPLSSCNSKAAQVWVTQLNLPDGNTH 337 (699)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~w~~~~~~~~~~~~ 337 (699)
.|+|+ +.|.++ +.++|++||.+ ++.++...+++ |+.|+|+.++.+ .++|++|+++|+...
T Consensus 4 rCl~V---------Sr~e~~--l~V~FSrPv~v---~~~~LlL~~D~~Pl~VeWRtp~gr-~r~s~vWlcdLP~~s---- 64 (102)
T PF07711_consen 4 RCLHV---------SRDEAC--LTVAFSRPVNV---GSETLLLFVDGSPLTVEWRTPDGR-NRPSHVWLCDLPAGS---- 64 (102)
T ss_dssp EEEEE---------ETTTTE--EEEEEEEEE-S---TTB-EEEEESSSEE----B-TTSS---SEEEEEEE--GGG----
T ss_pred EEEEE---------ecccCe--EEEEecceeee---eeeeEEEEEcCCceEEEeeCCCCC-CCcCeEEEEeCCccc----
Confidence 57888 577777 89999999987 33345555555 899999999854 589999999999832
Q ss_pred CCCccceEEecCcccccccCCCCccCCCccceEEEEEeeccc--ccccccccceeeccC
Q 005381 338 SSKVFPVEVSLGHSQGIISSSGFHYSNPFCFAFRVSLQFVET--QPVEALGKEIISWRD 394 (699)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 394 (699)
| ++ ..|+| +|+|.|.++++ ||+++ .|..++|.+
T Consensus 65 ----------------l-nd-----~~~qh-~f~v~W~~g~~~keCvL~-~Gr~E~WcR 99 (102)
T PF07711_consen 65 ----------------L-ND-----QRPQH-TFTVHWTAGDAQKECVLY-KGRRESWCR 99 (102)
T ss_dssp ----------------T-ST-----TSSEE-EEEEEETTTTEEEEEEEE-TT-SEEEEE
T ss_pred ----------------c-CC-----CCCce-EEEEEEcCCcccceEEEe-CCCccceec
Confidence 1 33 46777 89999999988 99998 899999943
No 18
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.21 E-value=2.5e-10 Score=108.26 Aligned_cols=126 Identities=10% Similarity=-0.063 Sum_probs=115.9
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHH
Q 005381 46 ELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNE 125 (699)
Q Consensus 46 ~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~E 125 (699)
.+++++|.++|++ |..++.++...++ +++++..++.++..+|.++.+|..++-++... ++++++
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~------------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-g~~~~A 77 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGD------------YSRAVIDFSWLVMAQPWSWRAHIALAGTWMML-KEYTTA 77 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-hhHHHH
Confidence 4688999999996 5568888887765 89999999999999999999999999999987 699999
Q ss_pred HHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Q 005381 126 LRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNL 188 (699)
Q Consensus 126 L~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l 188 (699)
+.+|+++++++|.+..+|.+++.++..+|.+ +++++.+.++|+.+|.|..+|..|+.+...+
T Consensus 78 ~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~-~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 78 INFYGHALMLDASHPEPVYQTGVCLKMMGEP-GLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 7899999999999999999999999876654
No 19
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.17 E-value=3.5e-10 Score=107.24 Aligned_cols=125 Identities=8% Similarity=-0.091 Sum_probs=115.4
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 005381 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (699)
Q Consensus 92 ~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n 171 (699)
+.++++++.+|.+ |.++++++.+. +.+++++++|++++..+|.+..+|..++.++..+|.+ ++.++++.++++.+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQE-GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY-TTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcC
Confidence 5789999999986 67889999877 6999999999999999999999999999999999999 78999999999999
Q ss_pred cCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 172 FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 172 ~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
|.+..+|++++.++..+++ ++++++.++.|+..+|+|...|..+......
T Consensus 89 p~~~~a~~~lg~~l~~~g~------------~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGE------------PGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCcHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999998866 7999999999999999999999888776643
No 20
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.16 E-value=1.9e-11 Score=150.27 Aligned_cols=198 Identities=18% Similarity=0.103 Sum_probs=104.6
Q ss_pred CCCcHHHHHhcccccccCCCCCccccchhhhHH----hhhhc---cch-HHHhhhhccCCCCCCCCCCCCeEEccCCCCC
Q 005381 475 ISHSEEVLELYNDLMRLDPTHVQYYKDQHSLVL----LQQVT---SNW-ESLLSRCFHYSNSPSNRGSPMCLQLKNLSLS 546 (699)
Q Consensus 475 ~~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~----l~~l~---~~~-~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~ 546 (699)
.+..+..++.+.+|++||+++|.+...++..+. ++.+. +.+ ..++..+..+.+++. |+|++|.++
T Consensus 153 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~-------L~L~~n~l~ 225 (968)
T PLN00113 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW-------IYLGYNNLS 225 (968)
T ss_pred cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE-------EECcCCccC
Confidence 445566778888888888888874333222110 00000 000 011122222222222 666666665
Q ss_pred -ccc-CCCCCcccCEEEccCCCCC-CCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccc
Q 005381 547 -RLG-SFDKLLWVQMLDLSHNELR-SIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTT 622 (699)
Q Consensus 547 -~l~-~l~~L~~L~~LdLS~N~L~-~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~ 622 (699)
.++ .+..+++|++|+|++|.+. .+|. +..+++|+.|++++|.+++. .|..+..+++|+.|+|++|.+.... +
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~---p 301 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISLDLSDNSLSGEI---P 301 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc-CchhHhhccCcCEEECcCCeeccCC---C
Confidence 233 5666666666666666663 4444 66666666666666666543 3455566666666666666665431 1
Q ss_pred cccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCccccccC
Q 005381 623 KYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWLDG 695 (699)
Q Consensus 623 ~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~LD~ 695 (699)
..+..++.+..+.+.+|.+.. ..|..+..+ +|+.|+|++|.+.. .. +..+..+++|+.||-
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~----------~~~~~~~~l~~L~~L~L~~n~l~~-~~-p~~l~~~~~L~~L~L 363 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTG----------KIPVALTSLPRLQVLQLWSNKFSG-EI-PKNLGKHNNLTVLDL 363 (968)
T ss_pred hhHcCCCCCcEEECCCCccCC----------cCChhHhcCCCCCEEECcCCCCcC-cC-ChHHhCCCCCcEEEC
Confidence 122222223333444444322 235567778 88888888888821 11 123455777777663
No 21
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.13 E-value=3.8e-12 Score=133.60 Aligned_cols=211 Identities=19% Similarity=0.228 Sum_probs=109.3
Q ss_pred CCccccccccccccCccchhhhhHHHHHHHHHHHHhhhh----------ccccccccccHHHHHhhcccCCCCCCCcCCC
Q 005381 408 SPISSLYQLSIKNDNELTDFEWRAATIAKEIDHFRELLS----------LINCKIGKLTLARLLMAHDAMMCPPANKISH 477 (699)
Q Consensus 408 ~~l~~~~~lsi~~~~~~~~~~~~~~~L~~el~~~~~L~~----------~p~nk~~~Ltl~~ll~~~~~l~~~~~~~~~~ 477 (699)
+.+..+.+|.| |...+..||+|+.+...|.. .|+.....+.+..+... .+....
T Consensus 88 g~l~~l~~l~v--------s~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~--------~N~i~s 151 (565)
T KOG0472|consen 88 GELEALKSLNV--------SHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT--------NNQISS 151 (565)
T ss_pred HHHHHHHHhhc--------ccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc--------cccccc
Confidence 34455556666 56677788888887776655 22222222222222222 222345
Q ss_pred cHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCccc-CCCCCcc
Q 005381 478 SEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLG-SFDKLLW 556 (699)
Q Consensus 478 ~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~-~l~~L~~ 556 (699)
.++.+..+.+|..+|+..|....-...... +..+.. ++...|-++.+| .++.|..
T Consensus 152 lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-----------------m~~L~~-------ld~~~N~L~tlP~~lg~l~~ 207 (565)
T KOG0472|consen 152 LPEDMVNLSKLSKLDLEGNKLKALPENHIA-----------------MKRLKH-------LDCNSNLLETLPPELGGLES 207 (565)
T ss_pred CchHHHHHHHHHHhhccccchhhCCHHHHH-----------------HHHHHh-------cccchhhhhcCChhhcchhh
Confidence 566677788888888888773221111111 111111 555555555554 5555555
Q ss_pred cCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccccC
Q 005381 557 VQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGS 636 (699)
Q Consensus 557 L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l 636 (699)
|..|+|.+|+|..+|.|.++..|..|.++.|+|+-++. +....+++|.+|||..|++++.|.. +|.+..+..+++
T Consensus 208 L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpa-e~~~~L~~l~vLDLRdNklke~Pde----~clLrsL~rLDl 282 (565)
T KOG0472|consen 208 LELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPA-EHLKHLNSLLVLDLRDNKLKEVPDE----ICLLRSLERLDL 282 (565)
T ss_pred hHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHH-HHhcccccceeeeccccccccCchH----HHHhhhhhhhcc
Confidence 55555555555555555555555555555555554422 2233555555555555555555421 222222222344
Q ss_pred CCCccceeecCCcchhhhhhccCCCCCccEEEecCCCC
Q 005381 637 EWNHGQTVIDDDIKSYWEAYFILKGLNLTQFDIVGNAI 674 (699)
Q Consensus 637 ~~N~l~~~~~~~~~~~~~~p~~l~~L~L~~LdLs~N~l 674 (699)
++|.++. .|..++++.|+.|-+.|||+
T Consensus 283 SNN~is~-----------Lp~sLgnlhL~~L~leGNPl 309 (565)
T KOG0472|consen 283 SNNDISS-----------LPYSLGNLHLKFLALEGNPL 309 (565)
T ss_pred cCCcccc-----------CCcccccceeeehhhcCCch
Confidence 4444432 23456666788888889988
No 22
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=2.4e-09 Score=123.64 Aligned_cols=179 Identities=9% Similarity=-0.034 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~ 121 (699)
++|++++.+++.++|++..+|...+.+...+......+ ....+.+++..++++++.+|++..+|..++.++... +.
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~---~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~-g~ 353 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFD---KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH-SE 353 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcc---cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-cC
Confidence 69999999999999999999988887655443200000 124579999999999999999999999999988866 58
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhc
Q 005381 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEK 201 (699)
Q Consensus 122 ~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~ 201 (699)
+++++..++++++++|.+..+|.+.+.++...|.+ ++.++.++++++.+|.+..++.++..++...+
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~-~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g------------ 420 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQL-EEALQTINECLKLDPTRAAAGITKLWITYYHT------------ 420 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc------------
Confidence 99999999999999999999999999999999998 67999999999999998877666665544432
Q ss_pred hHHHHHHHHHHHHHhC-CCCchhHHHHHHHHcCcCCC
Q 005381 202 VLPDEYEFVHQAIFTD-PDDQSGWFYHLWLLDQTVRV 237 (699)
Q Consensus 202 ~~~eeL~~~~~ai~~d-P~d~SaW~Y~~~Ll~~~~~~ 237 (699)
.++++++.+.+++... |++..++.++..++....+.
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH 457 (553)
T ss_pred CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH
Confidence 2789999999999885 78888888888777554443
No 23
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.10 E-value=1.2e-10 Score=143.19 Aligned_cols=141 Identities=25% Similarity=0.232 Sum_probs=97.4
Q ss_pred EEccCCCCC-ccc-CCCCCcccCEEEccCCCC-CCCcC-CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLS-RLG-SFDKLLWVQMLDLSHNEL-RSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~-~l~-~l~~L~~L~~LdLS~N~L-~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
|+|++|.++ .++ .++.+++|++|+|++|.+ +.+|. +.++++|+.|+|++|.+++. .|..++.+++|+.|+|++|.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc-CChHHcCcCCccEEECcCCc
Confidence 888888876 344 677888888888888887 45666 88888888888888888764 45677888888888888888
Q ss_pred CCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCcccc
Q 005381 614 IGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKW 692 (699)
Q Consensus 614 I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~ 692 (699)
+.... +..+..+.-+..+++++|.+.. ..|..++++ +|+.|+|++|.+.. .. +..+..+++|+.
T Consensus 224 l~~~~---p~~l~~l~~L~~L~L~~n~l~~----------~~p~~l~~l~~L~~L~L~~n~l~~-~~-p~~l~~l~~L~~ 288 (968)
T PLN00113 224 LSGEI---PYEIGGLTSLNHLDLVYNNLTG----------PIPSSLGNLKNLQYLFLYQNKLSG-PI-PPSIFSLQKLIS 288 (968)
T ss_pred cCCcC---ChhHhcCCCCCEEECcCceecc----------ccChhHhCCCCCCEEECcCCeeec-cC-chhHhhccCcCE
Confidence 86431 1223333334444555555422 346788889 99999999999821 11 122345778877
Q ss_pred cc
Q 005381 693 LD 694 (699)
Q Consensus 693 LD 694 (699)
||
T Consensus 289 L~ 290 (968)
T PLN00113 289 LD 290 (968)
T ss_pred EE
Confidence 75
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.08 E-value=1.1e-11 Score=116.68 Aligned_cols=78 Identities=23% Similarity=0.400 Sum_probs=63.9
Q ss_pred EEccCCCCCccc-CCCCCcccCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCC
Q 005381 538 LQLKNLSLSRLG-SFDKLLWVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIG 615 (699)
Q Consensus 538 L~Ls~n~l~~l~-~l~~L~~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~ 615 (699)
|-||+|.++.++ .+..+.+|+.|++++|+|..+|. ++.|+.|+.|+++-|++..+ |.+|+.++.|++|||++|++.
T Consensus 38 LtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~l--prgfgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNIL--PRGFGSFPALEVLDLTYNNLN 115 (264)
T ss_pred hhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcC--ccccCCCchhhhhhccccccc
Confidence 777888888776 78888888888888888888888 88888888888888888766 678888888888888888885
Q ss_pred CC
Q 005381 616 AH 617 (699)
Q Consensus 616 ~l 617 (699)
.-
T Consensus 116 e~ 117 (264)
T KOG0617|consen 116 EN 117 (264)
T ss_pred cc
Confidence 53
No 25
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=6.4e-09 Score=110.63 Aligned_cols=175 Identities=14% Similarity=0.066 Sum_probs=90.8
Q ss_pred CCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 005381 39 IYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG 118 (699)
Q Consensus 39 ~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~ 118 (699)
...++|+..+.++|..+|++..+|+.++.++...++ +++++..++++++.+|++..+|..|+.++...
T Consensus 78 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~------------~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 78 GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGN------------FDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 345566666666666666666666666666665543 56666666666666666666666666666554
Q ss_pred CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccc
Q 005381 119 HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVS 198 (699)
Q Consensus 119 ~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~ 198 (699)
++++++++.++++++++|.+.....+. .+....+.+ +++++.+.+.+...+.++.+|..... .+++ ..
T Consensus 146 -g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~-~~A~~~l~~~~~~~~~~~~~~~~~~~---~lg~------~~ 213 (296)
T PRK11189 146 -GRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDP-KQAKENLKQRYEKLDKEQWGWNIVEF---YLGK------IS 213 (296)
T ss_pred -CCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCH-HHHHHHHHHHHhhCCccccHHHHHHH---HccC------CC
Confidence 466666666666666666654211111 112222333 44555555544443322222221111 1111 01
Q ss_pred hhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCCC
Q 005381 199 KEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRV 237 (699)
Q Consensus 199 ~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~~ 237 (699)
..+.++...+.+..++..+|....+|+|+..++....+.
T Consensus 214 ~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~ 252 (296)
T PRK11189 214 EETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDL 252 (296)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 112233333444455566677777777777777665443
No 26
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=5.2e-09 Score=111.31 Aligned_cols=164 Identities=13% Similarity=0.018 Sum_probs=113.8
Q ss_pred cHHHHHHHHHHHHhC---CCc-hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005381 41 SKEAVELSTKLLETN---PEL-YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (699)
Q Consensus 41 ~~eaL~~~~~~L~~n---P~~-ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~ 116 (699)
.+.++..+.++|... |+. ..+|+.|+.+....+. +.+++..++++++.+|+++.+|++++.++.
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~------------~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~ 109 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGL------------RALARNDFSQALALRPDMADAYNYLGIYLT 109 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 466777777777533 333 5677788887777754 677888888888888888888888888887
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchH--HHHHHHHHHHHhhhhhcc
Q 005381 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYS--AWHNRSLLLSNLLKRKVE 194 (699)
Q Consensus 117 ~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~S--AW~~R~~ll~~l~~~~~~ 194 (699)
.. ++++++++.++++++++|.+..+|..|+.++...|++ ++.++.++++++.+|.+.. .|.+.. ...
T Consensus 110 ~~-g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~-~eA~~~~~~al~~~P~~~~~~~~~~l~---~~~------ 178 (296)
T PRK11189 110 QA-GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRY-ELAQDDLLAFYQDDPNDPYRALWLYLA---ESK------ 178 (296)
T ss_pred HC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHH---Hcc------
Confidence 66 5888888888888888888888888888888878877 6778888888888887752 222111 111
Q ss_pred CccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 195 GFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 195 ~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
..++++++.+.+++...+.+...|......++.
T Consensus 179 ------~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~ 211 (296)
T PRK11189 179 ------LDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGK 211 (296)
T ss_pred ------CCHHHHHHHHHHHHhhCCccccHHHHHHHHccC
Confidence 125777777776665544444455544444444
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.02 E-value=1.1e-10 Score=133.67 Aligned_cols=209 Identities=23% Similarity=0.216 Sum_probs=142.7
Q ss_pred hhhhHHHHHHHHHHHHhhhhccccccccccHHHHHhhcccCCCCCCCcCCCcHHHHHhcccccccCCCCCccccchhhhH
Q 005381 427 FEWRAATIAKEIDHFRELLSLINCKIGKLTLARLLMAHDAMMCPPANKISHSEEVLELYNDLMRLDPTHVQYYKDQHSLV 506 (699)
Q Consensus 427 ~~~~~~~L~~el~~~~~L~~~p~nk~~~Ltl~~ll~~~~~l~~~~~~~~~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~ 506 (699)
++..+..++.++.....|.. +..+.+. ..++++.++.++.|.+||+..|+. .+++..+
T Consensus 272 n~N~l~~lp~ri~~~~~L~~-------------l~~~~ne--------l~yip~~le~~~sL~tLdL~~N~L-~~lp~~~ 329 (1081)
T KOG0618|consen 272 NHNRLVALPLRISRITSLVS-------------LSAAYNE--------LEYIPPFLEGLKSLRTLDLQSNNL-PSLPDNF 329 (1081)
T ss_pred cchhHHhhHHHHhhhhhHHH-------------HHhhhhh--------hhhCCCcccccceeeeeeehhccc-cccchHH
Confidence 44455666666655555553 4555333 478888888899999999998873 3333211
Q ss_pred HhhhhccchHHHhhhhccCCCCCCCC---CCC-CeEEccCCCCCc--ccCCCCCcccCEEEccCCCCCCCcC--Cccccc
Q 005381 507 LLQQVTSNWESLLSRCFHYSNSPSNR---GSP-MCLQLKNLSLSR--LGSFDKLLWVQMLDLSHNELRSIEG--LEALQL 578 (699)
Q Consensus 507 ~l~~l~~~~~~l~~~~~~l~~l~~l~---L~~-~~L~Ls~n~l~~--l~~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~ 578 (699)
.. ........+...+..+..+.... ... +.|++.+|.++. +|.+.+..+|+.|+|++|+|+++|. +.+|..
T Consensus 330 l~-v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~ 408 (1081)
T KOG0618|consen 330 LA-VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE 408 (1081)
T ss_pred Hh-hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHH
Confidence 10 00000111222222222221110 000 447889999984 5689999999999999999999999 999999
Q ss_pred cceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhcc
Q 005381 579 LSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFI 658 (699)
Q Consensus 579 L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~ 658 (699)
|+.|+||+|+++.+ |..+..|..|++|...+|+|..+| .+..++-++.++++.|.++...+ |..
T Consensus 409 LeeL~LSGNkL~~L--p~tva~~~~L~tL~ahsN~l~~fP-----e~~~l~qL~~lDlS~N~L~~~~l---------~~~ 472 (1081)
T KOG0618|consen 409 LEELNLSGNKLTTL--PDTVANLGRLHTLRAHSNQLLSFP-----ELAQLPQLKVLDLSCNNLSEVTL---------PEA 472 (1081)
T ss_pred hHHHhcccchhhhh--hHHHHhhhhhHHHhhcCCceeech-----hhhhcCcceEEecccchhhhhhh---------hhh
Confidence 99999999999998 578899999999999999999986 34455666777888888754432 333
Q ss_pred CCCCCccEEEecCCCC
Q 005381 659 LKGLNLTQFDIVGNAI 674 (699)
Q Consensus 659 l~~L~L~~LdLs~N~l 674 (699)
...-+|++|||+||.-
T Consensus 473 ~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 473 LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred CCCcccceeeccCCcc
Confidence 3323899999999983
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=99.01 E-value=1.6e-08 Score=116.96 Aligned_cols=162 Identities=12% Similarity=-0.020 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~ 121 (699)
++|+..+.+++.++|++..+|..++.++...++ +++++..++++++.+|++..+|++.++++... +.
T Consensus 321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~------------~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~-G~ 387 (553)
T PRK12370 321 IKAKEHAIKATELDHNNPQALGLLGLINTIHSE------------YIVGSLLFKQANLLSPISADIKYYYGWNLFMA-GQ 387 (553)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CC
Confidence 799999999999999999999999998877754 89999999999999999999999999999977 69
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHhhhhhccCccchh
Q 005381 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN-FSNYSAWHNRSLLLSNLLKRKVEGFVSKE 200 (699)
Q Consensus 122 ~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n-~sN~SAW~~R~~ll~~l~~~~~~~~~~~~ 200 (699)
+++++..++++++++|.+..++.++.++.-..+.+ +++++.+.++++.+ |.+..++.+.+.++..+++
T Consensus 388 ~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~-eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~---------- 456 (553)
T PRK12370 388 LEEALQTINECLKLDPTRAAAGITKLWITYYHTGI-DDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK---------- 456 (553)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCH-HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC----------
Confidence 99999999999999999988777778877778887 77888999999886 6777788888888877655
Q ss_pred chHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005381 201 KVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (699)
Q Consensus 201 ~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~ 229 (699)
++++.+.+.++....|++..++....-
T Consensus 457 --~~eA~~~~~~~~~~~~~~~~~~~~l~~ 483 (553)
T PRK12370 457 --HELARKLTKEISTQEITGLIAVNLLYA 483 (553)
T ss_pred --HHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 789999998888888887777775443
No 29
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.01 E-value=2.1e-11 Score=114.91 Aligned_cols=122 Identities=20% Similarity=0.223 Sum_probs=70.9
Q ss_pred EEccCCCCCccc-CCCCCcccCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCC
Q 005381 538 LQLKNLSLSRLG-SFDKLLWVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIG 615 (699)
Q Consensus 538 L~Ls~n~l~~l~-~l~~L~~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~ 615 (699)
|++.+|+|+.+| .++.++.|+.|+++.|++..+|. |+.++.|+.|||++|.+..-..|..|..+..|+.|.|+.|.+.
T Consensus 61 ln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe 140 (264)
T KOG0617|consen 61 LNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE 140 (264)
T ss_pred hhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc
Confidence 566666666665 66666666666666666666666 6666666666666666655444555666666666666666666
Q ss_pred CCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 616 AHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 616 ~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
-+|.+. ..+..+..+.+.. +.....|..++.+ .|+.|.+.+|.+
T Consensus 141 ~lp~dv----g~lt~lqil~lrd-----------ndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 141 ILPPDV----GKLTNLQILSLRD-----------NDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred cCChhh----hhhcceeEEeecc-----------CchhhCcHHHHHHHHHHHHhccccee
Confidence 665321 1111111111121 2223445666666 777777777766
No 30
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.00 E-value=2.2e-11 Score=127.98 Aligned_cols=239 Identities=18% Similarity=0.114 Sum_probs=130.2
Q ss_pred hhhhHHHHHHHHHHHHhhhhccccccccccHHHHHhhcccCCCCCCCcCCCcHHHHHhcccccccCCCCCccccchhh--
Q 005381 427 FEWRAATIAKEIDHFRELLSLINCKIGKLTLARLLMAHDAMMCPPANKISHSEEVLELYNDLMRLDPTHVQYYKDQHS-- 504 (699)
Q Consensus 427 ~~~~~~~L~~el~~~~~L~~~p~nk~~~Ltl~~ll~~~~~l~~~~~~~~~~~~~~l~~l~~L~~LDls~n~~~~~l~s-- 504 (699)
|+-.++..|.|+..|.....+.++.|...++..+..+.+.+ ....+-+.++..|++|+..+|+..+-...
T Consensus 17 snr~l~~vp~~vyq~~~t~~e~e~wW~qv~l~~lils~N~l--------~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig 88 (565)
T KOG0472|consen 17 SNRSLKDVPTEVYQINLTTGEGENWWEQVDLQKLILSHNDL--------EVLREDLKNLACLTVLNVHDNKLSQLPAAIG 88 (565)
T ss_pred ccchhhhccHHHHHHHhhccchhhhhhhcchhhhhhccCch--------hhccHhhhcccceeEEEeccchhhhCCHHHH
Confidence 45577888999999996666999999999988888886654 45555566677777777777764322221
Q ss_pred ----hHHhhhhccchHHHhhhhccCCCCCCCCCCC----------------CeEEccCCCCCccc-CCCCCcccCEEEcc
Q 005381 505 ----LVLLQQVTSNWESLLSRCFHYSNSPSNRGSP----------------MCLQLKNLSLSRLG-SFDKLLWVQMLDLS 563 (699)
Q Consensus 505 ----l~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~----------------~~L~Ls~n~l~~l~-~l~~L~~L~~LdLS 563 (699)
+..+......+..+++....+..+..+..++ ..++..+|.++++| .+..+..|..|++.
T Consensus 89 ~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~ 168 (565)
T KOG0472|consen 89 ELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLE 168 (565)
T ss_pred HHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcc
Confidence 1111112222233333333222222211000 01333444444444 44444555555555
Q ss_pred CCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccccCCCCccc
Q 005381 564 HNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQ 642 (699)
Q Consensus 564 ~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~ 642 (699)
+|++..+|+ .-.+..|+.||...|-++.+ |+.++.+.+|.-|+|..|+|..+| .+.+.+++.-+....|.+
T Consensus 169 ~n~l~~l~~~~i~m~~L~~ld~~~N~L~tl--P~~lg~l~~L~~LyL~~Nki~~lP-----ef~gcs~L~Elh~g~N~i- 240 (565)
T KOG0472|consen 169 GNKLKALPENHIAMKRLKHLDCNSNLLETL--PPELGGLESLELLYLRRNKIRFLP-----EFPGCSLLKELHVGENQI- 240 (565)
T ss_pred ccchhhCCHHHHHHHHHHhcccchhhhhcC--ChhhcchhhhHHHHhhhcccccCC-----CCCccHHHHHHHhcccHH-
Confidence 555555544 33355555555555555554 455666666666666666666655 122222222223334443
Q ss_pred eeecCCcchhhhhhccC-CCC-CccEEEecCCCC-CCccchHHHhhcCCccccccC
Q 005381 643 TVIDDDIKSYWEAYFIL-KGL-NLTQFDIVGNAI-VNEKFKSFLIKVLPGLKWLDG 695 (699)
Q Consensus 643 ~~~~~~~~~~~~~p~~l-~~L-~L~~LdLs~N~l-~~~~~~~~~~~~l~~L~~LD~ 695 (699)
..+|... +++ +|..|||.+|++ ..|+- + -.+.+|.+||-
T Consensus 241 ----------~~lpae~~~~L~~l~vLDLRdNklke~Pde---~-clLrsL~rLDl 282 (565)
T KOG0472|consen 241 ----------EMLPAEHLKHLNSLLVLDLRDNKLKEVPDE---I-CLLRSLERLDL 282 (565)
T ss_pred ----------HhhHHHHhcccccceeeeccccccccCchH---H-HHhhhhhhhcc
Confidence 3344444 478 999999999999 43332 1 23567777764
No 31
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=3.3e-09 Score=118.13 Aligned_cols=182 Identities=14% Similarity=0.118 Sum_probs=134.3
Q ss_pred CCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 005381 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK 117 (699)
Q Consensus 38 ~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~ 117 (699)
+++ +.|++++.++++++|.+.-|+---|.=.... ..++.++.+|..+|..+|.+|-||+.-|.+..+
T Consensus 435 kdh-~~Aik~f~RAiQldp~faYayTLlGhE~~~~------------ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 435 KDH-DTAIKCFKRAIQLDPRFAYAYTLLGHESIAT------------EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred hHH-HHHHHHHHHhhccCCccchhhhhcCChhhhh------------HHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence 444 5778888888888886654433222111111 237888888888888888888888888888876
Q ss_pred CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCcc
Q 005381 118 GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFV 197 (699)
Q Consensus 118 ~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~ 197 (699)
. +.++.+.-.+.+|++++|+|-.--.|-|-+..++|.. +++|+++++|+..||.|.-.=++|+.++..+++
T Consensus 502 q-ek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~-d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~------- 572 (638)
T KOG1126|consen 502 Q-EKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK-DKALQLYEKAIHLDPKNPLCKYHRASILFSLGR------- 572 (638)
T ss_pred c-chhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh-hHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc-------
Confidence 6 5788888888888888888888888888888888887 678888888888888888888888888888865
Q ss_pred chhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCCCCCCcccccC
Q 005381 198 SKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRVDSPQLVSSW 246 (699)
Q Consensus 198 ~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~~~~~~~~~~~ 246 (699)
|++|+..+++.-..-|++.++.+-..-...+..+.+.+++--.|
T Consensus 573 -----~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~ 616 (638)
T KOG1126|consen 573 -----YVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSW 616 (638)
T ss_pred -----hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHH
Confidence 67777777777778888888877665555555444545543344
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.94 E-value=4.7e-08 Score=118.62 Aligned_cols=168 Identities=6% Similarity=-0.130 Sum_probs=141.3
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~ 114 (699)
...|.+ ++|+.++.+++..+|++..+...-...+...+ .+++++..+++++..+|. ..+|...+.+
T Consensus 553 l~~Gd~-~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G------------r~~eAl~~~~~AL~l~P~-~~a~~~LA~~ 618 (987)
T PRK09782 553 QAAGNG-AARDRWLQQAEQRGLGDNALYWWLHAQRYIPG------------QPELALNDLTRSLNIAPS-ANAYVARATI 618 (987)
T ss_pred HHCCCH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC------------CHHHHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 445555 67888888888888887655543222222223 489999999999999996 9999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhcc
Q 005381 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVE 194 (699)
Q Consensus 115 L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~ 194 (699)
+.+. +.++++++++.++++++|.|..++...++++...|.+ +++++.+.++++.+|.+..+|.+++.++..+++
T Consensus 619 l~~l-G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~-eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd---- 692 (987)
T PRK09782 619 YRQR-HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI-AQSREMLERAHKGLPDDPALIRQLAYVNQRLDD---- 692 (987)
T ss_pred HHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC----
Confidence 9987 6999999999999999999999999999999999998 789999999999999999999999999988865
Q ss_pred CccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005381 195 GFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (699)
Q Consensus 195 ~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~L 230 (699)
++++++.+++|+..+|++...=+-..++
T Consensus 693 --------~~eA~~~l~~Al~l~P~~a~i~~~~g~~ 720 (987)
T PRK09782 693 --------MAATQHYARLVIDDIDNQALITPLTPEQ 720 (987)
T ss_pred --------HHHHHHHHHHHHhcCCCCchhhhhhhHH
Confidence 7999999999999999876655433333
No 33
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.94 E-value=1.9e-07 Score=93.09 Aligned_cols=175 Identities=13% Similarity=0.056 Sum_probs=149.3
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHH
Q 005381 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHR 111 (699)
Q Consensus 32 ~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR 111 (699)
......+.+ ++|++.+.+++..+|++..+|..++.+....++ +++++..+++++..+|++..+|...
T Consensus 39 ~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 39 LGYLEQGDL-EVAKENLDKALEHDPDDYLAYLALALYYQQLGE------------LEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred HHHHHCCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 334456666 799999999999999999999999998887765 8999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhC--CCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Q 005381 112 KWILSKGHSSIDNELRLLDKFQKAD--SRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLL 189 (699)
Q Consensus 112 ~w~L~~~~~~~~~EL~~~~k~L~~d--prN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~ 189 (699)
++++... +.++++++.++++++.. +....+|...+.+....+.+ ++..+++.++++.+|.+..+|...+.+....+
T Consensus 106 ~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 106 GTFLCQQ-GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDF-DKAEKYLTRALQIDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHc-ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence 9999877 69999999999999853 56677888889998888988 67899999999999999999988888777654
Q ss_pred hhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 190 KRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 190 ~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
. ++++++.+.+++...|.+...|.....+...
T Consensus 184 ~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (234)
T TIGR02521 184 Q------------YKDARAYLERYQQTYNQTAESLWLGIRIARA 215 (234)
T ss_pred C------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3 7899999999999988887777655555433
No 34
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.93 E-value=3.2e-08 Score=108.88 Aligned_cols=170 Identities=16% Similarity=0.087 Sum_probs=149.5
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~ 114 (699)
...|.. .||.++|.++|..+|.+..+-|.-+.+....+. ++++..+|.++|+.+|....+-+.-+-+
T Consensus 331 kd~G~V-~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~------------~e~A~~ly~~al~v~p~~aaa~nNLa~i 397 (966)
T KOG4626|consen 331 KDKGSV-TEAVDCYNKALRLCPNHADAMNNLGNIYREQGK------------IEEATRLYLKALEVFPEFAAAHNNLASI 397 (966)
T ss_pred Hhccch-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc------------chHHHHHHHHHHhhChhhhhhhhhHHHH
Confidence 344555 689999999999999999999888888877765 8899999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhcc
Q 005381 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVE 194 (699)
Q Consensus 115 L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~ 194 (699)
+++. +.+++++.+|+.+|+++|....|.+.+|-++..+|+. .+++++++++|.+||---.|..+.+.+.+.-|.
T Consensus 398 ~kqq-gnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v-~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn---- 471 (966)
T KOG4626|consen 398 YKQQ-GNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV-SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN---- 471 (966)
T ss_pred HHhc-ccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH-HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC----
Confidence 9876 6899999999999999999999999999999999988 689999999999999999999988877654432
Q ss_pred CccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005381 195 GFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 195 ~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll 231 (699)
..++|..|.+|+.++|+-..|..-+..-+
T Consensus 472 --------i~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 472 --------IPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred --------cHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 68999999999999999999988766554
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=2.8e-10 Score=124.50 Aligned_cols=159 Identities=26% Similarity=0.286 Sum_probs=120.1
Q ss_pred hhHHHHHHHHHHHHhhhhccccccccccHHHHHhhcccCCCCCCCcCCCcHHHHHhcccccccCCCCCccccchhhhHHh
Q 005381 429 WRAATIAKEIDHFRELLSLINCKIGKLTLARLLMAHDAMMCPPANKISHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLL 508 (699)
Q Consensus 429 ~~~~~L~~el~~~~~L~~~p~nk~~~Ltl~~ll~~~~~l~~~~~~~~~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l 508 (699)
.....+|++...|.-|.. +...++. ...+++.+..++.|+++|+++|+
T Consensus 85 NR~~elp~~~~~f~~Le~-------------liLy~n~--------~r~ip~~i~~L~~lt~l~ls~Nq----------- 132 (722)
T KOG0532|consen 85 NRFSELPEEACAFVSLES-------------LILYHNC--------IRTIPEAICNLEALTFLDLSSNQ----------- 132 (722)
T ss_pred cccccCchHHHHHHHHHH-------------HHHHhcc--------ceecchhhhhhhHHHHhhhccch-----------
Confidence 466778899888888874 4444444 36778888999999999999988
Q ss_pred hhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCccc-CCCCCcccCEEEccCCCCCCCcC-Cccccccceeeccc
Q 005381 509 QQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLG-SFDKLLWVQMLDLSHNELRSIEG-LEALQLLSCLNLSN 586 (699)
Q Consensus 509 ~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~-~l~~L~~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~ 586 (699)
+..++..+..+.- +.+.+++|+++.+| .++.+..|.+||.|.|.|.++|. +.+|.+|+.|++..
T Consensus 133 ------lS~lp~~lC~lpL--------kvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 133 ------LSHLPDGLCDLPL--------KVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred ------hhcCChhhhcCcc--------eeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh
Confidence 3334444333221 33778888888777 67777888888888888888887 88888888888888
Q ss_pred CCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-Ccc
Q 005381 587 NILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLT 665 (699)
Q Consensus 587 N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~ 665 (699)
|++..+ |..+..| .|..||+|.|+|..+|+ .|.+| .|+
T Consensus 199 n~l~~l--p~El~~L-pLi~lDfScNkis~iPv--------------------------------------~fr~m~~Lq 237 (722)
T KOG0532|consen 199 NHLEDL--PEELCSL-PLIRLDFSCNKISYLPV--------------------------------------DFRKMRHLQ 237 (722)
T ss_pred hhhhhC--CHHHhCC-ceeeeecccCceeecch--------------------------------------hhhhhhhhe
Confidence 888777 5666644 57888888888888763 67788 899
Q ss_pred EEEecCCCC
Q 005381 666 QFDIVGNAI 674 (699)
Q Consensus 666 ~LdLs~N~l 674 (699)
+|-|.+|++
T Consensus 238 ~l~LenNPL 246 (722)
T KOG0532|consen 238 VLQLENNPL 246 (722)
T ss_pred eeeeccCCC
Confidence 999999999
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=1e-08 Score=114.19 Aligned_cols=157 Identities=18% Similarity=0.096 Sum_probs=141.3
Q ss_pred CCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005381 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (699)
Q Consensus 37 ~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~ 116 (699)
..|+ +.|..++.++|..+|.||.||+.-|.+..+.++ ++.+.-.+++|+.+||.|-..-.|-+-++.
T Consensus 468 ~ee~-d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek------------~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~ 534 (638)
T KOG1126|consen 468 TEEF-DKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK------------LEFAEFHFQKAVEINPSNSVILCHIGRIQH 534 (638)
T ss_pred hHHH-HhHHHHHHhhhcCCchhhHHHHhhhhheeccch------------hhHHHHHHHhhhcCCccchhHHhhhhHHHH
Confidence 3445 799999999999999999999999999887765 899999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCc
Q 005381 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF 196 (699)
Q Consensus 117 ~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~ 196 (699)
++ +..+++|.++++|+.+||+|.++=.+|+-++-.++++ .+++.-.++.-+.-|.+-++.+-.+.+...++.
T Consensus 535 ~~-k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~-~eal~~LEeLk~~vP~es~v~~llgki~k~~~~------ 606 (638)
T KOG1126|consen 535 QL-KRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY-VEALQELEELKELVPQESSVFALLGKIYKRLGN------ 606 (638)
T ss_pred Hh-hhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch-HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc------
Confidence 88 5889999999999999999999999999999999999 678888889888999999999999999888865
Q ss_pred cchhchHHHHHHHHHHHHHhCCCC
Q 005381 197 VSKEKVLPDEYEFVHQAIFTDPDD 220 (699)
Q Consensus 197 ~~~~~~~~eeL~~~~~ai~~dP~d 220 (699)
.+.++.-+.=|..+||.-
T Consensus 607 ------~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 607 ------TDLALLHFSWALDLDPKG 624 (638)
T ss_pred ------chHHHHhhHHHhcCCCcc
Confidence 466777777788888753
No 37
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.89 E-value=1.7e-08 Score=110.96 Aligned_cols=183 Identities=14% Similarity=0.062 Sum_probs=151.1
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~ 114 (699)
+..|.. ++||.+|..++++.|++..||-..+.++..-++ .+.+..+|..+|+.||..|.+-.|-+-+
T Consensus 127 kerg~~-~~al~~y~~aiel~p~fida~inla~al~~~~~------------~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 127 KERGQL-QDALALYRAAIELKPKFIDAYINLAAALVTQGD------------LELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHhchH-HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC------------CcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 344555 899999999999999999999999999987765 6788999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhc-
Q 005381 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKV- 193 (699)
Q Consensus 115 L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~- 193 (699)
+... +++.++-++|-++++.+|...-||..-+-++...|.. ...+..+.++++.+|.--.|+.+.+.+++.+..-..
T Consensus 194 lka~-Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei-~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 194 LKAE-GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEI-WLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHhh-cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchH-HHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 9876 6999999999999999999999999999999888877 468999999999999999999999999988754100
Q ss_pred -----------------cCc----cchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHc
Q 005381 194 -----------------EGF----VSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (699)
Q Consensus 194 -----------------~~~----~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~ 232 (699)
-|+ -..++.++-+|++|++||..+|+-..|++-+.=.|.
T Consensus 272 vs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk 331 (966)
T KOG4626|consen 272 VSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK 331 (966)
T ss_pred HHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence 000 012344566777777777777777777776655553
No 38
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.88 E-value=2.9e-10 Score=130.32 Aligned_cols=191 Identities=24% Similarity=0.229 Sum_probs=109.4
Q ss_pred HHHHHhcccccccCCCCCccccchhh------hHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCccc--C
Q 005381 479 EEVLELYNDLMRLDPTHVQYYKDQHS------LVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLG--S 550 (699)
Q Consensus 479 ~~~l~~l~~L~~LDls~n~~~~~l~s------l~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~--~ 550 (699)
++.++.+.+|+.|+..+|.+..-... +..+.-..+.++.++....++..+++ |+|..|.|..+| .
T Consensus 257 p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~t-------LdL~~N~L~~lp~~~ 329 (1081)
T KOG0618|consen 257 PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRT-------LDLQSNNLPSLPDNF 329 (1081)
T ss_pred hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeee-------eeehhccccccchHH
Confidence 47888888888888888875211111 11111122223333333333333333 666666655443 1
Q ss_pred C-------------------------CCCcccCEEEccCCCCC--CCcCCccccccceeecccCCCCCCCCCcccccccc
Q 005381 551 F-------------------------DKLLWVQMLDLSHNELR--SIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKS 603 (699)
Q Consensus 551 l-------------------------~~L~~L~~LdLS~N~L~--~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~ 603 (699)
+ ..++.|+.|.|.+|.|+ .+|.+.+..+|+.|+|++|+|..+++ ..+.++..
T Consensus 330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa-s~~~kle~ 408 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA-SKLRKLEE 408 (1081)
T ss_pred HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH-HHHhchHH
Confidence 1 11234566666666662 34457777777777777777777644 55677777
Q ss_pred ccccccccccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHH
Q 005381 604 LRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSF 682 (699)
Q Consensus 604 L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~ 682 (699)
|+.|+||+|+++.+|. .+..+..++.+..-+|++.. .| .+..+ .|+.+||+.|.|.--.....
T Consensus 409 LeeL~LSGNkL~~Lp~----tva~~~~L~tL~ahsN~l~~-----------fP-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 409 LEELNLSGNKLTTLPD----TVANLGRLHTLRAHSNQLLS-----------FP-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred hHHHhcccchhhhhhH----HHHhhhhhHHHhhcCCceee-----------ch-hhhhcCcceEEecccchhhhhhhhhh
Confidence 7777777777777762 12233344444444455433 34 67788 99999999999921111111
Q ss_pred HhhcCCccccccC
Q 005381 683 LIKVLPGLKWLDG 695 (699)
Q Consensus 683 ~~~~l~~L~~LD~ 695 (699)
.-.|+|++||-
T Consensus 473 --~p~p~LkyLdl 483 (1081)
T KOG0618|consen 473 --LPSPNLKYLDL 483 (1081)
T ss_pred --CCCcccceeec
Confidence 11268998885
No 39
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.86 E-value=8.8e-08 Score=112.82 Aligned_cols=164 Identities=9% Similarity=-0.079 Sum_probs=137.6
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~ 114 (699)
...|.+ ++|+..+.+++..+|++..+|+..+.++...++ . .....+++..+++++..+|.+..+|...+++
T Consensus 223 ~~~g~~-~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~-----~---~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 293 (656)
T PRK15174 223 CAVGKY-QEAIQTGESALARGLDGAALRRSLGLAYYQSGR-----S---REAKLQAAEHWRHALQFNSDNVRIVTLYADA 293 (656)
T ss_pred HHCCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-----c---hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 345666 789999999999999999999999988888765 0 0011247999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhcc
Q 005381 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVE 194 (699)
Q Consensus 115 L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~ 194 (699)
+... +.+++++..++++++.+|.+..+|.+.+.++...|.+ ++.++.+.++++.+|.+..++.+++.++..+++
T Consensus 294 l~~~-g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~-~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~---- 367 (656)
T PRK15174 294 LIRT-GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY-TAASDEFVQLAREKGVTSKWNRYAAAALLQAGK---- 367 (656)
T ss_pred HHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC----
Confidence 9987 6999999999999999999999999999999999998 678888899999999887666666777766644
Q ss_pred CccchhchHHHHHHHHHHHHHhCCCCc
Q 005381 195 GFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (699)
Q Consensus 195 ~~~~~~~~~~eeL~~~~~ai~~dP~d~ 221 (699)
++++++.+.+++..+|++.
T Consensus 368 --------~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 368 --------TSEAESVFEHYIQARASHL 386 (656)
T ss_pred --------HHHHHHHHHHHHHhChhhc
Confidence 6888888888888888864
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=1.3e-09 Score=106.17 Aligned_cols=81 Identities=35% Similarity=0.490 Sum_probs=46.7
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcC-C-ccccccceeecccCCCCCCCCCccccccccccccccccccCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEG-L-EALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIG 615 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~-l-~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~ 615 (699)
|+|++|.|+.+..+..++.|+.|++++|.|+.++. + ..+++|+.|+|++|+|..+.....++.+++|+.|+|.+|+++
T Consensus 47 L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 47 LDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 99999999999999999999999999999999965 5 469999999999999999888888999999999999999998
Q ss_pred CCC
Q 005381 616 AHS 618 (699)
Q Consensus 616 ~lp 618 (699)
..+
T Consensus 127 ~~~ 129 (175)
T PF14580_consen 127 EKK 129 (175)
T ss_dssp GST
T ss_pred chh
Confidence 754
No 41
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.83 E-value=2.5e-07 Score=108.97 Aligned_cols=190 Identities=12% Similarity=-0.061 Sum_probs=126.8
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCC----------CCchh-----------hhhhHHHHHH
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND----------SDPDS-----------LKSILDEELR 92 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~----------~~~~~-----------~~~~~~eEL~ 92 (699)
....|.+ ++|++.+.+++.++|++..+|..++.++...++..+ ..|+. ....+++++.
T Consensus 120 l~~~g~~-~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 120 LLKSKQY-ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred HHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 4456666 788999999999999999998888888776654110 00000 0122344444
Q ss_pred HHHHHHHhCCCChHHHH-HHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChH---HHHHHHHHHH
Q 005381 93 VVESALRQNFKSYGAWH-HRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEE---DELKYTEDMI 168 (699)
Q Consensus 93 ~~~~~L~~nPKsy~aW~-hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e---~EL~~~~~~I 168 (699)
.++.++..+|.....+. ...-++... +.+++++..++++++.+|.+..+|...+.++...|.+.+ +.++.+++++
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~-g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAV-GKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 44444444432222211 112223223 467778888888888888888888888888888887743 3677888888
Q ss_pred HhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCCC
Q 005381 169 CNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRV 237 (699)
Q Consensus 169 ~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~~ 237 (699)
+.+|.+..+|...+.++...++ +++++..+++++..+|++..+|.++..++....+.
T Consensus 278 ~l~P~~~~a~~~lg~~l~~~g~------------~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~ 334 (656)
T PRK15174 278 QFNSDNVRIVTLYADALIRTGQ------------NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY 334 (656)
T ss_pred hhCCCCHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 8888888888888888776644 68888888888888888888888877776554443
No 42
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.82 E-value=2.8e-07 Score=110.81 Aligned_cols=182 Identities=15% Similarity=0.038 Sum_probs=93.0
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCC----------C-----------------------
Q 005381 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND----------S----------------------- 78 (699)
Q Consensus 32 ~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~----------~----------------------- 78 (699)
......|.+ ++|+..+.+++..+|++..+|+.++.++...++..+ .
T Consensus 30 ~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 108 (899)
T TIGR02917 30 KSYLQKNKY-KAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQ 108 (899)
T ss_pred HHHHHcCCh-HhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHH
Confidence 334455666 688888888888888888888888877776543100 0
Q ss_pred -----------Cc-h------------hhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005381 79 -----------DP-D------------SLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQK 134 (699)
Q Consensus 79 -----------~~-~------------~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~ 134 (699)
++ . ...+.+++++..+++++..+|++..+|....+++... +.++++++.++++++
T Consensus 109 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~ 187 (899)
T TIGR02917 109 VLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAE-NRFDEARALIDEVLT 187 (899)
T ss_pred HHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHC-CCHHHHHHHHHHHHH
Confidence 00 0 0012244444455555555555555554444444433 344555555555555
Q ss_pred hCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHH
Q 005381 135 ADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAI 214 (699)
Q Consensus 135 ~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai 214 (699)
.+|.+..+|..++.+....|.+ ++.++++.++++.+|.+..+|..++.++...++ ++++...++.++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~------------~~~A~~~~~~~~ 254 (899)
T TIGR02917 188 ADPGNVDALLLKGDLLLSLGNI-ELALAAYRKAIALRPNNPAVLLALATILIEAGE------------FEEAEKHADALL 254 (899)
T ss_pred hCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHH
Confidence 5555555555555444444444 344444455555555555555444444433322 445555555555
Q ss_pred HhCCCCchhHHHHH
Q 005381 215 FTDPDDQSGWFYHL 228 (699)
Q Consensus 215 ~~dP~d~SaW~Y~~ 228 (699)
..+|++..+++++.
T Consensus 255 ~~~~~~~~~~~~~~ 268 (899)
T TIGR02917 255 KKAPNSPLAHYLKA 268 (899)
T ss_pred HhCCCCchHHHHHH
Confidence 55555444444333
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=5.2e-07 Score=97.44 Aligned_cols=175 Identities=17% Similarity=0.073 Sum_probs=146.0
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w 113 (699)
...++.| ++|+++|+.+|...|+-...+..|.-+...++. +++-++.|.++|+.||+...|...|.-
T Consensus 125 ~f~~kkY-~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd------------~~~Vied~TkALEl~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 125 FFRNKKY-DEAIKYYTQAIELCPDEPIFYSNRAACYESLGD------------WEKVIEDCTKALELNPDYVKALLRRAS 191 (606)
T ss_pred hhhcccH-HHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhh------------HHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 3467888 799999999999999999999999999999975 999999999999999999999998875
Q ss_pred HHHhCCC-------------------------------------------------------------------------
Q 005381 114 ILSKGHS------------------------------------------------------------------------- 120 (699)
Q Consensus 114 ~L~~~~~------------------------------------------------------------------------- 120 (699)
.-+.+..
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 5443210
Q ss_pred ----------------------Ch-----------------------------------------------HHHHHHHHH
Q 005381 121 ----------------------SI-----------------------------------------------DNELRLLDK 131 (699)
Q Consensus 121 ----------------------~~-----------------------------------------------~~EL~~~~k 131 (699)
.| -.+-+.+++
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence 00 022346788
Q ss_pred HHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHH
Q 005381 132 FQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVH 211 (699)
Q Consensus 132 ~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~ 211 (699)
++++||++..-+-+|+-++...... ++-+.++.++..+||.|.+.+|||+.+..-+.. |+++++-|+
T Consensus 352 ~I~l~~~~~~lyI~~a~~y~d~~~~-~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q------------~e~A~aDF~ 418 (606)
T KOG0547|consen 352 AIKLDPAFNSLYIKRAAAYADENQS-EKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ------------YEEAIADFQ 418 (606)
T ss_pred HHhcCcccchHHHHHHHHHhhhhcc-HHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH------------HHHHHHHHH
Confidence 8899999998888888777776666 778899999999999999999999999887744 899999999
Q ss_pred HHHHhCCCCchhHHHHHHHHcCc
Q 005381 212 QAIFTDPDDQSGWFYHLWLLDQT 234 (699)
Q Consensus 212 ~ai~~dP~d~SaW~Y~~~Ll~~~ 234 (699)
+++.++|++.-+..-+-+++-+.
T Consensus 419 Kai~L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 419 KAISLDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHhhcChhhhHHHHHHHHHHHHH
Confidence 99999999999888766666443
No 44
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.75 E-value=7.5e-07 Score=107.12 Aligned_cols=165 Identities=13% Similarity=0.006 Sum_probs=113.7
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 005381 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L 115 (699)
..|.+ ++|+..+++++..+|++..+|.....++...++ +++++..+++++..+|.+..+|..++.+.
T Consensus 137 ~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (899)
T TIGR02917 137 GLGQL-ELAQKSYEQALAIDPRSLYAKLGLAQLALAENR------------FDEARALIDEVLTADPGNVDALLLKGDLL 203 (899)
T ss_pred HcCCH-HHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34555 678888888888888888888777777766543 77788888888888888888888887777
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccC
Q 005381 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (699)
Q Consensus 116 ~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~ 195 (699)
... +.++++++.++++++.+|.+..+|..++.++...|.+ ++..+.++++++.+|.+..++..++.+....+.
T Consensus 204 ~~~-g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 276 (899)
T TIGR02917 204 LSL-GNIELALAAYRKAIALRPNNPAVLLALATILIEAGEF-EEAEKHADALLKKAPNSPLAHYLKALVDFQKKN----- 276 (899)
T ss_pred Hhc-CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC-----
Confidence 665 5777888888888888888888888777777777776 556677777777777776666666655443322
Q ss_pred ccchhchHHHHHHHHHHHHHhCCCCchhHHHH
Q 005381 196 FVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYH 227 (699)
Q Consensus 196 ~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~ 227 (699)
++++++.+.+++..+|++..++++.
T Consensus 277 -------~~~A~~~~~~~l~~~~~~~~~~~~~ 301 (899)
T TIGR02917 277 -------YEDARETLQDALKSAPEYLPALLLA 301 (899)
T ss_pred -------HHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3444444444444444444444333
No 45
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.74 E-value=4.8e-07 Score=109.98 Aligned_cols=174 Identities=10% Similarity=-0.060 Sum_probs=137.0
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 005381 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L 115 (699)
..|.+ ++|+..+.+++...|. ..+|...+.++...+ .+++++.+++++++.+|..+.....-.-.+
T Consensus 521 ~~Gr~-eeAi~~~rka~~~~p~-~~a~~~la~all~~G------------d~~eA~~~l~qAL~l~P~~~~l~~~La~~l 586 (987)
T PRK09782 521 QVEDY-ATALAAWQKISLHDMS-NEDLLAAANTAQAAG------------NGAARDRWLQQAEQRGLGDNALYWWLHAQR 586 (987)
T ss_pred HCCCH-HHHHHHHHHHhccCCC-cHHHHHHHHHHHHCC------------CHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 44444 4556666655444333 334444444444443 378899999999999999877665433333
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccC
Q 005381 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (699)
Q Consensus 116 ~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~ 195 (699)
... +++++++..++++++++|. ..+|...+.++.++|.+ ++.++++.++++.+|.|..++...+.++...+.
T Consensus 587 ~~~-Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~-deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~----- 658 (987)
T PRK09782 587 YIP-GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNV-PAAVSDLRAALELEPNNSNYQAALGYALWDSGD----- 658 (987)
T ss_pred HhC-CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-----
Confidence 333 6899999999999999995 89999999999999998 678899999999999999999999999888755
Q ss_pred ccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCCCC
Q 005381 196 FVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRVD 238 (699)
Q Consensus 196 ~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~~~ 238 (699)
++++++.+.+|+..+|++..+|+.+.+++....+.+
T Consensus 659 -------~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 659 -------IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred -------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 799999999999999999999999999997765543
No 46
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.71 E-value=7.5e-07 Score=111.70 Aligned_cols=190 Identities=15% Similarity=0.049 Sum_probs=149.6
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHH--HHH-
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGA--WHH- 110 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~a--W~h- 110 (699)
....|.+ ++|+..+.++|..+|++..+|...+.++...++ +++++..++++++.+|++..+ |..
T Consensus 279 ~~~~g~~-~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~------------~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 279 AVDSGQG-GKAIPELQQAVRANPKDSEALGALGQAYSQQGD------------RARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred HHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 3456777 799999999999999999999999999988865 899999999999999987643 321
Q ss_pred ----H-------HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHH
Q 005381 111 ----R-------KWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWH 179 (699)
Q Consensus 111 ----R-------~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~ 179 (699)
+ +.+..+. +.++++++.++++++++|.+..++...+.+....+.+ ++++++++++++.+|.|..+|.
T Consensus 346 l~~~~~~~~~~~g~~~~~~-g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~-~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKA-NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDY-AAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHH
Confidence 1 2222233 5899999999999999999999999999999999998 7899999999999999999998
Q ss_pred HHHHHHHHhhhhhc------------------------------cCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005381 180 NRSLLLSNLLKRKV------------------------------EGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (699)
Q Consensus 180 ~R~~ll~~l~~~~~------------------------------~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~ 229 (699)
....++........ .......+.++++++.+.+++..+|++..+++.+..
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~ 503 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 77766532100000 000012345789999999999999999988888877
Q ss_pred HHcCcCCCC
Q 005381 230 LLDQTVRVD 238 (699)
Q Consensus 230 Ll~~~~~~~ 238 (699)
++....+.+
T Consensus 504 ~~~~~G~~~ 512 (1157)
T PRK11447 504 DLRQAGQRS 512 (1157)
T ss_pred HHHHcCCHH
Confidence 776544433
No 47
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.67 E-value=8.8e-07 Score=90.55 Aligned_cols=167 Identities=11% Similarity=-0.068 Sum_probs=133.1
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCch---HHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCC
Q 005381 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELY---TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF 102 (699)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~y---taWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nP 102 (699)
.+..........|.+ ++|+..+++++..+|++. .+|...+.++...++ +++++..++.+++.+|
T Consensus 35 ~~~~~g~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~------------~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 35 ELYEEAKEALDSGDY-TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD------------YAEAIAAADRFIRLHP 101 (235)
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHHCc
Confidence 444555566678888 689999999999999876 588889988888755 8999999999999999
Q ss_pred CChH---HHHHHHHHHHhCC-------CChHHHHHHHHHHHHhCCCChhhhhHH-----------------HHHHHhcCC
Q 005381 103 KSYG---AWHHRKWILSKGH-------SSIDNELRLLDKFQKADSRNFHAWNYR-----------------RFVAASMNR 155 (699)
Q Consensus 103 Ksy~---aW~hR~w~L~~~~-------~~~~~EL~~~~k~L~~dprN~haW~yR-----------------~~vl~~l~~ 155 (699)
++.. +|+.++++..+.. +.++++++.++++++.+|.+-.+|.-. +.+....|.
T Consensus 102 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~ 181 (235)
T TIGR03302 102 NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA 181 (235)
T ss_pred CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9988 7999999887541 357889999999999999998776322 222334466
Q ss_pred ChHHHHHHHHHHHHhccCc---hHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCC
Q 005381 156 SEEDELKYTEDMICNNFSN---YSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (699)
Q Consensus 156 ~~e~EL~~~~~~I~~n~sN---~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP 218 (699)
+ ++++..+.++++..|.+ ..||..++.+...++. +++++++++......|
T Consensus 182 ~-~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~------------~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 182 Y-VAAINRFETVVENYPDTPATEEALARLVEAYLKLGL------------KDLAQDAAAVLGANYP 234 (235)
T ss_pred h-HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCC
Confidence 6 68899999999997754 4799999999888755 7888888877766555
No 48
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.65 E-value=6.1e-07 Score=83.23 Aligned_cols=126 Identities=10% Similarity=-0.043 Sum_probs=112.3
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHH
Q 005381 46 ELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNE 125 (699)
Q Consensus 46 ~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~E 125 (699)
+.+.+++..+|++..+-..++..+...++ +++++..++.++..+|.+..+|..++.++... +.++++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-~~~~~A 70 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGR------------YDEALKLFQLLAAYDPYNSRYWLGLAACCQML-KEYEEA 70 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHccc------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-HHHHHH
Confidence 35789999999999887778877776654 89999999999999999999999999999876 589999
Q ss_pred HHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHH
Q 005381 126 LRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLL 185 (699)
Q Consensus 126 L~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll 185 (699)
++.++++++.+|.+...|.+++.+....+.+ ++.+++++++++.+|.+...+-.+..+.
T Consensus 71 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~ 129 (135)
T TIGR02552 71 IDAYALAAALDPDDPRPYFHAAECLLALGEP-ESALKALDLAIEICGENPEYSELKERAE 129 (135)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 9999999999999999999999999999988 7899999999999999988776666543
No 49
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=8.3e-07 Score=88.76 Aligned_cols=126 Identities=9% Similarity=0.026 Sum_probs=113.3
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHH-HhcCCC-hHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVA-ASMNRS-EEDELK 162 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl-~~l~~~-~e~EL~ 162 (699)
...++.+..+.++++.+|++..+|...+.++... +++++++..++++++++|+|..+|...+.++ ...+.. .++..+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~-g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWR-NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 4468999999999999999999999999999877 6999999999999999999999999999875 566663 378999
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchh
Q 005381 163 YTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSG 223 (699)
Q Consensus 163 ~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~Sa 223 (699)
.++++++.+|.|..++...+......+. +++++..+.+++..+|.+.+-
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~------------~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQAD------------YAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999999999999887755 899999999999999987653
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.4e-08 Score=108.39 Aligned_cols=196 Identities=23% Similarity=0.217 Sum_probs=113.6
Q ss_pred HHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCC------------------CeEEcc
Q 005381 480 EVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSP------------------MCLQLK 541 (699)
Q Consensus 480 ~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~------------------~~L~Ls 541 (699)
+..+.|..++.||+|+|-++ .++.+..-+.+|..++.|+|+. +.|.|+
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~--------------nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~ 205 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFH--------------NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLN 205 (505)
T ss_pred hhhhhCCcceeecchhhhHH--------------hHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEec
Confidence 56677888888888887632 1333333344444444433333 446777
Q ss_pred CCCCC--ccc-CCCCCcccCEEEccCCCC-CCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCCC
Q 005381 542 NLSLS--RLG-SFDKLLWVQMLDLSHNEL-RSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGA 616 (699)
Q Consensus 542 ~n~l~--~l~-~l~~L~~L~~LdLS~N~L-~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~ 616 (699)
.++++ .+. .+..+|+|.+|+|+.|.. ..-.. ..-+..|+.|||++|++-.++.....+.++.|..|+++.+.|.+
T Consensus 206 ~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 206 SCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred cCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcch
Confidence 77777 222 456678888888888843 22111 56677788888888888777555567778888888888888877
Q ss_pred CCcccccccCC---CCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCc--cchHHHhhcCCcc
Q 005381 617 HSIDTTKYLCS---SPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNE--KFKSFLIKVLPGL 690 (699)
Q Consensus 617 lp~~~~~~l~~---l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~--~~~~~~~~~l~~L 690 (699)
+.......++. .+-+..++...|.+ ..|.....+..+ +|+.|.+..|.+..+ .-.-.+++.+++|
T Consensus 286 i~~~d~~s~~kt~~f~kL~~L~i~~N~I---------~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l 356 (505)
T KOG3207|consen 286 IAEPDVESLDKTHTFPKLEYLNISENNI---------RDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQL 356 (505)
T ss_pred hcCCCccchhhhcccccceeeecccCcc---------ccccccchhhccchhhhhhcccccccccccceeEEeeeehhhh
Confidence 75222211111 11111122222222 224434455556 777778778887221 1122345667777
Q ss_pred ccccCccC
Q 005381 691 KWLDGEQL 698 (699)
Q Consensus 691 ~~LD~~~i 698 (699)
..|++..+
T Consensus 357 ~~LN~~di 364 (505)
T KOG3207|consen 357 VKLNDVDI 364 (505)
T ss_pred hhhccccc
Confidence 77776544
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.65 E-value=1.2e-09 Score=122.23 Aligned_cols=122 Identities=32% Similarity=0.384 Sum_probs=94.2
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcCCcccc-ccceeecccCCCCCCCCCccccccccccccccccccCCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEGLEALQ-LLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGA 616 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~l~~L~-~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~ 616 (699)
|+|++|+++.+..+..|+.|++||||+|.|+.+|.++.-. .|+.|++.+|.++.+ .++.+|.+|+.|||++|-|..
T Consensus 192 LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL---~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 192 LNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL---RGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred hccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh---hhHHhhhhhhccchhHhhhhc
Confidence 8999999998888999999999999999999999843332 399999999999887 678889999999999999987
Q ss_pred CCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC-CCccchHHHhhcCC-----c
Q 005381 617 HSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI-VNEKFKSFLIKVLP-----G 689 (699)
Q Consensus 617 lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~~~~~~~~~~~l~-----~ 689 (699)
.. . ...+..| .|+.|.|.|||+ ..+..+..+.+.+. .
T Consensus 269 hs--e----------------------------------L~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~ 312 (1096)
T KOG1859|consen 269 HS--E----------------------------------LEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPV 312 (1096)
T ss_pred ch--h----------------------------------hhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCc
Confidence 63 0 0123334 789999999999 55566666655443 2
Q ss_pred cccccCccC
Q 005381 690 LKWLDGEQL 698 (699)
Q Consensus 690 L~~LD~~~i 698 (699)
==.|||..|
T Consensus 313 ~f~LDgk~l 321 (1096)
T KOG1859|consen 313 KFKLDGKAL 321 (1096)
T ss_pred ceEecceec
Confidence 124777655
No 52
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.64 E-value=5.4e-09 Score=110.22 Aligned_cols=88 Identities=22% Similarity=0.190 Sum_probs=60.4
Q ss_pred CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchh
Q 005381 573 LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSY 652 (699)
Q Consensus 573 l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~ 652 (699)
|..|++|+.|+|++|+|+.+. ...|.++..++.|.|..|+|..+.-..+..+.. +..+.+.+|.++++.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~-~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~---L~tL~L~~N~it~~~------- 338 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIE-DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSG---LKTLSLYDNQITTVA------- 338 (498)
T ss_pred HhhcccceEeccCCCccchhh-hhhhcchhhhhhhhcCcchHHHHHHHhhhcccc---ceeeeecCCeeEEEe-------
Confidence 677777788888888877774 366777777777778888777765433433333 233455677776643
Q ss_pred hhhhccCCCC-CccEEEecCCCC
Q 005381 653 WEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 653 ~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
|.+|..+ .|..|+|-+|++
T Consensus 339 ---~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 339 ---PGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ---cccccccceeeeeehccCcc
Confidence 5677777 888888888888
No 53
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=9e-07 Score=88.52 Aligned_cols=121 Identities=12% Similarity=0.072 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HhCCC
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL-SKGHS 120 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L-~~~~~ 120 (699)
++++..+.++|..+|++..+|...+.++...++ +++++..++++++.+|++..+|...+-++ ... +
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~------------~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~-g 122 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRND------------YDNALLAYRQALQLRGENAELYAALATVLYYQA-G 122 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-C
Confidence 789999999999999999999999999988865 89999999999999999999999999876 443 3
Q ss_pred C--hHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchH
Q 005381 121 S--IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYS 176 (699)
Q Consensus 121 ~--~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~S 176 (699)
. .+++.+.++++++.||.|..++...+......|.+ ++.+++++++++.+|.+.+
T Consensus 123 ~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~-~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 123 QHMTPQTREMIDKALALDANEVTALMLLASDAFMQADY-AQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred CCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCcc
Confidence 4 58999999999999999999999999999999999 7899999999999888764
No 54
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.62 E-value=4.3e-08 Score=115.31 Aligned_cols=111 Identities=23% Similarity=0.126 Sum_probs=64.6
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAH 617 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~l 617 (699)
|+|++|.|+.+|.+ ..+|+.|++++|+|+.+|.+ ..+|+.|++++|+|+.++ .. ..+|+.|++++|+|+.+
T Consensus 347 LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP--~l---~s~L~~LdLS~N~LssI 417 (788)
T PRK15387 347 LSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP--VL---PSELKELMVSGNRLTSL 417 (788)
T ss_pred EecCCCccCCCCCC--CcccceehhhccccccCccc--ccccceEEecCCcccCCC--Cc---ccCCCEEEccCCcCCCC
Confidence 66666666655532 23555566666666555542 134666666666666552 11 23566666777766666
Q ss_pred CcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCC
Q 005381 618 SIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIV 675 (699)
Q Consensus 618 p~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~ 675 (699)
|. .+. . +..+++++|.+ ..+|..+..+ +|+.|+|++|+|.
T Consensus 418 P~-l~~-----~-L~~L~Ls~NqL-----------t~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 418 PM-LPS-----G-LLSLSVYRNQL-----------TRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred Cc-chh-----h-hhhhhhccCcc-----------cccChHHhhccCCCeEECCCCCCC
Confidence 52 111 1 11234444444 3457788889 9999999999993
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.62 E-value=1.7e-08 Score=98.11 Aligned_cols=127 Identities=23% Similarity=0.349 Sum_probs=104.0
Q ss_pred CeEEccCCCCCcccCCCCC-cccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccC
Q 005381 536 MCLQLKNLSLSRLGSFDKL-LWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEI 614 (699)
Q Consensus 536 ~~L~Ls~n~l~~l~~l~~L-~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I 614 (699)
++++|.+..+..+..++.. .+...+||++|.|..++.|..+++|.+|.|++|+|+.+. |.--..+++|..|.|.+|+|
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeec-cchhhhccccceEEecCcch
Confidence 4588899988877654443 578889999999999999999999999999999999984 34445578899999999999
Q ss_pred CCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC-CCccchHHHhhcCCcccc
Q 005381 615 GAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI-VNEKFKSFLIKVLPGLKW 692 (699)
Q Consensus 615 ~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~~~~~~~~~~~l~~L~~ 692 (699)
..+. . ..-+..+ +|+.|.+-+|++ .-..|+..++-.+|+|+.
T Consensus 101 ~~l~--d----------------------------------l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~ 144 (233)
T KOG1644|consen 101 QELG--D----------------------------------LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRT 144 (233)
T ss_pred hhhh--h----------------------------------cchhccCCccceeeecCCchhcccCceeEEEEecCcceE
Confidence 8873 1 1134556 899999999999 667888889999999999
Q ss_pred ccCccCC
Q 005381 693 LDGEQLH 699 (699)
Q Consensus 693 LD~~~i~ 699 (699)
||...|+
T Consensus 145 LDF~kVt 151 (233)
T KOG1644|consen 145 LDFQKVT 151 (233)
T ss_pred eehhhhh
Confidence 9988764
No 56
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.61 E-value=7.4e-07 Score=82.68 Aligned_cols=128 Identities=10% Similarity=0.001 Sum_probs=114.6
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 005381 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (699)
Q Consensus 92 ~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n 171 (699)
+.+++++..+|++..+-..++..+... +.++++++.+++++..+|.+..+|...+.+....+.+ .+.++++.++++.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQ-GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEY-EEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC
Confidence 357889999999999888888888766 6899999999999999999999999999999999988 67888899999999
Q ss_pred cCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 172 FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 172 ~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
|.+...|++++.+....++ +++++..+..++..+|++...+.+.+.+...
T Consensus 82 p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGE------------PESALKALDLAIEICGENPEYSELKERAEAM 131 (135)
T ss_pred CCChHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 9999999999998887744 7999999999999999999999888776543
No 57
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=4.6e-07 Score=93.15 Aligned_cols=105 Identities=17% Similarity=0.128 Sum_probs=51.1
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~ 114 (699)
+..+.| ++|++.|+++|+++|.+...+-.|.-++.+|+. |+.+++-|+.+|.+||.+..+|..-+.+
T Consensus 92 m~~~~Y-~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~------------~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 92 MKNKDY-QEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE------------YEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHhhhH-HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc------------hHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 334444 455555555555555555554455555554433 4455555555555555555555444444
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhc
Q 005381 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM 153 (699)
Q Consensus 115 L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l 153 (699)
..-+ +.++++++.|.|+|++||.|-..|.+-.|+=..+
T Consensus 159 ~~~~-gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 159 YLAL-GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHcc-CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 4433 3445555555555555555554444444444443
No 58
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=98.57 E-value=6.9e-08 Score=66.30 Aligned_cols=27 Identities=41% Similarity=0.895 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005381 90 ELRVVESALRQNFKSYGAWHHRKWILS 116 (699)
Q Consensus 90 EL~~~~~~L~~nPKsy~aW~hR~w~L~ 116 (699)
||+++..+|..+||||++|+||+|+++
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHH
Confidence 344444444444444444444444443
No 59
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.56 E-value=5.5e-06 Score=103.97 Aligned_cols=70 Identities=11% Similarity=-0.025 Sum_probs=57.9
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w 113 (699)
....|++ ++|++.+++++.++|++..++.....++...++ +++++..+++++..+|.+..+++-+..
T Consensus 471 ~~~~g~~-~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~------------~~~A~~~l~~al~~~P~~~~~~~a~al 537 (1157)
T PRK11447 471 LENQGKW-AQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ------------RSQADALMRRLAQQKPNDPEQVYAYGL 537 (1157)
T ss_pred HHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3456666 899999999999999999999999998888765 888899999999888988888766554
Q ss_pred HHH
Q 005381 114 ILS 116 (699)
Q Consensus 114 ~L~ 116 (699)
.+.
T Consensus 538 ~l~ 540 (1157)
T PRK11447 538 YLS 540 (1157)
T ss_pred HHH
Confidence 443
No 60
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=2.6e-06 Score=94.09 Aligned_cols=180 Identities=16% Similarity=0.180 Sum_probs=143.6
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHH--
Q 005381 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH-- 110 (699)
Q Consensus 33 ~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~h-- 110 (699)
..+++|..+ +|.-+++.+++.+|+|..||-+-|.+-..... =..++..+.+|++.+|+|-.|-.-
T Consensus 294 ~lm~nG~L~-~A~LafEAAVkqdP~haeAW~~LG~~qaENE~------------E~~ai~AL~rcl~LdP~NleaLmaLA 360 (579)
T KOG1125|consen 294 NLMKNGDLS-EAALAFEAAVKQDPQHAEAWQKLGITQAENEN------------EQNAISALRRCLELDPTNLEALMALA 360 (579)
T ss_pred HHHhcCCch-HHHHHHHHHHhhChHHHHHHHHhhhHhhhccc------------hHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 345677764 66777999999999999999999988776643 245677777888888887766532
Q ss_pred ----------------HHHHHHhCC-------------------------------------------------------
Q 005381 111 ----------------RKWILSKGH------------------------------------------------------- 119 (699)
Q Consensus 111 ----------------R~w~L~~~~------------------------------------------------------- 119 (699)
+.|+.....
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 345444210
Q ss_pred ---CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCc
Q 005381 120 ---SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF 196 (699)
Q Consensus 120 ---~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~ 196 (699)
+.|++++.|++.+|..+|.||.-|+--|-.+..-.+. +++++.|.++++.-|.-.-+|++.+.-..+++-
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s-~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~------ 513 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRS-EEAISAYNRALQLQPGYVRVRYNLGISCMNLGA------ 513 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCccc-HHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh------
Confidence 1367999999999999999999999999999988888 789999999999999999999999988888754
Q ss_pred cchhchHHHHHHHHHHHHHhCCC----C------chhHHHHHHHHcCcCCCC
Q 005381 197 VSKEKVLPDEYEFVHQAIFTDPD----D------QSGWFYHLWLLDQTVRVD 238 (699)
Q Consensus 197 ~~~~~~~~eeL~~~~~ai~~dP~----d------~SaW~Y~~~Ll~~~~~~~ 238 (699)
|+|+++.+..||...+. . ..+|-++|-.|-...+.+
T Consensus 514 ------ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 514 ------YKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred ------HHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 99999999999988876 2 359999997776655433
No 61
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.53 E-value=4.5e-06 Score=91.68 Aligned_cols=176 Identities=11% Similarity=-0.010 Sum_probs=135.2
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC----hHHHH
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS----YGAWH 109 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs----y~aW~ 109 (699)
....|.+ ++|+..+.+++..+|++..+|...+.++...+. +++++..++.++...+.. ..+|.
T Consensus 45 ~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 45 FLLNEQP-DKAIDLFIEMLKVDPETVELHLALGNLFRRRGE------------VDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred HHhcCCh-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCc------------HHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3566777 579999999999999999999999988877754 889999999888753332 24566
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHH-----HHHHHHH
Q 005381 110 HRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSA-----WHNRSLL 184 (699)
Q Consensus 110 hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SA-----W~~R~~l 184 (699)
..+.++... +.+++++.+++++++.+|.+..++...+.+....+.+ +++++.+.++++.+|.+... |...+.+
T Consensus 112 ~La~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 112 ELGQDYLKA-GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDW-QKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHC-CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchH-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 667776655 6899999999999999999999999888888888887 67888889999888776431 1122222
Q ss_pred HHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCC
Q 005381 185 LSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (699)
Q Consensus 185 l~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~ 236 (699)
+... +.+++++..+.+++..+|++..+|.++..++....+
T Consensus 190 ~~~~------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 190 ALAR------------GDLDAARALLKKALAADPQCVRASILLGDLALAQGD 229 (389)
T ss_pred HHhC------------CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC
Confidence 2222 347899999999999999998888887766655443
No 62
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.53 E-value=2.9e-06 Score=99.55 Aligned_cols=131 Identities=6% Similarity=-0.070 Sum_probs=115.7
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 005381 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L 115 (699)
+.|-+ +||+.+++.++.+.|++..|+..+..+|.+.++ +++++..++++|..+|+++.+-++++-++
T Consensus 98 ~~g~~-~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~------------~eeA~~~~~~~l~~~p~~~~~~~~~a~~l 164 (694)
T PRK15179 98 AAHRS-DEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG------------IEAGRAEIELYFSGGSSSAREILLEAKSW 164 (694)
T ss_pred HcCCc-HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc------------HHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 34444 899999999999999999999999999999876 89999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHH
Q 005381 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNR 181 (699)
Q Consensus 116 ~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R 181 (699)
.++ +.+++++++|++++..+|.+..+|.-++.++...|.. +++...+.++|+..-.-.-++..+
T Consensus 165 ~~~-g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~-~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 165 DEI-GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGAL-WRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHh-cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhCcchHHHHHH
Confidence 988 6999999999999999999999999999999999998 677777799998765554554433
No 63
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.52 E-value=5.8e-06 Score=97.08 Aligned_cols=157 Identities=11% Similarity=-0.032 Sum_probs=138.9
Q ss_pred cHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 005381 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHS 120 (699)
Q Consensus 41 ~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~ 120 (699)
.+++|.-......--|+...+-..=..+..++++ ++++...++.++...|++..|+.++.-+|.+. .
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~------------~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~-~ 134 (694)
T PRK15179 68 PAAALPELLDYVRRYPHTELFQVLVARALEAAHR------------SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ-Q 134 (694)
T ss_pred hHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-c
Confidence 3555555555566788888888888888888876 89999999999999999999999999999988 5
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchh
Q 005381 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKE 200 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~ 200 (699)
.+++++..+++++..+|.|..+-..++-++..+|.+ +++++.|++++..+|.+..+|..++.++...|+
T Consensus 135 ~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~-~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---------- 203 (694)
T PRK15179 135 GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQS-EQADACFERLSRQHPEFENGYVGWAQSLTRRGA---------- 203 (694)
T ss_pred cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcch-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC----------
Confidence 999999999999999999999999999999999999 789999999999999999999999999998876
Q ss_pred chHHHHHHHHHHHHHhCCCCchh
Q 005381 201 KVLPDEYEFVHQAIFTDPDDQSG 223 (699)
Q Consensus 201 ~~~~eeL~~~~~ai~~dP~d~Sa 223 (699)
.+++...|.+|+...-.-.-.
T Consensus 204 --~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 204 --LWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred --HHHHHHHHHHHHHhhCcchHH
Confidence 688888998888776554433
No 64
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.52 E-value=8.3e-08 Score=113.31 Aligned_cols=73 Identities=22% Similarity=0.301 Sum_probs=41.7
Q ss_pred EEccCCCCCccc-CCCCCcccCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCC
Q 005381 538 LQLKNLSLSRLG-SFDKLLWVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIG 615 (699)
Q Consensus 538 L~Ls~n~l~~l~-~l~~L~~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~ 615 (699)
|++++|.|+.+| .+ ..+|+.|++++|+|+.+|. +. ++|+.|++++|.++.++ ..+ .++|+.|++++|.++
T Consensus 267 L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP--~~l--~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 267 LDLFHNKISCLPENL--PEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALP--ETL--PPGLKTLEAGENALT 338 (754)
T ss_pred EECcCCccCcccccc--CCCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCC--ccc--cccceeccccCCccc
Confidence 666666666655 22 2466677777777666665 32 35666677777766552 211 135555555555555
Q ss_pred CCC
Q 005381 616 AHS 618 (699)
Q Consensus 616 ~lp 618 (699)
.+|
T Consensus 339 ~LP 341 (754)
T PRK15370 339 SLP 341 (754)
T ss_pred cCC
Confidence 554
No 65
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.51 E-value=5.5e-09 Score=114.51 Aligned_cols=139 Identities=27% Similarity=0.231 Sum_probs=87.2
Q ss_pred EEccCCCCCccc-CCCCCcccCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCC
Q 005381 538 LQLKNLSLSRLG-SFDKLLWVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIG 615 (699)
Q Consensus 538 L~Ls~n~l~~l~-~l~~L~~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~ 615 (699)
+.|.+|.+..++ .+..+..|+.|||+.|+++.+|. ++.|+ |+.|-+++|+++.+ |+.++.+..|..|+.+.|.|.
T Consensus 103 liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~l--p~~ig~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 103 LILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSL--PEEIGLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred HHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccC--CcccccchhHHHhhhhhhhhh
Confidence 556667777666 67777777777888888777777 65555 77777778877776 456666777777777877777
Q ss_pred CCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCCCccEEEecCCCC-CCccchHHHhhcCCcccc--
Q 005381 616 AHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGLNLTQFDIVGNAI-VNEKFKSFLIKVLPGLKW-- 692 (699)
Q Consensus 616 ~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L~L~~LdLs~N~l-~~~~~~~~~~~~l~~L~~-- 692 (699)
.+|. .++.+.-+..+... -+.+...|..+..|.|..||+|.|+| .+|. -+..|..|++
T Consensus 180 slps----ql~~l~slr~l~vr-----------Rn~l~~lp~El~~LpLi~lDfScNkis~iPv----~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 180 SLPS----QLGYLTSLRDLNVR-----------RNHLEDLPEELCSLPLIRLDFSCNKISYLPV----DFRKMRHLQVLQ 240 (722)
T ss_pred hchH----HhhhHHHHHHHHHh-----------hhhhhhCCHHHhCCceeeeecccCceeecch----hhhhhhhheeee
Confidence 7752 11111111111112 22334456677766999999999999 2221 2234555553
Q ss_pred ccCccC
Q 005381 693 LDGEQL 698 (699)
Q Consensus 693 LD~~~i 698 (699)
||.+|+
T Consensus 241 LenNPL 246 (722)
T KOG0532|consen 241 LENNPL 246 (722)
T ss_pred eccCCC
Confidence 565554
No 66
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=98.50 E-value=1.3e-07 Score=64.88 Aligned_cols=31 Identities=39% Similarity=0.819 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCChhhhhHHHHHHHhcC
Q 005381 124 NELRLLDKFQKADSRNFHAWNYRRFVAASMN 154 (699)
Q Consensus 124 ~EL~~~~k~L~~dprN~haW~yR~~vl~~l~ 154 (699)
+||+++.+++..||+||+||+||+|++++++
T Consensus 1 ~El~~~~~~l~~~pknys~W~yR~~ll~~l~ 31 (31)
T PF01239_consen 1 DELEFTKKALEKDPKNYSAWNYRRWLLKQLN 31 (31)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHCcccccHHHHHHHHHHHcc
Confidence 5999999999999999999999999998864
No 67
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=4.5e-06 Score=89.89 Aligned_cols=136 Identities=18% Similarity=0.145 Sum_probs=123.0
Q ss_pred cHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 005381 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHS 120 (699)
Q Consensus 41 ~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~ 120 (699)
.+.|+.++..+|++||....||---|.=...+.. -..++..+..|+.+||++|.||+.-|....-+ .
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN------------t~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim-~ 412 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN------------THAAIESYRRAVDINPRDYRAWYGLGQAYEIM-K 412 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc------------cHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh-c
Confidence 3899999999999999999999999877666643 57899999999999999999999999998866 3
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhh
Q 005381 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~ 190 (699)
-..-+|-++.++++..|.+-..|.--|-+..++++. +++++++.++|...=-|-+|..+.+.+...+..
T Consensus 413 Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~-~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 413 MHFYALYYFQKALELKPNDSRLWVALGECYEKLNRL-EEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH-HHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999999998 789999999999887799999999999888854
No 68
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.9e-05 Score=85.25 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=122.3
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHH
Q 005381 82 SLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDEL 161 (699)
Q Consensus 82 ~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL 161 (699)
...+.-+.++.++.++|+.||+...||.--|.=.-.+ ..-..++++|.+|++++|++|.||+--|.....++-+ .=.|
T Consensus 341 Slr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEm-KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh-~YaL 418 (559)
T KOG1155|consen 341 SLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEM-KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH-FYAL 418 (559)
T ss_pred HHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHh-cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch-HHHH
Confidence 3456679999999999999999999998776655555 3567899999999999999999999999998888766 5688
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcC
Q 005381 162 KYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTV 235 (699)
Q Consensus 162 ~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~ 235 (699)
=|+.++++.-|.|.-.|.-.|....++.+ .++|+.|++.|+...--+.++..++.-|.....
T Consensus 419 yYfqkA~~~kPnDsRlw~aLG~CY~kl~~------------~~eAiKCykrai~~~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 419 YYFQKALELKPNDSRLWVALGECYEKLNR------------LEEAIKCYKRAILLGDTEGSALVRLAKLYEELK 480 (559)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhcc------------HHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 89999999999999999999999988855 799999999999987778899998888887644
No 69
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.48 E-value=2.1e-07 Score=109.91 Aligned_cols=74 Identities=22% Similarity=0.297 Sum_probs=52.9
Q ss_pred EEccCCCCCccc-CCCCCcccCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCC
Q 005381 538 LQLKNLSLSRLG-SFDKLLWVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIG 615 (699)
Q Consensus 538 L~Ls~n~l~~l~-~l~~L~~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~ 615 (699)
|+|++|.++.+| .+ ..+|+.|+|++|+|+.+|. +. .+|+.|++++|+|+.+ |..+. ++|+.|++++|.++
T Consensus 246 L~Ls~N~L~~LP~~l--~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~L--P~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 246 MELSINRITELPERL--PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTL--PAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred EECcCCccCcCChhH--hCCCCEEECcCCccCccccccC--CCCcEEECCCCccccC--cccch--hhHHHHHhcCCccc
Confidence 777888877766 22 2468888888888887776 43 4788888888888776 23332 46888888888888
Q ss_pred CCCc
Q 005381 616 AHSI 619 (699)
Q Consensus 616 ~lp~ 619 (699)
.+|.
T Consensus 318 ~LP~ 321 (754)
T PRK15370 318 ALPE 321 (754)
T ss_pred cCCc
Confidence 7763
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.47 E-value=2.4e-05 Score=77.77 Aligned_cols=156 Identities=10% Similarity=-0.013 Sum_probs=127.8
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhC--CCChHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN--FKSYGAWHHRK 112 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~n--PKsy~aW~hR~ 112 (699)
...|++ ++|++.+.+++..+|++..+|...+.++...+. +++++..+++++... |....+|...+
T Consensus 76 ~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 142 (234)
T TIGR02521 76 QQLGEL-EKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK------------YEQAMQQFEQAIEDPLYPQPARSLENAG 142 (234)
T ss_pred HHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc------------HHHHHHHHHHHHhccccccchHHHHHHH
Confidence 345666 799999999999999999999999998887754 899999999999753 66778888888
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhh
Q 005381 113 WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (699)
Q Consensus 113 w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~ 192 (699)
.++... +.++++...++++++.+|.+..+|...+.+....+.+ ++.++++.++++..|.+...|.....+....+.
T Consensus 143 ~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 218 (234)
T TIGR02521 143 LCALKA-GDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY-KDARAYLERYQQTYNQTAESLWLGIRIARALGD-- 218 (234)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh--
Confidence 888776 6899999999999999999999999999999999988 678889999999988888888766666555433
Q ss_pred ccCccchhchHHHHHHHHHHHHHhC
Q 005381 193 VEGFVSKEKVLPDEYEFVHQAIFTD 217 (699)
Q Consensus 193 ~~~~~~~~~~~~eeL~~~~~ai~~d 217 (699)
.+++..+...+....
T Consensus 219 ----------~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 219 ----------VAAAQRYGAQLQKLF 233 (234)
T ss_pred ----------HHHHHHHHHHHHhhC
Confidence 455666655554443
No 71
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.47 E-value=6.5e-08 Score=77.47 Aligned_cols=59 Identities=37% Similarity=0.472 Sum_probs=45.7
Q ss_pred cccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccC
Q 005381 555 LWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEI 614 (699)
Q Consensus 555 ~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I 614 (699)
++|+.|++++|+|+.+|. |.++++|+.|++++|.|+.++ +..|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCcC
Confidence 467788888888887776 788888888888888887763 46678888888888888865
No 72
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=8.7e-07 Score=91.18 Aligned_cols=102 Identities=12% Similarity=0.054 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
+.|++++..|..||..+|++...+-.|.-++.++ +.++.+++-|+++|.+||+...||.--|.+.-.+|++ ++++++|
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L-g~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~-~~A~~ay 172 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKL-GEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY-EEAIEAY 172 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh-cchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH-HHHHHHH
Confidence 6799999999999999999999999999999998 5999999999999999999999999999999999999 7788889
Q ss_pred HHHHHhccCchHHHHHHHHHHHHh
Q 005381 165 EDMICNNFSNYSAWHNRSLLLSNL 188 (699)
Q Consensus 165 ~~~I~~n~sN~SAW~~R~~ll~~l 188 (699)
.++++++|.|.+.|.+..++=..+
T Consensus 173 kKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 173 KKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HhhhccCCCcHHHHHHHHHHHHHh
Confidence 999999999999999988775555
No 73
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.46 E-value=4.5e-07 Score=106.81 Aligned_cols=33 Identities=27% Similarity=0.201 Sum_probs=18.3
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEG 572 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~ 572 (699)
|++++|.++.+|. .+++|+.|+|++|+|+.+|.
T Consensus 287 L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~ 319 (788)
T PRK15387 287 LWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPA 319 (788)
T ss_pred EECcCCccccccc--cccccceeECCCCccccCCC
Confidence 5566666665543 23456666666666655543
No 74
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.45 E-value=2.1e-05 Score=86.33 Aligned_cols=126 Identities=14% Similarity=0.007 Sum_probs=77.4
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChH-----HHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG-----AWH 109 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~-----aW~ 109 (699)
...|.+ ++|+..+.+++..+|....+++....++...++ ++++++.++.++..+|.+.. .|.
T Consensus 118 ~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 184 (389)
T PRK11788 118 LKAGLL-DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD------------WQKAIDVAERLEKLGGDSLRVEIAHFYC 184 (389)
T ss_pred HHCCCH-HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch------------HHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 345555 688888888888888888888777776665543 56666666666666655432 122
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCch
Q 005381 110 HRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (699)
Q Consensus 110 hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~ 175 (699)
..+.++.+. +.+++++..++++++.+|.+..+|...+.+....|.+ +++++++.++++.+|.+.
T Consensus 185 ~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 185 ELAQQALAR-GDLDAARALLKKALAADPQCVRASILLGDLALAQGDY-AAAIEALERVEEQDPEYL 248 (389)
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHChhhH
Confidence 222222222 3566666666666666666666666666666666655 456666666666666553
No 75
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.45 E-value=2.9e-06 Score=92.66 Aligned_cols=106 Identities=12% Similarity=0.015 Sum_probs=70.5
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 005381 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (699)
Q Consensus 31 ~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~h 110 (699)
.......+.| ++|++++.++|..+|++..+|..|+.++..+++ +++++..+++++..+|++..+|+.
T Consensus 9 a~~a~~~~~~-~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~------------~~eAl~~~~~Al~l~P~~~~a~~~ 75 (356)
T PLN03088 9 AKEAFVDDDF-ALAVDLYTQAIDLDPNNAELYADRAQANIKLGN------------FTEAVADANKAIELDPSLAKAYLR 75 (356)
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCcCCHHHHHH
Confidence 3344455666 577777777777777777777777777666654 677777777777777777777777
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHH
Q 005381 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVA 150 (699)
Q Consensus 111 R~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl 150 (699)
++.++..+ +.+++++..++++++++|.|..+....+.+.
T Consensus 76 lg~~~~~l-g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 76 KGTACMKL-EEYQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHh-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 77666655 4677777777777777777666554444333
No 76
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=5e-06 Score=90.04 Aligned_cols=166 Identities=13% Similarity=0.070 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~ 121 (699)
-++-..++++|..+|.+...+-+|..++..... -++-...++.+..+||.+..++|||+.+..-+ ..
T Consensus 343 ~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~------------~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL-~q 409 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQ------------SEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL-QQ 409 (606)
T ss_pred hhhhhhHHHHHhcCcccchHHHHHHHHHhhhhc------------cHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH-HH
Confidence 466667777777777777776666655544421 23445677777777777777777777666544 46
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCCh---------------------------------HHHHHHHHHHH
Q 005381 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSE---------------------------------EDELKYTEDMI 168 (699)
Q Consensus 122 ~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~---------------------------------e~EL~~~~~~I 168 (699)
++++++-+++++.+||.|..+.-..++++-+.+... ..+++.++++|
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 777777777777777777777777766665544320 24556666666
Q ss_pred HhccC------chHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005381 169 CNNFS------NYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 169 ~~n~s------N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll 231 (699)
+..|. |.-...+++.++.+. + +.+.++++++.+||++||.-+-|.-=..-+.
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qw----------k-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~ 547 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQW----------K-EDINQAENLLRKAIELDPKCEQAYETLAQFE 547 (606)
T ss_pred hhccccccccccchhhhhhhHhhhch----------h-hhHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 66666 555555665555442 1 3468999999999999999888876554444
No 77
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.39 E-value=4.4e-06 Score=87.92 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHH
Q 005381 85 SILDEELRVVESALRQN--FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELK 162 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~n--PKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~ 162 (699)
..+++...+++.+.... |.+...|.+++.+..+. +..++++++++++++.+|.|..++..-.|++-..|.. .+..+
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~-G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~-~~~~~ 201 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL-GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY-DEARE 201 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH-HHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh-HHHHH
Confidence 44677777777766544 78999999999999987 6899999999999999999999999999998877775 34566
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCCCCCCcc
Q 005381 163 YTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRVDSPQL 242 (699)
Q Consensus 163 ~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~~~~~~~ 242 (699)
.+..+.+..|.|...|...+.+...++. +++++..+.+++..+|+|......+..++.+..+.+.+..
T Consensus 202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~------------~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWDALAAAYLQLGR------------YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHHHH-HTSCCHCHHHHHHHHHHT-------------HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhccccc------------cccccccccccccccccccccccccccccccccccccccc
Confidence 6677777779999999999999988865 7999999999999999999999999999988776665543
No 78
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.32 E-value=4e-05 Score=92.22 Aligned_cols=133 Identities=6% Similarity=-0.119 Sum_probs=115.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSY---------------GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFV 149 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy---------------~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~v 149 (699)
..+++++..++.+...+|+.. .+...+..++... +.++++++.+++++..+|.|..+|..++.+
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~-g~~~eA~~~l~~al~~~P~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS-NDLPQAEMRARELAYNAPGNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 458899999999999988532 3455566666655 689999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005381 150 AASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (699)
Q Consensus 150 l~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~ 229 (699)
....+.+ ++.++.++++++.+|.|..++..++.+...+++ ++++...+++++..+|+|..+-.+.|-
T Consensus 403 ~~~~g~~-~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~------------~~~A~~~~~~ll~~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 403 LQARGWP-RAAENELKKAEVLEPRNINLEVEQAWTALDLQE------------WRQMDVLTDDVVAREPQDPGVQRLARA 469 (765)
T ss_pred HHhcCCH-HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999998 789999999999999999999999987776643 899999999999999999999888776
Q ss_pred HH
Q 005381 230 LL 231 (699)
Q Consensus 230 Ll 231 (699)
+-
T Consensus 470 ~~ 471 (765)
T PRK10049 470 RD 471 (765)
T ss_pred HH
Confidence 54
No 79
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.31 E-value=2.9e-05 Score=79.29 Aligned_cols=170 Identities=11% Similarity=0.014 Sum_probs=126.4
Q ss_pred CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 55 NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY---GAWHHRKWILSKGHSSIDNELRLLDK 131 (699)
Q Consensus 55 nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy---~aW~hR~w~L~~~~~~~~~EL~~~~k 131 (699)
++....++..++..+...+. +++++..++.++..+|.++ .+|.+.+-++.+. +.++++++.+++
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~------------~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~ 95 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGD------------YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADR 95 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHH
Confidence 34456677777777766654 8999999999999999986 5889999888877 699999999999
Q ss_pred HHHhCCCChh---hhhHHHHHHHhc--------CCChHHHHHHHHHHHHhccCchHHHHHHHHH---HHHhhhh--hccC
Q 005381 132 FQKADSRNFH---AWNYRRFVAASM--------NRSEEDELKYTEDMICNNFSNYSAWHNRSLL---LSNLLKR--KVEG 195 (699)
Q Consensus 132 ~L~~dprN~h---aW~yR~~vl~~l--------~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~l---l~~l~~~--~~~~ 195 (699)
+++.+|++.. +|..++.+.... +.+ ++.++.++++++.+|.+..+|.-...+ ...+... .-+.
T Consensus 96 ~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~ 174 (235)
T TIGR03302 96 FIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAA-REAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVAR 174 (235)
T ss_pred HHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHH-HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 799999887654 333 678999999999999998776333221 1111000 0000
Q ss_pred ccchhchHHHHHHHHHHHHHhCCCC---chhHHHHHHHHcCcCCCC
Q 005381 196 FVSKEKVLPDEYEFVHQAIFTDPDD---QSGWFYHLWLLDQTVRVD 238 (699)
Q Consensus 196 ~~~~~~~~~eeL~~~~~ai~~dP~d---~SaW~Y~~~Ll~~~~~~~ 238 (699)
.....+.+++++..+..++...|++ ..+|+.+..++....+.+
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~ 220 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKD 220 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHH
Confidence 1122345799999999999998775 479999988887765543
No 80
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.29 E-value=9.6e-06 Score=85.38 Aligned_cols=152 Identities=21% Similarity=0.183 Sum_probs=113.3
Q ss_pred cCCCCcHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 005381 36 HNHIYSKEAVELSTKLLETN--PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~n--P~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w 113 (699)
..+.+ +++.++.+.+.... |++..+|..++.+....+. .++++++++++|+.+|++..++..-.|
T Consensus 122 ~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~------------~~~A~~~~~~al~~~P~~~~~~~~l~~ 188 (280)
T PF13429_consen 122 RLGDY-DEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD------------PDKALRDYRKALELDPDDPDARNALAW 188 (280)
T ss_dssp HTT-H-HHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH------------HHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHhHH-HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34444 68888888877655 7889999999999998875 899999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhc
Q 005381 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKV 193 (699)
Q Consensus 114 ~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~ 193 (699)
++-.. +..++..+.+....+..|.|...|..-+++...+|.+ ++++.++.++++.+|.|.....+-+.++...|+
T Consensus 189 ~li~~-~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~-~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~--- 263 (280)
T PF13429_consen 189 LLIDM-GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY-EEALEYLEKALKLNPDDPLWLLAYADALEQAGR--- 263 (280)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H-HHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------
T ss_pred HHHHC-CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc-ccccccccccccccccccccccccccccccccc---
Confidence 99766 5778888889888888899999999999999999998 789999999999999999999999999888866
Q ss_pred cCccchhchHHHHHHHHHHHH
Q 005381 194 EGFVSKEKVLPDEYEFVHQAI 214 (699)
Q Consensus 194 ~~~~~~~~~~~eeL~~~~~ai 214 (699)
.+++++...+++
T Consensus 264 ---------~~~A~~~~~~~~ 275 (280)
T PF13429_consen 264 ---------KDEALRLRRQAL 275 (280)
T ss_dssp ---------------------
T ss_pred ---------cccccccccccc
Confidence 455665555544
No 81
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.28 E-value=2.5e-07 Score=98.70 Aligned_cols=151 Identities=22% Similarity=0.154 Sum_probs=91.5
Q ss_pred EEccCCCCCc-----cc-CCCCCcccCEEEccCCCCCC-----CcC-CccccccceeecccCCCCCCC---CCccccccc
Q 005381 538 LQLKNLSLSR-----LG-SFDKLLWVQMLDLSHNELRS-----IEG-LEALQLLSCLNLSNNILGSFT---ALEPIRQLK 602 (699)
Q Consensus 538 L~Ls~n~l~~-----l~-~l~~L~~L~~LdLS~N~L~~-----l~~-l~~L~~L~~L~Ls~N~l~~l~---~~~~l~~l~ 602 (699)
|++++|.++. +. .+..++.|+.|++++|.++. ++. +..+++|+.|++++|.++... ....+..++
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 8899998882 22 56677889999999999863 222 455668999999999886532 112355678
Q ss_pred cccccccccccCCCCCccc-ccccC-CCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccc
Q 005381 603 SLRALNISYNEIGAHSIDT-TKYLC-SSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKF 679 (699)
Q Consensus 603 ~L~~L~Ls~N~I~~lp~~~-~~~l~-~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~ 679 (699)
+|+.|++++|.++...+.. ...+. ...-+..+++.+|.+.. .....+...+..+ +|+.|++++|.+.....
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~------~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD------DGAKDLAEVLAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc------HHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence 8999999999987632111 11111 01122223555555421 1223334566667 89999999999932211
Q ss_pred --hHHHhhcC-Ccccccc
Q 005381 680 --KSFLIKVL-PGLKWLD 694 (699)
Q Consensus 680 --~~~~~~~l-~~L~~LD 694 (699)
...++... +.|+.||
T Consensus 296 ~~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 296 QLLAESLLEPGNELESLW 313 (319)
T ss_pred HHHHHHHhhcCCchhhcc
Confidence 12233334 5666655
No 82
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.28 E-value=9.7e-08 Score=97.52 Aligned_cols=118 Identities=22% Similarity=0.260 Sum_probs=96.2
Q ss_pred CCcHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCccc-CCCCC
Q 005381 476 SHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLG-SFDKL 554 (699)
Q Consensus 476 ~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~-~l~~L 554 (699)
.-+++.....++++.||+|+|++. .+.. ...+.++. .|+||+|.++.+. .-..|
T Consensus 297 ~~iDESvKL~Pkir~L~lS~N~i~-----------------~v~n-La~L~~L~-------~LDLS~N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 297 TQIDESVKLAPKLRRLILSQNRIR-----------------TVQN-LAELPQLQ-------LLDLSGNLLAECVGWHLKL 351 (490)
T ss_pred hhhhhhhhhccceeEEecccccee-----------------eehh-hhhcccce-------EeecccchhHhhhhhHhhh
Confidence 455677788999999999999821 0110 11122222 2999999999876 55678
Q ss_pred cccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCCC
Q 005381 555 LWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHS 618 (699)
Q Consensus 555 ~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp 618 (699)
.+++.|.|+.|.|..+.++.+|-+|..||+++|+|..++....++++|.|+.|.|.+|+|..++
T Consensus 352 GNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred cCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 9999999999999999999999999999999999998877788999999999999999998886
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.27 E-value=6.6e-05 Score=74.83 Aligned_cols=137 Identities=14% Similarity=0.026 Sum_probs=118.0
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHH
Q 005381 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHR 111 (699)
Q Consensus 32 ~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR 111 (699)
+.-...|.+ ..|.+-.+++|+++|++|.+|..|..+.+.++. .+.+-+.|.+++..+|++-.+-+.=
T Consensus 43 l~YL~~gd~-~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge------------~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 43 LGYLQQGDY-AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE------------NDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred HHHHHCCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC------------hhhHHHHHHHHHhcCCCccchhhhh
Confidence 334466777 799999999999999999999999999999975 5677789999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHH--hCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHH
Q 005381 112 KWILSKGHSSIDNELRLLDKFQK--ADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSL 183 (699)
Q Consensus 112 ~w~L~~~~~~~~~EL~~~~k~L~--~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ 183 (699)
+|.|... +.++++...+++++. ..+.-..+|-+.++|.-+.|.. ...-+++.++++.+|.+-.+---...
T Consensus 110 G~FLC~q-g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~-~~A~~~l~raL~~dp~~~~~~l~~a~ 181 (250)
T COG3063 110 GAFLCAQ-GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQF-DQAEEYLKRALELDPQFPPALLELAR 181 (250)
T ss_pred hHHHHhC-CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCc-hhHHHHHHHHHHhCcCCChHHHHHHH
Confidence 9999977 499999999999987 4455567899999999999998 46777889999999999988544443
No 84
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.27 E-value=3e-05 Score=89.58 Aligned_cols=137 Identities=14% Similarity=0.103 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHh
Q 005381 21 AEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100 (699)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~ 100 (699)
..+++.+++........|++ ++|..+...+|+.+|.++.||..-+.|.+..|+ .++.+.+.-.|-..
T Consensus 136 ~~~l~~ll~eAN~lfarg~~-eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd------------~eK~l~~~llAAHL 202 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDL-EEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGD------------IEKALNFWLLAAHL 202 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCccchhhHHHHHHHHHHccc------------HHHHHHHHHHHHhc
Confidence 44567777777666666888 899999999999999999999999999999875 88999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 005381 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNF 172 (699)
Q Consensus 101 nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~ 172 (699)
|||++.-|.+-.-...+. +.+++|.-||.++++.+|.|..--.-|.-+.+++|.. ..+++.+.+++..+|
T Consensus 203 ~p~d~e~W~~ladls~~~-~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~-~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQL-GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL-KRAMETFLQLLQLDP 272 (895)
T ss_pred CCCChHHHHHHHHHHHhc-ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH-HHHHHHHHHHHhhCC
Confidence 999999998887777776 6899999999999999999987777778888999988 679999999999888
No 85
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.26 E-value=3.4e-05 Score=92.84 Aligned_cols=162 Identities=10% Similarity=-0.005 Sum_probs=137.0
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHH
Q 005381 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAW 108 (699)
Q Consensus 29 ~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW 108 (699)
+...-....|.+ ++|++.+.+++..+|....+|.....++...+. +++++..+++++..+|.+..+|
T Consensus 20 d~~~ia~~~g~~-~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~------------~~~A~~~~~~al~~~P~~~~a~ 86 (765)
T PRK10049 20 DWLQIALWAGQD-AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ------------WQNSLTLWQKALSLEPQNDDYQ 86 (765)
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHH
Confidence 333444566777 799999999999999999999999988888765 8999999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Q 005381 109 HHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNL 188 (699)
Q Consensus 109 ~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l 188 (699)
...+-++... +.+++++..++++++.+|.+.. |...+.++...+.+ +++++.++++++.+|.+..++...+.++...
T Consensus 87 ~~la~~l~~~-g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~-~~Al~~l~~al~~~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 87 RGLILTLADA-GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRH-WDELRAMTQALPRAPQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 8888877766 6899999999999999999999 99999999999988 7899999999999999999998887776643
Q ss_pred hhhhccCccchhchHHHHHHHHHHHHHhCCC
Q 005381 189 LKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD 219 (699)
Q Consensus 189 ~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~ 219 (699)
+ ..+++++.++++.. +|+
T Consensus 164 ~------------~~e~Al~~l~~~~~-~p~ 181 (765)
T PRK10049 164 R------------LSAPALGAIDDANL-TPA 181 (765)
T ss_pred C------------ChHHHHHHHHhCCC-CHH
Confidence 2 24667777765554 554
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.25 E-value=1.5e-05 Score=79.34 Aligned_cols=127 Identities=16% Similarity=0.079 Sum_probs=113.2
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
.++..+..-++++|+.+|++|.+|.-|..+.++. +..+.+-+.|.++++++|+|-..-++=||.+...|.| ++...++
T Consensus 49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~-Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~-~eA~q~F 126 (250)
T COG3063 49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKL-GENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP-EEAMQQF 126 (250)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh-HHHHHHH
Confidence 4588999999999999999999999999999987 5889999999999999999999999999999999988 7899999
Q ss_pred HHHHHh--ccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHH
Q 005381 165 EDMICN--NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (699)
Q Consensus 165 ~~~I~~--n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~ 225 (699)
++++.. .+.-.-.|-+.+++-.+.++ ...+-+.+++++..||+...+--
T Consensus 127 ~~Al~~P~Y~~~s~t~eN~G~Cal~~gq------------~~~A~~~l~raL~~dp~~~~~~l 177 (250)
T COG3063 127 ERALADPAYGEPSDTLENLGLCALKAGQ------------FDQAEEYLKRALELDPQFPPALL 177 (250)
T ss_pred HHHHhCCCCCCcchhhhhhHHHHhhcCC------------chhHHHHHHHHHHhCcCCChHHH
Confidence 999984 67777889999988877755 57788899999999999877643
No 87
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=1.2e-07 Score=96.16 Aligned_cols=42 Identities=29% Similarity=0.451 Sum_probs=30.8
Q ss_pred cCCCC-CccEEEecCCCC---CCccchHHHhhcCCccccccCccCC
Q 005381 658 ILKGL-NLTQFDIVGNAI---VNEKFKSFLIKVLPGLKWLDGEQLH 699 (699)
Q Consensus 658 ~l~~L-~L~~LdLs~N~l---~~~~~~~~~~~~l~~L~~LD~~~i~ 699 (699)
.+.++ +|+.|-|..|+- ..+.++..++..||+|+-||..+|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~Vt 128 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVT 128 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCcccc
Confidence 34455 566666666665 4567888888999999999998875
No 88
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=1.9e-07 Score=105.03 Aligned_cols=119 Identities=29% Similarity=0.381 Sum_probs=96.0
Q ss_pred CCCcHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCC
Q 005381 475 ISHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKL 554 (699)
Q Consensus 475 ~~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L 554 (699)
....++.++.++.|+.||++||++.+ .. ..+.+.++ +.|+|+.|.+..++.++.-
T Consensus 176 L~~mD~SLqll~ale~LnLshNk~~~--------------v~-~Lr~l~~L----------khLDlsyN~L~~vp~l~~~ 230 (1096)
T KOG1859|consen 176 LVLMDESLQLLPALESLNLSHNKFTK--------------VD-NLRRLPKL----------KHLDLSYNCLRHVPQLSMV 230 (1096)
T ss_pred HHhHHHHHHHHHHhhhhccchhhhhh--------------hH-HHHhcccc----------cccccccchhccccccchh
Confidence 46678899999999999999998210 11 11222222 2299999999999854432
Q ss_pred -cccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCCC
Q 005381 555 -LWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHS 618 (699)
Q Consensus 555 -~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp 618 (699)
..|+.|.|++|.++.+-++.+|.+|+.|||++|-|.+...+.++..|..|+.|+|.+|++--.|
T Consensus 231 gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 231 GCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 2499999999999999999999999999999999998877788899999999999999997766
No 89
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.19 E-value=2.6e-05 Score=85.14 Aligned_cols=102 Identities=7% Similarity=-0.083 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
+.|.+++..++++|..+|.+..+|.+|+.++... +.+++++..++++++++|.+..+|..++.++..+|.+ +++++++
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~-g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~-~eA~~~~ 93 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKL-GNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY-QTAKAAL 93 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH-HHHHHHH
Confidence 4599999999999999999999999999999987 6999999999999999999999999999999999999 6899999
Q ss_pred HHHHHhccCchHHHHHHHHHHHHh
Q 005381 165 EDMICNNFSNYSAWHNRSLLLSNL 188 (699)
Q Consensus 165 ~~~I~~n~sN~SAW~~R~~ll~~l 188 (699)
+++++.+|.|..+......+...+
T Consensus 94 ~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 94 EKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999998877776665544
No 90
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=1.2e-06 Score=70.03 Aligned_cols=53 Identities=43% Similarity=0.532 Sum_probs=49.9
Q ss_pred eEEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCC
Q 005381 537 CLQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNIL 589 (699)
Q Consensus 537 ~L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l 589 (699)
.|++++|.++.++ .|.++++|++|++++|.++.+++ |.++++|+.|++++|+|
T Consensus 5 ~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 5 SLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp EEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred EEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3999999999887 89999999999999999999987 99999999999999986
No 91
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.16 E-value=2.7e-07 Score=97.61 Aligned_cols=125 Identities=25% Similarity=0.295 Sum_probs=97.7
Q ss_pred CeEEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--Cccccccceeec-ccCCCCCCCCCccccccccccccccc
Q 005381 536 MCLQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNL-SNNILGSFTALEPIRQLKSLRALNIS 610 (699)
Q Consensus 536 ~~L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~L-s~N~l~~l~~~~~l~~l~~L~~L~Ls 610 (699)
..++|..|+|+.|| .|+.+++|+.||||+|.|+.|.+ |.+|.+|..|-+ ++|+|+.++. ..|.+|.+|+.|.+.
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k-~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK-GAFGGLSSLQRLLLN 148 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh-hHhhhHHHHHHHhcC
Confidence 34899999999998 89999999999999999998877 999998776655 5599999854 678999999999999
Q ss_pred cccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 611 YNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 611 ~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
-|+|..++-+.+..+.+++++.++ .|.++.+.. ..|..+ .++.+.+..|++
T Consensus 149 an~i~Cir~~al~dL~~l~lLsly---Dn~~q~i~~----------~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLY---DNKIQSICK----------GTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhccc---chhhhhhcc----------ccccchhccchHhhhcCcc
Confidence 999999876666666666665553 233322211 267777 888888888884
No 92
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.16 E-value=2.1e-06 Score=107.39 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=18.8
Q ss_pred CCCcHHHHHhcccccccCCCCCccccchh
Q 005381 475 ISHSEEVLELYNDLMRLDPTHVQYYKDQH 503 (699)
Q Consensus 475 ~~~~~~~l~~l~~L~~LDls~n~~~~~l~ 503 (699)
....+..++.+++|+.|++++|.....++
T Consensus 670 L~~lp~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 670 LVELPSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred ccccchhhhccCCCCEEeCCCCCCcCccC
Confidence 34455667778888888888766444443
No 93
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.14 E-value=5.1e-07 Score=100.66 Aligned_cols=112 Identities=28% Similarity=0.304 Sum_probs=81.5
Q ss_pred HHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCCcccCEEE
Q 005381 482 LELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKLLWVQMLD 561 (699)
Q Consensus 482 l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L~~L~~Ld 561 (699)
+..+.+|..||+..|.+ +.+......+.++.. |++++|.|+.+..+..++.|+.|+
T Consensus 91 l~~~~~l~~l~l~~n~i-----------------~~i~~~l~~~~~L~~-------L~ls~N~I~~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKI-----------------EKIENLLSSLVNLQV-------LDLSFNKITKLEGLSTLTLLKELN 146 (414)
T ss_pred cccccceeeeeccccch-----------------hhcccchhhhhcchh-------eeccccccccccchhhccchhhhe
Confidence 55677888888888871 111110112233333 888889888888888888888999
Q ss_pred ccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCCC
Q 005381 562 LSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHS 618 (699)
Q Consensus 562 LS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp 618 (699)
+++|.|..++.+..+.+|+.+++++|++..+.... +..+.+|+.+.+++|.|..+.
T Consensus 147 l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 147 LSGNLISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE 202 (414)
T ss_pred eccCcchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc
Confidence 99999988888888888888999999888763201 467788888888888887764
No 94
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.14 E-value=9.6e-07 Score=97.66 Aligned_cols=74 Identities=31% Similarity=0.423 Sum_probs=36.2
Q ss_pred EEccCCCCCccc-CCCCCcccCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG-SFDKLLWVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~-~l~~L~~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
+++++|.+..++ .+..+++|+.|++++|.+..++. ...++.|..|++++|+++.+ |.....+..|+.|.+++|+
T Consensus 145 L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l--~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 145 LDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDL--PPEIELLSALEELDLSNNS 220 (394)
T ss_pred ccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccC--chhhhhhhhhhhhhhcCCc
Confidence 555555555553 45555555555555555555554 22555555555555555544 1222233335555555553
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00016 Score=79.73 Aligned_cols=157 Identities=12% Similarity=0.048 Sum_probs=125.2
Q ss_pred cHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 005381 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHS 120 (699)
Q Consensus 41 ~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~ 120 (699)
.+.++.++.++|.-.=. ..++.++ +.+++++...+.....+|+-...-..++.-..+. +
T Consensus 314 ~~~ai~~~~kaLte~Rt--------~~~ls~l------------k~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~-g 372 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRT--------PDLLSKL------------KEAEKALKEAERKAYINPEKAEEEREKGNEAFKK-G 372 (539)
T ss_pred HHHHHHHHHHHhhhhcC--------HHHHHHH------------HHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc-c
Confidence 36677777774442211 3455544 4588999999999999998877777777666655 6
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchh
Q 005381 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKE 200 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~ 200 (699)
.|..|+..|+++++.+|.+.-++.+|..+.-+++.+ ...++.+++.|+.||.+.-+|..++.++..+-+
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~-~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~---------- 441 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY-PEALKDAKKCIELDPNFIKAYLRKGAALRAMKE---------- 441 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH----------
Confidence 899999999999999999999999999999999988 678999999999999999999999999888844
Q ss_pred chHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005381 201 KVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 201 ~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll 231 (699)
|+.+++.|.+++..||++..+=--.+-.+
T Consensus 442 --ydkAleay~eale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 442 --YDKALEAYQEALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred --HHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 89999999999999998876644333333
No 96
>PLN03150 hypothetical protein; Provisional
Probab=98.13 E-value=2.7e-06 Score=99.59 Aligned_cols=78 Identities=33% Similarity=0.414 Sum_probs=69.1
Q ss_pred EEccCCCCC-ccc-CCCCCcccCEEEccCCCC-CCCcC-CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLS-RLG-SFDKLLWVQMLDLSHNEL-RSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~-~l~-~l~~L~~L~~LdLS~N~L-~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
|+|++|.++ .++ .+..+++|+.|+|++|.| +.+|. +..+++|+.|+|++|.|++. .|..++.+++|+.|+|++|.
T Consensus 423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred EECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCc
Confidence 899999988 445 788999999999999999 57887 99999999999999999874 46789999999999999999
Q ss_pred CCC
Q 005381 614 IGA 616 (699)
Q Consensus 614 I~~ 616 (699)
++.
T Consensus 502 l~g 504 (623)
T PLN03150 502 LSG 504 (623)
T ss_pred ccc
Confidence 964
No 97
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.13 E-value=0.00014 Score=87.09 Aligned_cols=176 Identities=13% Similarity=0.009 Sum_probs=127.1
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHH
Q 005381 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAW 108 (699)
Q Consensus 29 ~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW 108 (699)
.+......+|++ ++|++.+.++++.+|++..+.+ .++...... ...++++..+++++ +|.+....
T Consensus 39 ~~aii~~r~Gd~-~~Al~~L~qaL~~~P~~~~av~--dll~l~~~~----------G~~~~A~~~~eka~--~p~n~~~~ 103 (822)
T PRK14574 39 DSLIIRARAGDT-APVLDYLQEESKAGPLQSGQVD--DWLQIAGWA----------GRDQEVIDVYERYQ--SSMNISSR 103 (822)
T ss_pred HHHHHHHhCCCH-HHHHHHHHHHHhhCccchhhHH--HHHHHHHHc----------CCcHHHHHHHHHhc--cCCCCCHH
Confidence 444555678888 5999999999999999964444 222211111 23789999999999 44444444
Q ss_pred HHH--HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 005381 109 HHR--KWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (699)
Q Consensus 109 ~hR--~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~ 186 (699)
..+ +-+.... +.+++++++++++++.+|.|..++..-.-+....+.+ ++.++...++...+|.+... -.+..+..
T Consensus 104 ~llalA~ly~~~-gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~-~eAl~~l~~l~~~dp~~~~~-l~layL~~ 180 (822)
T PRK14574 104 GLASAARAYRNE-KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG-GVVLKQATELAERDPTVQNY-MTLSYLNR 180 (822)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHhcccCcchHHH-HHHHHHHH
Confidence 445 3355554 6899999999999999999999987554555556666 78999999999999996654 44444443
Q ss_pred HhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCc
Q 005381 187 NLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (699)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~ 234 (699)
.. +...+|++.+++++..+|++..+..-+...+...
T Consensus 181 ~~------------~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~ 216 (822)
T PRK14574 181 AT------------DRNYDALQASSEAVRLAPTSEEVLKNHLEILQRN 216 (822)
T ss_pred hc------------chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 32 2245699999999999999999988666666543
No 98
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.12 E-value=6.4e-07 Score=95.53 Aligned_cols=190 Identities=21% Similarity=0.137 Sum_probs=111.4
Q ss_pred HHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcc-----c-CCCC
Q 005381 480 EVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRL-----G-SFDK 553 (699)
Q Consensus 480 ~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l-----~-~l~~ 553 (699)
..+..+.+|+.|+++.|.+..... ..+. .+.....++. |++++|.++.. . .+..
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~------------~~~~-~l~~~~~L~~-------L~ls~~~~~~~~~~~l~~~l~~ 134 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGC------------GVLE-SLLRSSSLQE-------LKLNNNGLGDRGLRLLAKGLKD 134 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHH------------HHHH-HHhccCcccE-------EEeeCCccchHHHHHHHHHHHh
Confidence 455667788888888877332111 0011 1111012333 88998888731 1 4556
Q ss_pred C-cccCEEEccCCCCCC-----CcC-CccccccceeecccCCCCCCCC---CccccccccccccccccccCCCCCccc-c
Q 005381 554 L-LWVQMLDLSHNELRS-----IEG-LEALQLLSCLNLSNNILGSFTA---LEPIRQLKSLRALNISYNEIGAHSIDT-T 622 (699)
Q Consensus 554 L-~~L~~LdLS~N~L~~-----l~~-l~~L~~L~~L~Ls~N~l~~l~~---~~~l~~l~~L~~L~Ls~N~I~~lp~~~-~ 622 (699)
+ ++|+.|++++|.++. +.. +..+..|+.|++++|.+++... +..+..+++|+.|+|++|.++...... .
T Consensus 135 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 214 (319)
T cd00116 135 LPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA 214 (319)
T ss_pred CCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH
Confidence 6 899999999999862 233 6677789999999999874211 123445568999999999987553211 1
Q ss_pred cccCCCCCcccccCCCCccceeecCCcchhhhhhccC-CCC-CccEEEecCCCCCCccchH--HHhhcCCccccccC
Q 005381 623 KYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFIL-KGL-NLTQFDIVGNAIVNEKFKS--FLIKVLPGLKWLDG 695 (699)
Q Consensus 623 ~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l-~~L-~L~~LdLs~N~l~~~~~~~--~~~~~l~~L~~LD~ 695 (699)
..+...+-+..+++++|.+... ....+...+ ... .|+.|++++|.|....+.. ..+..+++|++||-
T Consensus 215 ~~~~~~~~L~~L~ls~n~l~~~------~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 215 ETLASLKSLEVLNLGDNNLTDA------GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred HHhcccCCCCEEecCCCcCchH------HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence 2233334444457777765321 111111122 234 8999999999994333321 23344567777764
No 99
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=2.1e-06 Score=88.03 Aligned_cols=194 Identities=20% Similarity=0.216 Sum_probs=119.0
Q ss_pred cCCCcHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCC-cccCC-
Q 005381 474 KISHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLS-RLGSF- 551 (699)
Q Consensus 474 ~~~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~-~l~~l- 551 (699)
..|...-.-...+.++++|+..|. ++.+..+..-+.++..++. |+|+.|.+. .|.++
T Consensus 59 ~~gd~~~~~~~~~~v~elDL~~N~--------------iSdWseI~~ile~lP~l~~-------LNls~N~L~s~I~~lp 117 (418)
T KOG2982|consen 59 NEGDVMLFGSSVTDVKELDLTGNL--------------ISDWSEIGAILEQLPALTT-------LNLSCNSLSSDIKSLP 117 (418)
T ss_pred cchhHHHHHHHhhhhhhhhcccch--------------hccHHHHHHHHhcCccceE-------eeccCCcCCCccccCc
Confidence 344444455667888889998886 3345555555655666555 888888887 44554
Q ss_pred CCCcccCEEEccCCCC--CCCcC-CccccccceeecccCCCCCCC-----------CCcccccc----------------
Q 005381 552 DKLLWVQMLDLSHNEL--RSIEG-LEALQLLSCLNLSNNILGSFT-----------ALEPIRQL---------------- 601 (699)
Q Consensus 552 ~~L~~L~~LdLS~N~L--~~l~~-l~~L~~L~~L~Ls~N~l~~l~-----------~~~~l~~l---------------- 601 (699)
..+.+|..|-|.+-.+ +.... +..+|.++.|.+|.|.+..+. ....+..+
T Consensus 118 ~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~ 197 (418)
T KOG2982|consen 118 LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI 197 (418)
T ss_pred ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh
Confidence 4667888888877777 44444 777888888888877442210 00111122
Q ss_pred -ccccccccccccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC--CC-
Q 005381 602 -KSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI--VN- 676 (699)
Q Consensus 602 -~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l--~~- 676 (699)
+++..+-+..|+|.... ........+....++++.|.+ ..|.....+.++ .|..|.+++||+ +.
T Consensus 198 Fpnv~sv~v~e~PlK~~s--~ek~se~~p~~~~LnL~~~~i---------dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTES--SEKGSEPFPSLSCLNLGANNI---------DSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred cccchheeeecCcccchh--hcccCCCCCcchhhhhccccc---------ccHHHHHHHcCCchhheeeccCCccccccc
Confidence 34444444444443332 122222233333334444443 567778889999 999999999999 21
Q ss_pred -ccchHHHhhcCCccccccCccCC
Q 005381 677 -EKFKSFLIKVLPGLKWLDGEQLH 699 (699)
Q Consensus 677 -~~~~~~~~~~l~~L~~LD~~~i~ 699 (699)
..-+..+++.+++++.|+|.+|+
T Consensus 267 ~~err~llIaRL~~v~vLNGskIs 290 (418)
T KOG2982|consen 267 GGERRFLLIARLTKVQVLNGSKIS 290 (418)
T ss_pred CCcceEEEEeeccceEEecCcccc
Confidence 22223467899999999999875
No 100
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.09 E-value=2.5e-06 Score=94.36 Aligned_cols=154 Identities=28% Similarity=0.334 Sum_probs=103.0
Q ss_pred HHHHHhc-ccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCC-CCcc
Q 005381 479 EEVLELY-NDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFD-KLLW 556 (699)
Q Consensus 479 ~~~l~~l-~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~-~L~~ 556 (699)
+.....+ .+|+.||+++|. +..++.....+.+++. |++++|.++.++... .++.
T Consensus 132 ~~~~~~~~~nL~~L~l~~N~-----------------i~~l~~~~~~l~~L~~-------L~l~~N~l~~l~~~~~~~~~ 187 (394)
T COG4886 132 PPLIGLLKSNLKELDLSDNK-----------------IESLPSPLRNLPNLKN-------LDLSFNDLSDLPKLLSNLSN 187 (394)
T ss_pred ccccccchhhcccccccccc-----------------hhhhhhhhhccccccc-------cccCCchhhhhhhhhhhhhh
Confidence 3344445 378888888887 2222222333344444 888888888887554 8888
Q ss_pred cCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCccccc
Q 005381 557 VQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVG 635 (699)
Q Consensus 557 L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~ 635 (699)
|..|++++|++..+|. ...+..|+.|.+++|.+... +..+.++.++..|.+++|++..++ ..+..++.+..++
T Consensus 188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~--~~~~~~~~~l~~l~l~~n~~~~~~----~~~~~l~~l~~L~ 261 (394)
T COG4886 188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL--LSSLSNLKNLSGLELSNNKLEDLP----ESIGNLSNLETLD 261 (394)
T ss_pred hhheeccCCccccCchhhhhhhhhhhhhhcCCcceec--chhhhhcccccccccCCceeeecc----chhccccccceec
Confidence 8889999999988888 45566688888888854333 466777888888888888887642 1223333344456
Q ss_pred CCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 636 SEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 636 l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
+++|.+.-+ + .+..+ +|+.|++++|.+
T Consensus 262 ~s~n~i~~i-----------~-~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 262 LSNNQISSI-----------S-SLGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccccccccc-----------c-cccccCccCEEeccCccc
Confidence 666666332 2 36777 899999999877
No 101
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.09 E-value=1e-05 Score=101.43 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=17.1
Q ss_pred hhhhhhccCCCC-CccEEEecCCC
Q 005381 651 SYWEAYFILKGL-NLTQFDIVGNA 673 (699)
Q Consensus 651 ~~~~~p~~l~~L-~L~~LdLs~N~ 673 (699)
....+|..++++ +|+.|+|++|.
T Consensus 790 ~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 790 SLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred CccccChhhhCCCCCCEEECCCCC
Confidence 344567778888 88888888764
No 102
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.00047 Score=69.65 Aligned_cols=172 Identities=13% Similarity=0.089 Sum_probs=135.4
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHH
Q 005381 30 QFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWH 109 (699)
Q Consensus 30 ~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~ 109 (699)
.|.+....+.. .-|..++.++-..-|..+.+=-..+..++..+. ++++++.++..|..||-+..+.-
T Consensus 58 V~IAAld~~~~-~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~------------~~~A~e~y~~lL~ddpt~~v~~K 124 (289)
T KOG3060|consen 58 VFIAALDTGRD-DLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN------------YKEAIEYYESLLEDDPTDTVIRK 124 (289)
T ss_pred HHHHHHHhcch-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc------------hhhHHHHHHHHhccCcchhHHHH
Confidence 34444455554 688999999888889999988888888887764 89999999999999999877665
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Q 005381 110 HRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLL 189 (699)
Q Consensus 110 hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~ 189 (699)
|+-++.+..+.--++++-++..++.-+.+..||.+-.-+.-..+.+ +.+.=|+++.+-++|-|+-..--.+-++.-.+
T Consensus 125 -RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f-~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 125 -RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF-EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred -HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 6666555445556899999999999999999999998887777777 56666779999999999876555555555443
Q ss_pred hhhccCccchhchHHHHHHHHHHHHHhCCCCchhHH
Q 005381 190 KRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (699)
Q Consensus 190 ~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~ 225 (699)
. .+.++-+.+++.+|+.++|.+.-+|+
T Consensus 203 g---------~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 203 G---------AENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred h---------HHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 3 24468889999999999999988887
No 103
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.06 E-value=1e-06 Score=98.23 Aligned_cols=119 Identities=31% Similarity=0.422 Sum_probs=91.5
Q ss_pred EEccCCCCCcccC-CCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCC
Q 005381 538 LQLKNLSLSRLGS-FDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGA 616 (699)
Q Consensus 538 L~Ls~n~l~~l~~-l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~ 616 (699)
+++.+|.|..+.. +..+++|++|+||+|.|+.+.++..++.|+.|++++|.|+.+ ..+..++.|+.+++++|.+..
T Consensus 100 l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~---~~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 100 LDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDI---SGLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred eeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhc---cCCccchhhhcccCCcchhhh
Confidence 9999999999987 999999999999999999999999999999999999999987 567779999999999999998
Q ss_pred CCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 617 HSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 617 lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
++.+ . +..+.-+..+.+.+|.+..+ ..+..+ .+..+++..|.+
T Consensus 177 ie~~--~-~~~~~~l~~l~l~~n~i~~i------------~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 177 IEND--E-LSELISLEELDLGGNSIREI------------EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred hhhh--h-hhhccchHHHhccCCchhcc------------cchHHHHHHHHhhcccccc
Confidence 8531 0 12222222234455554332 234444 666678888888
No 104
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=8.2e-05 Score=81.88 Aligned_cols=123 Identities=15% Similarity=0.076 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~ 121 (699)
++++...+....++|+-.+.-..+|....+.+ +|..++..|+++|+++|++..++..|.-++.++ +.
T Consensus 341 Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g------------dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL-~~ 407 (539)
T KOG0548|consen 341 EKALKEAERKAYINPEKAEEEREKGNEAFKKG------------DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL-GE 407 (539)
T ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc------------CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH-hh
Confidence 78899999999999999888778877666654 499999999999999999999999999999988 58
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHH
Q 005381 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAW 178 (699)
Q Consensus 122 ~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW 178 (699)
+.++++.|++++++||.+.-+|..++-++..+..| .+.++.+.++++.||++-.+-
T Consensus 408 ~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y-dkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 408 YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY-DKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCchhHHHH
Confidence 99999999999999999999999999999999999 679999999999999987543
No 105
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.0013 Score=66.53 Aligned_cols=161 Identities=10% Similarity=0.110 Sum_probs=129.0
Q ss_pred CCCcHHHHHHHHHHHHhCCCc---hHHHHHHHHH-HHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 005381 38 HIYSKEAVELSTKLLETNPEL---YTAWNYRKLA-VQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (699)
Q Consensus 38 ~~~~~eaL~~~~~~L~~nP~~---ytaWn~R~~~-l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w 113 (699)
...|++.+++...++..-+.- -..|..-..+ +..+-. ....-+..+++.+-...|+|+.+=--.+.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~----------~~~~lAq~C~~~L~~~fp~S~RV~~lkam 94 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDT----------GRDDLAQKCINQLRDRFPGSKRVGKLKAM 94 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHh----------cchHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 344789999999888776665 2456644333 333322 22567778888888889999999988899
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhc
Q 005381 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKV 193 (699)
Q Consensus 114 ~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~ 193 (699)
.++.. +.+++++++|+..++.||-|+...--|--++...|+. .+.++-..+.+++-+.|..||++.+-+...++.
T Consensus 95 ~lEa~-~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~-l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~--- 169 (289)
T KOG3060|consen 95 LLEAT-GNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN-LEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD--- 169 (289)
T ss_pred HHHHh-hchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH---
Confidence 88866 6999999999999999999998866555556777887 578888889999999999999999999887744
Q ss_pred cCccchhchHHHHHHHHHHHHHhCCCCch
Q 005381 194 EGFVSKEKVLPDEYEFVHQAIFTDPDDQS 222 (699)
Q Consensus 194 ~~~~~~~~~~~eeL~~~~~ai~~dP~d~S 222 (699)
|+.+.=|+.+.+-+.|-+.-
T Consensus 170 ---------f~kA~fClEE~ll~~P~n~l 189 (289)
T KOG3060|consen 170 ---------FEKAAFCLEELLLIQPFNPL 189 (289)
T ss_pred ---------HHHHHHHHHHHHHcCCCcHH
Confidence 89999999999999998764
No 106
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.93 E-value=0.0008 Score=72.93 Aligned_cols=161 Identities=12% Similarity=0.040 Sum_probs=120.7
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w 113 (699)
....+.+ ++|++.+.+++..+|++..+|.. ...+..++... ..........+.....+|....++...++
T Consensus 53 ~~~~g~~-~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 53 AWIAGDL-PKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFS--------GMRDHVARVLPLWAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHcCCH-HHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccc--------cCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence 3455666 79999999999999999999886 54444443210 11223333334445677777777777888
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCch----HHHHHHHHHHHHhh
Q 005381 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY----SAWHNRSLLLSNLL 189 (699)
Q Consensus 114 ~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~----SAW~~R~~ll~~l~ 189 (699)
++... +.++++...++++++++|++.+++...+.++...|.+ ++.++++.+++...|.+. ..|.+.+.+....+
T Consensus 123 ~~~~~-G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~-~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 123 GLEEA-GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF-KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHc-CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH-HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 88876 6899999999999999999999999999999999998 678899999999887543 24555665555443
Q ss_pred hhhccCccchhchHHHHHHHHHHHHHhCC
Q 005381 190 KRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (699)
Q Consensus 190 ~~~~~~~~~~~~~~~eeL~~~~~ai~~dP 218 (699)
+ +++++..+++++...|
T Consensus 201 ~------------~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 201 D------------YEAALAIYDTHIAPSA 217 (355)
T ss_pred C------------HHHHHHHHHHHhcccc
Confidence 3 7999999999987776
No 107
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.92 E-value=5.9e-05 Score=61.43 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 005381 58 LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADS 137 (699)
Q Consensus 58 ~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dp 137 (699)
...+|..++.++...++ +++++..++++++.+|+++.+|..|+-+..+....++++++.+++++++||
T Consensus 2 ~a~~~~~~g~~~~~~~~------------~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGD------------YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTH------------HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677778877777654 788888888888888888888888888877662157788888888888776
No 108
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.89 E-value=0.00018 Score=83.30 Aligned_cols=133 Identities=15% Similarity=0.136 Sum_probs=115.9
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
..++++...+..+++++|+++.+|+.-+-+.++. ++.++.+.+--.|..++|+++.-|..-+-....++.+ ..+.-|+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqr-Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i-~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQR-GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI-NQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHc-ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH-HHHHHHH
Confidence 4589999999999999999999999999999987 6899999999999999999999999888888888877 5788888
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCC------CCchhHHHHHHHH
Q 005381 165 EDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP------DDQSGWFYHLWLL 231 (699)
Q Consensus 165 ~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP------~d~SaW~Y~~~Ll 231 (699)
.++|..+|.|+---.-|+.++.++|. +.+|++.+.+++..+| -+..+|.+-+.-.
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~------------~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGD------------LKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhCh------------HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 99999999998888888889888866 6888899999999988 4556666444443
No 109
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.81 E-value=8.1e-05 Score=60.59 Aligned_cols=67 Identities=24% Similarity=0.223 Sum_probs=39.5
Q ss_pred hhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCC
Q 005381 140 FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (699)
Q Consensus 140 ~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP 218 (699)
..+|..++-+....+.+ ++.+++++++|+.+|++..+|..++.+...+++ .++++++.+++++.++|
T Consensus 3 a~~~~~~g~~~~~~~~~-~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~-----------~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDY-EEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGK-----------DYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTT-----------HHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCc-----------cHHHHHHHHHHHHHcCc
Confidence 34566666666666655 456666666666666666666666666555531 15666666666666665
No 110
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.80 E-value=0.0017 Score=68.12 Aligned_cols=196 Identities=15% Similarity=0.110 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHH
Q 005381 19 AKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESAL 98 (699)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L 98 (699)
+.+++--++=.+++++ +.+ .+||.-|-.++..+|++|.|.+.|..+...+++ -..+|.-++++|
T Consensus 36 advekhlElGk~lla~---~Q~-sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGk------------sk~al~Dl~rVl 99 (504)
T KOG0624|consen 36 ADVEKHLELGKELLAR---GQL-SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGK------------SKAALQDLSRVL 99 (504)
T ss_pred HHHHHHHHHHHHHHHh---hhH-HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcC------------CccchhhHHHHH
Confidence 3444444555666654 456 489999999999999999999999999999987 356788899999
Q ss_pred HhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhh-------------hhHHHHHHHhcC--CChHHHHHH
Q 005381 99 RQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHA-------------WNYRRFVAASMN--RSEEDELKY 163 (699)
Q Consensus 99 ~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~ha-------------W~yR~~vl~~l~--~~~e~EL~~ 163 (699)
...|+.+.|=..|+-++-+. +.++++..-++++|+.+|.|-.. |..|..+..-.+ .. ...+++
T Consensus 100 elKpDF~~ARiQRg~vllK~-Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~-~~ai~~ 177 (504)
T KOG0624|consen 100 ELKPDFMAARIQRGVVLLKQ-GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC-QNAIEM 177 (504)
T ss_pred hcCccHHHHHHHhchhhhhc-ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch-hhHHHH
Confidence 99999999999999999887 68999999999999999977543 344433333332 33 678999
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhhhhh----------------ccCcc------chhchHHHHHHHHHHHHHhCCCCc
Q 005381 164 TEDMICNNFSNYSAWHNRSLLLSNLLKRK----------------VEGFV------SKEKVLPDEYEFVHQAIFTDPDDQ 221 (699)
Q Consensus 164 ~~~~I~~n~sN~SAW~~R~~ll~~l~~~~----------------~~~~~------~~~~~~~eeL~~~~~ai~~dP~d~ 221 (699)
++..|++.|=+.|-..+|...+-.-+.-. +++.- ....-.+..|..+..-+.+||++-
T Consensus 178 i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 178 ITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 99999999999999999988766443210 00000 001113555666666667777777
Q ss_pred hhHHHHHHHHc
Q 005381 222 SGWFYHLWLLD 232 (699)
Q Consensus 222 SaW~Y~~~Ll~ 232 (699)
..+-++.-|-.
T Consensus 258 ~Cf~~YKklkK 268 (504)
T KOG0624|consen 258 LCFPFYKKLKK 268 (504)
T ss_pred hHHHHHHHHHH
Confidence 66666555543
No 111
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.80 E-value=1.8e-06 Score=79.29 Aligned_cols=79 Identities=24% Similarity=0.363 Sum_probs=55.0
Q ss_pred EEccCCCCCccc----CCCCCcccCEEEccCCCCCCCcC-Cccc-cccceeecccCCCCCCCCCcccccccccccccccc
Q 005381 538 LQLKNLSLSRLG----SFDKLLWVQMLDLSHNELRSIEG-LEAL-QLLSCLNLSNNILGSFTALEPIRQLKSLRALNISY 611 (699)
Q Consensus 538 L~Ls~n~l~~l~----~l~~L~~L~~LdLS~N~L~~l~~-l~~L-~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~ 611 (699)
++|+.+.+--++ .+.....|+..+||+|.+..+|. |... +.+++|+|++|.|+.+ |..+..++.|+.|+++.
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv--PeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV--PEELAAMPALRSLNLRF 109 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc--hHHHhhhHHhhhccccc
Confidence 666666655443 45556667777888888877777 4443 4677778888888776 56677778888888888
Q ss_pred ccCCCCC
Q 005381 612 NEIGAHS 618 (699)
Q Consensus 612 N~I~~lp 618 (699)
|++...|
T Consensus 110 N~l~~~p 116 (177)
T KOG4579|consen 110 NPLNAEP 116 (177)
T ss_pred Cccccch
Confidence 8777664
No 112
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.80 E-value=1.5e-05 Score=77.93 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=74.6
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIG 615 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~ 615 (699)
++|++|.+-.++.|..++.|..|.|++|.|+.|.+ -..+++|..|.|.+|.|..+..+..+..||.|+.|.+-+|+++
T Consensus 47 iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 47 IDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred ecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchh
Confidence 89999999999999999999999999999999988 5556789999999999999988899999999999999999998
Q ss_pred CCC
Q 005381 616 AHS 618 (699)
Q Consensus 616 ~lp 618 (699)
...
T Consensus 127 ~k~ 129 (233)
T KOG1644|consen 127 HKK 129 (233)
T ss_pred ccc
Confidence 764
No 113
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00036 Score=74.68 Aligned_cols=170 Identities=15% Similarity=0.079 Sum_probs=140.2
Q ss_pred cHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHH------------H
Q 005381 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGA------------W 108 (699)
Q Consensus 41 ~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~a------------W 108 (699)
+.+|...+-.+++.++.+..+-..|+.++..... ...++..++++|..+|..+.+ |
T Consensus 185 ~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~------------~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 185 YDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN------------ADKAINHFQQALRLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred chhHHHHHHHHHhcccchhHHHHhcccccccccc------------hHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHH
Confidence 3799999999999999999999999999887743 677888888888877766654 5
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCC----hhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHH
Q 005381 109 HHRKWILSKGHSSIDNELRLLDKFQKADSRN----FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (699)
Q Consensus 109 ~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN----~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~l 184 (699)
.-|+--+.+. +.+.++-++|..+|.+||.| .+++..|+-|.-++++. .+.+.-|+.++++|++-.-|.+-|+..
T Consensus 253 k~~gN~~fk~-G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl-~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 253 KERGNDAFKN-GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL-REAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HhhhhhHhhc-cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc-hhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 5555544443 68999999999999999986 47888999999999998 789999999999999999999999988
Q ss_pred HHHhhhhhccCccchhchHHHHHHHHHHHHHhC--CCCchhHHHHHHHHcCcCC
Q 005381 185 LSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTD--PDDQSGWFYHLWLLDQTVR 236 (699)
Q Consensus 185 l~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~d--P~d~SaW~Y~~~Ll~~~~~ 236 (699)
-..+.. ++++++.+.+|+.+. +.+...|--...-|.+..+
T Consensus 331 ~l~le~------------~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 331 HLALEK------------WEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR 372 (486)
T ss_pred HHHHHH------------HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh
Confidence 766643 899999999999775 4477777777777766543
No 114
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=2.1e-05 Score=58.60 Aligned_cols=38 Identities=37% Similarity=0.469 Sum_probs=26.2
Q ss_pred cccCEEEccCCCCCCCcC-CccccccceeecccCCCCCC
Q 005381 555 LWVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSF 592 (699)
Q Consensus 555 ~~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l 592 (699)
++|++|++++|+|+.+|+ +..|++|+.|++++|+|+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 357777777777777777 77777777777777777654
No 115
>PLN03150 hypothetical protein; Provisional
Probab=97.74 E-value=3.1e-05 Score=90.75 Aligned_cols=105 Identities=22% Similarity=0.246 Sum_probs=78.9
Q ss_pred ccCEEEccCCCC-CCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCccc
Q 005381 556 WVQMLDLSHNEL-RSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHS 633 (699)
Q Consensus 556 ~L~~LdLS~N~L-~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~l 633 (699)
.++.|+|++|.+ +.+|. +..|++|+.|+|++|.|++. .|..++.+++|+.|+|++|+++... +..+..++.+..
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~i---P~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSI---PESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCC---chHHhcCCCCCE
Confidence 478899999999 56777 99999999999999999864 4677899999999999999997542 233444444555
Q ss_pred ccCCCCccceeecCCcchhhhhhccCCCC--CccEEEecCCCC
Q 005381 634 VGSEWNHGQTVIDDDIKSYWEAYFILKGL--NLTQFDIVGNAI 674 (699)
Q Consensus 634 l~l~~N~l~~~~~~~~~~~~~~p~~l~~L--~L~~LdLs~N~l 674 (699)
+++++|.+.. .+|..+..+ ++..+++.+|+.
T Consensus 495 L~Ls~N~l~g----------~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 495 LNLNGNSLSG----------RVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred EECcCCcccc----------cCChHHhhccccCceEEecCCcc
Confidence 5667776643 234455543 677888888875
No 116
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.0006 Score=66.53 Aligned_cols=99 Identities=20% Similarity=0.164 Sum_probs=58.9
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~ 114 (699)
-.+|+| ++|..-|..+|.+.|...+ --|.. .+..|+-+
T Consensus 106 F~ngdy-eeA~skY~~Ale~cp~~~~--e~rsI---------------------------------------ly~Nraaa 143 (271)
T KOG4234|consen 106 FKNGDY-EEANSKYQEALESCPSTST--EERSI---------------------------------------LYSNRAAA 143 (271)
T ss_pred hhcccH-HHHHHHHHHHHHhCccccH--HHHHH---------------------------------------HHhhhHHH
Confidence 356888 8999999999999999876 22222 12233333
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHH
Q 005381 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSA 177 (699)
Q Consensus 115 L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SA 177 (699)
+-++ ..++.+++-|.++|+++|.+..|.-.|..+..++..+ ++.++-+.+.++.+|++..|
T Consensus 144 ~iKl-~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~-eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 144 LIKL-RKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY-EEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHh-hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHhCcchHHH
Confidence 3333 3455555555566666665555555555555555555 45555556666666655543
No 117
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.70 E-value=1.7e-05 Score=80.41 Aligned_cols=111 Identities=29% Similarity=0.405 Sum_probs=78.5
Q ss_pred CCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCc-cccccccccccccccccCCCCCcccccccCCCCC
Q 005381 552 DKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALE-PIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPL 630 (699)
Q Consensus 552 ~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~-~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~l 630 (699)
..+..|+.|.+.+-.++++..|..|++|+.|.+|.|.+.....+. ....+++|++|+|++|+|..+. +.
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls--tl-------- 109 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS--TL-------- 109 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccc--cc--------
Confidence 344566666777777777777888888888888888443221122 2345688999999998887642 11
Q ss_pred cccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC-CCccchHHHhhcCCccccccCccC
Q 005381 631 SHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI-VNEKFKSFLIKVLPGLKWLDGEQL 698 (699)
Q Consensus 631 l~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~~~~~~~~~~~l~~L~~LD~~~i 698 (699)
.-++.+ +|..|++..|.. ...+++..++..+|+|++||+.-+
T Consensus 110 --------------------------~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 110 --------------------------RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred --------------------------chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 134555 788888888877 566888888999999999998754
No 118
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.70 E-value=0.00065 Score=77.72 Aligned_cols=121 Identities=12% Similarity=0.060 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCCh-HHHHHHHH
Q 005381 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSE-EDELKYTE 165 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~-e~EL~~~~ 165 (699)
-+++.-+...+-.++|-+..+|+-|+-++... +.++++.+.+..++.+||..+.+-.--+-++...|... .+.-.+..
T Consensus 666 ~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~-~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 666 DDEARSCLLEASKIDPLSASVYYLRGLLLEVK-GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred chHHHHHHHHHHhcchhhHHHHHHhhHHHHHH-HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 35777788888899999999999998888765 58899999999999999999999998899998888653 22333778
Q ss_pred HHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC
Q 005381 166 DMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220 (699)
Q Consensus 166 ~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d 220 (699)
.+++.||.|..||+|.+.+++..|. .+++.+||+.|+.+++.+
T Consensus 745 dalr~dp~n~eaW~~LG~v~k~~Gd------------~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 745 DALRLDPLNHEAWYYLGEVFKKLGD------------SKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHccc------------hHHHHHHHHHHHhhccCC
Confidence 9999999999999999999999876 689999999999887654
No 119
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.70 E-value=0.00056 Score=66.59 Aligned_cols=117 Identities=17% Similarity=0.126 Sum_probs=92.2
Q ss_pred HHHHHHHHhCCCchHHHH--HHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhCCC
Q 005381 46 ELSTKLLETNPELYTAWN--YRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS---YGAWHHRKWILSKGHS 120 (699)
Q Consensus 46 ~~~~~~L~~nP~~ytaWn--~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs---y~aW~hR~w~L~~~~~ 120 (699)
+.+..++..+++...++. .++..+...++ +++++..+++++..+|+. ..+|++.+.++.+. +
T Consensus 20 ~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~-g 86 (172)
T PRK02603 20 DLILKILPINKKAKEAFVYYRDGMSAQADGE------------YAEALENYEEALKLEEDPNDRSYILYNMGIIYASN-G 86 (172)
T ss_pred HHHHHHcccccHhhhHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc-C
Confidence 445566666666666554 45555555543 899999999999988764 46898899999887 6
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCC-------------hHHHHHHHHHHHHhccCch
Q 005381 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS-------------EEDELKYTEDMICNNFSNY 175 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~-------------~e~EL~~~~~~I~~n~sN~ 175 (699)
.++++++.+.++++.+|.+..+|...+.+....+.. .++.++++.++++.+|.||
T Consensus 87 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 87 EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 999999999999999999999999999999887763 1457777788888888885
No 120
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=1.6e-05 Score=85.44 Aligned_cols=133 Identities=24% Similarity=0.228 Sum_probs=88.3
Q ss_pred HHHHHhcccccccCCCCCccccchhh--------hHHhhhhcc--chHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcc
Q 005381 479 EEVLELYNDLMRLDPTHVQYYKDQHS--------LVLLQQVTS--NWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRL 548 (699)
Q Consensus 479 ~~~l~~l~~L~~LDls~n~~~~~l~s--------l~~l~~l~~--~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l 548 (699)
-++.+.++.|+.|++++|.+..-..+ +-.+.--.| .+..+....-.+..+.. |+|..|..-.+
T Consensus 165 ~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~-------L~L~~N~~~~~ 237 (505)
T KOG3207|consen 165 LKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEV-------LYLEANEIILI 237 (505)
T ss_pred HHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHH-------hhhhcccccce
Confidence 34567788888888888875221111 100000001 13334433434455444 88888852222
Q ss_pred c--CCCCCcccCEEEccCCCCCCCcC---CccccccceeecccCCCCCCCCCcc-----ccccccccccccccccCCCCC
Q 005381 549 G--SFDKLLWVQMLDLSHNELRSIEG---LEALQLLSCLNLSNNILGSFTALEP-----IRQLKSLRALNISYNEIGAHS 618 (699)
Q Consensus 549 ~--~l~~L~~L~~LdLS~N~L~~l~~---l~~L~~L~~L~Ls~N~l~~l~~~~~-----l~~l~~L~~L~Ls~N~I~~lp 618 (699)
. ...-+..|+.|||++|.+-..+. ...++.|..|+++.+.|+++..|+. ...+++|+.|+++.|+|...+
T Consensus 238 ~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 238 KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred ecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 2 55667889999999999977664 8889999999999999988865554 456789999999999997765
No 121
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.67 E-value=6.3e-06 Score=75.80 Aligned_cols=81 Identities=26% Similarity=0.316 Sum_probs=71.8
Q ss_pred EEccCCCCCccc-CC-CCCcccCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccC
Q 005381 538 LQLKNLSLSRLG-SF-DKLLWVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEI 614 (699)
Q Consensus 538 L~Ls~n~l~~l~-~l-~~L~~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I 614 (699)
++|++|.+..+| .| ...+.++.|+|++|+|+.+|. +..++.|+.|++++|.|... |..+..|.+|-.|+..+|.+
T Consensus 58 i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~--p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 58 ISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAE--PRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred EecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccc--hHHHHHHHhHHHhcCCCCcc
Confidence 899999999887 33 455689999999999999999 99999999999999999876 56677799999999999999
Q ss_pred CCCCcc
Q 005381 615 GAHSID 620 (699)
Q Consensus 615 ~~lp~~ 620 (699)
..+|.+
T Consensus 136 ~eid~d 141 (177)
T KOG4579|consen 136 AEIDVD 141 (177)
T ss_pred ccCcHH
Confidence 999854
No 122
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.00037 Score=67.89 Aligned_cols=119 Identities=14% Similarity=0.086 Sum_probs=95.1
Q ss_pred hCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC---hhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchH
Q 005381 100 QNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN---FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYS 176 (699)
Q Consensus 100 ~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN---~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~S 176 (699)
.+|+...+++.++.++... +.+++++.+++++++.+|.. ..+|...+.+...+|.+ ++.++++.+++..+|.+..
T Consensus 30 ~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQAD-GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEH-DKALEYYHQALELNPKQPS 107 (172)
T ss_pred cHhhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCcccHH
Confidence 3456666677778777766 69999999999999987653 46888899999999998 7899999999999999999
Q ss_pred HHHHHHHHHHHhhhhhc--cCccchhchHHHHHHHHHHHHHhCCCC
Q 005381 177 AWHNRSLLLSNLLKRKV--EGFVSKEKVLPDEYEFVHQAIFTDPDD 220 (699)
Q Consensus 177 AW~~R~~ll~~l~~~~~--~~~~~~~~~~~eeL~~~~~ai~~dP~d 220 (699)
+|..++.++..++.... .........++++++++.+++..+|++
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999988877654211 112233455789999999999999998
No 123
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.64 E-value=0.0021 Score=69.61 Aligned_cols=154 Identities=12% Similarity=-0.033 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHhCCCchH---HHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 005381 42 KEAVELSTKLLETNPELYT---AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG 118 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~yt---aWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~ 118 (699)
+++...+.++...+|...+ .+..+..+....+ .+++++..+++++..+|++..+|.. ++.+...
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g------------~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~ 89 (355)
T cd05804 23 PAAAAKAAAAAQALAARATERERAHVEALSAWIAG------------DLPKALALLEQLLDDYPRDLLALKL-HLGAFGL 89 (355)
T ss_pred chHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHh
Confidence 5667778888888886644 5555655555443 3889999999999999999999885 4443322
Q ss_pred ---CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccC
Q 005381 119 ---HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (699)
Q Consensus 119 ---~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~ 195 (699)
.+..+...+.+......+|...+++...++++...|.+ ++..+.+.++++.+|.+..+++..+.++...++
T Consensus 90 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~-~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~----- 163 (355)
T cd05804 90 GDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY-DRAEEAARRALELNPDDAWAVHAVAHVLEMQGR----- 163 (355)
T ss_pred cccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-----
Confidence 12334444445444456777777778888899999988 678899999999999999999999998887654
Q ss_pred ccchhchHHHHHHHHHHHHHhCCCCc
Q 005381 196 FVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (699)
Q Consensus 196 ~~~~~~~~~eeL~~~~~ai~~dP~d~ 221 (699)
+++++.++.+++...|.+.
T Consensus 164 -------~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 164 -------FKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred -------HHHHHHHHHhhhhccCCCc
Confidence 7999999999999988644
No 124
>PRK11906 transcriptional regulator; Provisional
Probab=97.63 E-value=0.0014 Score=72.17 Aligned_cols=158 Identities=7% Similarity=-0.015 Sum_probs=129.0
Q ss_pred HHHhCCCch---HHH----HHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHhCC-
Q 005381 51 LLETNPELY---TAW----NYRKLAVQHKLTENDSDPDSLKSILDEELRVVESAL---RQNFKSYGAWHHRKWILSKGH- 119 (699)
Q Consensus 51 ~L~~nP~~y---taW----n~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L---~~nPKsy~aW~hR~w~L~~~~- 119 (699)
+...-|++. .+| ..|+.-..+- .+| ...+.++.++.+|+ ..+|....++-.+.|+-....
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~-----~t~----~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~ 310 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYD-----FTP----ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL 310 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhc-----cCH----HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH
Confidence 344447777 777 4455433222 223 45789999999999 999999999999888876421
Q ss_pred -------CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhh
Q 005381 120 -------SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (699)
Q Consensus 120 -------~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~ 192 (699)
....+++++-++++++||.|..|-...++++...+.+ ...+..+++++..+|+.-.+|+|++++...-++
T Consensus 311 ~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~-~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~-- 387 (458)
T PRK11906 311 HGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA-KVSHILFEQAKIHSTDIASLYYYRALVHFHNEK-- 387 (458)
T ss_pred hcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch-hhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC--
Confidence 1245889999999999999999999999999888887 567778899999999999999999999887655
Q ss_pred ccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005381 193 VEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (699)
Q Consensus 193 ~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~L 230 (699)
.+++++.+++|+.++|....+=.-+.|+
T Consensus 388 ----------~~~a~~~i~~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 388 ----------IEEARICIDKSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred ----------HHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 6999999999999999999988888888
No 125
>PRK11906 transcriptional regulator; Provisional
Probab=97.60 E-value=0.0018 Score=71.27 Aligned_cols=135 Identities=9% Similarity=-0.011 Sum_probs=112.8
Q ss_pred CcHHHHHHHHHHH---HhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005381 40 YSKEAVELSTKLL---ETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (699)
Q Consensus 40 ~~~eaL~~~~~~L---~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~ 116 (699)
--++|+.++.+++ .++|++..++-...++-....-.--++ ......+++++-++++..+|.+..|-...+.++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~---~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE---LELAAQKALELLDYVSDITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3468999999999 999999999888887765541100111 2355789999999999999999999988888877
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHH
Q 005381 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWH 179 (699)
Q Consensus 117 ~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~ 179 (699)
.. +.++.++..+++++.++|+...+|.|++|+.-.-|+. ++.++..+++++.+|.---|=-
T Consensus 350 ~~-~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~-~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 350 LS-GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKI-EEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred hh-cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH-HHHHHHHHHHhccCchhhHHHH
Confidence 55 5699999999999999999999999999999999998 7899999999999998665533
No 126
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.59 E-value=0.0024 Score=72.01 Aligned_cols=140 Identities=18% Similarity=0.250 Sum_probs=119.6
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCCh
Q 005381 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY 105 (699)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy 105 (699)
.++......+..+.| ...|.+.+.+|...|+|-..--.+|..|..+++ -+++...+...++.++||+
T Consensus 9 ~lF~~~lk~yE~kQY-kkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~------------~~ea~~~vr~glr~d~~S~ 75 (700)
T KOG1156|consen 9 ALFRRALKCYETKQY-KKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK------------KEEAYELVRLGLRNDLKSH 75 (700)
T ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHHHhCCccchhHHhccchhhcccc------------hHHHHHHHHHHhccCcccc
Confidence 444555556677888 689999999999999999999999999999986 5899999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHH
Q 005381 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHN 180 (699)
Q Consensus 106 ~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~ 180 (699)
-+||--+.+...- ..|++++++|..|+.++|.|-.-|.--..+-.+++.+ +.-++--...++.+|++.-.|.-
T Consensus 76 vCwHv~gl~~R~d-K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~-~~~~~tr~~LLql~~~~ra~w~~ 148 (700)
T KOG1156|consen 76 VCWHVLGLLQRSD-KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY-EGYLETRNQLLQLRPSQRASWIG 148 (700)
T ss_pred hhHHHHHHHHhhh-hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHhhhhhHHHHHH
Confidence 9998888777654 5899999999999999999999999988888888887 44555556778888998888853
No 127
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.58 E-value=0.0057 Score=64.25 Aligned_cols=138 Identities=13% Similarity=0.104 Sum_probs=103.9
Q ss_pred CCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCCh-------------
Q 005381 39 IYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY------------- 105 (699)
Q Consensus 39 ~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy------------- 105 (699)
..+.-||.-.+++|+..||++.|=-.|+.++...+. ++++..-++.+|..+|.+-
T Consensus 86 Gksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge------------le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~ 153 (504)
T KOG0624|consen 86 GKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE------------LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQ 153 (504)
T ss_pred cCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc------------HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHH
Confidence 346788999999999999999999999999998876 8999999999999999443
Q ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHH
Q 005381 106 GAWHHRKWILSKG-HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (699)
Q Consensus 106 ~aW~hR~w~L~~~-~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~l 184 (699)
+-|.-|..+.+.. .+++..++++++.+|++.|=+..-..+|.-++-.-+.+ ..++.-...+-+..-.|-.+.+--+.|
T Consensus 154 e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~-k~AI~Dlk~askLs~DnTe~~ykis~L 232 (504)
T KOG0624|consen 154 EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEP-KKAIHDLKQASKLSQDNTEGHYKISQL 232 (504)
T ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcH-HHHHHHHHHHHhccccchHHHHHHHHH
Confidence 3344454444432 36788999999999999999999989998887766655 445555455555555555665555555
Q ss_pred HHHhh
Q 005381 185 LSNLL 189 (699)
Q Consensus 185 l~~l~ 189 (699)
+..++
T Consensus 233 ~Y~vg 237 (504)
T KOG0624|consen 233 LYTVG 237 (504)
T ss_pred HHhhh
Confidence 55554
No 128
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.58 E-value=0.0011 Score=54.84 Aligned_cols=99 Identities=21% Similarity=0.165 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 005381 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (699)
Q Consensus 107 aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~ 186 (699)
+|..++-++... +.+++++..+.++++.+|.+..+|..++.+....+.+ ++.++++.+++..+|.+..+|...+.+..
T Consensus 2 ~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKL-GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY-EEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHH-hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 455666666554 5788899999999998888888888888888888777 67888888889888888888888887776
Q ss_pred HhhhhhccCccchhchHHHHHHHHHHHHHhCCC
Q 005381 187 NLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD 219 (699)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~ 219 (699)
..+. ++++.+.+..++..+|.
T Consensus 80 ~~~~------------~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 KLGK------------YEEALEAYEKALELDPN 100 (100)
T ss_pred HHHh------------HHHHHHHHHHHHccCCC
Confidence 6543 67788888888877763
No 129
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.58 E-value=0.00075 Score=55.82 Aligned_cols=98 Identities=17% Similarity=0.052 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh
Q 005381 61 AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF 140 (699)
Q Consensus 61 aWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~ 140 (699)
+|..++.++...+. +++++..++.++..+|++..+|..++.++... +.+++++++++++++..|.+.
T Consensus 2 ~~~~~a~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 2 ALLNLGNLYYKLGD------------YDEALEYYEKALELDPDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHHhc------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcch
Confidence 45566666655543 89999999999999999999999999999876 588999999999999999999
Q ss_pred hhhhHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 005381 141 HAWNYRRFVAASMNRSEEDELKYTEDMICNNF 172 (699)
Q Consensus 141 haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~ 172 (699)
.+|...+.+....+.+ ++..+++.++++.+|
T Consensus 69 ~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~ 99 (100)
T cd00189 69 KAYYNLGLAYYKLGKY-EEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHHhH-HHHHHHHHHHHccCC
Confidence 9999999888888876 677888888888776
No 130
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.00078 Score=74.96 Aligned_cols=104 Identities=13% Similarity=0.206 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
+.|++++++++.||..+|.+|..|+.-|-.|.+. .+.++++..|.+|+++.|....+|+.-+...-++|-| .++.+++
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~-~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y-kEA~~hl 521 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANG-NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY-KEAVKHL 521 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCC-cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH-HHHHHHH
Confidence 3499999999999999999999999999999977 5889999999999999999999999999999999999 7899999
Q ss_pred HHHHHhccC----------chHHHHHHHHHHHHhhh
Q 005381 165 EDMICNNFS----------NYSAWHNRSLLLSNLLK 190 (699)
Q Consensus 165 ~~~I~~n~s----------N~SAW~~R~~ll~~l~~ 190 (699)
-.+|..... +...|.+.+..|..+.+
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 999998766 23589999877776644
No 131
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.55 E-value=0.0018 Score=57.82 Aligned_cols=100 Identities=13% Similarity=0.025 Sum_probs=70.5
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC
Q 005381 28 QSQFLHNHHNHIYSKEAVELSTKLLETNPEL---YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (699)
Q Consensus 28 ~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~---ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs 104 (699)
..........|.+ ++|++.+.+++..+|++ ..++...+.++...++ +++++..++.++..+|.+
T Consensus 6 ~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 6 YDAALLVLKAGDY-ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK------------YADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc------------HHHHHHHHHHHHHHCCCC
Confidence 3344444556666 67888888888888776 4667777777776654 777888888888777775
Q ss_pred ---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChh
Q 005381 105 ---YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFH 141 (699)
Q Consensus 105 ---y~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~h 141 (699)
..+|...++++.+. +.+++++..++++++.+|.+-.
T Consensus 73 ~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 73 PKAPDALLKLGMSLQEL-GDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred CcccHHHHHHHHHHHHh-CChHHHHHHHHHHHHHCcCChh
Confidence 45677777777766 4777788888888888777643
No 132
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.52 E-value=2.2e-05 Score=82.48 Aligned_cols=75 Identities=19% Similarity=0.115 Sum_probs=42.6
Q ss_pred CCCccccccccccccCccchhhhhHHHHHHHHHHHHhhhh-ccccccccccHHHHHhhcccCCCCCCCcCCCcHHHHHhc
Q 005381 407 SSPISSLYQLSIKNDNELTDFEWRAATIAKEIDHFRELLS-LINCKIGKLTLARLLMAHDAMMCPPANKISHSEEVLELY 485 (699)
Q Consensus 407 ~~~l~~~~~lsi~~~~~~~~~~~~~~~L~~el~~~~~L~~-~p~nk~~~Ltl~~ll~~~~~l~~~~~~~~~~~~~~l~~l 485 (699)
.+++.++ +||=+|--++ ..+.+-.-|.+.++|.. .-.+.++.........+ ..+..+++...
T Consensus 29 ~~s~~~l-~lsgnt~G~E-----Aa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~-----------L~~l~~aL~~~ 91 (382)
T KOG1909|consen 29 MDSLTKL-DLSGNTFGTE-----AARAIAKVLASKKELREVNLSDMFTGRLKDEIPEA-----------LKMLSKALLGC 91 (382)
T ss_pred cCceEEE-eccCCchhHH-----HHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHH-----------HHHHHHHHhcC
Confidence 3455566 6666666666 55667777777777775 11112221111111111 23345566667
Q ss_pred ccccccCCCCCcc
Q 005381 486 NDLMRLDPTHVQY 498 (699)
Q Consensus 486 ~~L~~LDls~n~~ 498 (699)
.+|++||+|.|.+
T Consensus 92 ~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 92 PKLQKLDLSDNAF 104 (382)
T ss_pred CceeEeecccccc
Confidence 7999999999985
No 133
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.47 E-value=0.0017 Score=74.46 Aligned_cols=125 Identities=18% Similarity=0.106 Sum_probs=108.5
Q ss_pred CCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 005381 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK 117 (699)
Q Consensus 38 ~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~ 117 (699)
...+++|..+..++=.+.|-....|+-||.++...+. ..++...|..++..||....+-.--+-++.+
T Consensus 663 ~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~------------~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 663 SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ------------LEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh------------hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 4446789999999999999999999999988876654 8999999999999999999999999998887
Q ss_pred CC-CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCch
Q 005381 118 GH-SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (699)
Q Consensus 118 ~~-~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~ 175 (699)
.+ ......-.+...++++||.|..||+|-|-+++..|.. +++-+|++.++...+++.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~-~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS-KQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch-HHHHHHHHHHHhhccCCC
Confidence 64 3344555588889999999999999999999999998 688999999999888764
No 134
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.47 E-value=0.0048 Score=70.64 Aligned_cols=147 Identities=10% Similarity=-0.021 Sum_probs=100.1
Q ss_pred HhCCCchHHHHH--HHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC---CC----ChH
Q 005381 53 ETNPELYTAWNY--RKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG---HS----SID 123 (699)
Q Consensus 53 ~~nP~~ytaWn~--R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~---~~----~~~ 123 (699)
..-|.+..||-. |++-..... + ...+..++++++++++.+|.+..+|..+.++.... .+ .+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~-----~----~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~ 401 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSG-----D----AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLA 401 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcC-----C----HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 455666666663 443222211 1 24578999999999999999999998877755421 11 123
Q ss_pred HHHHHHHHHHHh--CCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhc
Q 005381 124 NELRLLDKFQKA--DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEK 201 (699)
Q Consensus 124 ~EL~~~~k~L~~--dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~ 201 (699)
...+...+++.+ ++....++.=.+.+....+.+ +++...++++++.+|+ .-+|..++.+....|+
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~-~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~----------- 468 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKT-DEAYQAINKAIDLEMS-WLNYVLLGKVYELKGD----------- 468 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCC-----------
Confidence 444455555553 666655444334443344555 6788888999999994 6789999888777655
Q ss_pred hHHHHHHHHHHHHHhCCCCch
Q 005381 202 VLPDEYEFVHQAIFTDPDDQS 222 (699)
Q Consensus 202 ~~~eeL~~~~~ai~~dP~d~S 222 (699)
.+++++.+.+|+.++|.++.
T Consensus 469 -~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 469 -NRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred -HHHHHHHHHHHHhcCCCCch
Confidence 79999999999999999985
No 135
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.47 E-value=0.0056 Score=73.62 Aligned_cols=136 Identities=10% Similarity=0.045 Sum_probs=102.8
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCchHHHHHH--HHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 005381 36 HNHIYSKEAVELSTKLLETNPELYTAWNYR--KLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R--~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w 113 (699)
..|.+ ++|+..+++++ +|++....-.+ ..+....+ .+.++++.++++++.+|++..++..-.-
T Consensus 80 ~~G~~-~~A~~~~eka~--~p~n~~~~~llalA~ly~~~g------------dyd~Aiely~kaL~~dP~n~~~l~gLa~ 144 (822)
T PRK14574 80 WAGRD-QEVIDVYERYQ--SSMNISSRGLASAARAYRNEK------------RWDQALALWQSSLKKDPTNPDLISGMIM 144 (822)
T ss_pred HcCCc-HHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 33555 79999999998 66655555555 33444443 3889999999999999999999875533
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Q 005381 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLL 189 (699)
Q Consensus 114 ~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~ 189 (699)
+.... +..+++++.++++...+|.+... -.+.++....+.. .++++.++++++.+|.|..+..-+..++..++
T Consensus 145 ~y~~~-~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~-~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 145 TQADA-GRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRN-YDALQASSEAVRLAPTSEEVLKNHLEILQRNR 217 (822)
T ss_pred HHhhc-CCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 33444 57889999999999999997776 6667777666666 35999999999999999999888887777664
No 136
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.46 E-value=0.0026 Score=60.52 Aligned_cols=82 Identities=6% Similarity=-0.072 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHH
Q 005381 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~ 166 (699)
++++..+|..+...+|.++..|..-+-+.+.. +.|++++.+|.+++.++|.|+.+-.|-+-+.-.+|.. +...+.+..
T Consensus 51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~-g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~-~~A~~aF~~ 128 (157)
T PRK15363 51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ-KHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV-CYAIKALKA 128 (157)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH-HHHHHHHHH
Confidence 66666677766677777777776666666655 4666677777777777776666666666666666665 445555555
Q ss_pred HHHh
Q 005381 167 MICN 170 (699)
Q Consensus 167 ~I~~ 170 (699)
+|..
T Consensus 129 Ai~~ 132 (157)
T PRK15363 129 VVRI 132 (157)
T ss_pred HHHH
Confidence 5554
No 137
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.41 E-value=0.0037 Score=60.51 Aligned_cols=134 Identities=10% Similarity=0.003 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh---hhhhHHHHHHHhcCCChHHH
Q 005381 86 ILDEELRVVESALRQNFKS--YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF---HAWNYRRFVAASMNRSEEDE 160 (699)
Q Consensus 86 ~~~eEL~~~~~~L~~nPKs--y~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~---haW~yR~~vl~~l~~~~e~E 160 (699)
.+....+.+...++.+++. ..+|+..+.+.... +.+++++..+.+++.+.|..+ .+|...+.+....+.+ +++
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~-g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~-~eA 91 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSE-GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH-TKA 91 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH-HHH
Confidence 3555556666666666665 67778888877766 689999999999999877643 4889999999999998 689
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHhhhhh--ccCccchhchHHHHHHHHHHHHHhCCCCc
Q 005381 161 LKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK--VEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (699)
Q Consensus 161 L~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~--~~~~~~~~~~~~eeL~~~~~ai~~dP~d~ 221 (699)
++++.+++..+|.+..+|.+++.+...+++.. ..........++++++.+.+++..+|.+.
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999999988665321 11122233456788899999999999654
No 138
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.39 E-value=0.0069 Score=68.36 Aligned_cols=180 Identities=17% Similarity=0.205 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~ 121 (699)
+||+++.+.+|+..|++.-.|...|.+..+++. ++.+-+.|..-++..|.+...|---.-+=++. +.
T Consensus 668 eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~------------ie~aR~aY~~G~k~cP~~ipLWllLakleEk~-~~ 734 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN------------IEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD-GQ 734 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH------------HHHHHHHHHhccccCCCCchHHHHHHHHHHHh-cc
Confidence 799999999999999999999999999988854 67777778888888888888875544444433 35
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhh--------c
Q 005381 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK--------V 193 (699)
Q Consensus 122 ~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~--------~ 193 (699)
+-++-..++++.-.+|+|.--|--..-+=.+.|...+ +-....+++..-|++--.|.---++..+-.+.. .
T Consensus 735 ~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~-a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc 813 (913)
T KOG0495|consen 735 LVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQ-AELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC 813 (913)
T ss_pred hhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc
Confidence 6677777888888888888877766555555565533 333447777778888877776666555433321 0
Q ss_pred cCcc----------chhchHHHHHHHHHHHHHhCCC--CchhHHHHHHHHcCcC
Q 005381 194 EGFV----------SKEKVLPDEYEFVHQAIFTDPD--DQSGWFYHLWLLDQTV 235 (699)
Q Consensus 194 ~~~~----------~~~~~~~eeL~~~~~ai~~dP~--d~SaW~Y~~~Ll~~~~ 235 (699)
.... -.+..++.+.+.|.+|+..||+ |.-+|||+--|...++
T Consensus 814 e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 814 EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCH
Confidence 0000 1234578999999999999997 6666777777776644
No 139
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.39 E-value=2.3e-05 Score=82.30 Aligned_cols=69 Identities=26% Similarity=0.213 Sum_probs=34.3
Q ss_pred CCCCCcccCEEEccCCCCCC--CcC----CccccccceeecccCCCCCCCC------------Ccccccccccccccccc
Q 005381 550 SFDKLLWVQMLDLSHNELRS--IEG----LEALQLLSCLNLSNNILGSFTA------------LEPIRQLKSLRALNISY 611 (699)
Q Consensus 550 ~l~~L~~L~~LdLS~N~L~~--l~~----l~~L~~L~~L~Ls~N~l~~l~~------------~~~l~~l~~L~~L~Ls~ 611 (699)
.+..++.|+.||||.|-++. +++ +..+..|+.|.|++|.+..... ....+.-+.|+++..++
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 34445566666666666632 222 4555556666666665533210 01122234566666666
Q ss_pred ccCCCCC
Q 005381 612 NEIGAHS 618 (699)
Q Consensus 612 N~I~~lp 618 (699)
|++..-+
T Consensus 167 Nrlen~g 173 (382)
T KOG1909|consen 167 NRLENGG 173 (382)
T ss_pred ccccccc
Confidence 6665543
No 140
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.38 E-value=6.6e-05 Score=55.92 Aligned_cols=40 Identities=35% Similarity=0.419 Sum_probs=33.7
Q ss_pred cccceeecccCCCCCCCCCccccccccccccccccccCCCCC
Q 005381 577 QLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHS 618 (699)
Q Consensus 577 ~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp 618 (699)
++|+.|++++|+|+.+ +..++.|++|+.|++++|+|+.++
T Consensus 1 ~~L~~L~l~~N~i~~l--~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL--PPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSH--GGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCccc--CchHhCCCCCCEEEecCCCCCCCc
Confidence 4799999999999987 344899999999999999999875
No 141
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.011 Score=69.69 Aligned_cols=179 Identities=14% Similarity=0.095 Sum_probs=144.3
Q ss_pred cHHHHHHHHHHHHhCCCchHHHHHHHHH-HHhhhccC-----------------------------------CCCchhhh
Q 005381 41 SKEAVELSTKLLETNPELYTAWNYRKLA-VQHKLTEN-----------------------------------DSDPDSLK 84 (699)
Q Consensus 41 ~~eaL~~~~~~L~~nP~~ytaWn~R~~~-l~~l~~~~-----------------------------------~~~~~~~~ 84 (699)
..+|......++.+|.++.++|-+-|.+ +....... ..+|+...
T Consensus 546 ~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~k 625 (1018)
T KOG2002|consen 546 LYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEK 625 (1018)
T ss_pred cHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHH
Confidence 3799999999999999999999999843 32221110 01344566
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
+.++.++.+|.++|+.+|||-.|=+.-+.||... +.+.+++..+.++.+--..+..+|-+-+-|+-..+.| ..+++-|
T Consensus 626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~k-g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy-~~AIqmY 703 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEK-GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY-RLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhc-cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH-HHHHHHH
Confidence 7789999999999999999999999999999866 6899999999998887778999999999998888888 5788888
Q ss_pred HHHHHhcc--CchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 165 EDMICNNF--SNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 165 ~~~I~~n~--sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
...++... .++...||.+.++...+ .|+++.+....|+...|.|.+.=|-+..++.+
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~------------~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAG------------KLQEAKEALLKARHLAPSNTSVKFNLALVLKK 762 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHhCCccchHHhHHHHHHHH
Confidence 88887643 34566777776665543 38999999999999999999998888888765
No 142
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.29 E-value=0.0028 Score=60.39 Aligned_cols=102 Identities=7% Similarity=-0.063 Sum_probs=89.1
Q ss_pred CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHH
Q 005381 102 FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNR 181 (699)
Q Consensus 102 PKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R 181 (699)
++.-..-+-.+..+.+. ++++++..++..+..+||.|+..|..-+-+.+.++.+ +++++.+.+++..+|+|+.+..|.
T Consensus 32 ~~~l~~lY~~A~~ly~~-G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~-~~AI~aY~~A~~L~~ddp~~~~~a 109 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEV-KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHW-GEAIYAYGRAAQIKIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCCCCchHHHHH
Confidence 44445555666667666 6999999999999999999999999999999999999 789999999999999999999999
Q ss_pred HHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhC
Q 005381 182 SLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTD 217 (699)
Q Consensus 182 ~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~d 217 (699)
+..+..++. .+.+.++++.||...
T Consensus 110 g~c~L~lG~------------~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 110 AECYLACDN------------VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHcCC------------HHHHHHHHHHHHHHh
Confidence 999998866 578888888888665
No 143
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.24 E-value=0.018 Score=63.48 Aligned_cols=121 Identities=12% Similarity=0.031 Sum_probs=84.3
Q ss_pred CCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005381 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA 135 (699)
Q Consensus 56 P~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~ 135 (699)
|.-..+|+-+.......+. +++++..++.+++..|+|...|..+.-++-.. ....++++.+++++..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~------------~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~-nk~~~A~e~~~kal~l 369 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQ------------YDEALKLLQPLIAAQPDNPYYLELAGDILLEA-NKAKEAIERLKKALAL 369 (484)
T ss_pred ccchHHHHHHHHHHHHhcc------------cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhc
Confidence 6666677666554444432 66777777777777777777777777777655 3667777777777777
Q ss_pred CCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhh
Q 005381 136 DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (699)
Q Consensus 136 dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~ 190 (699)
+|...-.|...+-++-+.|.+ .+.+....+.+..+|.|--.|.+.......++.
T Consensus 370 ~P~~~~l~~~~a~all~~g~~-~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 370 DPNSPLLQLNLAQALLKGGKP-QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred CCCccHHHHHHHHHHHhcCCh-HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 777777777777777777777 466677777777777777777777776666554
No 144
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.23 E-value=0.0045 Score=59.93 Aligned_cols=120 Identities=15% Similarity=0.119 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhCCCc--hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHh
Q 005381 43 EAVELSTKLLETNPEL--YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY---GAWHHRKWILSK 117 (699)
Q Consensus 43 eaL~~~~~~L~~nP~~--ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy---~aW~hR~w~L~~ 117 (699)
.+.+....++..++.. ..+|+..+.+....+. +++++..+.+++...|+.. .+|...+.++..
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~------------~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGE------------YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS 84 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 4444455555566666 5677777777776654 8999999999999888754 488888888887
Q ss_pred CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHH-------hcCCCh------HHHHHHHHHHHHhccCch
Q 005381 118 GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAA-------SMNRSE------EDELKYTEDMICNNFSNY 175 (699)
Q Consensus 118 ~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~-------~l~~~~------e~EL~~~~~~I~~n~sN~ 175 (699)
. +.+++++++++++++++|.+..+|...+.+.. .+|.+. .+.++.+.+++..+|.++
T Consensus 85 ~-g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 85 N-GEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred c-CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 7 69999999999999999999999999999998 444441 244555666777777665
No 145
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.23 E-value=0.0013 Score=52.75 Aligned_cols=53 Identities=26% Similarity=0.323 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 005381 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN 139 (699)
Q Consensus 86 ~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN 139 (699)
.+++++..++.+++.+|++..+|...++++... +.+++++..++++++.+|.|
T Consensus 12 ~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ-GRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT-
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCC
Confidence 488999999999999999999999999999877 58899999999999999876
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.22 E-value=0.008 Score=53.57 Aligned_cols=90 Identities=10% Similarity=-0.025 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC---hhhhhHHHHHHHhcCCChHH
Q 005381 86 ILDEELRVVESALRQNFKS---YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN---FHAWNYRRFVAASMNRSEED 159 (699)
Q Consensus 86 ~~~eEL~~~~~~L~~nPKs---y~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN---~haW~yR~~vl~~l~~~~e~ 159 (699)
.+++++..++.++..+|++ ..++...+.++.+. +.+++++..+++++..+|.+ ..+|...++++..++.+ ++
T Consensus 17 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~ 94 (119)
T TIGR02795 17 DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ-GKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDK-EK 94 (119)
T ss_pred CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCCh-HH
Confidence 4899999999999999987 56888888888876 68999999999999999986 45788889999999988 67
Q ss_pred HHHHHHHHHHhccCchHH
Q 005381 160 ELKYTEDMICNNFSNYSA 177 (699)
Q Consensus 160 EL~~~~~~I~~n~sN~SA 177 (699)
.++++.++++.+|.+-.+
T Consensus 95 A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 95 AKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHHHHHCcCChhH
Confidence 889999999999987643
No 147
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.22 E-value=0.0041 Score=72.98 Aligned_cols=160 Identities=10% Similarity=0.082 Sum_probs=92.4
Q ss_pred cHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 005381 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHS 120 (699)
Q Consensus 41 ~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~ 120 (699)
+..++..+-++|.++|....+|-+-|.+....- +...+-.+|++|...+|-.+.+|-.-.-+.-.. +
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~------------Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~-~ 540 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSD------------DMKRAKKCFDKAFELDATDAEAAAASADTYAEE-S 540 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH------------HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcc-c
Confidence 678888888888888888888888887776552 366777788888888888888877666555543 3
Q ss_pred ChHHHHHHHHHHHHhCCCCh--hhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccc
Q 005381 121 SIDNELRLLDKFQKADSRNF--HAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVS 198 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~dprN~--haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~ 198 (699)
.|+.+++.|-++-+.+|.-- ..|.+||-..-..+.. .+.+..+..+++.+|.++.+|--.+.+...-++
T Consensus 541 ~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~-h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr-------- 611 (1238)
T KOG1127|consen 541 TWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNL-HGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR-------- 611 (1238)
T ss_pred cHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccch-hhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc--------
Confidence 55555555555555544333 2333333222111111 234444455555555555555555544443322
Q ss_pred hhchHHHHHHHHHHHHHhCCCCchhHHH
Q 005381 199 KEKVLPDEYEFVHQAIFTDPDDQSGWFY 226 (699)
Q Consensus 199 ~~~~~~eeL~~~~~ai~~dP~d~SaW~Y 226 (699)
|..++..+++|..++|.+--+=|+
T Consensus 612 ----y~~AlKvF~kAs~LrP~s~y~~fk 635 (1238)
T KOG1127|consen 612 ----YSHALKVFTKASLLRPLSKYGRFK 635 (1238)
T ss_pred ----eehHHHhhhhhHhcCcHhHHHHHH
Confidence 445555555555555554444333
No 148
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.19 E-value=0.00098 Score=53.51 Aligned_cols=62 Identities=21% Similarity=0.180 Sum_probs=54.2
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCCh
Q 005381 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY 105 (699)
Q Consensus 31 ~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy 105 (699)
.......|++ ++|+..+.+++..+|++..+|...+.++...++ +++++..+++++..+|.+.
T Consensus 4 a~~~~~~g~~-~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~------------~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 4 ARALYQQGDY-DEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR------------YDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHCTHH-HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHCcCCC
Confidence 3445667787 899999999999999999999999999998866 9999999999999999874
No 149
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.19 E-value=0.0041 Score=70.20 Aligned_cols=127 Identities=13% Similarity=0.182 Sum_probs=111.2
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
+.|..-|.+.+.+|+..|+....-.-+|-.|..+ +.-+++.++|...+..|++..-||+=-|.+.+.-+.| .++++++
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~l-g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y-~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCL-GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY-DEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcc-cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH-HHHHHHH
Confidence 4588999999999999999999999999999987 5889999999999999999999999999998888888 5799999
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHH
Q 005381 165 EDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (699)
Q Consensus 165 ~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~ 225 (699)
..++...+.|-+.|.-.+.|-.+|+. |+--++.=...+..+|.....|.
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd------------~~~~~~tr~~LLql~~~~ra~w~ 147 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRD------------YEGYLETRNQLLQLRPSQRASWI 147 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHh------------hhhHHHHHHHHHHhhhhhHHHHH
Confidence 99999999999999999988888755 44455555566677777777775
No 150
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.012 Score=65.58 Aligned_cols=179 Identities=14% Similarity=0.066 Sum_probs=131.0
Q ss_pred CCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCC---------------CCch-------hhhhhHHHHHHHHH
Q 005381 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND---------------SDPD-------SLKSILDEELRVVE 95 (699)
Q Consensus 38 ~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~---------------~~~~-------~~~~~~~eEL~~~~ 95 (699)
+.+ .||=+++.++-.++|.+..||-.-|..+.-.+..+. .-|- .....++-+=.|+.
T Consensus 326 ~k~-seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 326 GKY-SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cCc-HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 444 588888899999999999999888877654432100 0010 00123455556777
Q ss_pred HHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-------CCCChhhhhHHHHHHHhcCCChHHHHHHHHHHH
Q 005381 96 SALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA-------DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMI 168 (699)
Q Consensus 96 ~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~-------dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I 168 (699)
.|+.++|..+-+-|.-+-+.... ..|.+|+..+.+++.. -++-...|..-|-+.++++.+ ++++.++.+++
T Consensus 405 ~A~ai~P~Dplv~~Elgvvay~~-~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~-~eAI~~~q~aL 482 (611)
T KOG1173|consen 405 QALAIAPSDPLVLHELGVVAYTY-EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY-EEAIDYYQKAL 482 (611)
T ss_pred HHHhcCCCcchhhhhhhheeehH-hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH-HHHHHHHHHHH
Confidence 78888888877777766666544 4788899999888831 122334588889999999999 78999999999
Q ss_pred HhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005381 169 CNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 169 ~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll 231 (699)
...|.|.++..-.+++-..++. ++.|++.+++|+.++|+|+.+=--+.-.+
T Consensus 483 ~l~~k~~~~~asig~iy~llgn------------ld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGN------------LDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcC------------hHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 9999999998888888776644 79999999999999999987755444333
No 151
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.12 E-value=0.038 Score=61.63 Aligned_cols=184 Identities=13% Similarity=-0.066 Sum_probs=128.8
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccC-------------CCCchhhh----hh----HH-----
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEN-------------DSDPDSLK----SI----LD----- 88 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~-------------~~~~~~~~----~~----~~----- 88 (699)
...|.+ ++|++..+.++..+|++..++..-+.+....+.-. ..+++... .. +.
T Consensus 164 l~~~~~-~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 164 LAQNEL-HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666 79999999999999999999887777665554311 01111110 00 11
Q ss_pred HHHHHHHHHHHhCC----CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhh--hHHHHHHHhcCCChHHHHH
Q 005381 89 EELRVVESALRQNF----KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAW--NYRRFVAASMNRSEEDELK 162 (699)
Q Consensus 89 eEL~~~~~~L~~nP----Ksy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW--~yR~~vl~~l~~~~e~EL~ 162 (699)
+..+.+..+....| ++..++..-.-.+... +.++++++.++++++.+|.+.... ..+....-.-+.. .+.++
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~-g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~-~~~~~ 320 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDC-DDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDN-EKLEK 320 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCCh-HHHHH
Confidence 11235556666677 5888888877777666 589999999999999999987642 4444433222333 67888
Q ss_pred HHHHHHHhccCch--HHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHH--HHHHhCCCCchhHHHHHHHHcCc
Q 005381 163 YTEDMICNNFSNY--SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVH--QAIFTDPDDQSGWFYHLWLLDQT 234 (699)
Q Consensus 163 ~~~~~I~~n~sN~--SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~--~ai~~dP~d~SaW~Y~~~Ll~~~ 234 (699)
..+++++.+|.|. ......+++..+.+. ++++.+++. .++..+|+++... .+.-++.+.
T Consensus 321 ~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~------------~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~ 383 (409)
T TIGR00540 321 LIEKQAKNVDDKPKCCINRALGQLLMKHGE------------FIEAADAFKNVAACKEQLDANDLA-MAADAFDQA 383 (409)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHccc------------HHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHc
Confidence 9999999999999 777788888876643 899999999 6888999988866 445555443
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.11 E-value=0.011 Score=67.72 Aligned_cols=128 Identities=9% Similarity=0.002 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhCC
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ--NFKSYGAWHHRKWILSKGH 119 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~--nPKsy~aW~hR~w~L~~~~ 119 (699)
++|+++++++++.+|++..+|-.+..+...... -++ .....+....+..++++.. +|....++.-.+.+... .
T Consensus 359 ~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~---~~~-~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-~ 433 (517)
T PRK10153 359 NKASDLLEEILKSEPDFTYAQAEKALADIVRHS---QQP-LDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV-K 433 (517)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh---cCC-ccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-c
Confidence 689999999999999999999987765433321 111 1112345556666666664 55555444433333332 3
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchH
Q 005381 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYS 176 (699)
Q Consensus 120 ~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~S 176 (699)
++++++...++++++++| +.-+|.+.+.+....|++ +++++.+.+++..+|.+..
T Consensus 434 g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~-~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 434 GKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDN-RLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCch
Confidence 689999999999999999 688999999999999999 7899999999999999884
No 153
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.01 E-value=0.075 Score=58.69 Aligned_cols=119 Identities=18% Similarity=0.174 Sum_probs=99.1
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 005381 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (699)
Q Consensus 31 ~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~h 110 (699)
..+....+++ ++|+..+..++...|++...|-.+..++....+ ..++++.+++++..+|.++..|..
T Consensus 313 A~~~~~~~~~-d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk------------~~~A~e~~~kal~l~P~~~~l~~~ 379 (484)
T COG4783 313 ALQTYLAGQY-DEALKLLQPLIAAQPDNPYYLELAGDILLEANK------------AKEAIERLKKALALDPNSPLLQLN 379 (484)
T ss_pred HHHHHHhccc-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHhcCCCccHHHHH
Confidence 3445566777 588888999999999999999999988887765 789999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHH
Q 005381 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKY 163 (699)
Q Consensus 111 R~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~ 163 (699)
.+-++-+. +.+.+++..++..+..+|.|...|+|-.-....+|...++...+
T Consensus 380 ~a~all~~-g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 380 LAQALLKG-GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHhc-CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 99888877 57889999999999999999999999988888888775444443
No 154
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.00 E-value=0.0027 Score=69.79 Aligned_cols=70 Identities=13% Similarity=0.007 Sum_probs=52.4
Q ss_pred hCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHhCCCChHHHHHHHH
Q 005381 54 TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGA---WHHRKWILSKGHSSIDNELRLLD 130 (699)
Q Consensus 54 ~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~a---W~hR~w~L~~~~~~~~~EL~~~~ 130 (699)
.+|+++.+|+.++.++..+++ |++++..++++|+++|.+..+ |++++.++..+ +.+++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGr------------yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L-Gr~dEAla~Lr 136 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGR------------VKDALAQFETALELNPNPDEAQAAYYNKACCHAYR-EEGKKAADCLR 136 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 577777777777777777755 777777777777777777743 77777777766 57777777777
Q ss_pred HHHHhC
Q 005381 131 KFQKAD 136 (699)
Q Consensus 131 k~L~~d 136 (699)
+++++.
T Consensus 137 rALels 142 (453)
T PLN03098 137 TALRDY 142 (453)
T ss_pred HHHHhc
Confidence 777763
No 155
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.92 E-value=0.0032 Score=69.32 Aligned_cols=74 Identities=7% Similarity=0.023 Sum_probs=66.8
Q ss_pred hCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh---hhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCch
Q 005381 100 QNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF---HAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (699)
Q Consensus 100 ~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~---haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~ 175 (699)
.+|+.+.+|++++.++... ++|++++..|+++|+++|.+. .+|++++.++..+|.. +++++++.++|+.++..+
T Consensus 70 ~dP~~a~a~~NLG~AL~~l-GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~-dEAla~LrrALelsn~~f 146 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSK-GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEG-KKAADCLRTALRDYNLKF 146 (453)
T ss_pred CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhcchhH
Confidence 5999999999999999987 699999999999999999998 4599999999999998 789999999999843334
No 156
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.91 E-value=0.0098 Score=69.96 Aligned_cols=136 Identities=14% Similarity=0.089 Sum_probs=118.2
Q ss_pred cHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 005381 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHS 120 (699)
Q Consensus 41 ~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~ 120 (699)
-+.|+++|.++|..+|++..|=|.-+.||.+-++ +.++++++.++-.--.+++.+|-.-+.++-.. +
T Consensus 628 ~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~------------~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~-~ 694 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR------------FSEARDIFSQVREATSDFEDVWLNLAHCYVEQ-G 694 (1018)
T ss_pred HHHHHHHHHHHHhcCcchhhhccchhhhhhhccC------------chHHHHHHHHHHHHHhhCCceeeeHHHHHHHH-H
Confidence 4699999999999999999999999999998865 89999999999987779999999998888766 5
Q ss_pred ChHHHHHHHHHHHHhC--CCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhh
Q 005381 121 SIDNELRLLDKFQKAD--SRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~d--prN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~ 190 (699)
.|..+++.|+.+++.. ..+.+.-+|-+-+.-..+.+ .+..++..+++...|+|++.-++++.++.++..
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~-~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL-QEAKEALLKARHLAPSNTSVKFNLALVLKKLAE 765 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhCCccchHHhHHHHHHHHHHH
Confidence 8999999999999854 34567777777666666666 788899999999999999999999999998864
No 157
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0045 Score=66.56 Aligned_cols=138 Identities=15% Similarity=0.093 Sum_probs=110.4
Q ss_pred CCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005381 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA 135 (699)
Q Consensus 56 P~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~ 135 (699)
|.+.++=.++..|+..++. +.+++..+-.+++.++++..+-+-|+-++... ...+.++..++++|++
T Consensus 166 pac~~a~~lka~cl~~~~~------------~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~-~~~~ka~~hf~qal~l 232 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGD------------YDEAQSEAIDILKLDATNAEALYVRGLCLYYN-DNADKAINHFQQALRL 232 (486)
T ss_pred chhhHHHHhhhhhhhhccc------------chhHHHHHHHHHhcccchhHHHHhcccccccc-cchHHHHHHHhhhhcc
Confidence 6667777778888887754 88999999999999999999999999999865 5789999999999999
Q ss_pred CCCChhh------------hhHHHHHHHhcCCChHHHHHHHHHHHHhccCch----HHHHHHHHHHHHhhhhhccCccch
Q 005381 136 DSRNFHA------------WNYRRFVAASMNRSEEDELKYTEDMICNNFSNY----SAWHNRSLLLSNLLKRKVEGFVSK 199 (699)
Q Consensus 136 dprN~ha------------W~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~----SAW~~R~~ll~~l~~~~~~~~~~~ 199 (699)
||....+ |.-|+--.-+-|.+ ...-++++.+|.++|+|- -.+.+|..+...|++
T Consensus 233 dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y-~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr--------- 302 (486)
T KOG0550|consen 233 DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNY-RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR--------- 302 (486)
T ss_pred ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccch-hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC---------
Confidence 9876654 44444444444566 678888899999999976 335666666666654
Q ss_pred hchHHHHHHHHHHHHHhCCC
Q 005381 200 EKVLPDEYEFVHQAIFTDPD 219 (699)
Q Consensus 200 ~~~~~eeL~~~~~ai~~dP~ 219 (699)
+.++|..+..|+.+||.
T Consensus 303 ---l~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 303 ---LREAISDCNEALKIDSS 319 (486)
T ss_pred ---chhhhhhhhhhhhcCHH
Confidence 79999999999999975
No 158
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.89 E-value=0.011 Score=69.45 Aligned_cols=139 Identities=16% Similarity=0.136 Sum_probs=103.2
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 005381 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (699)
Q Consensus 33 ~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~ 112 (699)
.....++| ++||+.+.++|+.+|++|.||.+-|..+..++. +.+++-+.|-.+.+.+|++.-||.+-+
T Consensus 11 ~al~nk~Y-eealEqskkvLk~dpdNYnA~vFLGvAl~sl~q-----------~le~A~ehYv~AaKldpdnlLAWkGL~ 78 (1238)
T KOG1127|consen 11 DALRNKEY-EEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQ-----------DLEKAAEHYVLAAKLDPDNLLAWKGLG 78 (1238)
T ss_pred HHHhhccH-HHHHHHHHHHHhcCCCcchhhhHHHHHHHhccC-----------CHHHHHHHHHHHHhcChhhhHHHHHHH
Confidence 33456788 999999999999999999999999999998853 378888999999999999999999998
Q ss_pred HHHHhCC--CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhc-CC------------ChHHHHH-HHHHHHHhccCchH
Q 005381 113 WILSKGH--SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM-NR------------SEEDELK-YTEDMICNNFSNYS 176 (699)
Q Consensus 113 w~L~~~~--~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l-~~------------~~e~EL~-~~~~~I~~n~sN~S 176 (699)
-+.++.+ ..+++...+|.+++.+.++-- -.++-.+.+. .. ....|+- +-.+..+.||.-.-
T Consensus 79 nLye~~~dIl~ld~~~~~yq~~~l~le~q~---~nk~~~lcKk~~d~~~~fk~hll~a~eigei~~trq~~se~N~~k~~ 155 (1238)
T KOG1127|consen 79 NLYERYNDILDLDRAAKCYQRAVLILENQS---KNKGEALCKKFDDQYYQFKKHLLVAKEIGEIAVTRQDASEKNPKKFW 155 (1238)
T ss_pred HHHHccchhhhhhHhHHHHHHHHHhhhhhh---hhHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHhchHhhhhhCHHHHH
Confidence 8888743 357788889998887776544 2222222221 11 0122333 33477788888888
Q ss_pred HHHHHHHHHH
Q 005381 177 AWHNRSLLLS 186 (699)
Q Consensus 177 AW~~R~~ll~ 186 (699)
+|.-.+.++.
T Consensus 156 a~~rl~Qi~l 165 (1238)
T KOG1127|consen 156 AFCRLGQIQL 165 (1238)
T ss_pred hhCchHHHHh
Confidence 8877776655
No 159
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.87 E-value=0.015 Score=69.70 Aligned_cols=156 Identities=12% Similarity=-0.007 Sum_probs=111.4
Q ss_pred HhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChH---------
Q 005381 53 ETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSID--------- 123 (699)
Q Consensus 53 ~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~--------- 123 (699)
...|++..+|-.--...... ..++++++.++.++..+|+...+|++-+.+..+.. .++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~------------~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~-~~~~~~lv~~l~ 91 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSE------------NLTDEAKDICEEHLKEHKKSISALYISGILSLSRR-PLNDSNLLNLID 91 (906)
T ss_pred cCCcchHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhc-chhhhhhhhhhh
Confidence 35677777766554444333 34899999999999999999999999999776542 111
Q ss_pred --------HHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccC
Q 005381 124 --------NELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (699)
Q Consensus 124 --------~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~ 195 (699)
..++++...+-..+.|-+|-...+.++.++|.+ ++.++.++++++.||.|..|-++-++.+... .-..+.
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~-~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNEN-KKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred hcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 445555555555777778999999999999998 7899999999999999999999999888765 211100
Q ss_pred --------ccchhchHHHHHHHHHHHHHhCCCCchh
Q 005381 196 --------FVSKEKVLPDEYEFVHQAIFTDPDDQSG 223 (699)
Q Consensus 196 --------~~~~~~~~~eeL~~~~~ai~~dP~d~Sa 223 (699)
.-...+.|.+..+.-.+.++.+|+|-.-
T Consensus 170 ~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~ 205 (906)
T PRK14720 170 TYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDF 205 (906)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchH
Confidence 0011223455556666667777776554
No 160
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.028 Score=62.73 Aligned_cols=167 Identities=15% Similarity=0.105 Sum_probs=114.8
Q ss_pred cHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 005381 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHS 120 (699)
Q Consensus 41 ~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~ 120 (699)
+.+.+.+.-++....|+..-.|.-=+......++ +.++-+++.++...+|+.-.+|-.-+..+... +
T Consensus 294 ~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k------------~seARry~SKat~lD~~fgpaWl~fghsfa~e-~ 360 (611)
T KOG1173|consen 294 SNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGK------------YSEARRYFSKATTLDPTFGPAWLAFGHSFAGE-G 360 (611)
T ss_pred cchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC------------cHHHHHHHHHHhhcCccccHHHHHHhHHhhhc-c
Confidence 4789999999999999999999999988877765 78999999999999999999999888777633 2
Q ss_pred ChHHHHHHHHHHHHh----------------------------------CCCChhhhhHHHHHHHhcCCChHHHHHHHHH
Q 005381 121 SIDNELRLLDKFQKA----------------------------------DSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~----------------------------------dprN~haW~yR~~vl~~l~~~~e~EL~~~~~ 166 (699)
.-+.++.+|.+|-++ .|.+.-.-++-|-|.-+.+.+ .++..++.+
T Consensus 361 EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y-~~A~~~f~~ 439 (611)
T KOG1173|consen 361 EHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEY-PEALKYFQK 439 (611)
T ss_pred hHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhh-HHHHHHHHH
Confidence 334455555555544 444444444444333333333 344445454
Q ss_pred HHHh--ccCchH-----HHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 167 MICN--NFSNYS-----AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 167 ~I~~--n~sN~S-----AW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
++.. ...+.+ -|.+.|.+.+++ ..++++|.++++|+.+.|.|.+...=..++...
T Consensus 440 ~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl------------~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l 501 (611)
T KOG1173|consen 440 ALEVIKSVLNEKIFWEPTLNNLGHAYRKL------------NKYEEAIDYYQKALLLSPKDASTHASIGYIYHL 501 (611)
T ss_pred HHHHhhhccccccchhHHHHhHHHHHHHH------------hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 4421 122222 255555555555 448999999999999999999887755554433
No 161
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.00065 Score=69.18 Aligned_cols=80 Identities=30% Similarity=0.432 Sum_probs=64.3
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCC---CCCcC-CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNEL---RSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L---~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
+.+.+..++++..+-.|++|+.|++|.|.+ ..++. ...+++|++|+|++|+|..+.....+..+.+|..|++.++.
T Consensus 48 ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 48 LSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred hhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 556667777777888889999999999944 44555 66679999999999999877666778888889999999887
Q ss_pred CCCC
Q 005381 614 IGAH 617 (699)
Q Consensus 614 I~~l 617 (699)
.+.+
T Consensus 128 ~~~l 131 (260)
T KOG2739|consen 128 VTNL 131 (260)
T ss_pred cccc
Confidence 7664
No 162
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.79 E-value=0.039 Score=61.49 Aligned_cols=141 Identities=5% Similarity=-0.153 Sum_probs=102.8
Q ss_pred HHHHHHHhCC----CchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHH--HHHHHHHHhCCC
Q 005381 47 LSTKLLETNP----ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAW--HHRKWILSKGHS 120 (699)
Q Consensus 47 ~~~~~L~~nP----~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW--~hR~w~L~~~~~ 120 (699)
....+....| +...++..-...+...+ .++++++..+.+++.+|++.... ..+....... .
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g------------~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~-~ 313 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCD------------DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP-E 313 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC------------ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC-C
Confidence 3334444455 35555555555555443 38999999999999999998653 3333333222 4
Q ss_pred ChHHHHHHHHHHHHhCCCCh--hhhhHHHHHHHhcCCChHHHHHHHH--HHHHhccCchHHHHHHHHHHHHhhhhhccCc
Q 005381 121 SIDNELRLLDKFQKADSRNF--HAWNYRRFVAASMNRSEEDELKYTE--DMICNNFSNYSAWHNRSLLLSNLLKRKVEGF 196 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~dprN~--haW~yR~~vl~~l~~~~e~EL~~~~--~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~ 196 (699)
..+..++.++++++.+|.|. .....-+|+.-+.+.+ +++.++++ .+++.+|++..+. +.+.++..+++
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~-~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~------ 385 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEF-IEAADAFKNVAACKEQLDANDLA-MAADAFDQAGD------ 385 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccH-HHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCC------
Confidence 56789999999999999999 7778889999999998 78899999 6888999998866 66778777755
Q ss_pred cchhchHHHHHHHHHHHH
Q 005381 197 VSKEKVLPDEYEFVHQAI 214 (699)
Q Consensus 197 ~~~~~~~~eeL~~~~~ai 214 (699)
.+++.+++.+++
T Consensus 386 ------~~~A~~~~~~~l 397 (409)
T TIGR00540 386 ------KAEAAAMRQDSL 397 (409)
T ss_pred ------HHHHHHHHHHHH
Confidence 356666666654
No 163
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.75 E-value=0.026 Score=67.80 Aligned_cols=142 Identities=12% Similarity=0.016 Sum_probs=105.1
Q ss_pred HHHHHHHHHh-cCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCc------hhhhhhHHHHHHHHHHHH
Q 005381 26 VLQSQFLHNH-HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDP------DSLKSILDEELRVVESAL 98 (699)
Q Consensus 26 ~~~~~~~~~~-~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~------~~~~~~~~eEL~~~~~~L 98 (699)
....++.... ..+++ ++|++.++..+..+|+...+|.+.+.+..+.....+... -.....+ ..+..+-.++
T Consensus 32 ~a~~~Li~~~~~~~~~-deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i 109 (906)
T PRK14720 32 KELDDLIDAYKSENLT-DEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKI 109 (906)
T ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHH
Confidence 3444444454 56666 899999999999999999999999996655432111000 0000113 4455555566
Q ss_pred HhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 005381 99 RQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNF 172 (699)
Q Consensus 99 ~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~ 172 (699)
...|.+-.|-...+-++.++ +..+++.+.++++|+.||.|..|-++=++.+... .. +++++++.++++...
T Consensus 110 ~~~~~~k~Al~~LA~~Ydk~-g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL-~KA~~m~~KAV~~~i 180 (906)
T PRK14720 110 LLYGENKLALRTLAEAYAKL-NENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DK-EKAITYLKKAIYRFI 180 (906)
T ss_pred HhhhhhhHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hH-HHHHHHHHHHHHHHH
Confidence 66777778999999999988 5899999999999999999999999999998887 33 778888888888643
No 164
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.75 E-value=0.025 Score=59.13 Aligned_cols=93 Identities=12% Similarity=0.026 Sum_probs=69.9
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCC---ChHHHH
Q 005381 36 HNHIYSKEAVELSTKLLETNPEL---YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK---SYGAWH 109 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~---ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPK---sy~aW~ 109 (699)
..+.| ++|+..+...+...|+. ..++.+.+.++...+. +++++..+..++..+|+ .+.+|.
T Consensus 155 ~~~~y-~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~------------~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 155 DKSRQ-DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK------------KDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred hcCCH-HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34666 68888888888888887 3677777777776654 78888888888866555 577777
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCChhh
Q 005381 110 HRKWILSKGHSSIDNELRLLDKFQKADSRNFHA 142 (699)
Q Consensus 110 hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~ha 142 (699)
..+.+.... +.++++.+.++++++.+|...+|
T Consensus 222 klg~~~~~~-g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDK-GDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHCcCCHHH
Confidence 777777765 57888888888888888877665
No 165
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.74 E-value=0.1 Score=58.00 Aligned_cols=159 Identities=14% Similarity=0.008 Sum_probs=109.9
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCC----------
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK---------- 103 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPK---------- 103 (699)
....|++ ++|++.+++++..+|++..+......+....++ ++++++.+..+.+..+.
T Consensus 163 ~l~~g~~-~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd------------w~~a~~~l~~l~k~~~~~~~~~~~l~~ 229 (398)
T PRK10747 163 QLARNEN-HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA------------WSSLLDILPSMAKAHVGDEEHRAMLEQ 229 (398)
T ss_pred HHHCCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh------------HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3456666 799999999999999999888877776665543 55555555555544443
Q ss_pred --------------------------------ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHH
Q 005381 104 --------------------------------SYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAA 151 (699)
Q Consensus 104 --------------------------------sy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~ 151 (699)
+..++..-.-.+... +..+++.+..+++++. +-+.......+.+.
T Consensus 230 ~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~-g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~- 306 (398)
T PRK10747 230 QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIEC-DDHDTAQQIILDGLKR-QYDERLVLLIPRLK- 306 (398)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhc-CCCHHHHHHHhhcc-
Confidence 333333333333333 4677889999999884 33443332222221
Q ss_pred hcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCch
Q 005381 152 SMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS 222 (699)
Q Consensus 152 ~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~S 222 (699)
.+.+ .+.++..+++++.+|.|.......+.+.... +.+.++.+.+..++..+|++..
T Consensus 307 -~~~~-~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~------------~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 307 -TNNP-EQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH------------GEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred -CCCh-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHhcCCCHHH
Confidence 1444 6789999999999999999888888887765 3389999999999999999876
No 166
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.083 Score=57.10 Aligned_cols=146 Identities=14% Similarity=0.056 Sum_probs=104.1
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHH---------------
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFV--------------- 149 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~v--------------- 149 (699)
+.++.+|.+.++++..+|.+.++.--+|-+|.++ ++.++++-.+..+..+-|..-.+ |||.+
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~-~R~~~A~IaFR~Aq~Lap~rL~~--Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIAL-ERHTQAVIAFRTAQMLAPYRLEI--YRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhc-cchHHHHHHHHHHHhcchhhHHH--HHHHHHHHHhhchHHHHHHH
Confidence 6689999999999999999999999999999887 47777766666666666654443 33332
Q ss_pred ----HHhcCC------------------ChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhcc-------------
Q 005381 150 ----AASMNR------------------SEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVE------------- 194 (699)
Q Consensus 150 ----l~~l~~------------------~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~------------- 194 (699)
+..++. -.|++-.|+++.++++|.-.-|-.-..-++..=++.++.
T Consensus 391 An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D 470 (564)
T KOG1174|consen 391 ANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD 470 (564)
T ss_pred HHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc
Confidence 222211 126778889999999998888877777666544433210
Q ss_pred --------CccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 195 --------GFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 195 --------~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
.+......++++++.|..|+.+||+|+.+--=.+-|-..
T Consensus 471 ~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 471 VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 011233458999999999999999999987665555443
No 167
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.69 E-value=0.0095 Score=58.39 Aligned_cols=92 Identities=10% Similarity=0.079 Sum_probs=75.8
Q ss_pred CChHHHHHHHHHHHHhCCCChh-----hhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhcc
Q 005381 120 SSIDNELRLLDKFQKADSRNFH-----AWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVE 194 (699)
Q Consensus 120 ~~~~~EL~~~~k~L~~dprN~h-----aW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~ 194 (699)
+.|+++..-|..+|++-|.-+. ++.+|+-++-+++.+ +..++-|.++|+++|.+.-|.--|..+..++
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~-e~aI~dcsKaiel~pty~kAl~RRAeayek~------ 181 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW-ESAIEDCSKAIELNPTYEKALERRAEAYEKM------ 181 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH-HHHHHHHHhhHhcCchhHHHHHHHHHHHHhh------
Confidence 5677888888888887776654 455666666667766 8899999999999999999999889888776
Q ss_pred CccchhchHHHHHHHHHHHHHhCCCCchhH
Q 005381 195 GFVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (699)
Q Consensus 195 ~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW 224 (699)
+.|+++|+-|++.++.||....+-
T Consensus 182 ------ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 182 ------EKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred ------hhHHHHHHHHHHHHHhCcchHHHH
Confidence 458999999999999999988654
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.66 E-value=0.0059 Score=51.83 Aligned_cols=75 Identities=13% Similarity=0.107 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 87 LDEELRVVESALRQNFK--SYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nPK--sy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
+++++.++++++..+|. +..+|...+.++.+. +.++++++++++ ++.++++..+....+-++-.++.+ +++++.+
T Consensus 5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~-~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y-~eAi~~l 81 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ-GKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKY-EEAIKAL 81 (84)
T ss_dssp HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT-THHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-H-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC-CCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCH-HHHHHHH
Confidence 44555555555554443 233444444444444 344555555555 444444444444444444445544 3344433
No 169
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.64 E-value=0.0078 Score=49.27 Aligned_cols=61 Identities=25% Similarity=0.272 Sum_probs=54.7
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHH
Q 005381 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWH 109 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~ 109 (699)
+.+.+ ++|++.++.++..+|++..+|..++.++...++ +.+++..++.+++.+|.+..+=.
T Consensus 7 ~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~------------~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 7 QQEDY-EEALEVLERALELDPDDPELWLQRARCLFQLGR------------YEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred hCCCH-HHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc------------HHHHHHHHHHHHHHCCCcHHHHH
Confidence 44555 899999999999999999999999999999976 99999999999999998877643
No 170
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.64 E-value=0.0015 Score=79.01 Aligned_cols=81 Identities=28% Similarity=0.341 Sum_probs=59.5
Q ss_pred CeEEccCCCCCcccCCCCCcccCEEEccCCC--CCCCcC--CccccccceeecccCC-CCCCCCCccccccccccccccc
Q 005381 536 MCLQLKNLSLSRLGSFDKLLWVQMLDLSHNE--LRSIEG--LEALQLLSCLNLSNNI-LGSFTALEPIRQLKSLRALNIS 610 (699)
Q Consensus 536 ~~L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~--L~~l~~--l~~L~~L~~L~Ls~N~-l~~l~~~~~l~~l~~L~~L~Ls 610 (699)
+.+.+-+|.+..++.-..++.|+.|-+..|. +..++. |..|+.|.+|||++|. +..+ |..++.|.+|++|+|+
T Consensus 526 rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L--P~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL--PSSIGELVHLRYLDLS 603 (889)
T ss_pred eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC--ChHHhhhhhhhccccc
Confidence 4466677777766655556678888888886 666666 7778888888888764 4444 6777888888888888
Q ss_pred cccCCCCC
Q 005381 611 YNEIGAHS 618 (699)
Q Consensus 611 ~N~I~~lp 618 (699)
+..|..+|
T Consensus 604 ~t~I~~LP 611 (889)
T KOG4658|consen 604 DTGISHLP 611 (889)
T ss_pred CCCccccc
Confidence 88888877
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.55 E-value=0.0068 Score=51.44 Aligned_cols=80 Identities=14% Similarity=0.082 Sum_probs=67.8
Q ss_pred CChHHHHHHHHHHHHhCCC--ChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCcc
Q 005381 120 SSIDNELRLLDKFQKADSR--NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFV 197 (699)
Q Consensus 120 ~~~~~EL~~~~k~L~~dpr--N~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~ 197 (699)
+.+++++.+++++++.+|. +...|.+.+.+.-+.+.+ ++.++++++ .+.++.+..+....+..+..+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y-~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~------- 73 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY-EEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK------- 73 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH-HHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--------
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH-HHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC-------
Confidence 4789999999999999996 467788899999999999 788999888 88999998777777888888855
Q ss_pred chhchHHHHHHHHHHH
Q 005381 198 SKEKVLPDEYEFVHQA 213 (699)
Q Consensus 198 ~~~~~~~eeL~~~~~a 213 (699)
++++++.+.+|
T Consensus 74 -----y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 -----YEEAIKALEKA 84 (84)
T ss_dssp -----HHHHHHHHHHH
T ss_pred -----HHHHHHHHhcC
Confidence 89999988765
No 172
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.55 E-value=0.065 Score=61.26 Aligned_cols=163 Identities=14% Similarity=0.146 Sum_probs=110.7
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 005381 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L 115 (699)
.-|.+ +||...+..+|..||+++.....-..++.--.. .+. ...+.-+.+++..-...|++..+ |+..|
T Consensus 50 kLg~~-~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~---~~~----~~~~~~~~~y~~l~~~yp~s~~~---~rl~L 118 (517)
T PF12569_consen 50 KLGRK-EEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ---LSD----EDVEKLLELYDELAEKYPRSDAP---RRLPL 118 (517)
T ss_pred HcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc---ccc----ccHHHHHHHHHHHHHhCccccch---hHhhc
Confidence 34555 799999999999999998865544443321110 011 23567788999999999997765 55556
Q ss_pred HhCCC--------------------C--------hH--HHHHHHHHHHH-------------------hCCCCh--hhhh
Q 005381 116 SKGHS--------------------S--------ID--NELRLLDKFQK-------------------ADSRNF--HAWN 144 (699)
Q Consensus 116 ~~~~~--------------------~--------~~--~EL~~~~k~L~-------------------~dprN~--haW~ 144 (699)
....+ + |. .-...+..++. ..|.-. .+|+
T Consensus 119 ~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~ 198 (517)
T PF12569_consen 119 DFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLY 198 (517)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHH
Confidence 53321 0 00 00111111111 112222 3447
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCch
Q 005381 145 YRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS 222 (699)
Q Consensus 145 yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~S 222 (699)
|.......+|.+ +++++|++++|+..|.......-++.++.+.|. +++|.+.++.|-.+|+.|--
T Consensus 199 ~lAqhyd~~g~~-~~Al~~Id~aI~htPt~~ely~~KarilKh~G~------------~~~Aa~~~~~Ar~LD~~DRy 263 (517)
T PF12569_consen 199 FLAQHYDYLGDY-EKALEYIDKAIEHTPTLVELYMTKARILKHAGD------------LKEAAEAMDEARELDLADRY 263 (517)
T ss_pred HHHHHHHHhCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhCChhhHH
Confidence 778888888988 689999999999999999999999999999876 78888888888888887743
No 173
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.51 E-value=0.017 Score=66.16 Aligned_cols=117 Identities=14% Similarity=0.257 Sum_probs=96.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHH
Q 005381 84 KSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKY 163 (699)
Q Consensus 84 ~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~ 163 (699)
++.|.+..+.++..+++||=..+.|+.++.+--++ ..++.+.++|.++...+|.|+.||++-.-..-+++.- .++...
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql-ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k-~ra~~~ 575 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL-EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKK-KRAFRK 575 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH-hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhh-HHHHHH
Confidence 46789999999999999999999999998888777 5889999999999999999999999887776666655 567778
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHH
Q 005381 164 TEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAI 214 (699)
Q Consensus 164 ~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai 214 (699)
..++++-|-.|.-.|-+-..+...++. ++++++.+++.+
T Consensus 576 l~EAlKcn~~~w~iWENymlvsvdvge------------~eda~~A~~rll 614 (777)
T KOG1128|consen 576 LKEALKCNYQHWQIWENYMLVSVDVGE------------FEDAIKAYHRLL 614 (777)
T ss_pred HHHHhhcCCCCCeeeechhhhhhhccc------------HHHHHHHHHHHH
Confidence 889999888888888777766655533 678888887755
No 174
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.50 E-value=0.012 Score=48.14 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhh
Q 005381 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHA 142 (699)
Q Consensus 86 ~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~ha 142 (699)
.+++++.+++.++..+|.+..+|..|+.++.+. +.++++++.++++++.+|.+-.+
T Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 10 DYEEALEVLERALELDPDDPELWLQRARCLFQL-GRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh-ccHHHHHHHHHHHHHHCCCcHHH
Confidence 366666666666666666666666666666665 46666666666666666655443
No 175
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.077 Score=57.33 Aligned_cols=161 Identities=13% Similarity=0.165 Sum_probs=113.7
Q ss_pred CCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005381 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (699)
Q Consensus 37 ~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~ 116 (699)
.|.+ .+|...+++++.+||...++----+.+|..-++ +++-=.+...++.+.--...-|.--+-++.
T Consensus 245 ~Gdn-~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~------------~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 245 NGDY-FQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGG------------CEQDSALMDYLFAKVKYTASHWFVHAQLLY 311 (564)
T ss_pred hcCc-hHHHHHHHHHhhCChhhhhhHHHHHHHHHhccC------------HhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence 4555 577888888899999888887777777665543 566566667777666444444544444443
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCc
Q 005381 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF 196 (699)
Q Consensus 117 ~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~ 196 (699)
.- .+++++|.+.+|+++.+|||..|.--+|-++..++++.+..+.| ..++..-|+.-.. |+|.+-.-+-.
T Consensus 312 ~~-K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaF-R~Aq~Lap~rL~~--Y~GL~hsYLA~------ 381 (564)
T KOG1174|consen 312 DE-KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAF-RTAQMLAPYRLEI--YRGLFHSYLAQ------ 381 (564)
T ss_pred hh-hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHH-HHHHhcchhhHHH--HHHHHHHHHhh------
Confidence 22 37889999999999999999999999999999999997666766 8888888877654 55544333322
Q ss_pred cchhchHHHHHHHHHHHHHhCCCCchhH
Q 005381 197 VSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (699)
Q Consensus 197 ~~~~~~~~eeL~~~~~ai~~dP~d~SaW 224 (699)
+...|++-....++.+-|++.-+-
T Consensus 382 ----~~~kEA~~~An~~~~~~~~sA~~L 405 (564)
T KOG1174|consen 382 ----KRFKEANALANWTIRLFQNSARSL 405 (564)
T ss_pred ----chHHHHHHHHHHHHHHhhcchhhh
Confidence 335777777777776666655443
No 176
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.43 E-value=0.0024 Score=75.28 Aligned_cols=156 Identities=21% Similarity=0.238 Sum_probs=96.4
Q ss_pred hcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcc--c-CCCCCcccCEE
Q 005381 484 LYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRL--G-SFDKLLWVQML 560 (699)
Q Consensus 484 ~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l--~-~l~~L~~L~~L 560 (699)
.-++|+.||++....+ . ..+...+. ..+..+++ |.+++-.+..- . ...++++|..|
T Consensus 120 sr~nL~~LdI~G~~~~---s--------~~W~~kig---~~LPsL~s-------L~i~~~~~~~~dF~~lc~sFpNL~sL 178 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELF---S--------NGWPKKIG---TMLPSLRS-------LVISGRQFDNDDFSQLCASFPNLRSL 178 (699)
T ss_pred HHHhhhhcCccccchh---h--------ccHHHHHh---hhCcccce-------EEecCceecchhHHHHhhccCcccee
Confidence 3467888888775522 1 11112222 22355555 44444433311 1 45678899999
Q ss_pred EccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccccCCCCc
Q 005381 561 DLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNH 640 (699)
Q Consensus 561 dLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~ 640 (699)
|+|+-.++.+.+++.|++|+.|.+.+=.+..-..+..+..|++|++||+|..+....+. . .
T Consensus 179 DIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~-i---------i--------- 239 (699)
T KOG3665|consen 179 DISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK-I---------I--------- 239 (699)
T ss_pred ecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchH-H---------H---------
Confidence 99999999998899999999998887777665445567789999999999776655430 0 0
Q ss_pred cceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCcccc
Q 005381 641 GQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKW 692 (699)
Q Consensus 641 l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~ 692 (699)
..|.+ .-..| +|+.||.|++.+.. .+....+..-|+|+.
T Consensus 240 ---------~qYle---c~~~LpeLrfLDcSgTdi~~-~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 240 ---------EQYLE---CGMVLPELRFLDCSGTDINE-EILEELLNSHPNLQQ 279 (699)
T ss_pred ---------HHHHH---hcccCccccEEecCCcchhH-HHHHHHHHhCccHhh
Confidence 01111 23335 89999999998832 233344444555543
No 177
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.26 E-value=0.65 Score=51.58 Aligned_cols=188 Identities=10% Similarity=-0.036 Sum_probs=113.1
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHH-HHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYR-KLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R-~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w 113 (699)
.+.|++ +++.+.+.++.+.+|+...+-..+ ..+....+ .+++++..++++++.+|++..+.....-
T Consensus 129 ~~~g~~-~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g------------~~~~Al~~l~~~~~~~P~~~~al~ll~~ 195 (398)
T PRK10747 129 QQRGDE-ARANQHLERAAELADNDQLPVEITRVRIQLARN------------ENHAARHGVDKLLEVAPRHPEVLRLAEQ 195 (398)
T ss_pred HHCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 556666 799999999999999987554434 44444433 4899999999999999999999888877
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhh---HHHH---HHHhcCCChHHHH-HHHHHHHHhccCchHHHHHHHHHHH
Q 005381 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWN---YRRF---VAASMNRSEEDEL-KYTEDMICNNFSNYSAWHNRSLLLS 186 (699)
Q Consensus 114 ~L~~~~~~~~~EL~~~~k~L~~dprN~haW~---yR~~---vl~~l~~~~e~EL-~~~~~~I~~n~sN~SAW~~R~~ll~ 186 (699)
+..+. ++|+++++.+.++.+..+.+-.... .+.+ +-......+.+.+ ++....-+..|.+..++.-....+.
T Consensus 196 ~~~~~-gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~ 274 (398)
T PRK10747 196 AYIRT-GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLI 274 (398)
T ss_pred HHHHH-HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHH
Confidence 77766 5899999888888877766543222 1111 1111111000111 1111111122223333322222222
Q ss_pred Hhhhhhc----------cCc---------cchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCC
Q 005381 187 NLLKRKV----------EGF---------VSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (699)
Q Consensus 187 ~l~~~~~----------~~~---------~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~ 236 (699)
..+.... ... ....+..+++++.+.+++..+|+|......+..+.-....
T Consensus 275 ~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~ 343 (398)
T PRK10747 275 ECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE 343 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence 2211100 000 0011336889999999999999999999888888766543
No 178
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.17 Score=57.02 Aligned_cols=130 Identities=17% Similarity=0.204 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCC--
Q 005381 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK-- 103 (699)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPK-- 103 (699)
.+...+-...++++| ++|+....++|.+.|+..+|.+.+=.++..+.+ |+++| ..++.++.
T Consensus 14 ~l~t~ln~~~~~~e~-e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~k------------y~~AL----k~ikk~~~~~ 76 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEY-EEAVKTANKILSIVPDDEDAIRCKVVALIQLDK------------YEDAL----KLIKKNGALL 76 (652)
T ss_pred HHHHHHHHhccchHH-HHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhH------------HHHHH----HHHHhcchhh
Confidence 444455555678888 899999999999999999998888777777754 88888 44555552
Q ss_pred ChHHH-HHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHH
Q 005381 104 SYGAW-HHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSA 177 (699)
Q Consensus 104 sy~aW-~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SA 177 (699)
.+... .+|.++..++ ...++++..++ .++.++ --.-.-|+-++-++++| .+.++.|...++.+-.++.+
T Consensus 77 ~~~~~~fEKAYc~Yrl-nk~Dealk~~~-~~~~~~--~~ll~L~AQvlYrl~~y-dealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 77 VINSFFFEKAYCEYRL-NKLDEALKTLK-GLDRLD--DKLLELRAQVLYRLERY-DEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred hcchhhHHHHHHHHHc-ccHHHHHHHHh-cccccc--hHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCCchHHH
Confidence 23333 6899999888 47889999888 333333 33556788888888888 56788777777777666654
No 179
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.14 E-value=0.03 Score=54.30 Aligned_cols=98 Identities=13% Similarity=0.031 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC---
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG--- 118 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~--- 118 (699)
+.|.+.++.....||.+..+++.-+-+|..+... .+..+....+++++.-++.||.+||+...|...-+-++...
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqf--k~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQF--KQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--S-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 4677888899999999999999999999888531 22234557899999999999999999988876666666532
Q ss_pred CC-------ChHHHHHHHHHHHHhCCCChh
Q 005381 119 HS-------SIDNELRLLDKFQKADSRNFH 141 (699)
Q Consensus 119 ~~-------~~~~EL~~~~k~L~~dprN~h 141 (699)
.+ .|+++.+++.++...+|.|-.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 11 134555555555555555443
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.14 E-value=0.09 Score=54.98 Aligned_cols=90 Identities=9% Similarity=-0.035 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC---ChhhhhHHHHHHHhcCCChHH
Q 005381 86 ILDEELRVVESALRQNFKS---YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSR---NFHAWNYRRFVAASMNRSEED 159 (699)
Q Consensus 86 ~~~eEL~~~~~~L~~nPKs---y~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dpr---N~haW~yR~~vl~~l~~~~e~ 159 (699)
.|++++..++.++..+|++ ..+++..+.++... +.+++++..+.++++.+|. ...||...+.+...++.+ .+
T Consensus 158 ~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~-g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~-~~ 235 (263)
T PRK10803 158 RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNK-GKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT-AK 235 (263)
T ss_pred CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH-HH
Confidence 4899999999999999999 47999999998876 6999999999999988776 578888889999889887 68
Q ss_pred HHHHHHHHHHhccCchHH
Q 005381 160 ELKYTEDMICNNFSNYSA 177 (699)
Q Consensus 160 EL~~~~~~I~~n~sN~SA 177 (699)
..+++.+.|+.+|....|
T Consensus 236 A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 236 AKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHCcCCHHH
Confidence 999999999999988765
No 181
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.11 E-value=0.069 Score=56.08 Aligned_cols=167 Identities=9% Similarity=-0.013 Sum_probs=130.5
Q ss_pred cHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 005381 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHS 120 (699)
Q Consensus 41 ~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~ 120 (699)
.+.||..+...|..-|.+.|.---..++.+.++. +++++++|..+++.+|.+..+-.--+--.. ...
T Consensus 272 P~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~------------~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-Y~~ 338 (478)
T KOG1129|consen 272 PERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ------------QEDALQLYKLVLKLHPINVEAIACIAVGYF-YDN 338 (478)
T ss_pred HHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh------------HHHHHHHHHHHHhcCCccceeeeeeeeccc-cCC
Confidence 4789999999999999999998888888888865 899999999999999999887421111111 114
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhc--cC-chHHHHHHHHHHHHhhhhhccCcc
Q 005381 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN--FS-NYSAWHNRSLLLSNLLKRKVEGFV 197 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n--~s-N~SAW~~R~~ll~~l~~~~~~~~~ 197 (699)
..+-++.+|.++|.+-..+..-+.+-+.+.-..+.+ .-.|..+.+++..- |. -...|++.+++.-.++.
T Consensus 339 ~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~-D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD------- 410 (478)
T KOG1129|consen 339 NPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI-DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD------- 410 (478)
T ss_pred ChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch-hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc-------
Confidence 568899999999999999999999888876655655 34666777777753 32 23689999998776654
Q ss_pred chhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 198 SKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 198 ~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
+.-+-.|+.-|+.-||++..+.+-+.-|-.+
T Consensus 411 -----~nlA~rcfrlaL~~d~~h~ealnNLavL~~r 441 (478)
T KOG1129|consen 411 -----FNLAKRCFRLALTSDAQHGEALNNLAVLAAR 441 (478)
T ss_pred -----hHHHHHHHHHHhccCcchHHHHHhHHHHHhh
Confidence 5667789999999999999999987766544
No 182
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.04 E-value=0.14 Score=56.57 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCC
Q 005381 88 DEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS 156 (699)
Q Consensus 88 ~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~ 156 (699)
.+++++..++|+.+|.++..+.--.-.+-+. .+++.|+++..++.+..|.+|.+|.+-.-+.-.+|.+
T Consensus 217 ~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k-~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 217 VEAIRLLNEALKENPQDSELLNLQAEFLLSK-KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDF 284 (395)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence 3556666666666666666665554444333 3556666666666666666666666666666566655
No 183
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.069 Score=57.84 Aligned_cols=85 Identities=18% Similarity=0.056 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHH
Q 005381 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~ 166 (699)
|.+++..|+++|..+|+|.-|-+.|+-++..+ +.|+.|...+.++++++|.|-.+=.--.-+.++...+.+.|-+.+.+
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~-~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLAL-GEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888888888888766 57888888888888888888666444455555555555666777777
Q ss_pred HHHhcc
Q 005381 167 MICNNF 172 (699)
Q Consensus 167 ~I~~n~ 172 (699)
++..-.
T Consensus 352 mF~k~~ 357 (397)
T KOG0543|consen 352 MFAKLA 357 (397)
T ss_pred Hhhccc
Confidence 766544
No 184
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.15 Score=55.34 Aligned_cols=78 Identities=13% Similarity=-0.014 Sum_probs=65.3
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Q 005381 110 HRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLL 189 (699)
Q Consensus 110 hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~ 189 (699)
.-..+..++ ..|.+++..|+++|+++|+|--|-+.|+-++..++.+ +.+...+.++++.+|+|--|=.....+-.++-
T Consensus 262 NlA~c~lKl-~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~-~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 262 NLAACYLKL-KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEY-DLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred HHHHHHHhh-hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 344555566 4889999999999999999999999999999999999 67888889999999999877666665555543
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.98 E-value=0.018 Score=46.38 Aligned_cols=62 Identities=24% Similarity=0.189 Sum_probs=54.4
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 005381 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~h 110 (699)
..|.+ ++|++.+.+++..+|++..+|.....++...++ ++++...+++++..+|++..+|.-
T Consensus 3 ~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDY-DEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ------------YDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHH-HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-------------HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHCcCHHHHHHH
Confidence 45666 799999999999999999999999999998876 999999999999999998666643
No 186
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.91 E-value=0.14 Score=55.63 Aligned_cols=177 Identities=14% Similarity=0.035 Sum_probs=132.0
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w 113 (699)
...+|++ +.|++.....=..+.+-..|--.--..|.-+.. .+.+-++-.+.+.++.++-=|..|-..++-
T Consensus 429 ~lk~~d~-~~aieilkv~~~kdnk~~saaa~nl~~l~flqg---------gk~~~~aqqyad~aln~dryn~~a~~nkgn 498 (840)
T KOG2003|consen 429 LLKNGDI-EGAIEILKVFEKKDNKTASAAANNLCALRFLQG---------GKDFADAQQYADIALNIDRYNAAALTNKGN 498 (840)
T ss_pred HHhccCH-HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhc---------ccchhHHHHHHHHHhcccccCHHHhhcCCc
Confidence 3445555 556655554444444444333222222222211 145778888899999988888888887777
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhc
Q 005381 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKV 193 (699)
Q Consensus 114 ~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~ 193 (699)
+.... +++++++++|..+|.-|..--.|...-+...+.++.. +++|+|+-++-.+=-.|..+..+...+...+..
T Consensus 499 ~~f~n-gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~l-deald~f~klh~il~nn~evl~qianiye~led--- 573 (840)
T KOG2003|consen 499 IAFAN-GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNL-DEALDCFLKLHAILLNNAEVLVQIANIYELLED--- 573 (840)
T ss_pred eeeec-CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC---
Confidence 76643 7999999999999999999999999999999999988 689999888877777788888777777666532
Q ss_pred cCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCc
Q 005381 194 EGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (699)
Q Consensus 194 ~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~ 234 (699)
-.++++.+.++..+-|+|...-.-+.-|.++-
T Consensus 574 ---------~aqaie~~~q~~slip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 574 ---------PAQAIELLMQANSLIPNDPAILSKLADLYDQE 605 (840)
T ss_pred ---------HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc
Confidence 47899999999999999999999999998874
No 187
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.91 E-value=0.051 Score=52.79 Aligned_cols=102 Identities=11% Similarity=0.014 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCC---------hHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhcc
Q 005381 124 NELRLLDKFQKADSRNFHAWNYRRFVAASMNRS---------EEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVE 194 (699)
Q Consensus 124 ~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~---------~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~ 194 (699)
.+.+-++.....||.+..++++-|-++..+... .++.++-++++|.+||..+.|....+..+..+.....
T Consensus 9 ~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~- 87 (186)
T PF06552_consen 9 HARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP- 87 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC-
Confidence 344444444555555555555444444433211 1456666677788888888887777777776655221
Q ss_pred CccchhchHHHHHHHHHHHHHhCCCCchhHHH
Q 005381 195 GFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFY 226 (699)
Q Consensus 195 ~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y 226 (699)
......+.++++.++|++|...+|+++..+.=
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 12234467899999999999999999976654
No 188
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.89 E-value=0.48 Score=48.58 Aligned_cols=168 Identities=14% Similarity=0.064 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCh
Q 005381 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSI 122 (699)
Q Consensus 43 eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~ 122 (699)
.+....-+.-..+|++..+ ......+...+. -.+.+....+++..+||...+-+--+-..-+. +.+
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~------------a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~-g~~ 116 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGD------------ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN-GNF 116 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhccc------------ccchHHHHhhhhccCcccHHHHHHHHHHHHHh-cch
Confidence 4788888889999999998 434444443332 24556777778888999977765444333333 689
Q ss_pred HHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhch
Q 005381 123 DNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKV 202 (699)
Q Consensus 123 ~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~ 202 (699)
.+++..+.++...+|.|..+|+-++.++.+.|+.++....| .++++..|.+.++-++.+..+.--+ .
T Consensus 117 ~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay-~qAl~L~~~~p~~~nNlgms~~L~g------------d 183 (257)
T COG5010 117 GEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAY-RQALELAPNEPSIANNLGMSLLLRG------------D 183 (257)
T ss_pred HHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHH-HHHHHhccCCchhhhhHHHHHHHcC------------C
Confidence 99999999999999999999999999999999996666666 9999999999999999887654332 2
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCCC
Q 005381 203 LPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRV 237 (699)
Q Consensus 203 ~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~~ 237 (699)
++.+-.++..+...-|.|..+=.-+-++.+...+.
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence 68888888888877777888888888877664443
No 189
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.0035 Score=64.89 Aligned_cols=81 Identities=27% Similarity=0.313 Sum_probs=61.7
Q ss_pred EEccCCCCCcc---c-CCCCCcccCEEEccCCCCCC-CcCC-ccccccceeecccCCCCCCCCCcccccccccccccccc
Q 005381 538 LQLKNLSLSRL---G-SFDKLLWVQMLDLSHNELRS-IEGL-EALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISY 611 (699)
Q Consensus 538 L~Ls~n~l~~l---~-~l~~L~~L~~LdLS~N~L~~-l~~l-~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~ 611 (699)
++|.+|.|+.- . -+.+||.|+.|+||+|.+.+ |..+ ..+.+|++|-|.+..+.--..-..+..+|.++.|.+|.
T Consensus 76 lDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 76 LDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred hhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence 89999999853 3 57889999999999999954 4334 36678999999888775432224467788999999999
Q ss_pred ccCCCCC
Q 005381 612 NEIGAHS 618 (699)
Q Consensus 612 N~I~~lp 618 (699)
|.+..+-
T Consensus 156 N~~rq~n 162 (418)
T KOG2982|consen 156 NSLRQLN 162 (418)
T ss_pred chhhhhc
Confidence 9776554
No 190
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.81 E-value=0.6 Score=47.91 Aligned_cols=141 Identities=11% Similarity=-0.018 Sum_probs=113.7
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~ 114 (699)
+..|+- +..+..-.+++..+|+...+-+--+......+ .+.+++..+.++...+|++..+|+-++.+
T Consensus 77 ~~~G~a-~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g------------~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 77 YLRGDA-DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNG------------NFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred Hhcccc-cchHHHHhhhhccCcccHHHHHHHHHHHHHhc------------chHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 334444 45666677778888888888766555555443 48999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhh
Q 005381 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (699)
Q Consensus 115 L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~ 190 (699)
+.+. ++.+.+-.-|.+++++.|++...-++-+..+---|++ ++.-.++..+...-+.|..+=+++..++...+.
T Consensus 144 ldq~-Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~-~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 144 LDQL-GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL-EDAETLLLPAYLSPAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHc-cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH-HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC
Confidence 9998 6999999999999999999999988887776655666 677777777777777799998999888776654
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.78 E-value=0.029 Score=45.11 Aligned_cols=59 Identities=24% Similarity=0.193 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhh
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWN 144 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~ 144 (699)
+.+++++..+++++..+|++..+|.....++.+. +.++++.+.+++++..+|.|...|.
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQ-GQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 4588888888888888888888888888888877 5888888888888888888755443
No 192
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.67 E-value=0.008 Score=61.62 Aligned_cols=120 Identities=22% Similarity=0.130 Sum_probs=70.7
Q ss_pred CCCCCcccCEEEccCCCCCC-CcC-----CccccccceeecccCCCCCCCCC------------cccccccccccccccc
Q 005381 550 SFDKLLWVQMLDLSHNELRS-IEG-----LEALQLLSCLNLSNNILGSFTAL------------EPIRQLKSLRALNISY 611 (699)
Q Consensus 550 ~l~~L~~L~~LdLS~N~L~~-l~~-----l~~L~~L~~L~Ls~N~l~~l~~~------------~~l~~l~~L~~L~Ls~ 611 (699)
.+-+|+.|+..+||.|.++. .|. ++.-+.|.+|.|++|.+..+..- .....-|.|++.....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 57788999999999998843 332 66777899999999987654310 1122347788888899
Q ss_pred ccCCCCCccc-ccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 612 NEIGAHSIDT-TKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 612 N~I~~lp~~~-~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
|++..-|... ...+.+...++.+.+..|.+.--- .-.-+...+..+ +|+.|||..|-+
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpeg-----v~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEG-----VTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcch-----hHHHHHHHHHHhCcceeeeccccch
Confidence 9887765211 112333333344344444442100 000111123334 788888888887
No 193
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.66 E-value=2 Score=40.62 Aligned_cols=164 Identities=24% Similarity=0.200 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHH--hCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH-HHHhC
Q 005381 42 KEAVELSTKLLE--TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW-ILSKG 118 (699)
Q Consensus 42 ~eaL~~~~~~L~--~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w-~L~~~ 118 (699)
.+++......+. ..+....++...+.+...++. +.+++..+..++...+.....+.+... ++...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (291)
T COG0457 76 EEALELLEKALELELLPNLAEALLNLGLLLEALGK------------YEEALELLEKALALDPDPDLAEALLALGALYEL 143 (291)
T ss_pred HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh------------HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHc
Confidence 455555555555 566666666666666555533 667777777777766666666666665 45544
Q ss_pred CCChHHHHHHHHHHHHhCCC---ChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccC-chHHHHHHHHHHHHhhhhhcc
Q 005381 119 HSSIDNELRLLDKFQKADSR---NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS-NYSAWHNRSLLLSNLLKRKVE 194 (699)
Q Consensus 119 ~~~~~~EL~~~~k~L~~dpr---N~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~s-N~SAW~~R~~ll~~l~~~~~~ 194 (699)
+.+++++..+.+++..+|. .......+.......+.+ +..+..+.++++..+. ...++...+......+
T Consensus 144 -~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 216 (291)
T COG0457 144 -GDYEEALELYEKALELDPELNELAEALLALGALLEALGRY-EEALELLEKALKLNPDDDAEALLNLGLLYLKLG----- 216 (291)
T ss_pred -CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCH-HHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc-----
Confidence 4677777777777666652 223333333333333444 5566666777777766 4555555555554432
Q ss_pred CccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005381 195 GFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 195 ~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll 231 (699)
.+++++..+..++...|.....+......+
T Consensus 217 -------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (291)
T COG0457 217 -------KYEEALEYYEKALELDPDNAEALYNLALLL 246 (291)
T ss_pred -------cHHHHHHHHHHHHhhCcccHHHHhhHHHHH
Confidence 246666777777777766444444444433
No 194
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.66 E-value=0.9 Score=43.06 Aligned_cols=152 Identities=26% Similarity=0.228 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHH-HHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHh
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKL-AVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK---SYGAWHHRKWILSK 117 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~-~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPK---sy~aW~hR~w~L~~ 117 (699)
++++..+..++...++....+.+... ++...+. +.+++..+++++..+|. .......+......
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (291)
T COG0457 112 EEALELLEKALALDPDPDLAEALLALGALYELGD------------YEEALELYEKALELDPELNELAEALLALGALLEA 179 (291)
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH
Confidence 78999999999999998777777777 6666654 89999999999998873 44444444444333
Q ss_pred CCCChHHHHHHHHHHHHhCCC-ChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCc
Q 005381 118 GHSSIDNELRLLDKFQKADSR-NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF 196 (699)
Q Consensus 118 ~~~~~~~EL~~~~k~L~~dpr-N~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~ 196 (699)
. +.+++++..+.+++...+. ...++...+......+.+ +..+..+..++...+.....+......+. ..
T Consensus 180 ~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------- 249 (291)
T COG0457 180 L-GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY-EEALEYYEKALELDPDNAEALYNLALLLL-EL------- 249 (291)
T ss_pred h-cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH-HHHHHHHHHHHhhCcccHHHHhhHHHHHH-Hc-------
Confidence 3 5789999999999999999 688999999888888866 68999999999999997777777777766 31
Q ss_pred cchhchHHHHHHHHHHHHHhCCC
Q 005381 197 VSKEKVLPDEYEFVHQAIFTDPD 219 (699)
Q Consensus 197 ~~~~~~~~eeL~~~~~ai~~dP~ 219 (699)
..++++...+.+++..+|.
T Consensus 250 ----~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 250 ----GRYEEALEALEKALELDPD 268 (291)
T ss_pred ----CCHHHHHHHHHHHHHhCcc
Confidence 1368888999999999997
No 195
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.0012 Score=67.71 Aligned_cols=95 Identities=25% Similarity=0.327 Sum_probs=82.4
Q ss_pred HHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCC
Q 005381 516 ESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTAL 595 (699)
Q Consensus 516 ~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~ 595 (699)
-.....|+.+.++++ |++-++.|+.|.-...|+.|++|.||-|+|+++.+|..+++|+.|+|..|.|.++..+
T Consensus 9 V~~raK~sdl~~vkK-------LNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL 81 (388)
T KOG2123|consen 9 VYIRAKCSDLENVKK-------LNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDEL 81 (388)
T ss_pred HHHHHHhhHHHHhhh-------hcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHH
Confidence 334445666777666 8899999999988899999999999999999999999999999999999999998766
Q ss_pred ccccccccccccccccccCCCC
Q 005381 596 EPIRQLKSLRALNISYNEIGAH 617 (699)
Q Consensus 596 ~~l~~l~~L~~L~Ls~N~I~~l 617 (699)
.-+.++++|+.|.|..|+-..-
T Consensus 82 ~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HHHhcCchhhhHhhccCCcccc
Confidence 7788999999999999987553
No 196
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.46 E-value=0.0089 Score=70.62 Aligned_cols=106 Identities=23% Similarity=0.265 Sum_probs=72.7
Q ss_pred CCCcccCEEEccCCCCCC--CcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCC
Q 005381 552 DKLLWVQMLDLSHNELRS--IEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSS 628 (699)
Q Consensus 552 ~~L~~L~~LdLS~N~L~~--l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l 628 (699)
..||+|+.|.+++=.+.. +.. +.++++|..||+|+..++.+ .+++.|.+|++|.+.+=.+...+
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq~L~mrnLe~e~~~---------- 211 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQVLSMRNLEFESYQ---------- 211 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHHHHhccCCCCCchh----------
Confidence 457889999888866622 333 77888999999999988876 67888888998887654443321
Q ss_pred CCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC-CCccchH---HHhhcCCccccccCc
Q 005381 629 PLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI-VNEKFKS---FLIKVLPGLKWLDGE 696 (699)
Q Consensus 629 ~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~~~~~~---~~~~~l~~L~~LD~~ 696 (699)
....+-+| +|+.||+|...- ..+.... .....+|.|+.||..
T Consensus 212 --------------------------~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 212 --------------------------DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred --------------------------hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 01234567 899999998877 2221111 112458999999975
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.44 E-value=0.27 Score=45.02 Aligned_cols=96 Identities=16% Similarity=0.098 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC---hhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccC---chHHHH
Q 005381 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN---FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS---NYSAWH 179 (699)
Q Consensus 106 ~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN---~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~s---N~SAW~ 179 (699)
.+++++.|+.... +..++++.+|.+++...... ..++-..+..+..+|++ ++.+...++.+...|. +-..+.
T Consensus 2 ~~~~~~A~a~d~~-G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~-deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSL-GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRY-DEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCccccHHHHH
Confidence 5789999999987 68999999999999975444 46888889999999999 6788888999999888 777777
Q ss_pred HHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHH
Q 005381 180 NRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (699)
Q Consensus 180 ~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~ 215 (699)
.....+..+++ .+++++.+..++-
T Consensus 80 f~Al~L~~~gr------------~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGR------------PKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCC------------HHHHHHHHHHHHH
Confidence 77777777655 5777777766653
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.43 Score=50.02 Aligned_cols=122 Identities=14% Similarity=0.013 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC--
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH-- 119 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~-- 119 (699)
++.+.-.+.-|..||.+..-|-.-+.+...+++ +..++..|.+++++.|+|..+|---.-++....
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~------------~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~ 206 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGR------------ASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ 206 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcc------------hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence 456677788899999999999999999998876 899999999999999999999988887776432
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchH
Q 005381 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYS 176 (699)
Q Consensus 120 ~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~S 176 (699)
..-.+.-.++++++..||.|..+-.|-++-...-++| .+.......+++..|-|-.
T Consensus 207 ~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~-~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 207 QMTAKARALLRQALALDPANIRALSLLAFAAFEQGDY-AEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred cccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccH-HHHHHHHHHHHhcCCCCCc
Confidence 2235788899999999999999999999998888998 6788888898888776654
No 199
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.18 E-value=1.5 Score=50.40 Aligned_cols=184 Identities=13% Similarity=0.065 Sum_probs=133.6
Q ss_pred CCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccC----------CCCc-----------hhhhhhHHHHHHHHH
Q 005381 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEN----------DSDP-----------DSLKSILDEELRVVE 95 (699)
Q Consensus 37 ~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~----------~~~~-----------~~~~~~~~eEL~~~~ 95 (699)
.|+. ..|..+.+.++..||.+-.+|...-.+.......+ ...| +-.....++++++++
T Consensus 597 agdv-~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 597 AGDV-PAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred cCCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 3444 68999999999999999999986544433221100 0111 123355788888888
Q ss_pred HHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCch
Q 005381 96 SALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (699)
Q Consensus 96 ~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~ 175 (699)
.||+..|.....|...+.+..++ ...+.+-+.|..-++.-|...--|---.-+=++-+.. -.+-...+++.-.||.|.
T Consensus 676 e~lk~fp~f~Kl~lmlGQi~e~~-~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~-~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 676 EALKSFPDFHKLWLMLGQIEEQM-ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL-VRARSILDRARLKNPKNA 753 (913)
T ss_pred HHHHhCCchHHHHHHHhHHHHHH-HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch-hhHHHHHHHHHhcCCCcc
Confidence 88888888888888888888877 4777888888888888888888887655555555544 456667788888999999
Q ss_pred HHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcC
Q 005381 176 SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTV 235 (699)
Q Consensus 176 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~ 235 (699)
--|--.-.+=.++ +..+++-..+.+|+.-.|+.--.|--.-||-....
T Consensus 754 ~lwle~Ir~ElR~------------gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 754 LLWLESIRMELRA------------GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred hhHHHHHHHHHHc------------CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 8886554433333 23567778889999999999999999999986644
No 200
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=95.15 E-value=0.0094 Score=66.54 Aligned_cols=40 Identities=33% Similarity=0.561 Sum_probs=29.9
Q ss_pred CCCCCccEEEecCCCC-----CCccchHHHhhcCCccccccCccC
Q 005381 659 LKGLNLTQFDIVGNAI-----VNEKFKSFLIKVLPGLKWLDGEQL 698 (699)
Q Consensus 659 l~~L~L~~LdLs~N~l-----~~~~~~~~~~~~l~~L~~LD~~~i 698 (699)
++++.|+.|-|.||+| ....+...+...+|+|..|||..|
T Consensus 267 ~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG~ev 311 (585)
T KOG3763|consen 267 LKGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLDGVEV 311 (585)
T ss_pred hcCCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeecCccc
Confidence 4444788999999999 122344566778999999999876
No 201
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.10 E-value=0.0091 Score=72.37 Aligned_cols=75 Identities=29% Similarity=0.361 Sum_probs=62.4
Q ss_pred EEccCCC--CCccc--CCCCCcccCEEEccCC-CCCCCcC-CccccccceeecccCCCCCCCCCcccccccccccccccc
Q 005381 538 LQLKNLS--LSRLG--SFDKLLWVQMLDLSHN-ELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISY 611 (699)
Q Consensus 538 L~Ls~n~--l~~l~--~l~~L~~L~~LdLS~N-~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~ 611 (699)
|-+.+|. +..++ .|..++.|..||||+| .++.+|. ++.|-+|+.|+|++..+..+ |..+++|..|.+||+..
T Consensus 550 Lll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L--P~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 550 LLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL--PSGLGNLKKLIYLNLEV 627 (889)
T ss_pred EEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc--chHHHHHHhhheecccc
Confidence 6677775 55555 4888999999999987 5688998 99999999999999999887 68889999999999987
Q ss_pred ccC
Q 005381 612 NEI 614 (699)
Q Consensus 612 N~I 614 (699)
+.-
T Consensus 628 ~~~ 630 (889)
T KOG4658|consen 628 TGR 630 (889)
T ss_pred ccc
Confidence 764
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.83 Score=47.90 Aligned_cols=124 Identities=9% Similarity=-0.045 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcC--CChHHHHHH
Q 005381 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMN--RSEEDELKY 163 (699)
Q Consensus 86 ~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~--~~~e~EL~~ 163 (699)
..++-+.-.+.-|..||.+..-|..-+-+.-.. ++++.++..|.+++++.|+|...|---+-++-... ....+.-+.
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~-~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMAL-GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 366777888999999999999999888888776 58999999999999999999999886666654442 233567778
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCch
Q 005381 164 TEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS 222 (699)
Q Consensus 164 ~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~S 222 (699)
.++++..||.|..+-.|.++-...- ..|.+++......+...|.|..
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~------------g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQ------------GDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHc------------ccHHHHHHHHHHHHhcCCCCCc
Confidence 8999999999999988888766544 3389999999999888877654
No 203
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.85 E-value=0.29 Score=56.57 Aligned_cols=118 Identities=16% Similarity=0.209 Sum_probs=102.7
Q ss_pred CCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005381 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (699)
Q Consensus 37 ~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~ 116 (699)
+++| +++.+..+..+++||=....|+.+|-+-.++++ ++.+...|..|+...|.+..+|+.-.-..-
T Consensus 498 ~~~f-s~~~~hle~sl~~nplq~~~wf~~G~~ALqlek------------~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 498 NKDF-SEADKHLERSLEINPLQLGTWFGLGCAALQLEK------------EQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred chhH-HHHHHHHHHHhhcCccchhHHHhccHHHHHHhh------------hHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 4666 799999999999999999999999999888865 899999999999999999999999877666
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHH
Q 005381 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMIC 169 (699)
Q Consensus 117 ~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~ 169 (699)
++ ..-.++......+++-+-.|...|-+=.-+....|.+ ++.++.+.+...
T Consensus 565 ~~-~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~-eda~~A~~rll~ 615 (777)
T KOG1128|consen 565 RL-KKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEF-EDAIKAYHRLLD 615 (777)
T ss_pred HH-hhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccH-HHHHHHHHHHHH
Confidence 65 3567899999999999999999999888888888887 678877666544
No 204
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.73 E-value=0.045 Score=60.38 Aligned_cols=88 Identities=14% Similarity=0.029 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHH
Q 005381 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~ 166 (699)
|..++.++.+||+.+|.+...|..|....-+. ..+..++.-+.++++.||...-|+..|+-+...++.+ .+++.-+.+
T Consensus 20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~-e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~-~~A~~~l~~ 97 (476)
T KOG0376|consen 20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKV-ESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF-KKALLDLEK 97 (476)
T ss_pred HHHHHHHHHHHHhcCCcceeeechhhhhheee-chhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH-HHHHHHHHH
Confidence 55555555555555555555555554333333 3444555555555555555555554444444444444 233333344
Q ss_pred HHHhccCchH
Q 005381 167 MICNNFSNYS 176 (699)
Q Consensus 167 ~I~~n~sN~S 176 (699)
+....|++..
T Consensus 98 ~~~l~Pnd~~ 107 (476)
T KOG0376|consen 98 VKKLAPNDPD 107 (476)
T ss_pred hhhcCcCcHH
Confidence 4444444433
No 205
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.66 E-value=0.027 Score=39.30 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=14.6
Q ss_pred HHHHHHhCCCChhhhhHHHHHHHhcCCC
Q 005381 129 LDKFQKADSRNFHAWNYRRFVAASMNRS 156 (699)
Q Consensus 129 ~~k~L~~dprN~haW~yR~~vl~~l~~~ 156 (699)
|.++|+++|+|..+|+..++++...|.+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~ 29 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDY 29 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCH
Confidence 4455555555555555555555555444
No 206
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.60 E-value=0.069 Score=36.73 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 005381 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN 139 (699)
Q Consensus 106 ~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN 139 (699)
.+|.+++.+.... +.+++++.+|++++++||.|
T Consensus 2 ~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQL-GDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHh-CCchHHHHHHHHHHHHCcCC
Confidence 4788888888877 58888888888888888864
No 207
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.38 E-value=0.58 Score=46.81 Aligned_cols=143 Identities=13% Similarity=0.000 Sum_probs=99.6
Q ss_pred HHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhh
Q 005381 63 NYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHA 142 (699)
Q Consensus 63 n~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~ha 142 (699)
.-||....+++- ..=+-.-+.++|.++||-..++++-+.-+... +.++-+++.++..+++||.+-.|
T Consensus 69 fERGvlYDSlGL------------~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a-~~fdaa~eaFds~~ELDp~y~Ya 135 (297)
T COG4785 69 FERGVLYDSLGL------------RALARNDFSQALAIRPDMPEVFNYLGIYLTQA-GNFDAAYEAFDSVLELDPTYNYA 135 (297)
T ss_pred HHhcchhhhhhH------------HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhc-ccchHHHHHhhhHhccCCcchHH
Confidence 446666666653 23333457789999999999999999988866 69999999999999999999999
Q ss_pred hhHHHHHHHhcCCChHHHHHHHHHHHHhccCch--HHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC
Q 005381 143 WNYRRFVAASMNRSEEDELKYTEDMICNNFSNY--SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220 (699)
Q Consensus 143 W~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~--SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d 220 (699)
--+|+..+---|++. =+.+-+.+.-..||+|. +-|-|.--. ++-+ +++-....+-.....++
T Consensus 136 ~lNRgi~~YY~gR~~-LAq~d~~~fYQ~D~~DPfR~LWLYl~E~--k~dP-------------~~A~tnL~qR~~~~d~e 199 (297)
T COG4785 136 HLNRGIALYYGGRYK-LAQDDLLAFYQDDPNDPFRSLWLYLNEQ--KLDP-------------KQAKTNLKQRAEKSDKE 199 (297)
T ss_pred HhccceeeeecCchH-hhHHHHHHHHhcCCCChHHHHHHHHHHh--hCCH-------------HHHHHHHHHHHHhccHh
Confidence 999998888888883 34444566677788887 666664321 1111 22222222222334456
Q ss_pred chhHHHHHHHHcCc
Q 005381 221 QSGWFYHLWLLDQT 234 (699)
Q Consensus 221 ~SaW~Y~~~Ll~~~ 234 (699)
+-+|+--.+.|++.
T Consensus 200 ~WG~~iV~~yLgki 213 (297)
T COG4785 200 QWGWNIVEFYLGKI 213 (297)
T ss_pred hhhHHHHHHHHhhc
Confidence 77888777777764
No 208
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=94.37 E-value=0.68 Score=51.22 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
+.+++++.+++++.+.+|. ++..-.-++... ..-.+++.+.+++++.+|+++..+....-.+-..+++ +.+++..
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~-~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~-~lAL~iA 257 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLM-NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY-ELALEIA 257 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhc-CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Confidence 4589999999999999986 333333333223 3556899999999999999999999887777777877 7899999
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHH
Q 005381 165 EDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVH 211 (699)
Q Consensus 165 ~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~ 211 (699)
+++++..|++..+|++...+...+++ +++||-...
T Consensus 258 k~av~lsP~~f~~W~~La~~Yi~~~d------------~e~ALlaLN 292 (395)
T PF09295_consen 258 KKAVELSPSEFETWYQLAECYIQLGD------------FENALLALN 292 (395)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhcCC------------HHHHHHHHh
Confidence 99999999999999999988887754 677774433
No 209
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.30 E-value=0.05 Score=37.98 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=28.8
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHH
Q 005381 93 VVESALRQNFKSYGAWHHRKWILSKGHSSIDNEL 126 (699)
Q Consensus 93 ~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL 126 (699)
+++++|+.+|+++.+|+..++++... +++++++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~-g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQ-GDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHC-cCHHhhc
Confidence 47899999999999999999999977 5777664
No 210
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.28 E-value=2.3 Score=39.83 Aligned_cols=117 Identities=15% Similarity=0.014 Sum_probs=83.7
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCc-h--HHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC---hHHHH
Q 005381 36 HNHIYSKEAVELSTKLLETNPEL-Y--TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS---YGAWH 109 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~-y--taWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs---y~aW~ 109 (699)
..+.. ..+-..++.++..+|+. | .++.....+....+ .++++...++.++...|.. ..++.
T Consensus 23 ~~~~~-~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g------------~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 23 QAGDP-AKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG------------DYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HCCCH-HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 45555 56677899999999999 3 44444555554443 4899999999999987655 33555
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHH
Q 005381 110 HRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMI 168 (699)
Q Consensus 110 hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I 168 (699)
....++-.. +.+++++..++. +...+-...++..+|-++...|.+ ++..+.+.++|
T Consensus 90 ~LA~~~~~~-~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~-~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQ-GQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDY-DEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHc-CCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCH-HHHHHHHHHhC
Confidence 556666555 689999999976 334444556788889999999988 67777777653
No 211
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.22 E-value=0.024 Score=58.25 Aligned_cols=226 Identities=14% Similarity=0.037 Sum_probs=122.2
Q ss_pred CCCccccccccccccCccchhhhhHHHHHHHHHHHHhhhh-ccccccccccHHHHHhhcccCCCCCCCcCCCcHHHHHhc
Q 005381 407 SSPISSLYQLSIKNDNELTDFEWRAATIAKEIDHFRELLS-LINCKIGKLTLARLLMAHDAMMCPPANKISHSEEVLELY 485 (699)
Q Consensus 407 ~~~l~~~~~lsi~~~~~~~~~~~~~~~L~~el~~~~~L~~-~p~nk~~~Ltl~~ll~~~~~l~~~~~~~~~~~~~~l~~l 485 (699)
+..+.+. +||=.|--++ ..+.|-.-|.+.++|.. .-...++...--.+..+ ....-.++-.|
T Consensus 29 ~d~~~ev-dLSGNtigtE-----A~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~-----------L~~Ll~aLlkc 91 (388)
T COG5238 29 MDELVEV-DLSGNTIGTE-----AMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSN-----------LVMLLKALLKC 91 (388)
T ss_pred hcceeEE-eccCCcccHH-----HHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHH-----------HHHHHHHHhcC
Confidence 3455555 5665444444 44555555666666664 22222222111111111 23334566788
Q ss_pred ccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCccc--C-------------
Q 005381 486 NDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLG--S------------- 550 (699)
Q Consensus 486 ~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~--~------------- 550 (699)
++|..+|+|.|.+-...+ +.+...++.-. +|.+ |.|++|.+-.+. .
T Consensus 92 p~l~~v~LSDNAfg~~~~------------e~L~d~is~~t-----~l~H--L~l~NnGlGp~aG~rigkal~~la~nKK 152 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFP------------EELGDLISSST-----DLVH--LKLNNNGLGPIAGGRIGKALFHLAYNKK 152 (388)
T ss_pred CcceeeeccccccCcccc------------hHHHHHHhcCC-----Ccee--EEeecCCCCccchhHHHHHHHHHHHHhh
Confidence 999999999998432221 11222222222 2333 999999987654 1
Q ss_pred CCCCcccCEEEccCCCCCCCcC------CccccccceeecccCCCCCC--CC--CccccccccccccccccccCCCCCcc
Q 005381 551 FDKLLWVQMLDLSHNELRSIEG------LEALQLLSCLNLSNNILGSF--TA--LEPIRQLKSLRALNISYNEIGAHSID 620 (699)
Q Consensus 551 l~~L~~L~~LdLS~N~L~~l~~------l~~L~~L~~L~Ls~N~l~~l--~~--~~~l~~l~~L~~L~Ls~N~I~~lp~~ 620 (699)
...-|.|+..+...|++..-+. |..-.+|.++-+..|.|..- .. ...+..+.+|++|||..|-++.....
T Consensus 153 aa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~ 232 (388)
T COG5238 153 AADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR 232 (388)
T ss_pred hccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH
Confidence 2344789999999999965543 44445789999999987531 11 12344578999999999988765310
Q ss_pred -cccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC---CccEEEecCCCC
Q 005381 621 -TTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL---NLTQFDIVGNAI 674 (699)
Q Consensus 621 -~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L---~L~~LdLs~N~l 674 (699)
....++..+++.-+.+....++.. +. -.....|... +|..|-..+|.+
T Consensus 233 ~La~al~~W~~lrEL~lnDClls~~---G~---~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCLLSNE---GV---KSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HHHHHhcccchhhhccccchhhccc---cH---HHHHHHhhhhcCCCccccccchhhh
Confidence 112234444433222222222110 11 1112233333 778888888877
No 212
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.21 E-value=2 Score=47.16 Aligned_cols=170 Identities=12% Similarity=0.053 Sum_probs=107.0
Q ss_pred CCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005381 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (699)
Q Consensus 37 ~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~ 116 (699)
+|++ +.|++.|..+|.-+..+..|.+.-+.....++. ++++|+|+-++-.+=-.+.++.+.-.-+.+
T Consensus 503 ngd~-dka~~~ykeal~ndasc~ealfniglt~e~~~~------------ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 503 NGDL-DKAAEFYKEALNNDASCTEALFNIGLTAEALGN------------LDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred cCcH-HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcC------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4666 688999999999999998888887777776654 777777776665555556666666655555
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcC---------------------------------CChHHHHHH
Q 005381 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMN---------------------------------RSEEDELKY 163 (699)
Q Consensus 117 ~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~---------------------------------~~~e~EL~~ 163 (699)
-+ .....+++++-++-.+-|.+.....--+-+..+-| .++|+.+.|
T Consensus 570 ~l-ed~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 570 LL-EDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred Hh-hCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 44 34455666666655555555444333333322222 123667777
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHc
Q 005381 164 TEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (699)
Q Consensus 164 ~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~ 232 (699)
++++--+.| |.+-|.--- ..-++ ....|+++++.|+..-...|+|-..--|+-.+-+
T Consensus 649 ~ekaaliqp-~~~kwqlmi---asc~r--------rsgnyqka~d~yk~~hrkfpedldclkflvri~~ 705 (840)
T KOG2003|consen 649 FEKAALIQP-NQSKWQLMI---ASCFR--------RSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHHhcCc-cHHHHHHHH---HHHHH--------hcccHHHHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence 776666655 455563221 11111 1234899999999999999999888766555443
No 213
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.0032 Score=65.23 Aligned_cols=83 Identities=27% Similarity=0.251 Sum_probs=50.7
Q ss_pred ccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCc-cc-CCCCCcccCEEEcc
Q 005381 486 NDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSR-LG-SFDKLLWVQMLDLS 563 (699)
Q Consensus 486 ~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~-l~-~l~~L~~L~~LdLS 563 (699)
..|+.+|+|+..+ .-. .+..+...|.++++ |.|.++.+.. |. .+..-.+|..||||
T Consensus 185 sRlq~lDLS~s~i----------t~s--tl~~iLs~C~kLk~----------lSlEg~~LdD~I~~~iAkN~~L~~lnls 242 (419)
T KOG2120|consen 185 SRLQHLDLSNSVI----------TVS--TLHGILSQCSKLKN----------LSLEGLRLDDPIVNTIAKNSNLVRLNLS 242 (419)
T ss_pred hhhHHhhcchhhe----------eHH--HHHHHHHHHHhhhh----------ccccccccCcHHHHHHhccccceeeccc
Confidence 4588888887651 111 13445566765554 6666666662 22 56666777788877
Q ss_pred C-CCCCCCcC---CccccccceeecccCCCC
Q 005381 564 H-NELRSIEG---LEALQLLSCLNLSNNILG 590 (699)
Q Consensus 564 ~-N~L~~l~~---l~~L~~L~~L~Ls~N~l~ 590 (699)
+ |.+++... +..+..|..|+|+.+.+.
T Consensus 243 m~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 243 MCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred cccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 6 34554433 777777777888777654
No 214
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.12 E-value=0.051 Score=57.52 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHh
Q 005381 21 AEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100 (699)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~ 100 (699)
.++-.+...+..+....|++ ++|++.+..+|.+||....+.-.|.-++..+.+ ...|++-|+.++.+
T Consensus 111 ~eqa~e~k~~A~eAln~G~~-~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k------------p~~airD~d~A~ei 177 (377)
T KOG1308|consen 111 MDQANDKKVQASEALNDGEF-DTAIELFTSAIELNPPLAILYAKRASVFLKLKK------------PNAAIRDCDFAIEI 177 (377)
T ss_pred HHHHHHHHHHHHHHhcCcch-hhhhcccccccccCCchhhhcccccceeeeccC------------Cchhhhhhhhhhcc
Confidence 33333445555666677887 799999999999999999999999999888865 57888999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 005381 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADS 137 (699)
Q Consensus 101 nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dp 137 (699)
||.+..-+-.|+..=.-+ +.|++|-..+..++++|-
T Consensus 178 n~Dsa~~ykfrg~A~rll-g~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 178 NPDSAKGYKFRGYAERLL-GNWEEAAHDLALACKLDY 213 (377)
T ss_pred CcccccccchhhHHHHHh-hchHHHHHHHHHHHhccc
Confidence 999998888887766544 678888888888887663
No 215
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.77 E-value=1.1 Score=41.40 Aligned_cols=106 Identities=19% Similarity=0.125 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHH
Q 005381 19 AKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESAL 98 (699)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L 98 (699)
..++..+++.-+..+.-..|+. ++||+.+.++|.+.|+...++|.|...+.--++ .+++|+-+++++
T Consensus 38 ~~~e~S~~LEl~~valaE~g~L-d~AlE~F~qal~l~P~raSayNNRAQa~RLq~~------------~e~ALdDLn~Al 104 (175)
T KOG4555|consen 38 QAIKASRELELKAIALAEAGDL-DGALELFGQALCLAPERASAYNNRAQALRLQGD------------DEEALDDLNKAL 104 (175)
T ss_pred HHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHhcccchHhhccHHHHHHHcCC------------hHHHHHHHHHHH
Confidence 3455555665555666678888 699999999999999999999999887754433 577888888888
Q ss_pred Hh-CCCC---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 005381 99 RQ-NFKS---YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (699)
Q Consensus 99 ~~-nPKs---y~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dpr 138 (699)
+. .|+- .+++..|+-+.... ++-+.+-.-++.+.++-.+
T Consensus 105 eLag~~trtacqa~vQRg~lyRl~-g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 105 ELAGDQTRTACQAFVQRGLLYRLL-GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HhcCccchHHHHHHHHHHHHHHHh-CchHHHHHhHHHHHHhCCH
Confidence 63 3442 35677777777654 5666666666666665543
No 216
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.69 E-value=0.18 Score=34.39 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 005381 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN 139 (699)
Q Consensus 106 ~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN 139 (699)
.+|++.+.++.+. +.+++++++++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~-~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQL-GNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHCcCC
Confidence 5788888888877 58888999999999888876
No 217
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.33 E-value=0.83 Score=45.77 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=67.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHH
Q 005381 47 LSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNEL 126 (699)
Q Consensus 47 ~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL 126 (699)
-++++|.++|+-..++||-|..+..-+. |+.+++.++.+++.+|.+--|--.|+..+-.. +++.-+.
T Consensus 87 DftQaLai~P~m~~vfNyLG~Yl~~a~~------------fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~-gR~~LAq 153 (297)
T COG4785 87 DFSQALAIRPDMPEVFNYLGIYLTQAGN------------FDAAYEAFDSVLELDPTYNYAHLNRGIALYYG-GRYKLAQ 153 (297)
T ss_pred hhhhhhhcCCCcHHHHHHHHHHHHhccc------------chHHHHHhhhHhccCCcchHHHhccceeeeec-CchHhhH
Confidence 4678999999999999999998876543 99999999999999999988888888877755 5777777
Q ss_pred HHHHHHHHhCCCCh
Q 005381 127 RLLDKFQKADSRNF 140 (699)
Q Consensus 127 ~~~~k~L~~dprN~ 140 (699)
+-+-+.-..||++.
T Consensus 154 ~d~~~fYQ~D~~DP 167 (297)
T COG4785 154 DDLLAFYQDDPNDP 167 (297)
T ss_pred HHHHHHHhcCCCCh
Confidence 77777777777775
No 218
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.034 Score=57.84 Aligned_cols=165 Identities=15% Similarity=0.107 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHhhhh--ccccccccccHHHHHhhcccCCC-CCCCcCCCcH----HHHHhcccccccCCCCCccccch
Q 005381 430 RAATIAKEIDHFRELLS--LINCKIGKLTLARLLMAHDAMMC-PPANKISHSE----EVLELYNDLMRLDPTHVQYYKDQ 502 (699)
Q Consensus 430 ~~~~L~~el~~~~~L~~--~p~nk~~~Ltl~~ll~~~~~l~~-~~~~~~~~~~----~~l~~l~~L~~LDls~n~~~~~l 502 (699)
-...|..-+..|++|.. ..++.....-..-+-.+. .+.. .-..-.|+.+ -.+..++.|..|+++.+..+.+.
T Consensus 198 t~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~-~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~ 276 (419)
T KOG2120|consen 198 TVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNS-NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK 276 (419)
T ss_pred eHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccc-cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh
Confidence 45788888999998876 333322221111111110 0000 0011123332 24567778888888877754443
Q ss_pred hhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCCcccCEEEccCCC-CCC--CcCCcccccc
Q 005381 503 HSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKLLWVQMLDLSHNE-LRS--IEGLEALQLL 579 (699)
Q Consensus 503 ~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~-L~~--l~~l~~L~~L 579 (699)
....+..+. .++..|||++..-+|..+.+.. -...+++|.+||||.|. |+. +..|.+++.|
T Consensus 277 -Vtv~V~his-------------e~l~~LNlsG~rrnl~~sh~~t--L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 277 -VTVAVAHIS-------------ETLTQLNLSGYRRNLQKSHLST--LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred -hhHHHhhhc-------------hhhhhhhhhhhHhhhhhhHHHH--HHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 111111111 2344444444222232222222 34578999999999874 433 1127888999
Q ss_pred ceeecccCCCCCCCCCcccccccccccccccc
Q 005381 580 SCLNLSNNILGSFTALEPIRQLKSLRALNISY 611 (699)
Q Consensus 580 ~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~ 611 (699)
++|.|+.+..-.-...-.+...|+|.+|++-+
T Consensus 341 ~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 341 QHLSLSRCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred eeeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence 99999988732211123466778899888753
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=93.15 E-value=1.5 Score=42.32 Aligned_cols=95 Identities=8% Similarity=-0.032 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHH
Q 005381 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~ 166 (699)
++++..++.-+...+|-++.-|.--+-+.+.. ..|++++.+|..+..+++.|+..-.|-+.+.-.++.. +.+.+++..
T Consensus 53 ~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~-k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~-~~A~~~f~~ 130 (165)
T PRK15331 53 LDEAETFFRFLCIYDFYNPDYTMGLAAVCQLK-KQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA-AKARQCFEL 130 (165)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH-HHHHHHHHH
Confidence 88889999988899999988888888888766 5889999999999999999999988889998888887 677888788
Q ss_pred HHHhccCchHHHHHHHHHH
Q 005381 167 MICNNFSNYSAWHNRSLLL 185 (699)
Q Consensus 167 ~I~~n~sN~SAW~~R~~ll 185 (699)
+|+ +|. +..-..|...+
T Consensus 131 a~~-~~~-~~~l~~~A~~~ 147 (165)
T PRK15331 131 VNE-RTE-DESLRAKALVY 147 (165)
T ss_pred HHh-Ccc-hHHHHHHHHHH
Confidence 877 344 44444444433
No 220
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.06 E-value=2.8 Score=38.38 Aligned_cols=96 Identities=15% Similarity=0.101 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 005381 60 TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS---YGAWHHRKWILSKGHSSIDNELRLLDKFQKAD 136 (699)
Q Consensus 60 taWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs---y~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~d 136 (699)
.+++.+.++...+++ .++++.+|++++..-... ..++...+..+..+ +++++++..+++.+...
T Consensus 2 ~~~~~~A~a~d~~G~------------~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L-G~~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 2 RALYELAWAHDSLGR------------EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL-GRYDEALALLEEALEEF 68 (120)
T ss_pred chHHHHHHHHHhcCC------------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 367788888888876 789999999999865444 56788888888877 79999999999999998
Q ss_pred CC---ChhhhhHHHHHHHhcCCChHHHHHHHHHHHH
Q 005381 137 SR---NFHAWNYRRFVAASMNRSEEDELKYTEDMIC 169 (699)
Q Consensus 137 pr---N~haW~yR~~vl~~l~~~~e~EL~~~~~~I~ 169 (699)
|. +-..+.....++...|++ ++.++.+-.++.
T Consensus 69 p~~~~~~~l~~f~Al~L~~~gr~-~eAl~~~l~~la 103 (120)
T PF12688_consen 69 PDDELNAALRVFLALALYNLGRP-KEALEWLLEALA 103 (120)
T ss_pred CCccccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHH
Confidence 88 777777778888889998 567776665554
No 221
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.91 E-value=0.2 Score=34.32 Aligned_cols=33 Identities=18% Similarity=0.060 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC
Q 005381 60 TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (699)
Q Consensus 60 taWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs 104 (699)
.+|..++.+...+++ +++++..++++|+++|++
T Consensus 2 ~~~~~~g~~~~~~~~------------~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGD------------YEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCC------------chHHHHHHHHHHHHCcCC
Confidence 589999999998865 999999999999999974
No 222
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.69 E-value=0.24 Score=33.68 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC
Q 005381 176 SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220 (699)
Q Consensus 176 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d 220 (699)
.+|++++.+....++ ++++++++++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~------------~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGN------------YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCC------------HHHHHHHHHHHHHHCcCC
Confidence 478899999888755 899999999999999986
No 223
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.49 E-value=1.3 Score=50.18 Aligned_cols=121 Identities=14% Similarity=0.112 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
..|++++..++++|.+.|+...|.+-+--.+-+. +.|+++|.+.++-......|..- ..|.+|.-+++.. ++.+...
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~-~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yrlnk~-Dealk~~ 102 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQL-DKYEDALKLIKKNGALLVINSFF-FEKAYCEYRLNKL-DEALKTL 102 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhh-hHHHHHHHHHHhcchhhhcchhh-HHHHHHHHHcccH-HHHHHHH
Confidence 4599999999999999999999985555555455 68999998877755444333332 7899999999987 4566665
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchh
Q 005381 165 EDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSG 223 (699)
Q Consensus 165 ~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~Sa 223 (699)
+ ..++.+--.-+-|+.++.++++ |+++++.|...+.-+-+|+..
T Consensus 103 ~---~~~~~~~~ll~L~AQvlYrl~~------------ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 103 K---GLDRLDDKLLELRAQVLYRLER------------YDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred h---cccccchHHHHHHHHHHHHHhh------------HHHHHHHHHHHHhcCCchHHH
Confidence 5 4556666678888888888855 899999999888777766654
No 224
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.45 E-value=0.64 Score=49.35 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=53.2
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 005381 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L 115 (699)
.+|.| +||++||.+.+...|-+.-..-.|.....++.+ +..+=.-|+.++..|-....|+..|+-.=
T Consensus 109 KQgKy-~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~------------FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 109 KQGKY-EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS------------FAQAEEDCEAAIALDKLYVKAYSRRMQAR 175 (536)
T ss_pred hccch-hHHHHHhhhhhccCCCCccchhhHHHHHHHHHH------------HHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 34555 577777777777777665555556655555533 33444445556665555555555555444
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChh
Q 005381 116 SKGHSSIDNELRLLDKFQKADSRNFH 141 (699)
Q Consensus 116 ~~~~~~~~~EL~~~~k~L~~dprN~h 141 (699)
..+ +...++-+-|+.+|++.|++..
T Consensus 176 ~~L-g~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 176 ESL-GNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHH-hhHHHHHHhHHHHHhhCcccHH
Confidence 433 3556666677777777776543
No 225
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.12 E-value=0.058 Score=33.71 Aligned_cols=16 Identities=50% Similarity=0.654 Sum_probs=9.0
Q ss_pred cCEEEccCCCCCCCcC
Q 005381 557 VQMLDLSHNELRSIEG 572 (699)
Q Consensus 557 L~~LdLS~N~L~~l~~ 572 (699)
|++|||++|.|+.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 4555555555555554
No 226
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.12 E-value=0.54 Score=49.88 Aligned_cols=101 Identities=11% Similarity=-0.041 Sum_probs=79.9
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhh
Q 005381 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (699)
Q Consensus 111 R~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~ 190 (699)
||--..+. +.|++++.||.+.+..+|-|.-...+|....-+++++...|-+| +.+|..|-+..-|+.-|+..=..|+.
T Consensus 103 ~GN~yFKQ-gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC-~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQ-GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDC-EAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhc-cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhH-HHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 44444333 57999999999999999999988889988887777775566655 88899999888999988887776644
Q ss_pred hhccCccchhchHHHHHHHHHHHHHhCCCCchhHH
Q 005381 191 RKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (699)
Q Consensus 191 ~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~ 225 (699)
+.|+-+-+..++.+.|+....--
T Consensus 181 ------------~~EAKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 181 ------------NMEAKKDCETVLALEPKNIELKK 203 (536)
T ss_pred ------------HHHHHHhHHHHHhhCcccHHHHH
Confidence 67888888889999999766543
No 227
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.91 E-value=0.46 Score=52.56 Aligned_cols=65 Identities=18% Similarity=0.256 Sum_probs=45.6
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccC-CCCCCCcC-CccccccceeecccC-CCCCCCCCccccccccccccccccccC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSH-NELRSIEG-LEALQLLSCLNLSNN-ILGSFTALEPIRQLKSLRALNISYNEI 614 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~-N~L~~l~~-l~~L~~L~~L~Ls~N-~l~~l~~~~~l~~l~~L~~L~Ls~N~I 614 (699)
|+++++.|+.+|. -..+|+.|.+++ +.++.+|. + ..+|+.|++++| .+..+ | .+|+.|+++.|.+
T Consensus 57 L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL--P------~sLe~L~L~~n~~ 124 (426)
T PRK15386 57 LYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL--P------ESVRSLEIKGSAT 124 (426)
T ss_pred EEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc--c------cccceEEeCCCCC
Confidence 8889888888773 234699999987 66777776 4 257889999888 55544 2 2466666766654
No 228
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.61 E-value=0.013 Score=58.96 Aligned_cols=67 Identities=22% Similarity=0.232 Sum_probs=54.5
Q ss_pred CCCCCcccCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCC
Q 005381 550 SFDKLLWVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHS 618 (699)
Q Consensus 550 ~l~~L~~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp 618 (699)
.+......+.||+|.|++..+.. |+.++.|..|+++.|+|..+ |..++.+..+..+++..|..+..|
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~--~~d~~q~~e~~~~~~~~n~~~~~p 104 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFL--PKDAKQQRETVNAASHKNNHSQQP 104 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhC--hhhHHHHHHHHHHHhhccchhhCC
Confidence 56667778888999998877776 88888888999999988776 567777888888888888887776
No 229
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.57 E-value=0.36 Score=35.53 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHH
Q 005381 177 AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHL 228 (699)
Q Consensus 177 AW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~ 228 (699)
+|...+.++..+++ ++++++.+.+++..+|+|..+|..+.
T Consensus 3 ~~~~la~~~~~~G~------------~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQ------------PDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCC------------HHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 56677777776654 89999999999999999999998753
No 230
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=91.37 E-value=6.5 Score=44.98 Aligned_cols=155 Identities=15% Similarity=0.098 Sum_probs=99.5
Q ss_pred hcCCCCcHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHH-------
Q 005381 35 HHNHIYSKEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR------- 99 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~--------nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~------- 99 (699)
-..|+| ++|..++..+|.+ .|.-++.-+.-+.++..+.+ +.+++..|+++|.
T Consensus 210 ~~~g~~-e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k------------~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 210 AVQGRL-EKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK------------YDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHhccH-HHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc------------HHHHHHHHHHHHHHHHHhcC
Confidence 457888 8999999999999 88888888877777777754 5566666666654
Q ss_pred -hCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhh--------hhHHHHHHHhcCCChHHHHHHHHHHHHh
Q 005381 100 -QNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHA--------WNYRRFVAASMNRSEEDELKYTEDMICN 170 (699)
Q Consensus 100 -~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~ha--------W~yR~~vl~~l~~~~e~EL~~~~~~I~~ 170 (699)
.+|....+.+.-..++.+. +.++++-.+|++++++..+.+-+ -..-+-+...++.+ +++..++.+++++
T Consensus 277 ~~h~~va~~l~nLa~ly~~~-GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~-Eea~~l~q~al~i 354 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQ-GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY-EEAKKLLQKALKI 354 (508)
T ss_pred CCCHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 3444433433334444333 68999999999999887663222 22333444455666 5677777777765
Q ss_pred cc-----CchHH---HHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHh
Q 005381 171 NF-----SNYSA---WHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFT 216 (699)
Q Consensus 171 n~-----sN~SA---W~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~ 216 (699)
.- .|+.. ..+.+.++..+++ |+++.+++.+||..
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk------------~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGK------------YKEAEELYKKAIQI 396 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcc------------hhHHHHHHHHHHHH
Confidence 32 33233 3344445555544 78888888888864
No 231
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=91.07 E-value=8.3 Score=38.47 Aligned_cols=110 Identities=17% Similarity=0.074 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCch---HHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCC
Q 005381 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELY---TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF 102 (699)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~y---taWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nP 102 (699)
.+..........|.| .+|++.++.++...|... .++...+.+....+ .+.+++..++..++.+|
T Consensus 7 ~lY~~a~~~~~~g~y-~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~------------~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 7 ALYQKALEALQQGDY-EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG------------DYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHHHHHHCT-H-HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCC
Confidence 444555666788888 799999999999998765 55555555555553 49999999999999999
Q ss_pred CChH---HHHHHHHHHHhCC----------CChHHHHHHHHHHHHhCCCChhhhhHHHH
Q 005381 103 KSYG---AWHHRKWILSKGH----------SSIDNELRLLDKFQKADSRNFHAWNYRRF 148 (699)
Q Consensus 103 Ksy~---aW~hR~w~L~~~~----------~~~~~EL~~~~k~L~~dprN~haW~yR~~ 148 (699)
++.. |++.++....... ....+++..+..+++..|..-++-.=+..
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~ 132 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR 132 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH
Confidence 9875 7777877654221 12347888888888888888877554433
No 232
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.68 E-value=0.61 Score=34.25 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHH
Q 005381 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYR 146 (699)
Q Consensus 106 ~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR 146 (699)
.+|...+.++... +.++++.+.++++++.+|.|..+|..-
T Consensus 2 ~~~~~la~~~~~~-G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRL-GQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 4566666666666 577777777777777777777777643
No 233
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.68 E-value=22 Score=38.36 Aligned_cols=123 Identities=13% Similarity=0.077 Sum_probs=85.6
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHH
Q 005381 46 ELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNE 125 (699)
Q Consensus 46 ~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~E 125 (699)
.-+.+.+..||.+..+|--=-.....+...............+.-|..+++||+.||.+...|....-+..+.- +-++-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~-~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW-DSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHH
Confidence 34678899999999999854444444322000002345567889999999999999999999988877777663 55566
Q ss_pred HHHHHHHHHhCCCChhhhhHH-HHHHHhcCCCh-HHHHHHHHHHHH
Q 005381 126 LRLLDKFQKADSRNFHAWNYR-RFVAASMNRSE-EDELKYTEDMIC 169 (699)
Q Consensus 126 L~~~~k~L~~dprN~haW~yR-~~vl~~l~~~~-e~EL~~~~~~I~ 169 (699)
.+-.++++..+|.++.-|--. .|....++.+. .+-.+.+.++|.
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 778899999999999999755 55555555432 334444444443
No 234
>PRK15331 chaperone protein SicA; Provisional
Probab=90.36 E-value=14 Score=35.77 Aligned_cols=93 Identities=8% Similarity=-0.151 Sum_probs=82.0
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHH
Q 005381 28 QSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGA 107 (699)
Q Consensus 28 ~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~a 107 (699)
-+......++|.+ ++|..++.-+...+|-++..|.--+-+.+.++. |++++.+|..+....+++|..
T Consensus 41 Y~~Ay~~y~~Gk~-~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~------------y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 41 YAHAYEFYNQGRL-DEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ------------FQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred HHHHHHHHHCCCH-HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHcccCCCCc
Confidence 3445667788999 799999999999999999999888888887754 999999999999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005381 108 WHHRKWILSKGHSSIDNELRLLDKFQK 134 (699)
Q Consensus 108 W~hR~w~L~~~~~~~~~EL~~~~k~L~ 134 (699)
-.|-+-+.-.+ +..+.+..++..+++
T Consensus 108 ~f~agqC~l~l-~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 VFFTGQCQLLM-RKAAKARQCFELVNE 133 (165)
T ss_pred cchHHHHHHHh-CCHHHHHHHHHHHHh
Confidence 99999988877 588999999999988
No 235
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.25 E-value=0.18 Score=29.47 Aligned_cols=16 Identities=44% Similarity=0.578 Sum_probs=7.0
Q ss_pred ccCEEEccCCCCCCCc
Q 005381 556 WVQMLDLSHNELRSIE 571 (699)
Q Consensus 556 ~L~~LdLS~N~L~~l~ 571 (699)
+|+.|+|++|+|+.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666655543
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.12 E-value=4.4 Score=37.56 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=50.0
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHh-ccCch---HHHHHHHHHHHHhhh
Q 005381 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICN-NFSNY---SAWHNRSLLLSNLLK 190 (699)
Q Consensus 120 ~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~-n~sN~---SAW~~R~~ll~~l~~ 190 (699)
++++.+|+.+.++|.+-|.+.+|+++|...++--++. ++.++-..++++. .+.-- .|+.+|+.+.+.++.
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~-e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDD-EEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCCh-HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 5777888888888888888888888887777766666 6777777777775 23322 466777777766654
No 237
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.04 E-value=0.54 Score=38.79 Aligned_cols=68 Identities=16% Similarity=0.069 Sum_probs=51.6
Q ss_pred CCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHh----C---CCChHHHHHHHHHHHhCCCChHHHHHH
Q 005381 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ----N---FKSYGAWHHRKWILSKGHSSIDNELRL 128 (699)
Q Consensus 56 P~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~----n---PKsy~aW~hR~w~L~~~~~~~~~EL~~ 128 (699)
|+-..+++..+.++..+++ ++++++++++++.+ . |.-..+++..+++.... +++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~ 68 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGR------------YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRL-GDYEEALEY 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHT-THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 4556788889999988865 89999999999954 1 22344566667777776 689999999
Q ss_pred HHHHHHhC
Q 005381 129 LDKFQKAD 136 (699)
Q Consensus 129 ~~k~L~~d 136 (699)
+++++++.
T Consensus 69 ~~~al~i~ 76 (78)
T PF13424_consen 69 YQKALDIF 76 (78)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99999864
No 238
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=89.69 E-value=0.39 Score=53.24 Aligned_cols=70 Identities=14% Similarity=0.065 Sum_probs=61.6
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhh
Q 005381 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (699)
Q Consensus 120 ~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~ 190 (699)
..++.++.+|.|+|++||.+.+-|..|....-+.+.+ ..++.-..++|+.+|...-|++-|+.....+++
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~-~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESF-GGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechh-hhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 3688999999999999999999999999776666666 568888899999999999999999888887765
No 239
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.30 E-value=0.8 Score=31.17 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 005381 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN 139 (699)
Q Consensus 106 ~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN 139 (699)
.+|..++-+.... +.+++++++++++++++|+|
T Consensus 2 ~~~~~lg~~y~~~-~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQL-GDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHT-TSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Confidence 5677777777776 57888888888888888754
No 240
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=89.17 E-value=23 Score=36.54 Aligned_cols=136 Identities=11% Similarity=0.089 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHhCCCChHHHHHHHHHHHHhCCCChh---hhhHHHHHHHhcC----
Q 005381 85 SILDEELRVVESALRQNFKSYGAW---HHRKWILSKGHSSIDNELRLLDKFQKADSRNFH---AWNYRRFVAASMN---- 154 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW---~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~h---aW~yR~~vl~~l~---- 154 (699)
+.+++++..++.++..+|.+..+= ..-+.+.-+. ..+++++..++++++.+|.+.. |+.-++.+-..++
T Consensus 46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~-~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~ 124 (243)
T PRK10866 46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSAL 124 (243)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhh
Confidence 349999999999999999986553 2223333444 6899999999999999998864 4455554422221
Q ss_pred -CC------------hHHHHHHHHHHHHhccCchHHHHHHH--HHH-HHhhhhh--ccCccchhchHHHHHHHHHHHHHh
Q 005381 155 -RS------------EEDELKYTEDMICNNFSNYSAWHNRS--LLL-SNLLKRK--VEGFVSKEKVLPDEYEFVHQAIFT 216 (699)
Q Consensus 155 -~~------------~e~EL~~~~~~I~~n~sN~SAW~~R~--~ll-~~l~~~~--~~~~~~~~~~~~eeL~~~~~ai~~ 216 (699)
.+ ..+.++.+.+.|+..|.-..+--=+. ..+ .++.... .+.+-.+.+.|..++..++..+..
T Consensus 125 ~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~ 204 (243)
T PRK10866 125 QGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRD 204 (243)
T ss_pred hhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 00 14577888999999996654432222 122 2221110 011122334577888888888888
Q ss_pred CCCCc
Q 005381 217 DPDDQ 221 (699)
Q Consensus 217 dP~d~ 221 (699)
.|+-.
T Consensus 205 Yp~t~ 209 (243)
T PRK10866 205 YPDTQ 209 (243)
T ss_pred CCCCc
Confidence 88743
No 241
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=89.15 E-value=7.3 Score=36.42 Aligned_cols=113 Identities=11% Similarity=-0.062 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhCCCC-hH--HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh---hhhhHHHHHHHhcCCChHHH
Q 005381 87 LDEELRVVESALRQNFKS-YG--AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF---HAWNYRRFVAASMNRSEEDE 160 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nPKs-y~--aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~---haW~yR~~vl~~l~~~~e~E 160 (699)
....-..++.+...+|++ |. ++....-+.... +.++++.+.+++++...|... -++.....++-..+.+ ++.
T Consensus 27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~-g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~-d~A 104 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQ-GDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY-DEA 104 (145)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH-HHH
Confidence 455556789999999999 43 333333444333 689999999999999875542 3555557777777887 567
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHH
Q 005381 161 LKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAI 214 (699)
Q Consensus 161 L~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai 214 (699)
++.... +...+....++..++-++...++ ++++...|.+|+
T Consensus 105 l~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~------------~~~A~~~y~~Al 145 (145)
T PF09976_consen 105 LATLQQ-IPDEAFKALAAELLGDIYLAQGD------------YDEARAAYQKAL 145 (145)
T ss_pred HHHHHh-ccCcchHHHHHHHHHHHHHHCCC------------HHHHHHHHHHhC
Confidence 777544 55555566777788888777655 688999888874
No 242
>PRK15386 type III secretion protein GogB; Provisional
Probab=89.06 E-value=0.6 Score=51.68 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=46.5
Q ss_pred CCCCcccCEEEccCCCCCCCcCCccccccceeeccc-CCCCCCCCCccccccccccccccccc-cCCCCC
Q 005381 551 FDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSN-NILGSFTALEPIRQLKSLRALNISYN-EIGAHS 618 (699)
Q Consensus 551 l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~-N~l~~l~~~~~l~~l~~L~~L~Ls~N-~I~~lp 618 (699)
+..+.++..|++++|.|+.+|.+ ..+|+.|.+++ +.++.+ |..+ .++|+.|++++| .+..+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsL--P~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTL--PGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccC--Cchh--hhhhhheEccCcccccccc
Confidence 44468899999999999999842 23699999987 556655 3333 258999999998 777765
No 243
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=88.43 E-value=39 Score=36.22 Aligned_cols=120 Identities=14% Similarity=0.180 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhCCCchHHH--H-HHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 005381 42 KEAVELSTKLLETNPELYTAW--N-YRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG 118 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaW--n-~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~ 118 (699)
++|++.-.++.++.|+.|.+= . |=-.....+. ...++.++..+.+++..|||+.-|=--.+-+.-..
T Consensus 158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~----------~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~ 227 (389)
T COG2956 158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA----------SSDVDRARELLKKALQADKKCVRASIILGRVELAK 227 (389)
T ss_pred HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh----------hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhc
Confidence 466666666777777766432 1 2222222222 25578899999999999999998877777766654
Q ss_pred CCChHHHHHHHHHHHHhCCCChhh-hhHHHHHHHhcCCChHHHHHHHHHHHHhccC
Q 005381 119 HSSIDNELRLLDKFQKADSRNFHA-WNYRRFVAASMNRSEEDELKYTEDMICNNFS 173 (699)
Q Consensus 119 ~~~~~~EL~~~~k~L~~dprN~ha-W~yR~~vl~~l~~~~e~EL~~~~~~I~~n~s 173 (699)
+.++.+++.++.+++.||..-.- -.--.-+..++|++ ++-+.|..++++.++.
T Consensus 228 -g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~-~~~~~fL~~~~~~~~g 281 (389)
T COG2956 228 -GDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP-AEGLNFLRRAMETNTG 281 (389)
T ss_pred -cchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHccCC
Confidence 68999999999999999853321 11112233445666 5566676666665543
No 244
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.43 E-value=0.61 Score=42.30 Aligned_cols=75 Identities=20% Similarity=0.390 Sum_probs=41.6
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
+.+.. .+..++ .|.++++|+.+.+..+ +..++. |..+++|+.+.+.+ .+..++. ..|..+++|+.+.+..|
T Consensus 17 i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~-~~F~~~~~l~~i~~~~~- 91 (129)
T PF13306_consen 17 ITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD-NAFSNCTNLKNIDIPSN- 91 (129)
T ss_dssp EEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T-TTTTT-TTECEEEETTT-
T ss_pred EEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc-ccccccccccccccCcc-
Confidence 55553 456555 6777777888888775 766666 77777788888765 4444422 45666777877777654
Q ss_pred CCCC
Q 005381 614 IGAH 617 (699)
Q Consensus 614 I~~l 617 (699)
+..+
T Consensus 92 ~~~i 95 (129)
T PF13306_consen 92 ITEI 95 (129)
T ss_dssp -BEE
T ss_pred ccEE
Confidence 4444
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.17 E-value=5.8 Score=44.53 Aligned_cols=151 Identities=19% Similarity=0.251 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~ 121 (699)
+.-+++-.++|++||++.+||..-.+ ++. ..+.++.+++.++++....++. |....+.....
T Consensus 185 ~aRIkaA~eALei~pdCAdAYILLAE--------EeA------~Ti~Eae~l~rqAvkAgE~~lg----~s~~~~~~g~~ 246 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYILLAE--------EEA------STIVEAEELLRQAVKAGEASLG----KSQFLQHHGHF 246 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhccc--------ccc------cCHHHHHHHHHHHHHHHHHhhc----hhhhhhcccch
Confidence 67788999999999999999864332 111 1134444455554443333222 11111111000
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHH--HHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccch
Q 005381 122 IDNELRLLDKFQKADSRNFHAWNYR--RFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSK 199 (699)
Q Consensus 122 ~~~EL~~~~k~L~~dprN~haW~yR--~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~ 199 (699)
++ .....| -|-...--| +.++.++|+. +++++-+.++++.+| +-+.-.-|..|+..+..
T Consensus 247 ~e-------~~~~Rd-t~~~~y~KrRLAmCarklGr~-~EAIk~~rdLlke~p-~~~~l~IrenLie~LLe--------- 307 (539)
T PF04184_consen 247 WE-------AWHRRD-TNVLVYAKRRLAMCARKLGRL-REAIKMFRDLLKEFP-NLDNLNIRENLIEALLE--------- 307 (539)
T ss_pred hh-------hhhccc-cchhhhhHHHHHHHHHHhCCh-HHHHHHHHHHHhhCC-ccchhhHHHHHHHHHHh---------
Confidence 01 001111 111111222 3456678887 678888899998887 33444567777776643
Q ss_pred hchHHHHHHHHHHHHHhCCCC----chhHHHHHHHHcC
Q 005381 200 EKVLPDEYEFVHQAIFTDPDD----QSGWFYHLWLLDQ 233 (699)
Q Consensus 200 ~~~~~eeL~~~~~ai~~dP~d----~SaW~Y~~~Ll~~ 233 (699)
.++..-++..+..+.++ ..+|+|-+-||..
T Consensus 308 ----lq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 308 ----LQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred ----cCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 23444555566666553 6889999999864
No 246
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=87.64 E-value=13 Score=42.71 Aligned_cols=148 Identities=10% Similarity=0.043 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh
Q 005381 61 AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF 140 (699)
Q Consensus 61 aWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~ 140 (699)
+|++.......++. ++++|.+.++||...|..+....-++-++... +.+.++.+..+.+-.+|..+-
T Consensus 196 ~~~~lAqhyd~~g~------------~~~Al~~Id~aI~htPt~~ely~~KarilKh~-G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 196 TLYFLAQHYDYLGD------------YEKALEYIDKAIEHTPTLVELYMTKARILKHA-GDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred HHHHHHHHHHHhCC------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhCChhhH
Confidence 34677777777754 89999999999999999999999999999987 699999999999999998764
Q ss_pred hhhhHHHHHHHhcCCChHHHHHHHHHHHHhc--cCc-----hHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHH
Q 005381 141 HAWNYRRFVAASMNRSEEDELKYTEDMICNN--FSN-----YSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQA 213 (699)
Q Consensus 141 haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n--~sN-----~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~a 213 (699)
.-=+--.-.+-+.|.. +++.+.+....+.+ |.. .+.|+.....-.... .+.+-.+|..++..
T Consensus 263 yiNsK~aKy~LRa~~~-e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r----------~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 263 YINSKCAKYLLRAGRI-EEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR----------QGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHH
Confidence 3211111112223443 44444444443333 222 357766554333221 12355666655544
Q ss_pred H------HhCCCCchhHHHHHHHHc
Q 005381 214 I------FTDPDDQSGWFYHLWLLD 232 (699)
Q Consensus 214 i------~~dP~d~SaW~Y~~~Ll~ 232 (699)
. ..|-=|-..|+.++..+.
T Consensus 332 ~k~f~~~~~DQfDFH~Yc~RK~t~r 356 (517)
T PF12569_consen 332 LKHFDDFEEDQFDFHSYCLRKMTLR 356 (517)
T ss_pred HHHHHHHhcccccHHHHHHhhccHH
Confidence 3 233345556666655443
No 247
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.48 E-value=2.5 Score=43.01 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=68.2
Q ss_pred CCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 005381 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK 117 (699)
Q Consensus 38 ~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~ 117 (699)
+.+...|+++|.++|.+||-..+.|-.|..+-.++. .++....-+.+++...|+..-+=+.-+-.+.+
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~------------~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLK------------HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhh------------hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 444579999999999999999999888887776653 47888889999999999999988887655554
Q ss_pred CCCChHHHHHHHHHHHH
Q 005381 118 GHSSIDNELRLLDKFQK 134 (699)
Q Consensus 118 ~~~~~~~EL~~~~k~L~ 134 (699)
.+ .+++++..+.++..
T Consensus 91 s~-~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 91 SK-GYDEAIKVLQRAYS 106 (284)
T ss_pred hc-cccHHHHHHHHHHH
Confidence 53 68889998888843
No 248
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=87.25 E-value=0.22 Score=29.07 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=5.8
Q ss_pred cccccccccccCCCC
Q 005381 603 SLRALNISYNEIGAH 617 (699)
Q Consensus 603 ~L~~L~Ls~N~I~~l 617 (699)
+|+.|+|++|+|+.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344555555554443
No 249
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=87.00 E-value=2.4 Score=47.52 Aligned_cols=112 Identities=10% Similarity=-0.021 Sum_probs=85.9
Q ss_pred CCChHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcC--CChHHHHHHHHHHHHhccCc
Q 005381 102 FKSYGAWHHRKWILSKGHS-----SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMN--RSEEDELKYTEDMICNNFSN 174 (699)
Q Consensus 102 PKsy~aW~hR~w~L~~~~~-----~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~--~~~e~EL~~~~~~I~~n~sN 174 (699)
||.|+.--+-.|..+.... .+..|+..+.+++..-|.+..+.-.|.-++.+-+ -..-.++.-|..+++.||+-
T Consensus 365 ~~~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~ 444 (758)
T KOG1310|consen 365 PRFYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI 444 (758)
T ss_pred cchhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH
Confidence 5667777777777776542 3458899999999999999999888866653321 11135777789999999999
Q ss_pred hHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHH
Q 005381 175 YSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (699)
Q Consensus 175 ~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~ 225 (699)
.-||++..-.|..+.+ +.+++++...+....|.|..-=.
T Consensus 445 ~kah~~la~aL~el~r------------~~eal~~~~alq~~~Ptd~a~~~ 483 (758)
T KOG1310|consen 445 QKAHFRLARALNELTR------------YLEALSCHWALQMSFPTDVARQN 483 (758)
T ss_pred HHHHHHHHHHHHHHhh------------HHHhhhhHHHHhhcCchhhhhhh
Confidence 9999999999998865 89999998888888887665433
No 250
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=86.06 E-value=6.4 Score=41.78 Aligned_cols=88 Identities=8% Similarity=0.024 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHH
Q 005381 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTE 165 (699)
Q Consensus 86 ~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~ 165 (699)
.++++..+|+.+....|.+....+...++.-.. +.|+++-+.+..+++.||+|..+..+..-+-..+|...+..-++..
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~-~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL-GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC-T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 367888888888777788888877777777666 5888888888888889999988888887777788877443445655
Q ss_pred HHHHhccCc
Q 005381 166 DMICNNFSN 174 (699)
Q Consensus 166 ~~I~~n~sN 174 (699)
.+-..+|..
T Consensus 261 qL~~~~p~h 269 (290)
T PF04733_consen 261 QLKQSNPNH 269 (290)
T ss_dssp HCHHHTTTS
T ss_pred HHHHhCCCC
Confidence 555566663
No 251
>PLN03077 Protein ECB2; Provisional
Probab=85.83 E-value=33 Score=42.16 Aligned_cols=165 Identities=8% Similarity=-0.021 Sum_probs=103.9
Q ss_pred CCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHH
Q 005381 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR--QNFKSYGAWHHRKWIL 115 (699)
Q Consensus 38 ~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~--~nPKsy~aW~hR~w~L 115 (699)
|.. ++|++.++.+ +.+...||.--..+...+. .++++++++++.. ..|...+...--. ..
T Consensus 538 G~~-~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~------------~~~A~~lf~~M~~~g~~Pd~~T~~~ll~-a~ 599 (857)
T PLN03077 538 GRM-NYAWNQFNSH----EKDVVSWNILLTGYVAHGK------------GSMAVELFNRMVESGVNPDEVTFISLLC-AC 599 (857)
T ss_pred CCH-HHHHHHHHhc----CCChhhHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCCCcccHHHHHH-HH
Confidence 444 7888888775 5677789976655555544 7899999999887 4566555332222 22
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHH--HHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhc
Q 005381 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYR--RFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKV 193 (699)
Q Consensus 116 ~~~~~~~~~EL~~~~k~L~~dprN~haW~yR--~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~ 193 (699)
.+. +.+++++++++.+.+.++-.....+|- .-++.+.|.. +++.++++++ ...| |...|.-.-..... +
T Consensus 600 ~~~-g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~-~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~-~---- 670 (857)
T PLN03077 600 SRS-GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL-TEAYNFINKM-PITP-DPAVWGALLNACRI-H---- 670 (857)
T ss_pred hhc-ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH-HHHHHHHHHC-CCCC-CHHHHHHHHHHHHH-c----
Confidence 233 578999999999986554444444444 4446666776 5677776664 2333 34555443333221 1
Q ss_pred cCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCC
Q 005381 194 EGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (699)
Q Consensus 194 ~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~ 236 (699)
+..+.+-...+++++++|++.+.+..+.+++....+
T Consensus 671 -------~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 671 -------RHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred -------CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 112334445677889999999998888888765443
No 252
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.67 E-value=4.7 Score=42.88 Aligned_cols=156 Identities=15% Similarity=0.092 Sum_probs=115.9
Q ss_pred CCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 005381 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK 117 (699)
Q Consensus 38 ~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~ 117 (699)
+++ ++|+++|..+|+..|.+..+--.-+- ...- + ..-+-+|.+|.++|..--.|.+.+..-+.+-..
T Consensus 304 ~~~-~~a~~lYk~vlk~~~~nvEaiAcia~--~yfY---~-------~~PE~AlryYRRiLqmG~~speLf~NigLCC~y 370 (478)
T KOG1129|consen 304 EQQ-EDALQLYKLVLKLHPINVEAIACIAV--GYFY---D-------NNPEMALRYYRRILQMGAQSPELFCNIGLCCLY 370 (478)
T ss_pred HhH-HHHHHHHHHHHhcCCccceeeeeeee--cccc---C-------CChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh
Confidence 444 79999999999999998765321110 0010 1 124678999999999999999999888777665
Q ss_pred CCCChHHHHHHHHHHHHhC---CCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhcc
Q 005381 118 GHSSIDNELRLLDKFQKAD---SRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVE 194 (699)
Q Consensus 118 ~~~~~~~EL~~~~k~L~~d---prN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~ 194 (699)
. ..+|-.|.++.+++..- .--...|++-++|.-..|... -+-.++.-++..|+.+-.|.++.+.+-.+-+.
T Consensus 371 a-qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~n-lA~rcfrlaL~~d~~h~ealnNLavL~~r~G~---- 444 (478)
T KOG1129|consen 371 A-QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFN-LAKRCFRLALTSDAQHGEALNNLAVLAARSGD---- 444 (478)
T ss_pred h-cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchH-HHHHHHHHHhccCcchHHHHHhHHHHHhhcCc----
Confidence 4 57889999999998754 344578999999998888873 45566788888999999999999877554332
Q ss_pred CccchhchHHHHHHHHHHHHHhCCCC
Q 005381 195 GFVSKEKVLPDEYEFVHQAIFTDPDD 220 (699)
Q Consensus 195 ~~~~~~~~~~eeL~~~~~ai~~dP~d 220 (699)
++++-.++..|-...|+-
T Consensus 445 --------i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 445 --------ILGARSLLNAAKSVMPDM 462 (478)
T ss_pred --------hHHHHHHHHHhhhhCccc
Confidence 577777888777777753
No 253
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=84.91 E-value=1.2 Score=36.75 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC---C-CC---hhhhhHHHHHHHhcCCChHHHHHHHHHHHHh
Q 005381 104 SYGAWHHRKWILSKGHSSIDNELRLLDKFQKAD---S-RN---FHAWNYRRFVAASMNRSEEDELKYTEDMICN 170 (699)
Q Consensus 104 sy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~d---p-rN---~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~ 170 (699)
-..++...+.++... ++++++++++++++++- + .+ ..++...+.+...+|.+ +++++++++++++
T Consensus 4 ~a~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~-~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYREL-GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY-EEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhh
Confidence 346778888888877 69999999999999652 2 22 34555668888888887 7899998888875
No 254
>PLN03218 maturation of RBCL 1; Provisional
Probab=84.89 E-value=63 Score=40.70 Aligned_cols=133 Identities=14% Similarity=0.015 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC-CCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 87 LDEELRVVESALRQN-FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKAD-SRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 87 ~~eEL~~~~~~L~~n-PKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~d-prN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
+++++++++.+.+.+ +.+..+|+--.-.+.+. +.+++++++++.+.+.. .-|..+|..-.-.+.+.+.. ++.++.+
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~-G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~-eeA~~l~ 672 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK-GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL-DKAFEIL 672 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH-HHHHHHH
Confidence 666777777777655 33445555444444444 46677777777776642 11334444444444455555 5566666
Q ss_pred HHHHHhcc-CchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHh--CCCCchhHHHHHHHHcCc
Q 005381 165 EDMICNNF-SNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFT--DPDDQSGWFYHLWLLDQT 234 (699)
Q Consensus 165 ~~~I~~n~-sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~--dP~d~SaW~Y~~~Ll~~~ 234 (699)
.++++... -|...|......+.+. +.++++++.+++.... .| |...|+.....+.+.
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~------------G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNA------------KNWKKALELYEDIKSIKLRP-TVSTMNALITALCEG 732 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhC------------CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHC
Confidence 66666542 2334443333333322 2367777777766442 34 455676655555443
No 255
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.80 E-value=0.72 Score=29.78 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=10.6
Q ss_pred cccCEEEccCCCCCCCcC
Q 005381 555 LWVQMLDLSHNELRSIEG 572 (699)
Q Consensus 555 ~~L~~LdLS~N~L~~l~~ 572 (699)
++|+.|+|++|.|..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 455666666666665554
No 256
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.80 E-value=0.72 Score=29.78 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=10.6
Q ss_pred cccCEEEccCCCCCCCcC
Q 005381 555 LWVQMLDLSHNELRSIEG 572 (699)
Q Consensus 555 ~~L~~LdLS~N~L~~l~~ 572 (699)
++|+.|+|++|.|..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 455666666666665554
No 257
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=84.80 E-value=23 Score=42.42 Aligned_cols=90 Identities=13% Similarity=0.079 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
+.+..++.-++++++++|+...|=..++.++.++ ++.++++++.+..-...+.+-..-..-..|++.++.. ++...++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~-gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~-d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRL-GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL-DEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHh-cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh-hHHHHHH
Confidence 5689999999999999999999999999999998 6999999888887777777777777778889999998 6799999
Q ss_pred HHHHHhccCchHH
Q 005381 165 EDMICNNFSNYSA 177 (699)
Q Consensus 165 ~~~I~~n~sN~SA 177 (699)
++++..+|+ +.-
T Consensus 101 e~~~~~~P~-eel 112 (932)
T KOG2053|consen 101 ERANQKYPS-EEL 112 (932)
T ss_pred HHHHhhCCc-HHH
Confidence 999999999 543
No 258
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=84.66 E-value=0.31 Score=30.35 Aligned_cols=13 Identities=54% Similarity=0.580 Sum_probs=6.3
Q ss_pred cceeecccCCCCC
Q 005381 579 LSCLNLSNNILGS 591 (699)
Q Consensus 579 L~~L~Ls~N~l~~ 591 (699)
|+.|+|++|+|+.
T Consensus 2 L~~Ldls~n~l~~ 14 (22)
T PF00560_consen 2 LEYLDLSGNNLTS 14 (22)
T ss_dssp ESEEEETSSEESE
T ss_pred ccEEECCCCcCEe
Confidence 4445555554443
No 259
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.29 E-value=0.07 Score=53.79 Aligned_cols=77 Identities=18% Similarity=0.131 Sum_probs=68.3
Q ss_pred EEccCCCCCccc-CCCCCcccCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCC
Q 005381 538 LQLKNLSLSRLG-SFDKLLWVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIG 615 (699)
Q Consensus 538 L~Ls~n~l~~l~-~l~~L~~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~ 615 (699)
|+++.|.+-.++ .|+.++.|..||+|.|.+.-+|. +..+..+..+++.+|..+.. |..++.++.++.+++-.|.+.
T Consensus 47 ld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~--p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 47 LDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQ--PKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhC--CccccccCCcchhhhccCcch
Confidence 888989888777 78889999999999999999998 99999999999999999876 677899999999999998864
Q ss_pred C
Q 005381 616 A 616 (699)
Q Consensus 616 ~ 616 (699)
.
T Consensus 125 ~ 125 (326)
T KOG0473|consen 125 R 125 (326)
T ss_pred H
Confidence 3
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=83.11 E-value=14 Score=34.86 Aligned_cols=67 Identities=22% Similarity=0.267 Sum_probs=50.2
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCch---HHHHHHHHHHHhhhc-------cCCCCchhhhhhHHHHHHHHHHHHHhCCCCh
Q 005381 36 HNHIYSKEAVELSTKLLETNPELY---TAWNYRKLAVQHKLT-------ENDSDPDSLKSILDEELRVVESALRQNFKSY 105 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~y---taWn~R~~~l~~l~~-------~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy 105 (699)
.++++ ++|+..++..|++||.|. -|+..||.+-..... ..+.|+ ....+++.-++.++...|+|.
T Consensus 59 ~~~~y-~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~----~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 59 KQGDY-EEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDP----TPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HccCH-HHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCc----HHHHHHHHHHHHHHHHCcCCh
Confidence 45666 699999999999999997 567778866554432 233444 447899999999999999986
Q ss_pred HH
Q 005381 106 GA 107 (699)
Q Consensus 106 ~a 107 (699)
-+
T Consensus 134 ya 135 (142)
T PF13512_consen 134 YA 135 (142)
T ss_pred hH
Confidence 54
No 261
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=82.81 E-value=1.7 Score=39.28 Aligned_cols=65 Identities=17% Similarity=0.291 Sum_probs=40.8
Q ss_pred CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCC
Q 005381 550 SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHS 618 (699)
Q Consensus 550 ~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp 618 (699)
.|.++.+|+.+.+.. .+..++. |..+.+|+.+.+.++ +..+.. ..|..+++|+.+.+.. .+..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~-~~F~~~~~l~~i~~~~-~~~~i~ 73 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGD-NAFSNCKSLESITFPN-NLKSIG 73 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-T-TTTTT-TT-EEEEETS-TT-EE-
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccce-eeeecccccccccccc-cccccc
Confidence 677888999999984 6877877 999989999999886 777643 5688888899999865 555443
No 262
>PRK10941 hypothetical protein; Provisional
Probab=82.46 E-value=7 Score=41.02 Aligned_cols=67 Identities=18% Similarity=-0.015 Sum_probs=58.1
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~ 114 (699)
.+.+.+ +.||.+.+.+|.+.|++..-|.-||.+..+++. +..|+.-++..+...|+...+=.-|..+
T Consensus 192 ~~~~~~-~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c------------~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 192 MEEKQM-ELALRASEALLQFDPEDPYEIRDRGLIYAQLDC------------EHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHcCcH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 345555 899999999999999999999999999999976 7899999999999999998886555444
No 263
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=82.11 E-value=23 Score=35.20 Aligned_cols=102 Identities=11% Similarity=0.019 Sum_probs=49.1
Q ss_pred CChHHHHHHHHHHHHhCCCCh---hhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCch---HHHHHHHHHHHHhhhhhc
Q 005381 120 SSIDNELRLLDKFQKADSRNF---HAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY---SAWHNRSLLLSNLLKRKV 193 (699)
Q Consensus 120 ~~~~~EL~~~~k~L~~dprN~---haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~---SAW~~R~~ll~~l~~~~~ 193 (699)
+.++++++.++++....|... .|+...+.+.-..+.+ ++++..+++.|+.+|... .|++.++.......+..-
T Consensus 19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y-~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~ 97 (203)
T PF13525_consen 19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDY-EEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL 97 (203)
T ss_dssp T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch
Confidence 456666666666666555433 3444444444444555 445555566666666554 244444444333322110
Q ss_pred cCccchhchHHHHHHHHHHHHHhCCCCchh
Q 005381 194 EGFVSKEKVLPDEYEFVHQAIFTDPDDQSG 223 (699)
Q Consensus 194 ~~~~~~~~~~~eeL~~~~~ai~~dP~d~Sa 223 (699)
..........+++..+...+...|+..-+
T Consensus 98 -~~~~D~~~~~~A~~~~~~li~~yP~S~y~ 126 (203)
T PF13525_consen 98 -RSDRDQTSTRKAIEEFEELIKRYPNSEYA 126 (203)
T ss_dssp --TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred -hcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence 00122234577788888888888876544
No 264
>PLN03218 maturation of RBCL 1; Provisional
Probab=81.98 E-value=99 Score=39.02 Aligned_cols=147 Identities=12% Similarity=0.071 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhC
Q 005381 42 KEAVELSTKLLETN-PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ--NFKSYGAWHHRKWILSKG 118 (699)
Q Consensus 42 ~eaL~~~~~~L~~n-P~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~--nPKsy~aW~hR~w~L~~~ 118 (699)
++|+++++.+...+ +.+...|+.--..+.+. ..+++++++++.+.+. .|. ...|..-...+.+.
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~------------G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~ 662 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK------------GDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHA 662 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc------------CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhC
Confidence 45555555555554 22334444333333333 3378888999888875 454 44555555555555
Q ss_pred CCChHHHHHHHHHHHHhC-CCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHhhhhhccCc
Q 005381 119 HSSIDNELRLLDKFQKAD-SRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN-FSNYSAWHNRSLLLSNLLKRKVEGF 196 (699)
Q Consensus 119 ~~~~~~EL~~~~k~L~~d-prN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n-~sN~SAW~~R~~ll~~l~~~~~~~~ 196 (699)
+.+++++++++.+.+.. +-|..+|+.-.-.+.+.+.. +++++.++++.+.. .-|...|+.....+.+.
T Consensus 663 -G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~-eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~-------- 732 (1060)
T PLN03218 663 -GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW-KKALELYEDIKSIKLRPTVSTMNALITALCEG-------- 732 (1060)
T ss_pred -CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC--------
Confidence 57889999999988765 34566777666667777776 66777777776542 23556666554444433
Q ss_pred cchhchHHHHHHHHHHHHH
Q 005381 197 VSKEKVLPDEYEFVHQAIF 215 (699)
Q Consensus 197 ~~~~~~~~eeL~~~~~ai~ 215 (699)
+.++++++.+++...
T Consensus 733 ----G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 733 ----NQLPKALEVLSEMKR 747 (1060)
T ss_pred ----CCHHHHHHHHHHHHH
Confidence 236778888776654
No 265
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=81.87 E-value=29 Score=35.79 Aligned_cols=118 Identities=8% Similarity=-0.107 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhh---hHHHHHHHhcCCChHHHHHHHHHHHHhccCch---HH
Q 005381 104 SYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAW---NYRRFVAASMNRSEEDELKYTEDMICNNFSNY---SA 177 (699)
Q Consensus 104 sy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW---~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~---SA 177 (699)
....++..+-..-+. +.++++++.+++++..+|....+= ..-+.+.-+.+.+ ++++..+++.|+.+|.+. .|
T Consensus 31 ~~~~~Y~~A~~~~~~-g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y-~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQD-GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL-PLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCcCCCchHHH
Confidence 556666666655544 699999999999999999876443 2234444556777 689999999999999886 34
Q ss_pred HHHHHHHHHHhhhh------hccCccchhchHHHHHHHHHHHHHhCCCCchh
Q 005381 178 WHNRSLLLSNLLKR------KVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSG 223 (699)
Q Consensus 178 W~~R~~ll~~l~~~------~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~Sa 223 (699)
++.++..-..+.+. .............++++.+++.+...|+-+-+
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya 160 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT 160 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH
Confidence 45554432222110 00011122334578999999999999986544
No 266
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=81.21 E-value=41 Score=40.24 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHH
Q 005381 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMIC 169 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~ 169 (699)
.++++.+.++++.+ +|..+|+--.-.+.+.|.. +++++.++++.+
T Consensus 375 ~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~-~~A~~lf~~M~~ 419 (697)
T PLN03081 375 RMEDARNVFDRMPR---KNLISWNALIAGYGNHGRG-TKAVEMFERMIA 419 (697)
T ss_pred CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCH-HHHHHHHHHHHH
Confidence 44555555554432 3444555444444444444 445555555544
No 267
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.10 E-value=2.9 Score=28.27 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC
Q 005381 59 YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (699)
Q Consensus 59 ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs 104 (699)
+.+|..++.+...++. +++++..++++++.+|++
T Consensus 1 a~~~~~lg~~y~~~~~------------~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGD------------YEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTS------------HHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCC
Confidence 3578999999998865 999999999999999953
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=80.68 E-value=26 Score=33.10 Aligned_cols=78 Identities=13% Similarity=-0.029 Sum_probs=42.7
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCCh---
Q 005381 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY--- 105 (699)
Q Consensus 29 ~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy--- 105 (699)
+...+...+|.| ++|.+.++.+...-|-...+=.-+-++....-. ...+.+++..+++.++.||++.
T Consensus 15 ~~a~~~l~~~~Y-~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~---------~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 15 QEAQEALQKGNY-EEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK---------QGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred HHHHHHHHhCCH-HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH---------ccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 333444455666 566666666666666554443333332222211 1346777777777777776664
Q ss_pred HHHHHHHHHHH
Q 005381 106 GAWHHRKWILS 116 (699)
Q Consensus 106 ~aW~hR~w~L~ 116 (699)
-|++.|+..-.
T Consensus 85 Ya~Y~~gL~~~ 95 (142)
T PF13512_consen 85 YAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHHHHH
Confidence 35666665443
No 269
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=80.46 E-value=30 Score=37.29 Aligned_cols=123 Identities=13% Similarity=0.067 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhCC-----------CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCCh
Q 005381 89 EELRVVESALRQNFKSYGAWHHRKWILSKGH-----------SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSE 157 (699)
Q Consensus 89 eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~-----------~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~ 157 (699)
+...-+++.++.||.+..+|-----.-.... +..++.+..+++||+.+|.+..-|....-+..++...
T Consensus 3 ~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~- 81 (321)
T PF08424_consen 3 KRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS- 81 (321)
T ss_pred hHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-
Confidence 4456678899999999999954333322221 1246889999999999999888888776666655432
Q ss_pred HHHHHHHHHHHHhccCchHHHHHH-HHHHHHhhhhhccCccchhchHHHHHHHHHHHHH
Q 005381 158 EDELKYTEDMICNNFSNYSAWHNR-SLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (699)
Q Consensus 158 e~EL~~~~~~I~~n~sN~SAW~~R-~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~ 215 (699)
++-.+-.++++..+|.++..|-.. .+...... ........++|.+.|........
T Consensus 82 ~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~---~f~v~~~~~~y~~~l~~L~~~~~ 137 (321)
T PF08424_consen 82 EKLAKKWEELLFKNPGSPELWREYLDFRQSNFA---SFTVSDVRDVYEKCLRALSRRRS 137 (321)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHHhhc
Confidence 444556799999999999999433 33332221 11222344556666666555443
No 270
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=79.12 E-value=15 Score=44.00 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=71.8
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchh
Q 005381 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKE 200 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~ 200 (699)
.+.+++..+++.++.+|+--.|=.+++.++.++|+.+ +++.+.+..-..-+.|-.-......++..+++
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~-ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~---------- 92 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGD-EALKLLEALYGLKGTDDLTLQFLQNVYRDLGK---------- 92 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCch-hHHHHHhhhccCCCCchHHHHHHHHHHHHHhh----------
Confidence 5779999999999999999999999999999999995 56666555555566677777667777766644
Q ss_pred chHHHHHHHHHHHHHhCCC
Q 005381 201 KVLPDEYEFVHQAIFTDPD 219 (699)
Q Consensus 201 ~~~~eeL~~~~~ai~~dP~ 219 (699)
+++++.++.+|++++|+
T Consensus 93 --~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 93 --LDEAVHLYERANQKYPS 109 (932)
T ss_pred --hhHHHHHHHHHHhhCCc
Confidence 89999999999999999
No 271
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=78.89 E-value=0.94 Score=29.23 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=11.7
Q ss_pred ccccccccccccCCCCC
Q 005381 602 KSLRALNISYNEIGAHS 618 (699)
Q Consensus 602 ~~L~~L~Ls~N~I~~lp 618 (699)
++|+.|+|++|+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 46677777777777765
No 272
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=78.89 E-value=0.94 Score=29.23 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=11.7
Q ss_pred ccccccccccccCCCCC
Q 005381 602 KSLRALNISYNEIGAHS 618 (699)
Q Consensus 602 ~~L~~L~Ls~N~I~~lp 618 (699)
++|+.|+|++|+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 46677777777777765
No 273
>PRK10941 hypothetical protein; Provisional
Probab=78.84 E-value=12 Score=39.22 Aligned_cols=61 Identities=11% Similarity=0.035 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHH
Q 005381 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNR 181 (699)
Q Consensus 120 ~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R 181 (699)
..+++++.+++.++.++|.+..-|.-||.+..+++-+ ..+++-.+..|+..|.+..|=--|
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~-~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCE-HVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHhCCCchhHHHHH
Confidence 5789999999999999999999999999999999998 678887799999999998874433
No 274
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=78.14 E-value=6.2 Score=41.60 Aligned_cols=91 Identities=12% Similarity=-0.067 Sum_probs=66.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhH
Q 005381 8 PLKPEDAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSIL 87 (699)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~ 87 (699)
+.++.++++.++.+. ...+....+.+|.. ++|..+++.+|.+.|++..+.---|.+..... .+
T Consensus 104 t~te~~pa~~kEA~~----Al~~A~~~~~~Gk~-ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~------------~i 166 (472)
T KOG3824|consen 104 TQTENDPAKVKEAIL----ALKAAGRSRKDGKL-EKAMTLFEHALALAPTNPQILIEMGQFREMHN------------EI 166 (472)
T ss_pred hhcccCchhhHHHHH----HHHHHHHHHhccch-HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh------------hh
Confidence 344444444444433 23344455666766 89999999999999999999887777766542 25
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 005381 88 DEELRVVESALRQNFKSYGAWHHRKWIL 115 (699)
Q Consensus 88 ~eEL~~~~~~L~~nPKsy~aW~hR~w~L 115 (699)
-++=.+|-++|.+.|-+..|...|.-..
T Consensus 167 v~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 167 VEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 6777899999999999999988886554
No 275
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.37 E-value=2 Score=45.89 Aligned_cols=92 Identities=13% Similarity=0.097 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
..++++++.+..++..||.+......|.-++-++ ..+..|+.-|+.+++++|.-....-.|+..=..++.+ +++-.+.
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl-~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~-e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKL-KKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW-EEAAHDL 205 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeec-cCCchhhhhhhhhhccCcccccccchhhHHHHHhhch-HHHHHHH
Confidence 3489999999999999999999999999999877 4778999999999999999999999999988888888 6677777
Q ss_pred HHHHHhccC-chHHH
Q 005381 165 EDMICNNFS-NYSAW 178 (699)
Q Consensus 165 ~~~I~~n~s-N~SAW 178 (699)
..+++++.. ..+||
T Consensus 206 ~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 206 ALACKLDYDEANSAT 220 (377)
T ss_pred HHHHhccccHHHHHH
Confidence 888887654 34666
No 276
>PLN03077 Protein ECB2; Provisional
Probab=76.48 E-value=84 Score=38.59 Aligned_cols=135 Identities=12% Similarity=0.054 Sum_probs=87.8
Q ss_pred CCCCcHHHHHHHHHHHH--hCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHH--
Q 005381 37 NHIYSKEAVELSTKLLE--TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK-- 112 (699)
Q Consensus 37 ~~~~~~eaL~~~~~~L~--~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~-- 112 (699)
.|.. ++|+++++++.. +.|+..|....-.- ..+. ..+++++++++.+...++-.+...+|-+
T Consensus 567 ~G~~-~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~------------g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 567 HGKG-SMAVELFNRMVESGVNPDEVTFISLLCA-CSRS------------GMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred cCCH-HHHHHHHHHHHHcCCCCCcccHHHHHHH-Hhhc------------ChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 4444 899999999887 57998886543322 2222 3388999999999966555555555544
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Q 005381 113 WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLL 189 (699)
Q Consensus 113 w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~ 189 (699)
-++.+. +.++++.++++++ .+.| |...|.----....-+.. +..-...+++++.+|.|.+.+.-.+.++...+
T Consensus 633 ~~l~r~-G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~-e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 633 DLLGRA-GKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHV-ELGELAAQHIFELDPNSVGYYILLCNLYADAG 705 (857)
T ss_pred HHHHhC-CCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence 334454 6899999999987 2344 456666443333333333 32223457889999999888777776665543
No 277
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.59 E-value=2.1 Score=28.02 Aligned_cols=17 Identities=41% Similarity=0.607 Sum_probs=8.3
Q ss_pred cccCEEEccCCCCCCCc
Q 005381 555 LWVQMLDLSHNELRSIE 571 (699)
Q Consensus 555 ~~L~~LdLS~N~L~~l~ 571 (699)
++|+.|+|++|+|+.++
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 34555555555554443
No 278
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=75.42 E-value=63 Score=36.62 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHH-HHHHHhCCC
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHR-KWILSKGHS 120 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR-~w~L~~~~~ 120 (699)
.+.+.+|..++..-+.+.+.|..--....+.. .+.+--..|.++|..+|++...|-+- .|..+.. .
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~------------~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n-~ 154 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKK------------TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN-L 154 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------------chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc-c
Confidence 47788999999999999999984433333332 14455578999999999999999987 4555543 4
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhh
Q 005381 121 SIDNELRLLDKFQKADSRNFHAWN 144 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~dprN~haW~ 144 (699)
..+.+-.++.+.|+.+|++..-|.
T Consensus 155 ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 155 NIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred chHHHHHHHHHHhhcCCCChHHHH
Confidence 688999999999999999999885
No 279
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=74.97 E-value=1.1e+02 Score=32.00 Aligned_cols=129 Identities=12% Similarity=0.031 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHH
Q 005381 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~ 166 (699)
++.+=..+.+|++..+-.|++|..-..+=.+.....+.+...++.+++..|.+..-|..=.-.+.+++.. +..-..+++
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~-~~aR~lfer 95 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDI-NNARALFER 95 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H-HHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcH-HHHHHHHHH
Confidence 6788889999997777789999855555344445667799999999999999998887544444456654 556667788
Q ss_pred HHHhccCch-HHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHH
Q 005381 167 MICNNFSNY-SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFY 226 (699)
Q Consensus 167 ~I~~n~sN~-SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y 226 (699)
++..-+... +.=-+..++=.. ...+-++.-.....++....|++.+.+.+
T Consensus 96 ~i~~l~~~~~~~~iw~~~i~fE----------~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f 146 (280)
T PF05843_consen 96 AISSLPKEKQSKKIWKKFIEFE----------SKYGDLESVRKVEKRAEELFPEDNSLELF 146 (280)
T ss_dssp HCCTSSCHHHCHHHHHHHHHHH----------HHHS-HHHHHHHHHHHHHHTTTS-HHHHH
T ss_pred HHHhcCchhHHHHHHHHHHHHH----------HHcCCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 888766666 332233332111 11122455566777888888888877754
No 280
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=74.26 E-value=90 Score=37.30 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHcCc
Q 005381 203 LPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (699)
Q Consensus 203 ~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~ 234 (699)
++.+...+++++..+|++.+.+...--++...
T Consensus 510 ~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 510 LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 45566666777777887777766655555443
No 281
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.18 E-value=1.7 Score=49.15 Aligned_cols=54 Identities=35% Similarity=0.398 Sum_probs=36.4
Q ss_pred EEccCCCCCcccCCCC----CcccCEEEccCC--CCCCCcCCcccc--ccceeecccCCCCC
Q 005381 538 LQLKNLSLSRLGSFDK----LLWVQMLDLSHN--ELRSIEGLEALQ--LLSCLNLSNNILGS 591 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~----L~~L~~LdLS~N--~L~~l~~l~~L~--~L~~L~Ls~N~l~~ 591 (699)
++|++|.+..+..+.. -++|..|+||+| .+...+.+.++. .|++|-|.+|.+..
T Consensus 223 l~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 223 LSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred eecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 7788888887764444 378888888888 554333333322 37788888888854
No 282
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=72.75 E-value=1.3e+02 Score=34.62 Aligned_cols=128 Identities=19% Similarity=0.109 Sum_probs=77.5
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhC
Q 005381 30 QFLHNHHNHIYSKEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN 101 (699)
Q Consensus 30 ~~~~~~~~~~~~~eaL~~~~~~L~~--------nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~n 101 (699)
..+..+..+.| .+|..+|.++|.+ +|...++.+.-..++...++ +.++-..|+.|+.+-
T Consensus 247 ~a~~y~~~~k~-~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GK------------f~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 247 LALVYRSLGKY-DEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGK------------FAEAEEYCERALEIY 313 (508)
T ss_pred HHHHHHHhccH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCC------------hHHHHHHHHHHHHHH
Confidence 33445667777 6888888888876 44444555544555544443 555555555555544
Q ss_pred CCChHHHHH-------HHHHHHhCCCChHHHHHHHHHHHHhCC-----CCh---hhhhHHHHHHHhcCCChHHHHHHHHH
Q 005381 102 FKSYGAWHH-------RKWILSKGHSSIDNELRLLDKFQKADS-----RNF---HAWNYRRFVAASMNRSEEDELKYTED 166 (699)
Q Consensus 102 PKsy~aW~h-------R~w~L~~~~~~~~~EL~~~~k~L~~dp-----rN~---haW~yR~~vl~~l~~~~e~EL~~~~~ 166 (699)
-|.+.+=+- ---.+......+++++.++.+++++.- .|+ +--..-++++.++|++ .+..+++.+
T Consensus 314 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~-~ea~~~~k~ 392 (508)
T KOG1840|consen 314 EKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY-KEAEELYKK 392 (508)
T ss_pred HHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch-hHHHHHHHH
Confidence 433322222 222222233578889999888887653 332 2233447888899999 678888899
Q ss_pred HHHhc
Q 005381 167 MICNN 171 (699)
Q Consensus 167 ~I~~n 171 (699)
+|.+.
T Consensus 393 ai~~~ 397 (508)
T KOG1840|consen 393 AIQIL 397 (508)
T ss_pred HHHHH
Confidence 99865
No 283
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=71.67 E-value=1.6e+02 Score=32.34 Aligned_cols=172 Identities=13% Similarity=0.030 Sum_probs=111.3
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCC------CChHH
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF------KSYGA 107 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nP------Ksy~a 107 (699)
....+++ +.|..-.+.++..+|-+.++-..+..+..+.+. +.+-+..+.++-+..- .-++-
T Consensus 163 ll~~~d~-~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~------------~~~ll~~l~~L~ka~~l~~~e~~~le~ 229 (400)
T COG3071 163 LLNRRDY-PAARENVDQLLEMTPRHPEVLRLALRAYIRLGA------------WQALLAILPKLRKAGLLSDEEAARLEQ 229 (400)
T ss_pred HHhCCCc-hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc------------HHHHHHHHHHHHHccCCChHHHHHHHH
Confidence 3456777 789999999999999999999998888887754 4444444433332110 11112
Q ss_pred HHHHHHHHHhCC-----------------------------------CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHh
Q 005381 108 WHHRKWILSKGH-----------------------------------SSIDNELRLLDKFQKADSRNFHAWNYRRFVAAS 152 (699)
Q Consensus 108 W~hR~w~L~~~~-----------------------------------~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~ 152 (699)
|.+++-+=+... +..+++.+.+..+++..-+.- - .-.+..
T Consensus 230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L-~~~~~~ 304 (400)
T COG3071 230 QAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----L-CRLIPR 304 (400)
T ss_pred HHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----H-HHHHhh
Confidence 222211111100 245577777777776543222 1 111222
Q ss_pred c--CCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005381 153 M--NRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (699)
Q Consensus 153 l--~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~L 230 (699)
+ +.+ +.-++..+++++.+|.+...|.+.|.+..+- +.+.++=+++..|+...|+ .+.|.++..+
T Consensus 305 l~~~d~-~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~------------~~w~kA~~~leaAl~~~~s-~~~~~~la~~ 370 (400)
T COG3071 305 LRPGDP-EPLIKAAEKWLKQHPEDPLLLSTLGRLALKN------------KLWGKASEALEAALKLRPS-ASDYAELADA 370 (400)
T ss_pred cCCCCc-hHHHHHHHHHHHhCCCChhHHHHHHHHHHHh------------hHHHHHHHHHHHHHhcCCC-hhhHHHHHHH
Confidence 2 333 6778888999999999999999999887653 4578888888889987775 5678999999
Q ss_pred HcCcCCC
Q 005381 231 LDQTVRV 237 (699)
Q Consensus 231 l~~~~~~ 237 (699)
+++...+
T Consensus 371 ~~~~g~~ 377 (400)
T COG3071 371 LDQLGEP 377 (400)
T ss_pred HHHcCCh
Confidence 8876543
No 284
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=70.44 E-value=28 Score=36.91 Aligned_cols=98 Identities=9% Similarity=0.011 Sum_probs=71.3
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHH
Q 005381 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAW 108 (699)
Q Consensus 29 ~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW 108 (699)
.+....+..|+-.++|+.+++.+-...|......|....+...+++ |+++-..+..++..+|+++.+.
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~------------~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH------------YEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-------------HHHHHHHHHHHCCC-CCHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHhccCCHHHH
Confidence 3344556677777999999999888888888888888888887765 9999999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 005381 109 HHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (699)
Q Consensus 109 ~hR~w~L~~~~~~~~~EL~~~~k~L~~dpr 138 (699)
....-+-...+...+..-++...+-..+|.
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 987555444432223344566666667776
No 285
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=69.76 E-value=3.3e+02 Score=35.05 Aligned_cols=183 Identities=13% Similarity=0.112 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHH-HHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHH
Q 005381 19 AKAEKLRVLQSQFLHNHHNHIYSKEA-VELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESA 97 (699)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~ea-L~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~ 97 (699)
+..||+.-.++++.--..-| +++. .+.+++| ..+.+.|++.-.-.-++..-.+ +.++.++++..
T Consensus 1492 EeeEKLNiWiA~lNlEn~yG--~eesl~kVFeRA-cqycd~~~V~~~L~~iy~k~ek------------~~~A~ell~~m 1556 (1710)
T KOG1070|consen 1492 EEEEKLNIWIAYLNLENAYG--TEESLKKVFERA-CQYCDAYTVHLKLLGIYEKSEK------------NDEADELLRLM 1556 (1710)
T ss_pred hhHHHHHHHHHHHhHHHhhC--cHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHhhc------------chhHHHHHHHH
Confidence 44566776666664333333 3444 4455554 4456778887777777776654 78999999999
Q ss_pred HHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhc--CCChHHHHHHHHHHHHhccCch
Q 005381 98 LRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM--NRSEEDELKYTEDMICNNFSNY 175 (699)
Q Consensus 98 L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l--~~~~e~EL~~~~~~I~~n~sN~ 175 (699)
++..-....+|..-+-.|-+. ..-+.+-+++.+||+-=|+--|.=.-+.|+.-.+ |.. +.--..++..+..+|.--
T Consensus 1557 ~KKF~q~~~vW~~y~~fLl~~-ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa-eRGRtlfEgll~ayPKRt 1634 (1710)
T KOG1070|consen 1557 LKKFGQTRKVWIMYADFLLRQ-NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA-ERGRTLFEGLLSAYPKRT 1634 (1710)
T ss_pred HHHhcchhhHHHHHHHHHhcc-cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc-hhhHHHHHHHHhhCccch
Confidence 998888888997665555433 2445677889999999999666544444443332 344 555566678888899888
Q ss_pred HHHH-HHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhC-CCCchhHHHHHHHH
Q 005381 176 SAWH-NRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTD-PDDQSGWFYHLWLL 231 (699)
Q Consensus 176 SAW~-~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~d-P~d~SaW~Y~~~Ll 231 (699)
..|. |...-+.+..+ +..-..|.++|.+. +-..--.+|.+||-
T Consensus 1635 DlW~VYid~eik~~~~-------------~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1635 DLWSVYIDMEIKHGDI-------------KYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred hHHHHHHHHHHccCCH-------------HHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 8884 32222221111 12223444455442 33455677888875
No 286
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.62 E-value=20 Score=36.73 Aligned_cols=77 Identities=10% Similarity=-0.004 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKY 163 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~ 163 (699)
+-|.+++.+|.++|.+||....-|..|.-+--++ ..|+...+.|.++++++|.-.-+-+.-+-.+.....++ +.+..
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~-~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~-eaI~~ 100 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKL-KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD-EAIKV 100 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh-hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc-HHHHH
Confidence 4488889999999999999988888888877776 47888888899999999988777666655544444442 34444
No 287
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=69.21 E-value=20 Score=40.64 Aligned_cols=91 Identities=12% Similarity=-0.032 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKG--HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELK 162 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~--~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~ 162 (699)
..+..|+..+.+++..-|......-.|.-++.+- .+.---||.-|..++++||.-+.||.+-.-++..++++ .++++
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~-~eal~ 466 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRY-LEALS 466 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhH-HHhhh
Confidence 4577889999999999999988888887777642 23344799999999999999999999999999999998 78999
Q ss_pred HHHHHHHhccCchH
Q 005381 163 YTEDMICNNFSNYS 176 (699)
Q Consensus 163 ~~~~~I~~n~sN~S 176 (699)
+-..+....|+|.-
T Consensus 467 ~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 467 CHWALQMSFPTDVA 480 (758)
T ss_pred hHHHHhhcCchhhh
Confidence 98888888887764
No 288
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=66.90 E-value=14 Score=22.86 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC
Q 005381 176 SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220 (699)
Q Consensus 176 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d 220 (699)
.+|..++.++..++. +++++.++..++..+|.+
T Consensus 2 ~~~~~~a~~~~~~~~------------~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGD------------YDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhh------------HHHHHHHHHHHHccCCCC
Confidence 467777777776644 799999999999998864
No 289
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=65.80 E-value=14 Score=22.98 Aligned_cols=33 Identities=24% Similarity=0.061 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC
Q 005381 60 TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (699)
Q Consensus 60 taWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs 104 (699)
.+|+.++.++...++ ++++...+..+++.+|.+
T Consensus 2 ~~~~~~a~~~~~~~~------------~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGD------------YDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhh------------HHHHHHHHHHHHccCCCC
Confidence 467888888887754 899999999999998863
No 290
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=65.65 E-value=34 Score=35.72 Aligned_cols=83 Identities=18% Similarity=0.047 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhC
Q 005381 22 EKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN 101 (699)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~n 101 (699)
+-+..+.+-..++.....--+.|+...+.+|..||+...-|--||.+..+++. +.-++.-++..+...
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c------------~~vAl~dl~~~~~~~ 245 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC------------YHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC------------chhhHHHHHHHHHhC
Confidence 33334444444444455555899999999999999999999999999999976 778899999989999
Q ss_pred CCChHHHHHHHHHHH
Q 005381 102 FKSYGAWHHRKWILS 116 (699)
Q Consensus 102 PKsy~aW~hR~w~L~ 116 (699)
|+...+=.-|.-+.+
T Consensus 246 P~~~~a~~ir~~l~~ 260 (269)
T COG2912 246 PDDPIAEMIRAQLLE 260 (269)
T ss_pred CCchHHHHHHHHHHH
Confidence 988887655555443
No 291
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.46 E-value=39 Score=36.34 Aligned_cols=90 Identities=9% Similarity=0.045 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHh---CCCChHH-HHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHH
Q 005381 87 LDEELRVVESALRQ---NFKSYGA-WHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELK 162 (699)
Q Consensus 87 ~~eEL~~~~~~L~~---nPKsy~a-W~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~ 162 (699)
|..+..+|...|+. ||+--.+ +..|.-+-..+ +.|..+|.-|.+++.++|.+--|..--.-++-.++++ .+.+.
T Consensus 97 yk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l-~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~-~~a~n 174 (390)
T KOG0551|consen 97 YKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL-GNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERF-AEAVN 174 (390)
T ss_pred HHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHH-HHHHH
Confidence 66666666666643 2332222 33333332222 4566666666666666666666643334444444443 33444
Q ss_pred HHHHHHHhccCchHHH
Q 005381 163 YTEDMICNNFSNYSAW 178 (699)
Q Consensus 163 ~~~~~I~~n~sN~SAW 178 (699)
+|+..+.++-.+-.|-
T Consensus 175 w~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 175 WCEEGLQIDDEAKKAI 190 (390)
T ss_pred HHhhhhhhhHHHHHHH
Confidence 4444444444444443
No 292
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=65.30 E-value=18 Score=38.44 Aligned_cols=100 Identities=16% Similarity=0.124 Sum_probs=72.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHhCCCChHHHH
Q 005381 48 STKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK-WILSKGHSSIDNEL 126 (699)
Q Consensus 48 ~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~-w~L~~~~~~~~~EL 126 (699)
+-+.-..-|.+.+.|-.--..+...+ .|.+-=..|..||+.+|.+...|-+-+ +-+.. .+.++..-
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k------------~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~-~ani~s~R 162 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKK------------MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFE-IANIESSR 162 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhcCCCCceeeeeeccchhhh-hccHHHHH
Confidence 33444567888899986555555443 377777899999999999999998743 33332 36788888
Q ss_pred HHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHh
Q 005381 127 RLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICN 170 (699)
Q Consensus 127 ~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~ 170 (699)
..+.+.|+++|++..-|.- |-.-|+.|.++.|..
T Consensus 163 a~f~~glR~N~~~p~iw~e----------yfr~El~yiTKL~~R 196 (435)
T COG5191 163 AMFLKGLRMNSRSPRIWIE----------YFRMELMYITKLINR 196 (435)
T ss_pred HHHHhhhccCCCCchHHHH----------HHHHHHHHHHHHHhh
Confidence 8999999999999998861 113488888887753
No 293
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.14 E-value=4.8 Score=26.37 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=9.5
Q ss_pred cccceeecccCCCCCC
Q 005381 577 QLLSCLNLSNNILGSF 592 (699)
Q Consensus 577 ~~L~~L~Ls~N~l~~l 592 (699)
.+|+.|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666554
No 294
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=64.13 E-value=18 Score=23.81 Aligned_cols=32 Identities=13% Similarity=0.011 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC
Q 005381 61 AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (699)
Q Consensus 61 aWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs 104 (699)
|....+++....+. +++++..++.++..+|+|
T Consensus 2 a~~~~a~~~~~~g~------------~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGD------------YDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCH------------HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccC------------HHHHHHHHHHHHHHCcCC
Confidence 44556666666644 899999999999999986
No 295
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.24 E-value=2e+02 Score=30.20 Aligned_cols=131 Identities=15% Similarity=0.072 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhCCCChHHHHHHHHH----HHHhCCCChhhhhHHHHHHHhcC--CChHH
Q 005381 87 LDEELRVVESALRQNF-KSYGAWHHRKWILSKGHSSIDNELRLLDK----FQKADSRNFHAWNYRRFVAASMN--RSEED 159 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nP-Ksy~aW~hR~w~L~~~~~~~~~EL~~~~k----~L~~dprN~haW~yR~~vl~~l~--~~~e~ 159 (699)
|.--++.+.++++.+| ..+..-.--+-+--+. ++.+.+-.++++ .-+++.--+.---+|.-.+-.++ .+ .+
T Consensus 193 y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~-GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~-a~ 270 (366)
T KOG2796|consen 193 YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQI-GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNF-AE 270 (366)
T ss_pred hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccch-HH
Confidence 5566777777777774 3333333223222222 343333233331 12233222222223322222232 23 44
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCC---CchhHHHHHHHH
Q 005381 160 ELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD---DQSGWFYHLWLL 231 (699)
Q Consensus 160 EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~---d~SaW~Y~~~Ll 231 (699)
|.-++++.++.|++|.-|-+.+..++.-+++ +.++++-+..+...+|. ++|.-+-++-+.
T Consensus 271 a~r~~~~i~~~D~~~~~a~NnKALcllYlg~------------l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 271 AHRFFTEILRMDPRNAVANNNKALCLLYLGK------------LKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred HHHHHhhccccCCCchhhhchHHHHHHHHHH------------HHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 5566677888888888888888877777655 67788888888888886 455555555444
No 296
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=62.76 E-value=1.9e+02 Score=31.86 Aligned_cols=79 Identities=9% Similarity=0.006 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHH
Q 005381 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~ 166 (699)
...=++..+..++.+|.++..|..-|.+.-+. ..|.++-++++.+++.-|. .+.|.+.+.++..+|.+ ++.-+...+
T Consensus 310 ~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~-~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~-~~A~~~r~e 386 (400)
T COG3071 310 PEPLIKAAEKWLKQHPEDPLLLSTLGRLALKN-KLWGKASEALEAALKLRPS-ASDYAELADALDQLGEP-EEAEQVRRE 386 (400)
T ss_pred chHHHHHHHHHHHhCCCChhHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCCh-HHHHHHHHH
Confidence 34556677778888888888888877777655 4778888888888877764 44577888888888876 334444344
Q ss_pred HH
Q 005381 167 MI 168 (699)
Q Consensus 167 ~I 168 (699)
++
T Consensus 387 ~L 388 (400)
T COG3071 387 AL 388 (400)
T ss_pred HH
Confidence 33
No 297
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=62.44 E-value=4.9 Score=26.32 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=9.5
Q ss_pred ccCEEEccCCCCCCCcC
Q 005381 556 WVQMLDLSHNELRSIEG 572 (699)
Q Consensus 556 ~L~~LdLS~N~L~~l~~ 572 (699)
+|+.|+.|+|+|+++|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45555555555555554
No 298
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=61.65 E-value=2.2e+02 Score=30.17 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCc-----cchhchHHHHHHHHHHHHHhCCC
Q 005381 158 EDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF-----VSKEKVLPDEYEFVHQAIFTDPD 219 (699)
Q Consensus 158 e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~-----~~~~~~~~eeL~~~~~ai~~dP~ 219 (699)
++.++.+.++++.+|..+.+|++-+.....+......+. ....+....++++|-+++...|.
T Consensus 275 ~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 275 DEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 567889999999999999999999999888876433221 13455678899999999998887
No 299
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=60.69 E-value=25 Score=33.15 Aligned_cols=48 Identities=17% Similarity=0.060 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhc
Q 005381 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLT 74 (699)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~ 74 (699)
.+++...+...+|+| +-|+++++.++..+|++-.+-..|..++..++.
T Consensus 72 ~vl~~A~~~~~~gd~-~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 72 KVLERAQAALAAGDY-QWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHCT-H-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 455666667788998 899999999999999999999999999999975
No 300
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=58.35 E-value=2.7e+02 Score=30.12 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHhC--CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGA--WHHRKWILSKG--HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDE 160 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~a--W~hR~w~L~~~--~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~E 160 (699)
+.++++++.-++..+..++.|.+ =++-|-+-... ....+++++.+.|+++.||++..|=--.|-+.-..|.+ +..
T Consensus 155 reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y-~~A 233 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDY-QKA 233 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch-HHH
Confidence 56899999999999888877754 33334333322 24678999999999999999999988888887778888 788
Q ss_pred HHHHHHHHHhccCch
Q 005381 161 LKYTEDMICNNFSNY 175 (699)
Q Consensus 161 L~~~~~~I~~n~sN~ 175 (699)
++.....++.||.--
T Consensus 234 V~~~e~v~eQn~~yl 248 (389)
T COG2956 234 VEALERVLEQNPEYL 248 (389)
T ss_pred HHHHHHHHHhChHHH
Confidence 998899999998644
No 301
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.73 E-value=1.5e+02 Score=30.79 Aligned_cols=63 Identities=13% Similarity=-0.015 Sum_probs=40.9
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChH-HHHHHHHHHHHhccCchHHHHHHHHH
Q 005381 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEE-DELKYTEDMICNNFSNYSAWHNRSLL 184 (699)
Q Consensus 120 ~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e-~EL~~~~~~I~~n~sN~SAW~~R~~l 184 (699)
+.|-+.++-|..+|+.+|+|--|..-|+-+ +.+.+.+ ++-+-+.++++.+|+-.|+-.---.+
T Consensus 244 ~e~yevleh~seiL~~~~~nvKA~frRakA--haa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~ 307 (329)
T KOG0545|consen 244 EEYYEVLEHCSEILRHHPGNVKAYFRRAKA--HAAVWNEAEAKADLQKVLELDPSLASVVSRELRL 307 (329)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHH--HHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 466678888888888888888887766654 2333322 23334478888888877775443333
No 302
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=56.36 E-value=20 Score=23.54 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 005381 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (699)
Q Consensus 107 aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dpr 138 (699)
|+.+.+++..+. +.++++++.++++++..|.
T Consensus 2 a~~~~a~~~~~~-g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKL-GDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHH-CHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHc-cCHHHHHHHHHHHHHHCcC
Confidence 455666666654 4677777777777777775
No 303
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=56.27 E-value=1e+02 Score=27.82 Aligned_cols=98 Identities=11% Similarity=0.044 Sum_probs=71.0
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHH---HHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNY---RKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHR 111 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~---R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR 111 (699)
...|++ -+||++++.++..+++.-.+|.. .|.++..+.. ...+|+.-..-+...++++.++....|.+...-+.-
T Consensus 7 ~~rGnh-iKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~-~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~l 84 (111)
T PF04781_consen 7 FARGNH-IKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAK-KTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFEL 84 (111)
T ss_pred HHccCH-HHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHH-hccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHH
Confidence 456777 79999999999999999988763 3567777755 234666666778899999999999999995554443
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHh
Q 005381 112 KWILSKGHSSIDNELRLLDKFQKA 135 (699)
Q Consensus 112 ~w~L~~~~~~~~~EL~~~~k~L~~ 135 (699)
+--+... ..|++.+.-|.++|.+
T Consensus 85 a~~l~s~-~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 85 ASQLGSV-KYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHhhhH-HHHHHHHHHHHHHhcc
Confidence 3332211 2467777777777764
No 304
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.71 E-value=3.2e+02 Score=29.76 Aligned_cols=112 Identities=15% Similarity=0.067 Sum_probs=76.9
Q ss_pred CCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHh-CCCChHH-HHHHH--
Q 005381 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ-NFKSYGA-WHHRK-- 112 (699)
Q Consensus 37 ~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~-nPKsy~a-W~hR~-- 112 (699)
.|++ -+|-...+++|.-.|.+.-+|++-..+-..++. ...-...+++++-. ||.-+.. +.|-.
T Consensus 116 ~g~~-h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~------------~~~~k~ai~kIip~wn~dlp~~sYv~Gmya 182 (491)
T KOG2610|consen 116 RGKH-HEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGN------------QIGKKNAIEKIIPKWNADLPCYSYVHGMYA 182 (491)
T ss_pred cccc-cHHHHHHHHHHHhCchhhhhhhhhhhHHHhccc------------hhhhhhHHHHhccccCCCCcHHHHHHHHHH
Confidence 4566 466677999999999999999988877776665 23345666777765 6655432 22322
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHH
Q 005381 113 WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKY 163 (699)
Q Consensus 113 w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~ 163 (699)
+.|... +.|+++=+.-++++++++.+-.|=+-+.-|+++-++. .+..+|
T Consensus 183 FgL~E~-g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~-Keg~eF 231 (491)
T KOG2610|consen 183 FGLEEC-GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRH-KEGKEF 231 (491)
T ss_pred hhHHHh-ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchh-hhHHHH
Confidence 333344 5788888889999999997765555567778777776 445555
No 305
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=53.52 E-value=50 Score=25.55 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=20.3
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHH
Q 005381 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRF 148 (699)
Q Consensus 117 ~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~ 148 (699)
++ +.|+++..+++.+|+++|.|-.|=.-+.-
T Consensus 13 kl-~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 13 KL-GEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HT-T-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred Hh-hhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 44 57788888888888888888777554443
No 306
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=53.11 E-value=91 Score=32.77 Aligned_cols=111 Identities=14% Similarity=0.223 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 005381 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (699)
Q Consensus 107 aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~ 186 (699)
+|-+-+-.+.+. ...+.+-..+.++++....++|.|-.-+.+=.+.+...+.+...++.+++..|.+...|..--..+.
T Consensus 3 v~i~~m~~~~r~-~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRT-EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 565555555544 2467888899999866677899988665554454555455899999999999999988854333333
Q ss_pred HhhhhhccCccchhchHHHHHHHHHHHHHhCCCCc-hhHHHHHHH
Q 005381 187 NLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ-SGWFYHLWL 230 (699)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~-SaW~Y~~~L 230 (699)
.++. .+.+-..+.+++..-|.+. +.=.|.+|+
T Consensus 82 ~~~d------------~~~aR~lfer~i~~l~~~~~~~~iw~~~i 114 (280)
T PF05843_consen 82 KLND------------INNARALFERAISSLPKEKQSKKIWKKFI 114 (280)
T ss_dssp HTT-------------HHHHHHHHHHHCCTSSCHHHCHHHHHHHH
T ss_pred HhCc------------HHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 3432 4666777888887777776 444444454
No 307
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=52.07 E-value=23 Score=24.56 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHH--HhCCCC
Q 005381 177 AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAI--FTDPDD 220 (699)
Q Consensus 177 AW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai--~~dP~d 220 (699)
||.+.+.+....+. ++++++++.+++ ..+|+|
T Consensus 1 al~~Lg~~~~~~g~------------~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQGD------------YEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHHHCT-------------HHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHcCC------------HHHHHHHHHHHHHhcccccC
Confidence 56677777776644 899999999944 555554
No 308
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.98 E-value=1.6e+02 Score=30.82 Aligned_cols=126 Identities=13% Similarity=0.066 Sum_probs=80.6
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCchHHHHH-HHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHH----hCCCChHHHHH
Q 005381 36 HNHIYSKEAVELSTKLLETNPELYTAWNY-RKLAVQHKLTENDSDPDSLKSILDEELRVVESALR----QNFKSYGAWHH 110 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~ytaWn~-R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~----~nPKsy~aW~h 110 (699)
.-+|| .=.++++.+++..+|+--++.-- -+++-.+.+. .+.+=..++.+=+ .+---...-.|
T Consensus 189 G~kEy-~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD------------~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 189 GMKEY-VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD------------IKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred cchhh-hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc------------HHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 34666 56678888999999766666432 2344444432 2222222222211 11111222333
Q ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCch
Q 005381 111 RKWILSKG-HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (699)
Q Consensus 111 R~w~L~~~-~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~ 175 (699)
|.-.+-.+ ...+.+|..++++++..|++|..|=+.+..|+-.+++. .++++-.+.+..+.|.-+
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l-~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL-KDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH-HHHHHHHHHHhccCCccc
Confidence 33222222 13678999999999999999999999999999989887 689999899999998754
No 309
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=51.73 E-value=1.5e+02 Score=27.33 Aligned_cols=52 Identities=25% Similarity=0.167 Sum_probs=39.3
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHH
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESAL 98 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L 98 (699)
....|++ ++|+....+++..+|-+-.+|...=.++...++ ..++++.|+.+-
T Consensus 72 ~~~~~~~-~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~------------~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 72 LLEAGDY-EEALRLLQRALALDPYDEEAYRLLMRALAAQGR------------RAEALRVYERYR 123 (146)
T ss_dssp HHHTT-H-HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-------------HHHHHHHHHHHH
T ss_pred HHhccCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC------------HHHHHHHHHHHH
Confidence 3455666 899999999999999999999998888888865 566676666543
No 310
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=51.41 E-value=6.7 Score=24.64 Aligned_cols=13 Identities=38% Similarity=0.549 Sum_probs=5.5
Q ss_pred cccCEEEccCCCC
Q 005381 555 LWVQMLDLSHNEL 567 (699)
Q Consensus 555 ~~L~~LdLS~N~L 567 (699)
++|+.|+|++|.|
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3455555555544
No 311
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=49.63 E-value=11 Score=24.74 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=18.0
Q ss_pred ccchHHHhhcCCccccccCcc
Q 005381 677 EKFKSFLIKVLPGLKWLDGEQ 697 (699)
Q Consensus 677 ~~~~~~~~~~l~~L~~LD~~~ 697 (699)
+.++..++..+|+|+.||...
T Consensus 2 ~~YR~~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 2 AHYREKVIRLLPQLRKLDXXX 22 (26)
T ss_pred ccHHHHHHHHCCccceecccc
Confidence 467888999999999999864
No 312
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.45 E-value=1.1e+02 Score=31.75 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005381 159 DELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 159 ~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll 231 (699)
+.++-|...+..+|.|.-|++-|+..-...-. ..++-+-+.+++..||.-.|+-.--.-++
T Consensus 248 evleh~seiL~~~~~nvKA~frRakAhaa~Wn------------~~eA~~D~~~vL~ldpslasvVsrElr~l 308 (329)
T KOG0545|consen 248 EVLEHCSEILRHHPGNVKAYFRRAKAHAAVWN------------EAEAKADLQKVLELDPSLASVVSRELRLL 308 (329)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhhcC------------HHHHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 57888999999999999999999876444322 36777788899999998887765433333
No 313
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=48.28 E-value=43 Score=25.95 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=31.1
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhh
Q 005381 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHK 72 (699)
Q Consensus 32 ~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l 72 (699)
.....-|+| ++|+.+.+.+|++.|++-+|=..+..+-...
T Consensus 9 ig~ykl~~Y-~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 9 IGHYKLGEY-EKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHTT-H-HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhH-HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 445678889 7999999999999999999987777665544
No 314
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.16 E-value=2e+02 Score=30.71 Aligned_cols=163 Identities=14% Similarity=0.035 Sum_probs=80.5
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w 113 (699)
..+...| .+|+++..--.+.+|..-.+...-+.|.-+..+ |..+-++++++-...|+-.+-=-|-..
T Consensus 20 lI~d~ry-~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~------------f~~AA~CYeQL~ql~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 20 LIRDARY-ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE------------FALAAECYEQLGQLHPELEQYRLYQAQ 86 (459)
T ss_pred HHHHhhH-HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 3344444 566777777777777666666666666655533 677777777777777765544333333
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchH--HHHHHHHHHHHhhhh
Q 005381 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYS--AWHNRSLLLSNLLKR 191 (699)
Q Consensus 114 ~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~S--AW~~R~~ll~~l~~~ 191 (699)
-|-+. ..+..+|.....+.+. .+...+..-++..-.|.++.+.-+...++.-|+... .-.+-+-
T Consensus 87 SLY~A-~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gC-------- 152 (459)
T KOG4340|consen 87 SLYKA-CIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGC-------- 152 (459)
T ss_pred HHHHh-cccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchh--------
Confidence 33333 3555666555444322 122222222222222223333334444444443111 1111121
Q ss_pred hccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHH
Q 005381 192 KVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHL 228 (699)
Q Consensus 192 ~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~ 228 (699)
...+++.+++++..++.|+.. .+-++.--|--
T Consensus 153 ----llykegqyEaAvqkFqaAlqv-sGyqpllAYni 184 (459)
T KOG4340|consen 153 ----LLYKEGQYEAAVQKFQAALQV-SGYQPLLAYNL 184 (459)
T ss_pred ----eeeccccHHHHHHHHHHHHhh-cCCCchhHHHH
Confidence 123445688888888877754 23344444433
No 315
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.09 E-value=1.7e+02 Score=31.72 Aligned_cols=102 Identities=11% Similarity=-0.017 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHH----HHHHHhcCCChHHHHH
Q 005381 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYR----RFVAASMNRSEEDELK 162 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR----~~vl~~l~~~~e~EL~ 162 (699)
+-++-..-+++|...|+..-+|..---+-..+ +.-+--...++|++-.=.-+..|..|- .|.+...|.|++.|-
T Consensus 119 ~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~-G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk- 196 (491)
T KOG2610|consen 119 HHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYN-GNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEK- 196 (491)
T ss_pred ccHHHHHHHHHHHhCchhhhhhhhhhhHHHhc-cchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHH-
Confidence 34555667899999999999997654444433 344455566667665522233444443 566788899965554
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHhhh
Q 005381 163 YTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (699)
Q Consensus 163 ~~~~~I~~n~sN~SAW~~R~~ll~~l~~ 190 (699)
-.++++++|+.|--|=|-...++..-++
T Consensus 197 ~A~ralqiN~~D~Wa~Ha~aHVlem~~r 224 (491)
T KOG2610|consen 197 QADRALQINRFDCWASHAKAHVLEMNGR 224 (491)
T ss_pred HHHhhccCCCcchHHHHHHHHHHHhcch
Confidence 4499999999998888888888775544
No 316
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=45.44 E-value=15 Score=24.18 Aligned_cols=13 Identities=46% Similarity=0.567 Sum_probs=7.1
Q ss_pred ccCEEEccCCCCC
Q 005381 556 WVQMLDLSHNELR 568 (699)
Q Consensus 556 ~L~~LdLS~N~L~ 568 (699)
+|+.|||++|.|+
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 317
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.05 E-value=1.4e+02 Score=32.39 Aligned_cols=95 Identities=17% Similarity=0.060 Sum_probs=73.0
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCch----HHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHH
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELY----TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWH 109 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~y----taWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~ 109 (699)
....+.| ..|..+|.+.|..+..+. -.++.|.-+-..++. |..+|.-|.+++..+|++.-|.+
T Consensus 91 ~fK~Kry-k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N------------yRs~l~Dcs~al~~~P~h~Ka~~ 157 (390)
T KOG0551|consen 91 YFKEKRY-KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN------------YRSALNDCSAALKLKPTHLKAYI 157 (390)
T ss_pred HHHhhhH-HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH------------HHHHHHHHHHHHhcCcchhhhhh
Confidence 3445555 789999999999977654 456677777777754 99999999999999999999986
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCChhh
Q 005381 110 HRKWILSKGHSSIDNELRLLDKFQKADSRNFHA 142 (699)
Q Consensus 110 hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~ha 142 (699)
.-.-++-.+ ..+++++..|+..+.+|..+-.|
T Consensus 158 R~Akc~~eL-e~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 158 RGAKCLLEL-ERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred hhhHHHHHH-HHHHHHHHHHhhhhhhhHHHHHH
Confidence 666666666 46788888888887776654443
No 318
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.99 E-value=2.2e+02 Score=29.77 Aligned_cols=105 Identities=14% Similarity=0.022 Sum_probs=70.0
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCCh-
Q 005381 27 LQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY- 105 (699)
Q Consensus 27 ~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy- 105 (699)
+.++.+.....|.| .+|-+.+..-+..-|+..-+=|-+-|+-+.+.. ++.|+++-..+..+.+..||+.
T Consensus 144 ~Y~~A~~~~ksgdy-~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~---------qg~y~~Aa~~f~~~~k~~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDY-AEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA---------QGDYEDAAYIFARVVKDYPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh---------cccchHHHHHHHHHHHhCCCCCC
Confidence 34445555566676 688888888888888876444444443333322 1348888888888888666654
Q ss_pred --HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhh
Q 005381 106 --GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHA 142 (699)
Q Consensus 106 --~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~ha 142 (699)
.+-.--+-++..+ +.-+++-..+..+++..|..-.|
T Consensus 214 ApdallKlg~~~~~l-~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 214 APDALLKLGVSLGRL-GNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred ChHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHCCCCHHH
Confidence 4455556666665 46788888888888888887665
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=41.81 E-value=1.6e+02 Score=31.24 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=49.2
Q ss_pred CCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCc-----hhhhhhHHHHHHHHHHHHHhCCC
Q 005381 39 IYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDP-----DSLKSILDEELRVVESALRQNFK 103 (699)
Q Consensus 39 ~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~-----~~~~~~~~eEL~~~~~~L~~nPK 103 (699)
+-.++++..+..++..+|..+.+|++-+.....+.......+ +........++..|-+++...++
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 334799999999999999999999988877776654221111 23455677788899999988888
No 320
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=40.88 E-value=2e+02 Score=31.30 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHH
Q 005381 19 AKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPEL---YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVE 95 (699)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~---ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~ 95 (699)
.-.+|....++-++.....|-..+|++...+.++..-|+. ...|-.+.++....+. +++-|.+|+
T Consensus 97 ~~t~kvn~tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~------------~e~vi~iyE 164 (353)
T PF15297_consen 97 LFTEKVNKTLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGP------------IEDVIAIYE 164 (353)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCC------------HHHHHHHHH
Confidence 3677777888889999999999999999999999999975 5778888887766543 677888999
Q ss_pred HHHHhCCC
Q 005381 96 SALRQNFK 103 (699)
Q Consensus 96 ~~L~~nPK 103 (699)
.|+.....
T Consensus 165 eAi~agAq 172 (353)
T PF15297_consen 165 EAILAGAQ 172 (353)
T ss_pred HHHHcCCC
Confidence 88875554
No 321
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.82 E-value=5.4e+02 Score=28.20 Aligned_cols=114 Identities=9% Similarity=0.025 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHH
Q 005381 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~ 166 (699)
|++++..+..+...+--....|.+-.-+...+ +.|.++-.. ...-|++.-+-.--.-+..+++. |+++.-+..
T Consensus 73 Y~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL-g~Y~eA~~~----~~ka~k~pL~~RLlfhlahklnd--Ek~~~~fh~ 145 (557)
T KOG3785|consen 73 YEEALNVYTFLMNKDDAPAELGVNLACCKFYL-GQYIEAKSI----AEKAPKTPLCIRLLFHLAHKLND--EKRILTFHS 145 (557)
T ss_pred HHHHHHHHHHHhccCCCCcccchhHHHHHHHH-HHHHHHHHH----HhhCCCChHHHHHHHHHHHHhCc--HHHHHHHHH
Confidence 89999999988887777888888877666655 456655433 33446665542222223333433 444433333
Q ss_pred HHHhccCch----HHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHH
Q 005381 167 MICNNFSNY----SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFY 226 (699)
Q Consensus 167 ~I~~n~sN~----SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y 226 (699)
.+..-..+. |. ||-+ .-|+++|+.++..+..+|+-...=.|
T Consensus 146 ~LqD~~EdqLSLAsv-hYmR------------------~HYQeAIdvYkrvL~dn~ey~alNVy 190 (557)
T KOG3785|consen 146 SLQDTLEDQLSLASV-HYMR------------------MHYQEAIDVYKRVLQDNPEYIALNVY 190 (557)
T ss_pred HHhhhHHHHHhHHHH-HHHH------------------HHHHHHHHHHHHHHhcChhhhhhHHH
Confidence 332211111 11 1111 23678888888888777776554333
No 322
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=39.32 E-value=2.4e+02 Score=32.13 Aligned_cols=92 Identities=11% Similarity=0.056 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHH
Q 005381 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~ 166 (699)
-..-+..+..++.+.+-....|..---...+. ..+.+=-..|.++|..+|.|...|-|-+.-.-..+...+..-+.+.+
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~-~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKK-KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 45567889999999999999996544444433 23566667899999999999999999866555555545778888899
Q ss_pred HHHhccCchHHHH
Q 005381 167 MICNNFSNYSAWH 179 (699)
Q Consensus 167 ~I~~n~sN~SAW~ 179 (699)
.++.||.+.-.|.
T Consensus 166 gLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 166 GLRFNPDSPKLWK 178 (568)
T ss_pred HhhcCCCChHHHH
Confidence 9999999999883
No 323
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=39.26 E-value=81 Score=33.59 Aligned_cols=66 Identities=11% Similarity=-0.002 Sum_probs=47.5
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 005381 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (699)
Q Consensus 120 ~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~ 186 (699)
+..+++..+++.++.++|+|..+..--|.+.++-+.. -++=.|+.+++.++|+|..|..+|..-.+
T Consensus 130 Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~i-v~ADq~Y~~ALtisP~nseALvnR~RT~p 195 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEI-VEADQCYVKALTISPGNSEALVNRARTTP 195 (472)
T ss_pred cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhh-HhhhhhhheeeeeCCCchHHHhhhhccch
Confidence 5678888888888888888888766555554443322 34455778888888988888888876544
No 324
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=38.63 E-value=39 Score=23.36 Aligned_cols=26 Identities=4% Similarity=0.104 Sum_probs=14.8
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005381 108 WHHRKWILSKGHSSIDNELRLLDKFQK 134 (699)
Q Consensus 108 W~hR~w~L~~~~~~~~~EL~~~~k~L~ 134 (699)
|..-+-+..+. +.+++++++|+++|.
T Consensus 2 l~~Lg~~~~~~-g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQ-GDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHC-T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 44445555555 467777777777443
No 325
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.44 E-value=6.8e+02 Score=28.63 Aligned_cols=186 Identities=12% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHh--------------cCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhh
Q 005381 20 KAEKLRVLQSQFLHNH--------------HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKS 85 (699)
Q Consensus 20 ~~~~~~~~~~~~~~~~--------------~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~ 85 (699)
+..|=+++.++++.+| +++++ ++|=..++.+|..+..+.|.|---..+=.....
T Consensus 55 q~RkRkefEd~irrnR~~~~~WikYaqwEesq~e~-~RARSv~ERALdvd~r~itLWlkYae~Emknk~----------- 122 (677)
T KOG1915|consen 55 QLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEI-QRARSVFERALDVDYRNITLWLKYAEFEMKNKQ----------- 122 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcccccchHHHHHHHHHHhhhh-----------
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC---------------------------------------------
Q 005381 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHS--------------------------------------------- 120 (699)
Q Consensus 86 ~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~--------------------------------------------- 120 (699)
+..+-.+.++|+..=|.--+.|+---.+=..++.
T Consensus 123 -vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV 201 (677)
T KOG1915|consen 123 -VNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFV 201 (677)
T ss_pred -HhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q ss_pred ---------------------------------------------------------ChHHHHHHHHHHHHhCCCChhhh
Q 005381 121 ---------------------------------------------------------SIDNELRLLDKFQKADSRNFHAW 143 (699)
Q Consensus 121 ---------------------------------------------------------~~~~EL~~~~k~L~~dprN~haW 143 (699)
.++++-..|.-+|+.=|++-.-=
T Consensus 202 ~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raee 281 (677)
T KOG1915|consen 202 LVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEE 281 (677)
T ss_pred eecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q ss_pred hHHHHHHHhcCCCh----------HHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHH
Q 005381 144 NYRRFVAASMNRSE----------EDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQA 213 (699)
Q Consensus 144 ~yR~~vl~~l~~~~----------e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~a 213 (699)
-|+.++.-.-..-+ ..-++| ++.+..||.||.+|.---.|....+. -++=-+-+.+|
T Consensus 282 L~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY-E~~v~~np~nYDsWfdylrL~e~~g~------------~~~Ire~yErA 348 (677)
T KOG1915|consen 282 LYKKYTAFEKQFGDKEGIEDAIVGKRKFQY-EKEVSKNPYNYDSWFDYLRLEESVGD------------KDRIRETYERA 348 (677)
T ss_pred HHHHHHHHHHHhcchhhhHHHHhhhhhhHH-HHHHHhCCCCchHHHHHHHHHHhcCC------------HHHHHHHHHHH
Q ss_pred HHhCCCCchhHHHHHHHH
Q 005381 214 IFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 214 i~~dP~d~SaW~Y~~~Ll 231 (699)
|.--|--+.-=+.+|++.
T Consensus 349 Ianvpp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 349 IANVPPASEKRYWRRYIY 366 (677)
T ss_pred HccCCchhHHHHHHHHHH
No 326
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=36.58 E-value=3.2 Score=47.27 Aligned_cols=127 Identities=24% Similarity=0.246 Sum_probs=77.0
Q ss_pred CCCcHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCccc-----
Q 005381 475 ISHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLG----- 549 (699)
Q Consensus 475 ~~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~----- 549 (699)
...+.+.+.....++++|++.|... .+.... +. ..+...+.....+.. +.|+++.++...
T Consensus 161 ~~~l~~~L~~~~~l~~l~l~~n~l~-~~g~~~-l~------~~l~~~~~~~~~le~-------L~L~~~~~t~~~c~~l~ 225 (478)
T KOG4308|consen 161 AAPLAAVLEKNEHLTELDLSLNGLI-ELGLLV-LS------QALESAASPLSSLET-------LKLSRCGVTSSSCALLD 225 (478)
T ss_pred hHHHHHHHhcccchhHHHHHhcccc-hhhhHH-Hh------hhhhhhhcccccHHH-------HhhhhcCcChHHHHHHH
Confidence 3555667777888999999988843 111110 00 111111112222233 777777776322
Q ss_pred -CCCCCcc-cCEEEccCCCCCCC-----cC-Cccc-cccceeecccCCCCCCCC---CccccccccccccccccccCCC
Q 005381 550 -SFDKLLW-VQMLDLSHNELRSI-----EG-LEAL-QLLSCLNLSNNILGSFTA---LEPIRQLKSLRALNISYNEIGA 616 (699)
Q Consensus 550 -~l~~L~~-L~~LdLS~N~L~~l-----~~-l~~L-~~L~~L~Ls~N~l~~l~~---~~~l~~l~~L~~L~Ls~N~I~~ 616 (699)
.+...+. +..|++.+|+++.. .+ +..+ ..++.++++.|.|+.... ...+..++.++.+.++.|.+..
T Consensus 226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 4555555 67799999998643 22 6666 567899999999876421 1235567788999999998865
No 327
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=34.10 E-value=6.6e+02 Score=27.51 Aligned_cols=112 Identities=19% Similarity=0.224 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHh
Q 005381 21 AEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100 (699)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~ 100 (699)
...|++++..|....... |.++|- .+|..+|=|..+.-.=..+....+ +.......++.+|-.+++++..
T Consensus 7 s~~Y~~~q~~F~~~v~~~--Dp~~l~---~ll~~~PyHidtLlqls~v~~~~g-----d~~~A~~lleRALf~~e~~~~~ 76 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSH--DPNALI---NLLQKNPYHIDTLLQLSEVYRQQG-----DHAQANDLLERALFAFERAFHP 76 (360)
T ss_pred CHHHHHHHHHHHHHHHcc--CHHHHH---HHHHHCCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999998888777 445554 567999999999888888777664 3455567778888888877742
Q ss_pred -------CCCC------hHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHhCCC-Chhh
Q 005381 101 -------NFKS------YGAWHHRKWILS--------KGHSSIDNELRLLDKFQKADSR-NFHA 142 (699)
Q Consensus 101 -------nPKs------y~aW~hR~w~L~--------~~~~~~~~EL~~~~k~L~~dpr-N~ha 142 (699)
++.+ |.--.+|...+. ...+-+..++++|.-.+.+||. +..+
T Consensus 77 ~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g 140 (360)
T PF04910_consen 77 SFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG 140 (360)
T ss_pred HhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence 2222 111122322221 0125789999999999999998 5544
No 328
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=32.93 E-value=19 Score=40.28 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=6.7
Q ss_pred CccEEEecCCCC
Q 005381 663 NLTQFDIVGNAI 674 (699)
Q Consensus 663 ~L~~LdLs~N~l 674 (699)
+|+.|+|+++..
T Consensus 296 ~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 296 SLRELDLSGCHG 307 (482)
T ss_pred cccEEeeecCcc
Confidence 456666665544
No 329
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=32.63 E-value=7.2e+02 Score=27.48 Aligned_cols=171 Identities=12% Similarity=0.095 Sum_probs=89.8
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHh----CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHH-HhCCCCh
Q 005381 31 FLHNHHNHIYSKEAVELSTKLLET----NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESAL-RQNFKSY 105 (699)
Q Consensus 31 ~~~~~~~~~~~~eaL~~~~~~L~~----nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L-~~nPKsy 105 (699)
+++.|.-++| +.++++.+.+=.+ -++...+=....-+|.+..+ .++.+++++.+..++ ...+.+.
T Consensus 148 llSyRdiqdy-damI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~---------~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 148 LLSYRDIQDY-DAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNK---------PGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred HHHhhhhhhH-HHHHHHHHHhhccCccchhcchHHHHHHHHHHhhccc---------CCCHHHHHHHHHHHHhccCCCCh
Confidence 4555666667 4666666665444 22222222222333332111 145689999988844 5566666
Q ss_pred HHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCCh--HHHHHHHH-----HHHHh
Q 005381 106 GAWHHRKWILSKG--------HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSE--EDELKYTE-----DMICN 170 (699)
Q Consensus 106 ~aW~hR~w~L~~~--------~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~--e~EL~~~~-----~~I~~ 170 (699)
..+--.|-+.... ...++++++.|.++.+.+|.-|++=++-. ++.-.|... ..|+.-+- ...+.
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~At-LL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAAT-LLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHH-HHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 6665544444321 13478999999999999977666655544 333334321 22333222 11111
Q ss_pred c--cCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHH
Q 005381 171 N--FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (699)
Q Consensus 171 n--~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~ 225 (699)
. -...+-|-+-..+=-.+.- +-++.+.....+++...| -+|+
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~----------~d~~ka~~a~e~~~~l~~---~~W~ 340 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLA----------GDYEKAIQAAEKAFKLKP---PAWE 340 (374)
T ss_pred ccccccccHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhhcCC---cchh
Confidence 1 1223445444333222211 236788888888887754 5674
No 330
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=31.52 E-value=94 Score=28.89 Aligned_cols=45 Identities=22% Similarity=0.224 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHH
Q 005381 17 SAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYR 65 (699)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R 65 (699)
-.+|.+-+|+++=..+++ .+. +.|=.+|..++..+|+|..+---.
T Consensus 72 ~DeY~EaLRDfq~~~iaK---le~-e~Ae~vY~el~~~~P~HLpaHla~ 116 (139)
T PF12583_consen 72 WDEYSEALRDFQCSWIAK---LEP-ENAEQVYEELLEAHPDHLPAHLAM 116 (139)
T ss_dssp HHHHHHHHHHHHHHHHTT---S-H-HHHHHHHHHHHHH-TT-THHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---hCH-HHHHHHHHHHHHHCcchHHHHHHH
Confidence 345555555555444433 344 788899999999999999974443
No 331
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=31.30 E-value=7.3e+02 Score=29.45 Aligned_cols=162 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH----hCCC
Q 005381 45 VELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS----KGHS 120 (699)
Q Consensus 45 L~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~----~~~~ 120 (699)
+-+.+.+|..||.+..-|..|-.+...... +.-..+++.+...|||-...=-|+.|+-. ...+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~-------------~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKLYEGNAA-------------EQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhhhcCChH-------------HHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC
Q ss_pred ChHHHHHHHHHHHHhC-------------------------------------CCChh-------------------hhh
Q 005381 121 SIDNELRLLDKFQKAD-------------------------------------SRNFH-------------------AWN 144 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~d-------------------------------------prN~h-------------------aW~ 144 (699)
.++.+-..++++.+.. |++-+ .|.
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs 481 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWS 481 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHH
Q ss_pred HHHHHHHhcC---------------------------------CChHHHHHHHHHHHH--hccCchHHH-HHHHHHHHHh
Q 005381 145 YRRFVAASMN---------------------------------RSEEDELKYTEDMIC--NNFSNYSAW-HNRSLLLSNL 188 (699)
Q Consensus 145 yR~~vl~~l~---------------------------------~~~e~EL~~~~~~I~--~n~sN~SAW-~~R~~ll~~l 188 (699)
+-.-+.+.+| .|-++.++.+++-|. .-|.=|..| .|.-..+.+.
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Q ss_pred hhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005381 189 LKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (699)
Q Consensus 189 ~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~ 229 (699)
+. ..++++-++|.+|+...|...+--.|+.+
T Consensus 562 gg----------~klEraRdLFEqaL~~Cpp~~aKtiyLlY 592 (835)
T KOG2047|consen 562 GG----------TKLERARDLFEQALDGCPPEHAKTIYLLY 592 (835)
T ss_pred cC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
No 332
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=30.79 E-value=1.6e+02 Score=25.30 Aligned_cols=50 Identities=12% Similarity=0.044 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC
Q 005381 159 DELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220 (699)
Q Consensus 159 ~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d 220 (699)
.+++-..+.++.||.|..+.+.....+..-++ ++++++.+..++..+|+.
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~------------~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGD------------YEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-------------HHHHHHHHHHHHCC-TTC
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCccc
Confidence 35667788999999999998888877665543 678888877777777654
No 333
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=30.26 E-value=5.3 Score=45.51 Aligned_cols=79 Identities=29% Similarity=0.270 Sum_probs=53.6
Q ss_pred EEccCCCCCccc------CCCCCcccCEEEccCCCCCCCcC------Cccc-cccceeecccCCCCCCC---CCcccccc
Q 005381 538 LQLKNLSLSRLG------SFDKLLWVQMLDLSHNELRSIEG------LEAL-QLLSCLNLSNNILGSFT---ALEPIRQL 601 (699)
Q Consensus 538 L~Ls~n~l~~l~------~l~~L~~L~~LdLS~N~L~~l~~------l~~L-~~L~~L~Ls~N~l~~l~---~~~~l~~l 601 (699)
+.|.+|.+..-+ .+...+.|..|++++|.++.... +... ..|+.|.+..+.++... ....+...
T Consensus 92 L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~ 171 (478)
T KOG4308|consen 92 LSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKN 171 (478)
T ss_pred hhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcc
Confidence 677777777433 67778888889999998873211 3333 45777888888776542 12335556
Q ss_pred ccccccccccccCCC
Q 005381 602 KSLRALNISYNEIGA 616 (699)
Q Consensus 602 ~~L~~L~Ls~N~I~~ 616 (699)
..|+.++++.|.+..
T Consensus 172 ~~l~~l~l~~n~l~~ 186 (478)
T KOG4308|consen 172 EHLTELDLSLNGLIE 186 (478)
T ss_pred cchhHHHHHhcccch
Confidence 788888998888853
No 334
>PF13205 Big_5: Bacterial Ig-like domain
Probab=30.12 E-value=2.2e+02 Score=24.44 Aligned_cols=75 Identities=21% Similarity=0.409 Sum_probs=34.9
Q ss_pred ceEEeecccccccc-ccceEEecccCCCccceeeeCCCCCCccceeEEEeccCCCCCCCCCCccceEEecCcccccccCC
Q 005381 280 PLVLYFNQAVEGVN-SSTITVDSELNTNKDLVWKPLSSCNSKAAQVWVTQLNLPDGNTHSSKVFPVEVSLGHSQGIISSS 358 (699)
Q Consensus 280 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (699)
++.|.||+||...+ ...+.+.........+.+.... +. .+-+. |...+.+...|.|.|.-+ +.+..
T Consensus 24 ~i~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~~~~----~~-~~~i~----p~~~L~~~t~Y~v~i~~~----i~d~~ 90 (107)
T PF13205_consen 24 PIVITFSEPVDPASVSSAITITDSNGSGVPVSFSSWD----GN-TLTIT----PSQPLKPGTTYTVTIDSG----IKDLA 90 (107)
T ss_pred eEEEEECCceecCccceEEEEEecCCCcEEEEEEEcc----CC-EEEEE----ECCcCCCCCEEEEEECCC----CCCCC
Confidence 58999999996532 2222332212223344433101 11 11111 123455667887777444 44555
Q ss_pred CCccCCCcc
Q 005381 359 GFHYSNPFC 367 (699)
Q Consensus 359 ~~~~~~~~~ 367 (699)
|.....+..
T Consensus 91 Gn~l~~~~~ 99 (107)
T PF13205_consen 91 GNPLAAPFS 99 (107)
T ss_pred CCccCCCce
Confidence 654444433
No 335
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=29.50 E-value=2.4e+02 Score=25.52 Aligned_cols=72 Identities=24% Similarity=0.236 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhccCchHHHHH---HHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005381 158 EDELKYTEDMICNNFSNYSAWHN---RSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (699)
Q Consensus 158 e~EL~~~~~~I~~n~sN~SAW~~---R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~L 230 (699)
-++|+.+++.|..+.++.++|.. .|.++..+.. ..+....+...+.-.++++.++..+.|.-...-+.+.--
T Consensus 13 iKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~-~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~ 87 (111)
T PF04781_consen 13 IKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAK-KTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQ 87 (111)
T ss_pred HHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHH-hccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence 35677777777777777766521 2333333322 122333445557888999999999999876555544433
No 336
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.17 E-value=5.7e+02 Score=28.05 Aligned_cols=116 Identities=14% Similarity=0.001 Sum_probs=76.0
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCC-------------------------CCc----------
Q 005381 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND-------------------------SDP---------- 80 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~-------------------------~~~---------- 80 (699)
+-|+| ++|++.|+.+-...--....|-+-..+..-++...+ .|.
T Consensus 69 hLgdY-~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~L 147 (557)
T KOG3785|consen 69 HLGDY-EEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSL 147 (557)
T ss_pred hhccH-HHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34566 789998888887766667777665554433322100 000
Q ss_pred -------------hhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHH
Q 005381 81 -------------DSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRR 147 (699)
Q Consensus 81 -------------~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~ 147 (699)
.-....|+++++.+.++|..||.-...=.+-..+..++ .-++-.-+..+-.|+..|..--|-+-+.
T Consensus 148 qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKl-DYydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 148 QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKL-DYYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhc-chhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 01224589999999999988876555555556666666 4667777788888888888888877776
Q ss_pred HHHHhc
Q 005381 148 FVAASM 153 (699)
Q Consensus 148 ~vl~~l 153 (699)
...-++
T Consensus 227 cn~fRl 232 (557)
T KOG3785|consen 227 CNLFRL 232 (557)
T ss_pred HHHhhh
Confidence 555444
No 337
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=28.97 E-value=9.4e+02 Score=27.68 Aligned_cols=89 Identities=12% Similarity=0.076 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCC---------
Q 005381 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGH--SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR--------- 155 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~--~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~--------- 155 (699)
.+|+++.+..+++.+|.. ..-+-|..+++-+. ..|.+.-.+..|.=++.--.-.+|.|-+-+++--..
T Consensus 275 ~~EAIk~~rdLlke~p~~-~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a 353 (539)
T PF04184_consen 275 LREAIKMFRDLLKEFPNL-DNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAA 353 (539)
T ss_pred hHHHHHHHHHHHhhCCcc-chhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhh
Confidence 789999999999888742 22334544444221 356666666666533333345788888766542111
Q ss_pred -----C--hHHHHHHHHHHHHhccCchH
Q 005381 156 -----S--EEDELKYTEDMICNNFSNYS 176 (699)
Q Consensus 156 -----~--~e~EL~~~~~~I~~n~sN~S 176 (699)
. ...+++...++++.||.--.
T Consensus 354 ~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 354 SRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 0 12356778888888887654
No 338
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=28.60 E-value=3.7e+02 Score=28.40 Aligned_cols=67 Identities=22% Similarity=0.185 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCChHHHH-------HHHHHHHhCC--------------CChHHHHHHHHHHHHhCCCChhhhhHHHH
Q 005381 90 ELRVVESALRQNFKSYGAWH-------HRKWILSKGH--------------SSIDNELRLLDKFQKADSRNFHAWNYRRF 148 (699)
Q Consensus 90 EL~~~~~~L~~nPKsy~aW~-------hR~w~L~~~~--------------~~~~~EL~~~~k~L~~dprN~haW~yR~~ 148 (699)
-+...+.=+..+|+||++|. ++.|-+.-.. ...+.+...+-++++++||-..|...-.-
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 44555555677888888754 4444444111 12468888999999999999999888777
Q ss_pred HHHhcCCC
Q 005381 149 VAASMNRS 156 (699)
Q Consensus 149 vl~~l~~~ 156 (699)
+...+|.+
T Consensus 142 ~s~~fgeP 149 (277)
T PF13226_consen 142 ISAYFGEP 149 (277)
T ss_pred HHhhcCCc
Confidence 77888765
No 339
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=28.28 E-value=2e+02 Score=30.12 Aligned_cols=64 Identities=13% Similarity=0.038 Sum_probs=55.3
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHH
Q 005381 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (699)
Q Consensus 120 ~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~l 184 (699)
..++.++.+.++.+.++|.+...|.-||.+..+++-+ .-+++-+...++.-|.+.-|=.-|..+
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~-~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCY-HVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCc-hhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3688999999999999999999999999999999987 678888888899889888776655544
No 340
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=28.27 E-value=6.4e+02 Score=27.88 Aligned_cols=109 Identities=13% Similarity=0.155 Sum_probs=71.8
Q ss_pred ChHHHHHHHHHHHHh----CCCChhhhhHHHHHHHh---cCCChHHHHHHHHHHH-HhccCchHHHHHHHHHHHHhhhhh
Q 005381 121 SIDNELRLLDKFQKA----DSRNFHAWNYRRFVAAS---MNRSEEDELKYTEDMI-CNNFSNYSAWHNRSLLLSNLLKRK 192 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~----dprN~haW~yR~~vl~~---l~~~~e~EL~~~~~~I-~~n~sN~SAW~~R~~ll~~l~~~~ 192 (699)
+|+.=+++++.+=.+ -++..+.=.+.+|++.+ -|.. +++++.+..++ .....+-..+.-.|.+.+.+....
T Consensus 156 dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdr-e~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s 234 (374)
T PF13281_consen 156 DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDR-EKALQILLPVLESDENPDPDTLGLLGRIYKDLFLES 234 (374)
T ss_pred hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCH-HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHc
Confidence 455555555554444 34455555666777777 4544 67777777734 445666667777777777765532
Q ss_pred ccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 193 VEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 193 ~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
+. ...+.++++++.|.+++.++|+..++=++.--|.-.
T Consensus 235 --~~-~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 235 --NF-TDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLA 272 (374)
T ss_pred --Cc-cchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHc
Confidence 11 122347999999999999999999999987755544
No 341
>PRK04841 transcriptional regulator MalT; Provisional
Probab=27.81 E-value=1.2e+03 Score=28.52 Aligned_cols=121 Identities=12% Similarity=0.012 Sum_probs=74.6
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCch-----HHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCC----Ch
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELY-----TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK----SY 105 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~y-----taWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPK----sy 105 (699)
...|++ ++|......++...|... .+++..+.+....+ .++++...++.++..... ..
T Consensus 463 ~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G------------~~~~A~~~~~~al~~~~~~g~~~~ 529 (903)
T PRK04841 463 INDGDP-EEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG------------ELARALAMMQQTEQMARQHDVYHY 529 (903)
T ss_pred HhCCCH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHhhhcchHH
Confidence 346666 789999999998666543 23344444444443 378888888888864332 11
Q ss_pred H--HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC--------hhhhhHHHHHHHhcCCChHHHHHHHHHHHHh
Q 005381 106 G--AWHHRKWILSKGHSSIDNELRLLDKFQKADSRN--------FHAWNYRRFVAASMNRSEEDELKYTEDMICN 170 (699)
Q Consensus 106 ~--aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN--------~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~ 170 (699)
. +....+.+.... ++++++..++++++..-.+. ..++..++.+....|.+ ++..+...+++..
T Consensus 530 ~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~-~~A~~~~~~al~~ 602 (903)
T PRK04841 530 ALWSLLQQSEILFAQ-GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL-DEAEQCARKGLEV 602 (903)
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH-HHHHHHHHHhHHh
Confidence 1 222334444433 68999999999988753221 12233455666667887 5677777887775
No 342
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.61 E-value=35 Score=46.22 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=17.8
Q ss_pred EccCCCCCccc--CCCCCcccCEEEccCCCC
Q 005381 539 QLKNLSLSRLG--SFDKLLWVQMLDLSHNEL 567 (699)
Q Consensus 539 ~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L 567 (699)
+|++|.|+.|+ .|..|++|+.|+|++|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 35666666665 556666666666666655
No 343
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=26.45 E-value=1.7e+02 Score=30.13 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCCC
Q 005381 158 EDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRV 237 (699)
Q Consensus 158 e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~~ 237 (699)
+...+.+.++++.-|..--.|.-.+..-.+-+ .++.+...+.+++++||.|.-+=-.+.-++++...+
T Consensus 12 ~aaaely~qal~lap~w~~gwfR~g~~~ekag------------~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~~e~p 79 (287)
T COG4976 12 EAAAELYNQALELAPEWAAGWFRLGEYTEKAG------------EFDAAAAAYEEVLELDPEDHGGAALKLAVLGRGETP 79 (287)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhcchhhhhcc------------cHHHHHHHHHHHHcCCcccccchhhhHHhhcCCCCC
Confidence 34555566666666666666655544333222 257888899999999999999999999999987655
Q ss_pred CCC
Q 005381 238 DSP 240 (699)
Q Consensus 238 ~~~ 240 (699)
+.|
T Consensus 80 ~~p 82 (287)
T COG4976 80 EKP 82 (287)
T ss_pred CCC
Confidence 544
No 344
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=25.72 E-value=5.1e+02 Score=23.57 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHH
Q 005381 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (699)
Q Consensus 120 ~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~ 166 (699)
+.+++++..+.+++..||-|-.+|....-++...|.. .+.++.+.+
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~-~~A~~~Y~~ 121 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRR-AEALRVYER 121 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCH-HHHHHHHHH
Confidence 5788888888888888888888888888888888877 456665444
No 345
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=25.53 E-value=73 Score=33.99 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHHhCCCchHHHHHHH-HHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC
Q 005381 41 SKEAVELSTKLLETNPELYTAWNYRK-LAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH 119 (699)
Q Consensus 41 ~~eaL~~~~~~L~~nP~~ytaWn~R~-~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~ 119 (699)
..+.=..+.++|+.+|.+...|-+-. .-+... ..++..-..+.+.|+.||.++..|.-
T Consensus 123 y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~------------ani~s~Ra~f~~glR~N~~~p~iw~e--------- 181 (435)
T COG5191 123 YGEMKNIFAECLTKHPLNVDLWIYCCAFELFEI------------ANIESSRAMFLKGLRMNSRSPRIWIE--------- 181 (435)
T ss_pred HHHHHHHHHHHHhcCCCCceeeeeeccchhhhh------------ccHHHHHHHHHhhhccCCCCchHHHH---------
Confidence 36778899999999999999998732 112222 23778888999999999999999942
Q ss_pred CChHHHHHHHHHHHH
Q 005381 120 SSIDNELRLLDKFQK 134 (699)
Q Consensus 120 ~~~~~EL~~~~k~L~ 134 (699)
-+.-|+.+..+.+.
T Consensus 182 -yfr~El~yiTKL~~ 195 (435)
T COG5191 182 -YFRMELMYITKLIN 195 (435)
T ss_pred -HHHHHHHHHHHHHh
Confidence 22346666666554
No 346
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=25.52 E-value=91 Score=19.96 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHH
Q 005381 87 LDEELRVVESALRQNFKSYGAWHHR 111 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nPKsy~aW~hR 111 (699)
++.+-..+++++...|.+...|..-
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHH
Confidence 4556677888888888888888543
No 347
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=24.75 E-value=7.1e+02 Score=29.12 Aligned_cols=101 Identities=15% Similarity=-0.062 Sum_probs=73.6
Q ss_pred HHHHHhcCCCC-cHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHH
Q 005381 30 QFLHNHHNHIY-SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAW 108 (699)
Q Consensus 30 ~~~~~~~~~~~-~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW 108 (699)
.+++...+.-- +..+.-....+|..||++..+-..-...++..+ ..+.-...+.+.+...-|++.++-
T Consensus 71 ~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~-----------~~~~~~~~~~~~a~~~~~~~~~~~ 139 (620)
T COG3914 71 AFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDG-----------LQFLALADISEIAEWLSPDNAEFL 139 (620)
T ss_pred HHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHhcCcchHHHH
Confidence 33554444333 447788889999999999988777666665432 235666788888999999999999
Q ss_pred HHH------HHHHHhCCCChHHHHHHHHHHHHhCCCChhh
Q 005381 109 HHR------KWILSKGHSSIDNELRLLDKFQKADSRNFHA 142 (699)
Q Consensus 109 ~hR------~w~L~~~~~~~~~EL~~~~k~L~~dprN~ha 142 (699)
.|+ +-++.-+ ....+......++.++.|+|.+.
T Consensus 140 ~~~~~~~~~~~~~~~l-~~~~~~~~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 140 GHLIRFYQLGRYLKLL-GRTAEAELALERAVDLLPKYPRV 178 (620)
T ss_pred hhHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhhhhhhhh
Confidence 999 4444444 46677888888899999988654
No 348
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.34 E-value=8.6e+02 Score=25.70 Aligned_cols=85 Identities=7% Similarity=0.024 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHH
Q 005381 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~ 166 (699)
++++.-.|+..-.+.|-..-.-++..-+--.+ ++|+++..++..+|..|++.+.+-.+-.-+..+.|.+.+.--.++..
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~-~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL-GRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHh-cCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 66777777777776666666666555444434 58888888888888888888888888877777788774333333333
Q ss_pred HHHhcc
Q 005381 167 MICNNF 172 (699)
Q Consensus 167 ~I~~n~ 172 (699)
.-..+|
T Consensus 268 Lk~~~p 273 (299)
T KOG3081|consen 268 LKLSHP 273 (299)
T ss_pred HHhcCC
Confidence 333333
No 349
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=24.16 E-value=9.4e+02 Score=27.32 Aligned_cols=98 Identities=7% Similarity=0.048 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHH--hCCCCh--hhhhHHHHHHHhcCCChHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQK--ADSRNF--HAWNYRRFVAASMNRSEEDE 160 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~--~dprN~--haW~yR~~vl~~l~~~~e~E 160 (699)
...+.+-+..+..+...|++.---.+++-+.... +..+++++.+++++. ..-+-+ -++.=++|+.-....| +++
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~-g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w-~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK-GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW-EEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH-HHH
Confidence 4466777888888899999877666666666644 689999999999884 222222 2333457776666777 788
Q ss_pred HHHHHHHHHhccCchHHHHHHHHH
Q 005381 161 LKYTEDMICNNFSNYSAWHNRSLL 184 (699)
Q Consensus 161 L~~~~~~I~~n~sN~SAW~~R~~l 184 (699)
.+++.+..+.+---..-+.|-..+
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHH
Confidence 889888888544333333343333
No 350
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.94 E-value=17 Score=36.30 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=19.3
Q ss_pred ccccceeecccCC-CCCCCCCccccccccccccccc
Q 005381 576 LQLLSCLNLSNNI-LGSFTALEPIRQLKSLRALNIS 610 (699)
Q Consensus 576 L~~L~~L~Ls~N~-l~~l~~~~~l~~l~~L~~L~Ls 610 (699)
.++|+.|++++|. |++- .+..+..+++|+.|.+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLY 184 (221)
T ss_pred ccchheeeccCCCeechh-HHHHHHHhhhhHHHHhc
Confidence 3466777777553 4442 33455566666666554
No 351
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=23.66 E-value=1.8e+03 Score=29.06 Aligned_cols=154 Identities=12% Similarity=0.061 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHH---HHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHH
Q 005381 17 SAAKAEKLRVLQSQ---FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRV 93 (699)
Q Consensus 17 ~~~~~~~~~~~~~~---~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~ 93 (699)
--+++-+|.+.... ..-.+...+--++|-++++.+++..-.--.+|-..+..|..... -+++-.+
T Consensus 1519 VFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne------------~~aa~~l 1586 (1710)
T KOG1070|consen 1519 VFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNE------------AEAAREL 1586 (1710)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccH------------HHHHHHH
Confidence 35555555543322 23345566666899999999999999888999877766654422 3566678
Q ss_pred HHHHHHhCCCChHHHHHHHHHHH-hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCC-hHHHHHHHHHHHHhc
Q 005381 94 VESALRQNFKSYGAWHHRKWILS-KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS-EEDELKYTEDMICNN 171 (699)
Q Consensus 94 ~~~~L~~nPKsy~aW~hR~w~L~-~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~-~e~EL~~~~~~I~~n 171 (699)
+.+||+.=||.-++=.-+.++.- ...++.++.-.+++-.+.-+|+=-..|. .++=+.++.- .+..-..++++|...
T Consensus 1587 L~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~--VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1587 LKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWS--VYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHH--HHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 88899989996555444444432 2236778888999999999999999998 2222222211 134555678888876
Q ss_pred cCchH-HHHHHHHH
Q 005381 172 FSNYS-AWHNRSLL 184 (699)
Q Consensus 172 ~sN~S-AW~~R~~l 184 (699)
.+=.- -..|+.||
T Consensus 1665 l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1665 LSIKKMKFFFKKWL 1678 (1710)
T ss_pred CChhHhHHHHHHHH
Confidence 55442 24555555
No 352
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=22.75 E-value=8.8e+02 Score=27.58 Aligned_cols=137 Identities=16% Similarity=0.210 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
.+-.+|+ -+..-++.||.+...|+.----+.-. +.++++-+.++++..--|=--|||. +..-|....+++..+
T Consensus 23 ~i~~D~l-rLRerIkdNPtnI~S~fqLiq~~~tq-~s~~~~re~yeq~~~pfp~~~~aw~-----ly~s~ELA~~df~sv 95 (660)
T COG5107 23 NIHGDEL-RLRERIKDNPTNILSYFQLIQYLETQ-ESMDAEREMYEQLSSPFPIMEHAWR-----LYMSGELARKDFRSV 95 (660)
T ss_pred CCCchHH-HHHHHhhcCchhHHHHHHHHHHHhhh-hhHHHHHHHHHHhcCCCccccHHHH-----HHhcchhhhhhHHHH
Confidence 3456777 44556788999999998766666533 5789999999999888887778875 322222112233333
Q ss_pred HHHHH---hccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005381 165 EDMIC---NNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 165 ~~~I~---~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll 231 (699)
+..+. .-.-+-+.|.-----+++..+... ....-.+-++.+++..-+-.+|.-.+.|.-..-.|
T Consensus 96 E~lf~rCL~k~l~ldLW~lYl~YIRr~n~~~t---Gq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fl 162 (660)
T COG5107 96 ESLFGRCLKKSLNLDLWMLYLEYIRRVNNLIT---GQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFL 162 (660)
T ss_pred HHHHHHHHhhhccHhHHHHHHHHHHhhCcccc---cchhhhhHHHHHHHHhcccccccccchHHHHHHHH
Confidence 32222 123346778433333343332211 12223457889999988888999999998444444
No 353
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.40 E-value=12 Score=37.33 Aligned_cols=61 Identities=25% Similarity=0.331 Sum_probs=28.6
Q ss_pred ccCEEEccCCCCCC--CcCCccccccceeecccCC-CCCCCCCcccc-ccccccccccccc-cCCCC
Q 005381 556 WVQMLDLSHNELRS--IEGLEALQLLSCLNLSNNI-LGSFTALEPIR-QLKSLRALNISYN-EIGAH 617 (699)
Q Consensus 556 ~L~~LdLS~N~L~~--l~~l~~L~~L~~L~Ls~N~-l~~l~~~~~l~-~l~~L~~L~Ls~N-~I~~l 617 (699)
.++.+|-|+..|.. +..+.+++.++.|.+.++. +... .++.++ ..++|+.|+|++| +|++-
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~-~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDW-CLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhH-HHHHhcccccchheeeccCCCeechh
Confidence 45566666665532 2225555555555555443 1110 011111 2356777777744 44443
No 354
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=21.64 E-value=2.8e+02 Score=23.77 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 005381 89 EELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN 139 (699)
Q Consensus 89 eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN 139 (699)
.++.-++..+..||++..+.+.-.-.+... +.++.+++.+-.+++.|+..
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~-g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAA-GDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHT-T-HHHHHHHHHHHHCC-TTC
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCccc
Confidence 456777788888888888887777766654 57888888888888777643
No 355
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=21.35 E-value=1.6e+02 Score=30.26 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=59.3
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 005381 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L 115 (699)
..++. +.+.+++.++|..-|+...-|..-+..-.+-++ +..+.+.+++.|+++|..-..=.+|--++
T Consensus 7 ~~~D~-~aaaely~qal~lap~w~~gwfR~g~~~ekag~------------~daAa~a~~~~L~ldp~D~~gaa~kLa~l 73 (287)
T COG4976 7 ESGDA-EAAAELYNQALELAPEWAAGWFRLGEYTEKAGE------------FDAAAAAYEEVLELDPEDHGGAALKLAVL 73 (287)
T ss_pred ccCCh-HHHHHHHHHHhhcCchhhhhhhhcchhhhhccc------------HHHHHHHHHHHHcCCcccccchhhhHHhh
Confidence 44555 678999999999999999999987776655543 88999999999999999999999998888
Q ss_pred HhC
Q 005381 116 SKG 118 (699)
Q Consensus 116 ~~~ 118 (699)
.+.
T Consensus 74 g~~ 76 (287)
T COG4976 74 GRG 76 (287)
T ss_pred cCC
Confidence 764
No 356
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=20.46 E-value=5.3e+02 Score=27.26 Aligned_cols=72 Identities=8% Similarity=0.029 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHhhhh-hc---------cCccchhchHHHHHHHHHHHHHhCCCCchhHHHHH
Q 005381 159 DELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR-KV---------EGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHL 228 (699)
Q Consensus 159 ~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~-~~---------~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~ 228 (699)
+-.+..+.+++..|+.|.||.-++....+..-. .. ++...-....+.+...+.+|+.++|....+..-..
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 466677888888888888776555555443321 01 11122344568899999999999999888876544
Q ss_pred HH
Q 005381 229 WL 230 (699)
Q Consensus 229 ~L 230 (699)
-+
T Consensus 141 ~~ 142 (277)
T PF13226_consen 141 NI 142 (277)
T ss_pred HH
Confidence 33
Done!