Query 005381
Match_columns 699
No_of_seqs 542 out of 4283
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 23:44:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dce_A Protein (RAB geranylger 100.0 1.8E-74 6.2E-79 662.9 42.7 554 1-694 1-566 (567)
2 3dss_A Geranylgeranyl transfer 100.0 7.7E-54 2.6E-58 456.9 28.8 316 1-512 2-325 (331)
3 3q7a_A Farnesyltransferase alp 100.0 4.3E-45 1.5E-49 391.1 16.4 230 10-255 39-276 (349)
4 3dra_A Protein farnesyltransfe 100.0 4.7E-43 1.6E-47 371.2 20.7 211 10-236 18-235 (306)
5 1dce_A Protein (RAB geranylger 100.0 1.6E-37 5.4E-42 356.3 9.7 423 41-618 89-549 (567)
6 3dra_A Protein farnesyltransfe 100.0 6.7E-30 2.3E-34 270.4 20.4 187 40-232 84-304 (306)
7 3dss_A Geranylgeranyl transfer 100.0 1.5E-28 5.3E-33 261.8 20.7 176 42-231 91-280 (331)
8 3q7a_A Farnesyltransferase alp 99.9 1.1E-26 3.8E-31 248.6 16.1 167 52-235 47-215 (349)
9 2h6f_A Protein farnesyltransfe 99.9 3.5E-24 1.2E-28 234.0 23.6 193 23-234 95-287 (382)
10 2h6f_A Protein farnesyltransfe 99.8 8.7E-19 3E-23 191.3 19.5 176 34-233 141-321 (382)
11 2pl2_A Hypothetical conserved 99.6 2.4E-14 8.2E-19 142.7 21.5 184 30-240 11-204 (217)
12 3vtx_A MAMA; tetratricopeptide 99.6 2.9E-14 1E-18 136.8 19.6 164 31-221 12-175 (184)
13 4i17_A Hypothetical protein; T 99.5 1.6E-12 5.6E-17 129.1 22.6 190 28-232 11-225 (228)
14 1ozn_A Reticulon 4 receptor; N 99.5 1.1E-13 3.6E-18 144.0 12.0 141 538-694 85-231 (285)
15 1h6t_A Internalin B; cell adhe 99.5 6E-14 2E-18 147.0 10.0 173 482-699 64-238 (291)
16 2z62_A TOLL-like receptor 4, v 99.5 5.3E-14 1.8E-18 145.6 8.7 171 480-674 46-236 (276)
17 4gyw_A UDP-N-acetylglucosamine 99.5 7.1E-13 2.4E-17 155.7 18.5 161 31-218 16-176 (723)
18 3rfs_A Internalin B, repeat mo 99.5 2.3E-13 7.9E-18 140.8 12.0 123 538-674 90-217 (272)
19 3e6j_A Variable lymphocyte rec 99.5 1.7E-13 5.7E-18 138.4 10.5 147 537-698 44-200 (229)
20 2pzi_A Probable serine/threoni 99.4 5.6E-13 1.9E-17 156.0 16.5 171 35-233 402-580 (681)
21 2o6q_A Variable lymphocyte rec 99.4 2.4E-13 8.3E-18 140.4 11.8 123 538-674 90-217 (270)
22 4abn_A Tetratricopeptide repea 99.4 2.9E-12 9.9E-17 143.4 20.9 175 34-234 112-305 (474)
23 4fcg_A Uncharacterized protein 99.4 5.7E-14 1.9E-18 149.8 6.5 147 538-694 132-307 (328)
24 1m9s_A Internalin B; cell inva 99.4 2.6E-13 8.8E-18 156.5 12.0 173 481-698 60-234 (605)
25 1xeu_A Internalin C; cellular 99.4 1.2E-13 4.1E-18 142.6 8.0 171 481-698 36-209 (263)
26 4gyw_A UDP-N-acetylglucosamine 99.4 2.2E-12 7.6E-17 151.5 19.6 159 54-238 4-162 (723)
27 3m19_A Variable lymphocyte rec 99.4 3.7E-13 1.3E-17 137.5 11.4 123 538-674 64-191 (251)
28 3rfs_A Internalin B, repeat mo 99.4 4.6E-13 1.6E-17 138.5 12.0 172 482-694 37-211 (272)
29 1h6u_A Internalin H; cell adhe 99.4 1.3E-13 4.3E-18 145.7 7.6 117 538-674 112-229 (308)
30 3urz_A Uncharacterized protein 99.4 2.5E-12 8.4E-17 127.2 16.3 176 26-229 6-198 (208)
31 1h6u_A Internalin H; cell adhe 99.4 4.1E-13 1.4E-17 141.7 11.3 164 481-694 58-223 (308)
32 3vtx_A MAMA; tetratricopeptide 99.4 1.2E-11 4.2E-16 118.4 20.0 156 56-237 2-157 (184)
33 1p9a_G Platelet glycoprotein I 99.4 4.1E-13 1.4E-17 140.6 9.8 159 476-674 45-207 (290)
34 3m19_A Variable lymphocyte rec 99.4 8.9E-13 3E-17 134.6 12.0 141 538-694 40-185 (251)
35 2o6q_A Variable lymphocyte rec 99.4 7.2E-13 2.5E-17 136.9 11.4 141 538-694 66-211 (270)
36 3zyj_A Leucine-rich repeat-con 99.4 3.8E-13 1.3E-17 148.9 9.4 123 538-674 165-291 (440)
37 1p9a_G Platelet glycoprotein I 99.4 2.8E-13 9.4E-18 141.9 7.8 123 538-674 60-184 (290)
38 3zyi_A Leucine-rich repeat-con 99.4 3.2E-13 1.1E-17 150.1 8.7 77 538-617 152-233 (452)
39 3zyi_A Leucine-rich repeat-con 99.4 4.4E-13 1.5E-17 148.9 9.5 187 476-694 89-296 (452)
40 3zyj_A Leucine-rich repeat-con 99.4 5E-13 1.7E-17 147.9 9.2 139 538-694 141-285 (440)
41 4fcg_A Uncharacterized protein 99.4 3E-13 1E-17 144.1 7.0 122 538-674 188-313 (328)
42 4gco_A Protein STI-1; structur 99.4 2.8E-12 9.5E-17 116.8 12.3 123 49-185 3-125 (126)
43 1h6t_A Internalin B; cell adhe 99.4 1.4E-12 4.7E-17 136.6 11.6 164 482-694 42-206 (291)
44 3o6n_A APL1; leucine-rich repe 99.4 1E-12 3.4E-17 142.9 10.9 117 477-618 60-181 (390)
45 1w3b_A UDP-N-acetylglucosamine 99.4 4.4E-11 1.5E-15 128.4 23.3 166 43-234 119-284 (388)
46 3oja_B Anopheles plasmodium-re 99.4 7.1E-13 2.4E-17 152.7 9.7 119 476-619 65-188 (597)
47 3hym_B Cell division cycle pro 99.4 1.5E-11 5.1E-16 127.5 18.8 182 29-236 27-208 (330)
48 1ozn_A Reticulon 4 receptor; N 99.4 1.7E-12 5.6E-17 134.9 11.5 171 485-695 31-208 (285)
49 2q7f_A YRRB protein; TPR, prot 99.4 5.8E-11 2E-15 117.7 22.3 170 35-231 68-237 (243)
50 1w3b_A UDP-N-acetylglucosamine 99.4 3.4E-11 1.2E-15 129.3 21.4 183 35-232 180-384 (388)
51 2z66_A Variable lymphocyte rec 99.4 4E-13 1.4E-17 141.0 6.1 124 538-674 106-235 (306)
52 4eqf_A PEX5-related protein; a 99.4 3.1E-11 1.1E-15 128.3 20.8 177 35-237 76-297 (365)
53 1ds9_A Outer arm dynein; leuci 99.4 2.4E-14 8.3E-19 141.0 -3.3 162 482-699 14-185 (198)
54 2pl2_A Hypothetical conserved 99.3 2.3E-11 7.7E-16 121.0 17.9 154 56-236 2-166 (217)
55 2q7f_A YRRB protein; TPR, prot 99.3 3.2E-11 1.1E-15 119.6 18.6 180 32-238 31-210 (243)
56 2v9t_B SLIT homolog 2 protein 99.3 2.4E-12 8.1E-17 129.2 9.9 123 538-674 37-164 (220)
57 4gco_A Protein STI-1; structur 99.3 8.8E-12 3E-16 113.5 12.7 122 96-231 4-125 (126)
58 1ogq_A PGIP-2, polygalacturona 99.3 7.3E-14 2.5E-18 147.8 -1.5 174 477-694 116-297 (313)
59 1m9s_A Internalin B; cell inva 99.3 3.5E-12 1.2E-16 147.0 12.4 165 482-695 39-204 (605)
60 1a9n_A U2A', U2A'; complex (nu 99.3 1.1E-12 3.8E-17 126.5 7.0 125 537-698 23-150 (176)
61 4fmz_A Internalin; leucine ric 99.3 7.4E-13 2.5E-17 141.3 6.1 134 538-694 204-339 (347)
62 2ho1_A Type 4 fimbrial biogene 99.3 9.5E-11 3.2E-15 117.4 21.0 183 25-234 38-222 (252)
63 1xku_A Decorin; proteoglycan, 99.3 6.9E-13 2.4E-17 140.8 5.5 192 472-694 131-325 (330)
64 4ecn_A Leucine-rich repeat pro 99.3 1E-12 3.4E-17 157.2 7.2 126 475-618 504-635 (876)
65 2z80_A TOLL-like receptor 2, v 99.3 2E-12 6.8E-17 138.7 8.8 142 538-694 81-228 (353)
66 3hym_B Cell division cycle pro 99.3 9.4E-11 3.2E-15 121.4 21.1 165 42-232 142-315 (330)
67 4ga2_A E3 SUMO-protein ligase 99.3 1.1E-11 3.8E-16 116.2 12.7 138 37-188 10-147 (150)
68 2z80_A TOLL-like receptor 2, v 99.3 3.7E-13 1.3E-17 144.4 2.9 151 538-694 129-307 (353)
69 2z66_A Variable lymphocyte rec 99.3 7.2E-13 2.5E-17 139.0 5.0 125 536-674 129-260 (306)
70 2vq2_A PILW, putative fimbrial 99.3 2.5E-10 8.4E-15 111.3 22.7 177 31-233 15-194 (225)
71 4fmz_A Internalin; leucine ric 99.3 9.9E-13 3.4E-17 140.3 5.6 135 538-694 182-317 (347)
72 3uq3_A Heat shock protein STI1 99.3 9.8E-11 3.3E-15 116.8 19.9 181 28-236 9-222 (258)
73 3o53_A Protein LRIM1, AGAP0063 99.3 1.2E-12 4.2E-17 138.4 6.3 138 538-694 125-268 (317)
74 1ogq_A PGIP-2, polygalacturona 99.3 4.5E-13 1.5E-17 141.7 2.9 177 476-695 91-275 (313)
75 2je0_A Acidic leucine-rich nuc 99.3 2.7E-12 9.3E-17 120.0 7.7 122 538-696 22-148 (149)
76 2id5_A Lingo-1, leucine rich r 99.3 3.3E-12 1.1E-16 142.6 9.5 80 538-618 109-192 (477)
77 1xeu_A Internalin C; cellular 99.3 2.2E-12 7.6E-17 133.0 7.3 132 538-694 46-178 (263)
78 2ft3_A Biglycan; proteoglycan, 99.3 9.4E-13 3.2E-17 140.0 4.5 187 475-694 136-326 (332)
79 3u4t_A TPR repeat-containing p 99.3 7.7E-11 2.6E-15 119.3 18.6 177 30-235 9-190 (272)
80 2ell_A Acidic leucine-rich nuc 99.3 5.3E-12 1.8E-16 120.5 9.3 122 538-696 29-155 (168)
81 2v9t_B SLIT homolog 2 protein 99.3 6.1E-12 2.1E-16 126.2 10.2 139 538-694 16-158 (220)
82 4eco_A Uncharacterized protein 99.3 4.5E-13 1.5E-17 155.6 2.1 125 475-618 262-393 (636)
83 3ieg_A DNAJ homolog subfamily 99.3 1.8E-10 6.2E-15 120.4 21.7 181 27-234 6-201 (359)
84 2v70_A SLIT-2, SLIT homolog 2 99.3 7.5E-12 2.6E-16 125.5 10.1 124 537-674 36-165 (220)
85 2o6s_A Variable lymphocyte rec 99.3 1.5E-11 5.1E-16 121.6 12.2 124 537-674 32-160 (208)
86 2xot_A Amphoterin-induced prot 99.3 1.5E-12 5.1E-17 140.5 5.3 126 538-674 69-201 (361)
87 4ezg_A Putative uncharacterize 99.3 2.3E-12 7.7E-17 126.7 5.6 149 483-674 41-193 (197)
88 1xku_A Decorin; proteoglycan, 99.3 6.8E-12 2.3E-16 133.1 9.7 136 538-694 126-269 (330)
89 3oja_A Leucine-rich immune mol 99.3 2.1E-12 7.3E-17 145.1 5.9 138 538-694 125-268 (487)
90 2wfh_A SLIT homolog 2 protein 99.3 6.4E-12 2.2E-16 123.5 8.5 99 538-674 36-138 (193)
91 3oja_B Anopheles plasmodium-re 99.3 6.6E-12 2.3E-16 144.6 10.1 33 538-570 152-186 (597)
92 4eqf_A PEX5-related protein; a 99.3 1.4E-10 4.6E-15 123.3 19.5 186 35-235 110-341 (365)
93 1fch_A Peroxisomal targeting s 99.3 4.8E-10 1.7E-14 118.5 23.5 176 34-236 74-300 (368)
94 4eco_A Uncharacterized protein 99.3 4.2E-12 1.4E-16 147.4 8.1 175 481-674 325-525 (636)
95 2ft3_A Biglycan; proteoglycan, 99.3 9.2E-12 3.2E-16 132.3 10.0 136 538-695 128-271 (332)
96 3v47_A TOLL-like receptor 5B a 99.3 6.7E-12 2.3E-16 138.8 9.3 55 538-592 108-169 (455)
97 3uq3_A Heat shock protein STI1 99.3 1.4E-10 4.7E-15 115.7 17.9 170 32-228 46-254 (258)
98 4ezg_A Putative uncharacterize 99.3 7E-12 2.4E-16 123.2 8.3 137 538-694 49-187 (197)
99 4abn_A Tetratricopeptide repea 99.3 1.3E-10 4.3E-15 130.0 19.5 177 42-237 85-274 (474)
100 4ga2_A E3 SUMO-protein ligase 99.3 2.7E-11 9.2E-16 113.5 11.8 135 85-233 11-146 (150)
101 3t6q_A CD180 antigen; protein- 99.3 6E-12 2.1E-16 144.5 8.9 79 538-617 110-194 (606)
102 4i17_A Hypothetical protein; T 99.3 1.3E-10 4.6E-15 115.2 17.5 151 56-232 4-164 (228)
103 4g8a_A TOLL-like receptor 4; l 99.3 5.5E-12 1.9E-16 144.7 8.2 126 536-674 55-185 (635)
104 3v47_A TOLL-like receptor 5B a 99.2 5.2E-12 1.8E-16 139.7 7.4 124 537-674 279-407 (455)
105 3u4t_A TPR repeat-containing p 99.2 2.1E-10 7.1E-15 116.1 18.7 171 35-233 85-267 (272)
106 3as5_A MAMA; tetratricopeptide 99.2 2.4E-10 8.3E-15 107.4 17.8 166 32-224 16-181 (186)
107 2v70_A SLIT-2, SLIT homolog 2 99.2 1.8E-11 6.2E-16 122.7 10.4 141 537-694 15-159 (220)
108 2id5_A Lingo-1, leucine rich r 99.2 6.6E-12 2.3E-16 140.1 7.8 123 538-674 85-212 (477)
109 3e6j_A Variable lymphocyte rec 99.2 2.4E-11 8.2E-16 122.5 11.2 140 537-694 23-165 (229)
110 2ell_A Acidic leucine-rich nuc 99.2 3.4E-12 1.2E-16 121.9 4.4 133 485-674 23-159 (168)
111 3rgz_A Protein brassinosteroid 99.2 6.4E-12 2.2E-16 149.0 7.6 135 476-618 408-555 (768)
112 2y4t_A DNAJ homolog subfamily 99.2 2.9E-10 1E-14 123.9 20.3 183 26-235 28-225 (450)
113 2z62_A TOLL-like receptor 4, v 99.2 8.9E-12 3E-16 128.7 7.6 180 486-694 28-230 (276)
114 3rgz_A Protein brassinosteroid 99.2 6.8E-12 2.3E-16 148.8 7.6 53 538-590 495-551 (768)
115 3vq2_A TLR4, TOLL-like recepto 99.2 1.1E-11 3.7E-16 142.4 9.0 183 476-693 46-234 (606)
116 1fch_A Peroxisomal targeting s 99.2 6.6E-10 2.2E-14 117.5 22.0 190 34-238 108-347 (368)
117 2vsy_A XCC0866; transferase, g 99.2 1.8E-10 6.1E-15 131.3 18.8 162 38-226 3-167 (568)
118 3o6n_A APL1; leucine-rich repe 99.2 2.5E-11 8.5E-16 131.8 11.1 37 578-617 227-263 (390)
119 4g8a_A TOLL-like receptor 4; l 99.2 1.1E-11 3.9E-16 142.1 8.8 164 477-674 67-236 (635)
120 2xwt_C Thyrotropin receptor; s 99.2 6E-12 2E-16 127.3 5.7 122 538-674 85-217 (239)
121 1ziw_A TOLL-like receptor 3; i 99.2 1.7E-11 5.7E-16 142.9 10.2 80 538-618 102-187 (680)
122 2r9u_A Variable lymphocyte rec 99.2 4.7E-11 1.6E-15 115.3 11.5 98 537-674 16-117 (174)
123 2xot_A Amphoterin-induced prot 99.2 2E-11 6.9E-16 131.6 9.8 137 537-689 43-188 (361)
124 3qky_A Outer membrane assembly 99.2 9E-10 3.1E-14 111.8 21.5 183 26-225 17-233 (261)
125 3oja_A Leucine-rich immune mol 99.2 2.5E-12 8.6E-17 144.5 2.5 137 537-694 103-243 (487)
126 2wfh_A SLIT homolog 2 protein 99.2 3.2E-11 1.1E-15 118.4 10.0 117 537-694 14-132 (193)
127 2vq2_A PILW, putative fimbrial 99.2 1.2E-09 4.2E-14 106.3 21.3 169 34-229 52-224 (225)
128 2ho1_A Type 4 fimbrial biogene 99.2 1.2E-09 4E-14 109.3 21.7 166 35-227 82-249 (252)
129 4ecn_A Leucine-rich repeat pro 99.2 5.8E-12 2E-16 150.6 5.3 150 538-695 600-760 (876)
130 2z81_A CD282 antigen, TOLL-lik 99.2 4.5E-11 1.5E-15 135.5 12.3 115 538-674 392-509 (549)
131 2z81_A CD282 antigen, TOLL-lik 99.2 1.7E-11 5.9E-16 138.9 8.9 102 538-642 55-161 (549)
132 3ieg_A DNAJ homolog subfamily 99.2 1E-09 3.5E-14 114.7 21.7 170 34-230 47-231 (359)
133 1o6v_A Internalin A; bacterial 99.2 2.3E-11 7.8E-16 135.6 9.5 77 538-617 248-324 (466)
134 1w8a_A SLIT protein; signaling 99.2 5.6E-11 1.9E-15 116.4 11.1 121 538-674 13-138 (192)
135 3bz5_A Internalin-J, INLJ; leu 99.2 5.8E-11 2E-15 132.3 12.3 137 538-694 90-239 (457)
136 3vq2_A TLR4, TOLL-like recepto 99.2 1.4E-11 4.7E-16 141.6 7.3 122 538-674 429-557 (606)
137 3t6q_A CD180 antigen; protein- 99.2 1.6E-11 5.4E-16 141.0 7.6 144 538-694 330-482 (606)
138 3cv0_A Peroxisome targeting si 99.2 6.4E-10 2.2E-14 114.9 19.1 171 35-232 32-251 (327)
139 4glp_A Monocyte differentiatio 99.2 1.8E-11 6.1E-16 128.9 7.2 175 483-694 114-300 (310)
140 1wwl_A Monocyte differentiatio 99.2 2.5E-12 8.5E-17 135.7 0.3 138 538-694 154-302 (312)
141 2ond_A Cleavage stimulation fa 99.2 1.2E-09 4E-14 114.4 20.8 179 42-233 33-215 (308)
142 3gyz_A Chaperone protein IPGC; 99.2 1E-10 3.5E-15 110.3 11.2 114 48-175 25-138 (151)
143 2y4t_A DNAJ homolog subfamily 99.2 2.3E-09 7.8E-14 116.8 23.5 174 34-234 153-342 (450)
144 2xpi_A Anaphase-promoting comp 99.2 1.3E-09 4.3E-14 123.5 21.9 181 36-231 385-594 (597)
145 2o6s_A Variable lymphocyte rec 99.2 1.4E-10 4.9E-15 114.5 12.1 140 538-694 12-154 (208)
146 3gyz_A Chaperone protein IPGC; 99.2 5E-11 1.7E-15 112.5 8.4 117 91-221 22-138 (151)
147 2xwt_C Thyrotropin receptor; s 99.2 2.8E-11 9.4E-16 122.4 7.0 138 538-694 60-211 (239)
148 2je0_A Acidic leucine-rich nuc 99.2 5.5E-12 1.9E-16 117.9 1.6 112 484-618 15-129 (149)
149 1ziw_A TOLL-like receptor 3; i 99.2 6.4E-11 2.2E-15 138.0 10.9 142 538-694 459-615 (680)
150 3cv0_A Peroxisome targeting si 99.2 7.9E-10 2.7E-14 114.3 18.0 190 32-236 63-301 (327)
151 3g39_A Variable lymphocyte rec 99.2 1E-10 3.6E-15 112.3 10.4 98 537-674 13-114 (170)
152 3o53_A Protein LRIM1, AGAP0063 99.1 2.4E-11 8E-16 128.5 6.4 120 555-694 120-243 (317)
153 1wwl_A Monocyte differentiatio 99.1 2.8E-11 9.7E-16 127.6 6.8 122 536-675 176-309 (312)
154 3fp2_A TPR repeat-containing p 99.1 2.3E-09 8E-14 119.3 22.5 180 42-236 260-477 (537)
155 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 4E-11 1.4E-15 136.8 8.2 74 538-614 105-181 (562)
156 2z63_A TOLL-like receptor 4, v 99.1 7.2E-11 2.5E-15 134.2 9.9 162 479-674 45-212 (570)
157 3bz5_A Internalin-J, INLJ; leu 99.1 1.2E-10 4.1E-15 129.8 11.4 112 538-674 111-245 (457)
158 1xnf_A Lipoprotein NLPI; TPR, 99.1 6.8E-09 2.3E-13 104.6 23.4 187 31-233 50-261 (275)
159 2xpi_A Anaphase-promoting comp 99.1 3E-09 1E-13 120.5 23.0 187 35-236 350-565 (597)
160 1a9n_A U2A', U2A'; complex (nu 99.1 1.1E-11 3.7E-16 119.5 2.1 110 484-618 17-129 (176)
161 1xnf_A Lipoprotein NLPI; TPR, 99.1 2.7E-09 9.4E-14 107.6 19.8 165 42-233 22-190 (275)
162 1o6v_A Internalin A; bacterial 99.1 1.3E-10 4.4E-15 129.5 10.8 144 538-694 226-381 (466)
163 3j0a_A TOLL-like receptor 5; m 99.1 6.1E-11 2.1E-15 142.1 8.0 76 538-614 102-186 (844)
164 2gw1_A Mitochondrial precursor 99.1 1.9E-09 6.4E-14 119.1 19.3 165 42-232 321-494 (514)
165 2o6r_A Variable lymphocyte rec 99.1 4.4E-10 1.5E-14 108.1 12.1 122 538-674 12-136 (177)
166 2ond_A Cleavage stimulation fa 99.1 2.2E-09 7.5E-14 112.3 18.1 165 41-231 80-251 (308)
167 3cvr_A Invasion plasmid antige 99.1 2E-10 7E-15 131.2 10.7 121 538-674 105-242 (571)
168 4b8c_D Glucose-repressible alc 99.1 2E-11 6.7E-16 143.9 2.0 116 477-618 215-332 (727)
169 4glp_A Monocyte differentiatio 99.1 7.8E-11 2.7E-15 124.0 6.3 151 483-675 142-307 (310)
170 3mkr_A Coatomer subunit epsilo 99.1 9.5E-09 3.2E-13 107.2 22.0 164 41-235 81-248 (291)
171 2pzi_A Probable serine/threoni 99.1 7.8E-10 2.7E-14 129.3 15.0 140 32-187 441-580 (681)
172 4g1t_A Interferon-induced prot 99.1 2.7E-09 9.1E-14 117.3 18.5 188 38-236 152-349 (472)
173 3fp2_A TPR repeat-containing p 99.1 2.3E-09 7.8E-14 119.4 18.1 146 59-231 243-388 (537)
174 2vgx_A Chaperone SYCD; alterna 99.1 1.6E-09 5.5E-14 101.2 14.1 124 47-184 9-132 (148)
175 3cvr_A Invasion plasmid antige 99.1 2.8E-10 9.7E-15 130.0 10.0 135 538-694 85-236 (571)
176 4b8c_D Glucose-repressible alc 99.1 1.5E-10 5E-15 136.5 7.8 98 538-641 229-328 (727)
177 2gw1_A Mitochondrial precursor 99.1 3.1E-09 1.1E-13 117.3 18.1 192 29-236 242-464 (514)
178 4g1t_A Interferon-induced prot 99.0 1E-08 3.5E-13 112.6 22.2 175 34-231 104-291 (472)
179 1jl5_A Outer protein YOPM; leu 99.0 1.1E-10 3.8E-15 129.9 6.4 77 537-618 135-211 (454)
180 2z7x_B TOLL-like receptor 1, v 99.0 3.8E-10 1.3E-14 127.1 10.7 112 475-614 34-150 (520)
181 2vgx_A Chaperone SYCD; alterna 99.0 1.5E-09 5E-14 101.4 13.0 124 92-229 8-131 (148)
182 3j0a_A TOLL-like receptor 5; m 99.0 3E-10 1E-14 136.1 10.0 54 538-591 319-376 (844)
183 2z63_A TOLL-like receptor 4, v 99.0 2.7E-10 9.3E-15 129.4 8.5 124 538-674 33-161 (570)
184 2hr2_A Hypothetical protein; a 99.0 8E-10 2.7E-14 104.7 10.2 106 106-225 12-140 (159)
185 1w8a_A SLIT protein; signaling 99.0 2.6E-10 9E-15 111.6 7.2 102 538-643 34-140 (192)
186 2z7x_B TOLL-like receptor 1, v 99.0 2.5E-10 8.6E-15 128.6 7.7 119 538-674 5-127 (520)
187 2xcb_A PCRH, regulatory protei 99.0 1.8E-09 6.2E-14 99.5 11.8 127 46-186 5-131 (142)
188 3mkr_A Coatomer subunit epsilo 99.0 1.5E-08 5.1E-13 105.7 20.1 162 34-226 111-274 (291)
189 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 6E-10 2E-14 127.0 10.1 120 538-675 36-159 (562)
190 4ay9_X Follicle-stimulating ho 99.0 1.1E-10 3.7E-15 125.3 3.5 161 478-674 46-214 (350)
191 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.6E-08 5.3E-13 100.7 19.1 165 31-221 11-218 (225)
192 2r5s_A Uncharacterized protein 99.0 1.3E-09 4.6E-14 104.1 10.7 158 31-215 13-172 (176)
193 3upv_A Heat shock protein STI1 99.0 7.5E-09 2.6E-13 92.6 14.7 118 56-187 1-124 (126)
194 1p5q_A FKBP52, FK506-binding p 99.0 2.3E-09 7.8E-14 114.3 12.8 135 42-190 130-279 (336)
195 3g06_A SSPH2 (leucine-rich rep 99.0 1E-09 3.4E-14 126.8 10.6 53 538-592 126-196 (622)
196 2xcb_A PCRH, regulatory protei 99.0 1.9E-09 6.4E-14 99.3 10.4 125 92-230 5-129 (142)
197 3urz_A Uncharacterized protein 99.0 5.8E-09 2E-13 102.8 14.6 146 58-228 3-164 (208)
198 2hr2_A Hypothetical protein; a 99.0 2.7E-09 9.2E-14 101.0 11.5 112 59-184 11-145 (159)
199 3goz_A Leucine-rich repeat-con 98.9 1.4E-10 4.8E-15 124.9 1.9 131 538-674 85-237 (362)
200 3sz7_A HSC70 cochaperone (SGT) 98.9 9.6E-09 3.3E-13 96.6 14.2 116 55-184 7-122 (164)
201 2o6r_A Variable lymphocyte rec 98.9 2.6E-09 8.9E-14 102.6 9.7 102 538-643 33-138 (177)
202 3g39_A Variable lymphocyte rec 98.9 1.4E-09 4.7E-14 104.4 7.4 81 537-618 34-118 (170)
203 2ifg_A High affinity nerve gro 98.9 1.6E-09 5.3E-14 115.7 8.6 81 538-619 13-97 (347)
204 3as5_A MAMA; tetratricopeptide 98.9 4.3E-08 1.5E-12 91.8 17.0 151 59-235 8-158 (186)
205 3g06_A SSPH2 (leucine-rich rep 98.9 2.1E-09 7.1E-14 124.2 9.4 111 538-675 186-297 (622)
206 3upv_A Heat shock protein STI1 98.9 1.4E-08 4.6E-13 90.9 12.7 117 102-232 1-123 (126)
207 3qou_A Protein YBBN; thioredox 98.9 1.7E-08 5.9E-13 104.7 15.4 162 27-215 120-283 (287)
208 1ds9_A Outer arm dynein; leuci 98.9 9.6E-11 3.3E-15 115.1 -1.8 130 520-694 12-146 (198)
209 2ca6_A RAN GTPase-activating p 98.9 1.7E-10 5.7E-15 125.2 -0.3 131 538-674 164-315 (386)
210 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 3.3E-09 1.1E-13 118.1 10.1 135 42-190 251-400 (457)
211 2r9u_A Variable lymphocyte rec 98.9 2.3E-09 7.9E-14 103.3 7.7 80 538-618 38-121 (174)
212 3sz7_A HSC70 cochaperone (SGT) 98.9 1.7E-08 5.8E-13 94.9 13.4 116 101-230 7-122 (164)
213 2ca6_A RAN GTPase-activating p 98.9 1.1E-10 3.6E-15 126.7 -2.4 187 483-694 91-309 (386)
214 1qqe_A Vesicular transport pro 98.9 3.2E-08 1.1E-12 102.8 16.6 167 34-226 47-238 (292)
215 2e2e_A Formate-dependent nitri 98.9 2.8E-08 9.5E-13 94.3 14.6 133 85-230 24-158 (177)
216 2e2e_A Formate-dependent nitri 98.9 2.1E-08 7.1E-13 95.2 13.5 128 36-178 22-152 (177)
217 3qky_A Outer membrane assembly 98.9 5E-08 1.7E-12 98.8 17.2 155 52-232 8-196 (261)
218 3qou_A Protein YBBN; thioredox 98.8 5.2E-08 1.8E-12 101.1 16.9 171 38-236 98-270 (287)
219 2r5s_A Uncharacterized protein 98.8 1.2E-08 4E-13 97.4 10.5 154 55-235 2-158 (176)
220 1jl5_A Outer protein YOPM; leu 98.8 6E-09 2E-13 115.9 9.5 105 482-618 149-253 (454)
221 2ooe_A Cleavage stimulation fa 98.8 1.2E-07 4.2E-12 106.7 20.0 171 37-233 292-476 (530)
222 2fo7_A Synthetic consensus TPR 98.8 2.2E-07 7.5E-12 81.8 17.5 135 60-220 2-136 (136)
223 2ooe_A Cleavage stimulation fa 98.8 7E-08 2.4E-12 108.7 17.7 174 42-233 255-437 (530)
224 1p5q_A FKBP52, FK506-binding p 98.8 8E-08 2.7E-12 102.2 17.0 129 26-168 149-292 (336)
225 2lni_A Stress-induced-phosphop 98.8 7.4E-08 2.5E-12 85.5 14.2 120 55-188 12-131 (133)
226 3goz_A Leucine-rich repeat-con 98.8 1.3E-09 4.4E-14 117.3 2.9 134 538-674 143-296 (362)
227 2c2l_A CHIP, carboxy terminus 98.8 5.4E-08 1.9E-12 100.7 14.7 171 29-231 9-179 (281)
228 4ay9_X Follicle-stimulating ho 98.8 5.4E-09 1.8E-13 112.0 7.2 81 537-618 34-120 (350)
229 2ast_B S-phase kinase-associat 98.8 1.6E-09 5.4E-14 114.7 2.7 146 538-698 147-305 (336)
230 1a17_A Serine/threonine protei 98.8 4.7E-07 1.6E-11 83.7 18.5 133 59-215 13-145 (166)
231 2vyi_A SGTA protein; chaperone 98.7 1.3E-07 4.3E-12 83.2 13.9 122 54-189 7-128 (131)
232 2ast_B S-phase kinase-associat 98.7 8.2E-10 2.8E-14 116.9 -0.8 175 484-694 91-278 (336)
233 1a17_A Serine/threonine protei 98.7 3.8E-07 1.3E-11 84.3 17.5 126 26-166 15-142 (166)
234 2fo7_A Synthetic consensus TPR 98.7 6.1E-07 2.1E-11 78.8 17.4 125 35-174 12-136 (136)
235 3q49_B STIP1 homology and U bo 98.7 3E-07 1E-11 82.6 15.6 120 53-186 3-127 (137)
236 3rkv_A Putative peptidylprolyl 98.7 3.3E-08 1.1E-12 92.7 9.4 112 25-150 12-142 (162)
237 2vsy_A XCC0866; transferase, g 98.7 7.5E-08 2.6E-12 109.5 14.2 136 85-234 3-138 (568)
238 1z7x_W Ribonuclease inhibitor; 98.7 7.6E-10 2.6E-14 122.4 -2.5 33 663-695 371-405 (461)
239 2vyi_A SGTA protein; chaperone 98.7 5.1E-07 1.7E-11 79.3 16.5 115 28-156 16-130 (131)
240 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 9.7E-08 3.3E-12 106.1 14.4 124 26-163 270-408 (457)
241 3rkv_A Putative peptidylprolyl 98.7 1.8E-07 6.2E-12 87.6 14.1 117 59-189 11-146 (162)
242 2yhc_A BAMD, UPF0169 lipoprote 98.7 5.1E-07 1.7E-11 89.6 18.0 166 58-237 3-200 (225)
243 2lni_A Stress-induced-phosphop 98.7 1.5E-07 5.1E-12 83.5 12.6 119 100-232 11-129 (133)
244 1hh8_A P67PHOX, NCF-2, neutrop 98.7 3.5E-07 1.2E-11 88.9 16.3 136 61-225 8-159 (213)
245 3q49_B STIP1 homology and U bo 98.7 1.8E-07 6.3E-12 84.1 13.3 120 99-232 3-127 (137)
246 1hh8_A P67PHOX, NCF-2, neutrop 98.7 4.5E-07 1.5E-11 88.1 16.9 129 29-175 11-155 (213)
247 1z7x_W Ribonuclease inhibitor; 98.7 1.2E-09 4.3E-14 120.6 -1.8 172 479-675 220-411 (461)
248 1hxi_A PEX5, peroxisome target 98.7 1.9E-07 6.6E-12 83.7 12.8 103 106-222 18-120 (121)
249 2if4_A ATFKBP42; FKBP-like, al 98.6 1E-07 3.5E-12 101.6 11.6 136 26-175 181-333 (338)
250 1zu2_A Mitochondrial import re 98.6 1.2E-07 4.2E-12 89.5 10.7 98 42-141 19-126 (158)
251 1wao_1 Serine/threonine protei 98.6 7E-08 2.4E-12 107.9 10.4 132 35-181 17-161 (477)
252 1elw_A TPR1-domain of HOP; HOP 98.6 6.9E-07 2.4E-11 77.0 14.6 114 58-185 3-116 (118)
253 2kck_A TPR repeat; tetratricop 98.6 2.4E-07 8.2E-12 79.3 11.1 108 54-175 1-111 (112)
254 1zu2_A Mitochondrial import re 98.6 1.8E-07 6.1E-12 88.4 11.0 119 84-229 15-133 (158)
255 2dba_A Smooth muscle cell asso 98.6 6.4E-07 2.2E-11 81.0 14.6 121 99-233 22-145 (148)
256 1qqe_A Vesicular transport pro 98.6 1.2E-07 4.2E-12 98.3 10.9 178 34-231 87-284 (292)
257 2dba_A Smooth muscle cell asso 98.6 7.7E-07 2.6E-11 80.5 14.9 118 53-184 22-142 (148)
258 2fbn_A 70 kDa peptidylprolyl i 98.6 4.6E-07 1.6E-11 87.8 14.2 122 20-155 34-171 (198)
259 2fbn_A 70 kDa peptidylprolyl i 98.6 1.4E-07 4.9E-12 91.4 10.4 132 45-190 24-171 (198)
260 1hxi_A PEX5, peroxisome target 98.6 2.6E-07 8.8E-12 82.9 11.1 102 60-175 18-119 (121)
261 1na0_A Designed protein CTPR3; 98.6 1.6E-06 5.6E-11 75.3 16.0 120 54-187 3-123 (125)
262 3sb4_A Hypothetical leucine ri 98.6 2.7E-08 9.1E-13 105.5 5.2 184 485-694 48-327 (329)
263 2kck_A TPR repeat; tetratricop 98.6 2.4E-07 8.3E-12 79.3 10.3 108 100-221 1-111 (112)
264 1elw_A TPR1-domain of HOP; HOP 98.6 9.9E-07 3.4E-11 76.0 14.3 113 105-231 4-116 (118)
265 2ifg_A High affinity nerve gro 98.6 5.6E-08 1.9E-12 103.5 7.1 78 538-617 36-118 (347)
266 2c2l_A CHIP, carboxy terminus 98.6 6.5E-07 2.2E-11 92.5 14.8 148 56-232 1-148 (281)
267 4gcn_A Protein STI-1; structur 98.6 3E-07 1E-11 83.1 10.7 109 106-221 9-117 (127)
268 3nf1_A KLC 1, kinesin light ch 98.6 7.9E-07 2.7E-11 90.7 15.0 177 29-232 32-249 (311)
269 3nf1_A KLC 1, kinesin light ch 98.5 8.4E-07 2.9E-11 90.6 14.7 158 35-219 80-310 (311)
270 1ouv_A Conserved hypothetical 98.5 7.9E-06 2.7E-10 82.8 21.8 165 42-233 59-230 (273)
271 1wao_1 Serine/threonine protei 98.5 2.9E-08 9.9E-13 111.1 3.8 128 85-224 20-158 (477)
272 2if4_A ATFKBP42; FKBP-like, al 98.5 6.3E-08 2.2E-12 103.2 6.3 144 53-221 173-333 (338)
273 3edt_B KLC 2, kinesin light ch 98.5 1.1E-06 3.8E-11 88.0 15.2 166 42-233 18-224 (283)
274 4gcn_A Protein STI-1; structur 98.5 3.5E-07 1.2E-11 82.7 10.3 105 56-174 5-116 (127)
275 3rw6_A Nuclear RNA export fact 98.5 1.9E-08 6.5E-13 103.6 1.8 112 552-699 138-262 (267)
276 4a1s_A PINS, partner of inscut 98.5 7.6E-07 2.6E-11 95.5 14.3 183 25-234 49-276 (411)
277 3edt_B KLC 2, kinesin light ch 98.5 2.1E-06 7.2E-11 85.9 15.5 124 32-170 51-198 (283)
278 1ihg_A Cyclophilin 40; ppiase 98.5 6E-07 2.1E-11 97.0 11.5 117 26-156 225-357 (370)
279 1na0_A Designed protein CTPR3; 98.4 5.1E-06 1.8E-10 72.0 15.2 117 101-231 4-121 (125)
280 1ouv_A Conserved hypothetical 98.4 2E-05 6.8E-10 79.8 21.8 159 42-232 23-193 (273)
281 3sf4_A G-protein-signaling mod 98.4 1.7E-06 5.9E-11 91.8 13.9 176 31-233 16-239 (406)
282 2qfc_A PLCR protein; TPR, HTH, 98.4 2.7E-05 9.1E-10 80.3 22.3 167 23-216 74-266 (293)
283 3ulq_A Response regulator aspa 98.4 5E-06 1.7E-10 89.0 16.9 173 34-233 113-315 (383)
284 4f3v_A ESX-1 secretion system 98.4 6.6E-07 2.3E-11 92.7 9.2 185 22-225 5-245 (282)
285 3k9i_A BH0479 protein; putativ 98.4 6.3E-07 2.2E-11 79.2 7.3 100 38-151 4-106 (117)
286 3k9i_A BH0479 protein; putativ 98.4 4.3E-07 1.5E-11 80.3 6.2 98 121-231 5-105 (117)
287 2xev_A YBGF; tetratricopeptide 98.3 1.3E-05 4.6E-10 70.8 15.6 104 34-151 12-121 (129)
288 3ro2_A PINS homolog, G-protein 98.3 3.9E-06 1.3E-10 85.9 13.7 176 31-233 12-235 (338)
289 1ihg_A Cyclophilin 40; ppiase 98.3 3.8E-06 1.3E-10 90.7 14.2 118 59-190 223-356 (370)
290 2ifu_A Gamma-SNAP; membrane fu 98.3 4.3E-06 1.5E-10 87.1 14.0 163 34-225 46-232 (307)
291 1elr_A TPR2A-domain of HOP; HO 98.3 6.8E-06 2.3E-10 72.0 13.1 118 56-188 1-125 (131)
292 2xev_A YBGF; tetratricopeptide 98.3 1.4E-05 4.6E-10 70.8 14.4 109 62-184 5-119 (129)
293 3u3w_A Transcriptional activat 98.3 1.6E-05 5.4E-10 82.0 16.9 165 28-216 79-266 (293)
294 3un9_A NLR family member X1; l 98.2 3.7E-08 1.3E-12 106.7 -4.1 132 538-675 106-252 (372)
295 1elr_A TPR2A-domain of HOP; HO 98.2 1.4E-05 4.7E-10 70.0 12.8 116 103-233 2-124 (131)
296 3un9_A NLR family member X1; l 98.2 4.3E-08 1.5E-12 106.1 -5.8 150 538-694 77-245 (372)
297 4a1s_A PINS, partner of inscut 98.2 4.3E-06 1.5E-10 89.6 9.9 171 36-233 98-315 (411)
298 2kat_A Uncharacterized protein 98.2 1.2E-05 4E-10 70.4 10.9 98 89-188 3-102 (115)
299 2kat_A Uncharacterized protein 98.1 1E-05 3.4E-10 70.8 9.9 87 43-142 3-89 (115)
300 3sf4_A G-protein-signaling mod 98.1 6.3E-06 2.1E-10 87.4 10.0 172 34-232 57-278 (406)
301 3ro2_A PINS homolog, G-protein 98.0 1.7E-05 5.7E-10 81.1 11.1 173 34-233 53-275 (338)
302 3ogk_B Coronatine-insensitive 98.0 8.4E-07 2.9E-11 101.1 1.3 72 538-611 169-252 (592)
303 3q15_A PSP28, response regulat 98.0 0.00012 4E-09 78.2 17.6 159 34-219 111-293 (378)
304 1na3_A Designed protein CTPR2; 97.9 7.5E-05 2.6E-09 61.4 11.2 82 58-152 8-89 (91)
305 2l6j_A TPR repeat-containing p 97.9 6.1E-05 2.1E-09 64.4 10.5 83 59-154 4-92 (111)
306 3ogk_B Coronatine-insensitive 97.9 9.2E-06 3.2E-10 92.4 6.2 108 573-695 266-385 (592)
307 3ulq_A Response regulator aspa 97.9 6.7E-05 2.3E-09 80.1 12.0 149 61-235 105-278 (383)
308 3ma5_A Tetratricopeptide repea 97.8 5E-05 1.7E-09 65.1 8.6 70 101-172 3-72 (100)
309 1na3_A Designed protein CTPR2; 97.8 9.8E-05 3.4E-09 60.7 10.0 83 103-187 7-89 (91)
310 2l6j_A TPR repeat-containing p 97.8 0.0001 3.5E-09 62.9 10.4 85 104-190 3-93 (111)
311 2kc7_A BFR218_protein; tetratr 97.8 3E-05 1E-09 65.6 6.7 81 37-139 13-94 (99)
312 3rjv_A Putative SEL1 repeat pr 97.8 0.00028 9.5E-09 69.2 14.6 162 42-231 3-172 (212)
313 3ma5_A Tetratricopeptide repea 97.8 6.4E-05 2.2E-09 64.4 8.7 54 85-139 21-74 (100)
314 2kc7_A BFR218_protein; tetratr 97.8 4E-05 1.4E-09 64.7 7.1 90 111-222 6-96 (99)
315 3sb4_A Hypothetical leucine ri 97.8 2E-05 6.9E-10 83.2 6.3 78 538-618 231-313 (329)
316 2qfc_A PLCR protein; TPR, HTH, 97.7 0.0006 2.1E-08 70.0 16.4 137 85-235 89-250 (293)
317 2ifu_A Gamma-SNAP; membrane fu 97.7 0.00041 1.4E-08 71.9 15.1 143 38-222 30-190 (307)
318 3gw4_A Uncharacterized protein 97.7 0.00027 9.3E-09 67.2 12.6 160 37-224 5-184 (203)
319 2p1m_B Transport inhibitor res 97.7 7.1E-06 2.4E-10 93.3 0.2 19 480-498 60-78 (594)
320 4fdw_A Leucine rich hypothetic 97.6 4E-05 1.4E-09 83.6 6.1 118 538-674 231-357 (401)
321 3rw6_A Nuclear RNA export fact 97.6 3.4E-05 1.2E-09 79.3 3.9 61 554-615 169-233 (267)
322 1io0_A Tropomodulin; LRR prote 97.6 1.2E-05 4E-10 78.0 0.3 104 538-674 41-163 (185)
323 4fdw_A Leucine rich hypothetic 97.5 0.0001 3.5E-09 80.4 7.0 76 538-618 162-241 (401)
324 1io0_A Tropomodulin; LRR prote 97.4 1.7E-05 5.9E-10 76.8 -0.5 119 479-616 29-165 (185)
325 3rjv_A Putative SEL1 repeat pr 97.4 0.0047 1.6E-07 60.2 16.9 167 37-227 31-206 (212)
326 3ro3_A PINS homolog, G-protein 97.4 0.0015 5.1E-08 58.6 12.2 133 60-218 10-160 (164)
327 3u3w_A Transcriptional activat 97.3 0.0015 5.2E-08 66.9 13.1 120 37-170 128-266 (293)
328 2p1m_B Transport inhibitor res 97.3 2.2E-05 7.4E-10 89.3 -1.9 33 658-691 501-534 (594)
329 3q15_A PSP28, response regulat 97.3 0.0015 5E-08 69.5 12.5 150 60-235 102-275 (378)
330 2xm6_A Protein corresponding t 97.2 0.0078 2.7E-07 66.4 17.6 162 42-227 276-446 (490)
331 4f3v_A ESX-1 secretion system 97.2 0.00078 2.7E-08 69.6 8.6 132 30-178 108-244 (282)
332 1hz4_A MALT regulatory protein 97.2 0.0092 3.1E-07 62.7 17.2 155 36-217 26-204 (373)
333 3ro3_A PINS homolog, G-protein 97.1 0.0034 1.1E-07 56.2 11.7 123 34-171 19-159 (164)
334 3ly7_A Transcriptional activat 97.1 0.012 4.2E-07 62.7 16.9 157 49-230 184-352 (372)
335 4e6h_A MRNA 3'-END-processing 97.1 0.0086 2.9E-07 69.5 16.9 166 43-233 327-517 (679)
336 3ly7_A Transcriptional activat 97.0 0.007 2.4E-07 64.6 14.2 129 42-175 216-344 (372)
337 3e4b_A ALGK; tetratricopeptide 97.0 0.017 5.7E-07 63.4 17.7 168 41-234 195-367 (452)
338 3e4b_A ALGK; tetratricopeptide 97.0 0.011 3.8E-07 64.9 16.1 162 43-233 163-330 (452)
339 2xm6_A Protein corresponding t 96.9 0.038 1.3E-06 60.8 19.3 166 42-233 240-411 (490)
340 1xi4_A Clathrin heavy chain; a 96.8 0.038 1.3E-06 67.9 19.9 170 32-234 1113-1327(1630)
341 3gw4_A Uncharacterized protein 96.7 0.0087 3E-07 56.5 10.7 127 32-173 34-179 (203)
342 1xi4_A Clathrin heavy chain; a 96.7 0.037 1.3E-06 68.1 18.1 140 56-226 1102-1255(1630)
343 2ra8_A Uncharacterized protein 96.6 0.00027 9.2E-09 75.9 -0.7 131 538-675 177-320 (362)
344 3e4g_A ATP synthase subunit S, 96.2 0.00092 3.2E-08 64.1 0.6 100 555-692 61-171 (176)
345 2ra8_A Uncharacterized protein 96.1 0.0022 7.5E-08 68.8 2.8 136 550-694 167-313 (362)
346 1hz4_A MALT regulatory protein 96.0 0.11 3.9E-06 54.2 15.6 121 86-220 29-168 (373)
347 1pc2_A Mitochondria fission pr 96.0 0.075 2.6E-06 49.4 12.2 99 91-190 18-120 (152)
348 3bee_A Putative YFRE protein; 95.9 0.028 9.7E-07 47.6 8.7 74 55-138 2-75 (93)
349 3rfe_A Platelet glycoprotein I 95.9 0.008 2.8E-07 54.5 5.2 51 538-589 13-67 (130)
350 1pc2_A Mitochondria fission pr 95.7 0.094 3.2E-06 48.7 11.8 66 85-151 49-116 (152)
351 3rfe_A Platelet glycoprotein I 95.7 0.014 5E-07 52.7 6.1 55 558-615 11-68 (130)
352 3bee_A Putative YFRE protein; 95.7 0.07 2.4E-06 45.1 10.0 63 29-103 13-75 (93)
353 3u64_A Protein TP_0956; tetrat 95.6 0.26 8.9E-06 50.7 15.7 126 47-174 140-273 (301)
354 4e6h_A MRNA 3'-END-processing 95.5 0.31 1.1E-05 56.4 18.0 160 42-226 360-546 (679)
355 3e4g_A ATP synthase subunit S, 95.3 0.0038 1.3E-07 59.7 0.9 78 538-616 66-154 (176)
356 4b4t_Q 26S proteasome regulato 95.3 0.2 7E-06 53.2 14.7 158 35-218 15-206 (434)
357 3mv2_B Coatomer subunit epsilo 95.1 0.18 6.2E-06 52.5 13.0 153 44-225 85-259 (310)
358 1klx_A Cysteine rich protein B 95.0 0.44 1.5E-05 42.8 13.6 116 83-216 7-126 (138)
359 3mv2_B Coatomer subunit epsilo 94.5 0.57 1.9E-05 48.7 14.7 158 37-226 113-292 (310)
360 3qww_A SET and MYND domain-con 94.0 0.29 1E-05 53.4 11.8 101 23-137 297-413 (433)
361 3u64_A Protein TP_0956; tetrat 93.8 0.25 8.7E-06 50.7 10.0 91 42-139 180-273 (301)
362 1b89_A Protein (clathrin heavy 93.7 0.075 2.6E-06 58.1 6.4 128 87-235 164-296 (449)
363 1pgv_A TMD-1, tropomodulin TMD 93.6 0.018 6E-07 56.2 1.1 75 538-612 46-136 (197)
364 3n71_A Histone lysine methyltr 93.2 0.44 1.5E-05 52.9 11.7 102 21-136 306-423 (490)
365 4gt6_A Cell surface protein; l 93.1 0.038 1.3E-06 59.3 2.9 76 538-618 270-349 (394)
366 1klx_A Cysteine rich protein B 93.0 1.9 6.4E-05 38.5 13.8 109 42-171 12-127 (138)
367 4b4t_Q 26S proteasome regulato 92.7 0.76 2.6E-05 48.6 12.5 166 36-217 67-246 (434)
368 4gt6_A Cell surface protein; l 92.4 0.19 6.5E-06 53.8 7.2 112 545-674 253-369 (394)
369 4h09_A Hypothetical leucine ri 92.2 0.12 4.2E-06 54.8 5.4 59 550-610 258-318 (379)
370 1pgv_A TMD-1, tropomodulin TMD 91.9 0.04 1.4E-06 53.6 1.0 79 537-615 74-170 (197)
371 2v5f_A Prolyl 4-hydroxylase su 91.7 0.96 3.3E-05 38.3 9.6 65 85-150 19-90 (104)
372 4fs7_A Uncharacterized protein 90.5 0.22 7.5E-06 53.3 5.1 122 550-693 271-393 (394)
373 4h09_A Hypothetical leucine ri 90.2 0.32 1.1E-05 51.5 6.1 77 538-618 268-348 (379)
374 4fs7_A Uncharacterized protein 89.6 0.24 8.2E-06 53.0 4.5 65 550-618 292-358 (394)
375 2v5f_A Prolyl 4-hydroxylase su 88.9 3.1 0.0001 35.1 10.3 72 32-116 13-91 (104)
376 2uy1_A Cleavage stimulation fa 88.6 11 0.00037 41.5 17.3 182 21-230 11-255 (493)
377 1b89_A Protein (clathrin heavy 88.6 0.84 2.9E-05 49.8 7.8 34 201-234 221-254 (449)
378 3qwp_A SET and MYND domain-con 88.4 1.2 4.2E-05 48.4 9.1 98 25-136 288-401 (429)
379 2uy1_A Cleavage stimulation fa 87.0 24 0.00082 38.6 18.8 56 42-110 196-251 (493)
380 1nzn_A CGI-135 protein, fissio 86.3 5.3 0.00018 35.6 10.4 66 85-151 52-119 (126)
381 3o48_A Mitochondria fission 1 85.8 9.1 0.00031 34.4 11.6 66 85-151 57-123 (134)
382 1y8m_A FIS1; mitochondria, unk 85.6 18 0.00062 32.8 13.7 65 85-150 56-121 (144)
383 3qww_A SET and MYND domain-con 77.7 4.3 0.00015 44.1 7.8 84 120-216 312-411 (433)
384 1nzn_A CGI-135 protein, fissio 76.7 14 0.00048 32.8 9.5 96 92-188 22-121 (126)
385 3o48_A Mitochondria fission 1 70.6 11 0.00039 33.8 7.3 101 87-188 19-125 (134)
386 1y8m_A FIS1; mitochondria, unk 68.9 68 0.0023 29.1 12.2 103 87-190 18-126 (144)
387 3n71_A Histone lysine methyltr 66.1 20 0.00067 39.5 9.8 84 85-170 323-422 (490)
388 3qwp_A SET and MYND domain-con 52.8 29 0.001 37.3 8.0 98 105-215 281-399 (429)
389 4gns_B Protein CSD3, chitin bi 38.0 2.2E+02 0.0075 32.9 12.7 116 40-161 264-391 (754)
390 2lz0_A Uncharacterized protein 25.4 75 0.0026 26.6 4.5 45 542-587 5-53 (100)
No 1
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=100.00 E-value=1.8e-74 Score=662.85 Aligned_cols=554 Identities=30% Similarity=0.478 Sum_probs=441.9
Q ss_pred CCCCcCCCCC-hHHHHH---HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccC
Q 005381 1 MHGRPRKPLK-PEDAAA---SAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEN 76 (699)
Q Consensus 1 mhg~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~ 76 (699)
||||+|+.++ +++++| +.+|++.|++++++|++++..+++++|||++|+++|.+||++||||++||+++..+++
T Consensus 1 mhg~~~~~~~~~~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~-- 78 (567)
T 1dce_A 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLET-- 78 (567)
T ss_dssp CCSCBCSSCSTTSSCCSCCCCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT--
T ss_pred CCCCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhccc--
Confidence 9999998444 444333 4788999999999999999999999999999999999999999999999999999975
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCC
Q 005381 77 DSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH-SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR 155 (699)
Q Consensus 77 ~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~-~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~ 155 (699)
+.+++.....+++||++++++|+.+||+|+||+||+|++.++. ..+++|+++|++++++||+|||||+||+|++..++.
T Consensus 79 ~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~ 158 (567)
T 1dce_A 79 EKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV 158 (567)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC
T ss_pred ccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC
Confidence 2334666778999999999999999999999999999999873 267999999999999999999999999999999995
Q ss_pred ChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCc--cchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 156 SEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF--VSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 156 ~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~--~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
..++|++|++++|+.||+|+||||||+.++..+++....+. ....+.+++|++++++||+++|+|+|+|+|+||++..
T Consensus 159 ~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 159 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 55899999999999999999999999999999865422221 1234679999999999999999999999999999998
Q ss_pred cCCCCCCcccccCCCCCCcceecCCccccCCCCCCCccccCCCCccceEEeecccccccc-ccceEEecccCCCccceee
Q 005381 234 TVRVDSPQLVSSWPTPGSDLILLGDRCLDGCASSPFTRFHLDSRTFPLVLYFNQAVEGVN-SSTITVDSELNTNKDLVWK 312 (699)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~ 312 (699)
..+.+ .+. |+ +......+++++|++||.... .+|+.+.+... ...+.|+
T Consensus 239 ~~~~~---~~~---------------~~-----------~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~-~~~~~W~ 288 (567)
T 1dce_A 239 AEPHD---VLC---------------CV-----------HVSREEACLSVCFSRPLTVGSRMGTLLLMVDEA-PLSVEWR 288 (567)
T ss_dssp CCCCS---CEE---------------EE-----------EEETTTTEEEEEEEEEECTTBTTBCEEEEESSS-EECCCCB
T ss_pred CCCcc---cee---------------ee-----------eeccCCceEEEEeccceeccccccceEEeecCc-ccceeec
Confidence 75422 111 11 112346678999999998642 33467666543 6799999
Q ss_pred eCCCCCCccceeEEEeccCCCCCCCCCCccceEEecCcccccccCCCCccCCCccceEEEEEeecccccccccccceeec
Q 005381 313 PLSSCNSKAAQVWVTQLNLPDGNTHSSKVFPVEVSLGHSQGIISSSGFHYSNPFCFAFRVSLQFVETQPVEALGKEIISW 392 (699)
Q Consensus 313 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (699)
|+. .++++++||+++++.+...++ ..+|+|+|.+++.++. .. |... .+..+.|
T Consensus 289 ~~~-~~~~~~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~-------------------~~~~-~~~~~~~ 341 (567)
T 1dce_A 289 TPD-GRNRPSHVWLCDLPAASLNDQ-LPQHTFRVIWTGSDSQ-----KE-------------------CVLL-KDRPECW 341 (567)
T ss_dssp CTT-SSCCSEEEEEEECCGGGTSTT-SSEEEEEEEETTTTEE-----EE-------------------EEEE-TTCSEEE
T ss_pred cCC-cccccceeEEeecCccccccc-cccceEEEeeccCCCC-----cc-------------------cccc-CCCchhh
Confidence 987 678899999999998664333 4567788877766532 11 1111 2345556
Q ss_pred cCCCccccccccCCCCCccccccccccccCccchhhhhHHHHHHHHHHHHhhhh-ccccccccccHHHHHhhcccCCCCC
Q 005381 393 RDESFHNYNAHSQDSSPISSLYQLSIKNDNELTDFEWRAATIAKEIDHFRELLS-LINCKIGKLTLARLLMAHDAMMCPP 471 (699)
Q Consensus 393 ~~~~~~~~~~~~~~~~~l~~~~~lsi~~~~~~~~~~~~~~~L~~el~~~~~L~~-~p~nk~~~Ltl~~ll~~~~~l~~~~ 471 (699)
.+... ...+|. .|.+ +...++.||.+|..|.+|.+ .++++|.+.++..++..++.
T Consensus 342 ~~d~~--------~~~~L~---~L~L--------s~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~----- 397 (567)
T 1dce_A 342 CRDSA--------TDEQLF---RCEL--------SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDP----- 397 (567)
T ss_dssp EECCS--------TTTTSS---SCCC--------CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT-----
T ss_pred hcccc--------cCccce---eccC--------ChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhccc-----
Confidence 32111 112333 4444 55688999999999999999 78999998888888877554
Q ss_pred CCcCCCcHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCC
Q 005381 472 ANKISHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSF 551 (699)
Q Consensus 472 ~~~~~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l 551 (699)
.+..++.++.+++|+.||+.+.+.+.+++.+++..+....+. . ..++ .|+|++|.|+.+|.+
T Consensus 398 ---~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~---~-----~~L~-------~L~Ls~n~l~~lp~~ 459 (567)
T 1dce_A 398 ---LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME---Y-----ADVR-------VLHLAHKDLTVLCHL 459 (567)
T ss_dssp ---GGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH---H-----TTCS-------EEECTTSCCSSCCCG
T ss_pred ---ccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccC---c-----cCce-------EEEecCCCCCCCcCc
Confidence 478889999999999999655666778888777666332121 1 1122 399999999999999
Q ss_pred CCCcccCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCC
Q 005381 552 DKLLWVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPL 630 (699)
Q Consensus 552 ~~L~~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~l 630 (699)
..+++|+.|+|++|.|+.+|. +..|++|+.|+|++|.|+++ | .++.+++|+.|+|++|+|+.++.
T Consensus 460 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l--p-~l~~l~~L~~L~Ls~N~l~~~~~----------- 525 (567)
T 1dce_A 460 EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--D-GVANLPRLQELLLCNNRLQQSAA----------- 525 (567)
T ss_dssp GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGTTCSSCCEEECCSSCCCSSST-----------
T ss_pred cccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC--c-ccCCCCCCcEEECCCCCCCCCCC-----------
Confidence 999999999999999999998 99999999999999999987 3 78999999999999999998720
Q ss_pred cccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC-CCccchHHHhhcCCcccccc
Q 005381 631 SHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI-VNEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 631 l~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~~~~~~~~~~~l~~L~~LD 694 (699)
|..+..+ +|+.|+|++|+| ..+.....+...+|+|+.||
T Consensus 526 -------------------------p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 526 -------------------------IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -------------------------TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -------------------------cHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 2345667 899999999999 44445556677799999986
No 2
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=100.00 E-value=7.7e-54 Score=456.92 Aligned_cols=316 Identities=36% Similarity=0.604 Sum_probs=261.7
Q ss_pred CCCCcCCCCChHHHH-H---HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccC
Q 005381 1 MHGRPRKPLKPEDAA-A---SAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEN 76 (699)
Q Consensus 1 mhg~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~ 76 (699)
||||+|+++|+|+++ + +++|++.|+.+++++++++++|++|++||++|+++|.+||++|||||+||.++..++.
T Consensus 2 mhg~~r~~~~~~~~~~~~~~~~~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~-- 79 (331)
T 3dss_A 2 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLET-- 79 (331)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH--
T ss_pred CCCCcCCCCcHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcc--
Confidence 999999855554333 3 4567888899999999999999999999999999999999999999999999999865
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCC
Q 005381 77 DSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHS-SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR 155 (699)
Q Consensus 77 ~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~-~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~ 155 (699)
..+|+.....+++||.+++.+|..|||+|++|+||+|++.++.. .+++|+++|++++++||+|||||+||+|++..++.
T Consensus 80 ~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~ 159 (331)
T 3dss_A 80 EKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV 159 (331)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred cccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc
Confidence 12345566679999999999999999999999999999998753 58999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhcc--CccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 156 SEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVE--GFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 156 ~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~--~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
+.++|++|++++|+.||+|+||||||++++..+...... ......+++++|++++++||+++|+|+|+|+|+|||+..
T Consensus 160 ~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 160 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 768999999999999999999999999999998543211 112234679999999999999999999999999999965
Q ss_pred cCCCCCCcccccCCCCCCcceecCCccccCCCCCCCccccCCCCccceEEeeccccccccccceEEecccCCCccceeee
Q 005381 234 TVRVDSPQLVSSWPTPGSDLILLGDRCLDGCASSPFTRFHLDSRTFPLVLYFNQAVEGVNSSTITVDSELNTNKDLVWKP 313 (699)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 313 (699)
...
T Consensus 240 ~~~----------------------------------------------------------------------------- 242 (331)
T 3dss_A 240 GSG----------------------------------------------------------------------------- 242 (331)
T ss_dssp SSC-----------------------------------------------------------------------------
T ss_pred ccC-----------------------------------------------------------------------------
Confidence 200
Q ss_pred CCCCCCccceeEEEeccCCCCCCCCCCccceEEecCcccccccCCCCccCCCccceEEEEEeecccccccccccceeecc
Q 005381 314 LSSCNSKAAQVWVTQLNLPDGNTHSSKVFPVEVSLGHSQGIISSSGFHYSNPFCFAFRVSLQFVETQPVEALGKEIISWR 393 (699)
Q Consensus 314 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (699)
. . . +
T Consensus 243 -------~--------~--~--------------------~--------------------------------------- 246 (331)
T 3dss_A 243 -------R--------C--E--------------------L--------------------------------------- 246 (331)
T ss_dssp -------G--------G--G--------------------C---------------------------------------
T ss_pred -------c--------c--c--------------------c---------------------------------------
Confidence 0 0 0 0
Q ss_pred CCCccccccccCCCCCccccccccccccCccchhhhhHHHHHHHHHHHHhhhh-ccccccccccHHHHHhhcccCCCCCC
Q 005381 394 DESFHNYNAHSQDSSPISSLYQLSIKNDNELTDFEWRAATIAKEIDHFRELLS-LINCKIGKLTLARLLMAHDAMMCPPA 472 (699)
Q Consensus 394 ~~~~~~~~~~~~~~~~l~~~~~lsi~~~~~~~~~~~~~~~L~~el~~~~~L~~-~p~nk~~~Ltl~~ll~~~~~l~~~~~ 472 (699)
+ .-....|.+||..++++++ +|+|+|++++++.++..++.
T Consensus 247 --~-------------------------------~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~------ 287 (331)
T 3dss_A 247 --S-------------------------------VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDP------ 287 (331)
T ss_dssp --C-------------------------------HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT------
T ss_pred --c-------------------------------hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcc------
Confidence 0 0045789999999999999 99999999999988888655
Q ss_pred CcCCCcHHHHHhcccccccCCCCCccccchhhhHHhhhhc
Q 005381 473 NKISHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVT 512 (699)
Q Consensus 473 ~~~~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~ 512 (699)
.+...++...+.+|+.|||.|.++|.|+.+.+.+++..
T Consensus 288 --~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~~~~~~ 325 (331)
T 3dss_A 288 --LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSV 325 (331)
T ss_dssp --TTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999988844
No 3
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=100.00 E-value=4.3e-45 Score=391.15 Aligned_cols=230 Identities=24% Similarity=0.364 Sum_probs=208.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHH
Q 005381 10 KPEDAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDE 89 (699)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~e 89 (699)
+++.+..++++.++|+++++++++.+.+++++++||++|+++|.+||++||+||+||+++..++. .+++
T Consensus 39 ~~~~~~~~i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~-----------~l~e 107 (349)
T 3q7a_A 39 DGPNPVVPIMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNK-----------SLED 107 (349)
T ss_dssp CCSSCSSCBCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-----------CHHH
T ss_pred CCCCCeeeeeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhh-----------hHHH
Confidence 44567789999999999999999999999999999999999999999999999999999999852 4899
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCCh-------HHHH
Q 005381 90 ELRVVESALRQNFKSYGAWHHRKWILSKGHS-SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSE-------EDEL 161 (699)
Q Consensus 90 EL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~-~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~-------e~EL 161 (699)
||++++.+|..|||+|++|+||+|++.++.+ .+++|+++|++++++||||||||+||+|++.+++.+. ++|+
T Consensus 108 EL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 108 ELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 9999999999999999999999999998734 7899999999999999999999999999999999885 4899
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCCCCCCc
Q 005381 162 KYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRVDSPQ 241 (699)
Q Consensus 162 ~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~~~~~~ 241 (699)
++++++|+.||+|+|||+||++++.++++. ....+++++|++++++||+++|+|+|+|+|+|||+.+..+...|+
T Consensus 188 e~~~k~I~~dp~N~SAW~~R~~lL~~l~~~-----~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 188 DWCNEMLRVDGRNNSAWGWRWYLRVSRPGA-----ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHTTSTTC-----CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccc
Confidence 999999999999999999999999988541 123467899999999999999999999999999999988888899
Q ss_pred ccccCCCCCCccee
Q 005381 242 LVSSWPTPGSDLIL 255 (699)
Q Consensus 242 ~~~~~~~~~~~~~~ 255 (699)
+.++||++++.|.+
T Consensus 263 ~~~~~~~~~~~~~~ 276 (349)
T 3q7a_A 263 LPAILPYTASKLNP 276 (349)
T ss_dssp HHHHGGGTC-----
T ss_pred cccccccccccccc
Confidence 99999999988644
No 4
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=4.7e-43 Score=371.24 Aligned_cols=211 Identities=23% Similarity=0.407 Sum_probs=193.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHH
Q 005381 10 KPEDAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDE 89 (699)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~e 89 (699)
+++.+..+++|.++|++++++|++.++.+++|++||++|+++|.+||++|||||+||.+|.+++. ..+++
T Consensus 18 ~~~~~~~~i~y~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~----------~~~~e 87 (306)
T 3dra_A 18 TEEPQICQILYDEDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPN----------RNLYD 87 (306)
T ss_dssp CSSCCTTCCCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT----------SCHHH
T ss_pred CCCCCceeeeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc----------ccHHH
Confidence 45567789999999999999999999999999999999999999999999999999999999861 24999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHH----HhCC--CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCCh-HHHHH
Q 005381 90 ELRVVESALRQNFKSYGAWHHRKWIL----SKGH--SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSE-EDELK 162 (699)
Q Consensus 90 EL~~~~~~L~~nPKsy~aW~hR~w~L----~~~~--~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~-e~EL~ 162 (699)
||++++.+|..|||+|++|+||+|++ ..+. ..+++|+++|++++++||||||||+||+|++.+++.+. ++|++
T Consensus 88 eL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~ 167 (306)
T 3dra_A 88 ELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELS 167 (306)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHH
Confidence 99999999999999999999999999 5552 57899999999999999999999999999999999883 38999
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCC
Q 005381 163 YTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (699)
Q Consensus 163 ~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~ 236 (699)
+++++|+.||+||||||||++++..+++. ...+++++|++++++||+++|+|+|+|+|++|++....+
T Consensus 168 ~~~~~i~~d~~N~sAW~~R~~ll~~l~~~------~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 168 FVDKVIDTDLKNNSAWSHRFFLLFSKKHL------ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHSSGGG------CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcccc------chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence 99999999999999999999999988542 124568999999999999999999999999999988653
No 5
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=100.00 E-value=1.6e-37 Score=356.31 Aligned_cols=423 Identities=18% Similarity=0.269 Sum_probs=261.6
Q ss_pred cHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 005381 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHS 120 (699)
Q Consensus 41 ~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~ 120 (699)
-+++|++++++|..+|++|.||+||++++..++. ..+++|+++++++|+.+|+||+||+||+|++.++..
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~----------~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~ 158 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE----------PNWARELELCARFLEADERNFHCWDYRRFVAAQAAV 158 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS----------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc----------ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC
Confidence 3899999999999999999999999999999863 238999999999999999999999999999999854
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCC-------------hHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 005381 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS-------------EEDELKYTEDMICNNFSNYSAWHNRSLLLSN 187 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~-------------~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~ 187 (699)
.+++|+++++++++.||+|+.||+||++++..+... .++|+++++++|+.+|.|.|||+|+++++..
T Consensus 159 ~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 159 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 899999999999999999999999999999987322 1789999999999999999999999999987
Q ss_pred hhhhhcc-Cc-cchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCCCCCCcccccCCCCCCcceecCCccccCCC
Q 005381 188 LLKRKVE-GF-VSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRVDSPQLVSSWPTPGSDLILLGDRCLDGCA 265 (699)
Q Consensus 188 l~~~~~~-~~-~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (699)
.++.... .+ ..... ..++.+|++|+..+|.....-+|-. ..+ ....|.+..
T Consensus 239 ~~~~~~~~~~~~~~~~--~~~~~~f~~~i~~~~~~~~~~~~~~---------~~~-~~~~W~~~~--------------- 291 (567)
T 1dce_A 239 AEPHDVLCCVHVSREE--ACLSVCFSRPLTVGSRMGTLLLMVD---------EAP-LSVEWRTPD--------------- 291 (567)
T ss_dssp CCCCSCEEEEEEETTT--TEEEEEEEEEECTTBTTBCEEEEES---------SSE-ECCCCBCTT---------------
T ss_pred CCCccceeeeeeccCC--ceEEEEeccceeccccccceEEeec---------Ccc-cceeeccCC---------------
Confidence 7541100 00 00000 0022334555555554431111100 001 123342111
Q ss_pred CCCCccccCCCCccceEEeeccccccccc-c---ceEEecccCC--CccceeeeCCCCCCccceeEEEeccCCCCCCCCC
Q 005381 266 SSPFTRFHLDSRTFPLVLYFNQAVEGVNS-S---TITVDSELNT--NKDLVWKPLSSCNSKAAQVWVTQLNLPDGNTHSS 339 (699)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~--~~~~~w~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 339 (699)
.+...-++|+ ++.+...+.. . +|.+...... ..-+.|. +....|..++.... ...
T Consensus 292 --------~~~~~~~vw~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~-~L~-- 352 (567)
T 1dce_A 292 --------GRNRPSHVWL-CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLK-------DRPECWCRDSATDE-QLF-- 352 (567)
T ss_dssp --------SSCCSEEEEE-EECCGGGTSTTSSEEEEEEEETTTTEEEEEEEET-------TCSEEEEECCSTTT-TSS--
T ss_pred --------cccccceeEE-eecCccccccccccceEEEeeccCCCCccccccC-------CCchhhhcccccCc-cce--
Confidence 0111112332 3333222110 0 1111111100 0000111 12234443332200 000
Q ss_pred CccceEEecCcccccccCCCCccCCCccceEEEEEeecccccccccccceeeccCCCccccccccCCCCCcccccccccc
Q 005381 340 KVFPVEVSLGHSQGIISSSGFHYSNPFCFAFRVSLQFVETQPVEALGKEIISWRDESFHNYNAHSQDSSPISSLYQLSIK 419 (699)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lsi~ 419 (699)
.+.+.... . . ....+++.+..|..|.+
T Consensus 353 -------------------------------~L~Ls~n~-----------L-------~---~Lp~~i~~l~~L~~L~l- 379 (567)
T 1dce_A 353 -------------------------------RCELSVEK-----------S-------T---VLQSELESCKELQELEP- 379 (567)
T ss_dssp -------------------------------SCCCCHHH-----------H-------H---HHHHHHHHHHHHHHHCT-
T ss_pred -------------------------------eccCChhh-----------H-------H---hhHHHHHHHHHHHHhcc-
Confidence 00000000 0 0 00112233444444433
Q ss_pred ccCccchhhhhHH-------------HHHHHHHHHHhhhh---ccccccccccHHHHHhhcccCCCCCCCcCCCcHHHHH
Q 005381 420 NDNELTDFEWRAA-------------TIAKEIDHFRELLS---LINCKIGKLTLARLLMAHDAMMCPPANKISHSEEVLE 483 (699)
Q Consensus 420 ~~~~~~~~~~~~~-------------~L~~el~~~~~L~~---~p~nk~~~Ltl~~ll~~~~~l~~~~~~~~~~~~~~l~ 483 (699)
+++|.+. .+|..+..+.+|.. ...+.+..+.. +....+. +.. +
T Consensus 380 ------~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~--l~l~~n~-----------i~~-l- 438 (567)
T 1dce_A 380 ------ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS--KFLLENS-----------VLK-M- 438 (567)
T ss_dssp ------TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH--HHHHHHH-----------HHH-H-
T ss_pred ------ccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh--hhhhccc-----------ccc-c-
Confidence 3555333 34445555555543 11122211111 1111001 000 1
Q ss_pred hcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCccc-CCCCCcccCEEEc
Q 005381 484 LYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLG-SFDKLLWVQMLDL 562 (699)
Q Consensus 484 ~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~-~l~~L~~L~~LdL 562 (699)
....|+.||+++|.+. .++. +..+.+++. |+|++|.|+.+| .+..+++|+.|+|
T Consensus 439 ~~~~L~~L~Ls~n~l~-----------------~lp~-~~~l~~L~~-------L~Ls~N~l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 439 EYADVRVLHLAHKDLT-----------------VLCH-LEQLLLVTH-------LDLSHNRLRALPPALAALRCLEVLQA 493 (567)
T ss_dssp HHTTCSEEECTTSCCS-----------------SCCC-GGGGTTCCE-------EECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred CccCceEEEecCCCCC-----------------CCcC-ccccccCcE-------eecCcccccccchhhhcCCCCCEEEC
Confidence 1125888999998721 1121 333444444 999999999997 8999999999999
Q ss_pred cCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCCC
Q 005381 563 SHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHS 618 (699)
Q Consensus 563 S~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp 618 (699)
++|.|+.+|.+..+++|+.|+|++|+|+++..|..++.+++|+.|+|++|+|+.+|
T Consensus 494 s~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 494 SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 99999999889999999999999999998743688999999999999999999886
No 6
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.97 E-value=6.7e-30 Score=270.40 Aligned_cols=187 Identities=22% Similarity=0.356 Sum_probs=157.5
Q ss_pred CcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC
Q 005381 40 YSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH 119 (699)
Q Consensus 40 ~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~ 119 (699)
.-+++|++++++|.+||++|++|+|||+++.++...... ...+++||.+++++|..+||||+||+||+|++.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~-----~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l- 157 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN-----DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTF- 157 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT-----CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-
Confidence 448999999999999999999999999999554321000 12479999999999999999999999999999988
Q ss_pred CChH--HHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCC-----hHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhh
Q 005381 120 SSID--NELRLLDKFQKADSRNFHAWNYRRFVAASMNRS-----EEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (699)
Q Consensus 120 ~~~~--~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~-----~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~ 192 (699)
+.++ +|+++|+++++.||+|||||+||+|++..++.. .++|+++++++|+.+|+|+|||+||++++..+++..
T Consensus 158 ~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~ 237 (306)
T 3dra_A 158 DLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSI 237 (306)
T ss_dssp TCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCG
T ss_pred cccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCCh
Confidence 4777 999999999999999999999999999999861 378999999999999999999999999999876521
Q ss_pred cc------Ccc--------------------chhchHHHHHHHHHHHHH-hCCCCchhHHHHHHHHc
Q 005381 193 VE------GFV--------------------SKEKVLPDEYEFVHQAIF-TDPDDQSGWFYHLWLLD 232 (699)
Q Consensus 193 ~~------~~~--------------------~~~~~~~eeL~~~~~ai~-~dP~d~SaW~Y~~~Ll~ 232 (699)
.. .+. ...+.+++++++++.++. .||-+...|.|+.-.|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l~ 304 (306)
T 3dra_A 238 TQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKLT 304 (306)
T ss_dssp GGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhcc
Confidence 10 000 012345789999999997 79999999999887654
No 7
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.96 E-value=1.5e-28 Score=261.79 Aligned_cols=176 Identities=20% Similarity=0.367 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~ 121 (699)
+++|.+++.+|..||++|++|+||++++..++. ..+++||.+++++|..+|+||+||+||+|++......
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~----------~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~ 160 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE----------PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA 160 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS----------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc----------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC
Confidence 689999999999999999999999999998863 2489999999999999999999999999999988533
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcC--------------CChHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 005381 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMN--------------RSEEDELKYTEDMICNNFSNYSAWHNRSLLLSN 187 (699)
Q Consensus 122 ~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~--------------~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~ 187 (699)
+++|+++++++++.||+|++||+||++++..+. .+ ++|+++++++|..+|.|.|||+|+++++..
T Consensus 161 ~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~-~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 161 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL-LKELELVQNAFFTDPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 799999999999999999999999999999983 23 689999999999999999999999999887
Q ss_pred hhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005381 188 LLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 188 l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll 231 (699)
.......+ ..+.+++++|++++++++..+|++ .|.+...++
T Consensus 240 ~~~~~~~~-~~~~~~l~~el~~~~elle~~pd~--~w~l~~~~~ 280 (331)
T 3dss_A 240 GSGRCELS-VEKSTVLQSELESCKELQELEPEN--KWCLLTIIL 280 (331)
T ss_dssp SSCGGGCC-HHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred ccCccccc-hHHHHHHHHHHHHHHHHHhhCccc--chHHHHHHH
Confidence 63211111 345578999999999999999987 899887755
No 8
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.94 E-value=1.1e-26 Score=248.59 Aligned_cols=167 Identities=19% Similarity=0.359 Sum_probs=150.2
Q ss_pred HHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 52 LETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDK 131 (699)
Q Consensus 52 L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k 131 (699)
|...|++..+|.+++.++..... -+++|++++.+|..||++|++|++|+++|..+...+++||+++++
T Consensus 47 i~y~~~y~~~~~~~r~~~~~~e~------------se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~ 114 (349)
T 3q7a_A 47 IMYSEEYKDAMDYFRAIAAKEEK------------SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNE 114 (349)
T ss_dssp BCCCHHHHHHHHHHHHHHHTTCC------------SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred eeeCHHHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 45678889999999999988754 468999999999999999999999999999885469999999999
Q ss_pred HHHhCCCChhhhhHHHHHHHhc-C-CChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHH
Q 005381 132 FQKADSRNFHAWNYRRFVAASM-N-RSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEF 209 (699)
Q Consensus 132 ~L~~dprN~haW~yR~~vl~~l-~-~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~ 209 (699)
+|..+|+||++|+||+|++..+ + .+ ++|+++++++++.||+||+||+||++++..++.... ...+++.+|+++
T Consensus 115 ~L~~nPKny~aW~hR~wlL~~l~~~~~-~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~----~~~~~~~eELe~ 189 (349)
T 3q7a_A 115 FAVQNLKSYQVWHHRLLLLDRISPQDP-VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGR----ISEAQWGSELDW 189 (349)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHCCSCC-HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccc----cchhhHHHHHHH
Confidence 9999999999999999999998 7 55 799999999999999999999999999999976321 123567899999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHcCcC
Q 005381 210 VHQAIFTDPDDQSGWFYHLWLLDQTV 235 (699)
Q Consensus 210 ~~~ai~~dP~d~SaW~Y~~~Ll~~~~ 235 (699)
++++|..||.|.|||+|++|++....
T Consensus 190 ~~k~I~~dp~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 190 CNEMLRVDGRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999998754
No 9
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=3.5e-24 Score=234.03 Aligned_cols=193 Identities=25% Similarity=0.488 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCC
Q 005381 23 KLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF 102 (699)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nP 102 (699)
.+......+...+...+..++|+++++++|.++|+++++|++|+.++..+++ .+++++.+++++|..+|
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~-----------d~~eAl~~~~~al~l~P 163 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK-----------DLHEEMNYITAIIEEQP 163 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHccc-----------CHHHHHHHHHHHHHHCC
Confidence 3444444444444444555999999999999999999999999999998852 38999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHH
Q 005381 103 KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRS 182 (699)
Q Consensus 103 Ksy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~ 182 (699)
+++.+|+||++++... +.+++|+++|++++++||+|++||.+|++++..+|.+ ++++++++++|+.+|+|.+||++|+
T Consensus 164 ~~~~a~~~~g~~~~~~-g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~-~eAl~~~~~al~l~P~~~~a~~~lg 241 (382)
T 2h6f_A 164 KNYQVWHHRRVLVEWL-RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW-DNELQYVDQLLKEDVRNNSVWNQRY 241 (382)
T ss_dssp TCHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC-TTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999988 6999999999999999999999999999999999999 6899999999999999999999999
Q ss_pred HHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCc
Q 005381 183 LLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (699)
Q Consensus 183 ~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~ 234 (699)
.++..+... ..+.++++|++++++||.++|++.++|+|+++++...
T Consensus 242 ~~l~~l~~~------~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~ 287 (382)
T 2h6f_A 242 FVISNTTGY------NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR 287 (382)
T ss_dssp HHHHHTTCS------CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT
T ss_pred HHHHHhcCc------chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHcc
Confidence 999885331 1234467889999999999999999999999999763
No 10
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.80 E-value=8.7e-19 Score=191.26 Aligned_cols=176 Identities=25% Similarity=0.391 Sum_probs=154.6
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w 113 (699)
....|.-.++|+..++++|.++|+++.+|++|+.++..+++ +++|+.+++++|..+|+++.+|++|+|
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~------------~~eAl~~~~kal~ldP~~~~a~~~lg~ 208 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD------------PSQELEFIADILNQDAKNYHAWQHRQW 208 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------------CTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCccCHHHHHHHHH
Confidence 34456523899999999999999999999999999999876 789999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhc-CCChHH----HHHHHHHHHHhccCchHHHHHHHHHHHHh
Q 005381 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM-NRSEED----ELKYTEDMICNNFSNYSAWHNRSLLLSNL 188 (699)
Q Consensus 114 ~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l-~~~~e~----EL~~~~~~I~~n~sN~SAW~~R~~ll~~l 188 (699)
++... +.+++|+++++++++++|+|..||++|++++..+ +...+. |+++++++|+.+|.|.++|++++.++...
T Consensus 209 ~~~~~-g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~ 287 (382)
T 2h6f_A 209 VIQEF-KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR 287 (382)
T ss_dssp HHHHH-TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT
T ss_pred HHHHc-CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHcc
Confidence 99988 5899999999999999999999999999999995 443332 37999999999999999999999998875
Q ss_pred hhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 189 LKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 189 ~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
+. ..++++++.+.++ ..+|++..++..+.+++..
T Consensus 288 g~----------~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 288 GL----------SKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYED 321 (382)
T ss_dssp CG----------GGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHH
T ss_pred Cc----------cchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 32 1257888998887 9999999999888887755
No 11
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=2.4e-14 Score=142.73 Aligned_cols=184 Identities=11% Similarity=0.031 Sum_probs=162.5
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHH
Q 005381 30 QFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWH 109 (699)
Q Consensus 30 ~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~ 109 (699)
........|.+ ++|+..+.++|..+|++..+|..++.++...++ +++++..+++++..+|++..+|.
T Consensus 11 lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~------------~~~A~~~~~~al~~~P~~~~a~~ 77 (217)
T 2pl2_A 11 LGVQLYALGRY-DAALTLFERALKENPQDPEALYWLARTQLKLGL------------VNPALENGKTLVARTPRYLGGYM 77 (217)
T ss_dssp HHHHHHHTTCH-HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCcHHHHH
Confidence 33445567777 899999999999999999999999999998875 89999999999999999999999
Q ss_pred HHHHHHHhCC----------CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHH
Q 005381 110 HRKWILSKGH----------SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWH 179 (699)
Q Consensus 110 hR~w~L~~~~----------~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~ 179 (699)
.++.++.... +.+++++..++++++++|.+..+|..++.++...|.+ ++.+++++++++.+ .+..+|.
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGER-DKAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHC-CCHHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcc-cchHHHH
Confidence 9999998650 3789999999999999999999999999999999998 68999999999999 9999999
Q ss_pred HHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCCCCCC
Q 005381 180 NRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRVDSP 240 (699)
Q Consensus 180 ~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~~~~~ 240 (699)
.++.++..+++ ++++++.+.+++..+|++..+|+.+..++....+.+.+
T Consensus 156 ~la~~~~~~g~------------~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 156 ALAELYLSMGR------------LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp HHHHHHHHHTC------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHcCC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence 99999988865 79999999999999999999999999998776655544
No 12
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=2.9e-14 Score=136.82 Aligned_cols=164 Identities=10% Similarity=0.012 Sum_probs=152.2
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 005381 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (699)
Q Consensus 31 ~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~h 110 (699)
....+..|++ ++|++.+.++|+++|++..+|..++.++...+. +++++..+..++..+|++..+|..
T Consensus 12 G~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~ 78 (184)
T 3vtx_A 12 GDKKRTKGDF-DGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL------------PNDAIESLKKFVVLDTTSAEAYYI 78 (184)
T ss_dssp HHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhcCchhHHHHHH
Confidence 3445567888 899999999999999999999999999998865 899999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhh
Q 005381 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (699)
Q Consensus 111 R~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~ 190 (699)
.+.+.... ..++.+++.+.++++++|.+..+|..++.+...+|.+ ++++++++++++.+|.+..+|++++.++..+++
T Consensus 79 ~~~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMI-DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEH-DKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCc-hhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC
Confidence 99999877 5899999999999999999999999999999999998 789999999999999999999999999988755
Q ss_pred hhccCccchhchHHHHHHHHHHHHHhCCCCc
Q 005381 191 RKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (699)
Q Consensus 191 ~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~ 221 (699)
++++++++++|+..+|++.
T Consensus 157 ------------~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 157 ------------RDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp ------------HHHHHHHHHHHHHTTHHHH
T ss_pred ------------HHHHHHHHHHHHhCCccCH
Confidence 8999999999999999863
No 13
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.51 E-value=1.6e-12 Score=129.14 Aligned_cols=190 Identities=9% Similarity=-0.019 Sum_probs=163.0
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChH
Q 005381 28 QSQFLHNHHNHIYSKEAVELSTKLLETNP-ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG 106 (699)
Q Consensus 28 ~~~~~~~~~~~~~~~eaL~~~~~~L~~nP-~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~ 106 (699)
..........|.+ ++|+..+.+++.++| .+..+|..++.+...+++ +++++..+++++..+|++..
T Consensus 11 ~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~al~~~p~~~~ 77 (228)
T 4i17_A 11 KNEGNDALNAKNY-AVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK------------YKEAADYFDIAIKKNYNLAN 77 (228)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHTTCSHHH
T ss_pred HHHHHHHHHccCH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc------------HHHHHHHHHHHHHhCcchHH
Confidence 3444455667888 899999999999999 999999999999998865 99999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh-------hhhhHHHHHHHhcCCChHHHHHHHHHHHHhccC--chHH
Q 005381 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF-------HAWNYRRFVAASMNRSEEDELKYTEDMICNNFS--NYSA 177 (699)
Q Consensus 107 aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~-------haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~s--N~SA 177 (699)
+|..++.++... +.++++++.++++++++|.|. .+|..++.+....+.+ +++++++.++++.+|. +..+
T Consensus 78 ~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 78 AYIGKSAAYRDM-KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI-EKAEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH-HHHHHHHHHHHhcCCCcccHHH
Confidence 999999999988 699999999999999999999 6799999999999998 7899999999999999 8899
Q ss_pred HHHHHHHHHHhhhhh--c-------------cCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHc
Q 005381 178 WHNRSLLLSNLLKRK--V-------------EGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (699)
Q Consensus 178 W~~R~~ll~~l~~~~--~-------------~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~ 232 (699)
|..++.+....+... . .......+.++++++++.+|+..+|++..+...+..+..
T Consensus 156 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 156 LYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 999999988776530 0 000112344689999999999999999999887766553
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.48 E-value=1.1e-13 Score=143.98 Aligned_cols=141 Identities=20% Similarity=0.231 Sum_probs=74.0
Q ss_pred EEccCCC-CCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccc
Q 005381 538 LQLKNLS-LSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYN 612 (699)
Q Consensus 538 L~Ls~n~-l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N 612 (699)
|++++|. ++.++ .+..+++|++|++++|.++.+++ +..+++|+.|++++|.++.++ +..+..+++|+.|+|++|
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-DDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC-HhHhccCCCccEEECCCC
Confidence 6666665 55542 55666666666666666655543 666666666666666666552 234556666666666666
Q ss_pred cCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCccc
Q 005381 613 EIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLK 691 (699)
Q Consensus 613 ~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~ 691 (699)
.|+.++.. .+..++.+..+++++|.+.... |..|..+ +|+.|+|++|.|. ......+..+++|+
T Consensus 164 ~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 164 RISSVPER---AFRGLHSLDRLLLHQNRVAHVH----------PHAFRDLGRLMTLYLFANNLS--ALPTEALAPLRALQ 228 (285)
T ss_dssp CCCEECTT---TTTTCTTCCEEECCSSCCCEEC----------TTTTTTCTTCCEEECCSSCCS--CCCHHHHTTCTTCC
T ss_pred cccccCHH---HhcCccccCEEECCCCcccccC----------HhHccCcccccEeeCCCCcCC--cCCHHHcccCcccC
Confidence 66655421 1222233333445555443321 3345555 5666666666552 11122334455555
Q ss_pred ccc
Q 005381 692 WLD 694 (699)
Q Consensus 692 ~LD 694 (699)
.||
T Consensus 229 ~L~ 231 (285)
T 1ozn_A 229 YLR 231 (285)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 15
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=6e-14 Score=147.02 Aligned_cols=173 Identities=21% Similarity=0.222 Sum_probs=130.1
Q ss_pred HHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCCcccCEEE
Q 005381 482 LELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKLLWVQMLD 561 (699)
Q Consensus 482 l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L~~L~~Ld 561 (699)
++.+++|++||+++|.+. .+.. +..+.+++. |++++|.++.++.+..+++|+.|+
T Consensus 64 ~~~l~~L~~L~L~~n~l~-----------------~~~~-l~~l~~L~~-------L~l~~n~l~~~~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLT-----------------DIKP-LANLKNLGW-------LFLDENKVKDLSSLKDLKKLKSLS 118 (291)
T ss_dssp GGGCTTCCEEECCSSCCC-----------------CCGG-GTTCTTCCE-------EECCSSCCCCGGGGTTCTTCCEEE
T ss_pred HhcCCCCCEEEccCCccC-----------------CCcc-cccCCCCCE-------EECCCCcCCCChhhccCCCCCEEE
Confidence 677888999999888721 1111 223333333 999999999998999999999999
Q ss_pred ccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccccCCCCcc
Q 005381 562 LSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHG 641 (699)
Q Consensus 562 LS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l 641 (699)
|++|.++.++.+..+++|+.|++++|.|+++ ..+..+++|+.|+|++|+|+.++. +..++-+..+++++|.+
T Consensus 119 L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 119 LEHNGISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCC
T ss_pred CCCCcCCCChhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh-----hcCCCccCEEECCCCcC
Confidence 9999999987799999999999999999887 668889999999999999998752 45555555567788877
Q ss_pred ceeecCCcchhhhhhccCCCC-CccEEEecCCCC-CCccchHHHhhcCCccccccCccCC
Q 005381 642 QTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI-VNEKFKSFLIKVLPGLKWLDGEQLH 699 (699)
Q Consensus 642 ~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~~~~~~~~~~~l~~L~~LD~~~i~ 699 (699)
..+ ..+..+ +|+.|+|++|++ ..+......+..++.++.+||.+++
T Consensus 191 ~~l------------~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~~~~l~~l~~~~i~ 238 (291)
T 1h6t_A 191 SDL------------RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238 (291)
T ss_dssp CBC------------GGGTTCTTCSEEEEEEEEEECCCEECCSEEEEECCCBCTTSCBCC
T ss_pred CCC------------hhhccCCCCCEEECcCCcccCCccccccccEEcceEECCCCCCcC
Confidence 432 247888 999999999998 3222211122335677888887663
No 16
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.47 E-value=5.3e-14 Score=145.60 Aligned_cols=171 Identities=22% Similarity=0.233 Sum_probs=107.1
Q ss_pred HHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhh-hhccCCCCCCCCCCCCeEEccCCCCCccc--CCCCCcc
Q 005381 480 EVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLS-RCFHYSNSPSNRGSPMCLQLKNLSLSRLG--SFDKLLW 556 (699)
Q Consensus 480 ~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~-~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~--~l~~L~~ 556 (699)
..+..+.+|++||+++|... .+.. .+..+.+++. |++++|.++.++ .+..+++
T Consensus 46 ~~~~~l~~L~~L~l~~n~l~-----------------~~~~~~~~~l~~L~~-------L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 46 YSFFSFPELQVLDLSRCEIQ-----------------TIEDGAYQSLSHLST-------LILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp TTTTTCTTCSEEECTTCCCC-----------------EECTTTTTTCTTCCE-------EECTTCCCCEECTTTTTTCTT
T ss_pred hHhccccCCcEEECCCCcCC-----------------ccCHHHccCCcCCCE-------EECCCCccCccChhhhcCCcc
Confidence 34567788888888887621 1111 1222233333 888888888665 6778888
Q ss_pred cCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcc-c
Q 005381 557 VQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSH-S 633 (699)
Q Consensus 557 L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~-l 633 (699)
|+.|++++|.++.++. +..+++|+.|++++|.++.+..|..+..+++|+.|+|++|+|+.++...+..+..+..+. .
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence 8888888888877766 778888888888888887754466778888888888888888877644444444443332 2
Q ss_pred ccCCCCccceeec-----------C-Ccchhhhhh-ccCCCC-CccEEEecCCCC
Q 005381 634 VGSEWNHGQTVID-----------D-DIKSYWEAY-FILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 634 l~l~~N~l~~~~~-----------~-~~~~~~~~p-~~l~~L-~L~~LdLs~N~l 674 (699)
+++++|.+..+.. + .++.+..+| ..|..+ +|+.|+|++|++
T Consensus 182 L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp EECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred eecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 3555555443221 1 112222222 235666 777777777777
No 17
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.46 E-value=7.1e-13 Score=155.73 Aligned_cols=161 Identities=16% Similarity=0.059 Sum_probs=143.9
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 005381 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (699)
Q Consensus 31 ~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~h 110 (699)
....+..|.+ ++|++++.++|+++|++..+|+..+.++..+++ +++++..++++|+.+|++..+|+.
T Consensus 16 G~~~~~~G~~-~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~------------~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 16 ANIKREQGNI-EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK------------LQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3444567777 899999999999999999999999999999876 999999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhh
Q 005381 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (699)
Q Consensus 111 R~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~ 190 (699)
++.++... +++++++++++++++++|.+..+|..++.++...|.+ ++++++++++++.+|.+..+|.+++.++..+++
T Consensus 83 Lg~~l~~~-g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~-~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEM-QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI-PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999988 6999999999999999999999999999999999998 789999999999999999999999999988855
Q ss_pred hhccCccchhchHHHHHHHHHHHHHhCC
Q 005381 191 RKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (699)
Q Consensus 191 ~~~~~~~~~~~~~~eeL~~~~~ai~~dP 218 (699)
++++++.+.+++.+.|
T Consensus 161 ------------~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 ------------WTDYDERMKKLVSIVA 176 (723)
T ss_dssp ------------CTTHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHhCh
Confidence 3455555555554443
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.45 E-value=2.3e-13 Score=140.80 Aligned_cols=123 Identities=26% Similarity=0.280 Sum_probs=92.4
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
|++++|.++.++ .+..+++|++|+|++|.++.+++ |..+++|+.|++++|.|++++ +..+..+++|+.|++++|+
T Consensus 90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC-HHHhccCccCCEEECCCCC
Confidence 888888888776 47888888899998888887776 788888888899888888763 3456788888889998888
Q ss_pred CCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 614 IGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 614 I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
|+.++... +..++-+..+++++|.+..+. +..+..+ +|+.|+|++|++
T Consensus 169 l~~~~~~~---~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 169 LQSLPEGV---FDKLTQLKDLRLYQNQLKSVP----------DGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CCCCCTTT---TTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCB
T ss_pred cCccCHHH---hcCCccCCEEECCCCcCCccC----------HHHHhCCcCCCEEEccCCCc
Confidence 88875322 333344444566777664322 3457778 899999999988
No 19
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=1.7e-13 Score=138.40 Aligned_cols=147 Identities=19% Similarity=0.222 Sum_probs=112.4
Q ss_pred eEEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccc
Q 005381 537 CLQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYN 612 (699)
Q Consensus 537 ~L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N 612 (699)
.|+|++|.++.+. .|..+++|+.|+|++|.|+.++. |..+++|+.|+|++|+|+.++ +..+..+++|+.|+|++|
T Consensus 44 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP-SAVFDRLVHLKELFMCCN 122 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC-hhHhCcchhhCeEeccCC
Confidence 3999999999774 68889999999999999988886 789999999999999998873 355788999999999999
Q ss_pred cCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCC-----CccchHHHhhc
Q 005381 613 EIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIV-----NEKFKSFLIKV 686 (699)
Q Consensus 613 ~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~-----~~~~~~~~~~~ 686 (699)
+|+.+|. .+..++-+..+++++|.+..+. +..|..+ +|+.|+|++|++. ...+..++...
T Consensus 123 ~l~~lp~----~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~ 188 (229)
T 3e6j_A 123 KLTELPR----GIERLTHLTHLALDQNQLKSIP----------HGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADH 188 (229)
T ss_dssp CCCSCCT----TGGGCTTCSEEECCSSCCCCCC----------TTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHC
T ss_pred cccccCc----ccccCCCCCEEECCCCcCCccC----------HHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhC
Confidence 9998863 2233444455577777775432 2467888 9999999999992 12244556666
Q ss_pred CCccccccCccC
Q 005381 687 LPGLKWLDGEQL 698 (699)
Q Consensus 687 l~~L~~LD~~~i 698 (699)
.+.+..+||.+|
T Consensus 189 ~~~~~~~~g~~v 200 (229)
T 3e6j_A 189 TSIAMRWDGKAV 200 (229)
T ss_dssp GGGEEEESSSEE
T ss_pred ccccccccCccc
Confidence 677778888654
No 20
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.45 E-value=5.6e-13 Score=155.99 Aligned_cols=171 Identities=8% Similarity=-0.136 Sum_probs=158.3
Q ss_pred hcCCCCcHHHHHHHHHHH--------HhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChH
Q 005381 35 HHNHIYSKEAVELSTKLL--------ETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG 106 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L--------~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~ 106 (699)
...+++ ++|++.+++++ ..+|++..+|..++.++...++ +++++..++++++.+|++..
T Consensus 402 ~~~~~~-~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~------------~~~A~~~~~~al~~~p~~~~ 468 (681)
T 2pzi_A 402 TVLSQP-VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGD------------VAKATRKLDDLAERVGWRWR 468 (681)
T ss_dssp TTTCCH-HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHCCCHH
T ss_pred ccccCH-HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCC------------HHHHHHHHHHHhccCcchHH
Confidence 556666 89999999999 9999999999999999998875 99999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 005381 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (699)
Q Consensus 107 aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~ 186 (699)
+|++++.++... +.++++++.++++++++|.+..+|..++.++..+|.+. + +++++++++.+|.+..+|++++.++.
T Consensus 469 a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~-~-~~~~~~al~~~P~~~~a~~~lg~~~~ 545 (681)
T 2pzi_A 469 LVWYRAVAELLT-GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTD-E-HKFYQTVWSTNDGVISAAFGLARARS 545 (681)
T ss_dssp HHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCC-T-TCHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChH-H-HHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 999999999987 69999999999999999999999999999999999994 5 99999999999999999999999998
Q ss_pred HhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 187 NLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
.+++ ++++++.+++|+.++|++..+|+.+..++-.
T Consensus 546 ~~g~------------~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 546 AEGD------------RVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HTTC------------HHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HcCC------------HHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 8855 8999999999999999999999988888744
No 21
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.45 E-value=2.4e-13 Score=140.43 Aligned_cols=123 Identities=23% Similarity=0.259 Sum_probs=80.9
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
|++++|.++.++ .+..+++|+.|+|++|.++.+++ |..+++|+.|+|++|.|+.++ +..+..+++|+.|+|++|.
T Consensus 90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC-HhHccCCcccceeEecCCc
Confidence 777777777665 56677777777777777766665 677777777777777777662 2446677777777777777
Q ss_pred CCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 614 IGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 614 I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
|+.++... +..++.+..+++++|.+..+. +..|..+ +|+.|+|++|++
T Consensus 169 l~~~~~~~---~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 169 LKRVPEGA---FDKLTELKTLKLDNNQLKRVP----------EGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CSCCCTTT---TTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCB
T ss_pred CcEeChhH---hccCCCcCEEECCCCcCCcCC----------HHHhccccCCCEEEecCCCe
Confidence 77765322 233333444456666554322 2356677 888888888887
No 22
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=2.9e-12 Score=143.39 Aligned_cols=175 Identities=19% Similarity=0.087 Sum_probs=159.3
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w 113 (699)
....++++++|++++.++|.++|++..+|+..+.++...++ +++++..+++++..+|+ ..+|...+.
T Consensus 112 ~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~------------~~~A~~~~~~al~~~p~-~~~~~~lg~ 178 (474)
T 4abn_A 112 LNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD------------VTSAHTCFSGALTHCKN-KVSLQNLSM 178 (474)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHTTCCC-HHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCC-HHHHHHHHH
Confidence 44567777899999999999999999999999999998865 99999999999999999 799999999
Q ss_pred HHHhCC--------CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhc--------CCChHHHHHHHHHHHHhcc---Cc
Q 005381 114 ILSKGH--------SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM--------NRSEEDELKYTEDMICNNF---SN 174 (699)
Q Consensus 114 ~L~~~~--------~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l--------~~~~e~EL~~~~~~I~~n~---sN 174 (699)
++.... +.++++++.++++++++|.+..+|...+.++... +.+ +++++++.++++.+| .+
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS-QQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH-HHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH-HHHHHHHHHHHHhCCCcccC
Confidence 998640 3789999999999999999999999999999888 777 789999999999999 99
Q ss_pred hHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCc
Q 005381 175 YSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (699)
Q Consensus 175 ~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~ 234 (699)
..+|.+++.++..+++ ++++++.+.+|+..+|++..+|..+..++...
T Consensus 258 ~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 258 PDLHLNRATLHKYEES------------YGEALEGFSQAAALDPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp HHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999988755 89999999999999999999999988877543
No 23
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.44 E-value=5.7e-14 Score=149.77 Aligned_cols=147 Identities=20% Similarity=0.180 Sum_probs=69.8
Q ss_pred EEccCCCCCccc-CCCCCcccCEEEccCCCC-CCCcC-Ccc---------ccccceeecccCCCCCCCCCcccccccccc
Q 005381 538 LQLKNLSLSRLG-SFDKLLWVQMLDLSHNEL-RSIEG-LEA---------LQLLSCLNLSNNILGSFTALEPIRQLKSLR 605 (699)
Q Consensus 538 L~Ls~n~l~~l~-~l~~L~~L~~LdLS~N~L-~~l~~-l~~---------L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~ 605 (699)
|+|++|.++.++ .+..+++|++|+|++|.+ +.+|. +.. +++|+.|+|++|.|+.+ |..+..+++|+
T Consensus 132 L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~ 209 (328)
T 4fcg_A 132 LTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIANLQNLK 209 (328)
T ss_dssp EEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC--CGGGGGCTTCC
T ss_pred EECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc--hHhhcCCCCCC
Confidence 555555555444 455555555555555332 44443 322 55555555555555533 34455555555
Q ss_pred ccccccccCCCCCcccccccCCCCCcccccCCCCccce--------------eecCCcchhhhhhccCCCC-CccEEEec
Q 005381 606 ALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQT--------------VIDDDIKSYWEAYFILKGL-NLTQFDIV 670 (699)
Q Consensus 606 ~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~--------------~~~~~~~~~~~~p~~l~~L-~L~~LdLs 670 (699)
.|+|++|.++.+|. .+..++-+..+++++|.+.. +.+.++.....+|..+..+ +|+.|+|+
T Consensus 210 ~L~L~~N~l~~l~~----~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 210 SLKIRNSPLSALGP----AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp EEEEESSCCCCCCG----GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred EEEccCCCCCcCch----hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 55555555555432 11222222222333322211 1111222233445667777 78888888
Q ss_pred CCCC--CCccchHHHhhcCCcccccc
Q 005381 671 GNAI--VNEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 671 ~N~l--~~~~~~~~~~~~l~~L~~LD 694 (699)
+|++ ..|. .+..+++|+.++
T Consensus 286 ~n~~~~~iP~----~l~~L~~L~~l~ 307 (328)
T 4fcg_A 286 GCVNLSRLPS----LIAQLPANCIIL 307 (328)
T ss_dssp TCTTCCCCCG----GGGGSCTTCEEE
T ss_pred CCCchhhccH----HHhhccCceEEe
Confidence 8776 2221 234566666554
No 24
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=2.6e-13 Score=156.50 Aligned_cols=173 Identities=21% Similarity=0.218 Sum_probs=129.8
Q ss_pred HHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCCcccCEE
Q 005381 481 VLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKLLWVQML 560 (699)
Q Consensus 481 ~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L~~L~~L 560 (699)
.+..+++|+.||+++|.+.. ++. +..+.+|+. |+|++|.++.++.+..+++|+.|
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~-----------------~~~-l~~l~~L~~-------L~Ls~N~l~~l~~l~~l~~L~~L 114 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTD-----------------IKP-LTNLKNLGW-------LFLDENKIKDLSSLKDLKKLKSL 114 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCC-----------------CGG-GGGCTTCCE-------EECCSSCCCCCTTSTTCTTCCEE
T ss_pred HHccCCCCCEEEeeCCCCCC-----------------Chh-hccCCCCCE-------EECcCCCCCCChhhccCCCCCEE
Confidence 36788889999998887211 111 233344444 99999999999999999999999
Q ss_pred EccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccccCCCCc
Q 005381 561 DLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNH 640 (699)
Q Consensus 561 dLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~ 640 (699)
+|++|.|..++.+..|++|+.|+|++|.|+.+ ..+..|++|+.|+|++|.|+.++. +..++.+..+++++|.
T Consensus 115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp ECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSC
T ss_pred EecCCCCCCCccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh-----hccCCCCCEEECcCCC
Confidence 99999999988899999999999999999886 668899999999999999988742 4555555666888887
Q ss_pred cceeecCCcchhhhhhccCCCC-CccEEEecCCCC-CCccchHHHhhcCCccccccCccC
Q 005381 641 GQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI-VNEKFKSFLIKVLPGLKWLDGEQL 698 (699)
Q Consensus 641 l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~~~~~~~~~~~l~~L~~LD~~~i 698 (699)
+..+ ..+..+ +|+.|+|++|++ ..+......+..++.|+.+||.++
T Consensus 187 i~~l------------~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l~~l~g~~~ 234 (605)
T 1m9s_A 187 ISDL------------RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234 (605)
T ss_dssp CCBC------------GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCCBCSSSCBC
T ss_pred CCCC------------hHHccCCCCCEEEccCCcCcCCcccccccEEecccccccCCCCc
Confidence 7432 357888 999999999999 222211111223456667777654
No 25
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=1.2e-13 Score=142.56 Aligned_cols=171 Identities=20% Similarity=0.236 Sum_probs=129.4
Q ss_pred HHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCCcccCEE
Q 005381 481 VLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKLLWVQML 560 (699)
Q Consensus 481 ~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L~~L~~L 560 (699)
.+..+.+|+.|++++|.+. .+. .+..+.+++. |+|++|.++.++.+..+++|+.|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~-----------------~l~-~l~~l~~L~~-------L~L~~N~i~~~~~l~~l~~L~~L 90 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQ-----------------SLA-GMQFFTNLKE-------LHLSHNQISDLSPLKDLTKLEEL 90 (263)
T ss_dssp CHHHHTTCSEEECTTSCCC-----------------CCT-TGGGCTTCCE-------EECCSSCCCCCGGGTTCSSCCEE
T ss_pred chhhcCcCcEEECcCCCcc-----------------cch-HHhhCCCCCE-------EECCCCccCCChhhccCCCCCEE
Confidence 3678899999999998721 111 2233344444 99999999988889999999999
Q ss_pred EccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccccCCCCc
Q 005381 561 DLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNH 640 (699)
Q Consensus 561 dLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~ 640 (699)
+|++|.++.++++.. ++|+.|+|++|+|+++ +.+..+++|+.|+|++|+|+.++ .+..++-+..+++++|.
T Consensus 91 ~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~---~~l~~l~~L~~L~Ls~N~i~~~~-----~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 91 SVNRNRLKNLNGIPS-ACLSRLFLDNNELRDT---DSLIHLKNLEILSIRNNKLKSIV-----MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp ECCSSCCSCCTTCCC-SSCCEEECCSSCCSBS---GGGTTCTTCCEEECTTSCCCBCG-----GGGGCTTCCEEECTTSC
T ss_pred ECCCCccCCcCcccc-CcccEEEccCCccCCC---hhhcCcccccEEECCCCcCCCCh-----HHccCCCCCEEECCCCc
Confidence 999999999988555 9999999999999986 56889999999999999999885 23444445556778887
Q ss_pred cceeecCCcchhhhhhccCCCC-CccEEEecCCCC-CCc-cchHHHhhcCCccccccCccC
Q 005381 641 GQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI-VNE-KFKSFLIKVLPGLKWLDGEQL 698 (699)
Q Consensus 641 l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~~-~~~~~~~~~l~~L~~LD~~~i 698 (699)
+... ..+..+ +|+.|+|++|++ ..+ .+.. .+...+.++.+||..+
T Consensus 162 i~~~------------~~l~~l~~L~~L~l~~N~~~~~~~~~~~-~l~~~~~l~~l~~~~i 209 (263)
T 1xeu_A 162 ITNT------------GGLTRLKKVNWIDLTGQKCVNEPVKYQP-ELYITNTVKDPDGRWI 209 (263)
T ss_dssp CCBC------------TTSTTCCCCCEEEEEEEEEECCCEECCS-EEEEECCCBCTTSCBC
T ss_pred Ccch------------HHhccCCCCCEEeCCCCcccCCcccccc-ceEECCeeecCCCCCc
Confidence 7543 367888 999999999999 222 2211 1223467888888765
No 26
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.43 E-value=2.2e-12 Score=151.54 Aligned_cols=159 Identities=13% Similarity=0.067 Sum_probs=147.8
Q ss_pred hCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005381 54 TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQ 133 (699)
Q Consensus 54 ~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L 133 (699)
.+|++..+|+..+.++...++ +++++..++++|+.+|++..+|+.++.++.+. ++++++++.+++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~------------~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~-g~~~eA~~~~~~Al 70 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGN------------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ-GKLQEALMHYKEAI 70 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 579999999999999999876 99999999999999999999999999999988 69999999999999
Q ss_pred HhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHH
Q 005381 134 KADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQA 213 (699)
Q Consensus 134 ~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~a 213 (699)
+++|.+..+|..++.++..++.+ ++++++++++|+.+|.+..||++++.++..+++ ++++++++++|
T Consensus 71 ~l~P~~~~a~~nLg~~l~~~g~~-~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~------------~~eAi~~~~~A 137 (723)
T 4gyw_A 71 RISPTFADAYSNMGNTLKEMQDV-QGALQCYTRAIQINPAFADAHSNLASIHKDSGN------------IPEAIASYRTA 137 (723)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHH
Confidence 99999999999999999999998 789999999999999999999999999988755 89999999999
Q ss_pred HHhCCCCchhHHHHHHHHcCcCCCC
Q 005381 214 IFTDPDDQSGWFYHLWLLDQTVRVD 238 (699)
Q Consensus 214 i~~dP~d~SaW~Y~~~Ll~~~~~~~ 238 (699)
+.++|++..+|+.+..++....+.+
T Consensus 138 l~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 138 LKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999998887655443
No 27
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.43 E-value=3.7e-13 Score=137.49 Aligned_cols=123 Identities=24% Similarity=0.271 Sum_probs=94.5
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
|+|++|.++.++ .+..+++|+.|+|++|.|+.++. |..+++|+.|+|++|.|+.++ +..+..+++|+.|+|++|+
T Consensus 64 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP-SGVFDRLTKLKELRLNTNQ 142 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcC-hhHhccCCcccEEECcCCc
Confidence 888888888776 57888899999999999988776 788889999999999888773 3456788889999999999
Q ss_pred CCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 614 IGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 614 I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
|+.+|.. .+..++-+..+++++|.+..+. +..|..+ +|+.|+|++|++
T Consensus 143 l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 143 LQSIPAG---AFDKLTNLQTLSLSTNQLQSVP----------HGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCCCCTT---TTTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSCCB
T ss_pred CCccCHH---HcCcCcCCCEEECCCCcCCccC----------HHHHhCCCCCCEEEeeCCce
Confidence 8888632 2334444455577777775432 2467788 899999999998
No 28
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.43 E-value=4.6e-13 Score=138.55 Aligned_cols=172 Identities=17% Similarity=0.171 Sum_probs=125.2
Q ss_pred HHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCCcccCEEE
Q 005381 482 LELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKLLWVQMLD 561 (699)
Q Consensus 482 l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L~~L~~Ld 561 (699)
+..++.|+.|++++|... ++ ..+..+.+++. |++++|.++.++.+..+++|++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~-----------------~~l~~l~~L~~-------L~l~~n~l~~~~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SV-----------------QGIQYLPNVRY-------LALGGNKLHDISALKELTNLTYLI 91 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CC-----------------TTGGGCTTCCE-------EECTTSCCCCCGGGTTCTTCCEEE
T ss_pred cccccceeeeeeCCCCcc-cc-----------------cccccCCCCcE-------EECCCCCCCCchhhcCCCCCCEEE
Confidence 557888899999887711 11 11222344443 999999999888889999999999
Q ss_pred ccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccccCCCC
Q 005381 562 LSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWN 639 (699)
Q Consensus 562 LS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N 639 (699)
|++|.++.+++ |..+++|+.|++++|.+++++ +..+..+++|+.|+|++|.|+.++.. .+..++.+..+++++|
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP-DGVFDKLTNLTYLNLAHNQLQSLPKG---VFDKLTNLTELDLSYN 167 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSS
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccC-HHHhccCCCCCEEECCCCccCccCHH---HhccCccCCEEECCCC
Confidence 99999988877 889999999999999998873 35578899999999999999988632 2334444555577777
Q ss_pred ccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCcccccc
Q 005381 640 HGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 640 ~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~LD 694 (699)
.+..+. +..|..+ +|+.|+|++|.+. ......+..+++|+.||
T Consensus 168 ~l~~~~----------~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 168 QLQSLP----------EGVFDKLTQLKDLRLYQNQLK--SVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp CCCCCC----------TTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEE
T ss_pred CcCccC----------HHHhcCCccCCEEECCCCcCC--ccCHHHHhCCcCCCEEE
Confidence 765332 3457788 9999999999992 11122345677777765
No 29
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.42 E-value=1.3e-13 Score=145.70 Aligned_cols=117 Identities=26% Similarity=0.293 Sum_probs=62.2
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAH 617 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~l 617 (699)
|++++|.++.++.+..+++|+.|++++|.++.++++..+++|+.|++++|.++++ ..+..+++|+.|++++|.|+.+
T Consensus 112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCC
T ss_pred EECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCC---hhhcCCCCCCEEECCCCccCcC
Confidence 5555555555555555555555555555555555555555555555555555554 2255555555555555555554
Q ss_pred CcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 618 SIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 618 p~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
+. +..++.+..+++++|.+... + .+..+ +|+.|+|++|++
T Consensus 189 ~~-----l~~l~~L~~L~L~~N~l~~~-----------~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 189 SP-----LASLPNLIEVHLKNNQISDV-----------S-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp GG-----GGGCTTCCEEECTTSCCCBC-----------G-GGTTCTTCCEEEEEEEEE
T ss_pred hh-----hcCCCCCCEEEccCCccCcc-----------c-cccCCCCCCEEEccCCee
Confidence 31 22222233334444444221 1 25566 677777777776
No 30
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.42 E-value=2.5e-12 Score=127.18 Aligned_cols=176 Identities=10% Similarity=-0.013 Sum_probs=141.2
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHH----------------HHHHHHhhhccCCCCchhhhhhHHH
Q 005381 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNY----------------RKLAVQHKLTENDSDPDSLKSILDE 89 (699)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~----------------R~~~l~~l~~~~~~~~~~~~~~~~e 89 (699)
.+..........|.+ ++|+..+.+++..+|++..+|.+ ++.++...++ +++
T Consensus 6 ~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~------------~~~ 72 (208)
T 3urz_A 6 EMLQKVSAAIEAGQN-GQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN------------YDK 72 (208)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC------------HHH
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC------------HHH
Confidence 345555666778888 79999999999999999999999 9999888865 999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCCh-HHHHHHHHHHH
Q 005381 90 ELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSE-EDELKYTEDMI 168 (699)
Q Consensus 90 EL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~-e~EL~~~~~~I 168 (699)
++..++++++.+|++..+|..++.++... +.+++++++++++++++|.|..+|..++.+....+... +.....+.+.+
T Consensus 73 A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 73 AYLFYKELLQKAPNNVDCLEACAEMQVCR-GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999987 69999999999999999999999999999876554332 22344555555
Q ss_pred HhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005381 169 CNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (699)
Q Consensus 169 ~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~ 229 (699)
..+| ...+|++++.....+++ ++++++++++|+..+|+.+ +..++.-
T Consensus 152 ~~~~-~~~a~~~~g~~~~~~~~------------~~~A~~~~~~al~l~P~~~-~~~~l~~ 198 (208)
T 3urz_A 152 SPTK-MQYARYRDGLSKLFTTR------------YEKARNSLQKVILRFPSTE-AQKTLDK 198 (208)
T ss_dssp CCCH-HHHHHHHHHHHHHHHHT------------HHHHHHHHHHHTTTSCCHH-HHHHHHH
T ss_pred CCCc-hhHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 4333 33578888877666543 8999999999999999754 4444443
No 31
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.42 E-value=4.1e-13 Score=141.70 Aligned_cols=164 Identities=20% Similarity=0.251 Sum_probs=125.4
Q ss_pred HHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCCcccCEE
Q 005381 481 VLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKLLWVQML 560 (699)
Q Consensus 481 ~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L~~L~~L 560 (699)
.+..+++|++||+++|.+. .+.. +..+.+++. |++++|.++.++.+..+++|+.|
T Consensus 58 ~~~~l~~L~~L~L~~n~i~-----------------~~~~-~~~l~~L~~-------L~L~~n~l~~~~~~~~l~~L~~L 112 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQIT-----------------DLAP-LKNLTKITE-------LELSGNPLKNVSAIAGLQSIKTL 112 (308)
T ss_dssp TGGGCTTCCEEECCSSCCC-----------------CCGG-GTTCCSCCE-------EECCSCCCSCCGGGTTCTTCCEE
T ss_pred hhhccCCCCEEEccCCcCC-----------------CChh-HccCCCCCE-------EEccCCcCCCchhhcCCCCCCEE
Confidence 3667888999999888721 1111 223333333 99999999999899999999999
Q ss_pred EccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccccCCCCc
Q 005381 561 DLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNH 640 (699)
Q Consensus 561 dLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~ 640 (699)
+|++|.++.++++..+++|+.|++++|.++++ ..+..+++|+.|+|++|.|+.++. +..++-+..+++++|.
T Consensus 113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNI---SPLAGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTLKADDNK 184 (308)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSC
T ss_pred ECCCCCCCCchhhcCCCCCCEEECCCCccCcC---ccccCCCCccEEEccCCcCCCChh-----hcCCCCCCEEECCCCc
Confidence 99999999988899999999999999999887 348889999999999999998752 4455555556777777
Q ss_pred cceeecCCcchhhhhhccCCCC-CccEEEecCCCCC-CccchHHHhhcCCcccccc
Q 005381 641 GQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIV-NEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 641 l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~-~~~~~~~~~~~l~~L~~LD 694 (699)
+..+. .+..+ +|+.|+|++|.|. .+. +..+++|+.||
T Consensus 185 l~~~~------------~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~ 223 (308)
T 1h6u_A 185 ISDIS------------PLASLPNLIEVHLKNNQISDVSP-----LANTSNLFIVT 223 (308)
T ss_dssp CCCCG------------GGGGCTTCCEEECTTSCCCBCGG-----GTTCTTCCEEE
T ss_pred cCcCh------------hhcCCCCCCEEEccCCccCcccc-----ccCCCCCCEEE
Confidence 74321 26778 9999999999993 221 46678887765
No 32
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=1.2e-11 Score=118.37 Aligned_cols=156 Identities=12% Similarity=0.023 Sum_probs=143.0
Q ss_pred CCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005381 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA 135 (699)
Q Consensus 56 P~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~ 135 (699)
++..++|+..+.+....++ +++++..++++|+.+|++..+|..++.++.+. +.++++++.+.+++..
T Consensus 2 ge~~~iy~~lG~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~a~~~~~~~~~~ 68 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGD------------FDGAIRAYKKVLKADPNNVETLLKLGKTYMDI-GLPNDAIESLKKFVVL 68 (184)
T ss_dssp --CHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhc
Confidence 4678999999999988865 99999999999999999999999999999987 6999999999999999
Q ss_pred CCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHH
Q 005381 136 DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (699)
Q Consensus 136 dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~ 215 (699)
+|.+..+|...+.+....+.+ +..++++.++++.+|.+..+|..++.++..++. ++++++.+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 69 DTTSAEAYYILGSANFMIDEK-QAAIDALQRAIALNTVYADAYYKLGLVYDSMGE------------HDKAIEAYEKTIS 135 (184)
T ss_dssp CCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC------------chhHHHHHHHHHH
Confidence 999999999999999999888 688999999999999999999999999888754 8999999999999
Q ss_pred hCCCCchhHHHHHHHHcCcCCC
Q 005381 216 TDPDDQSGWFYHLWLLDQTVRV 237 (699)
Q Consensus 216 ~dP~d~SaW~Y~~~Ll~~~~~~ 237 (699)
.+|++..+|+.+..++....+.
T Consensus 136 ~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 136 IKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCH
T ss_pred hcchhhhHHHHHHHHHHHCCCH
Confidence 9999999999999988765543
No 33
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.40 E-value=4.1e-13 Score=140.57 Aligned_cols=159 Identities=21% Similarity=0.103 Sum_probs=120.9
Q ss_pred CCcHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCccc-CCCCC
Q 005381 476 SHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLG-SFDKL 554 (699)
Q Consensus 476 ~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~-~l~~L 554 (699)
+.....+..+.+|+.|++++|.+.. +... ..+.+++ .|++++|.++.++ .+..+
T Consensus 45 ~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~-~~l~~L~-------~L~Ls~N~l~~l~~~~~~l 99 (290)
T 1p9a_G 45 TFSLATLMPYTRLTQLNLDRAELTK-----------------LQVD-GTLPVLG-------TLDLSHNQLQSLPLLGQTL 99 (290)
T ss_dssp EEEGGGGTTCTTCCEEECTTSCCCE-----------------EECC-SCCTTCC-------EEECCSSCCSSCCCCTTTC
T ss_pred ccCHHHhhcCCCCCEEECCCCccCc-----------------ccCC-CCCCcCC-------EEECCCCcCCcCchhhccC
Confidence 3445567788899999999887211 1110 1223333 3999999999888 68889
Q ss_pred cccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcc
Q 005381 555 LWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSH 632 (699)
Q Consensus 555 ~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ 632 (699)
++|+.|+|++|+|+.+++ |..+++|+.|+|++|+|+.++ +..|..+++|+.|+|++|+|+.+|...+ ..++.+.
T Consensus 100 ~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~---~~l~~L~ 175 (290)
T 1p9a_G 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPAGLL---NGLENLD 175 (290)
T ss_dssp TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCCTTTT---TTCTTCC
T ss_pred CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCcCCccCHHHh---cCcCCCC
Confidence 999999999999998875 999999999999999999873 3567889999999999999999874333 3344444
Q ss_pred cccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 633 SVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 633 ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
.+++++|.++. +|..+..+ +|+.|+|++|++
T Consensus 176 ~L~L~~N~l~~-----------ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 176 TLLLQENSLYT-----------IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EEECCSSCCCC-----------CCTTTTTTCCCSEEECCSCCB
T ss_pred EEECCCCcCCc-----------cChhhcccccCCeEEeCCCCc
Confidence 55777777753 34566667 999999999999
No 34
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.40 E-value=8.9e-13 Score=134.65 Aligned_cols=141 Identities=22% Similarity=0.259 Sum_probs=96.6
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
|+|++|.++.++ .+..+++|++|+|++|.|+.+++ |..+++|+.|+|++|.|+.++ +..+..+++|+.|+|++|.
T Consensus 40 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~ 118 (251)
T 3m19_A 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGGNQ 118 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred EEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC-hhHhcccCCCCEEEcCCCc
Confidence 888888888765 57788888888888888877666 788888888888888888763 3567778888888888888
Q ss_pred CCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCcccc
Q 005381 614 IGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKW 692 (699)
Q Consensus 614 I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~ 692 (699)
|+.+|... +..++.+..+++++|.+..+. +..|..+ +|+.|+|++|.|. .+....+..+++|+.
T Consensus 119 l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~----------~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 119 LKSLPSGV---FDRLTKLKELRLNTNQLQSIP----------AGAFDKLTNLQTLSLSTNQLQ--SVPHGAFDRLGKLQT 183 (251)
T ss_dssp CCCCCTTT---TTTCTTCCEEECCSSCCCCCC----------TTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCE
T ss_pred CCCcChhH---hccCCcccEEECcCCcCCccC----------HHHcCcCcCCCEEECCCCcCC--ccCHHHHhCCCCCCE
Confidence 88775322 233334444566677664322 2357777 8888888888882 111122345666665
Q ss_pred cc
Q 005381 693 LD 694 (699)
Q Consensus 693 LD 694 (699)
||
T Consensus 184 L~ 185 (251)
T 3m19_A 184 IT 185 (251)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 35
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.40 E-value=7.2e-13 Score=136.85 Aligned_cols=141 Identities=22% Similarity=0.216 Sum_probs=105.7
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
|++++|.++.++ .|..+++|++|+|++|.++.++. |..+++|+.|++++|.++.++ +..+..+++|+.|+|++|.
T Consensus 66 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 66 LYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp EECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeC-HHHhCcCcCCCEEECCCCc
Confidence 999999999877 46889999999999999988876 788999999999999998873 4567889999999999999
Q ss_pred CCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCcccc
Q 005381 614 IGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKW 692 (699)
Q Consensus 614 I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~ 692 (699)
|+.+|... +..++-+..+++++|.+..+. +..|..+ +|+.|+|++|.|. .+....+..+++|+.
T Consensus 145 l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~----------~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 145 LQSLPKGV---FDKLTSLKELRLYNNQLKRVP----------EGAFDKLTELKTLKLDNNQLK--RVPEGAFDSLEKLKM 209 (270)
T ss_dssp CCCCCTTT---TTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCE
T ss_pred CCccCHhH---ccCCcccceeEecCCcCcEeC----------hhHhccCCCcCEEECCCCcCC--cCCHHHhccccCCCE
Confidence 99886432 333444445567777664432 2357788 9999999999982 111223355677776
Q ss_pred cc
Q 005381 693 LD 694 (699)
Q Consensus 693 LD 694 (699)
||
T Consensus 210 L~ 211 (270)
T 2o6q_A 210 LQ 211 (270)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.39 E-value=3.8e-13 Score=148.93 Aligned_cols=123 Identities=22% Similarity=0.221 Sum_probs=61.2
Q ss_pred EEccC-CCCCccc--CCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccC
Q 005381 538 LQLKN-LSLSRLG--SFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEI 614 (699)
Q Consensus 538 L~Ls~-n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I 614 (699)
|+|++ +.+..++ .|..+++|+.|+|++|.++.+|.+..+++|+.|+|++|.|+.+ .+..|..+++|+.|+|++|+|
T Consensus 165 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI-RPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp EECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCC
T ss_pred eCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc-ChhhhccCccCCEEECCCCce
Confidence 45544 3333333 3555555555555555555555555555555555555555554 234455555555555555555
Q ss_pred CCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 615 GAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 615 ~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
+.++.. .+..++-+..+++++|.++.+. +..|..+ +|+.|+|++|++
T Consensus 244 ~~~~~~---~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 244 QVIERN---AFDNLQSLVEINLAHNNLTLLP----------HDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEECTT---SSTTCTTCCEEECTTSCCCCCC----------TTTTSSCTTCCEEECCSSCE
T ss_pred eEEChh---hhcCCCCCCEEECCCCCCCccC----------hhHhccccCCCEEEcCCCCc
Confidence 554321 2222233333344555443322 2345555 666666666666
No 37
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.39 E-value=2.8e-13 Score=141.92 Aligned_cols=123 Identities=29% Similarity=0.333 Sum_probs=103.1
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGA 616 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~ 616 (699)
|+|++|.++.++....+++|+.|+|++|.|+.+|. +..+++|+.|+|++|+|++++ +..|..+++|+.|+|++|+|+.
T Consensus 60 L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 60 LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP-LGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp EECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCC-SSTTTTCTTCCEEECTTSCCCC
T ss_pred EECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccC-HHHHcCCCCCCEEECCCCCCCc
Confidence 99999999988877899999999999999999998 999999999999999999873 4678999999999999999999
Q ss_pred CCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 617 HSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 617 lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
+|.+. +..++-+..+++++|.++.+. +..|..+ +|+.|+|++|.|
T Consensus 139 ~~~~~---~~~l~~L~~L~L~~N~l~~l~----------~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 139 LPPGL---LTPTPKLEKLSLANNNLTELP----------AGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp CCTTT---TTTCTTCCEEECTTSCCSCCC----------TTTTTTCTTCCEEECCSSCC
T ss_pred cChhh---cccccCCCEEECCCCcCCccC----------HHHhcCcCCCCEEECCCCcC
Confidence 87433 334444455677888775432 2457788 999999999999
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.39 E-value=3.2e-13 Score=150.09 Aligned_cols=77 Identities=26% Similarity=0.327 Sum_probs=36.1
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccC-CCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSH-NELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYN 612 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~-N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N 612 (699)
|+|++|.++.++ .+..+++|+.|+|++ |.++.++. |..+++|+.|+|++|.|+.+ +.+..+++|+.|+|++|
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---PNLTPLVGLEELEMSGN 228 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---CCCTTCTTCCEEECTTS
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---ccccccccccEEECcCC
Confidence 555555555443 344445555555544 33344433 44444555555555544443 22444444455555555
Q ss_pred cCCCC
Q 005381 613 EIGAH 617 (699)
Q Consensus 613 ~I~~l 617 (699)
.|+.+
T Consensus 229 ~l~~~ 233 (452)
T 3zyi_A 229 HFPEI 233 (452)
T ss_dssp CCSEE
T ss_pred cCccc
Confidence 44444
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.39 E-value=4.4e-13 Score=148.91 Aligned_cols=187 Identities=17% Similarity=0.119 Sum_probs=129.7
Q ss_pred CCcHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHh-hhhccCCCCCCCCCCCCeEEccCCCCCccc--CCC
Q 005381 476 SHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLL-SRCFHYSNSPSNRGSPMCLQLKNLSLSRLG--SFD 552 (699)
Q Consensus 476 ~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~-~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~--~l~ 552 (699)
+..++.+..+.+|++||+++|.+. .+. ..+..+.+++. |+|++|.++.++ .+.
T Consensus 89 ~~~~~~~~~l~~L~~L~Ls~n~i~-----------------~~~~~~~~~l~~L~~-------L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 89 MIQADTFRHLHHLEVLQLGRNSIR-----------------QIEVGAFNGLASLNT-------LELFDNWLTVIPSGAFE 144 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCC-----------------EECTTTTTTCTTCCE-------EECCSSCCSBCCTTTSS
T ss_pred eECHHHcCCCCCCCEEECCCCccC-----------------CcChhhccCcccCCE-------EECCCCcCCccChhhhc
Confidence 334556778999999999999821 111 12223334333 999999999887 589
Q ss_pred CCcccCEEEccCCCCCCCcC--Cccccccceeeccc-CCCCCCCCCccccccccccccccccccCCCCCcccccccCCCC
Q 005381 553 KLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSN-NILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSP 629 (699)
Q Consensus 553 ~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~-N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ 629 (699)
.+++|++|+|++|.|+.++. |..+++|+.|++++ |.+..+ .+..+..+++|+.|+|++|.|+.+| . +..++
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~--~---~~~l~ 218 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI-SEGAFEGLFNLKYLNLGMCNIKDMP--N---LTPLV 218 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-CTTTTTTCTTCCEEECTTSCCSSCC--C---CTTCT
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc-ChhhccCCCCCCEEECCCCcccccc--c---ccccc
Confidence 99999999999999999887 99999999999998 566665 3356889999999999999999886 2 33444
Q ss_pred CcccccCCCCccceeecC-------------Ccchhh-hhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCcccccc
Q 005381 630 LSHSVGSEWNHGQTVIDD-------------DIKSYW-EAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 630 ll~ll~l~~N~l~~~~~~-------------~~~~~~-~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~LD 694 (699)
.+..+++++|.+..+... .++.+. ..+..|.++ +|+.|+|++|.|. .+....+..+++|+.||
T Consensus 219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS--SLPHDLFTPLRYLVELH 296 (452)
T ss_dssp TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS--CCCTTSSTTCTTCCEEE
T ss_pred cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC--ccChHHhccccCCCEEE
Confidence 445557777776544221 111111 124567777 8888888888882 11112234566676654
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.38 E-value=5e-13 Score=147.92 Aligned_cols=139 Identities=21% Similarity=0.220 Sum_probs=87.5
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccC-CCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSH-NELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYN 612 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~-N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N 612 (699)
|+|++|.++.++ .|..+++|+.|+|++ |.++.++. |.++++|+.|+|++|.|+.+ +.+..+++|+.|+|++|
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---PNLTPLIKLDELDLSGN 217 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC---CCCTTCSSCCEEECTTS
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc---cccCCCcccCEEECCCC
Confidence 666666666555 466666777777766 34455554 66677777777777777665 24566677777777777
Q ss_pred cCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCccc
Q 005381 613 EIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLK 691 (699)
Q Consensus 613 ~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~ 691 (699)
.|+.++. ..+..++.+..+.+.+|.+..+. +..|.++ +|+.|+|++|.|. .+....+..+++|+
T Consensus 218 ~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~----------~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 218 HLSAIRP---GSFQGLMHLQKLWMIQSQIQVIE----------RNAFDNLQSLVEINLAHNNLT--LLPHDLFTPLHHLE 282 (440)
T ss_dssp CCCEECT---TTTTTCTTCCEEECTTCCCCEEC----------TTSSTTCTTCCEEECTTSCCC--CCCTTTTSSCTTCC
T ss_pred ccCccCh---hhhccCccCCEEECCCCceeEEC----------hhhhcCCCCCCEEECCCCCCC--ccChhHhccccCCC
Confidence 7766642 22333333444456666654432 4578888 9999999999992 11122345677777
Q ss_pred ccc
Q 005381 692 WLD 694 (699)
Q Consensus 692 ~LD 694 (699)
.||
T Consensus 283 ~L~ 285 (440)
T 3zyj_A 283 RIH 285 (440)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.38 E-value=3e-13 Score=144.13 Aligned_cols=122 Identities=11% Similarity=-0.024 Sum_probs=89.1
Q ss_pred EEccCCCCCccc-CCCCCcccCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCC
Q 005381 538 LQLKNLSLSRLG-SFDKLLWVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIG 615 (699)
Q Consensus 538 L~Ls~n~l~~l~-~l~~L~~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~ 615 (699)
|++++|.++.++ .+..+++|+.|+|++|.++.+|. +..+++|+.|+|++|.+.+. .|..+..+++|+.|+|++|.+.
T Consensus 188 L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp EEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTC
T ss_pred EECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCch
Confidence 888888888776 67788888888888888887777 88888888888888877664 4566778888888888887654
Q ss_pred C-CCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 616 A-HSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 616 ~-lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
. +| ..+..++.+..+++++|.+ ...+|..+.++ +|+.+++..|.+
T Consensus 267 ~~~p----~~~~~l~~L~~L~L~~n~~----------~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 267 LTLP----LDIHRLTQLEKLDLRGCVN----------LSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CBCC----TTGGGCTTCCEEECTTCTT----------CCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhcc----hhhhcCCCCCEEeCCCCCc----------hhhccHHHhhccCceEEeCCHHHH
Confidence 3 33 2233333344445555444 33567899999 999999998877
No 42
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.38 E-value=2.8e-12 Score=116.83 Aligned_cols=123 Identities=18% Similarity=0.112 Sum_probs=111.7
Q ss_pred HHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHH
Q 005381 49 TKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRL 128 (699)
Q Consensus 49 ~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~ 128 (699)
.++..+||+...+|+.+|..+...+. |++++..++++|+.+|++..+|..++.++.++ +.++++++.
T Consensus 3 ar~a~inP~~a~~~~~~G~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~ 69 (126)
T 4gco_A 3 ARLAYINPELAQEEKNKGNEYFKKGD------------YPTAMRHYNEAVKRDPENAILYSNRAACLTKL-MEFQRALDD 69 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred hHHHHHCHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhh-ccHHHHHHH
Confidence 35567999999999999999988865 99999999999999999999999999999988 699999999
Q ss_pred HHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHH
Q 005381 129 LDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLL 185 (699)
Q Consensus 129 ~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll 185 (699)
+++++++||.+..+|..++.+...+|.+ ++++++++++++.+|+|..|+...+.++
T Consensus 70 ~~~al~~~p~~~~a~~~lg~~~~~~~~~-~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 70 CDTCIRLDSKFIKGYIRKAACLVAMREW-SKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999998 7899999999999999999987766543
No 43
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.37 E-value=1.4e-12 Score=136.63 Aligned_cols=164 Identities=20% Similarity=0.245 Sum_probs=127.3
Q ss_pred HHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCCcccCEEE
Q 005381 482 LELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKLLWVQMLD 561 (699)
Q Consensus 482 l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L~~L~~Ld 561 (699)
+..+.+|+.|++++|... .+ ..+..+.+++. |++++|.++.++.+..+++|+.|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~-----------------~~-~~~~~l~~L~~-------L~L~~n~l~~~~~l~~l~~L~~L~ 96 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-----------------SV-QGIQYLPNVTK-------LFLNGNKLTDIKPLANLKNLGWLF 96 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-----------------CC-TTGGGCTTCCE-------EECCSSCCCCCGGGTTCTTCCEEE
T ss_pred hhhcCcccEEEccCCCcc-----------------cC-hhHhcCCCCCE-------EEccCCccCCCcccccCCCCCEEE
Confidence 457889999999988721 11 11233344444 999999999888899999999999
Q ss_pred ccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccccCCCCcc
Q 005381 562 LSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHG 641 (699)
Q Consensus 562 LS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l 641 (699)
|++|.++.++.+..+++|+.|++++|.|+.+ ..+..+++|+.|++++|.|+.++ .+..++-+..+++++|.+
T Consensus 97 l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 97 LDENKVKDLSSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp CCSSCCCCGGGGTTCTTCCEEECTTSCCCCC---GGGGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSCC
T ss_pred CCCCcCCCChhhccCCCCCEEECCCCcCCCC---hhhcCCCCCCEEEccCCcCCcch-----hhccCCCCCEEEccCCcc
Confidence 9999999988899999999999999999986 56888999999999999999873 233444455557777776
Q ss_pred ceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCcccccc
Q 005381 642 QTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 642 ~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~LD 694 (699)
..+ +. +..+ +|+.|+|++|.|.. +.. +..+++|+.||
T Consensus 169 ~~~-----------~~-l~~l~~L~~L~L~~N~i~~--l~~--l~~l~~L~~L~ 206 (291)
T 1h6t_A 169 SDI-----------VP-LAGLTKLQNLYLSKNHISD--LRA--LAGLKNLDVLE 206 (291)
T ss_dssp CCC-----------GG-GTTCTTCCEEECCSSCCCB--CGG--GTTCTTCSEEE
T ss_pred ccc-----------hh-hcCCCccCEEECCCCcCCC--Chh--hccCCCCCEEE
Confidence 432 22 7888 99999999999931 211 46688888776
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.37 E-value=1e-12 Score=142.90 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=72.2
Q ss_pred CcHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHh-hhhccCCCCCCCCCCCCeEEccCCCCCccc--CCCC
Q 005381 477 HSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLL-SRCFHYSNSPSNRGSPMCLQLKNLSLSRLG--SFDK 553 (699)
Q Consensus 477 ~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~-~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~--~l~~ 553 (699)
.....+..+++|++||+++|.... ++ ..+..+.+++. |+|++|.++.++ .+..
T Consensus 60 l~~~~~~~l~~L~~L~L~~n~i~~-----------------~~~~~~~~l~~L~~-------L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 60 LPAALLDSFRQVELLNLNDLQIEE-----------------IDTYAFAYAHTIQK-------LYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCE-----------------ECTTTTTTCTTCCE-------EECCSSCCCCCCTTTTTT
T ss_pred CChhHhcccccCcEEECCCCcccc-----------------cChhhccCCCCcCE-------EECCCCCCCcCCHHHhcC
Confidence 344567777888888888776211 11 11122223322 677777776654 4666
Q ss_pred CcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCC
Q 005381 554 LLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHS 618 (699)
Q Consensus 554 L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp 618 (699)
+++|++|+|++|.++.+|. |..+++|+.|++++|.++.+. +..+..+++|+.|++++|.++.++
T Consensus 116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~ 181 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTHVD 181 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSSCCSBCC
T ss_pred CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCCcCCccc
Confidence 7777777777777766665 566777777777777776652 345666677777777777776654
No 45
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.37 E-value=4.4e-11 Score=128.37 Aligned_cols=166 Identities=13% Similarity=0.044 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCh
Q 005381 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSI 122 (699)
Q Consensus 43 eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~ 122 (699)
+|++.+.+++..+|++..+|...+.++...++ +++++..+++++..+|.+..+|...+.++... +.+
T Consensus 119 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~ 185 (388)
T 1w3b_A 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGR------------LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ-GEI 185 (388)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCH
Confidence 44444444444444444444444444444432 66677777777777777777777777666655 466
Q ss_pred HHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhch
Q 005381 123 DNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKV 202 (699)
Q Consensus 123 ~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~ 202 (699)
+++++.++++++++|.+..+|...+.+....+.+ ++.++.+.++++.+|.+..+|..++.++...++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------------ 252 (388)
T 1w3b_A 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF-DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL------------ 252 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT-THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC------------
Confidence 7777777777777777777777777777777666 456666677777777777777777666655533
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHcCc
Q 005381 203 LPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (699)
Q Consensus 203 ~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~ 234 (699)
++++++.+.+++..+|++..+|+.+..++...
T Consensus 253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 78888999999999999888888877777553
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.37 E-value=7.1e-13 Score=152.67 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=81.0
Q ss_pred CCcHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHh-hhhccCCCCCCCCCCCCeEEccCCCCCccc--CCC
Q 005381 476 SHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLL-SRCFHYSNSPSNRGSPMCLQLKNLSLSRLG--SFD 552 (699)
Q Consensus 476 ~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~-~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~--~l~ 552 (699)
...+..+..++.|++||+++|.+.. ++ ..+..+..++. |+|++|.++.++ .|+
T Consensus 65 ~lp~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~~l~~L~~-------L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 65 KLPAALLDSFRQVELLNLNDLQIEE-----------------IDTYAFAYAHTIQK-------LYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCE-----------------ECTTTTTTCTTCCE-------EECCSSCCCCCCTTTTT
T ss_pred CcCHHHHccCCCCcEEECCCCCCCC-----------------CChHHhcCCCCCCE-------EECCCCcCCCCCHHHHc
Confidence 4455677888888888888887211 11 11222233333 777777777665 567
Q ss_pred CCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCc
Q 005381 553 KLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSI 619 (699)
Q Consensus 553 ~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~ 619 (699)
.+++|++|+|++|.|+.+|+ |..+++|+.|+|++|.|+++ .+..++.+++|+.|+|++|.|+.+++
T Consensus 121 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~ 188 (597)
T 3oja_B 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHVDL 188 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECTTSCCSBCCG
T ss_pred CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcEEECcCCCCCCcCh
Confidence 77888888888888877776 67777888888888877775 33557777778888888887777653
No 47
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.37 E-value=1.5e-11 Score=127.53 Aligned_cols=182 Identities=12% Similarity=-0.055 Sum_probs=163.6
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHH
Q 005381 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAW 108 (699)
Q Consensus 29 ~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW 108 (699)
.........|.+ ++|++++.+++..+|.+..+|.....++...++ +++++..+++++..+|++..+|
T Consensus 27 ~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~ 93 (330)
T 3hym_B 27 SLAERHYYNCDF-KMCYKLTSVVMEKDPFHASCLPVHIGTLVELNK------------ANELFYLSHKLVDLYPSNPVSW 93 (330)
T ss_dssp HHHHHHHHTTCH-HHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTC------------HHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhh------------HHHHHHHHHHHHHhCcCCHHHH
Confidence 444445566887 899999999999999999999999998887765 8999999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Q 005381 109 HHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNL 188 (699)
Q Consensus 109 ~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l 188 (699)
...+.++......+++++++++++++.+|.+..+|...+.+....+.+ ++.++++.++++.+|.+..+|.+++.++...
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH-DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999999988733899999999999999999999999999999999998 7899999999999999999999999888776
Q ss_pred hhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCC
Q 005381 189 LKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (699)
Q Consensus 189 ~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~ 236 (699)
+. ++++++.+.+++..+|++..+|+.+..++....+
T Consensus 173 ~~------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~ 208 (330)
T 3hym_B 173 NN------------SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE 208 (330)
T ss_dssp TC------------HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC
T ss_pred hh------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc
Confidence 44 7999999999999999999999999888866443
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.37 E-value=1.7e-12 Score=134.94 Aligned_cols=171 Identities=22% Similarity=0.156 Sum_probs=126.5
Q ss_pred cccccccCCCCCccccchhhhHHhhhhccchHHHh-hhhccCCCCCCCCCCCCeEEccCCCCCccc--CCCCCcccCEEE
Q 005381 485 YNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLL-SRCFHYSNSPSNRGSPMCLQLKNLSLSRLG--SFDKLLWVQMLD 561 (699)
Q Consensus 485 l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~-~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~--~l~~L~~L~~Ld 561 (699)
..+|+.|++++|.+. .++ ..+..+.+++. |++++|.++.+. .+..+++|++|+
T Consensus 31 ~~~l~~L~l~~n~i~-----------------~~~~~~~~~~~~L~~-------L~l~~n~l~~~~~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 31 PAASQRIFLHGNRIS-----------------HVPAASFRACRNLTI-------LWLHSNVLARIDAAAFTGLALLEQLD 86 (285)
T ss_dssp CTTCSEEECTTSCCC-----------------EECTTTTTTCTTCCE-------EECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCcCC-----------------ccCHHHcccCCCCCE-------EECCCCccceeCHhhcCCccCCCEEe
Confidence 468899999988721 111 11222333333 999999999774 799999999999
Q ss_pred ccCCC-CCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccccCCC
Q 005381 562 LSHNE-LRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEW 638 (699)
Q Consensus 562 LS~N~-L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~ 638 (699)
|++|. ++.+++ +..+++|+.|++++|.++.+ .+..+..+++|+.|++++|.|+.++.. .+..++.+..+++++
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~ 162 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDD---TFRDLGNLTHLFLHG 162 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCS
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEE-CHhHhhCCcCCCEEECCCCcccccCHh---HhccCCCccEEECCC
Confidence 99997 888854 99999999999999999987 346788999999999999999988632 234444455567778
Q ss_pred CccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCccccccC
Q 005381 639 NHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWLDG 695 (699)
Q Consensus 639 N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~LD~ 695 (699)
|.+..+. +..|..+ +|+.|+|++|.+. ......+..+++|+.||-
T Consensus 163 n~l~~~~----------~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 163 NRISSVP----------ERAFRGLHSLDRLLLHQNRVA--HVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp SCCCEEC----------TTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEEC
T ss_pred CcccccC----------HHHhcCccccCEEECCCCccc--ccCHhHccCcccccEeeC
Confidence 8775432 2358888 9999999999993 111123456788887763
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.37 E-value=5.8e-11 Score=117.69 Aligned_cols=170 Identities=16% Similarity=0.068 Sum_probs=149.6
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~ 114 (699)
...|.+ ++|++.+.+++..+|++..+|...+.++...+. +++++..+++++..+|++..+|...+.+
T Consensus 68 ~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 134 (243)
T 2q7f_A 68 SSVNEL-ERALAFYDKALELDSSAATAYYGAGNVYVVKEM------------YKEAKDMFEKALRAGMENGDLFYMLGTV 134 (243)
T ss_dssp HHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHcCCH-HHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc------------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445666 799999999999999999999999988887754 8999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhcc
Q 005381 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVE 194 (699)
Q Consensus 115 L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~ 194 (699)
+... +.+++++++++++++.+|.+..+|...+.+....+.+ ++.++++.++++.+|.+..+|..++.+....+.
T Consensus 135 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---- 208 (243)
T 2q7f_A 135 LVKL-EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML-DEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN---- 208 (243)
T ss_dssp HHHT-SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----
T ss_pred HHHh-ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC----
Confidence 8877 6899999999999999999999999999999999988 678899999999999999999999988877644
Q ss_pred CccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005381 195 GFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 195 ~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll 231 (699)
++++++.+.+++..+|++..+|..+..+.
T Consensus 209 --------~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 209 --------REKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp --------TTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred --------HHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 68999999999999999999998765554
No 50
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.36 E-value=3.4e-11 Score=129.26 Aligned_cols=183 Identities=9% Similarity=-0.009 Sum_probs=92.9
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~ 114 (699)
...|++ ++|+..+++++.++|++..+|...+.++...+. +++++..+++++..+|++..+|...+.+
T Consensus 180 ~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 180 NAQGEI-WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI------------FDRAVAAYLRALSLSPNHAVVHGNLACV 246 (388)
T ss_dssp HTTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC------------TTHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCcCCHHHHHHHHHH
Confidence 344444 567777777777777777777666666665543 4444445555555555555555444444
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhc-
Q 005381 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKV- 193 (699)
Q Consensus 115 L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~- 193 (699)
+... +.++++++.++++++.+|.+..+|...+.++...|.+ ++.+++++++++.+|.+..+|...+.++...+....
T Consensus 247 ~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 247 YYEQ-GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV-AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHT-TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Confidence 4443 3444455555555555554444444444444444444 344444444444444444444444444433322000
Q ss_pred -----------cCc----------cchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHc
Q 005381 194 -----------EGF----------VSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (699)
Q Consensus 194 -----------~~~----------~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~ 232 (699)
... ....+.++++++.+.+++..+|++..+|+.+..++.
T Consensus 325 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence 000 000012466666666666666666666666665553
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.35 E-value=4e-13 Score=140.98 Aligned_cols=124 Identities=22% Similarity=0.217 Sum_probs=91.3
Q ss_pred EEccCCCCCccc---CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG---SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYN 612 (699)
Q Consensus 538 L~Ls~n~l~~l~---~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N 612 (699)
|++++|.++.++ .+..+++|++|++++|.++.+++ +..+++|+.|++++|.+++...|..+..+++|+.|+|++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 888888887664 57788888888888888855443 8888888888998888875223566788888999999999
Q ss_pred cCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 613 EIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 613 ~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
.|+.++. ..+..++-+..+++++|.+..+. +..+..+ +|+.|+|++|.|
T Consensus 186 ~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 186 QLEQLSP---TAFNSLSSLQVLNMSHNNFFSLD----------TFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp CCCEECT---TTTTTCTTCCEEECTTSCCSBCC----------SGGGTTCTTCCEEECTTSCC
T ss_pred CcCCcCH---HHhcCCCCCCEEECCCCccCccC----------hhhccCcccCCEeECCCCCC
Confidence 8887742 23344444455577777764432 2357778 999999999999
No 52
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.35 E-value=3.1e-11 Score=128.32 Aligned_cols=177 Identities=8% Similarity=0.009 Sum_probs=130.5
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~ 114 (699)
...|.+ ++|+.++.+++..+|++..+|+..+.++...++ +++++..+++++..+|++..+|...+.+
T Consensus 76 ~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 76 LKEGDL-PVTILFMEAAILQDPGDAEAWQFLGITQAENEN------------EQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp HHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCH-HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 344555 567777777777777777777777777666644 6667777777777777777777666666
Q ss_pred HHhCC-------------------------------------------CChHHHHHHHHHHHHhCCC--ChhhhhHHHHH
Q 005381 115 LSKGH-------------------------------------------SSIDNELRLLDKFQKADSR--NFHAWNYRRFV 149 (699)
Q Consensus 115 L~~~~-------------------------------------------~~~~~EL~~~~k~L~~dpr--N~haW~yR~~v 149 (699)
+.... +.+++++++++++++++|. +..+|...+.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 65441 2344556666666666666 77788888888
Q ss_pred HHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005381 150 AASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (699)
Q Consensus 150 l~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~ 229 (699)
....|.+ +++++++.++++.+|.+..+|...+.++...+. ++++++.+.+++..+|++..+|+.+..
T Consensus 223 ~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~l~~ 289 (365)
T 4eqf_A 223 FHLSGEF-NRAIDAFNAALTVRPEDYSLWNRLGATLANGDR------------SEEAVEAYTRALEIQPGFIRSRYNLGI 289 (365)
T ss_dssp HHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 8888887 678888889999999988889888888877644 799999999999999999999999888
Q ss_pred HHcCcCCC
Q 005381 230 LLDQTVRV 237 (699)
Q Consensus 230 Ll~~~~~~ 237 (699)
++....+.
T Consensus 290 ~~~~~g~~ 297 (365)
T 4eqf_A 290 SCINLGAY 297 (365)
T ss_dssp HHHHHTCC
T ss_pred HHHHCCCH
Confidence 87665443
No 53
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=2.4e-14 Score=141.01 Aligned_cols=162 Identities=23% Similarity=0.294 Sum_probs=113.7
Q ss_pred HHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCCcccCEEE
Q 005381 482 LELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKLLWVQMLD 561 (699)
Q Consensus 482 l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L~~L~~Ld 561 (699)
+.....++.++++.+.+...... ++.++..+..+.+++. |++++|.++.++.+..+++|+.|+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~----------l~~l~~~~~~l~~L~~-------L~ls~n~l~~l~~~~~l~~L~~L~ 76 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPP----------IEKMDATLSTLKACKH-------LALSTNNIEKISSLSGMENLRILS 76 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTT----------CCCCHHHHHHTTTCSE-------EECSEEEESCCCCHHHHTTCCEEE
T ss_pred HHhcccccCcchheeEeccccCc----------HhhhhHHHhcCCCCCE-------EECCCCCCccccccccCCCCCEEE
Confidence 34456677777777664433222 1112223333444444 788888887777777788888888
Q ss_pred ccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccccCCCCc
Q 005381 562 LSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNH 640 (699)
Q Consensus 562 LS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~ 640 (699)
+++|.++.+|. +..+++|+.|++++|+|+++ +.+..+++|+.|+|++|+|+.++.
T Consensus 77 l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l---~~~~~l~~L~~L~l~~N~i~~~~~--------------------- 132 (198)
T 1ds9_A 77 LGRNLIKKIENLDAVADTLEELWISYNQIASL---SGIEKLVNLRVLYMSNNKITNWGE--------------------- 132 (198)
T ss_dssp EEEEEECSCSSHHHHHHHCSEEEEEEEECCCH---HHHHHHHHSSEEEESEEECCCHHH---------------------
T ss_pred CCCCCcccccchhhcCCcCCEEECcCCcCCcC---CccccCCCCCEEECCCCcCCchhH---------------------
Confidence 88888888877 66778888888888888775 357778888888888888876531
Q ss_pred cceeecCCcchhhhhhccCCCC-CccEEEecCCCC-CC-------ccchHHHhhcCCccccccCccCC
Q 005381 641 GQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI-VN-------EKFKSFLIKVLPGLKWLDGEQLH 699 (699)
Q Consensus 641 l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~-------~~~~~~~~~~l~~L~~LD~~~i~ 699 (699)
+..+..+ +|+.|++++|++ .. ..+...++..+++|+.||+.+|+
T Consensus 133 ---------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~ 185 (198)
T 1ds9_A 133 ---------------IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD 185 (198)
T ss_dssp ---------------HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGT
T ss_pred ---------------HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccC
Confidence 1246677 899999999999 21 34555667889999999999874
No 54
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.35 E-value=2.3e-11 Score=121.05 Aligned_cols=154 Identities=14% Similarity=-0.036 Sum_probs=140.7
Q ss_pred CCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005381 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA 135 (699)
Q Consensus 56 P~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~ 135 (699)
|.+..+|+.++.++...++ +++++..+++++..+|++..+|..++.++.+. +.+++++..+++++++
T Consensus 2 p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~ 68 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGR------------YDAALTLFERALKENPQDPEALYWLARTQLKL-GLVNPALENGKTLVAR 68 (217)
T ss_dssp --CCHHHHHHHHHHHHTTC------------HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 7888999999999988865 99999999999999999999999999999987 6999999999999999
Q ss_pred CCCChhhhhHHHHHHHhc-----------CCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHH
Q 005381 136 DSRNFHAWNYRRFVAASM-----------NRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLP 204 (699)
Q Consensus 136 dprN~haW~yR~~vl~~l-----------~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~ 204 (699)
+|.+..+|...+.++... |.+ ++.++.+.++++.+|.+..+|..++.++..+++ ++
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~------------~~ 135 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYL-EQALSVLKDAERVNPRYAPLHLQRGLVYALLGE------------RD 135 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HH
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC------------hH
Confidence 999999999999999999 887 689999999999999999999999999988755 79
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHcCcCC
Q 005381 205 DEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (699)
Q Consensus 205 eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~ 236 (699)
++++.+.+|+.++ ++..+|+.+..++....+
T Consensus 136 ~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~ 166 (217)
T 2pl2_A 136 KAEASLKQALALE-DTPEIRSALAELYLSMGR 166 (217)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcc-cchHHHHHHHHHHHHcCC
Confidence 9999999999999 999999988887765544
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.34 E-value=3.2e-11 Score=119.63 Aligned_cols=180 Identities=14% Similarity=0.071 Sum_probs=155.8
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHH
Q 005381 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHR 111 (699)
Q Consensus 32 ~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR 111 (699)
......|.+ ++|+.++.+++..+|++..+|...+.++...+. +++++..+++++..+|++..+|...
T Consensus 31 ~~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~l 97 (243)
T 2q7f_A 31 GRGSEFGDY-EKAAEAFTKAIEENKEDAIPYINFANLLSSVNE------------LERALAFYDKALELDSSAATAYYGA 97 (243)
T ss_dssp ------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhhCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCcchHHHHHH
Confidence 334556777 799999999999999999999999999988765 8999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhh
Q 005381 112 KWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR 191 (699)
Q Consensus 112 ~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~ 191 (699)
+.++... +.+++++++++++++.+|.+..+|...+.+....+.+ ++.+++++++++.+|.+..+|...+.++...+.
T Consensus 98 a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 174 (243)
T 2q7f_A 98 GNVYVVK-EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQP-KLALPYLQRAVELNENDTEARFQFGMCLANEGM- 174 (243)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHh-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC-
Confidence 9999887 6999999999999999999999999999999999988 789999999999999999999999998887754
Q ss_pred hccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCCCC
Q 005381 192 KVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRVD 238 (699)
Q Consensus 192 ~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~~~ 238 (699)
++++++.+.+++..+|++..+|+.+..++....+.+
T Consensus 175 -----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 210 (243)
T 2q7f_A 175 -----------LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENRE 210 (243)
T ss_dssp -----------CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT
T ss_pred -----------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHH
Confidence 689999999999999999999999888886654443
No 56
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=2.4e-12 Score=129.17 Aligned_cols=123 Identities=19% Similarity=0.218 Sum_probs=96.4
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
|+|++|.|+.++ .|..+++|+.|+|++|.|+.+++ |.++++|+.|+|++|.|+.++ +..|..+++|+.|+|++|+
T Consensus 37 L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP-KSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC-HhHccCCCCCCEEECCCCC
Confidence 888999988776 68888899999999999977744 888999999999999998873 3557888899999999999
Q ss_pred CCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 614 IGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 614 I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
|+.++.. .+..++.+..+++++|.++.+. +..|..+ +|+.|+|++|++
T Consensus 116 l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 116 INCLRVD---AFQDLHNLNLLSLYDNKLQTIA----------KGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTT---TTTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCE
T ss_pred CCEeCHH---HcCCCCCCCEEECCCCcCCEEC----------HHHHhCCCCCCEEEeCCCCc
Confidence 9888533 3344444555677777775543 2467788 999999999999
No 57
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.33 E-value=8.8e-12 Score=113.49 Aligned_cols=122 Identities=11% Similarity=0.018 Sum_probs=111.3
Q ss_pred HHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCch
Q 005381 96 SALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (699)
Q Consensus 96 ~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~ 175 (699)
++..+||+...+|..||..+.+. +.+++++++++++++++|.+..+|..++.+...+|.+ ++.+++++++|+.+|.+.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKK-GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF-QRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccH-HHHHHHHHHHHHhhhhhh
Confidence 45568999999999999999887 6999999999999999999999999999999999998 789999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005381 176 SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 176 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll 231 (699)
.+|.+++.++..++. ++++++.+.+++.++|+|..++.-++-+|
T Consensus 82 ~a~~~lg~~~~~~~~------------~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 82 KGYIRKAACLVAMRE------------WSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999988855 89999999999999999999998766554
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.33 E-value=7.3e-14 Score=147.79 Aligned_cols=174 Identities=16% Similarity=0.086 Sum_probs=125.9
Q ss_pred CcHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCC-ccc-CCCCC
Q 005381 477 HSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLS-RLG-SFDKL 554 (699)
Q Consensus 477 ~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~-~l~-~l~~L 554 (699)
..++.+..+++|++||+++|.+... ++..+..+.+++. |++++|.++ .++ .+..+
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~----------------~p~~~~~l~~L~~-------L~L~~N~l~~~~p~~l~~l 172 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGT----------------LPPSISSLPNLVG-------ITFDGNRISGAIPDSYGSF 172 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESC----------------CCGGGGGCTTCCE-------EECCSSCCEEECCGGGGCC
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCc----------------CChHHhcCCCCCe-------EECcCCcccCcCCHHHhhh
Confidence 4455677889999999999883321 1222333444444 999999998 565 78888
Q ss_pred c-ccCEEEccCCCCC-CCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCc
Q 005381 555 L-WVQMLDLSHNELR-SIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLS 631 (699)
Q Consensus 555 ~-~L~~LdLS~N~L~-~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll 631 (699)
+ .|+.|+|++|.++ .+|. +..+. |+.|++++|.+++. .+..+..+++|+.|+|++|.++..+. .+..++-+
T Consensus 173 ~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~~L 246 (313)
T 1ogq_A 173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLG----KVGLSKNL 246 (313)
T ss_dssp CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC-CGGGCCTTSCCSEEECCSSEECCBGG----GCCCCTTC
T ss_pred hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCc-CCHHHhcCCCCCEEECCCCceeeecC----cccccCCC
Confidence 7 9999999999995 6666 88887 99999999999875 45778899999999999999986532 23444445
Q ss_pred ccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC--CCccchHHHhhcCCcccccc
Q 005381 632 HSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI--VNEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 632 ~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l--~~~~~~~~~~~~l~~L~~LD 694 (699)
..+++++|.+.. ..|..+..+ +|+.|+|++|++ .+|.. ..+++|+.|+
T Consensus 247 ~~L~Ls~N~l~~----------~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-----~~l~~L~~l~ 297 (313)
T 1ogq_A 247 NGLDLRNNRIYG----------TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-----GNLQRFDVSA 297 (313)
T ss_dssp CEEECCSSCCEE----------CCCGGGGGCTTCCEEECCSSEEEEECCCS-----TTGGGSCGGG
T ss_pred CEEECcCCcccC----------cCChHHhcCcCCCEEECcCCcccccCCCC-----ccccccChHH
Confidence 556777777743 235678888 999999999999 33332 3456665543
No 59
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.33 E-value=3.5e-12 Score=146.98 Aligned_cols=165 Identities=20% Similarity=0.236 Sum_probs=128.9
Q ss_pred HHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCCcccCEEE
Q 005381 482 LELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKLLWVQMLD 561 (699)
Q Consensus 482 l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L~~L~~Ld 561 (699)
+..+..|+.|++++|.+ ..++ .+..+.+|+. |+|++|.++.++.+..|++|+.|+
T Consensus 39 ~~~L~~L~~L~l~~n~i-----------------~~l~-~l~~l~~L~~-------L~Ls~N~l~~~~~l~~l~~L~~L~ 93 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDI-----------------KSVQ-GIQYLPNVTK-------LFLNGNKLTDIKPLTNLKNLGWLF 93 (605)
T ss_dssp HHHHTTCCCCBCTTCCC-----------------CCCT-TGGGCTTCCE-------EECTTSCCCCCGGGGGCTTCCEEE
T ss_pred hhcCCCCCEEECcCCCC-----------------CCCh-HHccCCCCCE-------EEeeCCCCCCChhhccCCCCCEEE
Confidence 56788999999998872 1111 1233444444 999999999988899999999999
Q ss_pred ccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccccCCCCcc
Q 005381 562 LSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHG 641 (699)
Q Consensus 562 LS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l 641 (699)
|++|.|+.++.+..+++|+.|+|++|.|+.+ +.+..|++|+.|+|++|.|+.++ .+..++.+..+++++|.+
T Consensus 94 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~l~-----~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 94 LDENKIKDLSSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp CCSSCCCCCTTSTTCTTCCEEECTTSCCCCC---GGGGGCTTCSEEECCSSCCCCCG-----GGGSCTTCSEEECCSSCC
T ss_pred CcCCCCCCChhhccCCCCCEEEecCCCCCCC---ccccCCCccCEEECCCCccCCch-----hhcccCCCCEEECcCCcC
Confidence 9999999998899999999999999999886 56889999999999999999873 344455555567788877
Q ss_pred ceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCccccccC
Q 005381 642 QTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWLDG 695 (699)
Q Consensus 642 ~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~LD~ 695 (699)
..+ +. +..+ +|+.|+|++|.|.. +. .+..+++|+.||-
T Consensus 166 ~~~-----------~~-l~~l~~L~~L~Ls~N~i~~--l~--~l~~l~~L~~L~L 204 (605)
T 1m9s_A 166 SDI-----------VP-LAGLTKLQNLYLSKNHISD--LR--ALAGLKNLDVLEL 204 (605)
T ss_dssp CCC-----------GG-GTTCTTCCEEECCSSCCCB--CG--GGTTCTTCSEEEC
T ss_pred CCc-----------hh-hccCCCCCEEECcCCCCCC--Ch--HHccCCCCCEEEc
Confidence 432 22 7888 99999999999932 11 2466888887763
No 60
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=1.1e-12 Score=126.52 Aligned_cols=125 Identities=22% Similarity=0.323 Sum_probs=98.6
Q ss_pred eEEccCCCCCcccCCCCCc-ccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCC
Q 005381 537 CLQLKNLSLSRLGSFDKLL-WVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIG 615 (699)
Q Consensus 537 ~L~Ls~n~l~~l~~l~~L~-~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~ 615 (699)
.|++++|.++.++.+..+. +|+.|+|++|.|+.++.+..+++|+.|+|++|.|++++ +..+..+++|+.|+|++|.|+
T Consensus 23 ~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~i~ 101 (176)
T 1a9n_A 23 ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNNSLV 101 (176)
T ss_dssp EEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECCSCCCC
T ss_pred EEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC-cchhhcCCCCCEEECCCCcCC
Confidence 3999999999888777776 99999999999988866999999999999999999872 233588999999999999998
Q ss_pred CCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC-CCccchHHHhhcCCccccc
Q 005381 616 AHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI-VNEKFKSFLIKVLPGLKWL 693 (699)
Q Consensus 616 ~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~~~~~~~~~~~l~~L~~L 693 (699)
.+|. . ..+..+ +|+.|+|++|++ ..+.++..++..+|+|+.|
T Consensus 102 ~~~~--~----------------------------------~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 102 ELGD--L----------------------------------DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp CGGG--G----------------------------------GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEE
T ss_pred cchh--h----------------------------------HhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCcccee
Confidence 8751 0 134455 788888888888 4445545566778888888
Q ss_pred cCccC
Q 005381 694 DGEQL 698 (699)
Q Consensus 694 D~~~i 698 (699)
|....
T Consensus 146 d~~~n 150 (176)
T 1a9n_A 146 DFQKV 150 (176)
T ss_dssp TTEEC
T ss_pred CCCcC
Confidence 87543
No 61
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.33 E-value=7.4e-13 Score=141.27 Aligned_cols=134 Identities=20% Similarity=0.278 Sum_probs=101.5
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAH 617 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~l 617 (699)
+++++|.++.++.+..+++|+.|++++|.++.++.+..+++|+.|++++|.++.+ +.+..+++|+.|++++|.|+.+
T Consensus 204 L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~ 280 (347)
T 4fmz_A 204 FTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDI 280 (347)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCC
T ss_pred eecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCCC
Confidence 8888888887777888888999999999888887788888899999999988876 5577888899999999988887
Q ss_pred CcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCC-CccchHHHhhcCCcccccc
Q 005381 618 SIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIV-NEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 618 p~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~-~~~~~~~~~~~l~~L~~LD 694 (699)
+ . +..++-+..+++++|.+.. ..|..+..+ +|+.|+|++|++. .+. +..+++|+.||
T Consensus 281 ~--~---~~~l~~L~~L~L~~n~l~~----------~~~~~l~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~ 339 (347)
T 4fmz_A 281 S--V---LNNLSQLNSLFLNNNQLGN----------EDMEVIGGLTNLTTLFLSQNHITDIRP-----LASLSKMDSAD 339 (347)
T ss_dssp G--G---GGGCTTCSEEECCSSCCCG----------GGHHHHHTCTTCSEEECCSSSCCCCGG-----GGGCTTCSEES
T ss_pred h--h---hcCCCCCCEEECcCCcCCC----------cChhHhhccccCCEEEccCCccccccC-----hhhhhccceee
Confidence 4 2 2333334445666666532 234567788 9999999999993 221 46688888776
No 62
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.32 E-value=9.5e-11 Score=117.37 Aligned_cols=183 Identities=11% Similarity=0.010 Sum_probs=161.4
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC
Q 005381 25 RVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (699)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs 104 (699)
..+..........|++ ++|++.+.+++..+|++..+|...+.++...++ +++++..+++++..+|.+
T Consensus 38 ~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~a~~~~~~~ 104 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNT-EQAKVPLRKALEIDPSSADAHAALAVVFQTEME------------PKLADEEYRKALASDSRN 104 (252)
T ss_dssp HHHHHHHHHHHHTTCT-GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHCcCc
Confidence 3444444555667777 799999999999999999999999999988765 899999999999999999
Q ss_pred hHHHHHHHHHHHhCCCChHHHHHHHHHHHH--hCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHH
Q 005381 105 YGAWHHRKWILSKGHSSIDNELRLLDKFQK--ADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRS 182 (699)
Q Consensus 105 y~aW~hR~w~L~~~~~~~~~EL~~~~k~L~--~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~ 182 (699)
..+|...+.++... +.+++++++++++++ .+|.+..+|...+.+....+.+ +++++++.++++.+|.+..+|...+
T Consensus 105 ~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~la 182 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQ-KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP-AQAKEYFEKSLRLNRNQPSVALEMA 182 (252)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCcccHHHHHHHH
Confidence 99999999999877 699999999999999 8999999999999999999988 7899999999999999999999999
Q ss_pred HHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCc
Q 005381 183 LLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (699)
Q Consensus 183 ~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~ 234 (699)
.++...+. ++++++.+.+++..+|++..+|..+..++...
T Consensus 183 ~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (252)
T 2ho1_A 183 DLLYKERE------------YVPARQYYDLFAQGGGQNARSLLLGIRLAKVF 222 (252)
T ss_dssp HHHHHTTC------------HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCC------------HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc
Confidence 88877644 79999999999999999999988877776543
No 63
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.32 E-value=6.9e-13 Score=140.81 Aligned_cols=192 Identities=11% Similarity=0.046 Sum_probs=115.3
Q ss_pred CCcCCCcHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCC
Q 005381 472 ANKISHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSF 551 (699)
Q Consensus 472 ~~~~~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l 551 (699)
....+.....+..+++|++||+++|..... ......+..+.+++. |++++|.++.++..
T Consensus 131 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------~~~~~~~~~l~~L~~-------L~l~~n~l~~l~~~ 189 (330)
T 1xku_A 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSS--------------GIENGAFQGMKKLSY-------IRIADTNITTIPQG 189 (330)
T ss_dssp SCCCBBCHHHHTTCTTCCEEECCSSCCCGG--------------GBCTTGGGGCTTCCE-------EECCSSCCCSCCSS
T ss_pred CcccccCHhHhcCCccccEEECCCCcCCcc--------------CcChhhccCCCCcCE-------EECCCCccccCCcc
Confidence 333455667788889999999988873110 001111222333333 77888887776621
Q ss_pred CCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCC
Q 005381 552 DKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSP 629 (699)
Q Consensus 552 ~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ 629 (699)
. .++|+.|++++|.++.+++ +..+++|+.|+|++|.|+++. +..+..+++|+.|+|++|+|+.+|. .+..++
T Consensus 190 ~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~lp~----~l~~l~ 263 (330)
T 1xku_A 190 L-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNNKLVKVPG----GLADHK 263 (330)
T ss_dssp C-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSSCCSSCCT----TTTTCS
T ss_pred c-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-hhhccCCCCCCEEECCCCcCccCCh----hhccCC
Confidence 1 2678888888888876644 777888888888888877752 3457777788888888888877652 234444
Q ss_pred CcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCcccccc
Q 005381 630 LSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 630 ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~LD 694 (699)
.+..+++++|.++.+..+... .+...... .|+.|++++|++......+..+..++.++.||
T Consensus 264 ~L~~L~l~~N~i~~~~~~~f~----~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~ 325 (330)
T 1xku_A 264 YIQVVYLHNNNISAIGSNDFC----PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325 (330)
T ss_dssp SCCEEECCSSCCCCCCTTSSS----CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred CcCEEECCCCcCCccChhhcC----CcccccccccccceEeecCcccccccCccccccccceeEEE
Confidence 455567777777554432000 00111223 78888888888832222222334466666654
No 64
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.32 E-value=1e-12 Score=157.16 Aligned_cols=126 Identities=16% Similarity=0.157 Sum_probs=74.1
Q ss_pred CCCcHHHHHhcccccccCCCCCc-ccc-chhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccC--
Q 005381 475 ISHSEEVLELYNDLMRLDPTHVQ-YYK-DQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGS-- 550 (699)
Q Consensus 475 ~~~~~~~l~~l~~L~~LDls~n~-~~~-~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~-- 550 (699)
.+..+..+..+++|+.||+++|. +.. .++..+. . +...+..+.+++. |+|++|.++.+|.
T Consensus 504 ~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~--~-------L~~~~~~l~~L~~-------L~Ls~N~L~~ip~~~ 567 (876)
T 4ecn_A 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT--R-------LADDEDTGPKIQI-------FYMGYNNLEEFPASA 567 (876)
T ss_dssp CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH--H-------HHHCTTTTTTCCE-------EECCSSCCCBCCCHH
T ss_pred CccChHHHhCCCCCCEEECcCCCCcccccchHHHH--h-------hhhcccccCCccE-------EEeeCCcCCccCChh
Confidence 45666778888999999999886 332 2322110 0 0001111222222 6666666666654
Q ss_pred -CCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCcccccccc-ccccccccccCCCCC
Q 005381 551 -FDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKS-LRALNISYNEIGAHS 618 (699)
Q Consensus 551 -l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~-L~~L~Ls~N~I~~lp 618 (699)
+..+++|+.|+|++|.++.+|.|..+++|+.|+|++|.|+.+ |..+..+++ |+.|+|++|.|+.+|
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~l--p~~l~~l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEI--PEDFCAFTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCC--CTTSCEECTTCCEEECCSSCCCSCC
T ss_pred hhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccc--hHHHhhccccCCEEECcCCCCCcCc
Confidence 666666666666666666666666666666666666666644 445666666 666666666666554
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.32 E-value=2e-12 Score=138.68 Aligned_cols=142 Identities=19% Similarity=0.222 Sum_probs=84.7
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccc-
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYN- 612 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N- 612 (699)
|++++|.++.++ .+..+++|++|+|++|.++.++. |..+++|+.|++++|+++.++....+..+++|+.|++++|
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 81 LVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred EECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc
Confidence 777777777654 57777777777777777777665 6777777777777777776632235667777777777777
Q ss_pred cCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCccc
Q 005381 613 EIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLK 691 (699)
Q Consensus 613 ~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~ 691 (699)
.++.++. ..+..++.+..+++++|.+... .|..+..+ +|+.|++++|.+. .+.......+++|+
T Consensus 161 ~~~~~~~---~~~~~l~~L~~L~l~~n~l~~~----------~~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~L~ 225 (353)
T 2z80_A 161 TFTKIQR---KDFAGLTFLEELEIDASDLQSY----------EPKSLKSIQNVSHLILHMKQHI--LLLEIFVDVTSSVE 225 (353)
T ss_dssp SCCEECT---TTTTTCCEEEEEEEEETTCCEE----------CTTTTTTCSEEEEEEEECSCST--THHHHHHHHTTTEE
T ss_pred cccccCH---HHccCCCCCCEEECCCCCcCcc----------CHHHHhccccCCeecCCCCccc--cchhhhhhhccccc
Confidence 4665532 2223333333345555554332 13456666 6666666666662 22223334455555
Q ss_pred ccc
Q 005381 692 WLD 694 (699)
Q Consensus 692 ~LD 694 (699)
.||
T Consensus 226 ~L~ 228 (353)
T 2z80_A 226 CLE 228 (353)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 66
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.31 E-value=9.4e-11 Score=121.45 Aligned_cols=165 Identities=11% Similarity=-0.008 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~ 121 (699)
++|+..+.+++..+|++..+|...+.+....+ .+++++..+++++..+|++..+|...+.++... +.
T Consensus 142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~ 208 (330)
T 3hym_B 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN------------NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN-GE 208 (330)
T ss_dssp HHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT------------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-cc
Confidence 34444444444444444444444444444332 266666777777777777777777776666655 46
Q ss_pred hHHHHHHHHHHHHhC---------CCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhh
Q 005381 122 IDNELRLLDKFQKAD---------SRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (699)
Q Consensus 122 ~~~EL~~~~k~L~~d---------prN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~ 192 (699)
+++++.+++++++.. |.+..+|...+.+....|.+ +++++++.++++.+|.+..+|...+.++..++.
T Consensus 209 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-- 285 (330)
T 3hym_B 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY-AEALDYHRQALVLIPQNASTYSAIGYIHSLMGN-- 285 (330)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc--
Confidence 677777777777665 55556677777777666666 567777777777777777777777777666543
Q ss_pred ccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHc
Q 005381 193 VEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (699)
Q Consensus 193 ~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~ 232 (699)
++++++.+.+++..+|++..+|..+...+.
T Consensus 286 ----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 286 ----------FENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp ----------HHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 678888888888888888888887777664
No 67
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.31 E-value=1.1e-11 Score=116.17 Aligned_cols=138 Identities=5% Similarity=-0.099 Sum_probs=126.0
Q ss_pred CCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005381 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (699)
Q Consensus 37 ~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~ 116 (699)
.+++ ++|+..+.+++..+|++..+|...+.+....++ +++++..++++++.+|++..+|..++.++.
T Consensus 10 ~~~~-e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~------------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 10 KADV-ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE------------YDLAKKYICTYINVQERDPKAHRFLGLLYE 76 (150)
T ss_dssp HHHH-HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cChH-HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3444 799999999999999999999999999988865 999999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Q 005381 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNL 188 (699)
Q Consensus 117 ~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l 188 (699)
+. +.+++++..++++++++|.+..+|...+.++...+.+.+....|++++++.+|.|..+|.-|+.++...
T Consensus 77 ~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 77 LE-ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred Hc-CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 88 699999999999999999999999999999999999855555567999999999999999999887654
No 68
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.31 E-value=3.7e-13 Score=144.37 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=75.0
Q ss_pred EEccCCCCCcccC---CCCCcccCEEEccCC-CCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccc
Q 005381 538 LQLKNLSLSRLGS---FDKLLWVQMLDLSHN-ELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISY 611 (699)
Q Consensus 538 L~Ls~n~l~~l~~---l~~L~~L~~LdLS~N-~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~ 611 (699)
|++++|.++.++. +..+++|+.|++++| .++.+++ |..+++|+.|++++|.++++ .+..+..+++|+.|++++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTTTCSEEEEEEEEC
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc-CHHHHhccccCCeecCCC
Confidence 6666666655542 555666666666665 3454433 55566666666666665554 234455555555555555
Q ss_pred ccCCCCCcccccccCCCCCcccccCCCCccceee-----------------c---C-CcchhhhhhccCCCC-CccEEEe
Q 005381 612 NEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVI-----------------D---D-DIKSYWEAYFILKGL-NLTQFDI 669 (699)
Q Consensus 612 N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~-----------------~---~-~~~~~~~~p~~l~~L-~L~~LdL 669 (699)
|.++.+|..... .++.+..+++++|.+.... + . .++....+|..+..+ +|+.|+|
T Consensus 208 n~l~~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L 284 (353)
T 2z80_A 208 KQHILLLEIFVD---VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284 (353)
T ss_dssp SCSTTHHHHHHH---HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred Cccccchhhhhh---hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence 555544311110 1111122233333332110 0 0 222333456667777 7888888
Q ss_pred cCCCCCCccchHHHhhcCCcccccc
Q 005381 670 VGNAIVNEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 670 s~N~l~~~~~~~~~~~~l~~L~~LD 694 (699)
++|.|. .+...++..+++|+.||
T Consensus 285 s~N~l~--~i~~~~~~~l~~L~~L~ 307 (353)
T 2z80_A 285 SRNQLK--SVPDGIFDRLTSLQKIW 307 (353)
T ss_dssp CSSCCC--CCCTTTTTTCTTCCEEE
T ss_pred CCCCCC--ccCHHHHhcCCCCCEEE
Confidence 888772 11122234566666554
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.31 E-value=7.2e-13 Score=139.03 Aligned_cols=125 Identities=19% Similarity=0.199 Sum_probs=101.2
Q ss_pred CeEEccCCCCCccc--CCCCCcccCEEEccCCCCCC--CcC-CccccccceeecccCCCCCCCCCccccccccccccccc
Q 005381 536 MCLQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRS--IEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNIS 610 (699)
Q Consensus 536 ~~L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~--l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls 610 (699)
+.|++++|.++.+. .+..+++|+.|+|++|.++. +|. +..+++|+.|++++|.|+++ .+..+..+++|+.|+|+
T Consensus 129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECT
T ss_pred CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc-CHHHhcCCCCCCEEECC
Confidence 34999999998654 68899999999999999965 666 99999999999999999886 35778899999999999
Q ss_pred cccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC--CccEEEecCCCC
Q 005381 611 YNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL--NLTQFDIVGNAI 674 (699)
Q Consensus 611 ~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L--~L~~LdLs~N~l 674 (699)
+|.|+.++... +..++-+..+++++|.+.... |..+..+ +|+.|+|++|++
T Consensus 208 ~N~l~~~~~~~---~~~l~~L~~L~L~~N~l~~~~----------~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 208 HNNFFSLDTFP---YKCLNSLQVLDYSLNHIMTSK----------KQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TSCCSBCCSGG---GTTCTTCCEEECTTSCCCBCS----------SSSCCCCCTTCCEEECTTCCE
T ss_pred CCccCccChhh---ccCcccCCEeECCCCCCcccC----------HHHHHhhhccCCEEEccCCCe
Confidence 99999986322 344445555678888775432 3456665 799999999999
No 70
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.31 E-value=2.5e-10 Score=111.33 Aligned_cols=177 Identities=12% Similarity=0.043 Sum_probs=151.3
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 005381 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (699)
Q Consensus 31 ~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~h 110 (699)
.......|.+ ++|++.+.+++..+|++..+|...+.++...+. +++++..+++++..+|++..+|..
T Consensus 15 ~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 15 AMEYMRGQDY-RQATASIEDALKSDPKNELAWLVRAEIYQYLKV------------NDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHhCCCChHHHHH
Confidence 3344456776 799999999999999999999999998887765 899999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHH--hCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Q 005381 111 RKWILSKGHSSIDNELRLLDKFQK--ADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNL 188 (699)
Q Consensus 111 R~w~L~~~~~~~~~EL~~~~k~L~--~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l 188 (699)
.+.++....+.+++++++++++++ .+|.+..+|...+.+....+.+ ++.++++.++++.+|.+..+|...+.++...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF-GLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 999888651489999999999999 7777789999999999999988 6789999999999999999999999888776
Q ss_pred hhhhccCccchhchHHHHHHHHHHHHHhCC-CCchhHHHHHHHHcC
Q 005381 189 LKRKVEGFVSKEKVLPDEYEFVHQAIFTDP-DDQSGWFYHLWLLDQ 233 (699)
Q Consensus 189 ~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP-~d~SaW~Y~~~Ll~~ 233 (699)
+. ++++++.+.+++..+| .+..+|.....+...
T Consensus 161 ~~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (225)
T 2vq2_A 161 GQ------------LGDADYYFKKYQSRVEVLQADDLLLGWKIAKA 194 (225)
T ss_dssp TC------------HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred CC------------HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 44 7899999999999999 888888665555443
No 71
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.31 E-value=9.9e-13 Score=140.27 Aligned_cols=135 Identities=19% Similarity=0.210 Sum_probs=91.3
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAH 617 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~l 617 (699)
|++++|.++.++.+..+++|+.|++++|.++.++.+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.++.+
T Consensus 182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL---SPLANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCC
T ss_pred EEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCC---cchhcCCCCCEEECCCCccCCC
Confidence 7777777776666677777777777777776666677777777777777777765 2267777777777777777775
Q ss_pred CcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCcccccc
Q 005381 618 SIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 618 p~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~LD 694 (699)
+ .+..++-+..+++++|.+..+ ..+..+ +|+.|+|++|.+. ......+..+++|+.||
T Consensus 259 ~-----~~~~l~~L~~L~l~~n~l~~~------------~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 259 N-----AVKDLTKLKMLNVGSNQISDI------------SVLNNLSQLNSLFLNNNQLG--NEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp G-----GGTTCTTCCEEECCSSCCCCC------------GGGGGCTTCSEEECCSSCCC--GGGHHHHHTCTTCSEEE
T ss_pred h-----hHhcCCCcCEEEccCCccCCC------------hhhcCCCCCCEEECcCCcCC--CcChhHhhccccCCEEE
Confidence 3 233333344446666655332 246677 8999999999984 22334556788888776
No 72
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.31 E-value=9.8e-11 Score=116.77 Aligned_cols=181 Identities=14% Similarity=0.098 Sum_probs=158.5
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC---
Q 005381 28 QSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS--- 104 (699)
Q Consensus 28 ~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs--- 104 (699)
..........|.+ ++|+.++.+++..+ ++..+|..++.++...+. +++++..+++++..+|++
T Consensus 9 ~~~g~~~~~~~~~-~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~ 74 (258)
T 3uq3_A 9 KAEGNKFYKARQF-DEAIEHYNKAWELH-KDITYLNNRAAAEYEKGE------------YETAISTLNDAVEQGREMRAD 74 (258)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccH-HHHHHHHHHHHHhh-ccHHHHHHHHHHHHHccc------------HHHHHHHHHHHHHhCcccccc
Confidence 3334444567777 89999999999999 999999999999998865 899999999999999987
Q ss_pred ----hHHHHHHHHHHHhCCCChHHHHHHHHHHHH--------------------------hCCCChhhhhHHHHHHHhcC
Q 005381 105 ----YGAWHHRKWILSKGHSSIDNELRLLDKFQK--------------------------ADSRNFHAWNYRRFVAASMN 154 (699)
Q Consensus 105 ----y~aW~hR~w~L~~~~~~~~~EL~~~~k~L~--------------------------~dprN~haW~yR~~vl~~l~ 154 (699)
..+|...+.++... +.++++++.++++++ .+|.+..+|...+.+....+
T Consensus 75 ~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 75 YKVISKSFARIGNAYHKL-GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhc
Confidence 78999999999877 588999999999888 77788899999999999999
Q ss_pred CChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCc
Q 005381 155 RSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (699)
Q Consensus 155 ~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~ 234 (699)
.+ ++.+++++++++.+|.+..+|..++.++...+. ++++++.+.+++..+|++..+|+.+..++...
T Consensus 154 ~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 220 (258)
T 3uq3_A 154 DW-PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS------------FPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 220 (258)
T ss_dssp CH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CH-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 88 689999999999999999999999998887754 79999999999999999999999988887664
Q ss_pred CC
Q 005381 235 VR 236 (699)
Q Consensus 235 ~~ 236 (699)
.+
T Consensus 221 g~ 222 (258)
T 3uq3_A 221 KE 222 (258)
T ss_dssp TC
T ss_pred hh
Confidence 43
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.30 E-value=1.2e-12 Score=138.42 Aligned_cols=138 Identities=21% Similarity=0.153 Sum_probs=77.7
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--C-ccccccceeecccCCCCCCCCCccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--L-EALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYN 612 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l-~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N 612 (699)
|++++|.++.++ .+..+++|+.|+|++|.++.++. + ..+++|+.|+|++|.|+.+ .....+++|+.|+|++|
T Consensus 125 L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSN 201 (317)
T ss_dssp EECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEEECCSS
T ss_pred EECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc---ccccccccCCEEECCCC
Confidence 556666666543 45556666666666666655433 3 3556666666666666554 22334566666666666
Q ss_pred cCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCccc
Q 005381 613 EIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLK 691 (699)
Q Consensus 613 ~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~ 691 (699)
+|+.+|.. +..++-+..+++++|.+. .+|..+..+ +|+.|+|++|++... .....+..++.|+
T Consensus 202 ~l~~l~~~----~~~l~~L~~L~L~~N~l~-----------~l~~~~~~l~~L~~L~l~~N~~~~~-~~~~~~~~~~~L~ 265 (317)
T 3o53_A 202 KLAFMGPE----FQSAAGVTWISLRNNKLV-----------LIEKALRFSQNLEHFDLRGNGFHCG-TLRDFFSKNQRVQ 265 (317)
T ss_dssp CCCEECGG----GGGGTTCSEEECTTSCCC-----------EECTTCCCCTTCCEEECTTCCCBHH-HHHHHHHTCHHHH
T ss_pred cCCcchhh----hcccCcccEEECcCCccc-----------chhhHhhcCCCCCEEEccCCCccCc-CHHHHHhccccce
Confidence 66665421 222223333455555553 235567777 888888888888311 2233445566666
Q ss_pred ccc
Q 005381 692 WLD 694 (699)
Q Consensus 692 ~LD 694 (699)
.|+
T Consensus 266 ~l~ 268 (317)
T 3o53_A 266 TVA 268 (317)
T ss_dssp HHH
T ss_pred EEE
Confidence 554
No 74
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.30 E-value=4.5e-13 Score=141.68 Aligned_cols=177 Identities=17% Similarity=0.093 Sum_probs=128.5
Q ss_pred CCcHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCC-ccc-CCCC
Q 005381 476 SHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLS-RLG-SFDK 553 (699)
Q Consensus 476 ~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~-~l~-~l~~ 553 (699)
+..+..++.+++|++||+++|.+...+ +..+..+.+++. |++++|.++ .++ .+..
T Consensus 91 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~----------------p~~~~~l~~L~~-------L~Ls~N~l~~~~p~~~~~ 147 (313)
T 1ogq_A 91 GPIPPAIAKLTQLHYLYITHTNVSGAI----------------PDFLSQIKTLVT-------LDFSYNALSGTLPPSISS 147 (313)
T ss_dssp SCCCGGGGGCTTCSEEEEEEECCEEEC----------------CGGGGGCTTCCE-------EECCSSEEESCCCGGGGG
T ss_pred ccCChhHhcCCCCCEEECcCCeeCCcC----------------CHHHhCCCCCCE-------EeCCCCccCCcCChHHhc
Confidence 344556788899999999988733222 222333444444 999999998 455 7889
Q ss_pred CcccCEEEccCCCCC-CCcC-Ccccc-ccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCC
Q 005381 554 LLWVQMLDLSHNELR-SIEG-LEALQ-LLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPL 630 (699)
Q Consensus 554 L~~L~~LdLS~N~L~-~l~~-l~~L~-~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~l 630 (699)
+++|++|+|++|.++ .+|. +..++ +|+.|++++|.+++. .|..+..+. |+.|+|++|.++..+. ..+..++.
T Consensus 148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-~~~~~~~l~-L~~L~Ls~N~l~~~~~---~~~~~l~~ 222 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-IPPTFANLN-LAFVDLSRNMLEGDAS---VLFGSDKN 222 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-CCGGGGGCC-CSEEECCSSEEEECCG---GGCCTTSC
T ss_pred CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc-CChHHhCCc-ccEEECcCCcccCcCC---HHHhcCCC
Confidence 999999999999996 7777 88888 899999999999854 357777776 9999999999987642 33444445
Q ss_pred cccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC--CCccchHHHhhcCCccccccC
Q 005381 631 SHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI--VNEKFKSFLIKVLPGLKWLDG 695 (699)
Q Consensus 631 l~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l--~~~~~~~~~~~~l~~L~~LD~ 695 (699)
+..+++++|.+... +..+..+ +|+.|+|++|.| ..+. .+..+++|+.||=
T Consensus 223 L~~L~L~~N~l~~~-----------~~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~L 275 (313)
T 1ogq_A 223 TQKIHLAKNSLAFD-----------LGKVGLSKNLNGLDLRNNRIYGTLPQ----GLTQLKFLHSLNV 275 (313)
T ss_dssp CSEEECCSSEECCB-----------GGGCCCCTTCCEEECCSSCCEECCCG----GGGGCTTCCEEEC
T ss_pred CCEEECCCCceeee-----------cCcccccCCCCEEECcCCcccCcCCh----HHhcCcCCCEEEC
Confidence 55567777766432 2347778 999999999999 3222 2456888887763
No 75
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=2.7e-12 Score=120.01 Aligned_cols=122 Identities=30% Similarity=0.322 Sum_probs=100.7
Q ss_pred EEccCCCCC--ccc-CCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccC
Q 005381 538 LQLKNLSLS--RLG-SFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEI 614 (699)
Q Consensus 538 L~Ls~n~l~--~l~-~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I 614 (699)
|++++|.++ .++ .+..+++|+.|++++|.++.++.+..+++|+.|++++|.|++. .|..+..+++|+.|++++|.|
T Consensus 22 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~i 100 (149)
T 2je0_A 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNKI 100 (149)
T ss_dssp EECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSCC
T ss_pred EEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCcC
Confidence 999999998 676 6688999999999999998885599999999999999999884 345566789999999999999
Q ss_pred CCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC-CCccchHHHhhcCCcccc
Q 005381 615 GAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI-VNEKFKSFLIKVLPGLKW 692 (699)
Q Consensus 615 ~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~~~~~~~~~~~l~~L~~ 692 (699)
+.++. +..+..+ +|+.|++++|++ ..+.+....+..+++|+.
T Consensus 101 ~~~~~------------------------------------~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 101 KDLST------------------------------------IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp CSHHH------------------------------------HGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred CChHH------------------------------------HHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 87631 2356667 899999999999 444555567788999999
Q ss_pred ccCc
Q 005381 693 LDGE 696 (699)
Q Consensus 693 LD~~ 696 (699)
||..
T Consensus 145 L~l~ 148 (149)
T 2je0_A 145 LDGY 148 (149)
T ss_dssp ETTB
T ss_pred ccCC
Confidence 9864
No 76
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.30 E-value=3.3e-12 Score=142.55 Aligned_cols=80 Identities=25% Similarity=0.298 Sum_probs=41.0
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
|+|++|.++.+. .+..+++|+.|+|++|.++.+++ |..+++|+.|+|++|.++.++ +..+..+++|+.|+|++|.
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCc
Confidence 555555555432 44555555555555555544433 555555555555555555441 1334555555555555555
Q ss_pred CCCCC
Q 005381 614 IGAHS 618 (699)
Q Consensus 614 I~~lp 618 (699)
+..++
T Consensus 188 i~~~~ 192 (477)
T 2id5_A 188 INAIR 192 (477)
T ss_dssp CCEEC
T ss_pred CcEeC
Confidence 55443
No 77
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.29 E-value=2.2e-12 Score=133.05 Aligned_cols=132 Identities=23% Similarity=0.303 Sum_probs=108.3
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAH 617 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~l 617 (699)
|++++|.++.++.+..+++|+.|+|++|.|+.++++..+++|+.|+|++|+|++++ .+.. ++|+.|+|++|.|+.+
T Consensus 46 L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~---~~~~-~~L~~L~L~~N~l~~~ 121 (263)
T 1xeu_A 46 FNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLN---GIPS-ACLSRLFLDNNELRDT 121 (263)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCT---TCCC-SSCCEEECCSSCCSBS
T ss_pred EECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcC---cccc-CcccEEEccCCccCCC
Confidence 99999999999999999999999999999999988999999999999999999873 2334 8999999999999987
Q ss_pred CcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCcccccc
Q 005381 618 SIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 618 p~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~LD 694 (699)
+ .+..++-+..+++++|.+..+ ..+..+ +|+.|+|++|.|... ..+..+++|+.||
T Consensus 122 ~-----~l~~l~~L~~L~Ls~N~i~~~------------~~l~~l~~L~~L~L~~N~i~~~----~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 122 D-----SLIHLKNLEILSIRNNKLKSI------------VMLGFLSKLEVLDLHGNEITNT----GGLTRLKKVNWID 178 (263)
T ss_dssp G-----GGTTCTTCCEEECTTSCCCBC------------GGGGGCTTCCEEECTTSCCCBC----TTSTTCCCCCEEE
T ss_pred h-----hhcCcccccEEECCCCcCCCC------------hHHccCCCCCEEECCCCcCcch----HHhccCCCCCEEe
Confidence 4 245555556668888877542 257778 999999999999322 2245678888775
No 78
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.29 E-value=9.4e-13 Score=140.02 Aligned_cols=187 Identities=14% Similarity=0.065 Sum_probs=114.1
Q ss_pred CCCcHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCC
Q 005381 475 ISHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKL 554 (699)
Q Consensus 475 ~~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L 554 (699)
.......+..+++|+.||+++|.... ....+.. +..+ .|.. |++++|.++.++.- ..
T Consensus 136 ~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~---~~~l---~L~~--L~l~~n~l~~l~~~-~~ 192 (332)
T 2ft3_A 136 RKVPKGVFSGLRNMNCIEMGGNPLEN--------------SGFEPGA---FDGL---KLNY--LRISEAKLTGIPKD-LP 192 (332)
T ss_dssp CCCCSGGGSSCSSCCEEECCSCCCBG--------------GGSCTTS---SCSC---CCSC--CBCCSSBCSSCCSS-SC
T ss_pred CccCHhHhCCCccCCEEECCCCcccc--------------CCCCccc---ccCC---ccCE--EECcCCCCCccCcc-cc
Confidence 34445556777888888888776210 0000111 1111 2333 77888888877621 12
Q ss_pred cccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcc
Q 005381 555 LWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSH 632 (699)
Q Consensus 555 ~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ 632 (699)
++|+.|++++|.++.++. +..+++|+.|+|++|.|+++. +..+..+++|+.|+|++|+|+.+|. .+..++.+.
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~lp~----~l~~l~~L~ 267 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNNKLSRVPA----GLPDLKLLQ 267 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-TTGGGGCTTCCEEECCSSCCCBCCT----TGGGCTTCC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-hhHhhCCCCCCEEECCCCcCeecCh----hhhcCccCC
Confidence 678888888888877764 888888888888888888763 3467778888888888888887763 234444455
Q ss_pred cccCCCCccceeecCCcchhhhhhccC-CCC-CccEEEecCCCCCCccchHHHhhcCCcccccc
Q 005381 633 SVGSEWNHGQTVIDDDIKSYWEAYFIL-KGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 633 ll~l~~N~l~~~~~~~~~~~~~~p~~l-~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~LD 694 (699)
.+++++|.++.+..+.. .. ..+ ... .|+.|++++|++.........+..+++|+.|+
T Consensus 268 ~L~l~~N~l~~~~~~~~---~~--~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~ 326 (332)
T 2ft3_A 268 VVYLHTNNITKVGVNDF---CP--VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326 (332)
T ss_dssp EEECCSSCCCBCCTTSS---SC--SSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred EEECCCCCCCccChhHc---cc--cccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence 56777777765433200 00 011 113 68899999998842223333445677777665
No 79
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.29 E-value=7.7e-11 Score=119.28 Aligned_cols=177 Identities=12% Similarity=0.045 Sum_probs=155.1
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChH---
Q 005381 30 QFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG--- 106 (699)
Q Consensus 30 ~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~--- 106 (699)
........|.+ ++|+..+.+++..+|++..+|..++.+....+. +++++..+++++. .|.+..
T Consensus 9 ~a~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~a~~-~~~~~~~~~ 74 (272)
T 3u4t_A 9 YADFLFKNNNY-AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAK------------YDLAQKDIETYFS-KVNATKAKS 74 (272)
T ss_dssp HHHHHHTTTCH-HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTC------------HHHHHHHHHHHHT-TSCTTTCCH
T ss_pred HHHHHHHhcCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh------------HHHHHHHHHHHHh-ccCchhHHH
Confidence 33444567777 799999999999999999999999999888865 8999999999999 554444
Q ss_pred -HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHH-HH
Q 005381 107 -AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRS-LL 184 (699)
Q Consensus 107 -aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~-~l 184 (699)
+|..++.++... +.++++++.++++++.+|.+..+|...+.+....|.+ ++++++++++++.+|.+..+|.+++ .+
T Consensus 75 ~~~~~lg~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~ 152 (272)
T 3u4t_A 75 ADFEYYGKILMKK-GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNF-PLAIQYMEKQIRPTTTDPKVFYELGQAY 152 (272)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH-HHHHHHHGGGCCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCH-HHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 499999999887 6999999999999999999999999999999999998 7899999999999999999999999 54
Q ss_pred HHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcC
Q 005381 185 LSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTV 235 (699)
Q Consensus 185 l~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~ 235 (699)
.... .++++++.+.+++..+|++..+|+++..++....
T Consensus 153 ~~~~-------------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 190 (272)
T 3u4t_A 153 YYNK-------------EYVKADSSFVKVLELKPNIYIGYLWRARANAAQD 190 (272)
T ss_dssp HHTT-------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred HHHH-------------HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence 4332 3799999999999999999999999888776543
No 80
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=5.3e-12 Score=120.49 Aligned_cols=122 Identities=27% Similarity=0.305 Sum_probs=95.1
Q ss_pred EEccCCCCC--ccc-CCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccC
Q 005381 538 LQLKNLSLS--RLG-SFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEI 614 (699)
Q Consensus 538 L~Ls~n~l~--~l~-~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I 614 (699)
|++++|.++ .++ .+..+++|+.|+|++|.++.++.+..+++|+.|+|++|.|++. .+..+..+++|+.|+|++|.|
T Consensus 29 L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l 107 (168)
T 2ell_A 29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNKL 107 (168)
T ss_dssp EECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSSC
T ss_pred EECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCcc
Confidence 999999998 777 5689999999999999998885599999999999999999884 345566799999999999999
Q ss_pred CCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC-CCccchHHHhhcCCcccc
Q 005381 615 GAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI-VNEKFKSFLIKVLPGLKW 692 (699)
Q Consensus 615 ~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~~~~~~~~~~~l~~L~~ 692 (699)
+.+|. +..+..+ +|+.|+|++|++ ..+.+....+..+++|+.
T Consensus 108 ~~~~~------------------------------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 108 KDIST------------------------------------LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp CSSGG------------------------------------GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred Ccchh------------------------------------HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 98751 1234555 677777777777 434444445666777777
Q ss_pred ccCc
Q 005381 693 LDGE 696 (699)
Q Consensus 693 LD~~ 696 (699)
||..
T Consensus 152 L~l~ 155 (168)
T 2ell_A 152 LDGY 155 (168)
T ss_dssp ETTE
T ss_pred ecCC
Confidence 7653
No 81
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.29 E-value=6.1e-12 Score=126.15 Aligned_cols=139 Identities=16% Similarity=0.162 Sum_probs=109.6
Q ss_pred EEccCCCCCcccC-CCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccC
Q 005381 538 LQLKNLSLSRLGS-FDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEI 614 (699)
Q Consensus 538 L~Ls~n~l~~l~~-l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I 614 (699)
++++++.++.+|. +. ++|+.|+|++|.|+.++. |..+++|+.|+|++|+|+.+ .+..|..+++|+.|+|++|.|
T Consensus 16 v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcC
Confidence 8999999998883 32 789999999999998886 99999999999999999987 457899999999999999999
Q ss_pred CCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCccccc
Q 005381 615 GAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWL 693 (699)
Q Consensus 615 ~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~L 693 (699)
+.+|...+ ..++-+..+++++|.+..+. |..|..+ +|+.|+|++|.|. .+....+..+++|+.|
T Consensus 93 ~~l~~~~f---~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 93 TELPKSLF---EGLFSLQLLLLNANKINCLR----------VDAFQDLHNLNLLSLYDNKLQ--TIAKGTFSPLRAIQTM 157 (220)
T ss_dssp CCCCTTTT---TTCTTCCEEECCSSCCCCCC----------TTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEE
T ss_pred CccCHhHc---cCCCCCCEEECCCCCCCEeC----------HHHcCCCCCCCEEECCCCcCC--EECHHHHhCCCCCCEE
Confidence 99974333 33444555677888875543 4578889 9999999999992 1111223557777765
Q ss_pred c
Q 005381 694 D 694 (699)
Q Consensus 694 D 694 (699)
|
T Consensus 158 ~ 158 (220)
T 2v9t_B 158 H 158 (220)
T ss_dssp E
T ss_pred E
Confidence 4
No 82
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.29 E-value=4.5e-13 Score=155.58 Aligned_cols=125 Identities=11% Similarity=0.098 Sum_probs=67.4
Q ss_pred CCCcHHHHHhcccccccCCCCCc-ccc-chhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccC--
Q 005381 475 ISHSEEVLELYNDLMRLDPTHVQ-YYK-DQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGS-- 550 (699)
Q Consensus 475 ~~~~~~~l~~l~~L~~LDls~n~-~~~-~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~-- 550 (699)
.+..++.++.+++|++||+++|. +.+ .++..+. .+. ....+.+++. |++++|.++.++.
T Consensus 262 ~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~--~L~--------~~~~l~~L~~-------L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ--ALA--------DAPVGEKIQI-------IYIGYNNLKTFPVET 324 (636)
T ss_dssp CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH--HHH--------HSGGGGTCCE-------EECCSSCCSSCCCHH
T ss_pred CccChHHHhcCCCCCEEECcCCCCCccccchHHHH--hhh--------ccccCCCCCE-------EECCCCcCCccCchh
Confidence 35556677788888888888886 332 2322110 000 0001122222 5666666655553
Q ss_pred -CCCCcccCEEEccCCCCC-CCcCCccccccceeecccCCCCCCCCCcccccccc-ccccccccccCCCCC
Q 005381 551 -FDKLLWVQMLDLSHNELR-SIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKS-LRALNISYNEIGAHS 618 (699)
Q Consensus 551 -l~~L~~L~~LdLS~N~L~-~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~-L~~L~Ls~N~I~~lp 618 (699)
+..+++|+.|++++|.++ .+|.+..+++|+.|+|++|.++.+ |..+..+++ |+.|++++|.|+.+|
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~l--p~~l~~l~~~L~~L~Ls~N~l~~lp 393 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEI--PANFCGFTEQVENLSFAHNKLKYIP 393 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEEC--CTTSEEECTTCCEEECCSSCCSSCC
T ss_pred hhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccc--cHhhhhhcccCcEEEccCCcCcccc
Confidence 555666666666666664 555555555666666666665543 344555555 666666666665554
No 83
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.29 E-value=1.8e-10 Score=120.40 Aligned_cols=181 Identities=11% Similarity=0.009 Sum_probs=152.1
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChH
Q 005381 27 LQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG 106 (699)
Q Consensus 27 ~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~ 106 (699)
+..........|++ ++|+..+.+++..+|++..+|..++.++...+. +++++..+++++..+|.+..
T Consensus 6 ~~~~~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~ 72 (359)
T 3ieg_A 6 HLELGKKLLAAGQL-ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK------------SKAALPDLTKVIALKMDFTA 72 (359)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCcch
Confidence 33444455667777 799999999999999999999999999888865 88999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCC---CChhhhhHH------------HHHHHhcCCChHHHHHHHHHHHHhc
Q 005381 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADS---RNFHAWNYR------------RFVAASMNRSEEDELKYTEDMICNN 171 (699)
Q Consensus 107 aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dp---rN~haW~yR------------~~vl~~l~~~~e~EL~~~~~~I~~n 171 (699)
+|...+.++... +.++++++.++++++.+| .+..+|... +.+....+.+ ++.+++++++++.+
T Consensus 73 ~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 73 ARLQRGHLLLKQ-GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY-TAAITFLDKILEVC 150 (359)
T ss_dssp HHHHHHHHHHHH-TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc-CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhC
Confidence 999999988877 589999999999999999 888888776 4566667777 67889999999999
Q ss_pred cCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCc
Q 005381 172 FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (699)
Q Consensus 172 ~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~ 234 (699)
|.+..+|..++.++..++. ++++++.+.+++..+|++..+|+.+..++...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGE------------PRKAISDLKAASKLKSDNTEAFYKISTLYYQL 201 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 9999999999888877754 78899999999999999999988877777553
No 84
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.28 E-value=7.5e-12 Score=125.48 Aligned_cols=124 Identities=23% Similarity=0.252 Sum_probs=103.5
Q ss_pred eEEccCCCCCccc---CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccc
Q 005381 537 CLQLKNLSLSRLG---SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISY 611 (699)
Q Consensus 537 ~L~Ls~n~l~~l~---~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~ 611 (699)
.|+|++|.++.++ .|..+++|+.|+|++|.|+.+++ |..+++|+.|+|++|.|+++. +..|..+++|+.|+|++
T Consensus 36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ-HKMFKGLESLKTLMLRS 114 (220)
T ss_dssp EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-GGGGTTCSSCCEEECTT
T ss_pred EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC-HhHhcCCcCCCEEECCC
Confidence 3999999999874 48899999999999999988876 999999999999999999873 45688999999999999
Q ss_pred ccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 612 NEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 612 N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
|+|+.++.. .+..++.+..+++++|.+..+. |..|..+ +|+.|+|++|++
T Consensus 115 N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 115 NRITCVGND---SFIGLSSVRLLSLYDNQITTVA----------PGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SCCCCBCTT---SSTTCTTCSEEECTTSCCCCBC----------TTTTTTCTTCCEEECCSCCE
T ss_pred CcCCeECHh---HcCCCccCCEEECCCCcCCEEC----------HHHhcCCCCCCEEEecCcCC
Confidence 999998533 3344444555677888775532 4678889 999999999999
No 85
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.28 E-value=1.5e-11 Score=121.63 Aligned_cols=124 Identities=25% Similarity=0.248 Sum_probs=100.8
Q ss_pred eEEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccc
Q 005381 537 CLQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYN 612 (699)
Q Consensus 537 ~L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N 612 (699)
.|++++|.++.++ .+..+++|++|+|++|.++.++. |..+++|+.|+|++|.|+.++ +..+..+++|+.|+|++|
T Consensus 32 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP-NGVFDKLTQLKELALNTN 110 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC-HhHhcCccCCCEEEcCCC
Confidence 3999999999877 47899999999999999998887 789999999999999999873 355788999999999999
Q ss_pred cCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 613 EIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 613 ~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
.|+.++... +..++.+..+++++|.+..+. +..+..+ +|+.|+|++|++
T Consensus 111 ~l~~~~~~~---~~~l~~L~~L~l~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 111 QLQSLPDGV---FDKLTQLKDLRLYQNQLKSVP----------DGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCCCCCTTT---TTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSCCB
T ss_pred cCcccCHhH---hccCCcCCEEECCCCccceeC----------HHHhccCCCccEEEecCCCe
Confidence 999886322 334444555577777765332 2357888 999999999998
No 86
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=1.5e-12 Score=140.50 Aligned_cols=126 Identities=22% Similarity=0.219 Sum_probs=96.1
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
|+|++|.|+.++ .|..+++|+.|+|++|.|+.++. |..+++|+.|+|++|+|+.+ .+..|..+++|+.|+|++|+
T Consensus 69 L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 69 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV-DRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEE-CHHHhCCcccCCEEECCCCc
Confidence 999999999776 68899999999999999988876 88999999999999999886 34678889999999999999
Q ss_pred CCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-C--ccEEEecCCCC
Q 005381 614 IGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-N--LTQFDIVGNAI 674 (699)
Q Consensus 614 I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~--L~~LdLs~N~l 674 (699)
|+.+|...+..+..++.+..+++++|.+..+.. ..+..+ . |+.|+|++|++
T Consensus 148 l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----------~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 148 ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL----------TDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCSCCGGGTC----CTTCCEEECCSSCCCCCCH----------HHHHHSCHHHHTTEECCSSCE
T ss_pred CCeeCHHHhcCcccCCcCCEEECCCCCCCccCH----------HHhhhccHhhcceEEecCCCc
Confidence 999875444333445555556778887765432 233334 3 57889999998
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.27 E-value=2.3e-12 Score=126.72 Aligned_cols=149 Identities=19% Similarity=0.223 Sum_probs=99.3
Q ss_pred HhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCCcccCEEEc
Q 005381 483 ELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKLLWVQMLDL 562 (699)
Q Consensus 483 ~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L~~L~~LdL 562 (699)
+.+..|+.|++++|.+. + ++ .+..+.+++. |++++|.++.++.+..+++|++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~----------------l~-~l~~l~~L~~-------L~l~~n~~~~~~~l~~l~~L~~L~l 95 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-D----------------LT-GIEYAHNIKD-------LTINNIHATNYNPISGLSNLERLRI 95 (197)
T ss_dssp HHHHTCCEEEEESSCCS-C----------------CT-TGGGCTTCSE-------EEEESCCCSCCGGGTTCTTCCEEEE
T ss_pred hhcCCccEEeccCCCcc-C----------------hH-HHhcCCCCCE-------EEccCCCCCcchhhhcCCCCCEEEe
Confidence 56778888888887621 1 11 2223334333 8888888888888888889999999
Q ss_pred cCCCCCC-CcC-CccccccceeecccCCCCCCCCCcccccccccccccccccc-CCCCCcccccccCCCCCcccccCCCC
Q 005381 563 SHNELRS-IEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE-IGAHSIDTTKYLCSSPLSHSVGSEWN 639 (699)
Q Consensus 563 S~N~L~~-l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~-I~~lp~~~~~~l~~l~ll~ll~l~~N 639 (699)
++|.++. .+. +..+++|+.|++++|.++.. .+..++.+++|+.|+|++|. ++.+| . +..++-+..+++++|
T Consensus 96 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~~--~---l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDIM--P---LKTLPELKSLNIQFD 169 (197)
T ss_dssp ECTTCBGGGSCCCTTCTTCCEEECCSSBCBGG-GHHHHTTCSSCCEEECCSCTBCCCCG--G---GGGCSSCCEEECTTB
T ss_pred ECCccCcccChhhcCCCCCCEEEecCCccCcH-hHHHHhhCCCCCEEEccCCCCccccH--h---hcCCCCCCEEECCCC
Confidence 9998865 344 88888999999999988763 24667888889999999887 77764 1 223333333455555
Q ss_pred ccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 640 HGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 640 ~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
.+..+ ..+..+ +|+.|++++|+|
T Consensus 170 ~i~~~------------~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 170 GVHDY------------RGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCCCC------------TTGGGCSSCCEEEECBC--
T ss_pred CCcCh------------HHhccCCCCCEEEeeCccc
Confidence 54321 144555 677777777766
No 88
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.27 E-value=6.8e-12 Score=133.10 Aligned_cols=136 Identities=16% Similarity=0.200 Sum_probs=83.8
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCC---CcC-CccccccceeecccCCCCCCCCCcccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRS---IEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISY 611 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~---l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~ 611 (699)
|++++|.++.++ .+..+++|+.|++++|.++. .+. +..+++|+.|++++|.++.++ ..+. ++|+.|++++
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~--~~L~~L~l~~ 201 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP--QGLP--PSLTELHLDG 201 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC--SSCC--TTCSEEECTT
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC--cccc--ccCCEEECCC
Confidence 667777766655 46667777777777777642 223 666777777777777776652 2222 5677777777
Q ss_pred ccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC-CCccchHHHhhcCCc
Q 005381 612 NEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI-VNEKFKSFLIKVLPG 689 (699)
Q Consensus 612 N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~~~~~~~~~~~l~~ 689 (699)
|.|+.++. ..+..++.+..+++++|.+.... +..+..+ +|+.|+|++|.| ..+. .+..+++
T Consensus 202 n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~----------~~~~~~l~~L~~L~L~~N~l~~lp~----~l~~l~~ 264 (330)
T 1xku_A 202 NKITKVDA---ASLKGLNNLAKLGLSFNSISAVD----------NGSLANTPHLRELHLNNNKLVKVPG----GLADHKY 264 (330)
T ss_dssp SCCCEECT---GGGTTCTTCCEEECCSSCCCEEC----------TTTGGGSTTCCEEECCSSCCSSCCT----TTTTCSS
T ss_pred CcCCccCH---HHhcCCCCCCEEECCCCcCceeC----------hhhccCCCCCCEEECCCCcCccCCh----hhccCCC
Confidence 77766532 22333444444566666664432 2356777 899999999988 3222 1345777
Q ss_pred ccccc
Q 005381 690 LKWLD 694 (699)
Q Consensus 690 L~~LD 694 (699)
|+.||
T Consensus 265 L~~L~ 269 (330)
T 1xku_A 265 IQVVY 269 (330)
T ss_dssp CCEEE
T ss_pred cCEEE
Confidence 77765
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.27 E-value=2.1e-12 Score=145.12 Aligned_cols=138 Identities=21% Similarity=0.162 Sum_probs=67.8
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--Cc-cccccceeecccCCCCCCCCCccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LE-ALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYN 612 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~-~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N 612 (699)
|+|++|.++.++ .+..+++|+.|+|++|.++.+++ +. .+++|+.|+|++|.|+++ ..+..+++|+.|+|++|
T Consensus 125 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~---~~~~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSN 201 (487)
T ss_dssp EECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEEECCSS
T ss_pred EECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc---cccccCCCCCEEECCCC
Confidence 555555555432 44455555555555555543322 32 455555555555555544 22233555555555555
Q ss_pred cCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCccc
Q 005381 613 EIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLK 691 (699)
Q Consensus 613 ~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~ 691 (699)
.|+.+|.. +..++.+..+++++|.+.. +|..+..+ +|+.|+|++|++.... ....+..++.|+
T Consensus 202 ~l~~~~~~----~~~l~~L~~L~Ls~N~l~~-----------lp~~l~~l~~L~~L~l~~N~l~c~~-~~~~~~~l~~L~ 265 (487)
T 3oja_A 202 KLAFMGPE----FQSAAGVTWISLRNNKLVL-----------IEKALRFSQNLEHFDLRGNGFHCGT-LRDFFSKNQRVQ 265 (487)
T ss_dssp CCCEECGG----GGGGTTCSEEECTTSCCCE-----------ECTTCCCCTTCCEEECTTCCBCHHH-HHHHHTTCHHHH
T ss_pred CCCCCCHh----HcCCCCccEEEecCCcCcc-----------cchhhccCCCCCEEEcCCCCCcCcc-hHHHHHhCCCCc
Confidence 55554321 2222222333444444432 34556666 7777777777773111 223344555555
Q ss_pred ccc
Q 005381 692 WLD 694 (699)
Q Consensus 692 ~LD 694 (699)
.|+
T Consensus 266 ~l~ 268 (487)
T 3oja_A 266 TVA 268 (487)
T ss_dssp HHH
T ss_pred EEe
Confidence 544
No 90
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=6.4e-12 Score=123.48 Aligned_cols=99 Identities=24% Similarity=0.324 Sum_probs=67.6
Q ss_pred EEccCCCCCccc-CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccC
Q 005381 538 LQLKNLSLSRLG-SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEI 614 (699)
Q Consensus 538 L~Ls~n~l~~l~-~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I 614 (699)
|+|++|.++.++ .+..+++|+.|+|++|.|+.+++ |.++++|+.|+|++|+|+.+. +..|..+++|+.|+|++|.|
T Consensus 36 L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~L~~N~l 114 (193)
T 2wfh_A 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLLSLHGNDI 114 (193)
T ss_dssp EECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEEECCCCCC
Confidence 666777766665 66666677777777777766654 666777777777777766652 34566666777777777766
Q ss_pred CCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 615 GAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 615 ~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
+.+|. ..|..+ +|+.|+|++|++
T Consensus 115 ~~~~~-------------------------------------~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 115 SVVPE-------------------------------------GAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCT-------------------------------------TTTTTCTTCCEEECCSSCE
T ss_pred CeeCh-------------------------------------hhhhcCccccEEEeCCCCe
Confidence 66541 246667 899999999998
No 91
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.27 E-value=6.6e-12 Score=144.57 Aligned_cols=33 Identities=33% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCC
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSI 570 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l 570 (699)
|+|++|.++.++ .+..+++|+.|+|++|.++.+
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 666666666554 466666666666666666544
No 92
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.27 E-value=1.4e-10 Score=123.32 Aligned_cols=186 Identities=13% Similarity=0.074 Sum_probs=158.7
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCC----------CCch----------------------h
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND----------SDPD----------------------S 82 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~----------~~~~----------------------~ 82 (699)
...|.+ ++|+..+.+++.++|++..+|...+.++...++..+ ..|+ .
T Consensus 110 ~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~ 188 (365)
T 4eqf_A 110 AENENE-QAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV 188 (365)
T ss_dssp HHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------
T ss_pred HHCCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHh
Confidence 445666 799999999999999999999999998877653110 0111 1
Q ss_pred hhhhHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHH
Q 005381 83 LKSILDEELRVVESALRQNFK--SYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDE 160 (699)
Q Consensus 83 ~~~~~~eEL~~~~~~L~~nPK--sy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~E 160 (699)
....+++++..+++++..+|+ +..+|...+.++... +.+++++++++++++.+|.+..+|...+.+....|.+ ++.
T Consensus 189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A 266 (365)
T 4eqf_A 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS-GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS-EEA 266 (365)
T ss_dssp CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHH
T ss_pred hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHH
Confidence 124578899999999999999 899999999999877 6999999999999999999999999999999999998 789
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCC------------CchhHHHHH
Q 005381 161 LKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD------------DQSGWFYHL 228 (699)
Q Consensus 161 L~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~------------d~SaW~Y~~ 228 (699)
++++.++++.+|.+..+|..++.++..+++ ++++++.+.+++..+|+ +..+|..++
T Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~ 334 (365)
T 4eqf_A 267 VEAYTRALEIQPGFIRSRYNLGISCINLGA------------YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALR 334 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------------CHHHHHHHHHHHHHHHCC------------CHHHHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHH
Confidence 999999999999999999999999988855 79999999999999998 477899988
Q ss_pred HHHcCcC
Q 005381 229 WLLDQTV 235 (699)
Q Consensus 229 ~Ll~~~~ 235 (699)
..+....
T Consensus 335 ~~~~~~g 341 (365)
T 4eqf_A 335 IALSLMD 341 (365)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 8776544
No 93
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.26 E-value=4.8e-10 Score=118.50 Aligned_cols=176 Identities=10% Similarity=0.018 Sum_probs=135.1
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w 113 (699)
....|.+ ++|+..+.+++..+|++..+|..++.++...+. +++++..+++++..+|++..+|...+.
T Consensus 74 ~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~l~~ 140 (368)
T 1fch_A 74 RLQEGDL-PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ------------ELLAISALRRCLELKPDNQTALMALAV 140 (368)
T ss_dssp HHHTTCH-HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC------------HHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3445555 688888888888888888888888888777754 778888888888888888888888887
Q ss_pred HHHhCCCChHHHHHHH-------------------------------------------------HHHHHhCCC--Chhh
Q 005381 114 ILSKGHSSIDNELRLL-------------------------------------------------DKFQKADSR--NFHA 142 (699)
Q Consensus 114 ~L~~~~~~~~~EL~~~-------------------------------------------------~k~L~~dpr--N~ha 142 (699)
++... +.++++++.+ +++++.+|. +..+
T Consensus 141 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 141 SFTNE-SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 77655 3555555544 455555555 5566
Q ss_pred hhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCch
Q 005381 143 WNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS 222 (699)
Q Consensus 143 W~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~S 222 (699)
|...+.+....|.+ ++.++++.++++.+|.+..+|..++.++...+. ++++++.+.+++..+|++..
T Consensus 220 ~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~ 286 (368)
T 1fch_A 220 QCGLGVLFNLSGEY-DKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ------------SEEAVAAYRRALELQPGYIR 286 (368)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCcHH
Confidence 66677777777777 678888889999999888888888888777644 79999999999999999999
Q ss_pred hHHHHHHHHcCcCC
Q 005381 223 GWFYHLWLLDQTVR 236 (699)
Q Consensus 223 aW~Y~~~Ll~~~~~ 236 (699)
+|+.+..++....+
T Consensus 287 ~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 287 SRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCC
Confidence 99988888765443
No 94
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.26 E-value=4.2e-12 Score=147.39 Aligned_cols=175 Identities=18% Similarity=0.136 Sum_probs=101.4
Q ss_pred HHHhcccccccCCCCCccccchhhhHHhhhh------ccchHHHhhhhccCCC-CCCCCCCCCeEEccCCCCCccc-CCC
Q 005381 481 VLELYNDLMRLDPTHVQYYKDQHSLVLLQQV------TSNWESLLSRCFHYSN-SPSNRGSPMCLQLKNLSLSRLG-SFD 552 (699)
Q Consensus 481 ~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l------~~~~~~l~~~~~~l~~-l~~l~L~~~~L~Ls~n~l~~l~-~l~ 552 (699)
.++.+++|++||+++|.+.+.++....+.++ .+.+..++..+..+.. ++. |++++|.++.++ .+.
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~-------L~Ls~N~l~~lp~~~~ 397 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN-------LSFAHNKLKYIPNIFD 397 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCE-------EECCSSCCSSCCSCCC
T ss_pred hhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcE-------EEccCCcCcccchhhh
Confidence 6777777777777777654333311000000 0011122333333333 333 888888888777 444
Q ss_pred CC--cccCEEEccCCCCCC-CcC-Cc-------cccccceeecccCCCCCCCCCccccccccccccccccccCCCCCccc
Q 005381 553 KL--LWVQMLDLSHNELRS-IEG-LE-------ALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDT 621 (699)
Q Consensus 553 ~L--~~L~~LdLS~N~L~~-l~~-l~-------~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~ 621 (699)
.+ ++|+.|++++|.++. +|. +. .+++|+.|+|++|.|+.++ ...+..+++|+.|+|++|+|+.+|...
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp-~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 476 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP-KELFSTGSPLSSINLMGNMLTEIPKNS 476 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC-THHHHTTCCCSEEECCSSCCSBCCSSS
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCC-HHHHccCCCCCEEECCCCCCCCcCHHH
Confidence 43 378888888888854 444 66 7778888899998888762 233556788889999999888877433
Q ss_pred ccccC----CCCCcccccCCCCccceeecCCcchhhhhhccCC--CC-CccEEEecCCCC
Q 005381 622 TKYLC----SSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILK--GL-NLTQFDIVGNAI 674 (699)
Q Consensus 622 ~~~l~----~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~--~L-~L~~LdLs~N~l 674 (699)
+.... .++.+..+++++|.+.. +|..+. .+ +|+.|+|++|.|
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------lp~~~~~~~l~~L~~L~Ls~N~l 525 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNKLTK-----------LSDDFRATTLPYLVGIDLSYNSF 525 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSCCCB-----------CCGGGSTTTCTTCCEEECCSSCC
T ss_pred hccccccccccCCccEEECcCCcCCc-----------cChhhhhccCCCcCEEECCCCCC
Confidence 32211 11123334556665542 233333 45 555555555555
No 95
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.26 E-value=9.2e-12 Score=132.30 Aligned_cols=136 Identities=18% Similarity=0.205 Sum_probs=79.7
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCC---CcC-CccccccceeecccCCCCCCCCCcccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRS---IEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISY 611 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~---l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~ 611 (699)
|++++|.++.++ .+..+++|+.|++++|.++. .+. +..+ +|+.|++++|.++.++ ..+. ++|+.|++++
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~--~~~~--~~L~~L~l~~ 202 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP--KDLP--ETLNELHLDH 202 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC--SSSC--SSCSCCBCCS
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC--cccc--CCCCEEECCC
Confidence 666666666554 35666666666666666642 222 5555 6666666666666552 2222 5666777777
Q ss_pred ccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC-CCccchHHHhhcCCc
Q 005381 612 NEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI-VNEKFKSFLIKVLPG 689 (699)
Q Consensus 612 N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~~~~~~~~~~~l~~ 689 (699)
|.|+.++. ..+..++.+..+++++|.+..+. +..+..+ +|+.|+|++|.| ..+. .+..+++
T Consensus 203 n~i~~~~~---~~l~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~L~~N~l~~lp~----~l~~l~~ 265 (332)
T 2ft3_A 203 NKIQAIEL---EDLLRYSKLYRLGLGHNQIRMIE----------NGSLSFLPTLRELHLDNNKLSRVPA----GLPDLKL 265 (332)
T ss_dssp SCCCCCCT---TSSTTCTTCSCCBCCSSCCCCCC----------TTGGGGCTTCCEEECCSSCCCBCCT----TGGGCTT
T ss_pred CcCCccCH---HHhcCCCCCCEEECCCCcCCcCC----------hhHhhCCCCCCEEECCCCcCeecCh----hhhcCcc
Confidence 77766642 22333333444566666554322 2367778 999999999999 3222 1356788
Q ss_pred cccccC
Q 005381 690 LKWLDG 695 (699)
Q Consensus 690 L~~LD~ 695 (699)
|+.||-
T Consensus 266 L~~L~l 271 (332)
T 2ft3_A 266 LQVVYL 271 (332)
T ss_dssp CCEEEC
T ss_pred CCEEEC
Confidence 887763
No 96
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.26 E-value=6.7e-12 Score=138.80 Aligned_cols=55 Identities=27% Similarity=0.389 Sum_probs=36.6
Q ss_pred EEccCCCCCc--cc--CCCCCcccCEEEccCCCCCCC-cC--CccccccceeecccCCCCCC
Q 005381 538 LQLKNLSLSR--LG--SFDKLLWVQMLDLSHNELRSI-EG--LEALQLLSCLNLSNNILGSF 592 (699)
Q Consensus 538 L~Ls~n~l~~--l~--~l~~L~~L~~LdLS~N~L~~l-~~--l~~L~~L~~L~Ls~N~l~~l 592 (699)
|+|++|.++. +. .+..+++|++|+|++|.++.+ |. +..+++|+.|++++|.++++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 7777777764 22 266777777777777777555 33 66777777777777777664
No 97
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.26 E-value=1.4e-10 Score=115.69 Aligned_cols=170 Identities=11% Similarity=0.031 Sum_probs=148.2
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHH-----
Q 005381 32 LHNHHNHIYSKEAVELSTKLLETNPEL-------YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR----- 99 (699)
Q Consensus 32 ~~~~~~~~~~~eaL~~~~~~L~~nP~~-------ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~----- 99 (699)
......|.+ ++|++.+.+++.++|++ ..+|...+.++...+. +++++..+++++.
T Consensus 46 ~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~a~~~~~~~ 112 (258)
T 3uq3_A 46 AAEYEKGEY-ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD------------LKKTIEYYQKSLTEHRTA 112 (258)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCCCH
T ss_pred HHHHHcccH-HHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHccc------------HHHHHHHHHHHHhcCchh
Confidence 334556666 89999999999999988 7999999999888754 5555555555555
Q ss_pred ---------------------hCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChH
Q 005381 100 ---------------------QNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEE 158 (699)
Q Consensus 100 ---------------------~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e 158 (699)
.+|.+..+|..++.++... +.++++++.++++++.+|.+..+|...+.+....+.+ +
T Consensus 113 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-~ 190 (258)
T 3uq3_A 113 DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK-SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF-P 190 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-H
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCH-H
Confidence 8899999999999999887 6999999999999999999999999999999999998 7
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhC------CCCchhHHHHH
Q 005381 159 DELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTD------PDDQSGWFYHL 228 (699)
Q Consensus 159 ~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~d------P~d~SaW~Y~~ 228 (699)
+.+++++++++.+|.+..+|..++.++..++. ++++++.+.+++..+ |++..+|..+.
T Consensus 191 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 191 EAIADCNKAIEKDPNFVRAYIRKATAQIAVKE------------YASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh------------HHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 89999999999999999999999999888755 799999999999999 99988887654
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=7e-12 Score=123.19 Aligned_cols=137 Identities=19% Similarity=0.227 Sum_probs=109.9
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAH 617 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~l 617 (699)
|++++|.++.++.+..+++|++|++++|.+..++.+..+++|+.|++++|.+++. .+..++.+++|+.|+|++|.|+..
T Consensus 49 L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~ 127 (197)
T 4ezg_A 49 ITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSD-KIPNLSGLTSLTLLDISHSAHDDS 127 (197)
T ss_dssp EEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGG-GSCCCTTCTTCCEEECCSSBCBGG
T ss_pred EeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcc-cChhhcCCCCCCEEEecCCccCcH
Confidence 9999999999889999999999999999998888899999999999999999873 357789999999999999999874
Q ss_pred CcccccccCCCCCcccccCCCCc-cceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCcccccc
Q 005381 618 SIDTTKYLCSSPLSHSVGSEWNH-GQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 618 p~~~~~~l~~l~ll~ll~l~~N~-l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~LD 694 (699)
. ...+..++.+..+++++|. +.. +| .+..+ +|+.|++++|.|.. +. .+..+++|+.||
T Consensus 128 ~---~~~l~~l~~L~~L~L~~n~~i~~-----------~~-~l~~l~~L~~L~l~~n~i~~--~~--~l~~l~~L~~L~ 187 (197)
T 4ezg_A 128 I---LTKINTLPKVNSIDLSYNGAITD-----------IM-PLKTLPELKSLNIQFDGVHD--YR--GIEDFPKLNQLY 187 (197)
T ss_dssp G---HHHHTTCSSCCEEECCSCTBCCC-----------CG-GGGGCSSCCEEECTTBCCCC--CT--TGGGCSSCCEEE
T ss_pred h---HHHHhhCCCCCEEEccCCCCccc-----------cH-hhcCCCCCCEEECCCCCCcC--hH--HhccCCCCCEEE
Confidence 3 2334445555555777775 422 22 57788 99999999999932 11 346788888775
No 99
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.26 E-value=1.3e-10 Score=130.05 Aligned_cols=177 Identities=10% Similarity=0.031 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSIL-DEELRVVESALRQNFKSYGAWHHRKWILSKGHS 120 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~-~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~ 120 (699)
++++..+..++...|+...+|..++.++...++ + ++++..++++++.+|++..+|...+.++... +
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~------------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g 151 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPD------------YSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK-G 151 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSS------------CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccc------------cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-C
Confidence 578888889999999999999999999988765 8 9999999999999999999999999999987 6
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhc---------CCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhh
Q 005381 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASM---------NRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR 191 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l---------~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~ 191 (699)
.+++++++++++++++|. ..+|...+.++..+ +.+ +++++++.++++.+|.+..+|+.++.++..+.-.
T Consensus 152 ~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 229 (474)
T 4abn_A 152 DVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHV-MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFN 229 (474)
T ss_dssp CHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 79999999999988 777 6899999999999999999999999998876110
Q ss_pred hccCccchhchHHHHHHHHHHHHHhCC---CCchhHHHHHHHHcCcCCC
Q 005381 192 KVEGFVSKEKVLPDEYEFVHQAIFTDP---DDQSGWFYHLWLLDQTVRV 237 (699)
Q Consensus 192 ~~~~~~~~~~~~~eeL~~~~~ai~~dP---~d~SaW~Y~~~Ll~~~~~~ 237 (699)
. +. ..+.++++++++.+|+..+| ++..+|+.+..++....+.
T Consensus 230 ~--~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~ 274 (474)
T 4abn_A 230 T--GQ--NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESY 274 (474)
T ss_dssp T--TC--CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCH
T ss_pred h--cc--ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCH
Confidence 0 00 12348999999999999999 9999999998888665443
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.26 E-value=2.7e-11 Score=113.50 Aligned_cols=135 Identities=10% Similarity=0.011 Sum_probs=123.6
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
..+++++..+..++..+|++..+|.+.+.+..+. +.+++++++++++++++|++..+|..++.+....+.+ +++++++
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~-~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~-~~A~~~~ 88 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEA-KEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT-DKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch-HHHHHHH
Confidence 5689999999999999999999999999999887 6999999999999999999999999999999999998 7899999
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHH-HHHHHHhCCCCchhHHHHHHHHcC
Q 005381 165 EDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEF-VHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 165 ~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~-~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
.++++.+|.+..+|...+.++...+. ++++++. +++|+.++|++..+|..+..|+..
T Consensus 89 ~~al~~~p~~~~~~~~la~~~~~~~~------------~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 89 RRSVELNPTQKDLVLKIAELLCKNDV------------TDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCS------------SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999887754 4556655 589999999999999999888865
No 101
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.25 E-value=6e-12 Score=144.53 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=35.1
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCC--cCCccccccceeecccCCCCCCCCCcccccccccc--cccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSI--EGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLR--ALNISY 611 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l--~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~--~L~Ls~ 611 (699)
|++++|.++.++ .+..+++|++|+|++|.++.+ |.+..+++|+.|++++|.++.+ .+..++.+++|+ .|++++
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL-SKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE-CHHHHHTTTTCCSEEEECTT
T ss_pred eeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc-ChhhhhhhcccceeEEecCC
Confidence 444444444431 444444455555554444433 2233344445555555444443 123344444444 444455
Q ss_pred ccCCCC
Q 005381 612 NEIGAH 617 (699)
Q Consensus 612 N~I~~l 617 (699)
|.++.+
T Consensus 189 n~l~~~ 194 (606)
T 3t6q_A 189 NDIAGI 194 (606)
T ss_dssp CCCCEE
T ss_pred CccCcc
Confidence 544443
No 102
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=1.3e-10 Score=115.20 Aligned_cols=151 Identities=7% Similarity=-0.092 Sum_probs=136.1
Q ss_pred CCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005381 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF-KSYGAWHHRKWILSKGHSSIDNELRLLDKFQK 134 (699)
Q Consensus 56 P~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nP-Ksy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~ 134 (699)
+.+..+|..++.++...+. +++++..+++++..+| ++..+|+.++.+.... +.++++++.++++++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~ 70 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKN------------YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI-KKYKEAADYFDIAIK 70 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-hcHHHHHHHHHHHHH
Confidence 4556899999999988765 9999999999999999 9999999999999987 699999999999999
Q ss_pred hCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCch-------HHHHHHHHHHHHhhhhhccCccchhchHHHHH
Q 005381 135 ADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY-------SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEY 207 (699)
Q Consensus 135 ~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~-------SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL 207 (699)
.+|.+..+|..++.+....+.+ +++++++.++++.+|.|. .+|..++.+...++. +++++
T Consensus 71 ~~p~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~A~ 137 (228)
T 4i17_A 71 KNYNLANAYIGKSAAYRDMKNN-QEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN------------IEKAE 137 (228)
T ss_dssp TTCSHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC------------HHHHH
T ss_pred hCcchHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc------------HHHHH
Confidence 9999999999999999999998 789999999999999999 567777777766543 89999
Q ss_pred HHHHHHHHhCCC--CchhHHHHHHHHc
Q 005381 208 EFVHQAIFTDPD--DQSGWFYHLWLLD 232 (699)
Q Consensus 208 ~~~~~ai~~dP~--d~SaW~Y~~~Ll~ 232 (699)
+.+.+++..+|+ +..+|+.+..+..
T Consensus 138 ~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 138 ENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 999999999999 8899988777663
No 103
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.25 E-value=5.5e-12 Score=144.71 Aligned_cols=126 Identities=28% Similarity=0.279 Sum_probs=103.9
Q ss_pred CeEEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccc
Q 005381 536 MCLQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISY 611 (699)
Q Consensus 536 ~~L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~ 611 (699)
+.|+|++|.|+.++ .|.++++|++|||++|+|+.+++ |.+|++|++|+|++|+|++++ +..|.++++|+.|+|++
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-GGGGTTCTTCCEEECTT
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-HHHhcCCCCCCEEECCC
Confidence 34999999999886 79999999999999999998876 999999999999999999873 35689999999999999
Q ss_pred ccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 612 NEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 612 N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
|+|+.+|... +..++-+..+++++|.+..+. .|..+..+ +|+.|+|++|.|
T Consensus 134 N~l~~l~~~~---~~~L~~L~~L~Ls~N~l~~~~---------~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 134 TNLASLENFP---IGHLKTLKELNVAHNLIQSFK---------LPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp SCCCCSTTCC---CTTCTTCCEEECCSSCCCCCC---------CCGGGGGCTTCCEEECCSSCC
T ss_pred CcCCCCChhh---hhcCcccCeeccccCccccCC---------CchhhccchhhhhhcccCccc
Confidence 9999986433 344444555677888775432 35677888 999999999999
No 104
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.24 E-value=5.2e-12 Score=139.68 Aligned_cols=124 Identities=27% Similarity=0.291 Sum_probs=101.3
Q ss_pred eEEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccc
Q 005381 537 CLQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYN 612 (699)
Q Consensus 537 ~L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N 612 (699)
.+++++|.++.+. .+..+++|+.|+|++|.++.+++ |..+++|+.|+|++|.|+++ .+..+..+++|+.|+|++|
T Consensus 279 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI-DSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGGTTCTTCCEEECCSS
T ss_pred EEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc-ChhHhcCcccCCEEECCCC
Confidence 3999999998654 78899999999999999987755 99999999999999999886 3467889999999999999
Q ss_pred cCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 613 EIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 613 ~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
+|+.++. ..+..++-+..+++++|.++.+. +..|..+ +|+.|+|++|++
T Consensus 358 ~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 358 HIRALGD---QSFLGLPNLKELALDTNQLKSVP----------DGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CCCEECT---TTTTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCB
T ss_pred cccccCh---hhccccccccEEECCCCccccCC----------HhHhccCCcccEEEccCCCc
Confidence 9988742 34455555566678888775432 2457888 999999999999
No 105
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.24 E-value=2.1e-10 Score=116.08 Aligned_cols=171 Identities=8% Similarity=-0.036 Sum_probs=124.3
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHH-H
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK-W 113 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~-w 113 (699)
...|.+ ++|+..+.+++..+|++..+|...+.+....++ +++++..+++++..+|.+..+|..++ .
T Consensus 85 ~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~al~~~~~~~~~~~~l~~~ 151 (272)
T 3u4t_A 85 MKKGQD-SLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN------------FPLAIQYMEKQIRPTTTDPKVFYELGQA 151 (272)
T ss_dssp HHTTCH-HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC------------HHHHHHHHGGGCCSSCCCHHHHHHHHHH
T ss_pred HHcccH-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC------------HHHHHHHHHHHhhcCCCcHHHHHHHHHH
Confidence 344555 678888888888888888888888877777654 77888888888888888888888887 5
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCC---ChHHHHHHHHHHHHhc---cCc-----hHHHHHHH
Q 005381 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR---SEEDELKYTEDMICNN---FSN-----YSAWHNRS 182 (699)
Q Consensus 114 ~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~---~~e~EL~~~~~~I~~n---~sN-----~SAW~~R~ 182 (699)
+.... .++++++.++++++++|.+..+|..++.+...++. + ++.+.+++++++.. |.. ..+|.+.+
T Consensus 152 ~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 152 YYYNK--EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQ-GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HHHTT--CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSS-CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhh-HHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 44433 77788888888888888888888888877777765 4 45666777777764 432 25666666
Q ss_pred HHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 183 LLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 183 ~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
.+....+. ++++++++.+++.++|+|..+|--+..+...
T Consensus 229 ~~~~~~~~------------~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 229 YYYTINRD------------KVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHcCC------------HHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 66655433 7999999999999999999999887777654
No 106
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=2.4e-10 Score=107.45 Aligned_cols=166 Identities=11% Similarity=0.030 Sum_probs=149.5
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHH
Q 005381 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHR 111 (699)
Q Consensus 32 ~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR 111 (699)
......|.+ ++|+..+.+++..+|++..+|...+.+....+. +++++..+++++..+|.+..+|...
T Consensus 16 ~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~ 82 (186)
T 3as5_A 16 ISHAKAGRY-SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA------------VDRGTELLERSLADAPDNVKVATVL 82 (186)
T ss_dssp HHHHHHTCH-HHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcCH-HHHHHHHHHHHHhCccChHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 334456677 799999999999999999999999999887765 8999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhh
Q 005381 112 KWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR 191 (699)
Q Consensus 112 ~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~ 191 (699)
+.++... +.++++++.++++++.+|.+..+|...+.+....+.+ ++.++++.++++.+|.+..+|...+.+....+.
T Consensus 83 a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~- 159 (186)
T 3as5_A 83 GLTYVQV-QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRF-DEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR- 159 (186)
T ss_dssp HHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHh-cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcH-HHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC-
Confidence 9999876 6899999999999999999999999999999999988 789999999999999999999999988877644
Q ss_pred hccCccchhchHHHHHHHHHHHHHhCCCCchhH
Q 005381 192 KVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (699)
Q Consensus 192 ~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW 224 (699)
++++++.+.+++..+|++....
T Consensus 160 -----------~~~A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 160 -----------HEEALPHFKKANELDEGASVEL 181 (186)
T ss_dssp -----------HHHHHHHHHHHHHHHHCCCGGG
T ss_pred -----------HHHHHHHHHHHHHcCCCchhhH
Confidence 7999999999999999887543
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.24 E-value=1.8e-11 Score=122.65 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=108.9
Q ss_pred eEEccCCCCCcccCCCCCcccCEEEccCCCCCCCcC---CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 537 CLQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEG---LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 537 ~L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~---l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
.+++++|.++.+|. .-...++.|+|++|.|+.+++ |..+++|+.|+|++|.|+.+. +..|..+++|+.|+|++|.
T Consensus 15 ~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCc
Confidence 39999999998873 113467899999999988743 899999999999999999873 4578999999999999999
Q ss_pred CCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCcccc
Q 005381 614 IGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKW 692 (699)
Q Consensus 614 I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~ 692 (699)
|+.++... +..++-+..+++++|.+..+. |..|..+ +|+.|+|++|.|. .+....+..+++|+.
T Consensus 93 l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~----------~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 93 LENVQHKM---FKGLESLKTLMLRSNRITCVG----------NDSFIGLSSVRLLSLYDNQIT--TVAPGAFDTLHSLST 157 (220)
T ss_dssp CCCCCGGG---GTTCSSCCEEECTTSCCCCBC----------TTSSTTCTTCSEEECTTSCCC--CBCTTTTTTCTTCCE
T ss_pred cCccCHhH---hcCCcCCCEEECCCCcCCeEC----------HhHcCCCccCCEEECCCCcCC--EECHHHhcCCCCCCE
Confidence 99986433 344455555678888875532 4578889 9999999999992 111123456778877
Q ss_pred cc
Q 005381 693 LD 694 (699)
Q Consensus 693 LD 694 (699)
||
T Consensus 158 L~ 159 (220)
T 2v70_A 158 LN 159 (220)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 108
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.24 E-value=6.6e-12 Score=140.06 Aligned_cols=123 Identities=19% Similarity=0.182 Sum_probs=76.4
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
|+|++|.++.++ .|..+++|++|+|++|.+..+++ |..+++|+.|+|++|.++.+ .+..|..+++|+.|+|++|.
T Consensus 85 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI-SHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE-CTTSSTTCTTCCEEEEESCC
T ss_pred EECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee-ChhhccCCCCCCEEECCCCc
Confidence 777777777665 46667777777777777755543 66777777777777777665 23556667777777777777
Q ss_pred CCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 614 IGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 614 I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
++.++... +..++.+..+++.+|.+..+. +..|..+ +|+.|+|++|++
T Consensus 164 l~~~~~~~---l~~l~~L~~L~l~~n~i~~~~----------~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 164 LTSIPTEA---LSHLHGLIVLRLRHLNINAIR----------DYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp CSSCCHHH---HTTCTTCCEEEEESCCCCEEC----------TTCSCSCTTCCEEEEECCTT
T ss_pred CcccChhH---hcccCCCcEEeCCCCcCcEeC----------hhhcccCcccceeeCCCCcc
Confidence 77665222 222333333445555543322 2356777 888888888776
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.24 E-value=2.4e-11 Score=122.48 Aligned_cols=140 Identities=16% Similarity=0.133 Sum_probs=107.8
Q ss_pred eEEccCCCCCcccCCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccC
Q 005381 537 CLQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEI 614 (699)
Q Consensus 537 ~L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I 614 (699)
.++.+++.++.+|. .-.++|+.|+|++|.|+.+++ |..+++|+.|+|++|+|+.++ +..|..+++|+.|+|++|+|
T Consensus 23 ~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 23 TVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp EEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC
T ss_pred EeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcC
Confidence 38899999998883 223899999999999988855 999999999999999998873 35678999999999999999
Q ss_pred CCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCccccc
Q 005381 615 GAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWL 693 (699)
Q Consensus 615 ~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~L 693 (699)
+.++... +..++.+..+++++|.+.. +|..+..+ +|+.|+|++|.|. .+....+..+++|+.|
T Consensus 101 ~~l~~~~---~~~l~~L~~L~Ls~N~l~~-----------lp~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 101 TVLPSAV---FDRLVHLKELFMCCNKLTE-----------LPRGIERLTHLTHLALDQNQLK--SIPHGAFDRLSSLTHA 164 (229)
T ss_dssp CCCCTTT---TTTCTTCCEEECCSSCCCS-----------CCTTGGGCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEE
T ss_pred CccChhH---hCcchhhCeEeccCCcccc-----------cCcccccCCCCCEEECCCCcCC--ccCHHHHhCCCCCCEE
Confidence 9986433 3344445556777777743 35567788 9999999999992 1112234567788766
Q ss_pred c
Q 005381 694 D 694 (699)
Q Consensus 694 D 694 (699)
+
T Consensus 165 ~ 165 (229)
T 3e6j_A 165 Y 165 (229)
T ss_dssp E
T ss_pred E
Confidence 4
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=3.4e-12 Score=121.87 Aligned_cols=133 Identities=25% Similarity=0.262 Sum_probs=103.8
Q ss_pred cccccccCCCCCccc-cchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCCcccCEEEcc
Q 005381 485 YNDLMRLDPTHVQYY-KDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKLLWVQMLDLS 563 (699)
Q Consensus 485 l~~L~~LDls~n~~~-~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L~~L~~LdLS 563 (699)
..+|+.|++++|.+. ..++ ..+..+.+++. |++++|.++.+..+..+++|+.|+|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~----------------~~~~~l~~L~~-------L~l~~n~l~~~~~~~~l~~L~~L~Ls 79 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIE----------------GLTAEFVNLEF-------LSLINVGLISVSNLPKLPKLKKLELS 79 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCS----------------SCCGGGGGCCE-------EEEESSCCCCCSSCCCCSSCCEEEEE
T ss_pred cccCCEEECCCCCCChhhHH----------------HHHHhCCCCCE-------EeCcCCCCCChhhhccCCCCCEEECc
Confidence 367999999999832 1121 11122233333 99999999988889999999999999
Q ss_pred CCCCCC-CcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccccCCCCcc
Q 005381 564 HNELRS-IEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHG 641 (699)
Q Consensus 564 ~N~L~~-l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l 641 (699)
+|.++. +|. +..+++|+.|++++|.|++++.+..+..+++|+.|++++|+|+.+|. .
T Consensus 80 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~--~------------------- 138 (168)
T 2ell_A 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND--Y------------------- 138 (168)
T ss_dssp SCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT--H-------------------
T ss_pred CCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH--H-------------------
Confidence 999977 666 77799999999999999987544778999999999999999988751 0
Q ss_pred ceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 642 QTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 642 ~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
....+..+ +|+.|++++|.+
T Consensus 139 -------------~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 139 -------------RESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp -------------HHHHHTTCSSCCEETTEETTS
T ss_pred -------------HHHHHHhCccCcEecCCCCCh
Confidence 01246667 899999999988
No 111
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.23 E-value=6.4e-12 Score=149.02 Aligned_cols=135 Identities=19% Similarity=0.164 Sum_probs=90.4
Q ss_pred CCcHHHHHhcccccccCCCCCccccchhhhHH----hhhh---ccchH-HHhhhhccCCCCCCCCCCCCeEEccCCCCC-
Q 005381 476 SHSEEVLELYNDLMRLDPTHVQYYKDQHSLVL----LQQV---TSNWE-SLLSRCFHYSNSPSNRGSPMCLQLKNLSLS- 546 (699)
Q Consensus 476 ~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~----l~~l---~~~~~-~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~- 546 (699)
+..+..+..+++|++||+++|.+.+.++..+. ++.+ .+.+. .++..+..+..++ .|++++|.++
T Consensus 408 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-------~L~L~~N~l~~ 480 (768)
T 3rgz_A 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE-------TLILDFNDLTG 480 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC-------EEECCSSCCCS
T ss_pred cccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce-------EEEecCCcccC
Confidence 34556677888888888888875433222110 1110 00000 1122222333333 3888888888
Q ss_pred ccc-CCCCCcccCEEEccCCCCC-CCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCC-CCC
Q 005381 547 RLG-SFDKLLWVQMLDLSHNELR-SIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIG-AHS 618 (699)
Q Consensus 547 ~l~-~l~~L~~L~~LdLS~N~L~-~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~-~lp 618 (699)
.++ .+..+++|+.|+|++|.++ .+|. +..+++|+.|+|++|++++. .|..+..+++|+.|+|++|+++ .+|
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN-IPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE-CCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc-CCHHHcCCCCCCEEECCCCccCCcCC
Confidence 444 7888899999999999985 6676 88899999999999998764 4677888999999999999885 555
No 112
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.23 E-value=2.9e-10 Score=123.86 Aligned_cols=183 Identities=11% Similarity=0.009 Sum_probs=151.2
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCCh
Q 005381 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY 105 (699)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy 105 (699)
.+..........|.+ ++|+.++.+++..+|++..+|+.++.+....+. +++++..+++++..+|++.
T Consensus 28 ~~~~~~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~p~~~ 94 (450)
T 2y4t_A 28 KHLELGKKLLAAGQL-ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK------------SKAALPDLTKVIQLKMDFT 94 (450)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhcCCCcH
Confidence 344444445567777 799999999999999999999999999988865 8999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh---hhhhHH------------HHHHHhcCCChHHHHHHHHHHHHh
Q 005381 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF---HAWNYR------------RFVAASMNRSEEDELKYTEDMICN 170 (699)
Q Consensus 106 ~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~---haW~yR------------~~vl~~l~~~~e~EL~~~~~~I~~ 170 (699)
.+|...+.++.+. +.++++++.++++++.+|.+. .+|..- +.+....+.+ ++.+++++++++.
T Consensus 95 ~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~ 172 (450)
T 2y4t_A 95 AARLQRGHLLLKQ-GKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY-TAAIAFLDKILEV 172 (450)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHh
Confidence 9999999999887 689999999999999999988 776544 4446666777 6788888999999
Q ss_pred ccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcC
Q 005381 171 NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTV 235 (699)
Q Consensus 171 n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~ 235 (699)
+|.+..+|..++.++...+. ++++++.+.+++..+|++..+|+.+..++....
T Consensus 173 ~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 173 CVWDAELRELRAECFIKEGE------------PRKAISDLKAASKLKNDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTC------------GGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 99999999998888877654 678888888888888988888888777775543
No 113
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.23 E-value=8.9e-12 Score=128.75 Aligned_cols=180 Identities=19% Similarity=0.178 Sum_probs=128.1
Q ss_pred ccccccCCCCCccccchhhhHHhhhhccchHHHhh-hhccCCCCCCCCCCCCeEEccCCCCCccc--CCCCCcccCEEEc
Q 005381 486 NDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLS-RCFHYSNSPSNRGSPMCLQLKNLSLSRLG--SFDKLLWVQMLDL 562 (699)
Q Consensus 486 ~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~-~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~--~l~~L~~L~~LdL 562 (699)
..|++||+++|.+. .+.. .+..+.+++. |++++|.++.++ .+..+++|++|+|
T Consensus 28 ~~l~~L~ls~n~l~-----------------~~~~~~~~~l~~L~~-------L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (276)
T 2z62_A 28 FSTKNLDLSFNPLR-----------------HLGSYSFFSFPELQV-------LDLSRCEIQTIEDGAYQSLSHLSTLIL 83 (276)
T ss_dssp TTCCEEECTTCCCC-----------------EECTTTTTTCTTCSE-------EECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCccc-----------------ccCHhHhccccCCcE-------EECCCCcCCccCHHHccCCcCCCEEEC
Confidence 46899999998721 1111 2222333333 999999999876 6899999999999
Q ss_pred cCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccccCCCCc
Q 005381 563 SHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNH 640 (699)
Q Consensus 563 S~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~ 640 (699)
++|.++.++. |..+++|+.|++++|.++.+. +..+..+++|+.|++++|.++.+++ ...+..++.+..+++++|.
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~l--~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKL--PEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCCC--CGGGGGCTTCCEEECCSSC
T ss_pred CCCccCccChhhhcCCccccEEECCCCCccccC-chhcccCCCCCEEECcCCccceecC--chhhccCCCCCEEECCCCC
Confidence 9999988775 999999999999999999874 3468899999999999999988541 2334445555566888888
Q ss_pred cceeec----------------C-CcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCcccccc
Q 005381 641 GQTVID----------------D-DIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 641 l~~~~~----------------~-~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~LD 694 (699)
+..+.. + ..+....++...... +|+.|+|++|.|. .+...++..+++|+.||
T Consensus 161 l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK--SVPDGIFDRLTSLQKIW 230 (276)
T ss_dssp CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS--CCCTTTTTTCCSCCEEE
T ss_pred CCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCcee--ecCHhHhcccccccEEE
Confidence 765432 2 222333334444445 8999999999992 11223345678887665
No 114
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.23 E-value=6.8e-12 Score=148.77 Aligned_cols=53 Identities=26% Similarity=0.392 Sum_probs=33.6
Q ss_pred EEccCCCCC-ccc-CCCCCcccCEEEccCCCCC-CCcC-CccccccceeecccCCCC
Q 005381 538 LQLKNLSLS-RLG-SFDKLLWVQMLDLSHNELR-SIEG-LEALQLLSCLNLSNNILG 590 (699)
Q Consensus 538 L~Ls~n~l~-~l~-~l~~L~~L~~LdLS~N~L~-~l~~-l~~L~~L~~L~Ls~N~l~ 590 (699)
|++++|.++ .++ .++.+++|++|+|++|.+. .+|. +..+++|+.|++++|.++
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 666666666 344 5666666667777666663 4555 666666666666666554
No 115
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.23 E-value=1.1e-11 Score=142.41 Aligned_cols=183 Identities=20% Similarity=0.249 Sum_probs=127.7
Q ss_pred CCcHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHH-hhhhccCCCCCCCCCCCCeEEccCCCCCcc-c-CCC
Q 005381 476 SHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESL-LSRCFHYSNSPSNRGSPMCLQLKNLSLSRL-G-SFD 552 (699)
Q Consensus 476 ~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l-~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l-~-~l~ 552 (699)
+..+..+..+++|++||+++|.+. .+ +..+..+.+++. |+|++|.++.+ + .|.
T Consensus 46 ~~~~~~~~~l~~L~~L~Ls~n~l~-----------------~i~~~~~~~l~~L~~-------L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 46 ILKSYSFSNFSELQWLDLSRCEIE-----------------TIEDKAWHGLHHLSN-------LILTGNPIQSFSPGSFS 101 (606)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCC-----------------EECTTTTTTCTTCCE-------EECTTCCCCCCCTTSST
T ss_pred EeChhhccCCccCcEEeCCCCccc-----------------ccCHHHhhchhhcCE-------eECCCCcccccChhhcC
Confidence 334446778899999999988721 11 112223344443 99999999977 3 799
Q ss_pred CCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCC
Q 005381 553 KLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPL 630 (699)
Q Consensus 553 ~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~l 630 (699)
++++|++|+|++|.+..+++ +..+++|+.|++++|.++++..|..++.+++|+.|++++|.++.++...+..+..+..
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence 99999999999999988875 9999999999999999987655788999999999999999998886444444433321
Q ss_pred -cccccCCCCccceeecCCcchhhhhhccCCCCCccEEEecCCCCCCccchHHHhhcCCccccc
Q 005381 631 -SHSVGSEWNHGQTVIDDDIKSYWEAYFILKGLNLTQFDIVGNAIVNEKFKSFLIKVLPGLKWL 693 (699)
Q Consensus 631 -l~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~L 693 (699)
+..+++++|.+..+.. ..+...+|+.|+|++|.+.... ....+..++.|+.+
T Consensus 182 ~l~~L~l~~n~l~~~~~----------~~~~~~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~l 234 (606)
T 3vq2_A 182 VNLSLDMSLNPIDFIQD----------QAFQGIKLHELTLRGNFNSSNI-MKTCLQNLAGLHVH 234 (606)
T ss_dssp CCCEEECTTCCCCEECT----------TTTTTCEEEEEEEESCCSCHHH-HHHHHHTTTTCEEE
T ss_pred ccceeeccCCCcceeCc----------ccccCceeeeeeccCCccchhH-HHHHhccccccccc
Confidence 2234667776654332 2233238999999999883222 23344556666543
No 116
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.22 E-value=6.6e-10 Score=117.46 Aligned_cols=190 Identities=14% Similarity=0.079 Sum_probs=161.2
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCC----------CCch---h------------------
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND----------SDPD---S------------------ 82 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~----------~~~~---~------------------ 82 (699)
....|.+ ++|+..+.+++..+|++..+|...+.++...+...+ ..|+ .
T Consensus 108 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 108 QAENEQE-LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------C
T ss_pred HHHCcCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHH
Confidence 3455666 799999999999999999999999988877643100 0110 0
Q ss_pred ------hhhhHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcC
Q 005381 83 ------LKSILDEELRVVESALRQNFK--SYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMN 154 (699)
Q Consensus 83 ------~~~~~~eEL~~~~~~L~~nPK--sy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~ 154 (699)
....+++++..+++++..+|. ...+|...+.++... +.+++++++++++++++|.+..+|...+.+....|
T Consensus 187 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS-GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence 124577888999999999999 889999999999887 69999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC-----------chh
Q 005381 155 RSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD-----------QSG 223 (699)
Q Consensus 155 ~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d-----------~Sa 223 (699)
.+ ++.+++++++++.+|.+..+|..++.++...+. ++++++.+.+++..+|++ ..+
T Consensus 266 ~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 266 QS-EEAVAAYRRALELQPGYIRSRYNLGISCINLGA------------HREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp CH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred CH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 98 789999999999999999999999999888755 899999999999999998 889
Q ss_pred HHHHHHHHcCcCCCC
Q 005381 224 WFYHLWLLDQTVRVD 238 (699)
Q Consensus 224 W~Y~~~Ll~~~~~~~ 238 (699)
|..+..++....+.+
T Consensus 333 ~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 333 WSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHhCChH
Confidence 999988887655433
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.22 E-value=1.8e-10 Score=131.29 Aligned_cols=162 Identities=9% Similarity=-0.110 Sum_probs=134.4
Q ss_pred CCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 005381 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK 117 (699)
Q Consensus 38 ~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~ 117 (699)
|++ ++|++.+.+++..+|++..+|...+.++...++ +++++..++++++.+|++..+|...+.++..
T Consensus 3 g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 69 (568)
T 2vsy_A 3 ADG-PRELLQLRAAVRHRPQDFVAWLMLADAELGMGD------------TTAGEMAVQRGLALHPGHPEAVARLGRVRWT 69 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH
T ss_pred ccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 445 799999999999999999999999999988865 9999999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHh---hhhhcc
Q 005381 118 GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNL---LKRKVE 194 (699)
Q Consensus 118 ~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l---~~~~~~ 194 (699)
. +.+++++++++++++++|.+..+|...+.+....+.+ ++++++++++++.+|.+..+|...+.++..+ +.
T Consensus 70 ~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~---- 143 (568)
T 2vsy_A 70 Q-QRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQA-EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA---- 143 (568)
T ss_dssp T-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT----
T ss_pred C-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc----
Confidence 7 6999999999999999999999999999999999998 7899999999999999999999999988876 43
Q ss_pred CccchhchHHHHHHHHHHHHHhCCCCchhHHH
Q 005381 195 GFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFY 226 (699)
Q Consensus 195 ~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y 226 (699)
++++++.+.+++..+|++.++|..
T Consensus 144 --------~~~A~~~~~~al~~~p~~~~~~~~ 167 (568)
T 2vsy_A 144 --------LDVLSAQVRAAVAQGVGAVEPFAF 167 (568)
T ss_dssp --------HHHHHHHHHHHHHHTCCCSCHHHH
T ss_pred --------HHHHHHHHHHHHhcCCcccChHHH
Confidence 799999999999999999888754
No 118
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.22 E-value=2.5e-11 Score=131.82 Aligned_cols=37 Identities=27% Similarity=0.323 Sum_probs=18.4
Q ss_pred ccceeecccCCCCCCCCCccccccccccccccccccCCCC
Q 005381 578 LLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAH 617 (699)
Q Consensus 578 ~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~l 617 (699)
+|+.|++++|.+++. ..+..+++|+.|+|++|.|+.+
T Consensus 227 ~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 227 ELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp SCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEE
T ss_pred cccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCc
Confidence 344444444444432 3345555555666666655554
No 119
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.22 E-value=1.1e-11 Score=142.06 Aligned_cols=164 Identities=22% Similarity=0.239 Sum_probs=108.1
Q ss_pred CcHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhh-hccCCCCCCCCCCCCeEEccCCCCCccc--CCCC
Q 005381 477 HSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSR-CFHYSNSPSNRGSPMCLQLKNLSLSRLG--SFDK 553 (699)
Q Consensus 477 ~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~-~~~l~~l~~l~L~~~~L~Ls~n~l~~l~--~l~~ 553 (699)
..+..|..+++|++||+++|. +..++.. +..+.+++. |+|++|.|+.++ .|.+
T Consensus 67 l~~~~f~~l~~L~~L~Ls~N~-----------------i~~i~~~~f~~L~~L~~-------L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 67 LGSYSFFSFPELQVLDLSRCE-----------------IQTIEDGAYQSLSHLST-------LILTGNPIQSLALGAFSG 122 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTCC-----------------CCEECTTTTTTCTTCCE-------EECTTCCCCEECGGGGTT
T ss_pred CCHHHHhCCCCCCEEECCCCc-----------------CCCcChhHhcCCCCCCE-------EEccCCcCCCCCHHHhcC
Confidence 334567788888888888887 2222222 223344333 888888888776 5788
Q ss_pred CcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCc
Q 005381 554 LLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLS 631 (699)
Q Consensus 554 L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll 631 (699)
+++|++|+|++|.|+.+++ |.++++|+.|+|++|.|+.+..|..++.+++|+.|+|++|+|+.++...+..+......
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 8888888888888888876 88888888888888888877666777888888888888888888764444444333211
Q ss_pred -ccccCCCCccceeecCCcchhhhhhccCCCCCccEEEecCCCC
Q 005381 632 -HSVGSEWNHGQTVIDDDIKSYWEAYFILKGLNLTQFDIVGNAI 674 (699)
Q Consensus 632 -~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L~L~~LdLs~N~l 674 (699)
..++++.|.+..+.. ..+..+.+..|++++|..
T Consensus 203 ~~~~~ls~n~l~~i~~----------~~~~~~~~~~l~l~~n~~ 236 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQP----------GAFKEIRLHKLTLRNNFD 236 (635)
T ss_dssp CCEEECTTCCCCEECT----------TTTTTCEEEEEEEESCCS
T ss_pred hhhhhcccCcccccCc----------ccccchhhhhhhhhcccc
Confidence 123445555543321 122222556666666654
No 120
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.22 E-value=6e-12 Score=127.30 Aligned_cols=122 Identities=13% Similarity=0.177 Sum_probs=64.9
Q ss_pred EEccC-CCCCccc--CCCCCcccCEEEccCCCCCCCcCCccccccc---eeecccC-CCCCCCCCcccccccccc-cccc
Q 005381 538 LQLKN-LSLSRLG--SFDKLLWVQMLDLSHNELRSIEGLEALQLLS---CLNLSNN-ILGSFTALEPIRQLKSLR-ALNI 609 (699)
Q Consensus 538 L~Ls~-n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~---~L~Ls~N-~l~~l~~~~~l~~l~~L~-~L~L 609 (699)
|++++ |.++.++ .|..+++|+.|++++|.++.+|.|..+++|+ .|++++| .++.++ +..|..+++|+ .|++
T Consensus 85 L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 85 IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKL 163 (239)
T ss_dssp EEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEEC
T ss_pred EECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcC-cccccchhcceeEEEc
Confidence 55555 5555544 4555556666666666665555555555555 6666666 555542 23355556666 6666
Q ss_pred ccccCCCCCcccccccCCCCCcccccCCCCc-cceeecCCcchhhhhhccCCCC--CccEEEecCCCC
Q 005381 610 SYNEIGAHSIDTTKYLCSSPLSHSVGSEWNH-GQTVIDDDIKSYWEAYFILKGL--NLTQFDIVGNAI 674 (699)
Q Consensus 610 s~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~-l~~~~~~~~~~~~~~p~~l~~L--~L~~LdLs~N~l 674 (699)
++|.|+.+|...+ .. .-+..+++.+|. +..+. +..|.++ +|+.|+|++|+|
T Consensus 164 ~~n~l~~i~~~~~---~~-~~L~~L~L~~n~~l~~i~----------~~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 164 YNNGFTSVQGYAF---NG-TKLDAVYLNKNKYLTVID----------KDAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp CSCCCCEECTTTT---TT-CEEEEEECTTCTTCCEEC----------TTTTTTCSBCCSEEECTTCCC
T ss_pred CCCCCcccCHhhc---CC-CCCCEEEcCCCCCcccCC----------HHHhhccccCCcEEECCCCcc
Confidence 6666655542111 11 122223444442 43221 2345554 788888888888
No 121
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.22 E-value=1.7e-11 Score=142.94 Aligned_cols=80 Identities=35% Similarity=0.349 Sum_probs=49.5
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccc--ccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPI--RQLKSLRALNISY 611 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l--~~l~~L~~L~Ls~ 611 (699)
|+|++|.++.++ .+..+++|++|+|++|.++.++. +..+++|+.|++++|.++++. +..+ ..+++|+.|++++
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK-SEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC-HHHHGGGTTCEESEEECTT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC-HHHhhccccccccEEECCC
Confidence 666666666554 56666777777777776654433 666667777777777666542 1222 2346677777777
Q ss_pred ccCCCCC
Q 005381 612 NEIGAHS 618 (699)
Q Consensus 612 N~I~~lp 618 (699)
|.++.++
T Consensus 181 n~l~~~~ 187 (680)
T 1ziw_A 181 NQIKEFS 187 (680)
T ss_dssp CCCCCBC
T ss_pred CcccccC
Confidence 7766654
No 122
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.22 E-value=4.7e-11 Score=115.29 Aligned_cols=98 Identities=20% Similarity=0.238 Sum_probs=83.7
Q ss_pred eEEccCCCCCcccC-CCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 537 CLQLKNLSLSRLGS-FDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 537 ~L~Ls~n~l~~l~~-l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
.+++++|.++.+|. + .++|+.|+|++|.|+.+++ |..+++|+.|+|++|+|++++ +..|..+++|+.|+|++|+
T Consensus 16 ~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCc
Confidence 38999999998883 4 3899999999999988865 999999999999999999973 3457889999999999999
Q ss_pred CCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 614 IGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 614 I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
|+.+|. ..|..+ +|+.|+|++|++
T Consensus 93 l~~l~~-------------------------------------~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 LKSIPR-------------------------------------GAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCT-------------------------------------TTTTTCTTCSEEECCSSCB
T ss_pred cceeCH-------------------------------------HHhccccCCCEEEeCCCCc
Confidence 998852 246667 899999999998
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.21 E-value=2e-11 Score=131.60 Aligned_cols=137 Identities=24% Similarity=0.207 Sum_probs=105.9
Q ss_pred eEEccCCCCCccc--CCC-CCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccc
Q 005381 537 CLQLKNLSLSRLG--SFD-KLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISY 611 (699)
Q Consensus 537 ~L~Ls~n~l~~l~--~l~-~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~ 611 (699)
.|+|++|.|+.++ .+. .+++|+.|+|++|.|+.+++ |..+++|+.|+|++|+|+.+. +..|..+++|+.|+|++
T Consensus 43 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~ 121 (361)
T 2xot_A 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD-EFLFSDLQALEVLLLYN 121 (361)
T ss_dssp EEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCS
T ss_pred EEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCC-HHHhCCCcCCCEEECCC
Confidence 3999999999876 566 89999999999999998886 999999999999999999873 35688999999999999
Q ss_pred ccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccC---CCC-CccEEEecCCCCCCccchHHHhhcC
Q 005381 612 NEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFIL---KGL-NLTQFDIVGNAIVNEKFKSFLIKVL 687 (699)
Q Consensus 612 N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l---~~L-~L~~LdLs~N~l~~~~~~~~~~~~l 687 (699)
|+|+.++. ..+..++.+..+++++|.+..+.. ..| ..+ +|+.|+|++|.|. .+....+..+
T Consensus 122 N~i~~~~~---~~~~~l~~L~~L~L~~N~l~~l~~----------~~~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~l 186 (361)
T 2xot_A 122 NHIVVVDR---NAFEDMAQLQKLYLSQNQISRFPV----------ELIKDGNKLPKLMLLDLSSNKLK--KLPLTDLQKL 186 (361)
T ss_dssp SCCCEECT---TTTTTCTTCCEEECCSSCCCSCCG----------GGTC----CTTCCEEECCSSCCC--CCCHHHHHHS
T ss_pred CcccEECH---HHhCCcccCCEEECCCCcCCeeCH----------HHhcCcccCCcCCEEECCCCCCC--ccCHHHhhhc
Confidence 99998853 334445555556888888765432 233 567 9999999999993 1222334445
Q ss_pred Cc
Q 005381 688 PG 689 (699)
Q Consensus 688 ~~ 689 (699)
+.
T Consensus 187 ~~ 188 (361)
T 2xot_A 187 PA 188 (361)
T ss_dssp CH
T ss_pred cH
Confidence 54
No 124
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.21 E-value=9e-10 Score=111.82 Aligned_cols=183 Identities=10% Similarity=-0.083 Sum_probs=152.5
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCC
Q 005381 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPEL---YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF 102 (699)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~---ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nP 102 (699)
.+..........|.+ ++|+..+.+++..+|++ ..+|...+.+....++ +++++..+++++..+|
T Consensus 17 ~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~------------~~~A~~~~~~~l~~~p 83 (261)
T 3qky_A 17 EAFERAMEFYNQGKY-DRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE------------YLLAASEYERFIQIYQ 83 (261)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc------------HHHHHHHHHHHHHHCC
Confidence 334445555677888 89999999999999999 8999999999998865 9999999999999988
Q ss_pred CC---hHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCCChhhh-----------------hHHHHHHHhcC
Q 005381 103 KS---YGAWHHRKWILSK--------GHSSIDNELRLLDKFQKADSRNFHAW-----------------NYRRFVAASMN 154 (699)
Q Consensus 103 Ks---y~aW~hR~w~L~~--------~~~~~~~EL~~~~k~L~~dprN~haW-----------------~yR~~vl~~l~ 154 (699)
++ ..+|+.++.++.. . +.+++++..++++++.+|.+..++ ..++.+....|
T Consensus 84 ~~~~~~~a~~~lg~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 162 (261)
T 3qky_A 84 IDPRVPQAEYERAMCYYKLSPPYELDQ-TDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRE 162 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHCCCTTSCC-HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHHHhcccccccc-hhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 55 6789999999887 5 589999999999999999998888 77788888899
Q ss_pred CChHHHHHHHHHHHHhccC---chHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHH
Q 005381 155 RSEEDELKYTEDMICNNFS---NYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (699)
Q Consensus 155 ~~~e~EL~~~~~~I~~n~s---N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~ 225 (699)
.+ ++++++++++++.+|. ...+|.+.+.+...++.... .....+.++++++.+.+++..+|++..+..
T Consensus 163 ~~-~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~--~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 163 LY-EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSV--RARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp CH-HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSC--GGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred CH-HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccch--hhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 98 7899999999999998 45699999998888754210 011235589999999999999999965443
No 125
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.21 E-value=2.5e-12 Score=144.54 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=103.9
Q ss_pred eEEccCCCCCcccCCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccc-cccccccccccccc
Q 005381 537 CLQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIR-QLKSLRALNISYNE 613 (699)
Q Consensus 537 ~L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~-~l~~L~~L~Ls~N~ 613 (699)
.|++++|.++.++. ..+++|+.|+|++|.|+.+++ +..+++|+.|+|++|.|+++. |..+. .+++|+.|+|++|.
T Consensus 103 ~L~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 103 TLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EEECCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-GGGGGGGTTTCCEEECTTSC
T ss_pred EEECcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC-hHHHhhhCCcccEEecCCCc
Confidence 38889999887753 356899999999999988755 899999999999999999863 45554 78999999999999
Q ss_pred CCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCcccc
Q 005381 614 IGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKW 692 (699)
Q Consensus 614 I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~ 692 (699)
|+.+|. ...++.+..+++++|.+..+ |..+..+ +|+.|+|++|.|. .++. .+..+++|+.
T Consensus 181 l~~~~~-----~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~l~~L~~L~Ls~N~l~--~lp~-~l~~l~~L~~ 241 (487)
T 3oja_A 181 IYDVKG-----QVVFAKLKTLDLSSNKLAFM-----------GPEFQSAAGVTWISLRNNKLV--LIEK-ALRFSQNLEH 241 (487)
T ss_dssp CCEEEC-----CCCCTTCCEEECCSSCCCEE-----------CGGGGGGTTCSEEECTTSCCC--EECT-TCCCCTTCCE
T ss_pred cccccc-----cccCCCCCEEECCCCCCCCC-----------CHhHcCCCCccEEEecCCcCc--ccch-hhccCCCCCE
Confidence 998752 22344455567888877543 3457778 9999999999993 1111 1355677776
Q ss_pred cc
Q 005381 693 LD 694 (699)
Q Consensus 693 LD 694 (699)
||
T Consensus 242 L~ 243 (487)
T 3oja_A 242 FD 243 (487)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=3.2e-11 Score=118.40 Aligned_cols=117 Identities=23% Similarity=0.255 Sum_probs=95.4
Q ss_pred eEEccCCCCCcccCCCCCcccCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCC
Q 005381 537 CLQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIG 615 (699)
Q Consensus 537 ~L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~ 615 (699)
.+++++|.++.+|.- -.++|+.|+|++|.|+.+|. |..+++|+.|+|++|.|+.+. +..|..+++|+.|+|++|+|+
T Consensus 14 ~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp EEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCC
T ss_pred EEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCccC
Confidence 389999999988831 23689999999999999988 999999999999999999973 467899999999999999999
Q ss_pred CCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCcccccc
Q 005381 616 AHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 616 ~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~LD 694 (699)
.++ +..|..+ +|+.|+|++|.|. .+....+..+++|+.||
T Consensus 92 ~i~-------------------------------------~~~f~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 92 CIP-------------------------------------PRTFDGLKSLRLLSLHGNDIS--VVPEGAFNDLSALSHLA 132 (193)
T ss_dssp BCC-------------------------------------TTTTTTCTTCCEEECCSSCCC--BCCTTTTTTCTTCCEEE
T ss_pred EeC-------------------------------------HHHhCCCCCCCEEECCCCCCC--eeChhhhhcCccccEEE
Confidence 885 2356777 9999999999992 11222345677777665
No 127
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.21 E-value=1.2e-09 Score=106.27 Aligned_cols=169 Identities=12% Similarity=-0.050 Sum_probs=147.7
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhh-hccCCCCchhhhhhHHHHHHHHHHHHH--hCCCChHHHHH
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHK-LTENDSDPDSLKSILDEELRVVESALR--QNFKSYGAWHH 110 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l-~~~~~~~~~~~~~~~~eEL~~~~~~L~--~nPKsy~aW~h 110 (699)
....|.+ ++|++.+.+++..+|++..+|...+.++... +. +++++..+++++. .+|....+|..
T Consensus 52 ~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~~ 118 (225)
T 2vq2_A 52 YQYLKVN-DKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR------------PAESMAYFDKALADPTYPTPYIANLN 118 (225)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC------------HHHHHHHHHHHHTSTTCSCHHHHHHH
T ss_pred HHHcCCh-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc------------HHHHHHHHHHHHcCcCCcchHHHHHH
Confidence 3456666 8999999999999999999999999999887 65 8999999999999 77888999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhh
Q 005381 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNF-SNYSAWHNRSLLLSNLL 189 (699)
Q Consensus 111 R~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~-sN~SAW~~R~~ll~~l~ 189 (699)
.+.++... +.+++++++++++++.+|.+..+|...+.+....+.+ ++.+++++++++.+| .+..+|.....+....+
T Consensus 119 l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (225)
T 2vq2_A 119 KGICSAKQ-GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL-GDADYYFKKYQSRVEVLQADDLLLGWKIAKALG 196 (225)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 99999887 6999999999999999999999999999999999998 789999999999999 88888876666555443
Q ss_pred hhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005381 190 KRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (699)
Q Consensus 190 ~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~ 229 (699)
. .+++..++..+...+|++..++.++.+
T Consensus 197 ~------------~~~a~~~~~~~~~~~p~~~~~~~~l~~ 224 (225)
T 2vq2_A 197 N------------AQAAYEYEAQLQANFPYSEELQTVLTG 224 (225)
T ss_dssp C------------HHHHHHHHHHHHHHCTTCHHHHHHHC-
T ss_pred c------------HHHHHHHHHHHHHhCCCCHHHHHHhcc
Confidence 2 578888888888899999999877643
No 128
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.20 E-value=1.2e-09 Score=109.32 Aligned_cols=166 Identities=8% Similarity=-0.110 Sum_probs=151.0
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHH--hCCCChHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR--QNFKSYGAWHHRK 112 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~--~nPKsy~aW~hR~ 112 (699)
...|.+ ++|++.+.+++..+|++..+|...+.++...+. +++++..+++++. .+|.+..+|...+
T Consensus 82 ~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~~la 148 (252)
T 2ho1_A 82 QTEMEP-KLADEEYRKALASDSRNARVLNNYGGFLYEQKR------------YEEAYQRLLEASQDTLYPERSRVFENLG 148 (252)
T ss_dssp HHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred HHcCCH-HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhH------------HHHHHHHHHHHHhCccCcccHHHHHHHH
Confidence 445666 899999999999999999999999999888765 8999999999999 8999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhh
Q 005381 113 WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (699)
Q Consensus 113 w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~ 192 (699)
.++... +.+++++++++++++.+|.+..+|...+.+....+.+ +++++++.++++.+|.+..+|...+.+....+.
T Consensus 149 ~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-- 224 (252)
T 2ho1_A 149 LVSLQM-KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY-VPARQYYDLFAQGGGQNARSLLLGIRLAKVFED-- 224 (252)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC--
T ss_pred HHHHHc-CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC--
Confidence 999877 6999999999999999999999999999999999988 789999999999999999999988888776644
Q ss_pred ccCccchhchHHHHHHHHHHHHHhCCCCchhHHHH
Q 005381 193 VEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYH 227 (699)
Q Consensus 193 ~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~ 227 (699)
++++++.+.+++..+|++..++.++
T Consensus 225 ----------~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 225 ----------RDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp ----------HHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 7899999999999999999988764
No 129
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=5.8e-12 Score=150.56 Aligned_cols=150 Identities=20% Similarity=0.200 Sum_probs=83.0
Q ss_pred EEccCCCCCccc-CCCCCcc-cCEEEccCCCCCCCcC-Cccccc--cceeecccCCCCCCCC--Ccccc--ccccccccc
Q 005381 538 LQLKNLSLSRLG-SFDKLLW-VQMLDLSHNELRSIEG-LEALQL--LSCLNLSNNILGSFTA--LEPIR--QLKSLRALN 608 (699)
Q Consensus 538 L~Ls~n~l~~l~-~l~~L~~-L~~LdLS~N~L~~l~~-l~~L~~--L~~L~Ls~N~l~~l~~--~~~l~--~l~~L~~L~ 608 (699)
|+|++|.++.++ .+..+++ |+.|+|++|.|+.+|. +..+.. |+.|+|++|.|++... +..+. .+++|+.|+
T Consensus 600 L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp EECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred EECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 667777766665 5666666 7777777777766666 544433 6777777777655310 01111 234677777
Q ss_pred cccccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHh-hc
Q 005381 609 ISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLI-KV 686 (699)
Q Consensus 609 Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~-~~ 686 (699)
|++|.|+.+|...+ ..++.+..+++++|.+..+..... ...+..+.++ +|+.|+|++|.|. .++..+. ..
T Consensus 680 Ls~N~L~~lp~~~~---~~l~~L~~L~Ls~N~L~~ip~~~~---~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~ 751 (876)
T 4ecn_A 680 LSYNEIQKFPTELF---ATGSPISTIILSNNLMTSIPENSL---KPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATT 751 (876)
T ss_dssp CCSSCCCSCCHHHH---HTTCCCSEEECCSCCCSCCCTTSS---SCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTT
T ss_pred ccCCcCCccCHHHH---ccCCCCCEEECCCCcCCccChHHh---ccccccccccCCccEEECCCCCCc--cchHHhhhcc
Confidence 77777776653222 122233334666666653322100 0001123456 8999999999993 1212221 36
Q ss_pred CCccccccC
Q 005381 687 LPGLKWLDG 695 (699)
Q Consensus 687 l~~L~~LD~ 695 (699)
+++|+.||-
T Consensus 752 l~~L~~L~L 760 (876)
T 4ecn_A 752 LPYLSNMDV 760 (876)
T ss_dssp CTTCCEEEC
T ss_pred CCCcCEEEe
Confidence 788887763
No 130
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.20 E-value=4.5e-11 Score=135.48 Aligned_cols=115 Identities=24% Similarity=0.229 Sum_probs=64.8
Q ss_pred EEccCCCCCccc-CCCCCcccCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCC
Q 005381 538 LQLKNLSLSRLG-SFDKLLWVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIG 615 (699)
Q Consensus 538 L~Ls~n~l~~l~-~l~~L~~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~ 615 (699)
|++++|.++.++ .+..+++|+.|++++|.++.+|. + .++|+.|++++|+|+++ ...+++|+.|+|++|+|+
T Consensus 392 L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~-----~~~l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 392 LDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSF-----SLFLPRLQELYISRNKLK 464 (549)
T ss_dssp EECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCC-----CCCCTTCCEEECCSSCCS
T ss_pred EECCCCCCccCChhhcccccccEEECCCCCcccccchh--cCCceEEECCCCChhhh-----cccCChhcEEECCCCccC
Confidence 555555555544 44455555555555555555544 2 13455555555555543 135667777777777777
Q ss_pred CCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 616 AHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 616 ~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
.+|. .. .++.+..+++++|.++.+. |..|..+ +|+.|+|++|++
T Consensus 465 ~ip~--~~---~l~~L~~L~Ls~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 465 TLPD--AS---LFPVLLVMKISRNQLKSVP----------DGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp SCCC--GG---GCTTCCEEECCSSCCCCCC----------TTGGGGCTTCCEEECCSSCB
T ss_pred cCCC--cc---cCccCCEEecCCCccCCcC----------HHHHhcCcccCEEEecCCCc
Confidence 6652 11 2233344466666654322 3456677 788888888887
No 131
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.20 E-value=1.7e-11 Score=138.85 Aligned_cols=102 Identities=23% Similarity=0.207 Sum_probs=72.4
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
|+|++|.++.++ .|..+++|++|+|++|.++.+++ |..+++|+.|++++|.++.+..+..++.+++|+.|++++|.
T Consensus 55 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 55 LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred EECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence 888888888665 67888888888888888877765 88888888888888888766545667888888888888887
Q ss_pred -CCCCCcccccccCCCCCcccccCCCCccc
Q 005381 614 -IGAHSIDTTKYLCSSPLSHSVGSEWNHGQ 642 (699)
Q Consensus 614 -I~~lp~~~~~~l~~l~ll~ll~l~~N~l~ 642 (699)
++.+|.. .+..++-+..+++.+|.+.
T Consensus 135 ~~~~~~~~---~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 135 TFSEIRRI---DFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp SCCEECTT---TTTTCCEEEEEEEEETTCC
T ss_pred cccccCHh---hhhcccccCeeeccCCccc
Confidence 5655422 2333333444455555554
No 132
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.20 E-value=1e-09 Score=114.66 Aligned_cols=170 Identities=15% Similarity=0.008 Sum_probs=152.9
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCC---CChHHHHH
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF---KSYGAWHH 110 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nP---Ksy~aW~h 110 (699)
....|.+ ++|+..+.+++..+|++..+|...+.++...+. +++++..+++++..+| ++..+|..
T Consensus 47 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 47 FLAMGKS-KAALPDLTKVIALKMDFTAARLQRGHLLLKQGK------------LDEAEDDFKKVLKSNPSEQEEKEAESQ 113 (359)
T ss_dssp HHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHccCH-HHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCC------------hHHHHHHHHHHHhcCCcccChHHHHHH
Confidence 3456666 799999999999999999999999999998865 8999999999999999 99999987
Q ss_pred HH------------HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHH
Q 005381 111 RK------------WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAW 178 (699)
Q Consensus 111 R~------------w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW 178 (699)
.+ .++... +.+++++++++++++.+|.+..+|..++.+....+.+ ++.++++.++++.+|.+..+|
T Consensus 114 l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~ 191 (359)
T 3ieg_A 114 LVKADEMQRLRSQALDAFDG-ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEP-RKAISDLKAASKLKSDNTEAF 191 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHH
Confidence 73 455545 6899999999999999999999999999999999998 689999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005381 179 HNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (699)
Q Consensus 179 ~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~L 230 (699)
...+.+....+. ++++++.+.+++..+|++..+|.++..+
T Consensus 192 ~~la~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 192 YKISTLYYQLGD------------HELSLSEVRECLKLDQDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCC------------HHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 999999887754 7999999999999999999999876543
No 133
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.20 E-value=2.3e-11 Score=135.59 Aligned_cols=77 Identities=32% Similarity=0.465 Sum_probs=42.3
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAH 617 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~l 617 (699)
|++++|.++.++.+..+++|+.|++++|.++.++++..+++|+.|++++|+++++ ..+..+++|+.|+|++|+++.+
T Consensus 248 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 248 LDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp EECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC---GGGGGCTTCSEEECCSSCCSCC
T ss_pred EECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCc---hhhcCCCCCCEEECcCCcCCCc
Confidence 5555555555444555555555555555555554455555555555555555544 2245555555555555555554
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=5.6e-11 Score=116.43 Aligned_cols=121 Identities=20% Similarity=0.189 Sum_probs=85.9
Q ss_pred EEccCCCCCcccC-CCCCcccCEEEccCCCCCCCcC---CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLGS-FDKLLWVQMLDLSHNELRSIEG---LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~~-l~~L~~L~~LdLS~N~L~~l~~---l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
+++++|.++.+|. +. .+|+.|+|++|.|+.++. |..+++|+.|+|++|.|+++ .+..|..+++|+.|+|++|+
T Consensus 13 l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 13 VDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC
T ss_pred EEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCc
Confidence 7778888777762 32 377888888888877664 67778888888888888776 34667777888888888888
Q ss_pred CCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 614 IGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 614 I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
|+.++... +..++-+..+++++|.+..+. |..|..+ +|+.|+|++|++
T Consensus 90 l~~~~~~~---~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 90 IKEISNKM---FLGLHQLKTLNLYDNQISCVM----------PGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCEECSSS---STTCTTCCEEECCSSCCCEEC----------TTSSTTCTTCCEEECTTCCB
T ss_pred CCccCHHH---hcCCCCCCEEECCCCcCCeeC----------HHHhhcCCCCCEEEeCCCCc
Confidence 87775322 333344444566777665432 4578888 999999999999
No 135
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.19 E-value=5.8e-11 Score=132.33 Aligned_cols=137 Identities=20% Similarity=0.249 Sum_probs=63.4
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccc-cCCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYN-EIGA 616 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N-~I~~ 616 (699)
|++++|.++.++ +..+++|++|++++|.++.++ +..+++|+.|++++|.|++++ ++.+++|+.|++++| .++.
T Consensus 90 L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~ 163 (457)
T 3bz5_A 90 LACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITK 163 (457)
T ss_dssp EECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCC
T ss_pred EECcCCCCceee-cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcccc
Confidence 555555555443 445555555555555554443 455555555555555555431 344444555555444 2333
Q ss_pred CCcccccccCCCCCcccccCCCCccceeecC----------CcchhhhhhccCCCC-CccEEEecCCCC-CCccchHHHh
Q 005381 617 HSIDTTKYLCSSPLSHSVGSEWNHGQTVIDD----------DIKSYWEAYFILKGL-NLTQFDIVGNAI-VNEKFKSFLI 684 (699)
Q Consensus 617 lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~----------~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~~~~~~~~~ 684 (699)
++ +..++-+..+++++|.+..+... ..+.+... .+..+ +|+.|+|++|.+ ..+ +
T Consensus 164 ~~------~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip------~ 229 (457)
T 3bz5_A 164 LD------VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID------V 229 (457)
T ss_dssp CC------CTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC------C
T ss_pred cc------cccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC------c
Confidence 22 11222222334444444332111 11111111 25566 777777777777 221 3
Q ss_pred hcCCcccccc
Q 005381 685 KVLPGLKWLD 694 (699)
Q Consensus 685 ~~l~~L~~LD 694 (699)
..+++|+.||
T Consensus 230 ~~l~~L~~L~ 239 (457)
T 3bz5_A 230 TPLTQLTYFD 239 (457)
T ss_dssp TTCTTCSEEE
T ss_pred cccCCCCEEE
Confidence 4566666655
No 136
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.19 E-value=1.4e-11 Score=141.56 Aligned_cols=122 Identities=19% Similarity=0.198 Sum_probs=66.8
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCC--CcC-CccccccceeecccCCCCCCCCCccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRS--IEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYN 612 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~--l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N 612 (699)
|++++|.++... .+..+++|+.|++++|.++. +|. +..+++|+.|++++|.++++ .+..+..+++|+.|+|++|
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI-SWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSS
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc-ChhhhcccccCCEEECCCC
Confidence 666666655432 45566666666666666643 344 66666666666666666554 2344556666666666666
Q ss_pred cCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC--CccEEEecCCCC
Q 005381 613 EIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL--NLTQFDIVGNAI 674 (699)
Q Consensus 613 ~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L--~L~~LdLs~N~l 674 (699)
+++.++ +..+..++-+..+++++|.++.+ |..+..+ +|+.|++++|++
T Consensus 508 ~l~~~~---~~~~~~l~~L~~L~l~~N~l~~~-----------p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 508 NLLFLD---SSHYNQLYSLSTLDCSFNRIETS-----------KGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CCSCEE---GGGTTTCTTCCEEECTTSCCCCE-----------ESCGGGSCTTCCEEECCSCCC
T ss_pred cCCCcC---HHHccCCCcCCEEECCCCcCccc-----------CHhHhhhcccCcEEEccCCCc
Confidence 665552 22333333334445555555322 3334444 366777777766
No 137
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.18 E-value=1.6e-11 Score=141.04 Aligned_cols=144 Identities=22% Similarity=0.305 Sum_probs=69.8
Q ss_pred EEccCCCCC-ccc--CCCCCcccCEEEccCCCCCCCc---C-CccccccceeecccCCCCCCCCCccccccccccccccc
Q 005381 538 LQLKNLSLS-RLG--SFDKLLWVQMLDLSHNELRSIE---G-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNIS 610 (699)
Q Consensus 538 L~Ls~n~l~-~l~--~l~~L~~L~~LdLS~N~L~~l~---~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls 610 (699)
|++++|.+. .++ .+..+++|+.|++++|.++.++ . +..+++|+.|++++|.++++ .+..+..+++|+.|+++
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECPQLELLDLA 408 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE-CTTTTTTCTTCSEEECT
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC-CHHHhcCCccCCeEECC
Confidence 444444443 222 2444555555555555554332 2 45555555555555555443 22344455555555555
Q ss_pred cccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccc-hHHHhhcCC
Q 005381 611 YNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKF-KSFLIKVLP 688 (699)
Q Consensus 611 ~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~-~~~~~~~l~ 688 (699)
+|.++..+. ...+..++.+..+++++|.+.. ..|..+..+ +|+.|+|++|++....+ ....+..++
T Consensus 409 ~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 476 (606)
T 3t6q_A 409 FTRLKVKDA--QSPFQNLHLLKVLNLSHSLLDI----------SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476 (606)
T ss_dssp TCCEECCTT--CCTTTTCTTCCEEECTTCCCBT----------TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT
T ss_pred CCcCCCccc--chhhhCcccCCEEECCCCccCC----------cCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC
Confidence 555544321 1112222223333444444322 234567778 88888888888831111 112245677
Q ss_pred cccccc
Q 005381 689 GLKWLD 694 (699)
Q Consensus 689 ~L~~LD 694 (699)
+|+.||
T Consensus 477 ~L~~L~ 482 (606)
T 3t6q_A 477 RLEILV 482 (606)
T ss_dssp TCCEEE
T ss_pred CccEEE
Confidence 787765
No 138
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.18 E-value=6.4e-10 Score=114.95 Aligned_cols=171 Identities=10% Similarity=0.017 Sum_probs=91.4
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~ 114 (699)
...|.+ ++|+.++.+++..+|++..+|..++.+....+. +++++..+++++..+|++..+|...+.+
T Consensus 32 ~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 32 LKLANL-AEAALAFEAVCQAAPEREEAWRSLGLTQAENEK------------DGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp HHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 344444 566666666666666666666666655555543 5566666666666666666666666555
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCC-------------------------------------------------ChhhhhH
Q 005381 115 LSKGHSSIDNELRLLDKFQKADSR-------------------------------------------------NFHAWNY 145 (699)
Q Consensus 115 L~~~~~~~~~EL~~~~k~L~~dpr-------------------------------------------------N~haW~y 145 (699)
+... +.++++++.++++++.+|. +..+|..
T Consensus 99 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNE-HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHT-TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 5544 3455555555555555544 4444444
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHH
Q 005381 146 RRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (699)
Q Consensus 146 R~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~ 225 (699)
.+.+....+.+ ++.++++.++++.+|.+..+|..++.++...+. ++++++.+.+++..+|++..+|+
T Consensus 178 la~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~ 244 (327)
T 3cv0_A 178 LGVLYNLSNNY-DSAAANLRRAVELRPDDAQLWNKLGATLANGNR------------PQEALDAYNRALDINPGYVRVMY 244 (327)
T ss_dssp HHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhccH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCCHHHHH
Confidence 44444444444 344455555555555555555555544444322 45555555555555555555555
Q ss_pred HHHHHHc
Q 005381 226 YHLWLLD 232 (699)
Q Consensus 226 Y~~~Ll~ 232 (699)
.+..++.
T Consensus 245 ~l~~~~~ 251 (327)
T 3cv0_A 245 NMAVSYS 251 (327)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
No 139
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.18 E-value=1.8e-11 Score=128.94 Aligned_cols=175 Identities=16% Similarity=0.088 Sum_probs=114.5
Q ss_pred HhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCccc--CCCCCcccCEE
Q 005381 483 ELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLG--SFDKLLWVQML 560 (699)
Q Consensus 483 ~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~--~l~~L~~L~~L 560 (699)
..+.+|++||+++|.+....... . ......+.+++. |+|++|.++.++ .+..+++|++|
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~----------~--~~~~~~~~~L~~-------L~Ls~n~l~~~~~~~~~~l~~L~~L 174 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWL----------A--ELQQWLKPGLKV-------LSIAQAHSPAFSCEQVRAFPALTSL 174 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSH----------H--HHHTTBCSCCCE-------EEEECCSSCCCCTTSCCCCTTCCEE
T ss_pred ccCCCCCEEEeecccccchhhhh----------H--HHHhhhccCCCE-------EEeeCCCcchhhHHHhccCCCCCEE
Confidence 67889999999999843211110 0 011122334443 999999998765 78899999999
Q ss_pred EccCCCCCC---CcC---CccccccceeecccCCCCCCCCC-c-cccccccccccccccccCCCC-CcccccccCCCCCc
Q 005381 561 DLSHNELRS---IEG---LEALQLLSCLNLSNNILGSFTAL-E-PIRQLKSLRALNISYNEIGAH-SIDTTKYLCSSPLS 631 (699)
Q Consensus 561 dLS~N~L~~---l~~---l~~L~~L~~L~Ls~N~l~~l~~~-~-~l~~l~~L~~L~Ls~N~I~~l-p~~~~~~l~~l~ll 631 (699)
||++|.+.. ++. +..+++|+.|+|++|+|+.++.. . .++.+++|+.|+|++|+|+.+ |. ....+..++-+
T Consensus 175 ~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~L 253 (310)
T 4glp_A 175 DLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP-SAPRCMWSSAL 253 (310)
T ss_dssp ECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS-CCSSCCCCTTC
T ss_pred ECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh-hHHhccCcCcC
Confidence 999998743 332 47888999999999999765210 0 246778999999999999887 31 22222222344
Q ss_pred ccccCCCCccceeecCCcchhhhhhccCCCCCccEEEecCCCCC-CccchHHHhhcCCcccccc
Q 005381 632 HSVGSEWNHGQTVIDDDIKSYWEAYFILKGLNLTQFDIVGNAIV-NEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 632 ~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L~L~~LdLs~N~l~-~~~~~~~~~~~l~~L~~LD 694 (699)
..+++++|.++.+ |..+.. +|+.|+|++|.|. .+. ...+++|+.||
T Consensus 254 ~~L~Ls~N~l~~l-----------p~~~~~-~L~~L~Ls~N~l~~~~~-----~~~l~~L~~L~ 300 (310)
T 4glp_A 254 NSLNLSFAGLEQV-----------PKGLPA-KLRVLDLSSNRLNRAPQ-----PDELPEVDNLT 300 (310)
T ss_dssp CCEECCSSCCCSC-----------CSCCCS-CCSCEECCSCCCCSCCC-----TTSCCCCSCEE
T ss_pred CEEECCCCCCCch-----------hhhhcC-CCCEEECCCCcCCCCch-----hhhCCCccEEE
Confidence 4457777777532 223321 8999999999993 233 24567777654
No 140
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.17 E-value=2.5e-12 Score=135.74 Aligned_cols=138 Identities=17% Similarity=0.098 Sum_probs=83.4
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCC---CcC---CccccccceeecccCCCCCCCC-C-cccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRS---IEG---LEALQLLSCLNLSNNILGSFTA-L-EPIRQLKSLRAL 607 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~---l~~---l~~L~~L~~L~Ls~N~l~~l~~-~-~~l~~l~~L~~L 607 (699)
|+|++|.++.++ .+..+++|++|+|++|.+.. ++. +..+++|+.|+|++|.|+.++. + ..+..+++|+.|
T Consensus 154 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233 (312)
T ss_dssp EEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE
T ss_pred EEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE
Confidence 777777777655 67777777777777777532 222 3677777777777777764311 0 122355777777
Q ss_pred ccccccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCCCccEEEecCCCC-CCccchHHHhhc
Q 005381 608 NISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGLNLTQFDIVGNAI-VNEKFKSFLIKV 686 (699)
Q Consensus 608 ~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L~L~~LdLs~N~l-~~~~~~~~~~~~ 686 (699)
+|++|+|+..+ ....+..++-+..+++++|.++. +|..+. -+|+.|+|++|.| ..+. +..
T Consensus 234 ~Ls~N~l~~~~--~~~~~~~l~~L~~L~Ls~N~l~~-----------ip~~~~-~~L~~L~Ls~N~l~~~p~-----~~~ 294 (312)
T 1wwl_A 234 DLSHNSLRDAA--GAPSCDWPSQLNSLNLSFTGLKQ-----------VPKGLP-AKLSVLDLSYNRLDRNPS-----PDE 294 (312)
T ss_dssp ECTTSCCCSSC--CCSCCCCCTTCCEEECTTSCCSS-----------CCSSCC-SEEEEEECCSSCCCSCCC-----TTT
T ss_pred ECCCCcCCccc--chhhhhhcCCCCEEECCCCccCh-----------hhhhcc-CCceEEECCCCCCCCChh-----Hhh
Confidence 77777777653 11112222333444666666642 233333 2799999999999 3332 356
Q ss_pred CCcccccc
Q 005381 687 LPGLKWLD 694 (699)
Q Consensus 687 l~~L~~LD 694 (699)
+++|+.||
T Consensus 295 l~~L~~L~ 302 (312)
T 1wwl_A 295 LPQVGNLS 302 (312)
T ss_dssp SCEEEEEE
T ss_pred CCCCCEEe
Confidence 78887665
No 141
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.17 E-value=1.2e-09 Score=114.38 Aligned_cols=179 Identities=8% Similarity=-0.036 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhcc--CCCCchhhhhhHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHhC
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTE--NDSDPDSLKSILDEELRVVESALR-QNFKSYGAWHHRKWILSKG 118 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~--~~~~~~~~~~~~~eEL~~~~~~L~-~nPKsy~aW~hR~w~L~~~ 118 (699)
++|+..++++|..+|.+..+|...+.++...+.. ...+.+.....+++++..+++++. .+|++..+|...+-++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 6899999999999999999999999887643100 001111122335899999999999 7999999999999999877
Q ss_pred CCChHHHHHHHHHHHHhCCCChh-hhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCcc
Q 005381 119 HSSIDNELRLLDKFQKADSRNFH-AWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFV 197 (699)
Q Consensus 119 ~~~~~~EL~~~~k~L~~dprN~h-aW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~ 197 (699)
+.++++.+.++++++++|.+.. +|...+.+....+.+ ++..+.++++++.+|.+..+|.....+-...
T Consensus 113 -~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~--------- 181 (308)
T 2ond_A 113 -MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI-KSGRMIFKKAREDARTRHHVYVTAALMEYYC--------- 181 (308)
T ss_dssp -TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCH-HHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT---------
T ss_pred -CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---------
Confidence 6999999999999999999997 999999998888887 6789999999999999988887544432211
Q ss_pred chhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 198 SKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 198 ~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
.+.++++++.+.+|+..+|++..+|.-+.-++..
T Consensus 182 --~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 182 --SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp --SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 1236899999999999999999999876666544
No 142
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.17 E-value=1e-10 Score=110.33 Aligned_cols=114 Identities=6% Similarity=-0.078 Sum_probs=107.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHH
Q 005381 48 STKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELR 127 (699)
Q Consensus 48 ~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~ 127 (699)
+.+++.++|++..+|+..+.++...++ +++++..+++++..+|++..+|+.++.++... ++++++++
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~------------~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~-g~~~~Ai~ 91 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGR------------IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK-EQFQQAAD 91 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-ccHHHHHH
Confidence 577788999999999999999998876 99999999999999999999999999999988 69999999
Q ss_pred HHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCch
Q 005381 128 LLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (699)
Q Consensus 128 ~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~ 175 (699)
+|+++++++|.|..+|.+.+.++..+|.+ ++++++++++++.+|...
T Consensus 92 ~~~~al~l~P~~~~~~~~lg~~~~~lg~~-~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 92 LYAVAFALGKNDYTPVFHTGQCQLRLKAP-LKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999 789999999999998764
No 143
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.17 E-value=2.3e-09 Score=116.75 Aligned_cols=174 Identities=11% Similarity=-0.022 Sum_probs=122.5
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w 113 (699)
....|.+ ++|+..+.+++..+|++..+|..++.++...+. +++++..+++++..+|++..+|...+.
T Consensus 153 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~l~~ 219 (450)
T 2y4t_A 153 AFGSGDY-TAAIAFLDKILEVCVWDAELRELRAECFIKEGE------------PRKAISDLKAASKLKNDNTEAFYKIST 219 (450)
T ss_dssp HHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------GGGGHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4445666 688888888888888888888888888877754 667777777777777777777777777
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHH------------HHHHHhcCCChHHHHHHHHHHHHhccCchH----H
Q 005381 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYR------------RFVAASMNRSEEDELKYTEDMICNNFSNYS----A 177 (699)
Q Consensus 114 ~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR------------~~vl~~l~~~~e~EL~~~~~~I~~n~sN~S----A 177 (699)
++... +.++++++.++++++.+|.+..+|... +.+....+.+ ++.++++.++++.+|.+.. +
T Consensus 220 ~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~ 297 (450)
T 2y4t_A 220 LYYQL-GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY-TDATSKYESVMKTEPSIAEYTVRS 297 (450)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCcchHHHHHH
Confidence 77765 577777777777777777777776655 5555566666 5677777777777777633 5
Q ss_pred HHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCc
Q 005381 178 WHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (699)
Q Consensus 178 W~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~ 234 (699)
|..++.++..++. ++++++.+.+++..+|++..+|+.+..++...
T Consensus 298 ~~~l~~~~~~~g~------------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 342 (450)
T 2y4t_A 298 KERICHCFSKDEK------------PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE 342 (450)
T ss_dssp HHHHHHHHHTTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCC------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 5555555554433 67777777777777777777777766666543
No 144
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.16 E-value=1.3e-09 Score=123.53 Aligned_cols=181 Identities=7% Similarity=-0.036 Sum_probs=97.2
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCC----------CCch------------hhhhhHHHHHHH
Q 005381 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND----------SDPD------------SLKSILDEELRV 93 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~----------~~~~------------~~~~~~~eEL~~ 93 (699)
..|.+ ++|++++.+++.++|++..+|+....++...++..+ ..|+ .....+++++..
T Consensus 385 ~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
T 2xpi_A 385 CVNKI-SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEY 463 (597)
T ss_dssp HTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 34444 566666666666666666666665555554433000 0000 000125555555
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh------CCCC-hhhhhHHHHHHHhcCCChHHHHHHHHH
Q 005381 94 VESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA------DSRN-FHAWNYRRFVAASMNRSEEDELKYTED 166 (699)
Q Consensus 94 ~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~------dprN-~haW~yR~~vl~~l~~~~e~EL~~~~~ 166 (699)
+++++..+|++..+|...++++.+. +.+++++++++++++. +|.+ ..+|...+.+....|.+ +++++++++
T Consensus 464 ~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 541 (597)
T 2xpi_A 464 LQSSYALFQYDPLLLNELGVVAFNK-SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY-DAAIDALNQ 541 (597)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH-HHHHHHHHH
Confidence 5555555555555555555555544 3555555555555555 3443 34555555555555555 445555555
Q ss_pred HHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005381 167 MICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 167 ~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll 231 (699)
+++.+|.+..+|...+.++...++ ++++++.+.+++..+|++..+|..+..++
T Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 542 GLLLSTNDANVHTAIALVYLHKKI------------PGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHhCCCChHHHHHHHHHHHHhCC------------HHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 555555555555555555554433 56777777777777777777666655443
No 145
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.16 E-value=1.4e-10 Score=114.52 Aligned_cols=140 Identities=19% Similarity=0.200 Sum_probs=107.0
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIG 615 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~ 615 (699)
++.+++.++.++. ...++|+.|++++|.++.++. |..+++|+.|++++|+|+.++ +..+..+++|+.|+|++|.|+
T Consensus 12 v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 12 VECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp EECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCC
T ss_pred EEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC-hhhcCCCCCcCEEECCCCcCC
Confidence 8889999988872 235689999999999988887 889999999999999999873 355789999999999999999
Q ss_pred CCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCcccccc
Q 005381 616 AHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 616 ~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~LD 694 (699)
.++... +..++.+..+++++|.+..+. +..|..+ +|+.|+|++|.|. .+....+..+++|+.||
T Consensus 90 ~~~~~~---~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 90 SLPNGV---FDKLTQLKELALNTNQLQSLP----------DGVFDKLTQLKDLRLYQNQLK--SVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp CCCTTT---TTTCTTCCEEECCSSCCCCCC----------TTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEE
T ss_pred ccCHhH---hcCccCCCEEEcCCCcCcccC----------HhHhccCCcCCEEECCCCccc--eeCHHHhccCCCccEEE
Confidence 886322 344444555677777775432 2357888 9999999999992 11122345677787765
No 146
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.16 E-value=5e-11 Score=112.47 Aligned_cols=117 Identities=7% Similarity=-0.089 Sum_probs=109.8
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHh
Q 005381 91 LRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICN 170 (699)
Q Consensus 91 L~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~ 170 (699)
-..+.+++..+|++..+|+.++.++.+. +++++++.+++++++++|.|..+|...+.++..++.+ ++++++++++++.
T Consensus 22 ~~~l~~al~l~p~~~~~~~~lg~~~~~~-g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~-~~Ai~~~~~al~l 99 (151)
T 3gyz_A 22 GATLKDINAIPDDMMDDIYSYAYDFYNK-GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF-QQAADLYAVAFAL 99 (151)
T ss_dssp SCCTGGGCCSCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHH
T ss_pred CCCHHHHhCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccH-HHHHHHHHHHHhh
Confidence 3467788899999999999999999987 6999999999999999999999999999999999999 7899999999999
Q ss_pred ccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCc
Q 005381 171 NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (699)
Q Consensus 171 n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~ 221 (699)
+|.|..+|++++.++..+++ ++++++++++|+..+|+..
T Consensus 100 ~P~~~~~~~~lg~~~~~lg~------------~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 100 GKNDYTPVFHTGQCQLRLKA------------PLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSSCCHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCCCHH
T ss_pred CCCCcHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCHH
Confidence 99999999999999998866 8999999999999999865
No 147
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.16 E-value=2.8e-11 Score=122.38 Aligned_cols=138 Identities=20% Similarity=0.158 Sum_probs=69.6
Q ss_pred EEccCCC-CCccc--CCCCCcccCEEEccC-CCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccc---ccc
Q 005381 538 LQLKNLS-LSRLG--SFDKLLWVQMLDLSH-NELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLR---ALN 608 (699)
Q Consensus 538 L~Ls~n~-l~~l~--~l~~L~~L~~LdLS~-N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~---~L~ 608 (699)
|++++|. ++.++ .|..+++|++|++++ |.++.++. |..+++|+.|++++|.+++++ . +..+++|+ .|+
T Consensus 60 L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp--~-~~~l~~L~~L~~L~ 136 (239)
T 2xwt_C 60 IYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP--D-LTKVYSTDIFFILE 136 (239)
T ss_dssp EEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCC--C-CTTCCBCCSEEEEE
T ss_pred EeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccc--c-cccccccccccEEE
Confidence 5555554 55444 455555566666655 55555543 555555666666666555542 1 44444444 566
Q ss_pred cccc-cCCCCCcccccccCCCCCcc-cccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCC-CCCccchHHHh
Q 005381 609 ISYN-EIGAHSIDTTKYLCSSPLSH-SVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNA-IVNEKFKSFLI 684 (699)
Q Consensus 609 Ls~N-~I~~lp~~~~~~l~~l~ll~-ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~-l~~~~~~~~~~ 684 (699)
+++| .|+.+|... +..++.+. .+++++|.+..+ |...... +|+.|+|++|+ +. .+....+
T Consensus 137 l~~N~~l~~i~~~~---~~~l~~L~~~L~l~~n~l~~i-----------~~~~~~~~~L~~L~L~~n~~l~--~i~~~~~ 200 (239)
T 2xwt_C 137 ITDNPYMTSIPVNA---FQGLCNETLTLKLYNNGFTSV-----------QGYAFNGTKLDAVYLNKNKYLT--VIDKDAF 200 (239)
T ss_dssp EESCTTCCEECTTT---TTTTBSSEEEEECCSCCCCEE-----------CTTTTTTCEEEEEECTTCTTCC--EECTTTT
T ss_pred CCCCcchhhcCccc---ccchhcceeEEEcCCCCCccc-----------CHhhcCCCCCCEEEcCCCCCcc--cCCHHHh
Confidence 6655 555554221 22222223 334445544322 2222233 78888888884 62 1111223
Q ss_pred hcC-Ccccccc
Q 005381 685 KVL-PGLKWLD 694 (699)
Q Consensus 685 ~~l-~~L~~LD 694 (699)
..+ ++|+.||
T Consensus 201 ~~l~~~L~~L~ 211 (239)
T 2xwt_C 201 GGVYSGPSLLD 211 (239)
T ss_dssp TTCSBCCSEEE
T ss_pred hccccCCcEEE
Confidence 455 6777665
No 148
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=5.5e-12 Score=117.91 Aligned_cols=112 Identities=23% Similarity=0.308 Sum_probs=89.9
Q ss_pred hcccccccCCCCCccc-cchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCCcccCEEEc
Q 005381 484 LYNDLMRLDPTHVQYY-KDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKLLWVQMLDL 562 (699)
Q Consensus 484 ~l~~L~~LDls~n~~~-~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L~~L~~LdL 562 (699)
...+|+.|++++|... .. ++..+..+.+++. |++++|.++.++.+..+++|+.|+|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~----------------~~~~~~~l~~L~~-------L~l~~n~l~~~~~~~~l~~L~~L~L 71 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGK----------------LEGLTDEFEELEF-------LSTINVGLTSIANLPKLNKLKKLEL 71 (149)
T ss_dssp CGGGCSEEECTTCBCBTTB----------------CCSCCTTCTTCCE-------EECTTSCCCCCTTCCCCTTCCEEEC
T ss_pred CCccCeEEEccCCcCChhH----------------HHHHHhhcCCCcE-------EECcCCCCCCchhhhcCCCCCEEEC
Confidence 3478999999999822 11 1112223334333 9999999998888999999999999
Q ss_pred cCCCCCC-CcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCC
Q 005381 563 SHNELRS-IEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHS 618 (699)
Q Consensus 563 S~N~L~~-l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp 618 (699)
++|.++. +|. +..+++|+.|++++|.|++++.+..+..+++|+.|++++|+++.+|
T Consensus 72 s~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp CSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred CCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 9999977 777 7789999999999999998643467899999999999999998875
No 149
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.15 E-value=6.4e-11 Score=137.98 Aligned_cols=142 Identities=23% Similarity=0.304 Sum_probs=98.7
Q ss_pred EEccCCCCCcc---c-CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCC-------CCccccccccc
Q 005381 538 LQLKNLSLSRL---G-SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFT-------ALEPIRQLKSL 604 (699)
Q Consensus 538 L~Ls~n~l~~l---~-~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~-------~~~~l~~l~~L 604 (699)
|++++|.++.+ + .+..+++|+.|+|++|.++.+++ |..+++|+.|+|++|.++.+. .+..+..+++|
T Consensus 459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L 538 (680)
T 1ziw_A 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538 (680)
T ss_dssp EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred chhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC
Confidence 77888777633 3 67788888899999888887776 888888899999988887642 11236778888
Q ss_pred cccccccccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHH
Q 005381 605 RALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFL 683 (699)
Q Consensus 605 ~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~ 683 (699)
+.|+|++|+|+.+|... +..++-+..+++++|.++.+. +..|..+ +|+.|+|++|.|. ......
T Consensus 539 ~~L~L~~N~l~~i~~~~---~~~l~~L~~L~Ls~N~l~~l~----------~~~~~~l~~L~~L~L~~N~l~--~~~~~~ 603 (680)
T 1ziw_A 539 HILNLESNGFDEIPVEV---FKDLFELKIIDLGLNNLNTLP----------ASVFNNQVSLKSLNLQKNLIT--SVEKKV 603 (680)
T ss_dssp CEEECCSSCCCCCCTTT---TTTCTTCCEEECCSSCCCCCC----------TTTTTTCTTCCEEECTTSCCC--BCCHHH
T ss_pred CEEECCCCCCCCCCHHH---cccccCcceeECCCCCCCcCC----------HhHhCCCCCCCEEECCCCcCC--ccChhH
Confidence 99999999888886433 333444445567777775432 2457788 9999999999993 122222
Q ss_pred hh-cCCcccccc
Q 005381 684 IK-VLPGLKWLD 694 (699)
Q Consensus 684 ~~-~l~~L~~LD 694 (699)
+. .+++|+.||
T Consensus 604 ~~~~~~~L~~l~ 615 (680)
T 1ziw_A 604 FGPAFRNLTELD 615 (680)
T ss_dssp HHHHHTTCSEEE
T ss_pred hcccccccCEEE
Confidence 22 456666554
No 150
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.15 E-value=7.9e-10 Score=114.25 Aligned_cols=190 Identities=16% Similarity=0.104 Sum_probs=159.6
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCC----------CCc---------------------
Q 005381 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND----------SDP--------------------- 80 (699)
Q Consensus 32 ~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~----------~~~--------------------- 80 (699)
......|.+ ++|+..+.+++..+|++..+|...+.++...+...+ .+|
T Consensus 63 ~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 63 LTQAENEKD-GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNV 141 (327)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------------
T ss_pred HHHHHcCCH-HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHH
Confidence 334455666 789999999999999999999888877765532100 000
Q ss_pred ------hhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcC
Q 005381 81 ------DSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMN 154 (699)
Q Consensus 81 ------~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~ 154 (699)
-.....+++++..+++++..+|.+..+|...+.++... +.+++++++++++++.+|.+..+|...+.+....+
T Consensus 142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 142 QSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS-NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp ----CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 11224578999999999999999999999999999887 69999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCC------------Cch
Q 005381 155 RSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD------------DQS 222 (699)
Q Consensus 155 ~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~------------d~S 222 (699)
.+ +++++++.++++.+|.+..+|...+.+....+. ++++++.+.+++..+|+ +..
T Consensus 221 ~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 287 (327)
T 3cv0_A 221 RP-QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ------------YDLAAKQLVRAIYMQVGGTTPTGEASREATRS 287 (327)
T ss_dssp CH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHTTSCC-----CCTHHHH
T ss_pred CH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc------------HHHHHHHHHHHHHhCCccccccccchhhcCHH
Confidence 88 789999999999999999999999998887744 79999999999999999 788
Q ss_pred hHHHHHHHHcCcCC
Q 005381 223 GWFYHLWLLDQTVR 236 (699)
Q Consensus 223 aW~Y~~~Ll~~~~~ 236 (699)
+|..+..++....+
T Consensus 288 ~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 288 MWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCC
Confidence 99988888866544
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.15 E-value=1e-10 Score=112.27 Aligned_cols=98 Identities=22% Similarity=0.276 Sum_probs=84.6
Q ss_pred eEEccCCCCCccc-CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 537 CLQLKNLSLSRLG-SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 537 ~L~Ls~n~l~~l~-~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
.+++++|.++.+| .+ .++|+.|+|++|.|+.+++ |..+++|+.|+|++|+|+.++ +..|..+++|+.|+|++|+
T Consensus 13 ~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCc
Confidence 3999999999988 33 3889999999999988865 999999999999999999873 3567899999999999999
Q ss_pred CCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 614 IGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 614 I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
|+.+|. ..|..+ +|+.|+|++|++
T Consensus 90 l~~~~~-------------------------------------~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 LKSIPR-------------------------------------GAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCT-------------------------------------TTTTTCTTCCEEECCSSCB
T ss_pred cCEeCH-------------------------------------HHhcCCCCCCEEEeCCCCC
Confidence 998852 246667 899999999999
No 152
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.15 E-value=2.4e-11 Score=128.53 Aligned_cols=120 Identities=14% Similarity=0.117 Sum_probs=59.6
Q ss_pred cccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccc-cccccccccccccccCCCCCcccccccCCCCCc
Q 005381 555 LWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPI-RQLKSLRALNISYNEIGAHSIDTTKYLCSSPLS 631 (699)
Q Consensus 555 ~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l-~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll 631 (699)
++|+.|++++|.++.+++ +..+++|+.|+|++|.|+++. +..+ ..+++|+.|+|++|.|+.++. . ..++-+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~--~---~~l~~L 193 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAASSDTLEHLNLQYNFIYDVKG--Q---VVFAKL 193 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE-GGGGGGGTTTCCEEECTTSCCCEEEC--C---CCCTTC
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc-HHHHhhccCcCCEEECCCCcCccccc--c---cccccC
Confidence 344444444444444433 444555555555555554431 1222 234555555555555544421 0 112222
Q ss_pred ccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCcccccc
Q 005381 632 HSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 632 ~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~LD 694 (699)
..+++++|.+. .+|..+..+ +|+.|+|++|.|. .+.. .+..+++|+.||
T Consensus 194 ~~L~Ls~N~l~-----------~l~~~~~~l~~L~~L~L~~N~l~--~l~~-~~~~l~~L~~L~ 243 (317)
T 3o53_A 194 KTLDLSSNKLA-----------FMGPEFQSAAGVTWISLRNNKLV--LIEK-ALRFSQNLEHFD 243 (317)
T ss_dssp CEEECCSSCCC-----------EECGGGGGGTTCSEEECTTSCCC--EECT-TCCCCTTCCEEE
T ss_pred CEEECCCCcCC-----------cchhhhcccCcccEEECcCCccc--chhh-HhhcCCCCCEEE
Confidence 22344444443 334457777 8999999999883 1111 235567777765
No 153
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.15 E-value=2.8e-11 Score=127.59 Aligned_cols=122 Identities=18% Similarity=0.147 Sum_probs=94.2
Q ss_pred CeEEccCCCCCcc----c--CCCCCcccCEEEccCCCCCCCcC-----CccccccceeecccCCCCCCCCCccccccccc
Q 005381 536 MCLQLKNLSLSRL----G--SFDKLLWVQMLDLSHNELRSIEG-----LEALQLLSCLNLSNNILGSFTALEPIRQLKSL 604 (699)
Q Consensus 536 ~~L~Ls~n~l~~l----~--~l~~L~~L~~LdLS~N~L~~l~~-----l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L 604 (699)
+.|++++|.+... + .+..+++|+.|+|++|.|+.++. +..+++|+.|+|++|.|++......+..+++|
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 3499999997642 2 34889999999999999986553 56789999999999999986423556678999
Q ss_pred cccccccccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCC
Q 005381 605 RALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIV 675 (699)
Q Consensus 605 ~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~ 675 (699)
+.|+|++|.|+.+|.... +-+..+++++|.++.+ |. +..+ +|+.|+|++|+|.
T Consensus 256 ~~L~Ls~N~l~~ip~~~~------~~L~~L~Ls~N~l~~~-----------p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 256 NSLNLSFTGLKQVPKGLP------AKLSVLDLSYNRLDRN-----------PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CEEECTTSCCSSCCSSCC------SEEEEEECCSSCCCSC-----------CC-TTTSCEEEEEECTTCTTT
T ss_pred CEEECCCCccChhhhhcc------CCceEEECCCCCCCCC-----------hh-HhhCCCCCEEeccCCCCC
Confidence 999999999998873221 3344457777777432 34 7888 9999999999994
No 154
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.14 E-value=2.3e-09 Score=119.33 Aligned_cols=180 Identities=12% Similarity=0.042 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~ 121 (699)
++|+..+.+++..+|+ ..+|...+.++...+. +++++..+++++..+|++..+|..++.++... +.
T Consensus 260 ~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 325 (537)
T 3fp2_A 260 LDAQVLLQESINLHPT-PNSYIFLALTLADKEN------------SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL-QD 325 (537)
T ss_dssp HHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSC------------CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcC------------HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc-CC
Confidence 4555555566665555 5555555555444432 45555555555555555555555555555544 35
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhc--------
Q 005381 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKV-------- 193 (699)
Q Consensus 122 ~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~-------- 193 (699)
++++++.++++++.+|.+..+|...+.+....|.+ ++.++++.++++.+|.+..+|.+++.++...+....
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKF-TESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55555555555555555555555555555555555 445555555555555555555555555544432100
Q ss_pred -------cCcc-------------chh----------chHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCC
Q 005381 194 -------EGFV-------------SKE----------KVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (699)
Q Consensus 194 -------~~~~-------------~~~----------~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~ 236 (699)
.... ... +.++++++.+.+++..+|++..+|+.+..++....+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 0000 001 558999999999999999999999999988876544
No 155
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.14 E-value=4e-11 Score=136.76 Aligned_cols=74 Identities=22% Similarity=0.335 Sum_probs=42.4
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCc--C-CccccccceeecccCCCCCCCCCccccccccccccccccccC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIE--G-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEI 614 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~--~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I 614 (699)
|+|++|.++.++.. .+++|++|+|++|.++.++ . |.++++|+.|++++|.|+.. ....+..+ +|+.|++++|.+
T Consensus 105 L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~L-~L~~L~L~~n~l 181 (562)
T 3a79_B 105 LDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-DLLPVAHL-HLSCILLDLVSY 181 (562)
T ss_dssp EECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-TTGGGTTS-CEEEEEEEESSC
T ss_pred EECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-chhhhhhc-eeeEEEeecccc
Confidence 66666666666543 5666666666666665543 3 66666666666666666542 11222222 236666666665
No 156
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.13 E-value=7.2e-11 Score=134.18 Aligned_cols=162 Identities=22% Similarity=0.236 Sum_probs=118.1
Q ss_pred HHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHh-hhhccCCCCCCCCCCCCeEEccCCCCCccc--CCCCCc
Q 005381 479 EEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLL-SRCFHYSNSPSNRGSPMCLQLKNLSLSRLG--SFDKLL 555 (699)
Q Consensus 479 ~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~-~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~--~l~~L~ 555 (699)
+..+..+++|++||+++|... .+. ..+..+.+++. |+|++|.++.++ .|.+++
T Consensus 45 ~~~~~~l~~L~~L~Ls~n~i~-----------------~i~~~~~~~l~~L~~-------L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 45 SYSFFSFPELQVLDLSRCEIQ-----------------TIEDGAYQSLSHLST-------LILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp TTTTTTCSSCCEEECTTCCCC-----------------EECTTTTTTCTTCCE-------EECTTCCCCEECTTTTTTCT
T ss_pred hhHhhCCCCceEEECCCCcCC-----------------ccCcccccCchhCCE-------EeCcCCcCCccCHhhhcCcc
Confidence 345677889999999988721 111 11222334333 999999998775 789999
Q ss_pred ccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCc-c
Q 005381 556 WVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLS-H 632 (699)
Q Consensus 556 ~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll-~ 632 (699)
+|++|++++|.++.++. +..+++|+.|++++|.++.+..|..++.+++|+.|++++|.++.++......+..++.. .
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhh
Confidence 99999999999988876 89999999999999999886557888999999999999999988764444444444322 2
Q ss_pred cccCCCCccceeecCCcchhhhhhccCCCCCccEEEecCCCC
Q 005381 633 SVGSEWNHGQTVIDDDIKSYWEAYFILKGLNLTQFDIVGNAI 674 (699)
Q Consensus 633 ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L~L~~LdLs~N~l 674 (699)
.+++++|.+..+. |..+..++|+.|+|++|..
T Consensus 181 ~L~l~~n~l~~~~----------~~~~~~~~L~~L~l~~n~~ 212 (570)
T 2z63_A 181 SLDLSLNPMNFIQ----------PGAFKEIRLHKLTLRNNFD 212 (570)
T ss_dssp EEECTTCCCCEEC----------TTTTTTCEEEEEEEESCCS
T ss_pred hcccCCCCceecC----------HHHhccCcceeEecccccc
Confidence 3466677665433 2344444899999998865
No 157
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.13 E-value=1.2e-10 Score=129.83 Aligned_cols=112 Identities=23% Similarity=0.207 Sum_probs=59.7
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcCCccccccceeecccC----------------------CCCCCCCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNN----------------------ILGSFTAL 595 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N----------------------~l~~l~~~ 595 (699)
|++++|.++.++ +..+++|++|++++|.++.++ +..+++|+.|++++| +|++++
T Consensus 111 L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-- 186 (457)
T 3bz5_A 111 LNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-- 186 (457)
T ss_dssp EECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--
T ss_pred EECCCCcCCeec-CCCCCcCCEEECCCCccceec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--
Confidence 555555555553 555555555555555555443 444445555555554 444431
Q ss_pred ccccccccccccccccccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 596 EPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 596 ~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
+..+++|+.|++++|.|+.++ +..++-+..+++++|.+ ..+| +..+ +|+.|++++|.+
T Consensus 187 --l~~l~~L~~L~l~~N~l~~~~------l~~l~~L~~L~Ls~N~l-----------~~ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTNNITKLD------LNQNIQLTFLDCSSNKL-----------TEID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC------CTTCTTCSEEECCSSCC-----------SCCC--CTTCTTCSEEECCSSCC
T ss_pred --cccCCCCCEEECcCCcCCeec------cccCCCCCEEECcCCcc-----------cccC--ccccCCCCEEEeeCCcC
Confidence 344444555555555544442 11222222234444444 2334 7788 999999999999
No 158
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.13 E-value=6.8e-09 Score=104.64 Aligned_cols=187 Identities=12% Similarity=0.063 Sum_probs=140.7
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 005381 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (699)
Q Consensus 31 ~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~h 110 (699)
.......|.+ ++|+..+.+++..+|++..+|...+.++...+. +++++.++++++..+|++..+|..
T Consensus 50 ~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~~~~~~~~~~ 116 (275)
T 1xnf_A 50 GVLYDSLGLR-ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN------------FDAAYEAFDSVLELDPTYNYAHLN 116 (275)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HHHHHHcccH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC------------HHHHHHHHHHHHhcCccccHHHHH
Confidence 3444567777 799999999999999999999999999988865 999999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhh
Q 005381 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (699)
Q Consensus 111 R~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~ 190 (699)
++.++... +.++++++.++++++.+|.+..+........ ..+.+ ++.++++.+++..+|.+...|......+.....
T Consensus 117 la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (275)
T 1xnf_A 117 RGIALYYG-GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE-QKLDE-KQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE 193 (275)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHCH-HHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCH
T ss_pred HHHHHHHh-ccHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HhcCH-HHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCH
Confidence 99999987 6999999999999999999986665555443 33555 567777778887777776655433322211100
Q ss_pred hh------------c------cC-------ccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 191 RK------------V------EG-------FVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 191 ~~------------~------~~-------~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
.. . .. .....+.++++++.+.+++..+|++...+.+...-+++
T Consensus 194 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~ 261 (275)
T 1xnf_A 194 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSL 261 (275)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 00 0 00 00112347999999999999999998877665555554
No 159
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.13 E-value=3e-09 Score=120.46 Aligned_cols=187 Identities=9% Similarity=0.013 Sum_probs=145.1
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~ 114 (699)
...|.+ ++|++++.+++..+|++..+|+..+.++...+. +++++..+++++..+|++..+|...+.+
T Consensus 350 ~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 416 (597)
T 2xpi_A 350 HESGEK-NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNK------------ISEARRYFSKSSTMDPQFGPAWIGFAHS 416 (597)
T ss_dssp HHHTCH-HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhCCH-HHHHHHHHHHHhhCcccHHHHHHHHHHHHHhcc------------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 455666 799999999999999999999999998888765 7888888888888888888888888877
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhcc
Q 005381 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVE 194 (699)
Q Consensus 115 L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~ 194 (699)
+.+. +.+++++++++++++.+|.+..+|...+.+..+.|.+ ++.+++++++++.+|.+..+|...+.++...+....+
T Consensus 417 ~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 417 FAIE-GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNI-LLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HHHH-TCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 7766 5778888888888888888888888887777777776 5677777777777777777777777776655432100
Q ss_pred --------------Ccc---------------chhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCC
Q 005381 195 --------------GFV---------------SKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (699)
Q Consensus 195 --------------~~~---------------~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~ 236 (699)
+.. ...+.++++++.+++++..+|++..+|..+..++....+
T Consensus 495 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 000 112347999999999999999999999999888866543
No 160
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=1.1e-11 Score=119.52 Aligned_cols=110 Identities=23% Similarity=0.172 Sum_probs=88.7
Q ss_pred hcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCC-CCCCCCCCCCeEEccCCCCCcccCCCCCcccCEEEc
Q 005381 484 LYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYS-NSPSNRGSPMCLQLKNLSLSRLGSFDKLLWVQMLDL 562 (699)
Q Consensus 484 ~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~-~l~~l~L~~~~L~Ls~n~l~~l~~l~~L~~L~~LdL 562 (699)
.+.+|+.|++++|.+. .+. .+..+. +++. |++++|.++.++.+..+++|+.|+|
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~-----------------~~~~~~~~L~~-------L~Ls~N~l~~~~~l~~l~~L~~L~L 71 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIE-----------------NLGATLDQFDA-------IDFSDNEIRKLDGFPLLRRLKTLLV 71 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCC-----------------CGGGGTTCCSE-------EECCSSCCCEECCCCCCSSCCEEEC
T ss_pred CcCCceEEEeeCCCCc-hhH-----------------HhhhcCCCCCE-------EECCCCCCCcccccccCCCCCEEEC
Confidence 4678899999998722 111 111111 3333 9999999999899999999999999
Q ss_pred cCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCC
Q 005381 563 SHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHS 618 (699)
Q Consensus 563 S~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp 618 (699)
++|.|+.+|+ +..+++|+.|+|++|.|+.++....+..+++|+.|++++|+++.+|
T Consensus 72 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~ 129 (176)
T 1a9n_A 72 NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129 (176)
T ss_dssp CSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred CCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH
Confidence 9999999987 6999999999999999988743347889999999999999998875
No 161
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.12 E-value=2.7e-09 Score=107.59 Aligned_cols=165 Identities=12% Similarity=-0.022 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHh----CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 005381 42 KEAVELSTKLLET----NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK 117 (699)
Q Consensus 42 ~eaL~~~~~~L~~----nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~ 117 (699)
++|+..+.+++.. +|.+..+|..++.+....+. +++++..+++++..+|++..+|...+.++..
T Consensus 22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGL------------RALARNDFSQALAIRPDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHccc------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 7999999999998 46788999999999988865 8999999999999999999999999999988
Q ss_pred CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCcc
Q 005381 118 GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFV 197 (699)
Q Consensus 118 ~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~ 197 (699)
. +.+++++++++++++.+|.+..+|...+.+....|.+ ++.++++.++++.+|.+..+....... ...
T Consensus 90 ~-~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~--------- 157 (275)
T 1xnf_A 90 A-GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD-KLAQDDLLAFYQDDPNDPFRSLWLYLA-EQK--------- 157 (275)
T ss_dssp T-TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHH---------
T ss_pred c-cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccH-HHHHHHHHHHHHhCCCChHHHHHHHHH-HHh---------
Confidence 7 6999999999999999999999999999999999998 789999999999999998665544433 222
Q ss_pred chhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 198 SKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 198 ~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
+.+++++..+.+++..+|.+...|......++.
T Consensus 158 ---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (275)
T 1xnf_A 158 ---LDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN 190 (275)
T ss_dssp ---HCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTS
T ss_pred ---cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence 237999999999999999998888766665554
No 162
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.12 E-value=1.3e-10 Score=129.51 Aligned_cols=144 Identities=20% Similarity=0.238 Sum_probs=102.7
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAH 617 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~l 617 (699)
|++++|.++.++.+..+++|+.|++++|.++.++++..+++|+.|++++|.++++ ..+..+++|+.|++++|+++.+
T Consensus 226 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~ 302 (466)
T 1o6v_A 226 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI---SPLAGLTALTNLELNENQLEDI 302 (466)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC---GGGTTCTTCSEEECCSSCCSCC
T ss_pred EECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcc---ccccCCCccCeEEcCCCcccCc
Confidence 9999999998888899999999999999998887788999999999999999886 3378899999999999999887
Q ss_pred CcccccccCCCCCcccccCCCCccceee----------cC-CcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhh
Q 005381 618 SIDTTKYLCSSPLSHSVGSEWNHGQTVI----------DD-DIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIK 685 (699)
Q Consensus 618 p~~~~~~l~~l~ll~ll~l~~N~l~~~~----------~~-~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~ 685 (699)
+. +..++-+..+++++|.+.... ++ .++..... ..+..+ +|+.|++++|++. +..+ +.
T Consensus 303 ~~-----~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~--~~~~--~~ 372 (466)
T 1o6v_A 303 SP-----ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQIS--DLTP--LA 372 (466)
T ss_dssp GG-----GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC--BCGG--GT
T ss_pred hh-----hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccC--ccch--hh
Confidence 52 333334444566666554321 11 11222222 356667 7777888877772 1111 45
Q ss_pred cCCcccccc
Q 005381 686 VLPGLKWLD 694 (699)
Q Consensus 686 ~l~~L~~LD 694 (699)
.+++|+.|+
T Consensus 373 ~l~~L~~L~ 381 (466)
T 1o6v_A 373 NLTRITQLG 381 (466)
T ss_dssp TCTTCCEEE
T ss_pred cCCCCCEEe
Confidence 667776654
No 163
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.11 E-value=6.1e-11 Score=142.07 Aligned_cols=76 Identities=28% Similarity=0.339 Sum_probs=43.5
Q ss_pred EEccCCCCCc-cc---CCCCCcccCEEEccCCCCCCCc--C-CccccccceeecccCCCCCCCCCcccccc--ccccccc
Q 005381 538 LQLKNLSLSR-LG---SFDKLLWVQMLDLSHNELRSIE--G-LEALQLLSCLNLSNNILGSFTALEPIRQL--KSLRALN 608 (699)
Q Consensus 538 L~Ls~n~l~~-l~---~l~~L~~L~~LdLS~N~L~~l~--~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l--~~L~~L~ 608 (699)
|+|++|.++. ++ .+..+++|++|||++|.+..++ . |.++++|+.|+|++|.++++ .+..+..+ ++|+.|+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~-~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV-CEHELEPLQGKTLSFFS 180 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC-CSGGGHHHHHCSSCCCE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee-CHHHcccccCCccceEE
Confidence 6666666664 22 2666677777777777665442 2 66677777777777766554 22334333 4444444
Q ss_pred cccccC
Q 005381 609 ISYNEI 614 (699)
Q Consensus 609 Ls~N~I 614 (699)
|++|.+
T Consensus 181 L~~n~l 186 (844)
T 3j0a_A 181 LAANSL 186 (844)
T ss_dssp ECCSBS
T ss_pred CCCCcc
Confidence 444444
No 164
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.10 E-value=1.9e-09 Score=119.07 Aligned_cols=165 Identities=9% Similarity=-0.060 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~ 121 (699)
++|+..+.+++..+|++..+|...+.++...+ .+++++..+++++..+|.+..+|..++.++... +.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~ 387 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYREN------------KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK-ND 387 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTT------------CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHC-CC
Confidence 45555555555555555555555555554443 377888888888888888888888888888776 57
Q ss_pred hHHHHHHHHHHHHhCCCChh------hhhHHHHHHHh---cCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhh
Q 005381 122 IDNELRLLDKFQKADSRNFH------AWNYRRFVAAS---MNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (699)
Q Consensus 122 ~~~EL~~~~k~L~~dprN~h------aW~yR~~vl~~---l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~ 192 (699)
+++++..++++++.+|.+.. +|..++.+... .|.+ ++.++++.++++.+|.+..+|..++.++...+.
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-- 464 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF-IEATNLLEKASKLDPRSEQAKIGLAQMKLQQED-- 464 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC--
Confidence 88888888888888887755 78888888877 7776 677888888888888888888888877776644
Q ss_pred ccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHc
Q 005381 193 VEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (699)
Q Consensus 193 ~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~ 232 (699)
++++++.+.+++..+|++..+|....++-.
T Consensus 465 ----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 465 ----------IDEAITLFEESADLARTMEEKLQAITFAEA 494 (514)
T ss_dssp ----------HHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 799999999999999999999998777654
No 165
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.10 E-value=4.4e-10 Score=108.12 Aligned_cols=122 Identities=19% Similarity=0.168 Sum_probs=73.8
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIG 615 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~ 615 (699)
++++++.++.++ ....++|+.|++++|.++.++. |..+++|+.|++++|.|+.++ +..+..+++|+.|+|++|.|+
T Consensus 12 l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 12 IRCNSKGLTSVP-TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp EECCSSCCSSCC-TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCC
T ss_pred EEecCCCCccCC-CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCCCcc
Confidence 666666666665 1223566677777776666655 566666777777777666652 234566666777777777666
Q ss_pred CCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 616 AHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 616 ~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
.+|... +..++-+..+++++|.+..+. +..+..+ +|+.|+|++|++
T Consensus 90 ~~~~~~---~~~l~~L~~L~l~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 90 SLPNGV---FDKLTQLKELALDTNQLKSVP----------DGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCTTT---TTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCB
T ss_pred ccCHHH---hhCCcccCEEECcCCcceEeC----------HHHhcCCcccCEEEecCCCe
Confidence 664221 222333333455555553221 2346777 999999999999
No 166
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.09 E-value=2.2e-09 Score=112.34 Aligned_cols=165 Identities=9% Similarity=0.008 Sum_probs=140.9
Q ss_pred cHHHHHHHHHHHH-hCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHhC
Q 005381 41 SKEAVELSTKLLE-TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG-AWHHRKWILSKG 118 (699)
Q Consensus 41 ~~eaL~~~~~~L~-~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~-aW~hR~w~L~~~ 118 (699)
.++|+..+++++. ++|++..+|...+.++...+. ++++...++++++.+|+++. +|...+.++.+.
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 147 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMK------------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 147 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHhccccCccHHHHHHHHHHHHh
Confidence 3899999999999 799999999999999888765 89999999999999999997 999999888776
Q ss_pred CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHH-hcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCcc
Q 005381 119 HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAA-SMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFV 197 (699)
Q Consensus 119 ~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~-~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~ 197 (699)
+.++++.+.++++++.+|.++++|...+.+-. ..|.+ ++.++.++++++.+|.+..+|...+.++...+.
T Consensus 148 -~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~------- 218 (308)
T 2ond_A 148 -EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK-SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE------- 218 (308)
T ss_dssp -HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-------
T ss_pred -cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-------
Confidence 58999999999999999999999886655533 25666 789999999999999999999998888776643
Q ss_pred chhchHHHHHHHHHHHHHh---CCC-CchhHHHHHHHH
Q 005381 198 SKEKVLPDEYEFVHQAIFT---DPD-DQSGWFYHLWLL 231 (699)
Q Consensus 198 ~~~~~~~eeL~~~~~ai~~---dP~-d~SaW~Y~~~Ll 231 (699)
++++...+.+|+.. +|+ ....|.-...+.
T Consensus 219 -----~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 219 -----DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp -----HHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 78999999999995 564 777887544443
No 167
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.08 E-value=2e-10 Score=131.16 Aligned_cols=121 Identities=19% Similarity=0.132 Sum_probs=79.5
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAH 617 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~l 617 (699)
|+|++|.|+.++.+.. +|+.|+|++|.|+.+|. .+++|+.|+|++|.|++++ . .+++|+.|+|++|+|+.+
T Consensus 105 L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp--~---~l~~L~~L~Ls~N~L~~l 175 (571)
T 3cvr_A 105 LDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLP--E---LPTSLEVLSVRNNQLTFL 175 (571)
T ss_dssp EECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCC--C---CCTTCCEEECCSSCCSCC
T ss_pred EEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCC--C---cCCCcCEEECCCCCCCCc
Confidence 8888888887776433 78888888888877877 6778888888888888762 2 467888888888888887
Q ss_pred CcccccccCCCCCcccccCCCCcccee---------------ecC-CcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 618 SIDTTKYLCSSPLSHSVGSEWNHGQTV---------------IDD-DIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 618 p~~~~~~l~~l~ll~ll~l~~N~l~~~---------------~~~-~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
|. +. +.+..+++++|.++.+ .++ .++.+..+|..+..+ +|+.|+|++|+|
T Consensus 176 p~-----l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 176 PE-----LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CC-----CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred ch-----hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 63 22 2333346667766432 112 223333445545555 666666666666
No 168
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.08 E-value=2e-11 Score=143.91 Aligned_cols=116 Identities=22% Similarity=0.235 Sum_probs=91.9
Q ss_pred CcHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCccc-CCCCCc
Q 005381 477 HSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLG-SFDKLL 555 (699)
Q Consensus 477 ~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~-~l~~L~ 555 (699)
..++.+..+..|+.||+++|.+ ..++..++.+..|+. |+|++|.|+.++ .+..|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l-----------------~~l~~~~~~l~~L~~-------L~Ls~N~l~~lp~~~~~l~ 270 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQI-----------------FNISANIFKYDFLTR-------LYLNGNSLTELPAEIKNLS 270 (727)
T ss_dssp -------CCCCCCEEECTTSCC-----------------SCCCGGGGGCCSCSC-------CBCTTSCCSCCCGGGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCC-----------------CCCChhhcCCCCCCE-------EEeeCCcCcccChhhhCCC
Confidence 4466788889999999999982 223333444555555 899999999887 789999
Q ss_pred ccCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCC
Q 005381 556 WVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHS 618 (699)
Q Consensus 556 ~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp 618 (699)
+|+.|+|++|.|+.+|. |..|++|+.|+|++|.|+.+ |..|+.|++|+.|+|++|+|+..+
T Consensus 271 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~l--p~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 271 NLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL--PWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp TCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCC--CSSTTSCTTCCCEECTTSCCCSHH
T ss_pred CCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCcc--ChhhhcCCCccEEeCCCCccCCCC
Confidence 99999999999999988 99999999999999999877 566999999999999999998754
No 169
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.08 E-value=7.8e-11 Score=124.01 Aligned_cols=151 Identities=17% Similarity=0.097 Sum_probs=100.9
Q ss_pred HhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCc---cc---CCCCCcc
Q 005381 483 ELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSR---LG---SFDKLLW 556 (699)
Q Consensus 483 ~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~---l~---~l~~L~~ 556 (699)
..+++|++|++++|.+... ....+..+.+++. |+|++|.+.. ++ .+..+++
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~----------------~~~~~~~l~~L~~-------L~Ls~N~l~~~~~~~~~~~~~~l~~ 198 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAF----------------SCEQVRAFPALTS-------LDLSDNPGLGERGLMAALCPHKFPA 198 (310)
T ss_dssp TBCSCCCEEEEECCSSCCC----------------CTTSCCCCTTCCE-------EECCSCTTCHHHHHHTTSCTTSSCC
T ss_pred hhccCCCEEEeeCCCcchh----------------hHHHhccCCCCCE-------EECCCCCCccchhhhHHHhhhcCCC
Confidence 4577888888888872110 0111222333333 8888888753 22 3467888
Q ss_pred cCEEEccCCCCCCCcC-----CccccccceeecccCCCCCCCCCcccccc---ccccccccccccCCCCCcccccccCCC
Q 005381 557 VQMLDLSHNELRSIEG-----LEALQLLSCLNLSNNILGSFTALEPIRQL---KSLRALNISYNEIGAHSIDTTKYLCSS 628 (699)
Q Consensus 557 L~~LdLS~N~L~~l~~-----l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l---~~L~~L~Ls~N~I~~lp~~~~~~l~~l 628 (699)
|++|+|++|.++.++. +..+++|+.|+|++|+|++. .|..+..+ ++|+.|+|++|+|+.+|...+
T Consensus 199 L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~------ 271 (310)
T 4glp_A 199 IQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT-VNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP------ 271 (310)
T ss_dssp CCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC-CCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC------
T ss_pred CCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc-chhhHHhccCcCcCCEEECCCCCCCchhhhhc------
Confidence 8888888888877665 35678888888888888875 23445554 688888888888888763221
Q ss_pred CCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCC
Q 005381 629 PLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIV 675 (699)
Q Consensus 629 ~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~ 675 (699)
+-+..+++++|.++.+ | .+..+ +|+.|+|++|+|.
T Consensus 272 ~~L~~L~Ls~N~l~~~-----------~-~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 272 AKLRVLDLSSNRLNRA-----------P-QPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCCSCEECCSCCCCSC-----------C-CTTSCCCCSCEECSSTTTS
T ss_pred CCCCEEECCCCcCCCC-----------c-hhhhCCCccEEECcCCCCC
Confidence 2333347777777432 1 25677 8999999999994
No 170
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.07 E-value=9.5e-09 Score=107.17 Aligned_cols=164 Identities=12% Similarity=-0.005 Sum_probs=129.6
Q ss_pred cHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 005381 41 SKEAVELSTKLLET--NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG 118 (699)
Q Consensus 41 ~~eaL~~~~~~L~~--nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~ 118 (699)
.++|++.+++++.. +|++.++|...+.++...++ +++++..+++ |.+..+|..++.++.+.
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~------------~~~Al~~l~~-----~~~~~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN------------PDAALRTLHQ-----GDSLECMAMTVQILLKL 143 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC------------HHHHHHHHTT-----CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC------------HHHHHHHHhC-----CCCHHHHHHHHHHHHHC
Confidence 37999999999986 69999999999999988865 7888888777 88888888888888877
Q ss_pred CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHH--hcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCc
Q 005381 119 HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAA--SMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF 196 (699)
Q Consensus 119 ~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~--~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~ 196 (699)
++++++++.++++++.+|.+.......+|+-- ..+++ ++.++.++++++.+|.+..+|+.++.++..+++
T Consensus 144 -g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~-~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~------ 215 (291)
T 3mkr_A 144 -DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKL-QDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR------ 215 (291)
T ss_dssp -TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHH-HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC------
T ss_pred -CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC------
Confidence 58888888888888888887644433444322 22445 678888888888888888888888888877755
Q ss_pred cchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcC
Q 005381 197 VSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTV 235 (699)
Q Consensus 197 ~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~ 235 (699)
++++++.+.+|+..+|+|..+|+.+..++....
T Consensus 216 ------~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 216 ------WEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp ------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 788888888888888888888888776665543
No 171
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.07 E-value=7.8e-10 Score=129.31 Aligned_cols=140 Identities=9% Similarity=-0.091 Sum_probs=129.4
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHH
Q 005381 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHR 111 (699)
Q Consensus 32 ~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR 111 (699)
......|.+ ++|++.+++++..+|++..+|+.++.++...++ +++++..++++++.+|+++.+|..+
T Consensus 441 ~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~------------~~~A~~~~~~al~l~P~~~~~~~~l 507 (681)
T 2pzi_A 441 RALLDLGDV-AKATRKLDDLAERVGWRWRLVWYRAVAELLTGD------------YDSATKHFTEVLDTFPGELAPKLAL 507 (681)
T ss_dssp HHHHHHTCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred HHHHhcCCH-HHHHHHHHHHhccCcchHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCChHHHHHH
Confidence 344566777 899999999999999999999999999998865 9999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 005381 112 KWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSN 187 (699)
Q Consensus 112 ~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~ 187 (699)
+.++.+. +.+++ ++.|+++++++|.+..+|.+++.++..+|.+ ++++++++++++.+|.+..||.+++.++..
T Consensus 508 g~~~~~~-g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 508 AATAELA-GNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDR-VGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHH-TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHHHc-CChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCH-HHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 9999987 58899 9999999999999999999999999999998 789999999999999999999999988643
No 172
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.07 E-value=2.7e-09 Score=117.30 Aligned_cols=188 Identities=9% Similarity=-0.093 Sum_probs=153.1
Q ss_pred CCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 005381 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK 117 (699)
Q Consensus 38 ~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~ 117 (699)
+.| ++|++++.++|.++|++..+|...+.+...++.. ..++++++.+++++..+|++..+|...+..+..
T Consensus 152 ~~y-~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~---------~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 152 NQN-ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW---------PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHK 221 (472)
T ss_dssp THH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS---------CCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred ccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc---------hHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence 344 8999999999999999999999998887666431 124578899999999999999999999988876
Q ss_pred CC---CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhcc
Q 005381 118 GH---SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVE 194 (699)
Q Consensus 118 ~~---~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~ 194 (699)
.. +.++++++++++++..+|.+..+|.+.+.+....+.+ ++.++++.++++.+|.+..+|+..+.+..........
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~ 300 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEP-DKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN 300 (472)
T ss_dssp CC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCch-HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhh
Confidence 43 4678999999999999999999999999999999998 6899999999999999999999998876544322110
Q ss_pred -------CccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCC
Q 005381 195 -------GFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (699)
Q Consensus 195 -------~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~ 236 (699)
........++++++.+.+++..+|.+..+|+.+..+.....+
T Consensus 301 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 301 LRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 011223457889999999999999999999998888766443
No 173
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.07 E-value=2.3e-09 Score=119.42 Aligned_cols=146 Identities=10% Similarity=0.029 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 005381 59 YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (699)
Q Consensus 59 ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dpr 138 (699)
..+|..++.+....+. +++++..+++++..+|+ ..+|...+.++... +.+++++++++++++.+|.
T Consensus 243 ~~~~~~~g~~~~~~~~------------~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~ 308 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNN------------LLDAQVLLQESINLHPT-PNSYIFLALTLADK-ENSQEFFKFFQKAVDLNPE 308 (537)
T ss_dssp HHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCS-SCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhccc------------HHHHHHHHHHHHhcCCC-chHHHHHHHHHHHh-cCHHHHHHHHHHHhccCCC
Confidence 3467778887777654 89999999999999999 99999999988766 6899999999999999999
Q ss_pred ChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCC
Q 005381 139 NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (699)
Q Consensus 139 N~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP 218 (699)
+..+|..++.+....+.+ ++.++++.++++.+|.+..+|..++.++...+. ++++++.+.+++..+|
T Consensus 309 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDY-KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK------------FTESEAFFNETKLKFP 375 (537)
T ss_dssp CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCC
Confidence 999999999999999998 789999999999999999999999999887755 7999999999999999
Q ss_pred CCchhHHHHHHHH
Q 005381 219 DDQSGWFYHLWLL 231 (699)
Q Consensus 219 ~d~SaW~Y~~~Ll 231 (699)
++..+|+++..++
T Consensus 376 ~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 376 TLPEVPTFFAEIL 388 (537)
T ss_dssp TCTHHHHHHHHHH
T ss_pred CChHHHHHHHHHH
Confidence 9999998776643
No 174
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.06 E-value=1.6e-09 Score=101.15 Aligned_cols=124 Identities=4% Similarity=-0.245 Sum_probs=112.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHH
Q 005381 47 LSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNEL 126 (699)
Q Consensus 47 ~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL 126 (699)
.+.+++.++|++..+|+.++.++...++ +++++..+++++..+|++..+|..++.++... +.+++++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~ 75 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGX------------YEDAHXVFQALCVLDHYDSRFFLGLGACRQAM-GQYDLAI 75 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH-hhHHHHH
Confidence 3778899999999999999999988865 99999999999999999999999999999987 6999999
Q ss_pred HHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHH
Q 005381 127 RLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (699)
Q Consensus 127 ~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~l 184 (699)
+.++++++++|.+..+|.+++.++..+|.+ +++++++.++++.+|.+...+..+..+
T Consensus 76 ~~~~~al~l~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~ 132 (148)
T 2vgx_A 76 HSYSYGAVMDIXEPRFPFHAAECLLQXGEL-AEAESGLFLAQELIANXPEFXELSTRV 132 (148)
T ss_dssp HHHHHHHHHSTTCTHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence 999999999999999999999999999998 689999999999999877654444433
No 175
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.05 E-value=2.8e-10 Score=129.98 Aligned_cols=135 Identities=18% Similarity=0.067 Sum_probs=88.7
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAH 617 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~l 617 (699)
|+|++|.|+.++ ..+++|+.|+|++|.|+.+|.+.. +|+.|+|++|.|++++ . .+++|+.|+|++|.|+.+
T Consensus 85 L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp--~---~l~~L~~L~Ls~N~l~~l 155 (571)
T 3cvr_A 85 LEITQNALISLP--ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLP--E---LPALLEYINADNNQLTML 155 (571)
T ss_dssp EECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCC--C---CCTTCCEEECCSSCCSCC
T ss_pred EECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCC--C---cCccccEEeCCCCccCcC
Confidence 888888888887 667888888888888888877443 8888888888888862 3 577888888888888887
Q ss_pred CcccccccCCCCCcccccCCCCcccee--------ecC-CcchhhhhhccCCCCCc-------cEEEecCCCC-CCccch
Q 005381 618 SIDTTKYLCSSPLSHSVGSEWNHGQTV--------IDD-DIKSYWEAYFILKGLNL-------TQFDIVGNAI-VNEKFK 680 (699)
Q Consensus 618 p~~~~~~l~~l~ll~ll~l~~N~l~~~--------~~~-~~~~~~~~p~~l~~L~L-------~~LdLs~N~l-~~~~~~ 680 (699)
|. .++.+..+++++|.+..+ .++ .++.+..+|. |.. +| +.|+|++|.| .++.
T Consensus 156 p~-------~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~~lp~-- 224 (571)
T 3cvr_A 156 PE-------LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPA-VPV-RNHHSEETEIFFRCRENRITHIPE-- 224 (571)
T ss_dssp CC-------CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-CC---------CCEEEECCSSCCCCCCG--
T ss_pred CC-------cCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCCchhh-HHH-hhhcccccceEEecCCCcceecCH--
Confidence 63 122333346666664432 222 3334445555 433 56 8888888888 3222
Q ss_pred HHHhhcCCcccccc
Q 005381 681 SFLIKVLPGLKWLD 694 (699)
Q Consensus 681 ~~~~~~l~~L~~LD 694 (699)
.+ ..+++|+.||
T Consensus 225 -~l-~~l~~L~~L~ 236 (571)
T 3cvr_A 225 -NI-LSLDPTCTII 236 (571)
T ss_dssp -GG-GGSCTTEEEE
T ss_pred -HH-hcCCCCCEEE
Confidence 12 2367777655
No 176
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.05 E-value=1.5e-10 Score=136.46 Aligned_cols=98 Identities=22% Similarity=0.189 Sum_probs=63.8
Q ss_pred EEccCCCCCccc-CCCCCcccCEEEccCCCCCCCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCC
Q 005381 538 LQLKNLSLSRLG-SFDKLLWVQMLDLSHNELRSIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIG 615 (699)
Q Consensus 538 L~Ls~n~l~~l~-~l~~L~~L~~LdLS~N~L~~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~ 615 (699)
|+|++|.+..++ .+..+++|+.|+|++|.|+.+|. |..|++|+.|+|++|.|+.+ |..++.|++|+.|+|++|.|+
T Consensus 229 L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL--PAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp EECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC--CSSGGGGTTCSEEECCSSCCC
T ss_pred EECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc--ChhhcCCCCCCEEECCCCCCC
Confidence 777777777665 55567777777777777777766 77777777777777777755 556677777777777777777
Q ss_pred CCCcccccccCCCCCcccccCCCCcc
Q 005381 616 AHSIDTTKYLCSSPLSHSVGSEWNHG 641 (699)
Q Consensus 616 ~lp~~~~~~l~~l~ll~ll~l~~N~l 641 (699)
.+|. .+..+..+..+++++|.+
T Consensus 307 ~lp~----~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 307 TLPW----EFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCCS----STTSCTTCCCEECTTSCC
T ss_pred ccCh----hhhcCCCccEEeCCCCcc
Confidence 6652 133333333445555555
No 177
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.05 E-value=3.1e-09 Score=117.30 Aligned_cols=192 Identities=12% Similarity=0.055 Sum_probs=133.6
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCC----------CCchh------------hhhh
Q 005381 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND----------SDPDS------------LKSI 86 (699)
Q Consensus 29 ~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~----------~~~~~------------~~~~ 86 (699)
.........|.+ ++|+..+.+++..+|+ ..+|...+.++...+...+ .+|+. ....
T Consensus 242 ~~~~~~~~~~~~-~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDP-LGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCH-HHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 333444556666 6888888888888888 8888888887776654111 01100 0123
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHH
Q 005381 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~ 166 (699)
+++++..+++++..+|++..+|...+.++... +.+++++..++++++.+|.+..+|...+.+....|.+ ++.++++.+
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRE-NKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF-DKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT-TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCH-HHHHHHHHH
Confidence 56667777777777777777777766666655 4677777777777777777777777777777777766 566777777
Q ss_pred HHHhccCchH------HHHHHHHHHHH---hhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCcCC
Q 005381 167 MICNNFSNYS------AWHNRSLLLSN---LLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (699)
Q Consensus 167 ~I~~n~sN~S------AW~~R~~ll~~---l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~~~ 236 (699)
+++.+|.+.. +|..++.++.. . +.++++++.+.+++..+|++..+|+.+..++....+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTV------------ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT------------THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhc------------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence 7777776654 77777766655 4 348999999999999999999999988888866443
No 178
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.05 E-value=1e-08 Score=112.63 Aligned_cols=175 Identities=9% Similarity=-0.100 Sum_probs=147.4
Q ss_pred HhcCCCCcHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCCh
Q 005381 34 NHHNHIYSKEAVELSTKLLETN--------PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY 105 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~n--------P~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy 105 (699)
....|.+ ++|+..+++++.++ ++...++..+++++..++. +.|++++.++++++..+|++.
T Consensus 104 y~~~g~~-~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~y~~A~~~~~kal~~~p~~~ 172 (472)
T 4g1t_A 104 YYHMGRL-SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGG----------NQNERAKVCFEKALEKKPKNP 172 (472)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCT----------THHHHHHHHHHHHHHHSTTCH
T ss_pred HHHcCCh-HHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHcc----------ccHHHHHHHHHHHHHhCCCCH
Confidence 3456777 79999999999984 4567888899998887754 459999999999999999999
Q ss_pred HHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCCh---HHHHHHHHHHHHhccCchHHHHH
Q 005381 106 GAWHHRKWILSKG--HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSE---EDELKYTEDMICNNFSNYSAWHN 180 (699)
Q Consensus 106 ~aW~hR~w~L~~~--~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~---e~EL~~~~~~I~~n~sN~SAW~~ 180 (699)
.+|...+.+...+ .+..+++++.+.++++++|.+..+|...+..+..++... ++.+++++++++.+|.+..+|.+
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~ 252 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRS 252 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 9999888775432 146788999999999999999999999998887765431 56888999999999999999999
Q ss_pred HHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005381 181 RSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 181 R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll 231 (699)
++.++...+. ++++++.+.+|+..+|++..+|+.+..+.
T Consensus 253 lg~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 253 AAKFYRRKDE------------PDKAIELLKKALEYIPNNAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHHTTC------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCc------------hHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 9999887754 79999999999999999999998766554
No 179
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.05 E-value=1.1e-10 Score=129.91 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=59.3
Q ss_pred eEEccCCCCCcccCCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCC
Q 005381 537 CLQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGA 616 (699)
Q Consensus 537 ~L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~ 616 (699)
.|++++|.++.++.+..+++|++|++++|.++.+|.. ..+|+.|++++|.++++ +.++.+++|+.|++++|.++.
T Consensus 135 ~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l---~~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 135 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEEL---PELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSC---CCCTTCTTCCEEECCSSCCSS
T ss_pred EEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcC---ccccCCCCCCEEECCCCcCCc
Confidence 3888888888877788888888888888888777762 24788888888888776 247778888888888888877
Q ss_pred CC
Q 005381 617 HS 618 (699)
Q Consensus 617 lp 618 (699)
+|
T Consensus 210 l~ 211 (454)
T 1jl5_A 210 LP 211 (454)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 180
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.05 E-value=3.8e-10 Score=127.13 Aligned_cols=112 Identities=18% Similarity=0.123 Sum_probs=81.9
Q ss_pred CCCcHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCC
Q 005381 475 ISHSEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKL 554 (699)
Q Consensus 475 ~~~~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L 554 (699)
.+..+..+..+++|++||+++|.+..- .+..+..+.+++. |+|++|.++.++.. .+
T Consensus 34 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------~~~~~~~l~~L~~-------L~Ls~N~l~~lp~~-~l 89 (520)
T 2z7x_B 34 SELWTSDILSLSKLRILIISHNRIQYL----------------DISVFKFNQELEY-------LDLSHNKLVKISCH-PT 89 (520)
T ss_dssp CCCCHHHHTTCTTCCEEECCSSCCCEE----------------EGGGGTTCTTCCE-------EECCSSCCCEEECC-CC
T ss_pred cccChhhccccccccEEecCCCccCCc----------------ChHHhhcccCCCE-------EecCCCceeecCcc-cc
Confidence 455567788888999999998872110 1222333344443 89999999888755 88
Q ss_pred cccCEEEccCCCCCC--CcC-CccccccceeecccCCCCCCCCCccccccccc--cccccccccC
Q 005381 555 LWVQMLDLSHNELRS--IEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSL--RALNISYNEI 614 (699)
Q Consensus 555 ~~L~~LdLS~N~L~~--l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L--~~L~Ls~N~I 614 (699)
++|++|+|++|.++. +|. |..+++|+.|++++|.|++ ..+..+++| +.|++++|.+
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTT
T ss_pred CCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccc
Confidence 899999999999865 445 8889999999999998875 235566666 8888888888
No 181
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.05 E-value=1.5e-09 Score=101.44 Aligned_cols=124 Identities=4% Similarity=-0.140 Sum_probs=113.6
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 005381 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (699)
Q Consensus 92 ~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n 171 (699)
..+++++..+|++..+|+.++.++.+. +.+++++..++++++.+|.|..+|..++.+....+.+ ++++++++++++.+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQS-GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQY-DLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHS
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcC
Confidence 457888999999999999999999887 6999999999999999999999999999999999998 78999999999999
Q ss_pred cCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005381 172 FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (699)
Q Consensus 172 ~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~ 229 (699)
|.+..+|++++.++..+++ ++++++++.+++..+|++...+..+..
T Consensus 86 p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~~~ 131 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGE------------LAEAESGLFLAQELIANXPEFXELSTR 131 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence 9999999999999988865 799999999999999998877655444
No 182
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.04 E-value=3e-10 Score=136.11 Aligned_cols=54 Identities=31% Similarity=0.389 Sum_probs=32.0
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCC
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGS 591 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~ 591 (699)
|+|++|.++.+. .+..+++|+.|+|++|.++.+++ |..+++|+.|+|++|.++.
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 666666665442 55566666666666666655554 5556666666666665554
No 183
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.03 E-value=2.7e-10 Score=129.39 Aligned_cols=124 Identities=28% Similarity=0.292 Sum_probs=82.6
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
|+|++|.++.++ .|..+++|++|+|++|.++.+++ |..+++|+.|+|++|.++.++ +..|..+++|+.|++++|.
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~ 111 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETN 111 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTSC
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccC-HhhhcCccccccccccccc
Confidence 777777777665 67777777777777777776654 777777777777777777652 3567777777777777777
Q ss_pred CCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 614 IGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 614 I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
++.++.. .+..+..+..+++++|.+..+ .+|..|.++ +|+.|++++|.+
T Consensus 112 l~~l~~~---~~~~l~~L~~L~L~~n~l~~~---------~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 112 LASLENF---PIGHLKTLKELNVAHNLIQSF---------KLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp CCCSTTC---SCTTCTTCCEEECCSSCCCCC---------CCCGGGGGCTTCCEEECTTSCC
T ss_pred cccCCCc---cccccccccEEecCCCcccee---------cChhhhcccCCCCEEeCcCCcc
Confidence 7776521 133344444445666655322 124566667 777777777777
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.02 E-value=8e-10 Score=104.66 Aligned_cols=106 Identities=8% Similarity=-0.018 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC-------Chh-----hhhHHHHHHHhcCCChHHHHHHHHHHHHh---
Q 005381 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSR-------NFH-----AWNYRRFVAASMNRSEEDELKYTEDMICN--- 170 (699)
Q Consensus 106 ~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dpr-------N~h-----aW~yR~~vl~~l~~~~e~EL~~~~~~I~~--- 170 (699)
..|..++-.+.+. +++++++++|+++|+++|. +.. +|.+|+.++..+|++ ++.+++++++|++
T Consensus 12 ~~~~~~G~~l~~~-g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~-~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVA-GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF-DEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhhhc
Confidence 4677888888877 6999999999999999999 444 999999999999999 7899999999999
Q ss_pred ----ccCchHHH----HHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHH
Q 005381 171 ----NFSNYSAW----HNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (699)
Q Consensus 171 ----n~sN~SAW----~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~ 225 (699)
+|.+..|| +.|+.++..+++ ++++++++++|+.++|+|.....
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr------------~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGR------------GAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHCCSCCT
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCC------------HHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999 999999999966 89999999999999999987654
No 185
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.02 E-value=2.6e-10 Score=111.60 Aligned_cols=102 Identities=24% Similarity=0.243 Sum_probs=80.9
Q ss_pred EEccCCCCCccc---CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG---SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYN 612 (699)
Q Consensus 538 L~Ls~n~l~~l~---~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N 612 (699)
|++++|.++.++ .+..+++|+.|+|++|.|+.+++ |..+++|+.|+|++|+|+++. +..|..+++|+.|+|++|
T Consensus 34 L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp EECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCCEEECCSS
T ss_pred EECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCCCCCEEECCCC
Confidence 999999998776 27889999999999999987744 889999999999999998873 456888999999999999
Q ss_pred cCCCCCcccccccCCCCCcccccCCCCccce
Q 005381 613 EIGAHSIDTTKYLCSSPLSHSVGSEWNHGQT 643 (699)
Q Consensus 613 ~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~ 643 (699)
+|+.++. ..+..++-+..+++.+|.+.+
T Consensus 113 ~l~~~~~---~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 113 QISCVMP---GSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCEECT---TSSTTCTTCCEEECTTCCBCC
T ss_pred cCCeeCH---HHhhcCCCCCEEEeCCCCccC
Confidence 9988743 234444445556778887754
No 186
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.02 E-value=2.5e-10 Score=128.56 Aligned_cols=119 Identities=13% Similarity=0.147 Sum_probs=64.3
Q ss_pred EEccCCCCCccc-CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccC
Q 005381 538 LQLKNLSLSRLG-SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEI 614 (699)
Q Consensus 538 L~Ls~n~l~~l~-~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I 614 (699)
+++++|.++.+| .+. ++|++|+|++|.++.+++ |..+++|+.|+|++|+|+++ .|..|..+++|++|+|++|+|
T Consensus 5 l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 5 VDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp EECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCC
T ss_pred EecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCce
Confidence 666666666555 222 566666666666655543 66666666666666666554 234556666666666666666
Q ss_pred CCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 615 GAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 615 ~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
+.+|.. .++-+..+++++|.+..+ ..|..|+++ +|+.|+|++|.|
T Consensus 82 ~~lp~~------~l~~L~~L~L~~N~l~~~---------~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 82 VKISCH------PTVNLKHLDLSFNAFDAL---------PICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp CEEECC------CCCCCSEEECCSSCCSSC---------CCCGGGGGCTTCCEEEEEESSC
T ss_pred eecCcc------ccCCccEEeccCCccccc---------cchhhhccCCcceEEEecCccc
Confidence 655421 222233334555544321 123455555 666666666666
No 187
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.01 E-value=1.8e-09 Score=99.46 Aligned_cols=127 Identities=3% Similarity=-0.213 Sum_probs=111.9
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHH
Q 005381 46 ELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNE 125 (699)
Q Consensus 46 ~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~E 125 (699)
..+.+++.++|++..+|..++.++...++ +++++..+++++..+|++..+|...+.++... +.++++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A 71 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGK------------WDDAQKIFQALCMLDHYDARYFLGLGACRQSL-GLYEQA 71 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHcc------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH-hhHHHH
Confidence 45678889999999999999999888765 99999999999999999999999999999987 699999
Q ss_pred HHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 005381 126 LRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (699)
Q Consensus 126 L~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~ 186 (699)
+.+++++++++|.+..+|.+.+.++..+|.+ ++.+++++++++.+|.+...+..+..+..
T Consensus 72 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 72 LQSYSYGALMDINEPRFPFHAAECHLQLGDL-DGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 9999999999999999999999999999998 78999999999999988776655554433
No 188
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.00 E-value=1.5e-08 Score=105.67 Aligned_cols=162 Identities=10% Similarity=0.033 Sum_probs=139.2
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w 113 (699)
....|.+ ++|++.+.+ |++..+|..++.++..+++ +++++..+++++..+|++..+....+|
T Consensus 111 ~~~~g~~-~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~------------~~~A~~~l~~~~~~~p~~~~~~l~~a~ 172 (291)
T 3mkr_A 111 YFYDQNP-DAALRTLHQ-----GDSLECMAMTVQILLKLDR------------LDLARKELKKMQDQDEDATLTQLATAW 172 (291)
T ss_dssp HHHTTCH-HHHHHHHTT-----CCSHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCH-HHHHHHHhC-----CCCHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhhCcCcHHHHHHHHH
Confidence 3456666 799999888 9999999999999998876 899999999999999998765555555
Q ss_pred HHH-hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhh
Q 005381 114 ILS-KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (699)
Q Consensus 114 ~L~-~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~ 192 (699)
+-. ...+.+++++.+++++++.+|.+..+|..++.+...+|.+ ++..+++.++++.+|.|..+|.+++.++..+++
T Consensus 173 ~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~-- 249 (291)
T 3mkr_A 173 VSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW-EAAEGVLQEALDKDSGHPETLINLVVLSQHLGK-- 249 (291)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--
T ss_pred HHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Confidence 433 2236899999999999999999999999999999999998 678899999999999999999999999888755
Q ss_pred ccCccchhchHHH-HHHHHHHHHHhCCCCchhHHH
Q 005381 193 VEGFVSKEKVLPD-EYEFVHQAIFTDPDDQSGWFY 226 (699)
Q Consensus 193 ~~~~~~~~~~~~e-eL~~~~~ai~~dP~d~SaW~Y 226 (699)
..+ ..+++.+++.++|+|..+-.|
T Consensus 250 ----------~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 250 ----------PPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp ----------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHhCCCChHHHHH
Confidence 344 468889999999999987665
No 189
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.00 E-value=6e-10 Score=127.03 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=76.2
Q ss_pred EEccCCCCCcccC-CCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccC
Q 005381 538 LQLKNLSLSRLGS-FDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEI 614 (699)
Q Consensus 538 L~Ls~n~l~~l~~-l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I 614 (699)
+++++|.++.+|. +. ++|+.|+|++|.|+.+++ |..+++|+.|+|++|.|+++ .+..|..+++|++|+|++|+|
T Consensus 36 l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 36 VDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp EECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCC
T ss_pred EEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcC
Confidence 7777777776662 32 677777777777766654 77777777777777777665 345567777777777777777
Q ss_pred CCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCC
Q 005381 615 GAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIV 675 (699)
Q Consensus 615 ~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~ 675 (699)
+.+|.. .++-+..+++++|.+..+. .|..|+++ +|+.|+|++|.|.
T Consensus 113 ~~lp~~------~l~~L~~L~Ls~N~l~~l~---------~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 113 QNISCC------PMASLRHLDLSFNDFDVLP---------VCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CEECSC------CCTTCSEEECCSSCCSBCC---------CCGGGGGCTTCCEEEEECSBCC
T ss_pred CccCcc------ccccCCEEECCCCCccccC---------chHhhcccCcccEEecCCCccc
Confidence 766532 2233333456666554322 13466667 7777777777773
No 190
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.00 E-value=1.1e-10 Score=125.27 Aligned_cols=161 Identities=13% Similarity=0.072 Sum_probs=104.2
Q ss_pred cHHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhh-hccCCCCCCCCCCCCeEEccCCCCCccc--CCCCC
Q 005381 478 SEEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSR-CFHYSNSPSNRGSPMCLQLKNLSLSRLG--SFDKL 554 (699)
Q Consensus 478 ~~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~-~~~l~~l~~l~L~~~~L~Ls~n~l~~l~--~l~~L 554 (699)
.+++|..+++|++||+++|...+.+ +.. +..+.++..+ +.+++|.++.++ .|..+
T Consensus 46 ~~~~f~~l~~L~~L~Ls~N~i~~~i----------------~~~~f~~L~~l~~~------l~~~~N~l~~l~~~~f~~l 103 (350)
T 4ay9_X 46 QKGAFSGFGDLEKIEISQNDVLEVI----------------EADVFSNLPKLHEI------RIEKANNLLYINPEAFQNL 103 (350)
T ss_dssp CTTSSTTCTTCCEEEEECCTTCCEE----------------CTTSBCSCTTCCEE------EEEEETTCCEECTTSBCCC
T ss_pred CHHHHcCCCCCCEEECcCCCCCCcc----------------ChhHhhcchhhhhh------hcccCCcccccCchhhhhc
Confidence 3446778899999999998732211 111 1223333332 667788888775 68888
Q ss_pred cccCEEEccCCCCCCCcC--Cccccccceeeccc-CCCCCCCCCccccccc-cccccccccccCCCCCcccccccCCCCC
Q 005381 555 LWVQMLDLSHNELRSIEG--LEALQLLSCLNLSN-NILGSFTALEPIRQLK-SLRALNISYNEIGAHSIDTTKYLCSSPL 630 (699)
Q Consensus 555 ~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~-N~l~~l~~~~~l~~l~-~L~~L~Ls~N~I~~lp~~~~~~l~~l~l 630 (699)
++|++|++++|.|+.++. +....++..|++++ |.+..++. ..|..+. .++.|+|++|+|+.+|...+ ....+
T Consensus 104 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~-~~f~~~~~~l~~L~L~~N~i~~i~~~~f---~~~~L 179 (350)
T 4ay9_X 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER-NSFVGLSFESVILWLNKNGIQEIHNSAF---NGTQL 179 (350)
T ss_dssp TTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT-TSSTTSBSSCEEEECCSSCCCEECTTSS---TTEEE
T ss_pred cccccccccccccccCCchhhcccchhhhhhhccccccccccc-cchhhcchhhhhhccccccccCCChhhc---cccch
Confidence 999999999999988877 55666677788755 56776632 3455554 68889999999988864322 12223
Q ss_pred cccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 631 SHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 631 l~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
..+.-..+|.++.+. +..|.++ +|+.|||++|.|
T Consensus 180 ~~l~l~~~n~l~~i~----------~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 180 DELNLSDNNNLEELP----------NDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp EEEECTTCTTCCCCC----------TTTTTTEECCSEEECTTSCC
T ss_pred hHHhhccCCcccCCC----------HHHhccCcccchhhcCCCCc
Confidence 333211234443322 2467888 999999999999
No 191
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.00 E-value=1.6e-08 Score=100.72 Aligned_cols=165 Identities=7% Similarity=-0.095 Sum_probs=139.2
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCch---HHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChH-
Q 005381 31 FLHNHHNHIYSKEAVELSTKLLETNPELY---TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG- 106 (699)
Q Consensus 31 ~~~~~~~~~~~~eaL~~~~~~L~~nP~~y---taWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~- 106 (699)
.......|.+ ++|+..+++++..+|+.. .+|..++.+....+. +++++..++++++.+|++..
T Consensus 11 a~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~------------~~~A~~~~~~~l~~~P~~~~~ 77 (225)
T 2yhc_A 11 AQQKLQDGNW-RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD------------LPLAQAAIDRFIRLNPTHPNI 77 (225)
T ss_dssp HHHHHHHTCH-HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCTTH
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHHCcCCCcH
Confidence 3445566888 899999999999999874 689999999988865 99999999999999999986
Q ss_pred --HHHHHHHHHHhC-----------------CCChHHHHHHHHHHHHhCCCChhhhh-----------------HHHHHH
Q 005381 107 --AWHHRKWILSKG-----------------HSSIDNELRLLDKFQKADSRNFHAWN-----------------YRRFVA 150 (699)
Q Consensus 107 --aW~hR~w~L~~~-----------------~~~~~~EL~~~~k~L~~dprN~haW~-----------------yR~~vl 150 (699)
+|+.++.++.+. .+.+++++..++++++.+|.+..+|. ..+.+.
T Consensus 78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~ 157 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYY 157 (225)
T ss_dssp HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999887641 14678999999999999999998884 445556
Q ss_pred HhcCCChHHHHHHHHHHHHhccCch---HHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCc
Q 005381 151 ASMNRSEEDELKYTEDMICNNFSNY---SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (699)
Q Consensus 151 ~~l~~~~e~EL~~~~~~I~~n~sN~---SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~ 221 (699)
...+.+ ++.+..++++++.+|.+. .+|..++.+...++. ++++++.++.+....|++.
T Consensus 158 ~~~~~~-~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~------------~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 158 TERGAW-VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM------------NAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHTCH-HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHCCSCCC
T ss_pred HHcCcH-HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHhhCCCch
Confidence 666777 689999999999999876 679999999888865 7999999999999888765
No 192
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.99 E-value=1.3e-09 Score=104.06 Aligned_cols=158 Identities=9% Similarity=-0.033 Sum_probs=130.5
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 005381 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (699)
Q Consensus 31 ~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~h 110 (699)
.......|.+ ++|+..+.+++..+|++..+|...+.++...++ +++++..+++++..+| +...+..
T Consensus 13 a~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~------------~~~A~~~~~~a~~~~p-~~~~~~~ 78 (176)
T 2r5s_A 13 VSELLQQGEH-AQALNVIQTLSDELQSRGDVKLAKADCLLETKQ------------FELAQELLATIPLEYQ-DNSYKSL 78 (176)
T ss_dssp HHHHHHTTCH-HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC------------HHHHHHHHTTCCGGGC-CHHHHHH
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC------------HHHHHHHHHHhhhccC-ChHHHHH
Confidence 3344567777 899999999999999999999999999998865 8999999999999999 7776665
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCc--hHHHHHHHHHHHHh
Q 005381 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN--YSAWHNRSLLLSNL 188 (699)
Q Consensus 111 R~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN--~SAW~~R~~ll~~l 188 (699)
...+.........++++.++++++.+|.+..+|...+.++...|.+ ++.++++.++++.+|.. ..+|...+.++..+
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRD-EEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH-HHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 5544321101223579999999999999999999999999999998 78999999999999876 56999999988887
Q ss_pred hhhhccCccchhchHHHHHHHHHHHHH
Q 005381 189 LKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (699)
Q Consensus 189 ~~~~~~~~~~~~~~~~eeL~~~~~ai~ 215 (699)
++ .++++..+.+++.
T Consensus 158 g~------------~~~A~~~y~~al~ 172 (176)
T 2r5s_A 158 GQ------------GNAIASKYRRQLY 172 (176)
T ss_dssp CS------------SCHHHHHHHHHHH
T ss_pred CC------------CCcHHHHHHHHHH
Confidence 65 4667777777764
No 193
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.99 E-value=7.5e-09 Score=92.59 Aligned_cols=118 Identities=8% Similarity=-0.024 Sum_probs=106.6
Q ss_pred CCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005381 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA 135 (699)
Q Consensus 56 P~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~ 135 (699)
|....+|..++..+...+. +++++..+++++..+|++..+|..++.++.+. +.++++++.+++++++
T Consensus 1 p~~a~~~~~~g~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSD------------WPNAVKAYTEMIKRAPEDARGYSNRAAALAKL-MSFPEAIADCNKAIEK 67 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-cCHHHHHHHHHHHHHh
Confidence 4556789999988887755 99999999999999999999999999999988 6999999999999999
Q ss_pred CCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhc------cCchHHHHHHHHHHHH
Q 005381 136 DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN------FSNYSAWHNRSLLLSN 187 (699)
Q Consensus 136 dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n------~sN~SAW~~R~~ll~~ 187 (699)
+|.+..+|..++.+...+|.+ ++.++++.++++.+ |.|..++.....+...
T Consensus 68 ~p~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 DPNFVRAYIRKATAQIAVKEY-ASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 999999999999999999998 78999999999999 8888888777665543
No 194
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.98 E-value=2.3e-09 Score=114.28 Aligned_cols=135 Identities=13% Similarity=-0.056 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC---------------hH
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS---------------YG 106 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs---------------y~ 106 (699)
++|++.+.+++..+|+...+|+.++.++...++ +++++..+++++..+|.+ ..
T Consensus 130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK------------YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred ccccchhcCCHHHHHHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 357777888899999999999999999988865 999999999999999999 59
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 005381 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (699)
Q Consensus 107 aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~ 186 (699)
+|..++.++.+. +.+++++++|+++++++|.|..+|..++.++..++.+ +++++++.++++.+|.|..+|..++.+..
T Consensus 198 ~~~nla~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 198 SHLNLAMCHLKL-QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDF-ELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 999999999988 6999999999999999999999999999999999998 78999999999999999999999999988
Q ss_pred Hhhh
Q 005381 187 NLLK 190 (699)
Q Consensus 187 ~l~~ 190 (699)
.++.
T Consensus 276 ~~~~ 279 (336)
T 1p5q_A 276 RIRR 279 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 195
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.97 E-value=1e-09 Score=126.81 Aligned_cols=53 Identities=30% Similarity=0.232 Sum_probs=33.2
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcC-C---ccc--------------cccceeecccCCCCCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEG-L---EAL--------------QLLSCLNLSNNILGSF 592 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~-l---~~L--------------~~L~~L~Ls~N~l~~l 592 (699)
|++++|.++.++. .+++|++|+|++|.|+.+|. + ..| ++|+.|++++|.|+++
T Consensus 126 L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l 196 (622)
T 3g06_A 126 LWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASL 196 (622)
T ss_dssp EECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC
T ss_pred EECCCCCCCcCCC--CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCC
Confidence 7777777776653 24677777777777766554 2 222 5566666666666654
No 196
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.97 E-value=1.9e-09 Score=99.34 Aligned_cols=125 Identities=6% Similarity=-0.135 Sum_probs=111.7
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 005381 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (699)
Q Consensus 92 ~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n 171 (699)
..+++++..+|++..+|+.++.++.+. +.+++++..+++++..+|.|..+|...+.+....+.+ ++.+++++++++.+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQA-GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY-EQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcC
Confidence 456778889999999999999999877 6999999999999999999999999999999999998 78999999999999
Q ss_pred cCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005381 172 FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (699)
Q Consensus 172 ~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~L 230 (699)
|.+..+|.+++.++..+++ ++++++.+.+++..+|++...+..+.-+
T Consensus 83 p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGD------------LDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 9999999999999988865 7999999999999999998887655443
No 197
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.97 E-value=5.8e-09 Score=102.76 Aligned_cols=146 Identities=8% Similarity=-0.053 Sum_probs=117.7
Q ss_pred chHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHH----------------HHHHHHhCCCC
Q 005381 58 LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH----------------RKWILSKGHSS 121 (699)
Q Consensus 58 ~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~h----------------R~w~L~~~~~~ 121 (699)
....+..++..+...++ +++++..+++++..+|++..+|+. ++.++.+. +.
T Consensus 3 ~~~~~~~~g~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~ 69 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQ------------NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN-RN 69 (208)
T ss_dssp CHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT-TC
T ss_pred CHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC-CC
Confidence 34556677777776654 999999999999999999999999 99999887 69
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhc
Q 005381 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEK 201 (699)
Q Consensus 122 ~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~ 201 (699)
+++++..++++++++|.+..+|..++.+....|.+ ++++++++++++.+|.|..+|..++.++...+. .
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~----------~ 138 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE-KDALRMYEKILQLEADNLAANIFLGNYYYLTAE----------Q 138 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH----------H
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH----------H
Confidence 99999999999999999999999999999999998 789999999999999999999999998765543 1
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHHHH
Q 005381 202 VLPDEYEFVHQAIFTDPDDQSGWFYHL 228 (699)
Q Consensus 202 ~~~eeL~~~~~ai~~dP~d~SaW~Y~~ 228 (699)
...++.+.+.+++..+|. ..+|+++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~-~~a~~~~g 164 (208)
T 3urz_A 139 EKKKLETDYKKLSSPTKM-QYARYRDG 164 (208)
T ss_dssp HHHHHHHHHC---CCCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCch-hHHHHHHH
Confidence 134556666666543332 23455443
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.97 E-value=2.7e-09 Score=101.03 Aligned_cols=112 Identities=11% Similarity=-0.006 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCC-------ChH-----HHHHHHHHHHhCCCChHHHH
Q 005381 59 YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK-------SYG-----AWHHRKWILSKGHSSIDNEL 126 (699)
Q Consensus 59 ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPK-------sy~-----aW~hR~w~L~~~~~~~~~EL 126 (699)
...|..++..+...++ |++++..|+++|..+|. +.. +|++|+.++.++ +++++++
T Consensus 11 a~~~~~~G~~l~~~g~------------~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~L-gr~~eAl 77 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGE------------YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL-RSFDEAL 77 (159)
T ss_dssp HHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHC-CCHHHHH
Confidence 4567788888888865 99999999999999999 554 999999999998 6999999
Q ss_pred HHHHHHHHh-------CCCChhhh----hHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHH
Q 005381 127 RLLDKFQKA-------DSRNFHAW----NYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (699)
Q Consensus 127 ~~~~k~L~~-------dprN~haW----~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~l 184 (699)
.+|+++|++ +|.+..|| +.|+.++..++++ ++++++++++|+++|.+-....-+..+
T Consensus 78 ~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~-eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 78 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG-AEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp HHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred HHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999999999 99999999 9999999999999 789999999999999987765544433
No 199
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.95 E-value=1.4e-10 Score=124.88 Aligned_cols=131 Identities=22% Similarity=0.306 Sum_probs=75.9
Q ss_pred EEccCCCCCccc------CCCCC-cccCEEEccCCCCCCCcC------Cccc-cccceeecccCCCCCCCC---Cccccc
Q 005381 538 LQLKNLSLSRLG------SFDKL-LWVQMLDLSHNELRSIEG------LEAL-QLLSCLNLSNNILGSFTA---LEPIRQ 600 (699)
Q Consensus 538 L~Ls~n~l~~l~------~l~~L-~~L~~LdLS~N~L~~l~~------l~~L-~~L~~L~Ls~N~l~~l~~---~~~l~~ 600 (699)
|+|++|.++..+ .+..+ ++|+.|+|++|.|+..+. +..+ .+|+.|+|++|.|+.... +..+..
T Consensus 85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 164 (362)
T 3goz_A 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA 164 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHT
T ss_pred EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhc
Confidence 888888877544 24444 788888888888866554 2232 478888888888774310 112233
Q ss_pred cc-cccccccccccCCCCCcccc-cccCCC-CCcccccCCCCccceeecCCcchhhhhhccCCC-C-CccEEEecCCCC
Q 005381 601 LK-SLRALNISYNEIGAHSIDTT-KYLCSS-PLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKG-L-NLTQFDIVGNAI 674 (699)
Q Consensus 601 l~-~L~~L~Ls~N~I~~lp~~~~-~~l~~l-~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~-L-~L~~LdLs~N~l 674 (699)
++ +|+.|+|++|+|+..+.... ..+... .-+..+++++|.+... ....++..+.. . +|+.|+|++|.|
T Consensus 165 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~------~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK------SYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS------CHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh------HHHHHHHHHhcCCCCceEEECcCCCC
Confidence 44 78888888888876642111 122222 1333346666665321 11123344444 3 677888888877
No 200
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.94 E-value=9.6e-09 Score=96.65 Aligned_cols=116 Identities=12% Similarity=-0.017 Sum_probs=107.4
Q ss_pred CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005381 55 NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQK 134 (699)
Q Consensus 55 nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~ 134 (699)
+++...+|..++.++...++ +++++..+++++..+|++..+|..++.++.+. +.+++++..++++++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~ 73 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKE------------YSKAIDLYTQALSIAPANPIYLSNRAAAYSAS-GQHEKAAEDAELATV 73 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHH
Confidence 56677889999998888765 99999999999999999999999999999987 699999999999999
Q ss_pred hCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHH
Q 005381 135 ADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (699)
Q Consensus 135 ~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~l 184 (699)
++|.+..+|..++.++..++.+ ++.++++.++++.+|.|..+|..++..
T Consensus 74 ~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 74 VDPKYSKAWSRLGLARFDMADY-KGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999999999998 789999999999999999999888754
No 201
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.92 E-value=2.6e-09 Score=102.64 Aligned_cols=102 Identities=25% Similarity=0.278 Sum_probs=80.6
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
|++++|.++.++ .+..+++|++|+|++|.|+.+++ |..+++|+.|++++|.|++++ +..+..+++|+.|+|++|.
T Consensus 33 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~ 111 (177)
T 2o6r_A 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP-NGVFDKLTQLKELALDTNQ 111 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC-HHHhhCCcccCEEECcCCc
Confidence 999999998776 47888999999999999988877 788999999999999998873 3557888999999999999
Q ss_pred CCCCCcccccccCCCCCcccccCCCCccce
Q 005381 614 IGAHSIDTTKYLCSSPLSHSVGSEWNHGQT 643 (699)
Q Consensus 614 I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~ 643 (699)
|+.+|... +..++.+..+++.+|.+.+
T Consensus 112 l~~~~~~~---~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 112 LKSVPDGI---FDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSCCCTTT---TTTCTTCCEEECCSSCBCC
T ss_pred ceEeCHHH---hcCCcccCEEEecCCCeec
Confidence 99886432 2333444445777787654
No 202
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=1.4e-09 Score=104.36 Aligned_cols=81 Identities=28% Similarity=0.387 Sum_probs=73.0
Q ss_pred eEEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccc
Q 005381 537 CLQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYN 612 (699)
Q Consensus 537 ~L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N 612 (699)
.|+|++|.|+.++ .|..+++|+.|+|++|+|+.+++ |..+++|+.|+|++|+|++++ +..|..+++|+.|+|++|
T Consensus 34 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC-HHHhcCCCCCCEEEeCCC
Confidence 3999999999885 68999999999999999999987 899999999999999999973 356889999999999999
Q ss_pred cCCCCC
Q 005381 613 EIGAHS 618 (699)
Q Consensus 613 ~I~~lp 618 (699)
++...+
T Consensus 113 ~~~c~c 118 (170)
T 3g39_A 113 PWDCAC 118 (170)
T ss_dssp CBCTTB
T ss_pred CCCCCc
Confidence 997653
No 203
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.91 E-value=1.6e-09 Score=115.66 Aligned_cols=81 Identities=22% Similarity=0.215 Sum_probs=73.5
Q ss_pred EEccCC-CCCcccCCCCCcccCEEEccC-CCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNL-SLSRLGSFDKLLWVQMLDLSH-NELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n-~l~~l~~l~~L~~L~~LdLS~-N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
++++++ .|+.+|.+..+++|+.|+|++ |.|+.+++ |..|++|+.|+|++|+|+++ .+..|..+++|+.|+|++|+
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCc
Confidence 888888 899998888999999999996 99998886 99999999999999999997 34678999999999999999
Q ss_pred CCCCCc
Q 005381 614 IGAHSI 619 (699)
Q Consensus 614 I~~lp~ 619 (699)
|+.+|.
T Consensus 92 l~~~~~ 97 (347)
T 2ifg_A 92 LESLSW 97 (347)
T ss_dssp CSCCCS
T ss_pred cceeCH
Confidence 999873
No 204
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.90 E-value=4.3e-08 Score=91.80 Aligned_cols=151 Identities=10% Similarity=0.060 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 005381 59 YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (699)
Q Consensus 59 ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dpr 138 (699)
..+|..++.+....+. +++++..+++++..+|++..+|...+.++... +.+++++++++++++.+|.
T Consensus 8 ~~~~~~~~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~ 74 (186)
T 3as5_A 8 QVYYRDKGISHAKAGR------------YSQAVMLLEQVYDADAFDVDVALHLGIAYVKT-GAVDRGTELLERSLADAPD 74 (186)
T ss_dssp HHHHHHHHHHHHHHTC------------HHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhcC------------HHHHHHHHHHHHHhCccChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCC
Confidence 4566677777776654 89999999999999999999999999999877 6999999999999999999
Q ss_pred ChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCC
Q 005381 139 NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (699)
Q Consensus 139 N~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP 218 (699)
+..+|...+.+....+.+ ++.+++++++++.+|.+..+|...+.++...+. ++++++.+.+++..+|
T Consensus 75 ~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKY-DLAVPLLIKVAEANPINFNVRFRLGVALDNLGR------------FDEAIDSFKIALGLRP 141 (186)
T ss_dssp CHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhcCH-HHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc------------HHHHHHHHHHHHhcCc
Confidence 999999999999999988 689999999999999999999999988877644 7999999999999999
Q ss_pred CCchhHHHHHHHHcCcC
Q 005381 219 DDQSGWFYHLWLLDQTV 235 (699)
Q Consensus 219 ~d~SaW~Y~~~Ll~~~~ 235 (699)
++..+|+.+..++....
T Consensus 142 ~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHcC
Confidence 99999988777775543
No 205
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.90 E-value=2.1e-09 Score=124.19 Aligned_cols=111 Identities=23% Similarity=0.117 Sum_probs=75.5
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCC
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAH 617 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~l 617 (699)
|++++|.++.++. .+++|+.|++++|.|+.+|.. +++|+.|+|++|.|++++ ..+++|+.|+|++|.|+.+
T Consensus 186 L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp-----~~l~~L~~L~Ls~N~L~~l 256 (622)
T 3g06_A 186 LSVSDNQLASLPT--LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP-----VLPSELKELMVSGNRLTSL 256 (622)
T ss_dssp EECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCC
T ss_pred EECCCCCCCCCCC--ccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCC-----CCCCcCcEEECCCCCCCcC
Confidence 7777777776553 246677777777777766652 367788888888887762 3456788888888888877
Q ss_pred CcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCC
Q 005381 618 SIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIV 675 (699)
Q Consensus 618 p~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~ 675 (699)
|. .++.+..+++++|.+. .+|..+.++ +|+.|+|++|++.
T Consensus 257 p~-------~~~~L~~L~Ls~N~L~-----------~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 257 PM-------LPSGLLSLSVYRNQLT-----------RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CC-------CCTTCCEEECCSSCCC-----------SCCGGGGGSCTTCEEECCSCCCC
T ss_pred Cc-------ccccCcEEeCCCCCCC-----------cCCHHHhhccccCEEEecCCCCC
Confidence 63 1122333456666553 346678888 9999999999993
No 206
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.4e-08 Score=90.90 Aligned_cols=117 Identities=9% Similarity=-0.041 Sum_probs=106.2
Q ss_pred CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHH
Q 005381 102 FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNR 181 (699)
Q Consensus 102 PKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R 181 (699)
|....+|..++..+.+. +.++++++.++++++++|.+..+|..++.+...++.+ ++.+++++++++.+|.+..+|..+
T Consensus 1 p~~a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l 78 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTK-SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF-PEAIADCNKAIEKDPNFVRAYIRK 78 (126)
T ss_dssp CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCcHHHHHHH
Confidence 44567899999998877 6999999999999999999999999999999999998 789999999999999999999999
Q ss_pred HHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhC------CCCchhHHHHHHHHc
Q 005381 182 SLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTD------PDDQSGWFYHLWLLD 232 (699)
Q Consensus 182 ~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~d------P~d~SaW~Y~~~Ll~ 232 (699)
+.++..++. ++++++.+.+++..+ |++..+|..+.-+..
T Consensus 79 g~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 79 ATAQIAVKE------------YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHTTC------------HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhC------------HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999988755 899999999999999 999999988766553
No 207
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.89 E-value=1.7e-08 Score=104.75 Aligned_cols=162 Identities=9% Similarity=-0.026 Sum_probs=136.8
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChH
Q 005381 27 LQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG 106 (699)
Q Consensus 27 ~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~ 106 (699)
...........|.+ ++|+..+.++|..+|++..+|...+.++...++ +++++..+++++..+|....
T Consensus 120 ~~~~a~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~------------~~~A~~~l~~~~~~~p~~~~ 186 (287)
T 3qou_A 120 XAQQAMQLMQESNY-TDALPLLXDAWQLSNQNGEIGLLLAETLIALNR------------SEDAEAVLXTIPLQDQDTRY 186 (287)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC------------HHHHHHHHTTSCGGGCSHHH
T ss_pred HHHHHHHHHhCCCH-HHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC------------HHHHHHHHHhCchhhcchHH
Confidence 33444555677887 899999999999999999999999999998876 89999999999999997766
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCc--hHHHHHHHHH
Q 005381 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN--YSAWHNRSLL 184 (699)
Q Consensus 107 aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN--~SAW~~R~~l 184 (699)
.+...+..+... +..+++++.+.++++.+|.+..+|...+-++...|++ +++++.+.++++.+|.+ ..+|...+.+
T Consensus 187 ~~~~~~~~l~~~-~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~-~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 187 QGLVAQIELLXQ-AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRN-EEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHHHHH-HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhh-cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccH-HHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 665555555544 3567899999999999999999999999999999998 78999999999999999 8899999999
Q ss_pred HHHhhhhhccCccchhchHHHHHHHHHHHHH
Q 005381 185 LSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (699)
Q Consensus 185 l~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~ 215 (699)
+..+++ .++++..+.+++.
T Consensus 265 ~~~~g~------------~~~a~~~~r~al~ 283 (287)
T 3qou_A 265 LAALGT------------GDALASXYRRQLY 283 (287)
T ss_dssp HHHHCT------------TCHHHHHHHHHHH
T ss_pred HHHcCC------------CCcHHHHHHHHHH
Confidence 988865 3566666666653
No 208
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.89 E-value=9.6e-11 Score=115.09 Aligned_cols=130 Identities=22% Similarity=0.273 Sum_probs=101.8
Q ss_pred hhhccCCCCCCCCCCCCeEEccCC--CCCccc-CCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCc
Q 005381 520 SRCFHYSNSPSNRGSPMCLQLKNL--SLSRLG-SFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALE 596 (699)
Q Consensus 520 ~~~~~l~~l~~l~L~~~~L~Ls~n--~l~~l~-~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~ 596 (699)
..+.....+..+++.. +.+.+. .++.++ .+..+++|+.|+|++|.++.+|.+..+++|+.|++++|.|+.+ |.
T Consensus 12 ~~~~~~~~l~~l~l~~--~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l--~~ 87 (198)
T 1ds9_A 12 RIFEERKSVVATEAEK--VELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKI--EN 87 (198)
T ss_dssp HHHHHTTCCCCTTCSE--EECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSC--SS
T ss_pred HHHHhcccccCcchhe--eEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccc--cc
Confidence 3344556677777777 777655 566666 7889999999999999999998899999999999999999977 45
Q ss_pred cccccccccccccccccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCC
Q 005381 597 PIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIV 675 (699)
Q Consensus 597 ~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~ 675 (699)
.+..+++|+.|+|++|.|+.+| .+..+ +|+.|+|++|.|.
T Consensus 88 ~~~~~~~L~~L~L~~N~l~~l~---------------------------------------~~~~l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQIASLS---------------------------------------GIEKLVNLRVLYMSNNKIT 128 (198)
T ss_dssp HHHHHHHCSEEEEEEEECCCHH---------------------------------------HHHHHHHSSEEEESEEECC
T ss_pred hhhcCCcCCEEECcCCcCCcCC---------------------------------------ccccCCCCCEEECCCCcCC
Confidence 6677899999999999998864 23344 7999999999994
Q ss_pred C-ccchHHHhhcCCcccccc
Q 005381 676 N-EKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 676 ~-~~~~~~~~~~l~~L~~LD 694 (699)
. +.. ..+..+++|+.||
T Consensus 129 ~~~~~--~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 129 NWGEI--DKLAALDKLEDLL 146 (198)
T ss_dssp CHHHH--HHHTTTTTCSEEE
T ss_pred chhHH--HHHhcCCCCCEEE
Confidence 2 211 2456788888775
No 209
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.89 E-value=1.7e-10 Score=125.21 Aligned_cols=131 Identities=15% Similarity=0.212 Sum_probs=72.3
Q ss_pred EEccCCCCC--ccc----CCCCCcccCEEEccCCCCC------CCc-CCccccccceeecccCCCCCC---CCCcccccc
Q 005381 538 LQLKNLSLS--RLG----SFDKLLWVQMLDLSHNELR------SIE-GLEALQLLSCLNLSNNILGSF---TALEPIRQL 601 (699)
Q Consensus 538 L~Ls~n~l~--~l~----~l~~L~~L~~LdLS~N~L~------~l~-~l~~L~~L~~L~Ls~N~l~~l---~~~~~l~~l 601 (699)
|+|++|.++ .++ .+..+++|+.|+|++|.|+ .++ .+..+++|+.|+|++|.|+.. ..+..+..+
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 777777775 222 3456667777777777775 344 266677777777777776310 013445666
Q ss_pred ccccccccccccCCCCCcc-ccccc--CCCCCcccccCCCCccceeecCCcchhhhhhccC-CCC-CccEEEecCCCC
Q 005381 602 KSLRALNISYNEIGAHSID-TTKYL--CSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFIL-KGL-NLTQFDIVGNAI 674 (699)
Q Consensus 602 ~~L~~L~Ls~N~I~~lp~~-~~~~l--~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l-~~L-~L~~LdLs~N~l 674 (699)
++|+.|+|++|.|+..... ....+ ..++-+..+++++|.+... ....+|..+ .++ +|+.|+|++|++
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~------g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD------AVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH------HHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH------HHHHHHHHHHhcCCCceEEEccCCcC
Confidence 7777777777777654210 01122 1123333345555555321 011234444 445 777777777777
No 210
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.88 E-value=3.3e-09 Score=118.05 Aligned_cols=135 Identities=14% Similarity=-0.071 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC---------------hH
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS---------------YG 106 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs---------------y~ 106 (699)
++|++.+..++..+|+...+|+.++.++...++ |++++..+++++..+|.+ ..
T Consensus 251 ~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 318 (457)
T 1kt0_A 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK------------YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318 (457)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred ccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC------------HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence 367777888899999999999999999988865 999999999999999999 69
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 005381 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (699)
Q Consensus 107 aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~ 186 (699)
+|..++.++.+. +.+++++.+|+++++++|.|..+|..|+.++..++.+ +++++++.++++.+|.|..+|..++.+..
T Consensus 319 ~~~nla~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~-~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 319 AFLNLAMCYLKL-REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEF-ESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999988 6999999999999999999999999999999999998 78999999999999999999999999988
Q ss_pred Hhhh
Q 005381 187 NLLK 190 (699)
Q Consensus 187 ~l~~ 190 (699)
.++.
T Consensus 397 ~~~~ 400 (457)
T 1kt0_A 397 KAKE 400 (457)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8755
No 211
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.88 E-value=2.3e-09 Score=103.31 Aligned_cols=80 Identities=30% Similarity=0.401 Sum_probs=72.8
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
|+|++|.|+.++ .|..+++|+.|+|++|+|+.+|. |..+++|+.|+|++|+|+.++ +..+..+++|+.|+|++|+
T Consensus 38 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSC
T ss_pred EEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC-HHHhccccCCCEEEeCCCC
Confidence 999999999885 68999999999999999999988 799999999999999999873 3458899999999999999
Q ss_pred CCCCC
Q 005381 614 IGAHS 618 (699)
Q Consensus 614 I~~lp 618 (699)
+...+
T Consensus 117 ~~c~~ 121 (174)
T 2r9u_A 117 WDCEC 121 (174)
T ss_dssp BCTTB
T ss_pred ccccc
Confidence 98764
No 212
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.88 E-value=1.7e-08 Score=94.91 Aligned_cols=116 Identities=9% Similarity=-0.027 Sum_probs=106.5
Q ss_pred CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHH
Q 005381 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHN 180 (699)
Q Consensus 101 nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~ 180 (699)
+++...+|..++.++.+. +.+++++++++++++++|.+..+|..++.+...++.+ ++.+++++++++.+|.+..+|..
T Consensus 7 ~~~~a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMAR-KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQH-EKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp CCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHH
Confidence 566778999999999877 6999999999999999999999999999999999998 78999999999999999999999
Q ss_pred HHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005381 181 RSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (699)
Q Consensus 181 R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~L 230 (699)
++.++..++. ++++++++.+++.++|++..+|+.+...
T Consensus 85 lg~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 85 LGLARFDMAD------------YKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHTTC------------HHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHccC------------HHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999988755 8999999999999999999999766554
No 213
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.87 E-value=1.1e-10 Score=126.74 Aligned_cols=187 Identities=16% Similarity=0.114 Sum_probs=114.4
Q ss_pred HhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCccc------CCCCC--
Q 005381 483 ELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLG------SFDKL-- 554 (699)
Q Consensus 483 ~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~------~l~~L-- 554 (699)
..+++|++||+++|.+... ....++..+..+.+++. |+|++|.++..+ .+..+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~------------~~~~l~~~l~~~~~L~~-------L~L~~n~l~~~~~~~l~~~l~~l~~ 151 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPT------------AQEPLIDFLSKHTPLEH-------LYLHNNGLGPQAGAKIARALQELAV 151 (386)
T ss_dssp TTCTTCCEEECCSCCCCTT------------THHHHHHHHHHCTTCCE-------EECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred hhCCcccEEECCCCcCCHH------------HHHHHHHHHHhCCCCCE-------EECcCCCCCHHHHHHHHHHHHHHhh
Confidence 5677888888888773211 01122223333444444 888888887332 23334
Q ss_pred -------cccCEEEccCCCCC--CCc---C-CccccccceeecccCCCCCCC----CCccccccccccccccccccCCCC
Q 005381 555 -------LWVQMLDLSHNELR--SIE---G-LEALQLLSCLNLSNNILGSFT----ALEPIRQLKSLRALNISYNEIGAH 617 (699)
Q Consensus 555 -------~~L~~LdLS~N~L~--~l~---~-l~~L~~L~~L~Ls~N~l~~l~----~~~~l~~l~~L~~L~Ls~N~I~~l 617 (699)
++|++|+|++|.++ .++ . +..+++|+.|+|++|.|+... .+..+..+++|+.|+|++|.|+..
T Consensus 152 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~ 231 (386)
T 2ca6_A 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231 (386)
T ss_dssp HHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH
T ss_pred hhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH
Confidence 78899999999885 444 2 667888999999999887210 112567788899999999988421
Q ss_pred Cc-ccccccCCCCCcccccCCCCccceeecCCcchhhhhhccC--CCC-CccEEEecCCCCCCc---cchHHHhhcCCcc
Q 005381 618 SI-DTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFIL--KGL-NLTQFDIVGNAIVNE---KFKSFLIKVLPGL 690 (699)
Q Consensus 618 p~-~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l--~~L-~L~~LdLs~N~l~~~---~~~~~~~~~l~~L 690 (699)
.. ..+..+..++-+..+++++|.+... ....++..+ ..+ +|+.|+|++|.|... .+...+...+++|
T Consensus 232 g~~~l~~~l~~~~~L~~L~L~~n~i~~~------~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L 305 (386)
T 2ca6_A 232 GSSALAIALKSWPNLRELGLNDCLLSAR------GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305 (386)
T ss_dssp HHHHHHHHGGGCTTCCEEECTTCCCCHH------HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHccCCCcCEEECCCCCCchh------hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCc
Confidence 10 0112333444444557777766321 112234555 347 999999999999421 2444444668888
Q ss_pred cccc
Q 005381 691 KWLD 694 (699)
Q Consensus 691 ~~LD 694 (699)
+.||
T Consensus 306 ~~L~ 309 (386)
T 2ca6_A 306 LFLE 309 (386)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 8876
No 214
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.87 E-value=3.2e-08 Score=102.76 Aligned_cols=167 Identities=7% Similarity=-0.076 Sum_probs=131.4
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCC------chHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC---
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPE------LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS--- 104 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~------~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs--- 104 (699)
.+..|.+ ++|++.+.+++.+.++ ...+|+..+.++..+++ +++++.++++++...|+.
T Consensus 47 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~------------~~~A~~~~~~Al~l~~~~g~~ 113 (292)
T 1qqe_A 47 YRLRKEL-NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN------------SVNAVDSLENAIQIFTHRGQF 113 (292)
T ss_dssp HHHTTCT-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHHHcCCH
Confidence 4567777 8999999999999643 26789999999988865 899999999999988765
Q ss_pred ---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC------hhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCch
Q 005381 105 ---YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN------FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (699)
Q Consensus 105 ---y~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN------~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~ 175 (699)
..+|...+.++....+.+++++++++++++++|.+ ..+|...+.+...+|.+ ++++++++++++.+|.+.
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~ 192 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY-IEASDIYSKLIKSSMGNR 192 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHhcCC
Confidence 46888889999873259999999999999998865 46788889999999998 789999999999998875
Q ss_pred H-------HHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHH
Q 005381 176 S-------AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFY 226 (699)
Q Consensus 176 S-------AW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y 226 (699)
. +|..++.+...++. +++++.++.+++.++|+...++..
T Consensus 193 ~~~~~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 193 LSQWSLKDYFLKKGLCQLAATD------------AVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp TTGGGHHHHHHHHHHHHHHTTC------------HHHHHHHHHGGGCC---------H
T ss_pred cccHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCCCCcHHH
Confidence 4 46666766666543 799999999999999998776543
No 215
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.87 E-value=2.8e-08 Score=94.32 Aligned_cols=133 Identities=8% Similarity=-0.024 Sum_probs=116.6
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHH-HHhcCCC-hHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFV-AASMNRS-EEDELK 162 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~v-l~~l~~~-~e~EL~ 162 (699)
..+++++..++.++..+|.+..+|...+.++... +.+++++.+++++++++|.+..+|...+.+ ....+.+ .++.++
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQ-NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 4578899999999999999999999999999887 699999999999999999999999999999 6677776 367899
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005381 163 YTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (699)
Q Consensus 163 ~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~L 230 (699)
+++++++.+|.+..+|...+.++...+. ++++++.+.+++..+|++...+....-+
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFMQAN------------YAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHccc------------HHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 9999999999999999999998887754 7999999999999999998777554433
No 216
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.86 E-value=2.1e-08 Score=95.22 Aligned_cols=128 Identities=11% Similarity=0.029 Sum_probs=113.3
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH-
Q 005381 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI- 114 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~- 114 (699)
..+.+ ++|+..+.+++..+|++..+|...+.+....+. +++++..+++++..+|.+..+|...+.+
T Consensus 22 ~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~la~~l 88 (177)
T 2e2e_A 22 SQQNP-EAQLQALQDKIRANPQNSEQWALLGEYYLWQND------------YSNSLLAYRQALQLRGENAELYAALATVL 88 (177)
T ss_dssp ------CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hccCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45555 689999999999999999999999999988865 8999999999999999999999999999
Q ss_pred HHhCCCCh--HHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHH
Q 005381 115 LSKGHSSI--DNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAW 178 (699)
Q Consensus 115 L~~~~~~~--~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW 178 (699)
.... +.+ ++++..++++++.+|.+..+|...+.+....|.+ +++++++.++++.+|.+...+
T Consensus 89 ~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 89 YYQA-SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANY-AQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHT-TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTCCTTSCHH
T ss_pred HHhc-CCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccH-HHHHHHHHHHHhhCCCCccHH
Confidence 4444 577 9999999999999999999999999999999998 789999999999999997654
No 217
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.86 E-value=5e-08 Score=98.80 Aligned_cols=155 Identities=6% Similarity=-0.108 Sum_probs=130.9
Q ss_pred HHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhCCCChHHHHHH
Q 005381 52 LETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS---YGAWHHRKWILSKGHSSIDNELRL 128 (699)
Q Consensus 52 L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs---y~aW~hR~w~L~~~~~~~~~EL~~ 128 (699)
...+|+...++..++..+...++ +++++..+++++..+|.+ ..+|..++.++.+. +.+++++..
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~------------~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~ 74 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGK------------YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQN-KEYLLAASE 74 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTC------------HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHh-CcHHHHHHH
Confidence 45789999999999999888765 999999999999999999 99999999999987 699999999
Q ss_pred HHHHHHhCCCC---hhhhhHHHHHHHh--------cCCChHHHHHHHHHHHHhccCchHHH-----------------HH
Q 005381 129 LDKFQKADSRN---FHAWNYRRFVAAS--------MNRSEEDELKYTEDMICNNFSNYSAW-----------------HN 180 (699)
Q Consensus 129 ~~k~L~~dprN---~haW~yR~~vl~~--------l~~~~e~EL~~~~~~I~~n~sN~SAW-----------------~~ 180 (699)
++++++.+|.+ ..+|..++.+... .+.+ +++++++.++++.+|.+..++ .+
T Consensus 75 ~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~ 153 (261)
T 3qky_A 75 YERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDT-RKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYE 153 (261)
T ss_dssp HHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHH-HHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhH-HHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998865 5688899999888 7776 689999999999999998777 55
Q ss_pred HHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC---chhHHHHHHHHc
Q 005381 181 RSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD---QSGWFYHLWLLD 232 (699)
Q Consensus 181 R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d---~SaW~Y~~~Ll~ 232 (699)
++.++...+ .+++++..+.+++..+|++ ..+|+++..++.
T Consensus 154 la~~~~~~g------------~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 154 AARLYERRE------------LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp HHHHHHHTT------------CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcc------------CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 566555543 3899999999999999995 457777766654
No 218
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.84 E-value=5.2e-08 Score=101.13 Aligned_cols=171 Identities=9% Similarity=-0.013 Sum_probs=143.3
Q ss_pred CCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 005381 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK 117 (699)
Q Consensus 38 ~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~ 117 (699)
|..+.+.+. ..+-..-|+...++...+..+...++ +++++..+++++..+|++..+|+..+-++.+
T Consensus 98 g~~~~~~l~--~~l~~~lp~~~~~~~~~a~~~~~~g~------------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~ 163 (287)
T 3qou_A 98 GPQPEEAIR--ALLDXVLPREEELXAQQAMQLMQESN------------YTDALPLLXDAWQLSNQNGEIGLLLAETLIA 163 (287)
T ss_dssp SCCCHHHHH--HHHHHHSCCHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHH--HHHHHHcCCchhhHHHHHHHHHhCCC------------HHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence 444544333 33334459999999999888877765 8999999999999999999999999999988
Q ss_pred CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCcc
Q 005381 118 GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFV 197 (699)
Q Consensus 118 ~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~ 197 (699)
. ++++++++.+++++..+|.+...+...+..+...+.. +++++.+.++++.+|.|..+|...+.++...++
T Consensus 164 ~-g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~-~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~------- 234 (287)
T 3qou_A 164 L-NRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAAD-TPEIQQLQQQVAENPEDAALATQLALQLHQVGR------- 234 (287)
T ss_dssp T-TCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------
T ss_pred C-CCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhccc-CccHHHHHHHHhcCCccHHHHHHHHHHHHHccc-------
Confidence 7 6999999999999999997776666666666666665 567888899999999999999999999988755
Q ss_pred chhchHHHHHHHHHHHHHhCCCC--chhHHHHHHHHcCcCC
Q 005381 198 SKEKVLPDEYEFVHQAIFTDPDD--QSGWFYHLWLLDQTVR 236 (699)
Q Consensus 198 ~~~~~~~eeL~~~~~ai~~dP~d--~SaW~Y~~~Ll~~~~~ 236 (699)
++++++.+.+++..+|++ ..+|..+.-++....+
T Consensus 235 -----~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 235 -----NEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp -----HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred -----HHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 899999999999999998 8899988888876543
No 219
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=1.2e-08 Score=97.42 Aligned_cols=154 Identities=9% Similarity=-0.035 Sum_probs=123.2
Q ss_pred CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005381 55 NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQK 134 (699)
Q Consensus 55 nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~ 134 (699)
||.....+..++..+...++ +++++..+++++..+|++..+|...+.++... +.+++++..++++++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~------------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~-g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGE------------HAQALNVIQTLSDELQSRGDVKLAKADCLLET-KQFELAQELLATIPL 68 (176)
T ss_dssp ----CTTHHHHHHHHHHTTC------------HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHT-TCHHHHHHHHTTCCG
T ss_pred CCCHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHhhh
Confidence 55566666777777766654 89999999999999999999999999999987 699999999999999
Q ss_pred hCCCChhhhhHHHHHHH-hcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHH
Q 005381 135 ADSRNFHAWNYRRFVAA-SMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQA 213 (699)
Q Consensus 135 ~dprN~haW~yR~~vl~-~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~a 213 (699)
.+| +...+...+.+.. ..+.. .++++.++++++.+|.|..+|...+.++...++ ++++++.+.++
T Consensus 69 ~~p-~~~~~~~~~~~~~~~~~~~-~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~ 134 (176)
T 2r5s_A 69 EYQ-DNSYKSLIAKLELHQQAAE-SPELKRLEQELAANPDNFELACELAVQYNQVGR------------DEEALELLWNI 134 (176)
T ss_dssp GGC-CHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHH
T ss_pred ccC-ChHHHHHHHHHHHHhhccc-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc------------HHHHHHHHHHH
Confidence 999 7766655554421 11122 246889999999999999999999999988755 89999999999
Q ss_pred HHhCCCC--chhHHHHHHHHcCcC
Q 005381 214 IFTDPDD--QSGWFYHLWLLDQTV 235 (699)
Q Consensus 214 i~~dP~d--~SaW~Y~~~Ll~~~~ 235 (699)
+..+|+. ..+|..+.-++....
T Consensus 135 l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 135 LKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHhCcccChHHHHHHHHHHHHHhC
Confidence 9999985 558888777776543
No 220
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.82 E-value=6e-09 Score=115.92 Aligned_cols=105 Identities=18% Similarity=0.174 Sum_probs=62.8
Q ss_pred HHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcccCCCCCcccCEEE
Q 005381 482 LELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLGSFDKLLWVQMLD 561 (699)
Q Consensus 482 l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~~l~~L~~L~~Ld 561 (699)
++.+++|++||+++|.+.. ++. . ..++ +.|++++|.++.++.+..+++|+.|+
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~----------------~---~~~L-------~~L~L~~n~l~~l~~~~~l~~L~~L~ 201 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPD----------------L---PPSL-------EFIAAGNNQLEELPELQNLPFLTAIY 201 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCC----------------C---CTTC-------CEEECCSSCCSSCCCCTTCTTCCEEE
T ss_pred cCCCCCCCEEECCCCcCcc-cCC----------------C---cccc-------cEEECcCCcCCcCccccCCCCCCEEE
Confidence 5678888999998887321 111 0 0111 12666666666666666666666666
Q ss_pred ccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCCC
Q 005381 562 LSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHS 618 (699)
Q Consensus 562 LS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp 618 (699)
+++|.++.+|.+. ++|+.|++++|.++.+ | .++.+++|+.|++++|+++.+|
T Consensus 202 l~~N~l~~l~~~~--~~L~~L~l~~n~l~~l--p-~~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 202 ADNNSLKKLPDLP--LSLESIVAGNNILEEL--P-ELQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp CCSSCCSSCCCCC--TTCCEEECCSSCCSSC--C-CCTTCTTCCEEECCSSCCSSCC
T ss_pred CCCCcCCcCCCCc--CcccEEECcCCcCCcc--c-ccCCCCCCCEEECCCCcCCccc
Confidence 6666666555421 3566666666666654 2 3556666666666666666554
No 221
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.81 E-value=1.2e-07 Score=106.67 Aligned_cols=171 Identities=7% Similarity=-0.030 Sum_probs=143.9
Q ss_pred CCCCc------HHHHHHHHHHHH-hCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCCh-HHH
Q 005381 37 NHIYS------KEAVELSTKLLE-TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY-GAW 108 (699)
Q Consensus 37 ~~~~~------~eaL~~~~~~L~-~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy-~aW 108 (699)
.|.+. ++|++.+++++. ++|++..+|.....+....+. ++++...+++++..+|++. .+|
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~ 359 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK------------YEKVHSIYNRLLAIEDIDPTLVY 359 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHSSSSCHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC------------HHHHHHHHHHHhCccccCchHHH
Confidence 57764 499999999997 899999999999999888765 8999999999999999996 599
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHH-HhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 005381 109 HHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVA-ASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSN 187 (699)
Q Consensus 109 ~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl-~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~ 187 (699)
...+.++.+. +.++++.+.++++++..|.+++.|...+++. ...|.+ ++..+.++++++.+|.+..+|...+.++..
T Consensus 360 ~~~~~~~~~~-~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~-~~A~~~~e~al~~~p~~~~~~~~~~~~~~~ 437 (530)
T 2ooe_A 360 IQYMKFARRA-EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK-SVAFKIFELGLKKYGDIPEYVLAYIDYLSH 437 (530)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh-cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 9999888765 4789999999999999999998887766663 346666 789999999999999999999888877665
Q ss_pred hhhhhccCccchhchHHHHHHHHHHHHHhCCCCch----hHH-HHHHHHcC
Q 005381 188 LLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS----GWF-YHLWLLDQ 233 (699)
Q Consensus 188 l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~S----aW~-Y~~~Ll~~ 233 (699)
++. ++++...+.+|+...|.+.. .|. |.++....
T Consensus 438 ~g~------------~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 438 LNE------------DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp TTC------------HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred CCC------------HhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 543 68999999999998877655 894 56665543
No 222
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.81 E-value=2.2e-07 Score=81.75 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 005381 60 TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN 139 (699)
Q Consensus 60 taWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN 139 (699)
.+|+..+.+....+. +++++..++.++..+|.+..+|...+.+.... +.+++++.+++++++.+|.+
T Consensus 2 ~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~ 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGD------------YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPRS 68 (136)
T ss_dssp HHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHcCc------------HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHCCCc
Confidence 467777777776654 89999999999999999999999998888766 58999999999999999999
Q ss_pred hhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCC
Q 005381 140 FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD 219 (699)
Q Consensus 140 ~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~ 219 (699)
..+|...+.+....+.+ ++.+++++++++.+|.+..+|...+.++...+. ++++++.+.+++..+|+
T Consensus 69 ~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 69 AEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD------------YDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC------------HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc------------HHHHHHHHHHHHccCCC
Confidence 99999999999999988 789999999999999999999998888776543 79999999999999986
Q ss_pred C
Q 005381 220 D 220 (699)
Q Consensus 220 d 220 (699)
.
T Consensus 136 ~ 136 (136)
T 2fo7_A 136 S 136 (136)
T ss_dssp C
T ss_pred C
Confidence 3
No 223
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.80 E-value=7e-08 Score=108.65 Aligned_cols=174 Identities=9% Similarity=-0.046 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHh-------hhccCCCCchhhhhhHHHHHHHHHHHHH-hCCCChHHHHHHHH
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQH-------KLTENDSDPDSLKSILDEELRVVESALR-QNFKSYGAWHHRKW 113 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~-------l~~~~~~~~~~~~~~~~eEL~~~~~~L~-~nPKsy~aW~hR~w 113 (699)
++++.+++++|..+|.+..+|...+.++.. .+. .+......++++..+++++. .+|++..+|...+-
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~-----~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~ 329 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGD-----MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 329 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTC-----CHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccc-----hhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 478899999999999999999999988875 322 11111112488999999997 89999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCCh-hhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhh
Q 005381 114 ILSKGHSSIDNELRLLDKFQKADSRNF-HAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (699)
Q Consensus 114 ~L~~~~~~~~~EL~~~~k~L~~dprN~-haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~ 192 (699)
+..+. +.++++.+.++++++++|.++ .+|...+.+..+.+.+ ++..+.+.++++..|.++..|...+.+....
T Consensus 330 ~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~---- 403 (530)
T 2ooe_A 330 YEESR-MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI-KSGRMIFKKAREDARTRHHVYVTAALMEYYC---- 403 (530)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH----
T ss_pred HHHhc-CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCH-HHHHHHHHHHHhccCCchHHHHHHHHHHHHH----
Confidence 99877 699999999999999999996 5999998888888776 6789999999999998887776555442211
Q ss_pred ccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 193 VEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 193 ~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
.+.++++...+.+|+..+|++..+|..+.-++..
T Consensus 404 -------~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~ 437 (530)
T 2ooe_A 404 -------SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 437 (530)
T ss_dssp -------TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred -------cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 1236899999999999999999999866666544
No 224
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.80 E-value=8e-08 Score=102.24 Aligned_cols=129 Identities=11% Similarity=0.002 Sum_probs=112.0
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHhhhccCCCCchhhhhhHHHH
Q 005381 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPEL---------------YTAWNYRKLAVQHKLTENDSDPDSLKSILDEE 90 (699)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~---------------ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eE 90 (699)
.+..........|.+ ++|+..+.++|.++|++ ..+|+.++.++..+++ ++++
T Consensus 149 ~~~~~g~~~~~~g~~-~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~------------~~~A 215 (336)
T 1p5q_A 149 IVKERGTVYFKEGKY-KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA------------FSAA 215 (336)
T ss_dssp HHHHHHHHHHHHTCH-HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC------------HHHH
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC------------HHHH
Confidence 333444445567777 89999999999999999 6999999999998865 9999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHH
Q 005381 91 LRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMI 168 (699)
Q Consensus 91 L~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I 168 (699)
+..++++|..+|++..+|+.++.++... +.++++++.++++++++|.|..+|...+.+...++.+.+.+.+.+.+++
T Consensus 216 ~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 216 IESCNKALELDSNNEKGLSRRGEAHLAV-NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 6999999999999999999999999999999988887555555555544
No 225
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.80 E-value=7.4e-08 Score=85.51 Aligned_cols=120 Identities=11% Similarity=0.062 Sum_probs=109.6
Q ss_pred CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005381 55 NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQK 134 (699)
Q Consensus 55 nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~ 134 (699)
.|....+|..++.+....+. +++++..+++++..+|++..+|..++.++... +.+++++++++++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~ 78 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGD------------YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL-LEFQLALKDCEECIQ 78 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTC------------SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTT-TCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHHH
Confidence 57788999999998887754 89999999999999999999999999999876 699999999999999
Q ss_pred hCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Q 005381 135 ADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNL 188 (699)
Q Consensus 135 ~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l 188 (699)
.+|.+..+|...+.+....+.+ +++++++.++++.+|.+..+|...+.++...
T Consensus 79 ~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 79 LEPTFIKGYTRKAAALEAMKDY-TKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 9999999999999999999998 7899999999999999999999888776543
No 226
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.80 E-value=1.3e-09 Score=117.30 Aligned_cols=134 Identities=19% Similarity=0.177 Sum_probs=70.6
Q ss_pred EEccCCCCCccc------CCCCCc-ccCEEEccCCCCCCCcC------Cccc-cccceeecccCCCCCCCC---Cccccc
Q 005381 538 LQLKNLSLSRLG------SFDKLL-WVQMLDLSHNELRSIEG------LEAL-QLLSCLNLSNNILGSFTA---LEPIRQ 600 (699)
Q Consensus 538 L~Ls~n~l~~l~------~l~~L~-~L~~LdLS~N~L~~l~~------l~~L-~~L~~L~Ls~N~l~~l~~---~~~l~~ 600 (699)
|+|++|.++..+ .+..++ +|+.|+|++|.|+.... +..+ ++|+.|+|++|.|+.... +..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 777777666322 233343 67777777777754432 2333 467777777777665210 122323
Q ss_pred -cccccccccccccCCCCCcccc-cccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 601 -LKSLRALNISYNEIGAHSIDTT-KYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 601 -l~~L~~L~Ls~N~I~~lp~~~~-~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
.++|+.|+|++|.|+..+.... ..+..++-+..+++++|.+..+.. .....++..+..+ +|+.|||++|+|
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~---~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSK---EQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCH---HHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCH---HHHHHHHHHhccCCceEEEecCCCcC
Confidence 2467777777777766543111 112222333333444444221111 1123345567777 788888888888
No 227
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.79 E-value=5.4e-08 Score=100.71 Aligned_cols=171 Identities=13% Similarity=-0.005 Sum_probs=129.2
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHH
Q 005381 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAW 108 (699)
Q Consensus 29 ~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW 108 (699)
.........|.+ ++|+..+.++|..+|++..+|..++.++..+++ +++++..+++++..+|.+..+|
T Consensus 9 ~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~ 75 (281)
T 2c2l_A 9 EQGNRLFVGRKY-PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ------------PEQALADCRRALELDGQSVKAH 75 (281)
T ss_dssp HHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHTTSCTTCHHHH
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC------------HHHHHHHHHHHHHhCCCCHHHH
Confidence 334445567777 799999999999999999999999999988865 8999999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Q 005381 109 HHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNL 188 (699)
Q Consensus 109 ~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l 188 (699)
+.++.++... +.+++++..+.++++++|.+........|..... .+..++....-...+.+...+.+.+.++.
T Consensus 76 ~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~l~~l~~-- 148 (281)
T 2c2l_A 76 FFLGQCQLEM-ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI----AKKKRWNSIEERRIHQESELHSYLTRLIA-- 148 (281)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH----HHHHHHHHHHHTCCCCCCHHHHHHHHHHH--
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHH--
Confidence 9999999987 6999999999999999997754443333332221 12223333333467777777777776653
Q ss_pred hhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005381 189 LKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 189 ~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll 231 (699)
+.++++++.+.+|+..+|++.....-..-+.
T Consensus 149 ------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 179 (281)
T 2c2l_A 149 ------------AERERELEECQRNHEGHEDDGHIRAQQACIE 179 (281)
T ss_dssp ------------HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHH
T ss_pred ------------HHHHHHHHHHHhhhccccchhhhhhHHHHHH
Confidence 2268899999999999998876655444333
No 228
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.78 E-value=5.4e-09 Score=111.96 Aligned_cols=81 Identities=22% Similarity=0.194 Sum_probs=70.5
Q ss_pred eEEccCCCCCccc--CCCCCcccCEEEccCCCC-CCCcC--Cccccccce-eecccCCCCCCCCCccccccccccccccc
Q 005381 537 CLQLKNLSLSRLG--SFDKLLWVQMLDLSHNEL-RSIEG--LEALQLLSC-LNLSNNILGSFTALEPIRQLKSLRALNIS 610 (699)
Q Consensus 537 ~L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L-~~l~~--l~~L~~L~~-L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls 610 (699)
.|+|++|.|+.++ .|.++++|++|+|++|.+ +.+|. |.++++|.. +.+++|+|+.++ +..|..+++|+.|+++
T Consensus 34 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L~~L~l~ 112 (350)
T 4ay9_X 34 ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLIS 112 (350)
T ss_dssp EEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTCCEEEEE
T ss_pred EEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhcccccccccc
Confidence 3999999999987 689999999999999998 55765 889998765 677889999873 4778999999999999
Q ss_pred cccCCCCC
Q 005381 611 YNEIGAHS 618 (699)
Q Consensus 611 ~N~I~~lp 618 (699)
+|+|+.+|
T Consensus 113 ~n~l~~~~ 120 (350)
T 4ay9_X 113 NTGIKHLP 120 (350)
T ss_dssp EECCSSCC
T ss_pred ccccccCC
Confidence 99999887
No 229
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.78 E-value=1.6e-09 Score=114.66 Aligned_cols=146 Identities=17% Similarity=0.224 Sum_probs=79.0
Q ss_pred EEccCC-CCCc--cc-CCCCCcccCEEEccCC-CCCC--CcC-Ccccc-ccceeecccCC--CCCCCCCccccccccccc
Q 005381 538 LQLKNL-SLSR--LG-SFDKLLWVQMLDLSHN-ELRS--IEG-LEALQ-LLSCLNLSNNI--LGSFTALEPIRQLKSLRA 606 (699)
Q Consensus 538 L~Ls~n-~l~~--l~-~l~~L~~L~~LdLS~N-~L~~--l~~-l~~L~-~L~~L~Ls~N~--l~~l~~~~~l~~l~~L~~ 606 (699)
|++++| .++. ++ .+..+++|++|++++| .++. ++. +..++ +|+.|++++|. ++.-..+..+..+++|+.
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~ 226 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence 777777 5653 33 3566777777777777 6653 444 66677 77777777773 332111234456677777
Q ss_pred ccccccc-CCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHh
Q 005381 607 LNISYNE-IGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLI 684 (699)
Q Consensus 607 L~Ls~N~-I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~ 684 (699)
|++++|. ++... ...+..++.+..+++++|.. . . ......+..+ +|+.|+|++| ++...+ ..+.
T Consensus 227 L~l~~~~~l~~~~---~~~l~~l~~L~~L~l~~~~~-~-~-------~~~~~~l~~~~~L~~L~l~~~-i~~~~~-~~l~ 292 (336)
T 2ast_B 227 LDLSDSVMLKNDC---FQEFFQLNYLQHLSLSRCYD-I-I-------PETLLELGEIPTLKTLQVFGI-VPDGTL-QLLK 292 (336)
T ss_dssp EECTTCTTCCGGG---GGGGGGCTTCCEEECTTCTT-C-C-------GGGGGGGGGCTTCCEEECTTS-SCTTCH-HHHH
T ss_pred EeCCCCCcCCHHH---HHHHhCCCCCCEeeCCCCCC-C-C-------HHHHHHHhcCCCCCEEeccCc-cCHHHH-HHHH
Confidence 7777776 44321 12223333333344444431 0 0 0111245567 8888888888 643333 2333
Q ss_pred hcCCccccccCccC
Q 005381 685 KVLPGLKWLDGEQL 698 (699)
Q Consensus 685 ~~l~~L~~LD~~~i 698 (699)
..++.|+ |++..+
T Consensus 293 ~~l~~L~-l~~n~l 305 (336)
T 2ast_B 293 EALPHLQ-INCSHF 305 (336)
T ss_dssp HHSTTSE-ESCCCS
T ss_pred hhCcceE-EecccC
Confidence 4577765 454433
No 230
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.75 E-value=4.7e-07 Score=83.69 Aligned_cols=133 Identities=8% Similarity=-0.023 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 005381 59 YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (699)
Q Consensus 59 ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dpr 138 (699)
..+|...+.+....+. +++++..+++++..+|++..+|..++.++... +.++++++.++++++.+|.
T Consensus 13 ~~~~~~~a~~~~~~~~------------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~ 79 (166)
T 1a17_A 13 AEELKTQANDYFKAKD------------YENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKK 79 (166)
T ss_dssp HHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcc
Confidence 4567777777776654 99999999999999999999999999999887 6999999999999999999
Q ss_pred ChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHH
Q 005381 139 NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (699)
Q Consensus 139 N~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~ 215 (699)
+..+|...+.+....+.+ ++.++++.++++.+|.+..+|.+.+.....+. .+.++++++.+.++..
T Consensus 80 ~~~~~~~~a~~~~~~~~~-~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~----------~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 80 YIKGYYRRAASNMALGKF-RAALRDYETVVKVKPHDKDAKMKYQECNKIVK----------QKAFERAIAGDEHKRS 145 (166)
T ss_dssp CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----------HHHHHHHHHcccchHH
Confidence 999999999999999998 78999999999999999999976655533221 1346788888776654
No 231
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.75 E-value=1.3e-07 Score=83.24 Aligned_cols=122 Identities=11% Similarity=0.022 Sum_probs=110.4
Q ss_pred hCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005381 54 TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQ 133 (699)
Q Consensus 54 ~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L 133 (699)
.+|....+|...+.+....+. +++++..+++++..+|++..+|..++.++... +.++++++++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~ 73 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVEN------------FEAAVHFYGKAIELNPANAVYFCNRAAAYSKL-GNYAGAVQDCERAI 73 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccC------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-hchHHHHHHHHHHH
Confidence 456677888888888877754 89999999999999999999999999999877 69999999999999
Q ss_pred HhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Q 005381 134 KADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLL 189 (699)
Q Consensus 134 ~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~ 189 (699)
+.+|.+..+|...+.+....+.+ ++.++++.++++.+|.+..+|...+.+...++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 74 CIDPAYSKAYGRMGLALSSLNKH-VEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred hcCccCHHHHHHHHHHHHHhCCH-HHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 99999999999999999999998 78999999999999999999999988877664
No 232
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.74 E-value=8.2e-10 Score=116.89 Aligned_cols=175 Identities=17% Similarity=0.121 Sum_probs=112.5
Q ss_pred hcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCcc-c-CCCCCcccCEEE
Q 005381 484 LYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRL-G-SFDKLLWVQMLD 561 (699)
Q Consensus 484 ~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l-~-~l~~L~~L~~Ld 561 (699)
.+.+|++||+++|.+.. ..++..+..+.+++. |+|++|.++.. + .+..+++|++|+
T Consensus 91 ~~~~L~~L~L~~~~l~~---------------~~~~~~~~~~~~L~~-------L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEV---------------STLHGILSQCSKLQN-------LSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp CCBCCCEEECTTCEECH---------------HHHHHHHTTBCCCSE-------EECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred cCCCCCEEEccCCCcCH---------------HHHHHHHhhCCCCCE-------EeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 46778888887776211 112222333344444 89999988732 2 677899999999
Q ss_pred ccCC-CCCC--CcC-CccccccceeecccC-CCCCCCCCccccccc-ccccccccccc--CCCCCcccccccCCCCCccc
Q 005381 562 LSHN-ELRS--IEG-LEALQLLSCLNLSNN-ILGSFTALEPIRQLK-SLRALNISYNE--IGAHSIDTTKYLCSSPLSHS 633 (699)
Q Consensus 562 LS~N-~L~~--l~~-l~~L~~L~~L~Ls~N-~l~~l~~~~~l~~l~-~L~~L~Ls~N~--I~~lp~~~~~~l~~l~ll~l 633 (699)
|++| .++. ++. +..+++|+.|++++| .++....+..+..++ +|+.|+|++|. ++... ....+..++-+..
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~--l~~~~~~~~~L~~ 226 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD--LSTLVRRCPNLVH 226 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH--HHHHHHHCTTCSE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHH--HHHHHhhCCCCCE
Confidence 9999 6763 666 888999999999999 887522235577788 99999999994 43211 1112222333344
Q ss_pred ccCCCCc-cceeecCCcchhhhhhccCCCC-CccEEEecCCC-CCCccchHHHhhcCCcccccc
Q 005381 634 VGSEWNH-GQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNA-IVNEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 634 l~l~~N~-l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~-l~~~~~~~~~~~~l~~L~~LD 694 (699)
+++++|. +. ...+..+..+ +|+.|+|++|. +....+ ..+..+++|+.||
T Consensus 227 L~l~~~~~l~----------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~~~~L~~L~ 278 (336)
T 2ast_B 227 LDLSDSVMLK----------NDCFQEFFQLNYLQHLSLSRCYDIIPETL--LELGEIPTLKTLQ 278 (336)
T ss_dssp EECTTCTTCC----------GGGGGGGGGCTTCCEEECTTCTTCCGGGG--GGGGGCTTCCEEE
T ss_pred EeCCCCCcCC----------HHHHHHHhCCCCCCEeeCCCCCCCCHHHH--HHHhcCCCCCEEe
Confidence 4556655 21 1234567788 99999999995 433222 2245688888886
No 233
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.74 E-value=3.8e-07 Score=84.28 Aligned_cols=126 Identities=16% Similarity=0.082 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCCh
Q 005381 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY 105 (699)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy 105 (699)
.+..........|.+ ++|+..+.+++..+|++..+|..++.++...+. +++++..+++++..+|++.
T Consensus 15 ~~~~~a~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~a~~~~~~~~ 81 (166)
T 1a17_A 15 ELKTQANDYFKAKDY-ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC------------YGYALGDATRAIELDKKYI 81 (166)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCcccH
Confidence 344444455567787 799999999999999999999999999988865 8999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHH--HHhcCCChHHHHHHHHH
Q 005381 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFV--AASMNRSEEDELKYTED 166 (699)
Q Consensus 106 ~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~v--l~~l~~~~e~EL~~~~~ 166 (699)
.+|...+.++... +.++++++.++++++.+|.+..+|.+.+.+ ....+.+ ++.++++.+
T Consensus 82 ~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~ 142 (166)
T 1a17_A 82 KGYYRRAASNMAL-GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF-ERAIAGDEH 142 (166)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH-HHHHHcccc
Confidence 9999999999987 699999999999999999999999766555 3333443 344444333
No 234
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.72 E-value=6.1e-07 Score=78.83 Aligned_cols=125 Identities=21% Similarity=0.236 Sum_probs=112.6
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~ 114 (699)
...|++ ++|+..+.+++..+|++..+|...+.+....++ +++++..+++++..+|.+..+|...+.+
T Consensus 12 ~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 12 YKQGDY-DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD------------YDEAIEYYQKALELDPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHcCcH-HHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC------------HHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 345666 799999999999999999999998888877754 8999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCc
Q 005381 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN 174 (699)
Q Consensus 115 L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN 174 (699)
+... +.++++++.++++++.+|.+..+|...+.+....+.+ ++.++++.++++.+|.+
T Consensus 79 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 79 YYKQ-GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHSTTC
T ss_pred HHHh-cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccH-HHHHHHHHHHHccCCCC
Confidence 8876 6999999999999999999999999999999999988 67899999999988863
No 235
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.71 E-value=3e-07 Score=82.60 Aligned_cols=120 Identities=8% Similarity=-0.060 Sum_probs=105.5
Q ss_pred HhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 005381 53 ETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKF 132 (699)
Q Consensus 53 ~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~ 132 (699)
..+|....+|...+.+....+. +++++..+++++..+|++..+|..++.++... +.+++++..++++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a 69 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRK------------YPEAAACYGRAITRNPLVAVYYTNRALCYLKM-QQPEQALADCRRA 69 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCc------------HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 4678899999999999988765 99999999999999999999999999999987 6999999999999
Q ss_pred HHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccC-----chHHHHHHHHHHH
Q 005381 133 QKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS-----NYSAWHNRSLLLS 186 (699)
Q Consensus 133 L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~s-----N~SAW~~R~~ll~ 186 (699)
++++|.+..+|...+.+....+.+ ++.++++.++++.+|. +..++.....+..
T Consensus 70 l~~~p~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 70 LELDGQSVKAHFFLGQCQLEMESY-DEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 6899999999999998 5566655554443
No 236
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.71 E-value=3.3e-08 Score=92.71 Aligned_cols=112 Identities=13% Similarity=0.031 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHh------------------CCCchHHHHHHHHHHHhhhccCCCCchhhhhh
Q 005381 25 RVLQSQFLHNHHNHIYSKEAVELSTKLLET------------------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSI 86 (699)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~------------------nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~ 86 (699)
..+..........|.| ++|+..+.++|.+ +|....+|..++.++..++.
T Consensus 12 ~~~~~~G~~~~~~~~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~------------ 78 (162)
T 3rkv_A 12 EALRQKGNELFVQKDY-KEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD------------ 78 (162)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc------------
Confidence 3445555556678888 8999999999999 66666777777777666654
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh-hhhhHHHHHH
Q 005381 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF-HAWNYRRFVA 150 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~-haW~yR~~vl 150 (699)
+++++..++++|..+|.+..+|+.++.++... +.+++++..++++++++|.|. .++...+.+.
T Consensus 79 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 79 LHEAEETSSEVLKREETNEKALFRRAKARIAA-WKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-hcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 66777777777777777777777777776665 467777777777777777666 3344433333
No 237
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.71 E-value=7.5e-08 Score=109.47 Aligned_cols=136 Identities=10% Similarity=-0.126 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
..+++++..++++++.+|++..+|...+.++... +.++++++.++++++++|.+..+|...+.+....+.+ +++++++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGM-GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRH-AEAAVLL 80 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHH
Confidence 3478999999999999999999999999999877 6999999999999999999999999999999999998 7899999
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCc
Q 005381 165 EDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (699)
Q Consensus 165 ~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~ 234 (699)
+++++.+|.+..+|...+.++..+++ ++++++.+.+++..+|++..+|..+..++...
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQ------------AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999887754 79999999999999999999999888887665
No 238
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.71 E-value=7.6e-10 Score=122.36 Aligned_cols=33 Identities=12% Similarity=-0.009 Sum_probs=20.7
Q ss_pred CccEEEecCCCCCCcc--chHHHhhcCCccccccC
Q 005381 663 NLTQFDIVGNAIVNEK--FKSFLIKVLPGLKWLDG 695 (699)
Q Consensus 663 ~L~~LdLs~N~l~~~~--~~~~~~~~l~~L~~LD~ 695 (699)
+|+.|+|++|.|.... .....+..+++|+.||-
T Consensus 371 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred ceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence 7888888888884211 12233455778877653
No 239
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.71 E-value=5.1e-07 Score=79.28 Aligned_cols=115 Identities=14% Similarity=0.048 Sum_probs=102.4
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHH
Q 005381 28 QSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGA 107 (699)
Q Consensus 28 ~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~a 107 (699)
..........+.+ ++|+..+.+++..+|++..+|..++.+....+. +++++..+++++..+|++..+
T Consensus 16 ~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~ 82 (131)
T 2vyi_A 16 KTEGNEQMKVENF-EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN------------YAGAVQDCERAICIDPAYSKA 82 (131)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHccCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc------------hHHHHHHHHHHHhcCccCHHH
Confidence 3334444566777 799999999999999999999999999988765 899999999999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCC
Q 005381 108 WHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS 156 (699)
Q Consensus 108 W~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~ 156 (699)
|...+.++... +.+++++.+++++++.+|.+..+|...+.+...++.+
T Consensus 83 ~~~~~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 83 YGRMGLALSSL-NKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999987 6999999999999999999999999999988887764
No 240
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.70 E-value=9.7e-08 Score=106.09 Aligned_cols=124 Identities=10% Similarity=0.003 Sum_probs=105.1
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHhhhccCCCCchhhhhhHHHH
Q 005381 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPEL---------------YTAWNYRKLAVQHKLTENDSDPDSLKSILDEE 90 (699)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~---------------ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eE 90 (699)
.+..........+.| ++|+..|.++|.++|++ ..+|+.++.++..+++ ++++
T Consensus 270 ~~~~~G~~~~~~g~~-~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~------------~~~A 336 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKY-MQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE------------YTKA 336 (457)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC------------HHHH
T ss_pred HHHHHHHHHHhCCCH-HHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC------------HHHH
Confidence 444445555667888 89999999999999999 6999999999999865 9999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHH
Q 005381 91 LRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKY 163 (699)
Q Consensus 91 L~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~ 163 (699)
+..++++|..+|++..+|+.|+.++..+ +.+++++..++++++++|.|..+|..++.+...++.+.+.+-+.
T Consensus 337 ~~~~~~al~~~p~~~~a~~~~g~a~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 408 (457)
T 1kt0_A 337 VECCDKALGLDSANEKGLYRRGEAQLLM-NEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRI 408 (457)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 69999999999999999999999999999998887764444443
No 241
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.70 E-value=1.8e-07 Score=87.56 Aligned_cols=117 Identities=9% Similarity=-0.008 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHh------------------CCCChHHHHHHHHHHHhCCC
Q 005381 59 YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ------------------NFKSYGAWHHRKWILSKGHS 120 (699)
Q Consensus 59 ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~------------------nPKsy~aW~hR~w~L~~~~~ 120 (699)
..+|..++..+...+. |++++..+.+++.. +|.+..+|..++.++.+. +
T Consensus 11 a~~~~~~G~~~~~~~~------------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-~ 77 (162)
T 3rkv_A 11 VEALRQKGNELFVQKD------------YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI-G 77 (162)
T ss_dssp HHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 4677788888877654 99999999999998 888899999999999987 6
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCch-HHHHHHHHHHHHhh
Q 005381 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY-SAWHNRSLLLSNLL 189 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~-SAW~~R~~ll~~l~ 189 (699)
.+++++..|+++++++|.+..+|..++.+...+|.+ +++++++.++++.+|.|. .++.....+...+.
T Consensus 78 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~-~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 78 DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKL-DEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 789999999999999999 55666666655553
No 242
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.70 E-value=5.1e-07 Score=89.65 Aligned_cols=166 Identities=7% Similarity=-0.041 Sum_probs=126.1
Q ss_pred chHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005381 58 LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY---GAWHHRKWILSKGHSSIDNELRLLDKFQK 134 (699)
Q Consensus 58 ~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy---~aW~hR~w~L~~~~~~~~~EL~~~~k~L~ 134 (699)
...++..++..+...+. +++++..+++++..+|.+. .+|..++.++.+. +.++++++.++++++
T Consensus 3 ~~~~~~~~a~~~~~~g~------------~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~ 69 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGN------------WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIR 69 (225)
T ss_dssp CHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 34577778877777654 9999999999999999875 6899999999987 699999999999999
Q ss_pred hCCCChh---hhhHHHHHHHhc------------------CCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhh-
Q 005381 135 ADSRNFH---AWNYRRFVAASM------------------NRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK- 192 (699)
Q Consensus 135 ~dprN~h---aW~yR~~vl~~l------------------~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~- 192 (699)
.+|++.. ||.+++.+...+ +.+ +++++.++++|+.+|.+..+|.-+..+........
T Consensus 70 ~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 70 LNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQA-RAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHH-HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHH-HHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence 9999986 899999887653 233 67899999999999999988854433211110000
Q ss_pred ----ccCccchhchHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHcCcCCC
Q 005381 193 ----VEGFVSKEKVLPDEYEFVHQAIFTDPDDQ---SGWFYHLWLLDQTVRV 237 (699)
Q Consensus 193 ----~~~~~~~~~~~~eeL~~~~~ai~~dP~d~---SaW~Y~~~Ll~~~~~~ 237 (699)
-+..-...+.+++++..+++++..+|++. .+|+++..++....+.
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence 00011123458999999999999999986 5788888877665443
No 243
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.69 E-value=1.5e-07 Score=83.49 Aligned_cols=119 Identities=8% Similarity=-0.022 Sum_probs=108.1
Q ss_pred hCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHH
Q 005381 100 QNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWH 179 (699)
Q Consensus 100 ~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~ 179 (699)
..|.+..+|..++.++... +.+++++++++++++.+|.+..+|..++.+....+.+ ++.+++++++++.+|.+..+|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~ 88 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQK-GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF-QLALKDCEECIQLEPTFIKGYT 88 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHT-TCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCH-HHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhCCCchHHHH
Confidence 3578889999999999877 6999999999999999999999999999999888888 7899999999999999999999
Q ss_pred HHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHc
Q 005381 180 NRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (699)
Q Consensus 180 ~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~ 232 (699)
.++.++..++. ++++++.+.+++..+|++..+|..+..++.
T Consensus 89 ~la~~~~~~~~------------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 89 RKAAALEAMKD------------YTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHHHHTTC------------HHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHhh------------HHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999887744 799999999999999999999988777664
No 244
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=3.5e-07 Score=88.90 Aligned_cols=136 Identities=7% Similarity=-0.005 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh
Q 005381 61 AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF 140 (699)
Q Consensus 61 aWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~ 140 (699)
.++.++.+....+. +++++..+++++ +| +..+|..++.++... +.++++++.++++++.+|.+.
T Consensus 8 ~~~~~g~~~~~~~~------------~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~ 71 (213)
T 1hh8_A 8 SLWNEGVLAADKKD------------WKGALDAFSAVQ--DP-HSRICFNIGCMYTIL-KNMTEAEKAFTRSINRDKHLA 71 (213)
T ss_dssp HHHHHHHHHHHTTC------------HHHHHHHHHTSS--SC-CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhCC------------HHHHHHHHHHHc--CC-ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCccch
Confidence 34556666666544 899999999996 34 788999999999887 699999999999999999999
Q ss_pred hhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCch----------------HHHHHHHHHHHHhhhhhccCccchhchHH
Q 005381 141 HAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY----------------SAWHNRSLLLSNLLKRKVEGFVSKEKVLP 204 (699)
Q Consensus 141 haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~----------------SAW~~R~~ll~~l~~~~~~~~~~~~~~~~ 204 (699)
.+|..++.+....+.+ +++++++.++++..|.+. .+|.+++.++..++. ++
T Consensus 72 ~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~ 138 (213)
T 1hh8_A 72 VAYFQRGMLYYQTEKY-DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE------------WK 138 (213)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC------------HH
T ss_pred HHHHHHHHHHHHcccH-HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC------------HH
Confidence 9999999999999998 789999999999888877 999999999887754 79
Q ss_pred HHHHHHHHHHHhCCCCchhHH
Q 005381 205 DEYEFVHQAIFTDPDDQSGWF 225 (699)
Q Consensus 205 eeL~~~~~ai~~dP~d~SaW~ 225 (699)
++++.+.+++..+|++.....
T Consensus 139 ~A~~~~~~al~~~p~~~~~~~ 159 (213)
T 1hh8_A 139 KAEEQLALATSMKSEPRHSKI 159 (213)
T ss_dssp HHHHHHHHHHTTCCSGGGGHH
T ss_pred HHHHHHHHHHHcCcccccchH
Confidence 999999999999998866543
No 245
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.69 E-value=1.8e-07 Score=84.06 Aligned_cols=120 Identities=8% Similarity=-0.095 Sum_probs=107.3
Q ss_pred HhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHH
Q 005381 99 RQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAW 178 (699)
Q Consensus 99 ~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW 178 (699)
..+|.+..+|...+.++... +.+++++.++.++++.+|.+..+|..++.+....+.+ ++.++++.++++.+|.+..+|
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~ 80 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVG-RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP-EQALADCRRALELDGQSVKAH 80 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHHHh-CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCchhHHHH
Confidence 35788999999999999877 6999999999999999999999999999999999998 689999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCC-----CchhHHHHHHHHc
Q 005381 179 HNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD-----DQSGWFYHLWLLD 232 (699)
Q Consensus 179 ~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~-----d~SaW~Y~~~Ll~ 232 (699)
..++.++..++. ++++++.+.+++..+|+ +..+|...+.+..
T Consensus 81 ~~l~~~~~~~~~------------~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 81 FFLGQCQLEMES------------YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh------------HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 999999888754 79999999999999999 7888877766554
No 246
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=4.5e-07 Score=88.10 Aligned_cols=129 Identities=9% Similarity=-0.023 Sum_probs=114.7
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHH
Q 005381 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAW 108 (699)
Q Consensus 29 ~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW 108 (699)
.........|.+ ++|+..+.+++ +| +..+|+.++.+....+. +++++..+++++..+|++..+|
T Consensus 11 ~~g~~~~~~~~~-~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~ 74 (213)
T 1hh8_A 11 NEGVLAADKKDW-KGALDAFSAVQ--DP-HSRICFNIGCMYTILKN------------MTEAEKAFTRSINRDKHLAVAY 74 (213)
T ss_dssp HHHHHHHHTTCH-HHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhCCH-HHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCccchHHH
Confidence 334445567787 79999999996 44 77899999999988865 9999999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh----------------hhhhHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 005381 109 HHRKWILSKGHSSIDNELRLLDKFQKADSRNF----------------HAWNYRRFVAASMNRSEEDELKYTEDMICNNF 172 (699)
Q Consensus 109 ~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~----------------haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~ 172 (699)
..++.++... +.++++++.++++++.+|.+. .+|.+++.+....|.+ +++++++.++++.+|
T Consensus 75 ~~lg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 75 FQRGMLYYQT-EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW-KKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHc-ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH-HHHHHHHHHHHHcCc
Confidence 9999999987 699999999999999999887 9999999999999998 789999999999999
Q ss_pred Cch
Q 005381 173 SNY 175 (699)
Q Consensus 173 sN~ 175 (699)
.+.
T Consensus 153 ~~~ 155 (213)
T 1hh8_A 153 EPR 155 (213)
T ss_dssp SGG
T ss_pred ccc
Confidence 873
No 247
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.68 E-value=1.2e-09 Score=120.61 Aligned_cols=172 Identities=16% Similarity=0.044 Sum_probs=108.6
Q ss_pred HHHHHhcccccccCCCCCccccchhhhHHhhhhccchHHHhhhhc-cCCCCCCCCCCCCeEEccCCCCCc-----cc-CC
Q 005381 479 EEVLELYNDLMRLDPTHVQYYKDQHSLVLLQQVTSNWESLLSRCF-HYSNSPSNRGSPMCLQLKNLSLSR-----LG-SF 551 (699)
Q Consensus 479 ~~~l~~l~~L~~LDls~n~~~~~l~sl~~l~~l~~~~~~l~~~~~-~l~~l~~l~L~~~~L~Ls~n~l~~-----l~-~l 551 (699)
.+.+..++.|+.||+++|.+.. .. ...+..... ....++. |++++|.++. ++ .+
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~-~~-----------~~~l~~~~~~~~~~L~~-------L~L~~n~l~~~~~~~l~~~l 280 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGD-VG-----------MAELCPGLLHPSSRLRT-------LWIWECGITAKGCGDLCRVL 280 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHH-HH-----------HHHHHHHHTSTTCCCCE-------EECTTSCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCccEEeccCCcCCh-HH-----------HHHHHHHHhcCCCCceE-------EECcCCCCCHHHHHHHHHHH
Confidence 5566778888888888886211 00 111111111 1233333 9999999986 33 56
Q ss_pred CCCcccCEEEccCCCCCCCcC--C-----ccccccceeecccCCCCCCC---CCccccccccccccccccccCCCCCccc
Q 005381 552 DKLLWVQMLDLSHNELRSIEG--L-----EALQLLSCLNLSNNILGSFT---ALEPIRQLKSLRALNISYNEIGAHSIDT 621 (699)
Q Consensus 552 ~~L~~L~~LdLS~N~L~~l~~--l-----~~L~~L~~L~Ls~N~l~~l~---~~~~l~~l~~L~~L~Ls~N~I~~lp~~~ 621 (699)
..+++|+.|+|++|.++.... + ...++|+.|++++|.++... .+..+..+++|+.|+|++|.|+......
T Consensus 281 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence 678999999999999854322 2 23368999999999987631 1234566789999999999987653211
Q ss_pred c-cccCC-CCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCC
Q 005381 622 T-KYLCS-SPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIV 675 (699)
Q Consensus 622 ~-~~l~~-l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~ 675 (699)
. ..+.. .+-+..+++++|.+.. .....+|..+..+ +|+.|+|++|+|.
T Consensus 361 l~~~l~~~~~~L~~L~L~~n~i~~------~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADCDVSD------SSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCH------HHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHcCCCCceEEEECCCCCCCh------hhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 1 11211 2233344667776531 1122456677778 9999999999994
No 248
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.67 E-value=1.9e-07 Score=83.72 Aligned_cols=103 Identities=6% Similarity=0.015 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHH
Q 005381 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLL 185 (699)
Q Consensus 106 ~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll 185 (699)
..|..++.++.+. +.+++++..++++++.+|.+..+|...+.+....|.+ ++++++++++++.+|.+..+|..++.++
T Consensus 18 ~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKL-ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD-GLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4577788887776 6999999999999999999999999999999999998 6899999999999999999999999999
Q ss_pred HHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCch
Q 005381 186 SNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS 222 (699)
Q Consensus 186 ~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~S 222 (699)
...++ ++++++.+.+++..+|++..
T Consensus 96 ~~~g~------------~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 96 TNEHN------------ANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHH------------HHHHHHHHHHHHC-------
T ss_pred HHcCC------------HHHHHHHHHHHHHhCcCCCC
Confidence 88865 79999999999999998753
No 249
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.64 E-value=1e-07 Score=101.57 Aligned_cols=136 Identities=10% Similarity=-0.044 Sum_probs=78.7
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCch-----------------HHHHHHHHHHHhhhccCCCCchhhhhhHH
Q 005381 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELY-----------------TAWNYRKLAVQHKLTENDSDPDSLKSILD 88 (699)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~y-----------------taWn~R~~~l~~l~~~~~~~~~~~~~~~~ 88 (699)
.+..........+.| ++|+..|.++|.++|++. .+|+.++.++..+++ ++
T Consensus 181 ~~~~~g~~~~~~g~~-~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~------------~~ 247 (338)
T 2if4_A 181 RRKMDGNSLFKEEKL-EEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR------------YD 247 (338)
T ss_dssp HHHHHHHHTCSSSCC-HHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC------------CH
T ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC------------HH
Confidence 344555566778888 899999999999999987 388888888877754 78
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHH
Q 005381 89 EELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMI 168 (699)
Q Consensus 89 eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I 168 (699)
+++..++++|..+|++..+|+.++.++... +.+++++..++++++++|.|..+|...+.+........+++.+.+.+++
T Consensus 248 ~A~~~~~~al~~~p~~~~a~~~lg~a~~~~-g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 248 EAIGHCNIVLTEEEKNPKALFRRGKAKAEL-GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHTTC----------------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888888888888888888876 5888888888888888888888888877775555444456667777777
Q ss_pred HhccCch
Q 005381 169 CNNFSNY 175 (699)
Q Consensus 169 ~~n~sN~ 175 (699)
..+|.+-
T Consensus 327 ~~~p~~~ 333 (338)
T 2if4_A 327 KGKDEGG 333 (338)
T ss_dssp -------
T ss_pred CCCCCCC
Confidence 7777653
No 250
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.64 E-value=1.2e-07 Score=89.50 Aligned_cols=98 Identities=12% Similarity=0.018 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC--
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH-- 119 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~-- 119 (699)
++|++.+++++.++|++..+|+..+.++..+++.. ...+....+++++..++++|+++|++..+|+..+-++....
T Consensus 19 eeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~--~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFH--SISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccc--hhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 68999999999999999999999999998886411 11223345789999999999999999999999999997542
Q ss_pred --------CChHHHHHHHHHHHHhCCCChh
Q 005381 120 --------SSIDNELRLLDKFQKADSRNFH 141 (699)
Q Consensus 120 --------~~~~~EL~~~~k~L~~dprN~h 141 (699)
+.+++++++|+++++++|.|..
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 2578888888888888887743
No 251
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.63 E-value=7e-08 Score=107.91 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=111.5
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~ 114 (699)
...|++ ++|++++.++|.++|++..+|+.++.++..+++ +++++..++++++.+|++..+|+.++.+
T Consensus 17 ~~~g~~-~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 17 FKAKDY-ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC------------YGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp TTTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHhCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345666 899999999999999999999999999998865 9999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHH--HHhcCCChHHHHHHHH-----------HHHHhccCchHHHHHH
Q 005381 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFV--AASMNRSEEDELKYTE-----------DMICNNFSNYSAWHNR 181 (699)
Q Consensus 115 L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~v--l~~l~~~~e~EL~~~~-----------~~I~~n~sN~SAW~~R 181 (699)
+... +.++++++.++++++++|.+..+|.+.+.+ +...+.+ +++++.++ ++++.+|+...+++..
T Consensus 84 ~~~~-g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 161 (477)
T 1wao_1 84 NMAL-GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF-ERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLED 161 (477)
T ss_dssp HHHH-TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHH-CCC------CCSTTTCCTTSSCCCCTTCCSCCCGG
T ss_pred HHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH-HHHhccccccchhHhhhhhhhcccccccccccccc
Confidence 9887 699999999999999999999999999888 5555665 46777777 8888888877666543
No 252
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=6.9e-07 Score=76.99 Aligned_cols=114 Identities=10% Similarity=-0.004 Sum_probs=102.3
Q ss_pred chHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 005381 58 LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADS 137 (699)
Q Consensus 58 ~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dp 137 (699)
...+|...+.+....+. +++++..+++++..+|.+..+|..++.+.... +.+++++..++++++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~ 69 (118)
T 1elw_A 3 QVNELKEKGNKALSVGN------------IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK-GDYQKAYEDGCKTVDLKP 69 (118)
T ss_dssp HHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHccc------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCc
Confidence 34677788887776654 89999999999999999999999999999876 699999999999999999
Q ss_pred CChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHH
Q 005381 138 RNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLL 185 (699)
Q Consensus 138 rN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll 185 (699)
.+..+|...+.+....+.+ ++.++++.++++.+|.+..+|...+.+.
T Consensus 70 ~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 70 DWGKGYSRKAAALEFLNRF-EEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp TCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999998 6899999999999999999998877653
No 253
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.61 E-value=2.4e-07 Score=79.31 Aligned_cols=108 Identities=6% Similarity=0.022 Sum_probs=99.7
Q ss_pred hCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005381 54 TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQ 133 (699)
Q Consensus 54 ~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L 133 (699)
++|++..+|...+.+....++ +++++..+++++..+|.+..+|..++.++... +.++++++++++++
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGN------------YTESIDLFEKAIQLDPEESKYWLMKGKALYNL-ERYEEAVDCYNYVI 67 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCC------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhh------------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHH
Confidence 478999999999999887755 89999999999999999999999999999887 69999999999999
Q ss_pred HhCCC--ChhhhhHHHHHHHhc-CCChHHHHHHHHHHHHhccCch
Q 005381 134 KADSR--NFHAWNYRRFVAASM-NRSEEDELKYTEDMICNNFSNY 175 (699)
Q Consensus 134 ~~dpr--N~haW~yR~~vl~~l-~~~~e~EL~~~~~~I~~n~sN~ 175 (699)
+.+|. +..+|...+.+...+ +.+ +++++++.+++..+|.+.
T Consensus 68 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 68 NVIEDEYNKDVWAAKADALRYIEGKE-VEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTSCCTTCHHHHHHHHHHHTTCSSCS-HHHHHHHHHHGGGCCCCC
T ss_pred HhCcccchHHHHHHHHHHHHHHhCCH-HHHHHHHHHHhhcccCCC
Confidence 99999 999999999999999 998 789999999999998763
No 254
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.61 E-value=1.8e-07 Score=88.36 Aligned_cols=119 Identities=9% Similarity=-0.033 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHH
Q 005381 84 KSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKY 163 (699)
Q Consensus 84 ~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~ 163 (699)
...+++++..+++++..+|++..+|...+-++... +.++...+..+ .+ ++++.+
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l-~~~~~g~~al~------------------------~~-~eAi~~ 68 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLEL-SQFHSISDAKQ------------------------MI-QEAITK 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHSCHHHHHH------------------------HH-HHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh-cccchhhhhHh------------------------HH-HHHHHH
Confidence 35578888888888888888888888887777754 22221111000 01 445555
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005381 164 TEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (699)
Q Consensus 164 ~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~ 229 (699)
++++|+++|.+..||++++.++..++.- ..+.....+.++++++++++|+.++|++...|..+.-
T Consensus 69 le~AL~ldP~~~~A~~~LG~ay~~lg~l-~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 69 FEEALLIDPKKDEAVWCIGNAYTSFAFL-TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhccc-CcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5555555555555555555555544321 0111112245899999999999999999877765443
No 255
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=6.4e-07 Score=81.03 Aligned_cols=121 Identities=12% Similarity=-0.017 Sum_probs=108.9
Q ss_pred HhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC---hhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCch
Q 005381 99 RQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN---FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (699)
Q Consensus 99 ~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN---~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~ 175 (699)
..+|++..+|..++...... +.+++++++++++++.+|.+ ..+|..++.+....+.+ ++.+++++++++.+|.+.
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~ 99 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKC-GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDY-DKAETEASKAIEKDGGDV 99 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTSCCH
T ss_pred ccchHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccH-HHHHHHHHHHHhhCccCH
Confidence 35788999999999998876 69999999999999999998 89999999999999988 789999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 176 SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 176 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
.+|..++.++..++. ++++++.+.+++..+|++..+|..+.-+...
T Consensus 100 ~~~~~~a~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 100 KALYRRSQALEKLGR------------LDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 999999999887754 7999999999999999999999877666543
No 256
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.61 E-value=1.2e-07 Score=98.27 Aligned_cols=178 Identities=7% Similarity=-0.087 Sum_probs=129.9
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHhh-hccCCCCchhhhhhHHHHHHHHHHHHHhCCCC--
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPEL------YTAWNYRKLAVQHK-LTENDSDPDSLKSILDEELRVVESALRQNFKS-- 104 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~------ytaWn~R~~~l~~l-~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs-- 104 (699)
....|.+ ++|+.++.++|.+.|+. ..+|+..+.++... ++ +++++..+++++..+|+.
T Consensus 87 ~~~~g~~-~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~------------~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 87 FKSGGNS-VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD------------YAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC------------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC------------HHHHHHHHHHHHHHHHhCCC
Confidence 3456677 89999999999998865 56888888888874 65 899999999999998865
Q ss_pred ----hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChh-------hhhHHHHHHHhcCCChHHHHHHHHHHHHhccC
Q 005381 105 ----YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFH-------AWNYRRFVAASMNRSEEDELKYTEDMICNNFS 173 (699)
Q Consensus 105 ----y~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~h-------aW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~s 173 (699)
..+|...+.++.+. +.+++++++++++++++|.+.. +|...+.+...+|.+ ++++.+++++++.+|+
T Consensus 154 ~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALD-GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA-VAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH-HHHHHHHHGGGCC---
T ss_pred hHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCC
Confidence 56788889999887 6999999999999999998865 466778888888988 7899999999999999
Q ss_pred chHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005381 174 NYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 174 N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll 231 (699)
...++..+. +..+...-.. ...+.++++++.+++++.++|.....|.=..-.+
T Consensus 232 ~~~~~~~~~--l~~l~~~~~~---~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 232 FADSRESNF--LKSLIDAVNE---GDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp ------HHH--HHHHHHHHHT---TCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHH--HHHHHHHHHc---CCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 887765433 2222211000 1224579999999999999997766554443333
No 257
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=7.7e-07 Score=80.52 Aligned_cols=118 Identities=10% Similarity=-0.054 Sum_probs=107.3
Q ss_pred HhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhCCCChHHHHHHH
Q 005381 53 ETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS---YGAWHHRKWILSKGHSSIDNELRLL 129 (699)
Q Consensus 53 ~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs---y~aW~hR~w~L~~~~~~~~~EL~~~ 129 (699)
..+|+...+|+.++......+. +++++..+++++..+|.+ ..+|..++.++... +.++++++.+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~ 88 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGD------------YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL-EDYDKAETEA 88 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTC------------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH-ccHHHHHHHH
Confidence 3578899999999998887755 999999999999999998 99999999999877 6999999999
Q ss_pred HHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHH
Q 005381 130 DKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (699)
Q Consensus 130 ~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~l 184 (699)
+++++.+|.+..+|..++.++...+.+ ++.++++.++++.+|.+..+|.....+
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 89 SKAIEKDGGDVKALYRRSQALEKLGRL-DQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHhhCccCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 999999999999999999999999998 789999999999999999998766554
No 258
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.60 E-value=4.6e-07 Score=87.77 Aligned_cols=122 Identities=8% Similarity=-0.050 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCch----------------HHHHHHHHHHHhhhccCCCCchhh
Q 005381 20 KAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELY----------------TAWNYRKLAVQHKLTENDSDPDSL 83 (699)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~y----------------taWn~R~~~l~~l~~~~~~~~~~~ 83 (699)
+.+....+..........|.| ++|+..+.+++.+.|++. .+|..++.++..++.
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------- 103 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEI-NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD--------- 103 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC---------
Confidence 333344555555666678888 799999999999999987 788888888777754
Q ss_pred hhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCC
Q 005381 84 KSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR 155 (699)
Q Consensus 84 ~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~ 155 (699)
+++++..+++++..+|++..+|..++.++... +.++++++.+.++++++|.+..+|...+.+...++.
T Consensus 104 ---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 104 ---YPKAIDHASKVLKIDKNNVKALYKLGVANMYF-GFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp ---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 78888888888888888888888888888766 578888888888888888888888877777666543
No 259
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.60 E-value=1.4e-07 Score=91.43 Aligned_cols=132 Identities=12% Similarity=-0.012 Sum_probs=114.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCCh----------------HHH
Q 005381 45 VELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY----------------GAW 108 (699)
Q Consensus 45 L~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy----------------~aW 108 (699)
.+.++......++...+|..++.++...++ +++++..+++++...|++. .+|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 24 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNE------------INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp CSGGGCCHHHHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred CchhhCCHHHHHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 333334444555566778888888877654 9999999999999999998 899
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Q 005381 109 HHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNL 188 (699)
Q Consensus 109 ~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l 188 (699)
..++.++... +.+++++.+++++++++|.+..+|..++.+...++.+ +++++++.++++.+|.+..+|...+.+...+
T Consensus 92 ~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 92 LNLATCYNKN-KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFL-EEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 9999999887 6999999999999999999999999999999999998 7899999999999999999999999888877
Q ss_pred hh
Q 005381 189 LK 190 (699)
Q Consensus 189 ~~ 190 (699)
+.
T Consensus 170 ~~ 171 (198)
T 2fbn_A 170 KE 171 (198)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 260
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.59 E-value=2.6e-07 Score=82.89 Aligned_cols=102 Identities=9% Similarity=0.024 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 005381 60 TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN 139 (699)
Q Consensus 60 taWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN 139 (699)
..|..++.++...++ +++++..++++++.+|++..+|...+.++... +.+++++..++++++++|.+
T Consensus 18 ~~~~~~g~~~~~~g~------------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~ 84 (121)
T 1hxi_A 18 ENPMEEGLSMLKLAN------------LAEAALAFEAVCQKEPEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKD 84 (121)
T ss_dssp SCHHHHHHHHHHTTC------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC
T ss_pred hhHHHHHHHHHHcCC------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Confidence 356777777776654 89999999999999999999999999999987 69999999999999999999
Q ss_pred hhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCch
Q 005381 140 FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (699)
Q Consensus 140 ~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~ 175 (699)
..+|...+.++...|.+ ++.+++++++++.+|.+.
T Consensus 85 ~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 85 IAVHAALAVSHTNEHNA-NAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCcCCC
Confidence 99999999999999988 689999999999999764
No 261
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=1.6e-06 Score=75.28 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=104.9
Q ss_pred hCCCc-hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 005381 54 TNPEL-YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKF 132 (699)
Q Consensus 54 ~nP~~-ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~ 132 (699)
.+|+. ..+|...+.+....+. +++++..+++++..+|.+..+|...+.++... +.+++++.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~ 69 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGD------------YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKA 69 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh-CCHHHHHHHHHHH
Confidence 45665 7788888888877754 89999999999999999999999999999877 6999999999999
Q ss_pred HHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 005381 133 QKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSN 187 (699)
Q Consensus 133 L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~ 187 (699)
++.+|.+..+|...+.+....+.+ ++.++++.++++.+|.+..++...+.+...
T Consensus 70 ~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 70 LELDPNNAEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhCCccHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 999999999999999999999988 789999999999999999999888776543
No 262
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=2.7e-08 Score=105.50 Aligned_cols=184 Identities=11% Similarity=0.061 Sum_probs=105.1
Q ss_pred cccccccCCCCCccc--cchhhhHHh-hhhccchHHHhhhhc-c--------CCCCCCCCCCCCeEEccCCCCCccc--C
Q 005381 485 YNDLMRLDPTHVQYY--KDQHSLVLL-QQVTSNWESLLSRCF-H--------YSNSPSNRGSPMCLQLKNLSLSRLG--S 550 (699)
Q Consensus 485 l~~L~~LDls~n~~~--~~l~sl~~l-~~l~~~~~~l~~~~~-~--------l~~l~~l~L~~~~L~Ls~n~l~~l~--~ 550 (699)
+.+|++||+++|... ......+.. .........++...| . ..+++. +.|.+ .++.|+ .
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~-------l~L~~-~i~~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEK-------VILSE-KIKNIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC--------CBCT-TCCEECTTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcE-------EECCc-cccchhHHH
Confidence 677999999999854 111111100 001000112222222 2 355555 78887 888887 7
Q ss_pred CCCCcccCEEEccCCCCCCCcC--Ccc-----------------------------------------------------
Q 005381 551 FDKLLWVQMLDLSHNELRSIEG--LEA----------------------------------------------------- 575 (699)
Q Consensus 551 l~~L~~L~~LdLS~N~L~~l~~--l~~----------------------------------------------------- 575 (699)
|.+|++|+.|++++|.+..++. |.+
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 9999999999999998644443 322
Q ss_pred -------------------------ccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCC
Q 005381 576 -------------------------LQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPL 630 (699)
Q Consensus 576 -------------------------L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~l 630 (699)
+++|+.|+|++|.++.++. ..|..|++|+.|+|.+| +..++...+.....
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~-~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~--- 274 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD-FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGR--- 274 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT-TTTTTCTTCCEEECCTT-CCEECTTTTTTCTT---
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH-hhhhCCCCCCEEECCcc-cceehHHHhhCChh---
Confidence 4566667777766666632 55667777777777766 66664323222222
Q ss_pred cc-cccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCcccccc
Q 005381 631 SH-SVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWLD 694 (699)
Q Consensus 631 l~-ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~LD 694 (699)
+. .+.+.. .++.+ .+.+|.++ +|+.|++++|.|. .+....+..+++|+.|.
T Consensus 275 L~~~l~l~~-~l~~I----------~~~aF~~c~~L~~l~l~~n~i~--~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 275 LAGTLELPA-SVTAI----------EFGAFMGCDNLRYVLATGDKIT--TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEEEEECT-TCCEE----------CTTTTTTCTTEEEEEECSSCCC--EECTTTTCTTCCCCEEE
T ss_pred ccEEEEEcc-cceEE----------chhhhhCCccCCEEEeCCCccC--ccchhhhcCCcchhhhc
Confidence 11 112222 11111 13588999 9999999999982 22223446788888764
No 263
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.58 E-value=2.4e-07 Score=79.30 Aligned_cols=108 Identities=11% Similarity=0.082 Sum_probs=98.9
Q ss_pred hCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccC--chHH
Q 005381 100 QNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS--NYSA 177 (699)
Q Consensus 100 ~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~s--N~SA 177 (699)
.+|.+..+|...+.+.... +.+++++.+++++++.+|.+..+|..++.+....+.+ ++.+++++++++.+|. +..+
T Consensus 1 l~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~ 78 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDA-GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERY-EEAVDCYNYVINVIEDEYNKDV 78 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSS-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTSCCTTCHHH
T ss_pred CCCCcHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCcccchHHH
Confidence 3789999999999999876 6999999999999999999999999999999999998 7899999999999999 9999
Q ss_pred HHHHHHHHHHh-hhhhccCccchhchHHHHHHHHHHHHHhCCCCc
Q 005381 178 WHNRSLLLSNL-LKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (699)
Q Consensus 178 W~~R~~ll~~l-~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~ 221 (699)
|..++.++..+ +. ++++++++.+++..+|.+.
T Consensus 79 ~~~l~~~~~~~~~~------------~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 79 WAAKADALRYIEGK------------EVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHTTCSSC------------SHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHhCC------------HHHHHHHHHHHhhcccCCC
Confidence 99999887766 55 6999999999999999875
No 264
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=9.9e-07 Score=75.98 Aligned_cols=113 Identities=9% Similarity=-0.016 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHH
Q 005381 105 YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (699)
Q Consensus 105 y~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~l 184 (699)
..+|...+.+.... +.+++++.+++++++.+|.+..+|...+.+....+.+ ++.++++.++++.+|.+..+|..++.+
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSV-GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY-QKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccH-HHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 46788888888776 6999999999999999999999999999999999998 789999999999999999999999999
Q ss_pred HHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005381 185 LSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 185 l~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll 231 (699)
+..++. ++++++.+.+++..+|++..+|..+.-+.
T Consensus 82 ~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNR------------FEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTC------------HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhh------------HHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 887754 79999999999999999999998766543
No 265
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.57 E-value=5.6e-08 Score=103.53 Aligned_cols=78 Identities=28% Similarity=0.311 Sum_probs=66.8
Q ss_pred EEccC-CCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccc
Q 005381 538 LQLKN-LSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYN 612 (699)
Q Consensus 538 L~Ls~-n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N 612 (699)
|+|++ |.|+.++ .|..|++|+.|+|++|+|+.+++ |..|++|+.|+|++|+|++++ +..+..+. |+.|+|.+|
T Consensus 36 L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 36 LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS-WKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp EECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC-STTTCSCC-CCEEECCSS
T ss_pred EEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC-HHHcccCC-ceEEEeeCC
Confidence 99996 9999887 69999999999999999988876 899999999999999999873 34455554 999999999
Q ss_pred cCCCC
Q 005381 613 EIGAH 617 (699)
Q Consensus 613 ~I~~l 617 (699)
++...
T Consensus 114 ~~~c~ 118 (347)
T 2ifg_A 114 PLHCS 118 (347)
T ss_dssp CCCCC
T ss_pred CccCC
Confidence 98753
No 266
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=6.5e-07 Score=92.51 Aligned_cols=148 Identities=7% Similarity=-0.051 Sum_probs=118.5
Q ss_pred CCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005381 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA 135 (699)
Q Consensus 56 P~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~ 135 (699)
|+...+|..++.++...++ +++++..+++++..+|.+..+|..++.++... +.++++++.+++++++
T Consensus 1 p~~a~~~~~~g~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~ 67 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRK------------YPEAAACYGRAITRNPLVAVYYTNRALCYLKM-QQPEQALADCRRALEL 67 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTS
T ss_pred ChhHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHh
Confidence 6778899999998888765 99999999999999999999999999999987 6999999999999999
Q ss_pred CCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHH
Q 005381 136 DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (699)
Q Consensus 136 dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~ 215 (699)
+|.+..+|..++.++..+|.+ +++++++.++++.+|.+..++....+..... .+..........
T Consensus 68 ~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 131 (281)
T 2c2l_A 68 DGQSVKAHFFLGQCQLEMESY-DEAIANLQRAYSLAKEQRLNFGDDIPSALRI---------------AKKKRWNSIEER 131 (281)
T ss_dssp CTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---------------HHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCccchhhHHHHHHHHHHH---------------HHHHHHHHHHHH
Confidence 999999999999999999998 7899999999999997743221111111111 122222233445
Q ss_pred hCCCCchhHHHHHHHHc
Q 005381 216 TDPDDQSGWFYHLWLLD 232 (699)
Q Consensus 216 ~dP~d~SaW~Y~~~Ll~ 232 (699)
..|.+...+.|+.-++.
T Consensus 132 ~~~~~~~i~~~l~~l~~ 148 (281)
T 2c2l_A 132 RIHQESELHSYLTRLIA 148 (281)
T ss_dssp CCCCCCHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 78889999888887763
No 267
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.56 E-value=3e-07 Score=83.09 Aligned_cols=109 Identities=13% Similarity=0.062 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHH
Q 005381 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLL 185 (699)
Q Consensus 106 ~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll 185 (699)
.+|...|.++.+. +.+++++++++++++++|.+..+|..++.+...++.+ ++.++++.++|+++|.+..+|..++.++
T Consensus 9 ~a~~~lG~~~~~~-~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQ-KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKF-AECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhH-HHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4677778888876 6999999999999999999999999999999999998 7899999999999998877666655555
Q ss_pred HHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCc
Q 005381 186 SNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (699)
Q Consensus 186 ~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~ 221 (699)
..++.. ....+.++++++++.+++..+|+..
T Consensus 87 ~~lg~~-----~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 87 SRAGNA-----FQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp HHHHHH-----HHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHHH-----HHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 554431 1122348999999999999998643
No 268
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.55 E-value=7.9e-07 Score=90.74 Aligned_cols=177 Identities=12% Similarity=0.095 Sum_probs=141.4
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHh
Q 005381 29 SQFLHNHHNHIYSKEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100 (699)
Q Consensus 29 ~~~~~~~~~~~~~~eaL~~~~~~L~~--------nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~ 100 (699)
.........|.+ ++|+.++.+++.+ +|....+|...+.+....++ +++++..+++++..
T Consensus 32 ~l~~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 32 NLVIQYASQGRY-EVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK------------YKDAANLLNDALAI 98 (311)
T ss_dssp HHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHH
Confidence 333344566777 7999999999995 78888999999999888765 88899999998876
Q ss_pred --------CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC--------CCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 101 --------NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKAD--------SRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 101 --------nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~d--------prN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
+|....+|...+.++... +.++++++++++++++. |....+|...+.+....+.+ ++.++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~ 176 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY-EEVEYYY 176 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH-HHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH-HHHHHHH
Confidence 577788999999999877 69999999999999874 66778899999999999988 7899999
Q ss_pred HHHHHh--------ccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHh---------CCCCchhHHHH
Q 005381 165 EDMICN--------NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFT---------DPDDQSGWFYH 227 (699)
Q Consensus 165 ~~~I~~--------n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~---------dP~d~SaW~Y~ 227 (699)
.++++. +|....+|...+.++...++ ++++++.+.+++.. +|.....|...
T Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 244 (311)
T 3nf1_A 177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK------------FKQAETLYKEILTRAHEREFGSVDDENKPIWMHA 244 (311)
T ss_dssp HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHHHHHHC------CCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Confidence 999998 78888889999988887754 78888888888864 45555566555
Q ss_pred HHHHc
Q 005381 228 LWLLD 232 (699)
Q Consensus 228 ~~Ll~ 232 (699)
..+..
T Consensus 245 ~~~~~ 249 (311)
T 3nf1_A 245 EEREE 249 (311)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 269
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.54 E-value=8.4e-07 Score=90.55 Aligned_cols=158 Identities=10% Similarity=0.055 Sum_probs=131.7
Q ss_pred hcCCCCcHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhC-----
Q 005381 35 HHNHIYSKEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN----- 101 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~--------nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~n----- 101 (699)
...|.+ ++|+..+.+++.+ +|....+|+..+.+....+. +++++..+++++...
T Consensus 80 ~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~a~~~~~~~~~ 146 (311)
T 3nf1_A 80 RDQNKY-KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK------------YKEAEPLCKRALEIREKVLG 146 (311)
T ss_dssp HHTTCH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC------------HHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCH-HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCc------------HHHHHHHHHHHHHHHHHhcC
Confidence 445666 7999999999988 57778888889988888765 889999999999763
Q ss_pred ---CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--------CCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHh
Q 005381 102 ---FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA--------DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICN 170 (699)
Q Consensus 102 ---PKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~--------dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~ 170 (699)
|....+|...+.++... +.+++++++++++++. +|....+|...+.+....|.+ ++.++++.++++.
T Consensus 147 ~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 224 (311)
T 3nf1_A 147 KDHPDVAKQLNNLALLCQNQ-GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF-KQAETLYKEILTR 224 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHH
Confidence 77788899999999877 6999999999999998 788888999999999999998 6788888999874
Q ss_pred -------------------------------------------------ccCchHHHHHHHHHHHHhhhhhccCccchhc
Q 005381 171 -------------------------------------------------NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEK 201 (699)
Q Consensus 171 -------------------------------------------------n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~ 201 (699)
+|.+..+|...+.++...+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------- 293 (311)
T 3nf1_A 225 AHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK----------- 293 (311)
T ss_dssp HHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC-----------
Confidence 45566777777777766644
Q ss_pred hHHHHHHHHHHHHHhCCC
Q 005381 202 VLPDEYEFVHQAIFTDPD 219 (699)
Q Consensus 202 ~~~eeL~~~~~ai~~dP~ 219 (699)
++++++++.+|+.+.|+
T Consensus 294 -~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 294 -FEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -HHHHHHHHHHHHHHHC-
T ss_pred -HHHHHHHHHHHHHHhhc
Confidence 79999999999998876
No 270
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.53 E-value=7.9e-06 Score=82.78 Aligned_cols=165 Identities=9% Similarity=-0.022 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC---
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG--- 118 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~--- 118 (699)
++|+..+.+++..+ +..+|+..+.++..... ....+++++.++++++..+ +..+|...+.++...
T Consensus 59 ~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~--------~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 59 KKAASFYAKACDLN--YSNGCHLLGNLYYSGQG--------VSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS--------SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCC--------cccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCc
Confidence 45566666655554 45555555555544100 0122556666666666553 555666666555541
Q ss_pred CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHh----cCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhcc
Q 005381 119 HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAAS----MNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVE 194 (699)
Q Consensus 119 ~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~----l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~ 194 (699)
.+.+++++++++++++.+ +..++.+.+.+... .+.+ ++.+++++++++. .+..++...+.++..-.
T Consensus 127 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~-~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~----- 196 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDL-KKALASYDKACDL--KDSPGCFNAGNMYHHGE----- 196 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTC-----
T ss_pred ccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCC-----
Confidence 135566666666666554 44555555555554 4443 4555566666554 23455555555544300
Q ss_pred CccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 195 GFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 195 ~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
...+.++++++++.+++..+| ..+++.+..++..
T Consensus 197 ---~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 197 ---GATKNFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp ---SSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred ---CCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 001235666666666666654 5556665555544
No 271
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.53 E-value=2.9e-08 Score=111.07 Aligned_cols=128 Identities=8% Similarity=0.008 Sum_probs=106.7
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
..+++++..++++++.+|++..+|..++.++.+. +.+++++++++++++++|.+..+|..++.++..++.+ +++++++
T Consensus 20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~-~eA~~~~ 97 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF-RAALRDY 97 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHH
Confidence 4599999999999999999999999999999987 6999999999999999999999999999999999998 7899999
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHH-----------HHHHhCCCCchhH
Q 005381 165 EDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVH-----------QAIFTDPDDQSGW 224 (699)
Q Consensus 165 ~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~-----------~ai~~dP~d~SaW 224 (699)
+++++.+|.+..+|.+.+.+...+.. +.++++++.+. +++..+|+...++
T Consensus 98 ~~al~~~p~~~~~~~~l~~~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 158 (477)
T 1wao_1 98 ETVVKVKPHDKDAKMKYQECNKIVKQ----------KAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPK 158 (477)
T ss_dssp HHHHHHSTTCTTHHHHHHHHHHHHHH----------HHHCCC------CCSTTTCCTTSSCCCCTTCCSCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHH----------HHHHHHhccccccchhHhhhhhhhccccccccccc
Confidence 99999999999999998877332211 23677778777 7777777655444
No 272
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.53 E-value=6.3e-08 Score=103.17 Aligned_cols=144 Identities=10% Similarity=-0.014 Sum_probs=91.4
Q ss_pred HhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCCh-----------------HHHHHHHHHH
Q 005381 53 ETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY-----------------GAWHHRKWIL 115 (699)
Q Consensus 53 ~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy-----------------~aW~hR~w~L 115 (699)
...++...+|+.++.++...++ +++++..+++++..+|.+. .+|..++.++
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~ 240 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEK------------LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSC------------CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 3445566778888887776654 8999999999999999987 4999999999
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccC
Q 005381 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (699)
Q Consensus 116 ~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~ 195 (699)
.+. +.+++++..|+++++++|.|..+|..++.++..++.+ +++++++.++++.+|.|..+|.....+.....
T Consensus 241 ~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~-~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~------ 312 (338)
T 2if4_A 241 IKL-KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQM-DSARDDFRKAQKYAPDDKAIRRELRALAEQEK------ 312 (338)
T ss_dssp HTT-TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH-HHHHHHHHHTTC--------------------------
T ss_pred HHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH------
Confidence 877 6999999999999999999999999999999999998 68999999999999999999988876644331
Q ss_pred ccchhchHHHHHHHHHHHHHhCCCCc
Q 005381 196 FVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (699)
Q Consensus 196 ~~~~~~~~~eeL~~~~~ai~~dP~d~ 221 (699)
+..+++...+.+++..+|++.
T Consensus 313 -----~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 313 -----ALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------------------
T ss_pred -----HHHHHHHHHHHHhhCCCCCCC
Confidence 235677788899999888765
No 273
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.53 E-value=1.1e-06 Score=87.98 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHh--------CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHh--------CCCCh
Q 005381 42 KEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ--------NFKSY 105 (699)
Q Consensus 42 ~eaL~~~~~~L~~--------nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~--------nPKsy 105 (699)
++|+.++.+++.. +|....+|...+.+....+. +++++..+++++.. +|...
T Consensus 18 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (283)
T 3edt_B 18 GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK------------YKEAAHLLNDALAIREKTLGKDHPAVA 85 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc------------HHHHHHHHHHHHHHHHHHcCCcchHHH
Confidence 4666666666663 37788999999999988865 89999999999976 57778
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHh--------CCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHh-------
Q 005381 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKA--------DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICN------- 170 (699)
Q Consensus 106 ~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~--------dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~------- 170 (699)
.+|...+.++... +.++++++++.+++++ +|....+|...+.+....+.+ +++++++.++++.
T Consensus 86 ~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 86 ATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA-EEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCC
Confidence 8999999999876 6999999999999998 688889999999999999998 7899999999998
Q ss_pred -ccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHh---------CCCCchhHHHHHHHHcC
Q 005381 171 -NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFT---------DPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 171 -n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~---------dP~d~SaW~Y~~~Ll~~ 233 (699)
+|....+|...+.+....+. ++++++.+.+++.. +|.....|.....+...
T Consensus 164 ~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLKQGK------------YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES 224 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc
Confidence 88888999999998887754 78999999999876 66677777776655544
No 274
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=3.5e-07 Score=82.72 Aligned_cols=105 Identities=6% Similarity=-0.028 Sum_probs=89.8
Q ss_pred CCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005381 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA 135 (699)
Q Consensus 56 P~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~ 135 (699)
++...+|...|.++...+. |++++..++++|..+|++..+|..++.++.+. +.++++++.+++++++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~------------~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~-~~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKD------------FEKAHVHYDKAIELDPSNITFYNNKAAVYFEE-KKFAECVQFCEKAVEV 71 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh-hhHHHHHHHHHHHHHh
Confidence 3455677788888877754 99999999999999999999999999999988 6999999999999999
Q ss_pred CCCChh-------hhhHHHHHHHhcCCChHHHHHHHHHHHHhccCc
Q 005381 136 DSRNFH-------AWNYRRFVAASMNRSEEDELKYTEDMICNNFSN 174 (699)
Q Consensus 136 dprN~h-------aW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN 174 (699)
+|.+.. +|...|.+...++.+ +++++++.++++.+|..
T Consensus 72 ~~~~~~~~~~~a~~~~~lg~~~~~~~~~-~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 72 GRETRADYKLIAKAMSRAGNAFQKQNDL-SLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSCCH
T ss_pred CcccchhhHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcCH
Confidence 998864 556667777777887 78999999999988753
No 275
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.52 E-value=1.9e-08 Score=103.64 Aligned_cols=112 Identities=27% Similarity=0.333 Sum_probs=79.5
Q ss_pred CCCcccCE--EEccCCCCCCCcC-----CccccccceeecccCCCCCCCCC-ccccccccccccccccccCCCCCccccc
Q 005381 552 DKLLWVQM--LDLSHNELRSIEG-----LEALQLLSCLNLSNNILGSFTAL-EPIRQLKSLRALNISYNEIGAHSIDTTK 623 (699)
Q Consensus 552 ~~L~~L~~--LdLS~N~L~~l~~-----l~~L~~L~~L~Ls~N~l~~l~~~-~~l~~l~~L~~L~Ls~N~I~~lp~~~~~ 623 (699)
...+.|.. ++++.|....++. ...+++|+.|+|++|+|+++... ..+..+++|+.|+|++|+|+.+. ..
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l- 214 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER--EL- 214 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG--GG-
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch--hh-
Confidence 34444554 6677776655443 35678889999999998887321 33457889999999999998762 11
Q ss_pred ccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCCCccEEEecCCCCC-----CccchHHHhhcCCccccccCccC
Q 005381 624 YLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGLNLTQFDIVGNAIV-----NEKFKSFLIKVLPGLKWLDGEQL 698 (699)
Q Consensus 624 ~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L~L~~LdLs~N~l~-----~~~~~~~~~~~l~~L~~LD~~~i 698 (699)
..+..++|+.|+|++|++. .+.++..++..+|+|+.|||.+|
T Consensus 215 ---------------------------------~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 215 ---------------------------------DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL 261 (267)
T ss_dssp ---------------------------------GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred ---------------------------------hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCC
Confidence 1222236999999999992 23677788899999999999988
Q ss_pred C
Q 005381 699 H 699 (699)
Q Consensus 699 ~ 699 (699)
+
T Consensus 262 ~ 262 (267)
T 3rw6_A 262 P 262 (267)
T ss_dssp C
T ss_pred C
Confidence 5
No 276
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.51 E-value=7.6e-07 Score=95.52 Aligned_cols=183 Identities=7% Similarity=-0.137 Sum_probs=147.5
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCch----HHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHh
Q 005381 25 RVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELY----TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100 (699)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~y----taWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~ 100 (699)
..+..........|.+ ++|+..+.+++..+|++. .+|...+.+....+. +++++..+++++..
T Consensus 49 ~~l~~~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~ 115 (411)
T 4a1s_A 49 LELALEGERLCNAGDC-RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD------------YNKAMQYHKHDLTL 115 (411)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcH-HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHH
Confidence 3444444555677887 799999999999999987 588888988888765 89999999999987
Q ss_pred ------CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh------CCCChhhhhHHHHHHHhcCC-------------
Q 005381 101 ------NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA------DSRNFHAWNYRRFVAASMNR------------- 155 (699)
Q Consensus 101 ------nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~------dprN~haW~yR~~vl~~l~~------------- 155 (699)
+|....+|...+.++... +.++++++++++++++ ++....+|...+.+....+.
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 194 (411)
T 4a1s_A 116 AKSMNDRLGEAKSSGNLGNTLKVM-GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDD 194 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHH
T ss_pred HHHccCchHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhh
Confidence 688889999999999887 6999999999999998 67777899999999998888
Q ss_pred ----ChHHHHHHHHHHHHhc------cCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCch---
Q 005381 156 ----SEEDELKYTEDMICNN------FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS--- 222 (699)
Q Consensus 156 ----~~e~EL~~~~~~I~~n------~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~S--- 222 (699)
+ ++.++++.++++.. +....+|...+.++...+. ++++++++.+++...|....
T Consensus 195 a~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 195 VKEAL-TRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD------------FQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hhHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHHHhcCCcHH
Confidence 6 67888888888763 3334577778777776644 79999999999998886555
Q ss_pred ---hHHHHHHHHcCc
Q 005381 223 ---GWFYHLWLLDQT 234 (699)
Q Consensus 223 ---aW~Y~~~Ll~~~ 234 (699)
+|+.+..++...
T Consensus 262 ~~~~~~~la~~~~~~ 276 (411)
T 4a1s_A 262 ERRANSNLGNSHIFL 276 (411)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHC
Confidence 666666666543
No 277
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.47 E-value=2.1e-06 Score=85.92 Aligned_cols=124 Identities=12% Similarity=0.083 Sum_probs=108.2
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHh---
Q 005381 32 LHNHHNHIYSKEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ--- 100 (699)
Q Consensus 32 ~~~~~~~~~~~eaL~~~~~~L~~--------nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~--- 100 (699)
......|.+ ++|+..+.+++.+ +|....+|+..+.++...++ +++++..+++++..
T Consensus 51 ~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 51 LVYRDQNKY-KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK------------YKEAEPLCKRALEIREK 117 (283)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHcccH-HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc------------HHHHHHHHHHHHHHHHH
Confidence 334566777 7999999999988 47778889999999888765 88999999999987
Q ss_pred -----CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--------CCCChhhhhHHHHHHHhcCCChHHHHHHHHHH
Q 005381 101 -----NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA--------DSRNFHAWNYRRFVAASMNRSEEDELKYTEDM 167 (699)
Q Consensus 101 -----nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~--------dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~ 167 (699)
+|....+|...+.++... +.++++++++++++++ +|....+|...+.+....|.+ +++++++.++
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~ 195 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQ-GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY-QDAETLYKEI 195 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Confidence 688899999999999877 6999999999999999 888889999999999999998 6889999999
Q ss_pred HHh
Q 005381 168 ICN 170 (699)
Q Consensus 168 I~~ 170 (699)
++.
T Consensus 196 l~~ 198 (283)
T 3edt_B 196 LTR 198 (283)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
No 278
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.45 E-value=6e-07 Score=96.97 Aligned_cols=117 Identities=14% Similarity=-0.028 Sum_probs=83.2
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHH----------------hCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHH
Q 005381 26 VLQSQFLHNHHNHIYSKEAVELSTKLLE----------------TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDE 89 (699)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eaL~~~~~~L~----------------~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~e 89 (699)
.+..........++| ++|++.+.++|. .+|....+|+.++.++..+++ +++
T Consensus 225 ~~~~~g~~~~~~g~~-~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~------------~~~ 291 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNW-EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD------------WQG 291 (370)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC------------HHH
T ss_pred HHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC------------HHH
Confidence 344445555677888 899999999999 666667777777777766644 677
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCC
Q 005381 90 ELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS 156 (699)
Q Consensus 90 EL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~ 156 (699)
++..++++|..+|++..+|+.++.++... +.++++++.++++++++|.|..+|...+.+...++.+
T Consensus 292 A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 292 AVDSCLEALEIDPSNTKALYRRAQGWQGL-KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777666 4677777777777777777777777666666555443
No 279
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.44 E-value=5.1e-06 Score=72.03 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=102.0
Q ss_pred CCCC-hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHH
Q 005381 101 NFKS-YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWH 179 (699)
Q Consensus 101 nPKs-y~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~ 179 (699)
+|.. ..+|...+.+.... +.+++++++++++++.+|.+..+|...+.+....+.+ ++.++++.++++.+|.+..+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~ 81 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPNNAEAWY 81 (125)
T ss_dssp ---CHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHH
T ss_pred CccccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCccHHHHH
Confidence 5555 77898888888876 6999999999999999999999999999999999988 7899999999999999999999
Q ss_pred HHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005381 180 NRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 180 ~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll 231 (699)
..+.++...+. ++++++.+.+++..+|++..++..+..+.
T Consensus 82 ~la~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 82 NLGNAYYKQGD------------YDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 99988877644 79999999999999999999988766554
No 280
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.43 E-value=2e-05 Score=79.77 Aligned_cols=159 Identities=11% Similarity=-0.037 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHh----hhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQH----KLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK 117 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~----l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~ 117 (699)
++|+.++.+++. |++..+|+..+.++.. .+ .+++++.++++++..+ +..+|+..+.++..
T Consensus 23 ~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~------------~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 23 TQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEK------------NLKKAASFYAKACDLN--YSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCC------------CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCC------------CHHHHHHHHHHHHHCC--CHHHHHHHHHHHhC
Confidence 566666666655 5555666666655554 32 2556666666666554 55666666666655
Q ss_pred ----CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHh----cCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Q 005381 118 ----GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAAS----MNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLL 189 (699)
Q Consensus 118 ----~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~----l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~ 189 (699)
. ..+++++++++++++.+ +..+|...+.+... .+.+ ++.++++.++++.+ +..++.+.+.++..-.
T Consensus 87 g~~~~-~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~-~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 87 GQGVS-QNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDF-KKAVEYFTKACDLN--DGDGCTILGSLYDAGR 160 (273)
T ss_dssp TSSSC-CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCH-HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred CCCcc-cCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCH-HHHHHHHHHHHhcC--cHHHHHHHHHHHHcCC
Confidence 3 35566666666666553 55566666666555 4444 45566666666554 4455555555554410
Q ss_pred hhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHc
Q 005381 190 KRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (699)
Q Consensus 190 ~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~ 232 (699)
.. .+.++++++++.+++.. ++..+++.+..++.
T Consensus 161 ~~--------~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 161 GT--------PKDLKKALASYDKACDL--KDSPGCFNAGNMYH 193 (273)
T ss_dssp SS--------CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred CC--------CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 00 01145566666666554 34455555544443
No 281
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.42 E-value=1.7e-06 Score=91.85 Aligned_cols=176 Identities=9% Similarity=-0.080 Sum_probs=140.7
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCch----HHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHh------
Q 005381 31 FLHNHHNHIYSKEAVELSTKLLETNPELY----TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ------ 100 (699)
Q Consensus 31 ~~~~~~~~~~~~eaL~~~~~~L~~nP~~y----taWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~------ 100 (699)
.......|.+ ++|+.++.+++..+|++. .+|...+.+....+. +++++..+++++..
T Consensus 16 g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 16 GERLCKSGDC-RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD------------YAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccH-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcC------------HHHHHHHHHHHHHHHHhccc
Confidence 3444567777 799999999999999984 678888888887754 88999999998876
Q ss_pred CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh------hhhhHHHHHHHhcCC-------------------
Q 005381 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF------HAWNYRRFVAASMNR------------------- 155 (699)
Q Consensus 101 nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~------haW~yR~~vl~~l~~------------------- 155 (699)
.|....+|...+.++... +.+++++.++++++++.++.. .+|...+.+....|.
T Consensus 83 ~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 456678899999999877 699999999999999887763 488889999888888
Q ss_pred -ChHHHHHHHHHHHHh------ccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCch------
Q 005381 156 -SEEDELKYTEDMICN------NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS------ 222 (699)
Q Consensus 156 -~~e~EL~~~~~~I~~------n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~S------ 222 (699)
+ ++.++++.++++. .+....+|...+.+....+. ++++++++.+++...|....
T Consensus 162 ~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~ 228 (406)
T 3sf4_A 162 AL-QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN------------FRDAVIAHEQRLLIAKEFGDKAAERR 228 (406)
T ss_dssp HH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB------------HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 5 6788888888886 44455678888887776644 79999999999988776655
Q ss_pred hHHHHHHHHcC
Q 005381 223 GWFYHLWLLDQ 233 (699)
Q Consensus 223 aW~Y~~~Ll~~ 233 (699)
+|+.+..++..
T Consensus 229 ~~~~la~~~~~ 239 (406)
T 3sf4_A 229 AYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666544
No 282
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.41 E-value=2.7e-05 Score=80.29 Aligned_cols=167 Identities=15% Similarity=0.073 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchH-----HHH-HHHHHHHhhhccCCCCchhhhhhHHHHHHHHHH
Q 005381 23 KLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYT-----AWN-YRKLAVQHKLTENDSDPDSLKSILDEELRVVES 96 (699)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~yt-----aWn-~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~ 96 (699)
....+..........+.| ++|++.+.+++...|.... .|. +.+.+.... ..+++++..+++
T Consensus 74 ~~~~l~~~~~~~~~~~~y-~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~A~~~~~~ 140 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRY-KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK------------VDYEYCILELKK 140 (293)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTS------------SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhH-HHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcC------------CCHHHHHHHHHH
Confidence 334555566666778888 8999999999999887542 222 233333333 248999999999
Q ss_pred HHHhCCCC------hHHHHHHHHHHHhCCCChHHHHHHHHHHH---HhCCCCh----hhhhHHHHHHHhcCCChHHHHHH
Q 005381 97 ALRQNFKS------YGAWHHRKWILSKGHSSIDNELRLLDKFQ---KADSRNF----HAWNYRRFVAASMNRSEEDELKY 163 (699)
Q Consensus 97 ~L~~nPKs------y~aW~hR~w~L~~~~~~~~~EL~~~~k~L---~~dprN~----haW~yR~~vl~~l~~~~e~EL~~ 163 (699)
++...++. ..+|+..+.+.... +.++++++++++++ +..+.+. .++...+.+....+.+ ++++++
T Consensus 141 al~~~~~~~~~~~~~~~~~~lg~~y~~~-~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y-~~Al~~ 218 (293)
T 2qfc_A 141 LLNQQLTGIDVYQNLYIENAIANIYAEN-GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY-EESLYQ 218 (293)
T ss_dssp HHTTCCCSSCTTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH-HHHHHH
Confidence 99877666 56888999999887 69999999999999 5555543 6899999999999999 789999
Q ss_pred HHHHHHhccCc------hHHHHHHHHHHHHhhhhhccCccchhchHHHH-HHHHHHHHHh
Q 005381 164 TEDMICNNFSN------YSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDE-YEFVHQAIFT 216 (699)
Q Consensus 164 ~~~~I~~n~sN------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~ee-L~~~~~ai~~ 216 (699)
++++++..+.. ..++.+.+.+...++. ++++ .+++++|+.+
T Consensus 219 ~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~------------~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEY------------EEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHHHH
Confidence 99999876431 5678888888877754 5667 5667777644
No 283
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.39 E-value=5e-06 Score=88.96 Aligned_cols=173 Identities=11% Similarity=-0.036 Sum_probs=138.1
Q ss_pred HhcCCCCcHHHHHHHHHHHHh---CC---CchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC---
Q 005381 34 NHHNHIYSKEAVELSTKLLET---NP---ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS--- 104 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~---nP---~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs--- 104 (699)
....|.+ ++|+..+.+++.+ .| ....+|+..+.+...++. +++++..+++++...++.
T Consensus 113 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~------------~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 113 ELDQREY-LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ------------TYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHTTCH-HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHhcCH-HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHhCccc
Confidence 4567777 8999999999998 33 356888889998888865 899999999999875554
Q ss_pred ----hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh------hhhhHHHHHHHhcCCChHHHHHHHHHHHH-----
Q 005381 105 ----YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF------HAWNYRRFVAASMNRSEEDELKYTEDMIC----- 169 (699)
Q Consensus 105 ----y~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~------haW~yR~~vl~~l~~~~e~EL~~~~~~I~----- 169 (699)
..++...+.+.... +.++++++.+++++++.++.- .++...+++....|.+ +++++++.++++
T Consensus 180 ~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~-~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDL-KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY-EDAIPYFKRAIAVFEES 257 (383)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHhh
Confidence 34777888888877 699999999999999876654 4899999999999998 789999999999
Q ss_pred hc-cCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhC-----CCCchhHHHHHHHHcC
Q 005381 170 NN-FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTD-----PDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 170 ~n-~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~d-----P~d~SaW~Y~~~Ll~~ 233 (699)
.+ |....++...+.+...++. ++++++++.+|+... |.....+..+..+...
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~ 315 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGK------------IDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS 315 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS
T ss_pred ccchhHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 56 8888899999998887754 789999999999874 4444444444444433
No 284
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=6.6e-07 Score=92.67 Aligned_cols=185 Identities=8% Similarity=-0.013 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHH-------HHHHHhhhccCC----------CCc----
Q 005381 22 EKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYR-------KLAVQHKLTEND----------SDP---- 80 (699)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R-------~~~l~~l~~~~~----------~~~---- 80 (699)
+.++..++...-. ..+.+ .+|++.+.+++.++|+...+|..| +.+|..+.+..+ ..|
T Consensus 5 ~~~~~~~~~~~~~-~~~d~-~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~ 82 (282)
T 4f3v_A 5 DRLASLFESAVSM-LPMSE-ARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN 82 (282)
T ss_dssp HHHHHHHHHHHHH-TTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC
T ss_pred HHHHHHHHHHhcc-cCCCH-HHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence 4556666555543 34555 799999999999999999999999 788877765311 011
Q ss_pred ---h--------------------------hhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 81 ---D--------------------------SLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDK 131 (699)
Q Consensus 81 ---~--------------------------~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k 131 (699)
. .....|+++.+.++.++..+|... +++-++-+..+. .+|++++.++++
T Consensus 83 a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~-~r~~dA~~~l~~ 160 (282)
T 4f3v_A 83 ARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAA-ERWTDVIDQVKS 160 (282)
T ss_dssp CEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHT-TCHHHHHHHHTT
T ss_pred hhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 0 012568999999999999999888 888899888877 699999999998
Q ss_pred HHHhCCCC---hhhhhHHHHHHHhcCCChHHHHHHHHHHHHhc--cC-chHHHHHHHHHHHHhhhhhccCccchhchHHH
Q 005381 132 FQKADSRN---FHAWNYRRFVAASMNRSEEDELKYTEDMICNN--FS-NYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPD 205 (699)
Q Consensus 132 ~L~~dprN---~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n--~s-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~e 205 (699)
+.... .+ ..++.+.+.++..+|.+ ++.++++++++... |. .-.++.+++.++..+++ .++
T Consensus 161 a~~~~-d~~~~~~a~~~LG~al~~LG~~-~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr------------~de 226 (282)
T 4f3v_A 161 AGKWP-DKFLAGAAGVAHGVAAANLALF-TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN------------ESA 226 (282)
T ss_dssp GGGCS-CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC------------HHH
T ss_pred hhccC-CcccHHHHHHHHHHHHHHCCCH-HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC------------HHH
Confidence 76643 33 24899999999999998 78999999998654 66 55699999999999976 699
Q ss_pred HHHHHHHHHHhCCCCchhHH
Q 005381 206 EYEFVHQAIFTDPDDQSGWF 225 (699)
Q Consensus 206 eL~~~~~ai~~dP~d~SaW~ 225 (699)
+.+.+++++..+|+ ..+|.
T Consensus 227 A~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 227 AVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHhcCCc-HHHHH
Confidence 99999999999999 76664
No 285
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.36 E-value=6.3e-07 Score=79.24 Aligned_cols=100 Identities=12% Similarity=0.054 Sum_probs=69.9
Q ss_pred CCCcHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005381 38 HIYSKEAVELSTKLLET---NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (699)
Q Consensus 38 ~~~~~eaL~~~~~~L~~---nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~ 114 (699)
|.+ ++|+..+.++|.+ +|++..+|...+.++...++ +++++..+++++..+|++..+|...+.+
T Consensus 4 g~~-~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 70 (117)
T 3k9i_A 4 GLE-AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE------------YRKAEAVLANGVKQFPNHQALRVFYAMV 70 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcH-HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344 4677777777777 47777777777777776654 7777777777777777777777777777
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHH
Q 005381 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAA 151 (699)
Q Consensus 115 L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~ 151 (699)
+.+. +.++++++.++++++.+|.+.....|++-+..
T Consensus 71 ~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~ 106 (117)
T 3k9i_A 71 LYNL-GRYEQGVELLLKIIAETSDDETIQSYKQAILF 106 (117)
T ss_dssp HHHH-TCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 7766 47777777777777777777766666554433
No 286
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.36 E-value=4.3e-07 Score=80.30 Aligned_cols=98 Identities=10% Similarity=-0.001 Sum_probs=56.4
Q ss_pred ChHHHHHHHHHHHHh---CCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCcc
Q 005381 121 SIDNELRLLDKFQKA---DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFV 197 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~---dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~ 197 (699)
.+++++.++++++++ +|.+..+|...+.+....+.+ ++.++++.++++.+|.+..+|.+.+.++..+++
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------- 76 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEY-RKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR------- 76 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------
T ss_pred cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-------
Confidence 345555566666665 455556666666665555555 455555566666666666666666655555533
Q ss_pred chhchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005381 198 SKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 198 ~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll 231 (699)
++++++.+.+++..+|++.....|.+-+.
T Consensus 77 -----~~~A~~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 77 -----YEQGVELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp -----HHHHHHHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred -----HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 55666666666666666666666555544
No 287
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.34 E-value=1.3e-05 Score=70.77 Aligned_cols=104 Identities=11% Similarity=-0.012 Sum_probs=76.2
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCch---HHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC---hHH
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELY---TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS---YGA 107 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~y---taWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs---y~a 107 (699)
....|.+ ++|+..+.+++..+|++. .+|...+.+....++ +++++..+++++..+|++ ..+
T Consensus 12 ~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~------------~~~A~~~~~~~~~~~p~~~~~~~~ 78 (129)
T 2xev_A 12 ALKNGKY-DDASQLFLSFLELYPNGVYTPNALYWLGESYYATRN------------FQLAEAQFRDLVSRYPTHDKAAGG 78 (129)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred HHHhCCH-HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhcc------------HHHHHHHHHHHHHHCCCCcccHHH
Confidence 3455666 677888888888888777 677777777776654 777888888888888877 777
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHH
Q 005381 108 WHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAA 151 (699)
Q Consensus 108 W~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~ 151 (699)
|...+.++... +.+++++..++++++.+|.+..++.-+..+-.
T Consensus 79 ~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 79 LLKLGLSQYGE-GKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 77777777766 57778888888888888877777666555443
No 288
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.34 E-value=3.9e-06 Score=85.87 Aligned_cols=176 Identities=9% Similarity=-0.094 Sum_probs=135.5
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHh------
Q 005381 31 FLHNHHNHIYSKEAVELSTKLLETNPEL----YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ------ 100 (699)
Q Consensus 31 ~~~~~~~~~~~~eaL~~~~~~L~~nP~~----ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~------ 100 (699)
.......|.+ ++|+..+.+++..+|++ ..+|...+.+....+. +++++..+++++..
T Consensus 12 g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~ 78 (338)
T 3ro2_A 12 GERLCKSGDC-RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD------------YAKALEYHHHDLTLARTIGD 78 (338)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhccH-HHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHhhcccc
Confidence 3445567777 79999999999999998 4677788888877754 88889999888876
Q ss_pred CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChh------hhhHHHHHHHhcCC-------------------
Q 005381 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFH------AWNYRRFVAASMNR------------------- 155 (699)
Q Consensus 101 nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~h------aW~yR~~vl~~l~~------------------- 155 (699)
.|....+|...+.+.... +.++++++.+++++++.++... +|...+.+....+.
T Consensus 79 ~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 566678888899988877 6999999999999998776544 88888888888887
Q ss_pred -ChHHHHHHHHHHHHh------ccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCch------
Q 005381 156 -SEEDELKYTEDMICN------NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS------ 222 (699)
Q Consensus 156 -~~e~EL~~~~~~I~~------n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~S------ 222 (699)
+ ++.++++.++++. .+....+|...+.+....+. ++++++.+.+++...|....
T Consensus 158 ~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~~~ 224 (338)
T 3ro2_A 158 AL-QAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN------------FRDAVIAHEQRLLIAKEFGDKAAERR 224 (338)
T ss_dssp HH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 5 6788888888775 33344567777777666543 78899999999887765444
Q ss_pred hHHHHHHHHcC
Q 005381 223 GWFYHLWLLDQ 233 (699)
Q Consensus 223 aW~Y~~~Ll~~ 233 (699)
+|..+..++..
T Consensus 225 ~~~~l~~~~~~ 235 (338)
T 3ro2_A 225 AYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56665555544
No 289
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.33 E-value=3.8e-06 Score=90.67 Aligned_cols=118 Identities=8% Similarity=-0.110 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHH----------------hCCCChHHHHHHHHHHHhCCCCh
Q 005381 59 YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR----------------QNFKSYGAWHHRKWILSKGHSSI 122 (699)
Q Consensus 59 ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~----------------~nPKsy~aW~hR~w~L~~~~~~~ 122 (699)
..+|..++..+...++ +++++..++++++ .+|.+..+|..+++++.+. +.+
T Consensus 223 a~~~~~~g~~~~~~g~------------~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~ 289 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQN------------WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM-SDW 289 (370)
T ss_dssp HHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHHHHHHHHHhcC------------HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc-cCH
Confidence 4567778877777654 8999999999998 8899999999999999987 699
Q ss_pred HHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhh
Q 005381 123 DNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (699)
Q Consensus 123 ~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~ 190 (699)
++++++|+++++++|.+..+|..++.++..++.+ +++++++.++++.+|.|..+|.....+...+..
T Consensus 290 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY-DQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 789999999999999999999999888777644
No 290
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.33 E-value=4.3e-06 Score=87.14 Aligned_cols=163 Identities=7% Similarity=-0.027 Sum_probs=124.3
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC---
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPEL------YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS--- 104 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~------ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs--- 104 (699)
.+..+.+ ++|++.+.+++.+.++. ..+++..+.++..+++ +++++..+++++...++.
T Consensus 46 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~------------~~~A~~~~~~Al~l~~~~g~~ 112 (307)
T 2ifu_A 46 FKNAKQL-EQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR------------MPEAVQYIEKASVMYVENGTP 112 (307)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------GGGGHHHHHHHHHHHHTTTCH
T ss_pred HHHcCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------------HHHHHHHHHHHHHHHHHcCCH
Confidence 3455666 79999999999987643 4567777777777654 788888888888774432
Q ss_pred ---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC------hhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCch
Q 005381 105 ---YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN------FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (699)
Q Consensus 105 ---y~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN------~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~ 175 (699)
..+|...+.++.. +.++++++++++++++.+.. ..++...+.+...++.+ ++++++++++++..+.+.
T Consensus 113 ~~~a~~~~~lg~~~~~--g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 113 DTAAMALDRAGKLMEP--LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKF-DEAAASLQKEKSMYKEME 189 (307)
T ss_dssp HHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHcC
Confidence 3577777888865 69999999999999988765 46788889999999999 789999999999877654
Q ss_pred H------HHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHH
Q 005381 176 S------AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (699)
Q Consensus 176 S------AW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~ 225 (699)
. +|..++.+...++ .+++++.++.+++ .+|.......
T Consensus 190 ~~~~~~~~~~~~g~~~~~~g------------~~~~A~~~~~~al-~~p~~~~~~e 232 (307)
T 2ifu_A 190 NYPTCYKKCIAQVLVQLHRA------------DYVAAQKCVRESY-SIPGFSGSED 232 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHT-TSTTSTTSHH
T ss_pred ChhHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHh-CCCCCCCCHH
Confidence 3 3444444433332 3799999999999 9998776543
No 291
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.32 E-value=6.8e-06 Score=72.04 Aligned_cols=118 Identities=8% Similarity=-0.020 Sum_probs=101.9
Q ss_pred CCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005381 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA 135 (699)
Q Consensus 56 P~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~ 135 (699)
|+...+|...+.+....+. +++++..+++++..+|.+..+|...+.++... +.+++++.+++++++.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKD------------FDTALKHYDKAKELDPTNMTYITNQAAVYFEK-GDYNKCRELCEKAIEV 67 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcC------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhh
Confidence 3456678888887777654 89999999999999999999999999999876 5999999999999999
Q ss_pred CCCC-------hhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Q 005381 136 DSRN-------FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNL 188 (699)
Q Consensus 136 dprN-------~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l 188 (699)
+|.+ ..+|...+.+....+.+ ++.++++.++++.+| +..++.....+...+
T Consensus 68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 68 GRENREDYRQIAKAYARIGNSYFKEEKY-KDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 9988 88999999999999988 789999999999998 677777776665554
No 292
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.28 E-value=1.4e-05 Score=70.77 Aligned_cols=109 Identities=6% Similarity=-0.114 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 005381 62 WNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY---GAWHHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (699)
Q Consensus 62 Wn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy---~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dpr 138 (699)
+..++.+....+. +++++..++.++..+|.+. .+|...+.+.... +.+++++..++++++.+|.
T Consensus 5 ~~~~a~~~~~~~~------------~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~~~~~~p~ 71 (129)
T 2xev_A 5 AYNVAFDALKNGK------------YDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT-RNFQLAEAQFRDLVSRYPT 71 (129)
T ss_dssp HHHHHHHHHHTTC------------HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCC------------HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHCCC
Confidence 4556666665543 9999999999999999999 7999999999887 6999999999999999999
Q ss_pred C---hhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHH
Q 005381 139 N---FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (699)
Q Consensus 139 N---~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~l 184 (699)
+ ..+|...+.+....|.+ ++.+++++++++.+|.+..++.-+..+
T Consensus 72 ~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 72 HDKAAGGLLKLGLSQYGEGKN-TEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp STTHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 9 88899999999999998 789999999999999998887666554
No 293
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.28 E-value=1.6e-05 Score=82.02 Aligned_cols=165 Identities=12% Similarity=-0.002 Sum_probs=122.7
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchH----HHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCC
Q 005381 28 QSQFLHNHHNHIYSKEAVELSTKLLETNPELYT----AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK 103 (699)
Q Consensus 28 ~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~yt----aWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPK 103 (699)
...+......++| ++|+.++.+++...+.... +..+.......... ..+++++..+++++...++
T Consensus 79 ~~~i~~~~~~~~y-~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~Ai~~~~~al~~~~~ 147 (293)
T 3u3w_A 79 KDQVIMLCKQKRY-KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK----------VDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTS----------SCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhhH-HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcc----------cCHHHHHHHHHHHHHHhcc
Confidence 3344455667888 8999999999998877655 32333222222221 3489999999999997655
Q ss_pred ChH------HHHHHHHHHHhCCCChHHHHHHHHHHHHh-------CCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHh
Q 005381 104 SYG------AWHHRKWILSKGHSSIDNELRLLDKFQKA-------DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICN 170 (699)
Q Consensus 104 sy~------aW~hR~w~L~~~~~~~~~EL~~~~k~L~~-------dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~ 170 (699)
... +++.-+.+.... +.+++++++++++++. .+....++.+.+.+...++.+ ++++++++++++.
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y-~~A~~~~~~al~~ 225 (293)
T 3u3w_A 148 GIDVYQNLYIENAIANIYAEN-GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY-EESLYQVNKAIEI 225 (293)
T ss_dssp CSCTTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHH
Confidence 443 677888888777 6999999999999952 223345889999999999999 7899999999998
Q ss_pred ccCc------hHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHh
Q 005381 171 NFSN------YSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFT 216 (699)
Q Consensus 171 n~sN------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~ 216 (699)
.+.. ..+|.+++.+...++. .++++++++++|+.+
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~-----------~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEY-----------EEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCC-----------cHHHHHHHHHHHHHH
Confidence 7554 5688999988887753 258889999988864
No 294
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.25 E-value=3.7e-08 Score=106.65 Aligned_cols=132 Identities=17% Similarity=0.173 Sum_probs=64.3
Q ss_pred EEccCCCCCccc---CCCCCcccCEEEccCCCCCCCcC--C-----ccccccceeecccCCCCCCC---CCccccccccc
Q 005381 538 LQLKNLSLSRLG---SFDKLLWVQMLDLSHNELRSIEG--L-----EALQLLSCLNLSNNILGSFT---ALEPIRQLKSL 604 (699)
Q Consensus 538 L~Ls~n~l~~l~---~l~~L~~L~~LdLS~N~L~~l~~--l-----~~L~~L~~L~Ls~N~l~~l~---~~~~l~~l~~L 604 (699)
|+|++|.++..+ ....+.+|+.|+|++|.|+.... + ...++|+.|+|++|.|+... ....+..+++|
T Consensus 106 L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L 185 (372)
T 3un9_A 106 VNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSV 185 (372)
T ss_dssp EECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSC
T ss_pred EEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCc
Confidence 666666665322 22234556666666666644322 1 23455666666666664311 01122445566
Q ss_pred cccccccccCCCCCcc-cccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCC
Q 005381 605 RALNISYNEIGAHSID-TTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIV 675 (699)
Q Consensus 605 ~~L~Ls~N~I~~lp~~-~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~ 675 (699)
+.|+|++|.|+..... ....+...+-+..+++++|.+... ....+...+... +|+.|+|++|+|.
T Consensus 186 ~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~------g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT------AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH------HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH------HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 6666666666543210 011122222233335555544211 111223345555 7889999999884
No 295
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.22 E-value=1.4e-05 Score=70.03 Aligned_cols=116 Identities=14% Similarity=-0.038 Sum_probs=99.3
Q ss_pred CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCc-------h
Q 005381 103 KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN-------Y 175 (699)
Q Consensus 103 Ksy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN-------~ 175 (699)
+...+|...+.+.... +.+++++.+++++++.+|.+..+|...+.+....+.+ ++.++++.++++.+|.+ .
T Consensus 2 ~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 2 KQALKEKELGNDAYKK-KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDY-NKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccH-HHHHHHHHHHHhhccccchhHHHHH
Confidence 3456788888888776 6999999999999999999999999999999999998 78999999999999987 7
Q ss_pred HHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 176 SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 176 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
.+|...+.++..++. ++++++++.+++..+| +...+.....+...
T Consensus 80 ~~~~~la~~~~~~~~------------~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 80 KAYARIGNSYFKEEK------------YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc------------HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 888888888776644 7999999999999999 67777776665543
No 296
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.17 E-value=4.3e-08 Score=106.13 Aligned_cols=150 Identities=14% Similarity=0.098 Sum_probs=98.8
Q ss_pred EEccCCCCCccc------CCC-CCcccCEEEccCCCCCCCc--C-CccccccceeecccCCCCCCCCCccc-----cccc
Q 005381 538 LQLKNLSLSRLG------SFD-KLLWVQMLDLSHNELRSIE--G-LEALQLLSCLNLSNNILGSFTALEPI-----RQLK 602 (699)
Q Consensus 538 L~Ls~n~l~~l~------~l~-~L~~L~~LdLS~N~L~~l~--~-l~~L~~L~~L~Ls~N~l~~l~~~~~l-----~~l~ 602 (699)
|+|++|.++..+ .+. ...+|+.|+|++|.|+... . ...+.+|+.|+|++|.|+... ...+ ...+
T Consensus 77 L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~-~~~L~~~L~~~~~ 155 (372)
T 3un9_A 77 LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA-CKDLRDLLLHDQC 155 (372)
T ss_dssp EECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHH-HHHHHHHHHSTTC
T ss_pred EEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHH-HHHHHHHHHhcCC
Confidence 999999998543 222 3379999999999996532 2 456788999999999997531 1222 2357
Q ss_pred cccccccccccCCCCCccc-ccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccc-
Q 005381 603 SLRALNISYNEIGAHSIDT-TKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKF- 679 (699)
Q Consensus 603 ~L~~L~Ls~N~I~~lp~~~-~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~- 679 (699)
+|+.|+|++|.|+...... ...+...+-+..+++++|.+... ....+...+... +|+.|+|++|.|.....
T Consensus 156 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~------g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE------GLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHH------HHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcH------HHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 8999999999997643111 12223334445557888876321 122334567777 99999999999943222
Q ss_pred -hHHHhhcCCcccccc
Q 005381 680 -KSFLIKVLPGLKWLD 694 (699)
Q Consensus 680 -~~~~~~~l~~L~~LD 694 (699)
....+...++|+.||
T Consensus 230 ~l~~~L~~~~~L~~L~ 245 (372)
T 3un9_A 230 ALARAAREHPSLELLH 245 (372)
T ss_dssp HHHHHHHHCSSCCEEE
T ss_pred HHHHHHHhCCCCCEEe
Confidence 122344568888776
No 297
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.16 E-value=4.3e-06 Score=89.60 Aligned_cols=171 Identities=9% Similarity=-0.089 Sum_probs=135.3
Q ss_pred cCCCCcHHHHHHHHHHHHh------CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHh------CCC
Q 005381 36 HNHIYSKEAVELSTKLLET------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ------NFK 103 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~------nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~------nPK 103 (699)
..|++ ++|+..+.+++.+ .|....+|...+.++...+. +++++..+++++.. .|.
T Consensus 98 ~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~ 164 (411)
T 4a1s_A 98 YLGDY-NKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGR------------FDEAAICCERHLTLARQLGDRLS 164 (411)
T ss_dssp HHTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HCCCH-HHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHHHhhchHH
Confidence 45666 7999999999998 78888999999999988865 88999999999987 667
Q ss_pred ChHHHHHHHHHHHhCCCC-----------------hHHHHHHHHHHHHhC------CCChhhhhHHHHHHHhcCCChHHH
Q 005381 104 SYGAWHHRKWILSKGHSS-----------------IDNELRLLDKFQKAD------SRNFHAWNYRRFVAASMNRSEEDE 160 (699)
Q Consensus 104 sy~aW~hR~w~L~~~~~~-----------------~~~EL~~~~k~L~~d------prN~haW~yR~~vl~~l~~~~e~E 160 (699)
...+|...+.++... +. ++++++++.+++++. +....+|...+.+....+.+ ++.
T Consensus 165 ~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A 242 (411)
T 4a1s_A 165 EGRALYNLGNVYHAK-GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF-QAA 242 (411)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-HHH
T ss_pred HHHHHHHHHHHHHHc-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh-HHH
Confidence 777899999888866 47 889999999988864 33345888889999999988 689
Q ss_pred HHHHHHHHHhccCchH------HHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC------chhHHHHH
Q 005381 161 LKYTEDMICNNFSNYS------AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD------QSGWFYHL 228 (699)
Q Consensus 161 L~~~~~~I~~n~sN~S------AW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d------~SaW~Y~~ 228 (699)
++++.++++..+.+.. +|.+.+.++...+. ++++++.+++++...|.. ..+|..+.
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 310 (411)
T 4a1s_A 243 IEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ------------FEDAAEHYKRTLALAVELGEREVEAQSCYSLG 310 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998876555 77777777766543 788888888888887754 44555555
Q ss_pred HHHcC
Q 005381 229 WLLDQ 233 (699)
Q Consensus 229 ~Ll~~ 233 (699)
.++..
T Consensus 311 ~~~~~ 315 (411)
T 4a1s_A 311 NTYTL 315 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 298
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.16 E-value=1.2e-05 Score=70.41 Aligned_cols=98 Identities=13% Similarity=0.036 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHH
Q 005381 89 EELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMI 168 (699)
Q Consensus 89 eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I 168 (699)
+++..+++++..+|.+..+|...+.++... +.++++++.++++++.+|.+..+|.+.+.+....|.+ +++++++.+++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEH-EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR-AGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Confidence 567899999999999999999999999887 6999999999999999999999999999999999998 68999999999
Q ss_pred HhccCch--HHHHHHHHHHHHh
Q 005381 169 CNNFSNY--SAWHNRSLLLSNL 188 (699)
Q Consensus 169 ~~n~sN~--SAW~~R~~ll~~l 188 (699)
+.+|.+. .+......++..+
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l 102 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVFLRRL 102 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHHHHh
Confidence 9988654 4444444444444
No 299
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.13 E-value=1e-05 Score=70.83 Aligned_cols=87 Identities=11% Similarity=-0.021 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCh
Q 005381 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSI 122 (699)
Q Consensus 43 eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~ 122 (699)
+|++.+.+++..+|++..+|+..+.++...++ +++++..+++++..+|.+..+|...+.++... +.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~ 69 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQ------------FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ-GDR 69 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc-CCH
Confidence 68899999999999999999999999988865 89999999999999999999999999999887 699
Q ss_pred HHHHHHHHHHHHhCCCChhh
Q 005381 123 DNELRLLDKFQKADSRNFHA 142 (699)
Q Consensus 123 ~~EL~~~~k~L~~dprN~ha 142 (699)
++++..++++++++|.+...
T Consensus 70 ~~A~~~~~~al~~~~~~~~~ 89 (115)
T 2kat_A 70 AGARQAWESGLAAAQSRGDQ 89 (115)
T ss_dssp HHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhccccccH
Confidence 99999999999999865443
No 300
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.12 E-value=6.3e-06 Score=87.44 Aligned_cols=172 Identities=10% Similarity=-0.029 Sum_probs=134.6
Q ss_pred HhcCCCCcHHHHHHHHHHHHh------CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC---
Q 005381 34 NHHNHIYSKEAVELSTKLLET------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS--- 104 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~------nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs--- 104 (699)
....|++ ++|+..+.+++.+ .|....+|...+.+....+. +++++..+++++...|+.
T Consensus 57 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~ 123 (406)
T 3sf4_A 57 YFYLHDY-AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN------------FDEAIVCCQRHLDISRELNDK 123 (406)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCH-HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHhcccc
Confidence 3456676 7999999999888 56667888899998888765 899999999999887765
Q ss_pred ---hHHHHHHHHHHHhCCCC--------------------hHHHHHHHHHHHHh------CCCChhhhhHHHHHHHhcCC
Q 005381 105 ---YGAWHHRKWILSKGHSS--------------------IDNELRLLDKFQKA------DSRNFHAWNYRRFVAASMNR 155 (699)
Q Consensus 105 ---y~aW~hR~w~L~~~~~~--------------------~~~EL~~~~k~L~~------dprN~haW~yR~~vl~~l~~ 155 (699)
..+|...+.+.... +. ++++++.+++++++ .+....+|...+.+....|.
T Consensus 124 ~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 202 (406)
T 3sf4_A 124 VGEARALYNLGNVYHAK-GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN 202 (406)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB
T ss_pred cchHHHHHHHHHHHHHc-CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccC
Confidence 44888888888765 46 89999999999887 44445688888999999998
Q ss_pred ChHHHHHHHHHHHHhccCchH------HHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC------chh
Q 005381 156 SEEDELKYTEDMICNNFSNYS------AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD------QSG 223 (699)
Q Consensus 156 ~~e~EL~~~~~~I~~n~sN~S------AW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d------~Sa 223 (699)
+ ++.++++.++++..+.... +|...+.++...+. ++++++.+.+++...|.. ..+
T Consensus 203 ~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~ 269 (406)
T 3sf4_A 203 F-RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE------------FETASEYYKKTLLLARQLKDRAVEAQS 269 (406)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHHHhCcCchHHHHH
Confidence 8 6899999999998766554 77888877776644 789999999999887765 334
Q ss_pred HHHHHHHHc
Q 005381 224 WFYHLWLLD 232 (699)
Q Consensus 224 W~Y~~~Ll~ 232 (699)
|..+..++.
T Consensus 270 ~~~la~~~~ 278 (406)
T 3sf4_A 270 CYSLGNTYT 278 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 301
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.05 E-value=1.7e-05 Score=81.09 Aligned_cols=173 Identities=10% Similarity=-0.025 Sum_probs=130.9
Q ss_pred HhcCCCCcHHHHHHHHHHHHh------CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChH-
Q 005381 34 NHHNHIYSKEAVELSTKLLET------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG- 106 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~------nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~- 106 (699)
....|++ ++|+..+.+++.+ .|....+|...+.+....+. +++++..+++++...|+...
T Consensus 53 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~ 119 (338)
T 3ro2_A 53 YFYLHDY-AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN------------FDEAIVCCQRHLDISRELNDK 119 (338)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCH-HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHHHHHhcCc
Confidence 4456666 7999999999888 66667888888888887765 89999999999987766533
Q ss_pred -----HHHHHHHHHHhCCCC--------------------hHHHHHHHHHHHHh------CCCChhhhhHHHHHHHhcCC
Q 005381 107 -----AWHHRKWILSKGHSS--------------------IDNELRLLDKFQKA------DSRNFHAWNYRRFVAASMNR 155 (699)
Q Consensus 107 -----aW~hR~w~L~~~~~~--------------------~~~EL~~~~k~L~~------dprN~haW~yR~~vl~~l~~ 155 (699)
+|...+.+.... +. ++++++.+++++++ .+....+|...+.+....+.
T Consensus 120 ~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 198 (338)
T 3ro2_A 120 VGEARALYNLGNVYHAK-GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN 198 (338)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHc-CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 788888887765 45 88999999998876 34445678888888888888
Q ss_pred ChHHHHHHHHHHHHhccCchH------HHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC------chh
Q 005381 156 SEEDELKYTEDMICNNFSNYS------AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD------QSG 223 (699)
Q Consensus 156 ~~e~EL~~~~~~I~~n~sN~S------AW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d------~Sa 223 (699)
+ ++.++++.++++..+.... +|...+.++...+. ++++++.+.+++...|.. ..+
T Consensus 199 ~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (338)
T 3ro2_A 199 F-RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE------------FETASEYYKKTLLLARQLKDRAVEAQS 265 (338)
T ss_dssp H-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 8 6789999999988766544 77777777766644 788888888888877765 334
Q ss_pred HHHHHHHHcC
Q 005381 224 WFYHLWLLDQ 233 (699)
Q Consensus 224 W~Y~~~Ll~~ 233 (699)
+..+..++..
T Consensus 266 ~~~la~~~~~ 275 (338)
T 3ro2_A 266 CYSLGNTYTL 275 (338)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 302
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.04 E-value=8.4e-07 Score=101.05 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=41.8
Q ss_pred EEccCCCCCccc------CCCCCcccCEEEccCCCCCCC-----cC-CccccccceeecccCCCCCCCCCcccccccccc
Q 005381 538 LQLKNLSLSRLG------SFDKLLWVQMLDLSHNELRSI-----EG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLR 605 (699)
Q Consensus 538 L~Ls~n~l~~l~------~l~~L~~L~~LdLS~N~L~~l-----~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~ 605 (699)
|+|++|.++..+ .+..+++|+.|++++|.++.+ +. +..+++|+.|++++|.+.++ +..+..+++|+
T Consensus 169 L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l--~~~~~~~~~L~ 246 (592)
T 3ogk_B 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL--VGFFKAAANLE 246 (592)
T ss_dssp EECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG--HHHHHHCTTCC
T ss_pred EECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH--HHHHhhhhHHH
Confidence 666666554221 234556677777777766522 22 45566677777777666554 34455666666
Q ss_pred cccccc
Q 005381 606 ALNISY 611 (699)
Q Consensus 606 ~L~Ls~ 611 (699)
.|+++.
T Consensus 247 ~L~l~~ 252 (592)
T 3ogk_B 247 EFCGGS 252 (592)
T ss_dssp EEEECB
T ss_pred hhcccc
Confidence 666654
No 303
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.02 E-value=0.00012 Score=78.20 Aligned_cols=159 Identities=9% Similarity=-0.106 Sum_probs=128.1
Q ss_pred HhcCCCCcHHHHHHHHHHHHhC------CCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC---
Q 005381 34 NHHNHIYSKEAVELSTKLLETN------PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS--- 104 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~n------P~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs--- 104 (699)
....|++ ++|+..+.+++.+. |....+++..+.+...++. +.+++..+++++...++.
T Consensus 111 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~------------~~~A~~~~~~al~~~~~~~~~ 177 (378)
T 3q15_A 111 EFDQKEY-VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ------------THVSMYHILQALDIYQNHPLY 177 (378)
T ss_dssp HHHTTCH-HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHHCCH-HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHHHHHhCCCc
Confidence 3467777 89999999999873 2345677778888887765 899999999999865542
Q ss_pred ----hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC------ChhhhhHHHHHHHhcCCChHHHHHHHHHHHH-----
Q 005381 105 ----YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSR------NFHAWNYRRFVAASMNRSEEDELKYTEDMIC----- 169 (699)
Q Consensus 105 ----y~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dpr------N~haW~yR~~vl~~l~~~~e~EL~~~~~~I~----- 169 (699)
..++...+.+.... +.++++++.+++++++.++ -..++...+++....|.+ +++++++.++++
T Consensus 178 ~~~~~~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~-~~A~~~~~~al~~~~~~ 255 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDF-KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD-QMAVEHFQKAAKVSREK 255 (378)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHhh
Confidence 34677778888777 6999999999999986432 235778889999999998 789999999999
Q ss_pred hccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCC
Q 005381 170 NNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD 219 (699)
Q Consensus 170 ~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~ 219 (699)
.+|....++...+.+...++. ++++++++++|+...+.
T Consensus 256 ~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 256 VPDLLPKVLFGLSWTLCKAGQ------------TQKAFQFIEEGLDHITA 293 (378)
T ss_dssp CGGGHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCCT
T ss_pred CChhHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHHH
Confidence 888888899999988887754 79999999999998654
No 304
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.94 E-value=7.5e-05 Score=61.42 Aligned_cols=82 Identities=18% Similarity=0.124 Sum_probs=53.2
Q ss_pred chHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 005381 58 LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADS 137 (699)
Q Consensus 58 ~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dp 137 (699)
...+|...+.+....++ +++++..+++++..+|.+..+|...+.++.+. +.++++++.++++++++|
T Consensus 8 ~~~~~~~la~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGD------------YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCC
Confidence 44566666666555543 66677777777777777777777666666655 466677777777777777
Q ss_pred CChhhhhHHHHHHHh
Q 005381 138 RNFHAWNYRRFVAAS 152 (699)
Q Consensus 138 rN~haW~yR~~vl~~ 152 (699)
.+..+|...+.+...
T Consensus 75 ~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 75 NNAEAKQNLGNAKQK 89 (91)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 766666666655543
No 305
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.91 E-value=6.1e-05 Score=64.39 Aligned_cols=83 Identities=5% Similarity=0.007 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 005381 59 YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (699)
Q Consensus 59 ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dpr 138 (699)
..+|..++.+....++ +++++..+++++..+|++..+|..++.++... +.++++++.++++++++|.
T Consensus 4 ~~~~~~~g~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGL------------YREAVHCYDQLITAQPQNPVGYSNKAMALIKL-GEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHTTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCC
Confidence 3455555555554433 55666666666666666666666666655554 3556666666666666665
Q ss_pred C------hhhhhHHHHHHHhcC
Q 005381 139 N------FHAWNYRRFVAASMN 154 (699)
Q Consensus 139 N------~haW~yR~~vl~~l~ 154 (699)
+ ..++..++.+...++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 71 AEHVAIRSKLQYRLELAQGAVG 92 (111)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 5 444554454444443
No 306
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.89 E-value=9.2e-06 Score=92.39 Aligned_cols=108 Identities=13% Similarity=0.062 Sum_probs=53.7
Q ss_pred CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchh
Q 005381 573 LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSY 652 (699)
Q Consensus 573 l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~ 652 (699)
+..+++|+.|+++++....+ +..+..+++|+.|+|++|.++...+ ...+..++.+..+.+. +. ...
T Consensus 266 l~~~~~L~~L~l~~~~~~~l--~~~~~~~~~L~~L~Ls~~~l~~~~~--~~~~~~~~~L~~L~L~-~~---------~~~ 331 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEM--PILFPFAAQIRKLDLLYALLETEDH--CTLIQKCPNLEVLETR-NV---------IGD 331 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTG--GGGGGGGGGCCEEEETTCCCCHHHH--HHHHTTCTTCCEEEEE-GG---------GHH
T ss_pred hhccccccccCccccchhHH--HHHHhhcCCCcEEecCCCcCCHHHH--HHHHHhCcCCCEEecc-Cc---------cCH
Confidence 34444455555544433322 3445567778888888777644321 1111222222222222 11 111
Q ss_pred hhhhccCCCC-CccEEEecC-----------CCCCCccchHHHhhcCCccccccC
Q 005381 653 WEAYFILKGL-NLTQFDIVG-----------NAIVNEKFKSFLIKVLPGLKWLDG 695 (699)
Q Consensus 653 ~~~p~~l~~L-~L~~LdLs~-----------N~l~~~~~~~~~~~~l~~L~~LD~ 695 (699)
...+..+..+ +|+.|+|++ |.+....+ ..+...+++|+.|+-
T Consensus 332 ~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~-~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL-IALAQGCQELEYMAV 385 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH-HHHHHHCTTCSEEEE
T ss_pred HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH-HHHHhhCccCeEEEe
Confidence 2233444566 899999993 55542223 234556888888863
No 307
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.86 E-value=6.7e-05 Score=80.06 Aligned_cols=149 Identities=7% Similarity=-0.019 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005381 61 AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ------NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQK 134 (699)
Q Consensus 61 aWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~------nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~ 134 (699)
.|.+++.+....+. +++++..+++++.. .+....+|+..+++.... +.++++++++.++++
T Consensus 105 ~~~~~g~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~~al~ 171 (383)
T 3ulq_A 105 FNFFRGMYELDQRE------------YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM-KQTYFSMDYARQAYE 171 (383)
T ss_dssp HHHHHHHHHHHTTC------------HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC------------HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 45558887777654 99999999999986 233557889999999887 699999999999999
Q ss_pred hCCCC-------hhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCch------HHHHHHHHHHHHhhhhhccCccchhc
Q 005381 135 ADSRN-------FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY------SAWHNRSLLLSNLLKRKVEGFVSKEK 201 (699)
Q Consensus 135 ~dprN-------~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~------SAW~~R~~ll~~l~~~~~~~~~~~~~ 201 (699)
+.++. ..++...+.+...+|.+ +++++++.++++..+... .++++.+.+...++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~----------- 239 (383)
T 3ulq_A 172 IYKEHEAYNIRLLQCHSLFATNFLDLKQY-EDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ----------- 239 (383)
T ss_dssp HHHTCSTTHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHhCccchHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC-----------
Confidence 85544 35888889999999998 789999999999866544 488888888877654
Q ss_pred hHHHHHHHHHHHHH-----hC-CCCchhHHHHHHHHcCcC
Q 005381 202 VLPDEYEFVHQAIF-----TD-PDDQSGWFYHLWLLDQTV 235 (699)
Q Consensus 202 ~~~eeL~~~~~ai~-----~d-P~d~SaW~Y~~~Ll~~~~ 235 (699)
++++++++.+|+. .+ |....+++.+..++....
T Consensus 240 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 278 (383)
T 3ulq_A 240 -YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG 278 (383)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCC
Confidence 8999999999998 56 777778888777775543
No 308
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.84 E-value=5e-05 Score=65.12 Aligned_cols=70 Identities=10% Similarity=0.010 Sum_probs=32.8
Q ss_pred CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 005381 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNF 172 (699)
Q Consensus 101 nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~ 172 (699)
+|++..+|...+.++... +.++++++.++++++++|.+..+|.+.+.+...+|.+ +++++++.++++..+
T Consensus 3 ~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKH-DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRT-DDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhhh
Confidence 444444554444444443 3444555555555555555555555555444444444 344444444444443
No 309
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.83 E-value=9.8e-05 Score=60.69 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=75.2
Q ss_pred CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHH
Q 005381 103 KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRS 182 (699)
Q Consensus 103 Ksy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~ 182 (699)
.+..+|...+.++... +.+++++.+++++++.+|.+..+|...+.+....+.+ +++++++.++++.+|.+..+|..++
T Consensus 7 ~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4567888888888876 6999999999999999999999999999999999998 7899999999999999999999988
Q ss_pred HHHHH
Q 005381 183 LLLSN 187 (699)
Q Consensus 183 ~ll~~ 187 (699)
.++..
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87654
No 310
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.0001 Score=62.95 Aligned_cols=85 Identities=7% Similarity=0.034 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCc------hHH
Q 005381 104 SYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN------YSA 177 (699)
Q Consensus 104 sy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN------~SA 177 (699)
+..+|..++.++... +.++++++.++++++++|.+..+|..++.+...++.+ ++.+++++++++.+|.+ ..+
T Consensus 3 ~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQ-GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEY-TQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 457899999998876 6999999999999999999999999999999999998 78999999999999999 777
Q ss_pred HHHHHHHHHHhhh
Q 005381 178 WHNRSLLLSNLLK 190 (699)
Q Consensus 178 W~~R~~ll~~l~~ 190 (699)
+..++.+...++.
T Consensus 81 ~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 81 QYRLELAQGAVGS 93 (111)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766653
No 311
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.82 E-value=3e-05 Score=65.55 Aligned_cols=81 Identities=16% Similarity=0.068 Sum_probs=43.4
Q ss_pred CCCCcHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 005381 37 NHIYSKEAVELSTKLLETNPELYT-AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (699)
Q Consensus 37 ~~~~~~eaL~~~~~~L~~nP~~yt-aWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L 115 (699)
.|++ ++|+..+.+++..+|++.. +|..++.++...+. +++++..+++++..+|++..+|.+
T Consensus 13 ~~~~-~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~----- 74 (99)
T 2kc7_A 13 QGDI-ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD------------WQKALNNYQSAIELNPDSPALQAR----- 74 (99)
T ss_dssp HTCH-HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHCTTSTHHHHH-----
T ss_pred cCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCcHHHHHH-----
Confidence 3444 4556666666666666555 55555555555543 555556666666666655555533
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCC
Q 005381 116 SKGHSSIDNELRLLDKFQKADSRN 139 (699)
Q Consensus 116 ~~~~~~~~~EL~~~~k~L~~dprN 139 (699)
..+.+.+.++++++..+|.+
T Consensus 75 ----~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 ----KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp ----HHHHHHHHHHCCTTHHHHCC
T ss_pred ----HHHHHHHHHHHHHhccCccc
Confidence 12344455555555554443
No 312
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.81 E-value=0.00028 Score=69.18 Aligned_cols=162 Identities=9% Similarity=-0.075 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC--
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH-- 119 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~-- 119 (699)
.+|+..+.++... .+..+++.-+.++...+ ++++++.++++++.. .+..+++.-+.++....
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~------------~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~ 66 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSG------------DYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQ 66 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTS
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC
Confidence 3455555555543 45555555555554432 255666666665543 34555555555554310
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHh----cCCChHHHHHHHHHHHHhccC--chHHHHHHHHHHHHhhhhhc
Q 005381 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAAS----MNRSEEDELKYTEDMICNNFS--NYSAWHNRSLLLSNLLKRKV 193 (699)
Q Consensus 120 ~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~----l~~~~e~EL~~~~~~I~~n~s--N~SAW~~R~~ll~~l~~~~~ 193 (699)
.+++++++++.++++ +.+..|+..-+.+... .+.+ ++.++++.++++..++ +..|+++.+.++..-.
T Consensus 67 ~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~-~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~---- 139 (212)
T 3rjv_A 67 ADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDV-AHAITLLQDAARDSESDAAVDAQMLLGLIYASGV---- 139 (212)
T ss_dssp CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCH-HHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTS----
T ss_pred CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCH-HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCC----
Confidence 145566666666533 3455555555555443 2222 4556666666665553 3555555555543310
Q ss_pred cCccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005381 194 EGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (699)
Q Consensus 194 ~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll 231 (699)
...+.++++++++.+|+.. |++..+++.+..++
T Consensus 140 ----g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 140 ----HGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMF 172 (212)
T ss_dssp ----SSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHH
T ss_pred ----CCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 0012245566666666655 55555555555544
No 313
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.80 E-value=6.4e-05 Score=64.40 Aligned_cols=54 Identities=9% Similarity=0.107 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 005381 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN 139 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN 139 (699)
+.+++++..++++++.+|++..+|..++.++... +.++++++.++++++++|++
T Consensus 21 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 21 DNASRALALFEELVETDPDYVGTYYHLGKLYERL-DRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhhhcC
Confidence 4566677777777777777777777777666665 46667777777776665543
No 314
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.79 E-value=4e-05 Score=64.75 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=66.2
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChh-hhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Q 005381 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFH-AWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLL 189 (699)
Q Consensus 111 R~w~L~~~~~~~~~EL~~~~k~L~~dprN~h-aW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~ 189 (699)
++.++... +.++++++.++++++.+|.+.. +|..++.+....+.+ ++++++++++++.+|.+..+|.+.
T Consensus 6 ~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~-------- 75 (99)
T 2kc7_A 6 TIKELINQ-GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDW-QKALNNYQSAIELNPDSPALQARK-------- 75 (99)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTSTHHHHHH--------
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHHHH--------
Confidence 33344333 4788888888888888888888 888888888888877 678888888888888888887551
Q ss_pred hhhccCccchhchHHHHHHHHHHHHHhCCCCch
Q 005381 190 KRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS 222 (699)
Q Consensus 190 ~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~S 222 (699)
.+.+.++++.+++..+|++.+
T Consensus 76 ------------~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 76 ------------MVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp ------------HHHHHHHHHCCTTHHHHCCSS
T ss_pred ------------HHHHHHHHHHHHhccCccccc
Confidence 146777777777777776643
No 315
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.79 E-value=2e-05 Score=83.17 Aligned_cols=78 Identities=17% Similarity=0.278 Sum_probs=68.3
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--Cccccccc-eeecccCCCCCCCCCccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLS-CLNLSNNILGSFTALEPIRQLKSLRALNISYN 612 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~-~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N 612 (699)
++|++|.++.|+ .|.++.+|+.|+|++| +..|+. |.++.+|+ .+++.+ .++.+. ...|..|++|+.|+++.|
T Consensus 231 l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~-~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 231 LDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE-FGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp EECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC-TTTTTTCTTEEEEEECSS
T ss_pred EECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc-hhhhhCCccCCEEEeCCC
Confidence 999999999887 7999999999999998 888887 99999999 999988 777763 377899999999999999
Q ss_pred cCCCCC
Q 005381 613 EIGAHS 618 (699)
Q Consensus 613 ~I~~lp 618 (699)
.|+.++
T Consensus 308 ~i~~I~ 313 (329)
T 3sb4_A 308 KITTLG 313 (329)
T ss_dssp CCCEEC
T ss_pred ccCccc
Confidence 998885
No 316
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.73 E-value=0.0006 Score=69.98 Aligned_cols=137 Identities=12% Similarity=-0.022 Sum_probs=102.4
Q ss_pred hhHHHHHHHHHHHHHhCCCChH-----HHHHH-HHHHHhCCCChHHHHHHHHHHHHhCCCC------hhhhhHHHHHHHh
Q 005381 85 SILDEELRVVESALRQNFKSYG-----AWHHR-KWILSKGHSSIDNELRLLDKFQKADSRN------FHAWNYRRFVAAS 152 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPKsy~-----aW~hR-~w~L~~~~~~~~~EL~~~~k~L~~dprN------~haW~yR~~vl~~ 152 (699)
..++++++.++.++...|+... .|++. +.+.... +.+++++++++++++..+++ ..+|+..+.+...
T Consensus 89 ~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 2qfc_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK-VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 3489999999999998887543 33333 3333333 68999999999999877655 5588889999999
Q ss_pred cCCChHHHHHHHHHHH---HhccCch----HHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC-----
Q 005381 153 MNRSEEDELKYTEDMI---CNNFSNY----SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD----- 220 (699)
Q Consensus 153 l~~~~e~EL~~~~~~I---~~n~sN~----SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d----- 220 (699)
.+.+ +++++++.+++ +..+.+. .++++.+.++..++. ++++++++.+|+...+..
T Consensus 168 ~~~~-~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~------------y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 168 NGYL-KKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR------------YEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp TTCH-HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTBCSS
T ss_pred cCCH-HHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh------------HHHHHHHHHHHHHHHHhcCcHHH
Confidence 9998 78999999999 4455533 688888888877754 899999999999876431
Q ss_pred -chhHHHHHHHHcCcC
Q 005381 221 -QSGWFYHLWLLDQTV 235 (699)
Q Consensus 221 -~SaW~Y~~~Ll~~~~ 235 (699)
..+++....+.....
T Consensus 235 ~~~~~~~lg~~y~~~g 250 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLE 250 (293)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 455666666655443
No 317
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.72 E-value=0.00041 Score=71.95 Aligned_cols=143 Identities=10% Similarity=0.016 Sum_probs=108.9
Q ss_pred CCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC------hHHHHHH
Q 005381 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS------YGAWHHR 111 (699)
Q Consensus 38 ~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs------y~aW~hR 111 (699)
+.+ ++|+.++.++. .++...+ .+++++..+.+++...++. ..++...
T Consensus 30 ~~~-~~A~~~~~~a~--------------~~~~~~g------------~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 30 PDY-DSAASEYAKAA--------------VAFKNAK------------QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CCH-HHHHHHHHHHH--------------HHHHHTT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHH--------------HHHHHcC------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 443 78888888763 2333443 3899999999999877654 4467777
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCC------hhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCc------hHHHH
Q 005381 112 KWILSKGHSSIDNELRLLDKFQKADSRN------FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN------YSAWH 179 (699)
Q Consensus 112 ~w~L~~~~~~~~~EL~~~~k~L~~dprN------~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN------~SAW~ 179 (699)
+.++... +.++++++++++++++.+.. ..+|...+.+... +.+ ++.++++.++++..+.. ..++.
T Consensus 83 g~~~~~~-g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~-~~A~~~~~~Al~~~~~~~~~~~~~~~~~ 159 (307)
T 2ifu_A 83 GMMLKDL-QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDL-SKAVHLYQQAAAVFENEERLRQAAELIG 159 (307)
T ss_dssp HHHHHHT-TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCH-HHHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 7777776 68999999999999986432 3577778888887 877 78999999999988754 35677
Q ss_pred HHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCch
Q 005381 180 NRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS 222 (699)
Q Consensus 180 ~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~S 222 (699)
..+.++..+++ ++++++.+.+++.+.|++..
T Consensus 160 ~lg~~~~~~g~------------~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 160 KASRLLVRQQK------------FDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp HHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC------------HHHHHHHHHHHHHHHHHcCC
Confidence 77777776644 89999999999999886653
No 318
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.72 E-value=0.00027 Score=67.16 Aligned_cols=160 Identities=13% Similarity=-0.025 Sum_probs=114.3
Q ss_pred CCCCcHHHHHHHHHHHHhCC-CchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHH------hCCCChHHHH
Q 005381 37 NHIYSKEAVELSTKLLETNP-ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR------QNFKSYGAWH 109 (699)
Q Consensus 37 ~~~~~~eaL~~~~~~L~~nP-~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~------~nPKsy~aW~ 109 (699)
.|.+ ++|.+....+. -+| ....+|+..+.+....++ +++++..+++++. ..|....+|.
T Consensus 5 ~g~~-~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 70 (203)
T 3gw4_A 5 AHDY-ALAERQAQALL-AHPATASGARFMLGYVYAFMDR------------FDEARASFQALQQQAQKSGDHTAEHRALH 70 (203)
T ss_dssp --CH-HHHHHHHHHHH-TSTTTHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cccH-HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhCc------------HHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 4555 56666443333 355 677889999988887765 8999999999998 5666778888
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHh---CC----CChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccC--ch----H
Q 005381 110 HRKWILSKGHSSIDNELRLLDKFQKA---DS----RNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS--NY----S 176 (699)
Q Consensus 110 hR~w~L~~~~~~~~~EL~~~~k~L~~---dp----rN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~s--N~----S 176 (699)
..+++.... +.++++++++.+++++ .+ ....++...+.+....|.+ ++.++++.++++.... +. .
T Consensus 71 ~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 71 QVGMVERMA-GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL-AGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHhccchHHHHH
Confidence 899999877 6999999999999998 33 2346678889998889988 6788999999876432 22 1
Q ss_pred HHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhH
Q 005381 177 AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (699)
Q Consensus 177 AW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW 224 (699)
++...+.+....+. ++++++++.+++.+.......|
T Consensus 149 ~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~ 184 (203)
T 3gw4_A 149 AFRGLGDLAQQEKN------------LLEAQQHWLRARDIFAELEDSE 184 (203)
T ss_dssp HHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHCcC------------HHHHHHHHHHHHHHHHHcCCHH
Confidence 23455555544433 7889999998887655443333
No 319
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.65 E-value=7.1e-06 Score=93.29 Aligned_cols=19 Identities=5% Similarity=0.102 Sum_probs=11.5
Q ss_pred HHHHhcccccccCCCCCcc
Q 005381 480 EVLELYNDLMRLDPTHVQY 498 (699)
Q Consensus 480 ~~l~~l~~L~~LDls~n~~ 498 (699)
..+..++.|+.|+++.+..
T Consensus 60 ~~~~~~~~L~~L~L~~~~~ 78 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPH 78 (594)
T ss_dssp HHHHHCTTCCEEEEECSCG
T ss_pred HHHhhCCCceEEeccCCCc
Confidence 4455666666666666543
No 320
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.65 E-value=4e-05 Score=83.62 Aligned_cols=118 Identities=10% Similarity=0.104 Sum_probs=66.5
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCC-----CCCCCccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILG-----SFTALEPIRQLKSLRALN 608 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~-----~l~~~~~l~~l~~L~~L~ 608 (699)
+.+..+ ++.|+ .|.+ .+|+.+.| .|.++.++. |.++++|+.+.+.+|.+. .+. ...|..|++|+.+.
T Consensus 231 l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~-~~aF~~c~~L~~l~ 306 (401)
T 4fdw_A 231 IEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH-PYCLEGCPKLARFE 306 (401)
T ss_dssp EECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC-TTTTTTCTTCCEEC
T ss_pred EecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEEC-HHHhhCCccCCeEE
Confidence 555543 45444 4444 56666666 344666655 777777777777777654 232 25577777777777
Q ss_pred cccccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCCCccEEEecCCCC
Q 005381 609 ISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGLNLTQFDIVGNAI 674 (699)
Q Consensus 609 Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L~L~~LdLs~N~l 674 (699)
|. |.+..++...+..... +..+.+..| +..+ ...+|.+++|+.|++++|.+
T Consensus 307 l~-~~i~~I~~~aF~~c~~---L~~l~lp~~-l~~I----------~~~aF~~~~L~~l~l~~n~~ 357 (401)
T 4fdw_A 307 IP-ESIRILGQGLLGGNRK---VTQLTIPAN-VTQI----------NFSAFNNTGIKEVKVEGTTP 357 (401)
T ss_dssp CC-TTCCEECTTTTTTCCS---CCEEEECTT-CCEE----------CTTSSSSSCCCEEEECCSSC
T ss_pred eC-CceEEEhhhhhcCCCC---ccEEEECcc-ccEE----------cHHhCCCCCCCEEEEcCCCC
Confidence 77 4466664322222111 222222222 1111 12466666899999998877
No 321
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.57 E-value=3.4e-05 Score=79.31 Aligned_cols=61 Identities=31% Similarity=0.348 Sum_probs=30.4
Q ss_pred CcccCEEEccCCCCCCCcC----CccccccceeecccCCCCCCCCCccccccccccccccccccCC
Q 005381 554 LLWVQMLDLSHNELRSIEG----LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIG 615 (699)
Q Consensus 554 L~~L~~LdLS~N~L~~l~~----l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~ 615 (699)
+++|+.|+||+|+|+.+++ +..+++|+.|+|++|+|+++..+..+..+ +|+.|+|++|++.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 4445555555555544432 33555555555555555554222223323 5555566555554
No 322
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.56 E-value=1.2e-05 Score=78.00 Aligned_cols=104 Identities=17% Similarity=0.236 Sum_probs=74.7
Q ss_pred EEccCC-CCCccc------CCCCCcccCEEEccCCCCCC-----CcC-CccccccceeecccCCCCCCC---CCcccccc
Q 005381 538 LQLKNL-SLSRLG------SFDKLLWVQMLDLSHNELRS-----IEG-LEALQLLSCLNLSNNILGSFT---ALEPIRQL 601 (699)
Q Consensus 538 L~Ls~n-~l~~l~------~l~~L~~L~~LdLS~N~L~~-----l~~-l~~L~~L~~L~Ls~N~l~~l~---~~~~l~~l 601 (699)
|+|++| .+..-+ .+...++|++|+|++|.|+. +.. +...+.|+.|+|++|.|+... ....+...
T Consensus 41 L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n 120 (185)
T 1io0_A 41 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSN 120 (185)
T ss_dssp EECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGC
T ss_pred EEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhC
Confidence 999998 887422 56677899999999999965 222 556678999999999987521 01345667
Q ss_pred cccccccc--ccccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 602 KSLRALNI--SYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 602 ~~L~~L~L--s~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
++|+.|+| ++|.|+... .. .+...+... +|+.|+|++|.|
T Consensus 121 ~~L~~L~L~~~~N~i~~~g---~~------------------------------~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 121 TSLIELRIDNQSQPLGNNV---EM------------------------------EIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SSCCEEECCCCSSCCCHHH---HH------------------------------HHHHHHHHCSSCCEEECCCSSH
T ss_pred CCceEEEecCCCCCCCHHH---HH------------------------------HHHHHHHhCCCcCEEeccCCCC
Confidence 78999999 889887642 10 111244445 899999999999
No 323
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.52 E-value=0.0001 Score=80.37 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=47.3
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
+.+.. .++.|+ .|.+|.+|+.++|++|.++.++. |. ..+|+.+.|..| ++.+. ...|..|++|+.+.+..|
T Consensus 162 i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~-~~aF~~~~~L~~l~l~~~- 236 (401)
T 4fdw_A 162 IVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIG-SQAFLKTSQLKTIEIPEN- 236 (401)
T ss_dssp EECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEEC-TTTTTTCTTCCCEECCTT-
T ss_pred EEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheeh-hhHhhCCCCCCEEecCCC-
Confidence 56654 555554 67777777777777777777766 44 466777777643 55543 255666777777777653
Q ss_pred CCCCC
Q 005381 614 IGAHS 618 (699)
Q Consensus 614 I~~lp 618 (699)
++.++
T Consensus 237 l~~I~ 241 (401)
T 4fdw_A 237 VSTIG 241 (401)
T ss_dssp CCEEC
T ss_pred ccCcc
Confidence 44443
No 324
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.43 E-value=1.7e-05 Score=76.77 Aligned_cols=119 Identities=9% Similarity=0.067 Sum_probs=80.1
Q ss_pred HHHHHhcccccccCCCCC-ccccchhhhHHhhhhccchHHHhhhhccCCCCCCCCCCCCeEEccCCCCCccc------CC
Q 005381 479 EEVLELYNDLMRLDPTHV-QYYKDQHSLVLLQQVTSNWESLLSRCFHYSNSPSNRGSPMCLQLKNLSLSRLG------SF 551 (699)
Q Consensus 479 ~~~l~~l~~L~~LDls~n-~~~~~l~sl~~l~~l~~~~~~l~~~~~~l~~l~~l~L~~~~L~Ls~n~l~~l~------~l 551 (699)
..++...+.|++|++++| .+ .+.. ...+...+.....++ .|+|++|.|..-+ .+
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i-~~~g-----------~~~l~~~L~~~~~L~-------~L~Ls~n~i~~~g~~~l~~~L 89 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNI-PVPT-----------LKACAEALKTNTYVK-------KFSIVGTRSNDPVAFALAEML 89 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTC-CHHH-----------HHHHHHHHTTCCSCC-------EEECTTSCCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEecCCCCC-CHHH-----------HHHHHHHHHhCCCcC-------EEECcCCCCChHHHHHHHHHH
Confidence 345667788999999998 52 1111 111122222222333 3999999998532 45
Q ss_pred CCCcccCEEEccCCCCCC-----CcC-Cccccccceeec--ccCCCCCCC---CCccccccccccccccccccCCC
Q 005381 552 DKLLWVQMLDLSHNELRS-----IEG-LEALQLLSCLNL--SNNILGSFT---ALEPIRQLKSLRALNISYNEIGA 616 (699)
Q Consensus 552 ~~L~~L~~LdLS~N~L~~-----l~~-l~~L~~L~~L~L--s~N~l~~l~---~~~~l~~l~~L~~L~Ls~N~I~~ 616 (699)
...+.|++|+|++|.|+. +.. +...+.|+.|+| ++|.|+.-. ....+...++|+.|+|++|.|+.
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 666899999999999976 223 777788999999 889987521 01234556889999999998864
No 325
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.41 E-value=0.0047 Score=60.24 Aligned_cols=167 Identities=11% Similarity=-0.008 Sum_probs=127.0
Q ss_pred CCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005381 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (699)
Q Consensus 37 ~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~ 116 (699)
.+.+ ++|+.++.+++.. .+..+++.-+.++.. +. +.+++++++.++++++. +.+..+++.-+.++.
T Consensus 31 ~~~~-~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g--------~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~ 96 (212)
T 3rjv_A 31 SGDY-QKAEYWAQKAAAQ--GDGDALALLAQLKIR-NP--------QQADYPQARQLAEKAVE--AGSKSGEIVLARVLV 96 (212)
T ss_dssp HTCH-HHHHHHHHHHHHT--TCHHHHHHHHHHTTS-ST--------TSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHT
T ss_pred CCCH-HHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CC--------CCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
Confidence 4555 8999999999875 688999988887765 21 12358999999999964 678999999999987
Q ss_pred hC---CCChHHHHHHHHHHHHhCC--CChhhhhHHHHHHHh----cCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 005381 117 KG---HSSIDNELRLLDKFQKADS--RNFHAWNYRRFVAAS----MNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSN 187 (699)
Q Consensus 117 ~~---~~~~~~EL~~~~k~L~~dp--rN~haW~yR~~vl~~----l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~ 187 (699)
.. ..+++++++++.++++.++ .+..|+..-+.+... .+.+ ++.++++.++++. +.+..|+++.+.++..
T Consensus 97 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~-~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 97 NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD-VKASEYFKGSSSL-SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH-HHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence 51 3589999999999999988 458999999998877 3334 7899999999998 6777788888887654
Q ss_pred hhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHHH
Q 005381 188 LLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYH 227 (699)
Q Consensus 188 l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~ 227 (699)
-.. | .....+++++.++.+|+... +..+-..+
T Consensus 175 g~g----g--~~~~d~~~A~~~~~~A~~~g--~~~A~~~l 206 (212)
T 3rjv_A 175 GEK----G--FIEPNKQKALHWLNVSCLEG--FDTGCEEF 206 (212)
T ss_dssp CBT----T--TBCCCHHHHHHHHHHHHHHT--CHHHHHHH
T ss_pred CCC----C--CCCCCHHHHHHHHHHHHHcC--CHHHHHHH
Confidence 210 0 01223799999999999874 45554443
No 326
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.39 E-value=0.0015 Score=58.59 Aligned_cols=133 Identities=8% Similarity=-0.111 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005381 60 TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY------GAWHHRKWILSKGHSSIDNELRLLDKFQ 133 (699)
Q Consensus 60 taWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy------~aW~hR~w~L~~~~~~~~~EL~~~~k~L 133 (699)
.+|...+.+....+. +++++..+++++...++.. .++...+++.... +.++++++++++++
T Consensus 10 ~~~~~l~~~~~~~~~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGN------------FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL-GEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC------------HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 466677777766654 8899999999998766543 4788888888877 69999999999999
Q ss_pred HhCCCC------hhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCc------hHHHHHHHHHHHHhhhhhccCccchhc
Q 005381 134 KADSRN------FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN------YSAWHNRSLLLSNLLKRKVEGFVSKEK 201 (699)
Q Consensus 134 ~~dprN------~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN------~SAW~~R~~ll~~l~~~~~~~~~~~~~ 201 (699)
++.++. ..++...+.+....+.+ ++.++++.++++..... ..++...+.+....+
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g------------ 143 (164)
T 3ro3_A 77 LLARQLKDRAVEAQSCYSLGNTYTLLQDY-EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG------------ 143 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc------------
Confidence 887654 56788888888889988 68899999998864322 234444555444443
Q ss_pred hHHHHHHHHHHHHHhCC
Q 005381 202 VLPDEYEFVHQAIFTDP 218 (699)
Q Consensus 202 ~~~eeL~~~~~ai~~dP 218 (699)
.++++++++.+++.+..
T Consensus 144 ~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 144 NHDQAMHFAEKHLEISR 160 (164)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 37899999999887643
No 327
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.35 E-value=0.0015 Score=66.91 Aligned_cols=120 Identities=13% Similarity=-0.027 Sum_probs=96.3
Q ss_pred CCCCcHHHHHHHHHHHHhCCCch------HHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHH-------hCCC
Q 005381 37 NHIYSKEAVELSTKLLETNPELY------TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR-------QNFK 103 (699)
Q Consensus 37 ~~~~~~eaL~~~~~~L~~nP~~y------taWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~-------~nPK 103 (699)
.+.+ ++|+..+.++|.+.++.. .+++.-+.+....+. +++++..+++++. ..+.
T Consensus 128 ~~~~-~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~ 194 (293)
T 3u3w_A 128 KVDY-EYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGY------------LKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp SSCH-HHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred ccCH-HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHhcccchhH
Confidence 3455 899999999999755433 367888888877755 8999999999994 2233
Q ss_pred ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC------hhhhhHHHHHHHhcCCChHHHHHHHHHHHHh
Q 005381 104 SYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN------FHAWNYRRFVAASMNRSEEDELKYTEDMICN 170 (699)
Q Consensus 104 sy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN------~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~ 170 (699)
...+++..++++.+. +.++++++++++++++.+.+ ..+|...+.+...+|...+++++++.+++..
T Consensus 195 ~~~~~~nlg~~y~~~-~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 195 DVKVRYNHAKALYLD-SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 445889999999987 69999999999999987555 5789999999999996546899998888874
No 328
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.29 E-value=2.2e-05 Score=89.28 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=18.3
Q ss_pred cCCCC-CccEEEecCCCCCCccchHHHhhcCCccc
Q 005381 658 ILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLK 691 (699)
Q Consensus 658 ~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~ 691 (699)
.+..+ +|+.|+|++|++.. .....+...+|.|+
T Consensus 501 ~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 501 NASKLETMRSLWMSSCSVSF-GACKLLGQKMPKLN 534 (594)
T ss_dssp TGGGGGGSSEEEEESSCCBH-HHHHHHHHHCTTEE
T ss_pred HHHhCCCCCEEeeeCCCCCH-HHHHHHHHhCCCCE
Confidence 34445 77777887777722 22223335566653
No 329
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.28 E-value=0.0015 Score=69.51 Aligned_cols=150 Identities=7% Similarity=-0.123 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005381 60 TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF------KSYGAWHHRKWILSKGHSSIDNELRLLDKFQ 133 (699)
Q Consensus 60 taWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nP------Ksy~aW~hR~w~L~~~~~~~~~EL~~~~k~L 133 (699)
-.|.+++......+. +++++..+++++...+ ....+++..+.+.... +.+++++.++.+++
T Consensus 102 ~~~~~~g~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~-~~~~~A~~~~~~al 168 (378)
T 3q15_A 102 YSLFFRGMYEFDQKE------------YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM-KQTHVSMYHILQAL 168 (378)
T ss_dssp HHHHHHHHHHHHTTC------------HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC------------HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHH
Confidence 367778887776654 9999999999997632 3456777888888877 69999999999999
Q ss_pred HhCCCC-------hhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccC------chHHHHHHHHHHHHhhhhhccCccchh
Q 005381 134 KADSRN-------FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS------NYSAWHNRSLLLSNLLKRKVEGFVSKE 200 (699)
Q Consensus 134 ~~dprN-------~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~s------N~SAW~~R~~ll~~l~~~~~~~~~~~~ 200 (699)
++.++. ..++...+.+...+|.+ +++++++.++++.... -..++++.+.+....+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~---------- 237 (378)
T 3q15_A 169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHY-DKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD---------- 237 (378)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC----------
Confidence 976542 34777888888899998 6899999999986331 22567777777776644
Q ss_pred chHHHHHHHHHHHHH-----hCCCCchhHHHHHHHHcCcC
Q 005381 201 KVLPDEYEFVHQAIF-----TDPDDQSGWFYHLWLLDQTV 235 (699)
Q Consensus 201 ~~~~eeL~~~~~ai~-----~dP~d~SaW~Y~~~Ll~~~~ 235 (699)
++++++++.+|+. .+|....+++.+..+.....
T Consensus 238 --~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g 275 (378)
T 3q15_A 238 --DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG 275 (378)
T ss_dssp --HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCC
Confidence 7999999999999 78888778887777776544
No 330
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.19 E-value=0.0078 Score=66.41 Aligned_cols=162 Identities=10% Similarity=-0.040 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC--
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH-- 119 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~-- 119 (699)
++|+.++.+++.. .+..+++..+.+...... ....++++++.++++++.. .+..+|...++++....
T Consensus 276 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~-------g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~ 344 (490)
T 2xm6_A 276 LKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAE-------GVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSE 344 (490)
T ss_dssp HHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBT-------TBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC-------CCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCc
Confidence 6777777777654 456677777766654310 1124578999999999886 45688999999887651
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHh----cCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccC
Q 005381 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAAS----MNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (699)
Q Consensus 120 ~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~----l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~ 195 (699)
.+++++++++.++++. .+..+|.+-+.+... .+.+ ++.++++.++++.+ +..||.+.+.++..-. |
T Consensus 345 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~-~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~-----g 414 (490)
T 2xm6_A 345 EEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDE-QQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL-----G 414 (490)
T ss_dssp HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS-----S
T ss_pred ccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC-----C
Confidence 1578999999999987 578899999998877 4444 78999999998864 6788888888776410 0
Q ss_pred ccchhchHHHHHHHHHHHHHhCCC---CchhHHHH
Q 005381 196 FVSKEKVLPDEYEFVHQAIFTDPD---DQSGWFYH 227 (699)
Q Consensus 196 ~~~~~~~~~eeL~~~~~ai~~dP~---d~SaW~Y~ 227 (699)
....++++++.+.+|+..+|+ +..+++.+
T Consensus 415 ---~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l 446 (490)
T 2xm6_A 415 ---VERDYVQAWAWFDTASTNDMNLFGTENRNITE 446 (490)
T ss_dssp ---SCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHH
Confidence 123379999999999999954 77777654
No 331
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.18 E-value=0.00078 Score=69.56 Aligned_cols=132 Identities=11% Similarity=-0.082 Sum_probs=109.3
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC--hHH
Q 005381 30 QFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS--YGA 107 (699)
Q Consensus 30 ~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs--y~a 107 (699)
+.......|+| ++|.++++.++..+|+.. +.+.++.+..+.++ +.+++..++.+....+.. ..+
T Consensus 108 yA~~L~~~g~y-~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r------------~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 108 FAACEAAQGNY-ADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER------------WTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp HHHHHHHHTCH-HHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC------------HHHHHHHHTTGGGCSCHHHHHHH
T ss_pred HHHHHHHCCCH-HHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC------------HHHHHHHHHHhhccCCcccHHHH
Confidence 34445567788 899999999999999999 88889988877755 999999999887653222 348
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhC--CC-ChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHH
Q 005381 108 WHHRKWILSKGHSSIDNELRLLDKFQKAD--SR-NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAW 178 (699)
Q Consensus 108 W~hR~w~L~~~~~~~~~EL~~~~k~L~~d--pr-N~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW 178 (699)
+++.+.++.++ +.+++++..+++++.-. |. ...++.+++.++..+|+. ++..+.+.+++..+|. --+|
T Consensus 174 ~~~LG~al~~L-G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~-deA~~~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 174 GVAHGVAAANL-ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE-SAAVALLEWLQTTHPE-PKVA 244 (282)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCc-HHHH
Confidence 99999999988 69999999999998544 55 557999999999999998 6789999999999998 5544
No 332
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.17 E-value=0.0092 Score=62.74 Aligned_cols=155 Identities=12% Similarity=-0.087 Sum_probs=114.7
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCchH-----HHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHH---
Q 005381 36 HNHIYSKEAVELSTKLLETNPELYT-----AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGA--- 107 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~yt-----aWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~a--- 107 (699)
..|++ ++|+..+.++|...|.... +++..+.+....+. +++++..+++++...|+.-..
T Consensus 26 ~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 26 NDGNP-DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE------------LTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HTTCH-HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HCCCH-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCc------------HHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46666 7999999999999987643 45566666665544 889999999999876654332
Q ss_pred ---HHHHHHHHHhCCCChHHHHHHHHHHHHhCC--------CChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCc--
Q 005381 108 ---WHHRKWILSKGHSSIDNELRLLDKFQKADS--------RNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN-- 174 (699)
Q Consensus 108 ---W~hR~w~L~~~~~~~~~EL~~~~k~L~~dp--------rN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN-- 174 (699)
..+.+.+.... +.++++++.++++++..+ ....++...+.+....|.+ ++..+++.++++..+..
T Consensus 93 ~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 93 LWSLIQQSEILFAQ-GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL-DEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhccCc
Confidence 45567776665 699999999999998763 2334666678888888988 67889999999987642
Q ss_pred ---hHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhC
Q 005381 175 ---YSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTD 217 (699)
Q Consensus 175 ---~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~d 217 (699)
..++...+.+....+. ++++++.+.+++...
T Consensus 171 ~~~~~~~~~la~~~~~~g~------------~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGD------------LDNARSQLNRLENLL 204 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHH
Confidence 2455666666555433 789999999998763
No 333
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.15 E-value=0.0034 Score=56.22 Aligned_cols=123 Identities=8% Similarity=-0.067 Sum_probs=94.4
Q ss_pred HhcCCCCcHHHHHHHHHHHHhCCCch------HHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC---
Q 005381 34 NHHNHIYSKEAVELSTKLLETNPELY------TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS--- 104 (699)
Q Consensus 34 ~~~~~~~~~eaL~~~~~~L~~nP~~y------taWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs--- 104 (699)
....|.+ ++|+..+.+++.+.++.. .++...+.+....+. +++++..+++++...++.
T Consensus 19 ~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 19 HYLLGNF-RDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE------------FETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCH-HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHhCCc
Confidence 3455666 799999999999876643 477777887777754 899999999999876654
Q ss_pred ---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC------hhhhhHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 005381 105 ---YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN------FHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (699)
Q Consensus 105 ---y~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN------~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n 171 (699)
..++...+++.... +.+++++++++++++..++. ..++...+.+....|.+ ++.++++.++++..
T Consensus 86 ~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH-DQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHH
Confidence 56788888888877 69999999999999874332 34566667777777887 67888888888754
No 334
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.09 E-value=0.012 Score=62.73 Aligned_cols=157 Identities=8% Similarity=-0.031 Sum_probs=105.9
Q ss_pred HHHHHhCCCchHHHHH--HHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC---CCC--
Q 005381 49 TKLLETNPELYTAWNY--RKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG---HSS-- 121 (699)
Q Consensus 49 ~~~L~~nP~~ytaWn~--R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~---~~~-- 121 (699)
+.+...-|++..||-+ |++-+.... ++ ..+.+++.+++++++.+|.+..+|..+.|+.-.. .+.
T Consensus 184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~-----~~----~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~ 254 (372)
T 3ly7_A 184 ETLQKILPHRGALLTNFYQAHDYLLHG-----DD----KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDE 254 (372)
T ss_dssp HHHHHHSCSSGGGHHHHHHHHHHHHHC-----SH----HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHcC-----CH----HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCch
Confidence 3455667888888774 444333221 12 4579999999999999999999999887766421 011
Q ss_pred -----hHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCc
Q 005381 122 -----IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF 196 (699)
Q Consensus 122 -----~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~ 196 (699)
+.++++.. .++..+|.+..++.--+.+.-..+.+ ++.++..++++..||+ .-+|..++++....|.
T Consensus 255 ~~~~~l~~a~~a~-~a~~~~~~~a~~~~alal~~l~~gd~-d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~------ 325 (372)
T 3ly7_A 255 KQLAALNTEIDNI-VTLPELNNLSIIYQIKAVSALVKGKT-DESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM------ 325 (372)
T ss_dssp HHHHHHHHHHHHH-HTCGGGTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC------
T ss_pred hhHHHHHHHHHHH-HhcccCCcCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC------
Confidence 11222211 23355676666554444444444666 7899999999999974 6677778887776644
Q ss_pred cchhchHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005381 197 VSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (699)
Q Consensus 197 ~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~L 230 (699)
++++++.+.+|+.++|.+. .+++...|
T Consensus 326 ------~~eA~e~~~~AlrL~P~~~-t~~~~~~l 352 (372)
T 3ly7_A 326 ------NREAADAYLTAFNLRPGAN-TLYWIENG 352 (372)
T ss_dssp ------HHHHHHHHHHHHHHSCSHH-HHHHHHHS
T ss_pred ------HHHHHHHHHHHHhcCCCcC-hHHHHhCc
Confidence 7999999999999999986 45444433
No 335
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.07 E-value=0.0086 Score=69.51 Aligned_cols=166 Identities=6% Similarity=-0.146 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHH-HHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 005381 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEEL-RVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (699)
Q Consensus 43 eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL-~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~ 121 (699)
++..+|+++|..+|.++.+|..-...+...+. ..++. .++++++..+|++...|..-.-+.... +.
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~------------~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~-~~ 393 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNT------------DSTVITKYLKLGQQCIPNSAVLAFSLSEQYELN-TK 393 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC------------CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CC
Confidence 45678999999999999999987777766543 34676 899999999999999998887777766 57
Q ss_pred hHHHHHHHHHHHHhC-----------CC-----------ChhhhhHHHHHHHhcCCChHHHHHHHHHHHHh-ccCchHHH
Q 005381 122 IDNELRLLDKFQKAD-----------SR-----------NFHAWNYRRFVAASMNRSEEDELKYTEDMICN-NFSNYSAW 178 (699)
Q Consensus 122 ~~~EL~~~~k~L~~d-----------pr-----------N~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~-n~sN~SAW 178 (699)
++++-+.++++++.- |. +-.+|-.-.-+..+.+.. +.+.+.+.++++. .+.....|
T Consensus 394 ~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l-~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL-AASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHTGGGSCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhcCCCChHHH
Confidence 999999999999752 43 224677666555555544 6778888999887 55556777
Q ss_pred HHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhH-HHHHHHHcC
Q 005381 179 HNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGW-FYHLWLLDQ 233 (699)
Q Consensus 179 ~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW-~Y~~~Ll~~ 233 (699)
..-..+-...+. -++++...+..++...|++...| .|..++...
T Consensus 473 i~~A~lE~~~~~-----------d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 473 LENAYIEYHISK-----------DTKTACKVLELGLKYFATDGEYINKYLDFLIYV 517 (679)
T ss_dssp HHHHHHHHTTTS-----------CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-----------CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC
Confidence 655444333321 14788889999999999999999 687776643
No 336
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.02 E-value=0.007 Score=64.61 Aligned_cols=129 Identities=9% Similarity=0.026 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~ 121 (699)
.+|+.+++++++++|++..+|-.+..+...+...... +......+.+++... .++..+|....++.--..+.... ++
T Consensus 216 ~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~-~~~~~~~l~~a~~a~-~a~~~~~~~a~~~~alal~~l~~-gd 292 (372)
T 3ly7_A 216 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPL-DEKQLAALNTEIDNI-VTLPELNNLSIIYQIKAVSALVK-GK 292 (372)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHH-HTCGGGTTCHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCC-chhhHHHHHHHHHHH-HhcccCCcCHHHHHHHHHHHHhC-CC
Confidence 7999999999999999999999877765433221111 111112334444422 34466788777665444433322 68
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCch
Q 005381 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (699)
Q Consensus 122 ~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~ 175 (699)
+++++..+++++.++| +..+|...+++....|.+ ++.++.+.+++..+|+..
T Consensus 293 ~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~-~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 293 TDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMN-REAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcCCCcC
Confidence 9999999999999996 577888999999999998 789999999999999985
No 337
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.99 E-value=0.017 Score=63.44 Aligned_cols=168 Identities=10% Similarity=-0.083 Sum_probs=132.3
Q ss_pred cHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH--hC
Q 005381 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS--KG 118 (699)
Q Consensus 41 ~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~--~~ 118 (699)
.++|+..+.++...+|....+|+.-+.++..... ...++++++.+++++. |.+..+++..+.++. ..
T Consensus 195 ~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~--------~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~ 263 (452)
T 3e4b_A 195 QAELLKQMEAGVSRGTVTAQRVDSVARVLGDATL--------GTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPE 263 (452)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGG--------SSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------CCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCC
Confidence 3799999999999999999998888888754421 2245899999999998 999999999999843 22
Q ss_pred CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhc-C--CChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccC
Q 005381 119 HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM-N--RSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (699)
Q Consensus 119 ~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l-~--~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~ 195 (699)
..+++++++++.++++.+ +..|+..-+.+...- + ...++.++++.+++ +.+..|+++.+.++.. +. +
T Consensus 264 ~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~-G~----g 333 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRAAD--QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR-GY----L 333 (452)
T ss_dssp GCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT-TT----T
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC-CC----C
Confidence 368999999999998655 889999999888732 1 12378999999998 8899999999977654 11 1
Q ss_pred ccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCc
Q 005381 196 FVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (699)
Q Consensus 196 ~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~ 234 (699)
....++++++++.+|+. +++..+.+.+..++...
T Consensus 334 ---~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G 367 (452)
T 3e4b_A 334 ---GKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQG 367 (452)
T ss_dssp ---SSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSC
T ss_pred ---CCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhC
Confidence 12346899999999986 67888888888887653
No 338
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.98 E-value=0.011 Score=64.93 Aligned_cols=162 Identities=12% Similarity=0.055 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC---C
Q 005381 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG---H 119 (699)
Q Consensus 43 eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~---~ 119 (699)
++..++..+...+|+ +++..+.++...+. .+.+++++.++.++...+|....+|+.-+.++... .
T Consensus 163 ~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~---------~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 163 DVERICKAALNTTDI---CYVELATVYQKKQQ---------PEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp HHHHHHHHHTTTCTT---HHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSS
T ss_pred HHHHHHHHHHcCCHH---HHHHHHHHHHHcCC---------cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 345556666666666 77888877776542 24689999999999999999999998888888643 1
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHH-H--HhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCc
Q 005381 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFV-A--ASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF 196 (699)
Q Consensus 120 ~~~~~EL~~~~k~L~~dprN~haW~yR~~v-l--~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~ 196 (699)
.+++++++++.++. |.+..|+...+.+ . ...+.+ ++.++++.++++.+ +..|+++.+.++. .+. +
T Consensus 231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~-~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~----g- 298 (452)
T 3e4b_A 231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDV-EQMMKYLDNGRAAD--QPRAELLLGKLYY-EGK----W- 298 (452)
T ss_dssp CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCH-HHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCS----S-
T ss_pred CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCC----C-
Confidence 47899999999988 8999999999988 4 334444 78999999998654 8899999998776 221 1
Q ss_pred cchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 197 VSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 197 ~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
....++++++++.+|+ |++..+++.+..++..
T Consensus 299 --~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 299 --VPADAKAAEAHFEKAV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp --SCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred --CCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence 1224799999999999 9999999999988865
No 339
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.87 E-value=0.038 Score=60.84 Aligned_cols=166 Identities=10% Similarity=-0.049 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC---
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG--- 118 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~--- 118 (699)
++|+.++.+++.. .+..++...+.+...... ...++++++.++++++.. .+..+++..+.+....
T Consensus 240 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~--------~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 240 TQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLA--------GAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp HHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTT--------SSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTT
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC
Confidence 4555555555543 334455555554443110 124578888888888765 5677888888888764
Q ss_pred -CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCC--hHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccC
Q 005381 119 -HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS--EEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (699)
Q Consensus 119 -~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~--~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~ 195 (699)
..++++++.++.++++.+ +..||...+.+....+.. .++.++++.++++. .+..||.+.+.++..-. +
T Consensus 308 ~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~-----g 378 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGK-----G 378 (490)
T ss_dssp BCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS-----S
T ss_pred CcCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCC-----C
Confidence 147889999999988764 567888888887765521 26788888998887 57788988888765410 0
Q ss_pred ccchhchHHHHHHHHHHHHHhCCCCchhHHHHHHHHcC
Q 005381 196 FVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (699)
Q Consensus 196 ~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~ 233 (699)
..+.++++++++.+|+.. ++..+|+.+.+++..
T Consensus 379 ---~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 379 ---VKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYY 411 (490)
T ss_dssp ---SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence 123479999999999985 578899998888865
No 340
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.82 E-value=0.038 Score=67.91 Aligned_cols=170 Identities=8% Similarity=0.013 Sum_probs=117.0
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC-------
Q 005381 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS------- 104 (699)
Q Consensus 32 ~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs------- 104 (699)
.+....|.+ +||++.|.++ +++.+|.....+..++++ ++++++++..+.+..+.+
T Consensus 1113 KAql~~G~~-kEAIdsYiKA-----dD~say~eVa~~~~~lGk------------yEEAIeyL~mArk~~~e~~Idt~La 1174 (1630)
T 1xi4_A 1113 KAQLQKGMV-KEAIDSYIKA-----DDPSSYMEVVQAANTSGN------------WEELVKYLQMARKKARESYVETELI 1174 (1630)
T ss_pred HHHHhCCCH-HHHHHHHHhc-----CChHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhcccccccHHHH
Confidence 444456666 7999999664 888888888888888865 777777776666555332
Q ss_pred --------------------hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHH
Q 005381 105 --------------------YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (699)
Q Consensus 105 --------------------y~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~ 164 (699)
...|..-+-.+... +.|++|+.+|.++ ..|...+.++.++|.+ +++++++
T Consensus 1175 faYAKl~rleele~fI~~~n~ad~~~iGd~le~e-g~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~-q~AIEaa 1244 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFINGPNNAHIQQVGDRCYDE-KMYDAAKLLYNNV--------SNFGRLASTLVHLGEY-QAAVDGA 1244 (1630)
T ss_pred HHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhc-CCHHHHHHHHHhh--------hHHHHHHHHHHHhCCH-HHHHHHH
Confidence 23444444444444 5788888888886 4777888888888887 6788888
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhh-----hhh------cc-------CccchhchHHHHHHHHHHHHHhCCCCchhHHH
Q 005381 165 EDMICNNFSNYSAWHNRSLLLSNLL-----KRK------VE-------GFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFY 226 (699)
Q Consensus 165 ~~~I~~n~sN~SAW~~R~~ll~~l~-----~~~------~~-------~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y 226 (699)
.++ .|..+|..-.+..-..+ ... .. ..-...+.++++|.++.+++.++|.+...|..
T Consensus 1245 rKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1245 RKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred HHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 887 66688875554442110 000 00 01123356899999999999999999999988
Q ss_pred HHHHHcCc
Q 005381 227 HLWLLDQT 234 (699)
Q Consensus 227 ~~~Ll~~~ 234 (699)
+.=|+.+.
T Consensus 1320 LaiLyaKy 1327 (1630)
T 1xi4_A 1320 LAILYSKF 1327 (1630)
T ss_pred HHHHHHhC
Confidence 88777653
No 341
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.67 E-value=0.0087 Score=56.46 Aligned_cols=127 Identities=7% Similarity=-0.172 Sum_probs=96.4
Q ss_pred HHHhcCCCCcHHHHHHHHHHHH------hCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHh---CC
Q 005381 32 LHNHHNHIYSKEAVELSTKLLE------TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ---NF 102 (699)
Q Consensus 32 ~~~~~~~~~~~eaL~~~~~~L~------~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~---nP 102 (699)
......|++ ++|+..+.+++. ..|....+|+..+.+....++ +++++..+++++.. .+
T Consensus 34 ~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~ 100 (203)
T 3gw4_A 34 YVYAFMDRF-DEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN------------WDAARRCFLEERELLASLP 100 (203)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhCcH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHcC
Confidence 344556777 799999999999 566667888888888887765 88999999999987 44
Q ss_pred ----CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh------hhhhHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 005381 103 ----KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF------HAWNYRRFVAASMNRSEEDELKYTEDMICNNF 172 (699)
Q Consensus 103 ----Ksy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~------haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~ 172 (699)
....++...+++.... +.+++++.++++++++.++.- .++...+.+....|.+ ++.++++.++++.-.
T Consensus 101 ~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 101 EDPLAASANAYEVATVALHF-GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL-LEAQQHWLRARDIFA 178 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH-HHHHHHHHHHHHHHH
Confidence 2345677788888776 689999999999997643222 2346677778888887 678888888888644
Q ss_pred C
Q 005381 173 S 173 (699)
Q Consensus 173 s 173 (699)
.
T Consensus 179 ~ 179 (203)
T 3gw4_A 179 E 179 (203)
T ss_dssp H
T ss_pred H
Confidence 3
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.66 E-value=0.037 Score=68.05 Aligned_cols=140 Identities=13% Similarity=0.022 Sum_probs=89.8
Q ss_pred CCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005381 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA 135 (699)
Q Consensus 56 P~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~ 135 (699)
.+...+|...+.+....++ ++++++.|.++ +++.+|...+.++.+. +.++++++++..+.+.
T Consensus 1102 vn~p~vWsqLAKAql~~G~------------~kEAIdsYiKA-----dD~say~eVa~~~~~l-GkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGM------------VKEAIDSYIKA-----DDPSSYMEVVQAANTS-GNWEELVKYLQMARKK 1163 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCC------------HHHHHHHHHhc-----CChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Confidence 4667888888888887765 88999998775 8888888888888887 6889999999888877
Q ss_pred CCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccC-------c-------cchhc
Q 005381 136 DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG-------F-------VSKEK 201 (699)
Q Consensus 136 dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~-------~-------~~~~~ 201 (699)
++.. .+=.+.++++.+++.+ ++++.+ | +..|...|...+..+...+....+. . -...+
T Consensus 1164 ~~e~-~Idt~LafaYAKl~rl--eele~f---I--~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1164 ARES-YVETELIFALAKTNRL--AELEEF---I--NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLG 1235 (1630)
T ss_pred cccc-cccHHHHHHHHhhcCH--HHHHHH---H--hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhC
Confidence 7332 2223466666666654 234433 1 2334455555555444433211000 0 01113
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHH
Q 005381 202 VLPDEYEFVHQAIFTDPDDQSGWFY 226 (699)
Q Consensus 202 ~~~eeL~~~~~ai~~dP~d~SaW~Y 226 (699)
.+++|++++.+| ++..+|.-
T Consensus 1236 e~q~AIEaarKA-----~n~~aWke 1255 (1630)
T 1xi4_A 1236 EYQAAVDGARKA-----NSTRTWKE 1255 (1630)
T ss_pred CHHHHHHHHHHh-----CCHHHHHH
Confidence 378899999888 56688873
No 343
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.60 E-value=0.00027 Score=75.92 Aligned_cols=131 Identities=13% Similarity=0.008 Sum_probs=69.5
Q ss_pred EEccCCCCCcccCCCCCcccCEEEccCCCCCCCc--CC--ccccccceeeccc--CCCCCCCCC----ccc--ccccccc
Q 005381 538 LQLKNLSLSRLGSFDKLLWVQMLDLSHNELRSIE--GL--EALQLLSCLNLSN--NILGSFTAL----EPI--RQLKSLR 605 (699)
Q Consensus 538 L~Ls~n~l~~l~~l~~L~~L~~LdLS~N~L~~l~--~l--~~L~~L~~L~Ls~--N~l~~l~~~----~~l--~~l~~L~ 605 (699)
|.|+++.-..++.+ .+++|+.|+|+.+.++.-. .+ ..+++|+.|+|+. |...+-... ..+ ..+++|+
T Consensus 177 L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr 255 (362)
T 2ra8_A 177 LKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLK 255 (362)
T ss_dssp EEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCC
T ss_pred EEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcC
Confidence 77777632233343 3788999999888774321 23 3678888888853 221111000 112 2468899
Q ss_pred ccccccccCCCCCcccccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCC
Q 005381 606 ALNISYNEIGAHSIDTTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIV 675 (699)
Q Consensus 606 ~L~Ls~N~I~~lp~~~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~ 675 (699)
.|+|++|.++............++-+..++++.|.+... ....++..+..+ +|+.|+|++|.|.
T Consensus 256 ~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~------G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 256 WLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE------GARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp EEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH------HHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred EEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH------HHHHHHhhcccCCcceEEECCCCcCC
Confidence 999988887642100000011223333345555554221 111223333456 7888999888884
No 344
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.22 E-value=0.00092 Score=64.07 Aligned_cols=100 Identities=20% Similarity=0.225 Sum_probs=65.4
Q ss_pred cccCEEEccCCCCCC--CcCCccccccceeecccCC-CCCCCCCcccccc----cccccccccccc-CCCCCcccccccC
Q 005381 555 LWVQMLDLSHNELRS--IEGLEALQLLSCLNLSNNI-LGSFTALEPIRQL----KSLRALNISYNE-IGAHSIDTTKYLC 626 (699)
Q Consensus 555 ~~L~~LdLS~N~L~~--l~~l~~L~~L~~L~Ls~N~-l~~l~~~~~l~~l----~~L~~L~Ls~N~-I~~lp~~~~~~l~ 626 (699)
..|+.||||++.|+. +..+..+++|+.|+|+++. |+.. .+..++.+ ++|+.|+|+++. |+.-.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-------- 131 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKG-------- 131 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHH--------
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHH--------
Confidence 468899999888754 3337788899999999885 6542 22334443 478999998863 65531
Q ss_pred CCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC-CCccc-hHHHhhcCCcccc
Q 005381 627 SSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI-VNEKF-KSFLIKVLPGLKW 692 (699)
Q Consensus 627 ~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l-~~~~~-~~~~~~~l~~L~~ 692 (699)
...+.++ +|+.|+|++.+- ..... ...+...+|+++.
T Consensus 132 -----------------------------l~~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 132 -----------------------------IIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp -----------------------------HHHGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred -----------------------------HHHHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 1134456 899999999864 43322 3344567888763
No 345
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.09 E-value=0.0022 Score=68.76 Aligned_cols=136 Identities=18% Similarity=0.182 Sum_probs=73.3
Q ss_pred CCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCcccc--cccccccccccc--ccC-CCCCcccc-c
Q 005381 550 SFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIR--QLKSLRALNISY--NEI-GAHSIDTT-K 623 (699)
Q Consensus 550 ~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~--~l~~L~~L~Ls~--N~I-~~lp~~~~-~ 623 (699)
.+..+++|+.|+|++|.--.++++. +++|+.|+|..+.++.- ....+. .+++|+.|+|+. |.. +...+... .
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~-~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDS-VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHH-HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChH-HHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 3466799999999998422344443 88999999999887542 112232 689999999863 332 22111000 1
Q ss_pred ccC--CCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHH--hhcCCcccccc
Q 005381 624 YLC--SSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFL--IKVLPGLKWLD 694 (699)
Q Consensus 624 ~l~--~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~--~~~l~~L~~LD 694 (699)
.+. ..+.+..+.+.+|.+.. ...........+ +|+.|+|+.|.|......... +..+++|+.||
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~-------~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~ 313 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQN-------VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHH-------HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEE
T ss_pred HHhcCCCCCcCEEeCCCCCCch-------HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEE
Confidence 111 12223333443333311 000111111345 899999999999432221111 23567777776
No 346
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.98 E-value=0.11 Score=54.20 Aligned_cols=121 Identities=12% Similarity=-0.035 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChh------hhhHHHHHHHhcC
Q 005381 86 ILDEELRVVESALRQNFKSYG-----AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFH------AWNYRRFVAASMN 154 (699)
Q Consensus 86 ~~~eEL~~~~~~L~~nPKsy~-----aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~h------aW~yR~~vl~~l~ 154 (699)
.+++++..+++++...|.... ++...+.+.... +.+++++..+.+++.+.++.-. +..+.+.+....|
T Consensus 29 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G 107 (373)
T 1hz4_A 29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK-GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG 107 (373)
T ss_dssp CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCC
Confidence 389999999999998887643 455666666655 6899999999999987765432 2456778888888
Q ss_pred CChHHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC
Q 005381 155 RSEEDELKYTEDMICNNF--------SNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220 (699)
Q Consensus 155 ~~~e~EL~~~~~~I~~n~--------sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d 220 (699)
.+ ++.++++.++++..+ ....++...+.++...+. ++++++.+.+++...|..
T Consensus 108 ~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 108 FL-QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR------------LDEAEASARSGIEVLSSY 168 (373)
T ss_dssp CH-HHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHTTTS
T ss_pred CH-HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC------------HHHHHHHHHHHHHHhhcc
Confidence 88 678899999998753 234456666766665543 799999999999988864
No 347
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.97 E-value=0.075 Score=49.38 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=63.7
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhC-C-CChhhhhHHHHHHHhcCCChHHHHHHHHH
Q 005381 91 LRVVESALRQNFKSYGAWHHRKWILSKGH--SSIDNELRLLDKFQKAD-S-RNFHAWNYRRFVAASMNRSEEDELKYTED 166 (699)
Q Consensus 91 L~~~~~~L~~nPKsy~aW~hR~w~L~~~~--~~~~~EL~~~~k~L~~d-p-rN~haW~yR~~vl~~l~~~~e~EL~~~~~ 166 (699)
-+-|...+..+|.+.++...=+|+|-+.. ...++.+.+++.+++.+ | ++-.|++|.+...-+++.| +++++|+++
T Consensus 18 ~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y-~~A~~y~~~ 96 (152)
T 1pc2_A 18 EKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY-EKALKYVRG 96 (152)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH-HHHHHHHHH
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH-HHHHHHHHH
Confidence 34445555566667777777777776642 13456777777777766 5 5566777777666666666 567777777
Q ss_pred HHHhccCchHHHHHHHHHHHHhhh
Q 005381 167 MICNNFSNYSAWHNRSLLLSNLLK 190 (699)
Q Consensus 167 ~I~~n~sN~SAW~~R~~ll~~l~~ 190 (699)
+++++|.|.-|-.=+..+-..+.+
T Consensus 97 lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 97 LLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHH
Confidence 777777777776666665555544
No 348
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.95 E-value=0.028 Score=47.56 Aligned_cols=74 Identities=11% Similarity=-0.048 Sum_probs=46.9
Q ss_pred CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 005381 55 NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQK 134 (699)
Q Consensus 55 nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~ 134 (699)
+|++..+|..++.++..... .....++...++++|..+|++..++...+.+..+. ++|++++..+.++++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~---------~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~-g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHK---------QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFIS-FRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTT---------TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhcC---------CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Confidence 56666777766666643221 01235666677777777777777777776666655 467777777777777
Q ss_pred hCCC
Q 005381 135 ADSR 138 (699)
Q Consensus 135 ~dpr 138 (699)
.+|.
T Consensus 72 ~~p~ 75 (93)
T 3bee_A 72 SNDP 75 (93)
T ss_dssp CCCT
T ss_pred hCCC
Confidence 7666
No 349
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.88 E-value=0.008 Score=54.46 Aligned_cols=51 Identities=24% Similarity=0.195 Sum_probs=36.6
Q ss_pred EEccCCCCC--cccCCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCC
Q 005381 538 LQLKNLSLS--RLGSFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNIL 589 (699)
Q Consensus 538 L~Ls~n~l~--~l~~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l 589 (699)
++.+++.++ .+|.- --.+|+.|+|++|+|+.++. |..+++|+.|+|++|.+
T Consensus 13 v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 13 VDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 777777777 66621 12367788888888877776 77777888888888765
No 350
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.72 E-value=0.094 Score=48.71 Aligned_cols=66 Identities=9% Similarity=0.068 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHH
Q 005381 85 SILDEELRVVESALRQN-F-KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAA 151 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~n-P-Ksy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~ 151 (699)
..+++.+..++.+++.+ | +.-.++++.+-...++ +.|++++.+++++|+++|.|-.|-.-+.-+-.
T Consensus 49 ~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl-~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 49 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL-KEYEKALKYVRGLLQTEPQNNQAKELERLIDK 116 (152)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 46789999999999999 7 6789999998888877 69999999999999999999999776655443
No 351
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.69 E-value=0.014 Score=52.74 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=46.7
Q ss_pred CEEEccCCCCC--CCcC-CccccccceeecccCCCCCCCCCccccccccccccccccccCC
Q 005381 558 QMLDLSHNELR--SIEG-LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIG 615 (699)
Q Consensus 558 ~~LdLS~N~L~--~l~~-l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~ 615 (699)
..++.+++.|+ .+|. +. .+|+.|+|++|+|+.++ ...|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALP-PGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccC-hhhhhhccccCEEEecCCCee
Confidence 47899999998 8886 32 36899999999999984 367888999999999999884
No 352
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.68 E-value=0.07 Score=45.08 Aligned_cols=63 Identities=16% Similarity=0.049 Sum_probs=55.1
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCC
Q 005381 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK 103 (699)
Q Consensus 29 ~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPK 103 (699)
+..+-....+..+++|..++.++|..+|++..++...+.+....++ |++++..+++++..+|.
T Consensus 13 a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~------------y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 13 ATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR------------FQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHTCCCT
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCC
Confidence 3334445667778999999999999999999999999998888765 99999999999999999
No 353
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.63 E-value=0.26 Score=50.66 Aligned_cols=126 Identities=6% Similarity=-0.043 Sum_probs=97.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhC----CC
Q 005381 47 LSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK--SYGAWHHRKWILSKG----HS 120 (699)
Q Consensus 47 ~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPK--sy~aW~hR~w~L~~~----~~ 120 (699)
+-..+-..+|++..++.+.+.+..........++.. -....++....+++++++|+ +-.+|...+-+..+. .+
T Consensus 140 ~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~A-l~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG 218 (301)
T 3u64_A 140 LHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSAL-PDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG 218 (301)
T ss_dssp HHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCC-HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHH-HHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC
Confidence 344566789999999999998887654312233322 35578899999999999999 555999999998875 25
Q ss_pred ChHHHHHHHHHHHHhCCC-ChhhhhHHHHHHHh-cCCChHHHHHHHHHHHHhccCc
Q 005381 121 SIDNELRLLDKFQKADSR-NFHAWNYRRFVAAS-MNRSEEDELKYTEDMICNNFSN 174 (699)
Q Consensus 121 ~~~~EL~~~~k~L~~dpr-N~haW~yR~~vl~~-l~~~~e~EL~~~~~~I~~n~sN 174 (699)
..+++-++++++|+++|. |..++.+-+..+.. .+.+ ++..++.++++..+|+-
T Consensus 219 d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~-~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 219 GMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR-AGFDEALDRALAIDPES 273 (301)
T ss_dssp CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH-HHHHHHHHHHHHCCGGG
T ss_pred CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH-HHHHHHHHHHHcCCCCC
Confidence 789999999999999996 48887777666655 4665 66788999999988874
No 354
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.53 E-value=0.31 Score=56.44 Aligned_cols=160 Identities=6% Similarity=-0.077 Sum_probs=114.4
Q ss_pred HHHH-HHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHh-----------CCC------
Q 005381 42 KEAV-ELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ-----------NFK------ 103 (699)
Q Consensus 42 ~eaL-~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~-----------nPK------ 103 (699)
++|. +++.+++..+|+....|.....+....+. ++++-.++++++.. .|.
T Consensus 360 ~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~------------~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~ 427 (679)
T 4e6h_A 360 STVITKYLKLGQQCIPNSAVLAFSLSEQYELNTK------------IPEIETTILSCIDRIHLDLAALMEDDPTNESAIN 427 (679)
T ss_dssp TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhh
Confidence 5787 99999999999999999877777666643 45555556666543 353
Q ss_pred -----ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-CCCChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHH
Q 005381 104 -----SYGAWHHRKWILSKGHSSIDNELRLLDKFQKA-DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSA 177 (699)
Q Consensus 104 -----sy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~-dprN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SA 177 (699)
...+|..-.-+..+. +..+++-..+.++++. .+...+.|..-+.+-.+.+.-.+.+.+.++.+++..|.+...
T Consensus 428 ~~~~~~~~vWi~y~~~erR~-~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~ 506 (679)
T 4e6h_A 428 QLKSKLTYVYCVYMNTMKRI-QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEY 506 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHH
T ss_pred hhccchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHH
Confidence 345788877666655 4678999999999998 556678887666555555542378899999999999999998
Q ss_pred HHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCC---CchhHHH
Q 005381 178 WHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD---DQSGWFY 226 (699)
Q Consensus 178 W~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~---d~SaW~Y 226 (699)
|.--..++...+. .+.+-+.+.+|+...|+ ....|.+
T Consensus 507 w~~y~~fe~~~~~------------~~~AR~lferal~~~~~~~~~~~lw~~ 546 (679)
T 4e6h_A 507 INKYLDFLIYVNE------------ESQVKSLFESSIDKISDSHLLKMIFQK 546 (679)
T ss_dssp HHHHHHHHHHHTC------------HHHHHHHHHHHTTTSSSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCC------------HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8333333333322 57788899999988883 4456654
No 355
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.33 E-value=0.0038 Score=59.74 Aligned_cols=78 Identities=13% Similarity=0.262 Sum_probs=59.6
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCC-CCC--CcCCccc----cccceeecccCC-CCCCCCCcccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNE-LRS--IEGLEAL----QLLSCLNLSNNI-LGSFTALEPIRQLKSLRAL 607 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~-L~~--l~~l~~L----~~L~~L~Ls~N~-l~~l~~~~~l~~l~~L~~L 607 (699)
|+++++.++..+ .+..+++|+.|+|+++. |+. +..+..+ ++|+.|+|+++. |+.- ....+..+++|+.|
T Consensus 66 LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~~~~~L~~L 144 (176)
T 3e4g_A 66 IDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALHHFRNLKYL 144 (176)
T ss_dssp EEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGGGCTTCCEE
T ss_pred EeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHhcCCCCCEE
Confidence 999999998654 78899999999999985 544 2225554 479999999985 7653 33567789999999
Q ss_pred cccccc-CCC
Q 005381 608 NISYNE-IGA 616 (699)
Q Consensus 608 ~Ls~N~-I~~ 616 (699)
+|++.. |+.
T Consensus 145 ~L~~c~~Itd 154 (176)
T 3e4g_A 145 FLSDLPGVKE 154 (176)
T ss_dssp EEESCTTCCC
T ss_pred ECCCCCCCCc
Confidence 998764 444
No 356
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.2 Score=53.20 Aligned_cols=158 Identities=11% Similarity=0.028 Sum_probs=107.0
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCCchH-----------------HHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHH
Q 005381 35 HHNHIYSKEAVELSTKLLETNPELYT-----------------AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESA 97 (699)
Q Consensus 35 ~~~~~~~~eaL~~~~~~L~~nP~~yt-----------------aWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~ 97 (699)
...|+| ++|++.+.+++...|+... +....+.+....+. ++++++.+..+
T Consensus 15 ~~~~~y-~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~------------~~~a~~~~~~~ 81 (434)
T 4b4t_Q 15 VNEKQY-NEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA------------KDKLREFIPHS 81 (434)
T ss_dssp HHHTCH-HHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHT
T ss_pred HHCCCH-HHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC------------HHHHHHHHHHH
Confidence 345777 7899999999998888653 34555666665544 88999999999
Q ss_pred HHhCCCChHHHHHHHH--HHH---hCCCChHHHHHHHHHHHHhCCCC------hhhhhHHHHHHHhcCCChHHHHHHHHH
Q 005381 98 LRQNFKSYGAWHHRKW--ILS---KGHSSIDNELRLLDKFQKADSRN------FHAWNYRRFVAASMNRSEEDELKYTED 166 (699)
Q Consensus 98 L~~nPKsy~aW~hR~w--~L~---~~~~~~~~EL~~~~k~L~~dprN------~haW~yR~~vl~~l~~~~e~EL~~~~~ 166 (699)
+...++...+-..+.- .+. ...+.++++++++.+++...+.. ..++...+-+....|.+ .++++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~l~~ 160 (434)
T 4b4t_Q 82 TEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQY-KDSLALIND 160 (434)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCH-HHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccCh-HHHHHHHHH
Confidence 9876665544322211 111 22367899999999998765433 23555667777777888 678888888
Q ss_pred HHHh------ccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCC
Q 005381 167 MICN------NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (699)
Q Consensus 167 ~I~~------n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP 218 (699)
++.. .+....++...+.+...++. +.++...+++++.+.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKLRN------------LAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhCc------------HHHHHHHHHHHHHHhh
Confidence 7765 22333566666666665533 7888888888887644
No 357
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.14 E-value=0.18 Score=52.51 Aligned_cols=153 Identities=10% Similarity=0.006 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhCCCC
Q 005381 44 AVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF--KSYGAWHHRKWILSKGHSS 121 (699)
Q Consensus 44 aL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nP--Ksy~aW~hR~w~L~~~~~~ 121 (699)
++..+++++...+....+...-+.++...+. ++++++++.+.|..+| .+..+..-..-++-+. ++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~------------~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~-~r 151 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGD------------LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN-NN 151 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC------------HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC-CC
Confidence 4455566666555667777777777777654 9999999999999997 8888888888888777 69
Q ss_pred hHHHHHHHHHHHHhCCC----ChhhhhH--HHHHHHhcC--CChHHHHHHHHHHHHhccCchH--HHHHHHHHHHHhhhh
Q 005381 122 IDNELRLLDKFQKADSR----NFHAWNY--RRFVAASMN--RSEEDELKYTEDMICNNFSNYS--AWHNRSLLLSNLLKR 191 (699)
Q Consensus 122 ~~~EL~~~~k~L~~dpr----N~haW~y--R~~vl~~l~--~~~e~EL~~~~~~I~~n~sN~S--AW~~R~~ll~~l~~~ 191 (699)
.+.+.+.++++.+.+|. +-....+ -+|+--..| .+ ++.+.+++++.+..|...+ .... +..+++
T Consensus 152 ~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~-q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g-- 225 (310)
T 3mv2_B 152 VSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETA-TSNFYYYEELSQTFPTWKTQLGLLN---LHLQQR-- 225 (310)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTT-THHHHHHHHHHTTSCSHHHHHHHHH---HHHHHT--
T ss_pred HHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccH-HHHHHHHHHHHHhCCCcccHHHHHH---HHHHcC--
Confidence 99999999999999983 2222222 356544444 55 6789999999888876222 2222 333332
Q ss_pred hccCccchhchHHHHHHHHHHHHHh----------CCCCchhHH
Q 005381 192 KVEGFVSKEKVLPDEYEFVHQAIFT----------DPDDQSGWF 225 (699)
Q Consensus 192 ~~~~~~~~~~~~~eeL~~~~~ai~~----------dP~d~SaW~ 225 (699)
.++++-+.++.++.. +|+|..+-.
T Consensus 226 ----------~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 226 ----------NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp ----------CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 367777777766666 588887763
No 358
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.95 E-value=0.44 Score=42.76 Aligned_cols=116 Identities=9% Similarity=-0.076 Sum_probs=88.6
Q ss_pred hhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHh----cCCChH
Q 005381 83 LKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAAS----MNRSEE 158 (699)
Q Consensus 83 ~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~----l~~~~e 158 (699)
+.+++++++.+++++...+..... -+.+.... ...+++++++.++.+. .+..|+..-+.+... .+.+ +
T Consensus 7 ~~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g-~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~-~ 78 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELNEMFGC----LSLVSNSQ-INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDL-R 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTT-SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCH-H
T ss_pred CccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcC-CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccH-H
Confidence 457799999999999988744443 55555544 4678899999999987 678899999988876 3333 7
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHh
Q 005381 159 DELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFT 216 (699)
Q Consensus 159 ~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~ 216 (699)
+.++++.++++. .+..|.++.+.+...= .+ ....++++++++.+|+..
T Consensus 79 ~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G-----~g---~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 79 KAAQYYSKACGL--NDQDGCLILGYKQYAG-----KG---VVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHT-----SS---SCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHCC-----CC---CCcCHHHHHHHHHHHHHC
Confidence 899999999987 6788888888776541 01 123479999999999987
No 359
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=94.47 E-value=0.57 Score=48.72 Aligned_cols=158 Identities=6% Similarity=-0.060 Sum_probs=114.6
Q ss_pred CCCCcHHHHHHHHHHHHhCC--CchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCC------CChHHH
Q 005381 37 NHIYSKEAVELSTKLLETNP--ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF------KSYGAW 108 (699)
Q Consensus 37 ~~~~~~eaL~~~~~~L~~nP--~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nP------Ksy~aW 108 (699)
.|.+ ++||+++.+.|..+| .+..+.-..-.++..+++ .+.+.+.++++...+| ......
T Consensus 113 ~g~~-eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r------------~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 113 LGDL-DKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN------------VSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HTCH-HHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCH-HHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhcCccccccchHHHHH
Confidence 4666 899999999999997 888888888888888866 7899999999999999 344444
Q ss_pred HHHHHHHHh-CCCChHHHHHHHHHHHHhCCC--Ch-hhhhHHHHHHHhcCCChHHHHHHHHHHHHh----------ccCc
Q 005381 109 HHRKWILSK-GHSSIDNELRLLDKFQKADSR--NF-HAWNYRRFVAASMNRSEEDELKYTEDMICN----------NFSN 174 (699)
Q Consensus 109 ~hR~w~L~~-~~~~~~~EL~~~~k~L~~dpr--N~-haW~yR~~vl~~l~~~~e~EL~~~~~~I~~----------n~sN 174 (699)
---.|+--. ....+++++.+++.+.+..|. .. .-|+ +..++|.++ ++-+..+.+++. +|.|
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln----~~~~~g~~~-eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN----LHLQQRNIA-EAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH----HHHHHTCHH-HHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH----HHHHcCCHH-HHHHHHHHHHHhcccccccccCCCCC
Confidence 444666543 334789999999999888875 22 2233 566778884 444555666665 5888
Q ss_pred hHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCchhHHH
Q 005381 175 YSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFY 226 (699)
Q Consensus 175 ~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y 226 (699)
..+..+...+-..+++ ++.+++.++...+|+|.-.=-|
T Consensus 255 ~~~LaN~i~l~~~lgk--------------~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--------------DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHHHHHHHHHHTTC--------------TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCh--------------HHHHHHHHHHHhCCCChHHHHH
Confidence 8887777655554421 4557788899999999866544
No 360
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=93.97 E-value=0.29 Score=53.44 Aligned_cols=101 Identities=11% Similarity=0.033 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHH
Q 005381 23 KLRVLQSQFLHNHHNHIYSKEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVV 94 (699)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~--------nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~ 94 (699)
.-+..+..+......|.| ++|+.++.++|.+ +|+-.+..+.-+.+....++ |++++.++
T Consensus 297 ~~~~~le~~~~~~~~g~~-~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~------------~~eA~~~~ 363 (433)
T 3qww_A 297 YARNVIEEFRRAKHYKSP-SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD------------WEGALKYG 363 (433)
T ss_dssp HHHHHHHHHHHHTTTSCH-HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC------------HHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCH-HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC------------HHHHHHHH
Confidence 344555666666677777 7999999999996 34445667777777777765 88888888
Q ss_pred HHHHHh--------CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 005381 95 ESALRQ--------NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADS 137 (699)
Q Consensus 95 ~~~L~~--------nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dp 137 (699)
+++|.+ +|.-...++.-+.++... +.+++++.++++++++..
T Consensus 364 ~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~q-g~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 364 QKIIKPYSKHYPVYSLNVASMWLKLGRLYMGL-ENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHH
Confidence 888853 566666777778888766 699999999999998753
No 361
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.77 E-value=0.25 Score=50.73 Aligned_cols=91 Identities=14% Similarity=0.059 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhCCCc--hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHhC
Q 005381 42 KEAVELSTKLLETNPEL--YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK-SYGAWHHRKWILSKG 118 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~--ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPK-sy~aW~hR~w~L~~~ 118 (699)
.+|....+++|+++|+. -.+|.+.+.+.... |+..-...+++-..++++|+++|. +..+++.-+..+...
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~v-------Pp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAA-------PESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHS-------CTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhC-------CCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Confidence 58888999999999994 56999999888765 222224578999999999999996 599999999888764
Q ss_pred CCChHHHHHHHHHHHHhCCCC
Q 005381 119 HSSIDNELRLLDKFQKADSRN 139 (699)
Q Consensus 119 ~~~~~~EL~~~~k~L~~dprN 139 (699)
.++++++..++++++..+|+-
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGGG
T ss_pred cCCHHHHHHHHHHHHcCCCCC
Confidence 468899999999999999884
No 362
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=93.74 E-value=0.075 Score=58.12 Aligned_cols=128 Identities=9% Similarity=0.087 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHHHHHHH
Q 005381 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (699)
Q Consensus 87 ~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL~~~~~ 166 (699)
|+++++.+.++ .+..+|.--..+.-.. +.++.+..+... +..+|.+... -.-+.++.|.+ ++.+.+.++
T Consensus 164 yq~AVea~~KA-----~~~~~Wk~v~~aCv~~-~ef~lA~~~~l~-L~~~ad~l~~---lv~~Yek~G~~-eEai~lLe~ 232 (449)
T 1b89_A 164 YQAAVDGARKA-----NSTRTWKEVCFACVDG-KEFRLAQMCGLH-IVVHADELEE---LINYYQDRGYF-EELITMLEA 232 (449)
T ss_dssp HHHHHHHHHHH-----TCHHHHHHHHHHHHHT-TCHHHHHHTTTT-TTTCHHHHHH---HHHHHHHTTCH-HHHHHHHHH
T ss_pred HHHHHHHHHHc-----CCchhHHHHHHHHHHc-CcHHHHHHHHHH-HHhCHhhHHH---HHHHHHHCCCH-HHHHHHHHH
Confidence 55555555555 2445554444444433 345544333332 2233322110 11234555666 678899999
Q ss_pred HHHhccCchHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCC-----CCchhHHHHHHHHcCcC
Q 005381 167 MICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP-----DDQSGWFYHLWLLDQTV 235 (699)
Q Consensus 167 ~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~dP-----~d~SaW~Y~~~Ll~~~~ 235 (699)
++..++-...+|...+.+..+..+ +.+.+.++.+-..+.+.| ++...|.=..+|.....
T Consensus 233 aL~le~ah~~~ftel~il~~ky~p----------~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 233 ALGLERAHMGMFTELAILYSKFKP----------QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp HTTSTTCCHHHHHHHHHHHHTTCH----------HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HhCCcHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999988887644 567899999999999999 99999999999996543
No 363
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.62 E-value=0.018 Score=56.16 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=46.0
Q ss_pred EEccCC-CCCccc------CCCCCcccCEEEccCCCCCCC-----cC-CccccccceeecccCCCCCCCC---Ccccccc
Q 005381 538 LQLKNL-SLSRLG------SFDKLLWVQMLDLSHNELRSI-----EG-LEALQLLSCLNLSNNILGSFTA---LEPIRQL 601 (699)
Q Consensus 538 L~Ls~n-~l~~l~------~l~~L~~L~~LdLS~N~L~~l-----~~-l~~L~~L~~L~Ls~N~l~~l~~---~~~l~~l 601 (699)
|+|++| .|..-+ .+..-+.|+.|+|++|.|+.- -. +..-..|+.|+|++|.|+.-.. -+.+..-
T Consensus 46 L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N 125 (197)
T 1pgv_A 46 VNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVT 125 (197)
T ss_dssp EECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTT
T ss_pred EECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhC
Confidence 788774 666321 455667788888888888542 22 4455668888888888754210 0123334
Q ss_pred ccccccccccc
Q 005381 602 KSLRALNISYN 612 (699)
Q Consensus 602 ~~L~~L~Ls~N 612 (699)
+.|+.|+|++|
T Consensus 126 ~tL~~L~L~n~ 136 (197)
T 1pgv_A 126 QSIVEFKADNQ 136 (197)
T ss_dssp CCCSEEECCCC
T ss_pred CceeEEECCCC
Confidence 56777777754
No 364
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=93.19 E-value=0.44 Score=52.93 Aligned_cols=102 Identities=12% Similarity=0.007 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHH
Q 005381 21 AEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELR 92 (699)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~--------nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~ 92 (699)
.+..+...+.+...+.+|.| ++|+.++.++|.+ +|+..++.+.-+.++...++ |++++.
T Consensus 306 l~~a~~~le~a~~~~~qg~~-~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~------------~~eA~~ 372 (490)
T 3n71_A 306 IQFSKDTLEKIDKARSEGLY-HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA------------YEEASH 372 (490)
T ss_dssp HHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC------------HHHHHH
Confidence 44445666677777888988 7999999999987 44455677777777777765 778888
Q ss_pred HHHHHHH--------hCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 005381 93 VVESALR--------QNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKAD 136 (699)
Q Consensus 93 ~~~~~L~--------~nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~d 136 (699)
+++++|. .+|.-..+.+.-+.++... +.++++..++.+++++-
T Consensus 373 ~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~-G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 373 YARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHA-GHIEVGHGMICKAYAIL 423 (490)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHH
Confidence 8777774 3455555666677777766 68999999999999774
No 365
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.15 E-value=0.038 Score=59.34 Aligned_cols=76 Identities=9% Similarity=0.242 Sum_probs=46.9
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
+.+..+ +..++ .|.++..|+.+.+. +.+..++. |.++.+|+.+.|..+ ++.+.. ..|.+|.+|+.+.|..+
T Consensus 270 i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~C~~L~~i~ip~s- 344 (394)
T 4gt6_A 270 VKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD-DAFAGCEQLERIAIPSS- 344 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEECTT-
T ss_pred Eecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH-hHhhCCCCCCEEEECcc-
Confidence 555433 23343 66777777777775 45666665 777777777777654 444422 55777777777777543
Q ss_pred CCCCC
Q 005381 614 IGAHS 618 (699)
Q Consensus 614 I~~lp 618 (699)
++.++
T Consensus 345 v~~I~ 349 (394)
T 4gt6_A 345 VTKIP 349 (394)
T ss_dssp CCBCC
T ss_pred cCEEh
Confidence 55553
No 366
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.00 E-value=1.9 Score=38.47 Aligned_cols=109 Identities=11% Similarity=0.035 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC---
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG--- 118 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~hR~w~L~~~--- 118 (699)
++|+.++.++...+..... -+.+.... ..+++++.+++++... .+..+++.-+.++...
T Consensus 12 ~~A~~~~~~aa~~g~~~a~----lg~~y~~g------------~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~ 73 (138)
T 1klx_A 12 KKAIQYYVKACELNEMFGC----LSLVSNSQ------------INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYV 73 (138)
T ss_dssp HHHHHHHHHHHHTTCTTHH----HHHHTCTT------------SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHcCCCHhhh----HHHHHHcC------------CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCC
Confidence 6889999999988754443 34333322 1256699999999987 6889999999999873
Q ss_pred CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHh----cCCChHHHHHHHHHHHHhc
Q 005381 119 HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAAS----MNRSEEDELKYTEDMICNN 171 (699)
Q Consensus 119 ~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~----l~~~~e~EL~~~~~~I~~n 171 (699)
..+++++++++.++.+. .+..|+..-+.+... .+.+ ++.++++.++++..
T Consensus 74 ~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~-~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNE-KQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCH-HHHHHHHHHHHHCC
Confidence 35899999999999987 678898888888876 3333 78899999998863
No 367
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.75 E-value=0.76 Score=48.65 Aligned_cols=166 Identities=8% Similarity=-0.020 Sum_probs=106.2
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCchHHHHHH--HHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC------hHH
Q 005381 36 HNHIYSKEAVELSTKLLETNPELYTAWNYR--KLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS------YGA 107 (699)
Q Consensus 36 ~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R--~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs------y~a 107 (699)
..|.+ ++|++.+.+++.+.+....+-..+ +..+..... ....+++++.++..++...++. ..+
T Consensus 67 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 67 TMGAK-DKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQ--------VPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHTCH-HHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCS--------CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HCCCH-HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566 689999999988877765442221 111222211 1134788888888888654333 345
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCC------CChhhhhHHHHHHHhcCCChHHHHHHHHHHHHhccCchHHHHHH
Q 005381 108 WHHRKWILSKGHSSIDNELRLLDKFQKADS------RNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNR 181 (699)
Q Consensus 108 W~hR~w~L~~~~~~~~~EL~~~~k~L~~dp------rN~haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n~sN~SAW~~R 181 (699)
+...+-+.... +.++++++++.+++..-. .-..++...+.+...++.+ +++..++++++...+..+..+...
T Consensus 138 ~~~la~~~~~~-g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 138 SIKLATLHYQK-KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNL-AKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHc-cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHhhcCCCchHHH
Confidence 66666666655 689999999999887522 2234677778888888888 678888899998876666555545
Q ss_pred HHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhC
Q 005381 182 SLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTD 217 (699)
Q Consensus 182 ~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~d 217 (699)
+.+...++.. ....+.++++..++..++.+.
T Consensus 216 ~~~~~~~g~~-----~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 216 AELDLMSGIL-----HCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHH-----TTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHh
Confidence 5444444331 112244788888888887653
No 368
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.40 E-value=0.19 Score=53.80 Aligned_cols=112 Identities=13% Similarity=0.155 Sum_probs=72.5
Q ss_pred CCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcc
Q 005381 545 LSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSID 620 (699)
Q Consensus 545 l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~ 620 (699)
++.++ .|.++..|+.+.+..+. ..+.. |.++..|+.+.+. +.++.+.. ..|..|.+|+.+.|..+ ++.++..
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~-~aF~~c~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPE-SVFAGCISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECT-TTTTTCTTCCEEECCTT-CCEECTT
T ss_pred ceEcccceeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCc-eeecCCCCcCEEEeCCc-ccEehHh
Confidence 44444 78899999999997654 44554 8999999999996 45666533 67889999999999754 6666422
Q ss_pred cccccCCCCCcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCC
Q 005381 621 TTKYLCSSPLSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAI 674 (699)
Q Consensus 621 ~~~~l~~l~ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l 674 (699)
.+ .....+..+.+-.+ ++.+ ...+|.++ +|+.+++.+|..
T Consensus 329 aF---~~C~~L~~i~ip~s-v~~I----------~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 329 AF---AGCEQLERIAIPSS-VTKI----------PESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TT---TTCTTCCEEEECTT-CCBC----------CGGGGTTCTTCCEEEESSCHH
T ss_pred Hh---hCCCCCCEEEECcc-cCEE----------hHhHhhCCCCCCEEEECCcee
Confidence 22 22111111121111 1111 12478999 999999998865
No 369
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.25 E-value=0.12 Score=54.81 Aligned_cols=59 Identities=7% Similarity=0.145 Sum_probs=32.1
Q ss_pred CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccc
Q 005381 550 SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNIS 610 (699)
Q Consensus 550 ~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls 610 (699)
.+.++..|+.+.+.. .+..++. |.++.+|+.+.+.++.++.+.. ..|.+|.+|+.+.|.
T Consensus 258 aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 258 LLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEP-RVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECT-TTTTTCTTCCEEECC
T ss_pred ccceeehhccccccc-cceeccccccccccccccccccccccceehh-hhhcCCCCCCEEEcC
Confidence 455555566665543 2444444 5556666666665555555422 445556666666554
No 370
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.94 E-value=0.04 Score=53.63 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=53.8
Q ss_pred eEEccCCCCCccc------CCCCCcccCEEEccCCCCCCCc-----C-CccccccceeecccCCCCCCCC------Cccc
Q 005381 537 CLQLKNLSLSRLG------SFDKLLWVQMLDLSHNELRSIE-----G-LEALQLLSCLNLSNNILGSFTA------LEPI 598 (699)
Q Consensus 537 ~L~Ls~n~l~~l~------~l~~L~~L~~LdLS~N~L~~l~-----~-l~~L~~L~~L~Ls~N~l~~l~~------~~~l 598 (699)
.|+|++|.|...+ .+..-+.|+.|+|++|.|+.-. . +..-..|+.|+|++|....+.. -..+
T Consensus 74 ~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL 153 (197)
T 1pgv_A 74 KFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI 153 (197)
T ss_dssp EEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH
T ss_pred EEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHH
Confidence 3999999998543 3445588999999999996522 2 5556679999998764322210 0123
Q ss_pred cccccccccccccccCC
Q 005381 599 RQLKSLRALNISYNEIG 615 (699)
Q Consensus 599 ~~l~~L~~L~Ls~N~I~ 615 (699)
..-+.|+.|+++.|.++
T Consensus 154 ~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 154 EENESLLRVGISFASME 170 (197)
T ss_dssp HHCSSCCEEECCCCCHH
T ss_pred HhCCCcCeEeccCCCcc
Confidence 44567888888877654
No 371
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.73 E-value=0.96 Score=38.32 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHH
Q 005381 85 SILDEELRVVESALRQN-------FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVA 150 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~n-------PKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl 150 (699)
+.|..++.+++.+++.. +....++.+-+.++.+. +.+++++.+++++++++|.+-.+...++++-
T Consensus 19 ~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~-g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~ 90 (104)
T 2v5f_A 19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ-GDLDKALLLTKKLLELDPEHQRANGNLKYFE 90 (104)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCCHHHHhhHHHHH
Confidence 34899999999999753 34567788888888877 5888899999999999998888877776443
No 372
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=90.46 E-value=0.22 Score=53.28 Aligned_cols=122 Identities=10% Similarity=0.111 Sum_probs=65.0
Q ss_pred CCCCCcccCEEEccCCCCCCCcCCccccccceeecccCCCCCCCCCccccccccccccccccccCCCCCcccccccCCCC
Q 005381 550 SFDKLLWVQMLDLSHNELRSIEGLEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHSIDTTKYLCSSP 629 (699)
Q Consensus 550 ~l~~L~~L~~LdLS~N~L~~l~~l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp~~~~~~l~~l~ 629 (699)
.+..+..++.+.+..+.+... .|..+.+|+.+.+..+ ++.+. ...|..|.+|+.++|..+ ++.++... +..+.
T Consensus 271 ~F~~~~~l~~~~~~~~~i~~~-~F~~~~~L~~i~l~~~-i~~I~-~~aF~~c~~L~~i~lp~~-v~~I~~~a---F~~c~ 343 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIVPEK-TFYGCSSLTEVKLLDS-VKFIG-EEAFESCTSLVSIDLPYL-VEEIGKRS---FRGCT 343 (394)
T ss_dssp TTTTCTTCCEEEECSSEECTT-TTTTCTTCCEEEECTT-CCEEC-TTTTTTCTTCCEECCCTT-CCEECTTT---TTTCT
T ss_pred ccccccccceeccCceeeccc-cccccccccccccccc-cceec-hhhhcCCCCCCEEEeCCc-ccEEhHHh---ccCCC
Confidence 666777777777665543211 1667777777777654 54442 255777777777777643 65553222 22221
Q ss_pred CcccccCCCCccceeecCCcchhhhhhccCCCC-CccEEEecCCCCCCccchHHHhhcCCccccc
Q 005381 630 LSHSVGSEWNHGQTVIDDDIKSYWEAYFILKGL-NLTQFDIVGNAIVNEKFKSFLIKVLPGLKWL 693 (699)
Q Consensus 630 ll~ll~l~~N~l~~~~~~~~~~~~~~p~~l~~L-~L~~LdLs~N~l~~~~~~~~~~~~l~~L~~L 693 (699)
-+..+.+..| ++.+. ..+|.++ +|+.++|..+--. + ...+..+++|+.+
T Consensus 344 ~L~~i~lp~~-l~~I~----------~~aF~~C~~L~~i~lp~~~~~---~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 344 SLSNINFPLS-LRKIG----------ANAFQGCINLKKVELPKRLEQ---Y-RYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEECCCTT-CCEEC----------TTTBTTCTTCCEEEEEGGGGG---G-GGGBCTTCEEEEE
T ss_pred CCCEEEECcc-ccEeh----------HHHhhCCCCCCEEEECCCCEE---h-hheecCCCCCcEE
Confidence 1222222222 11111 2478888 9999998765211 1 1224456666653
No 373
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.24 E-value=0.32 Score=51.54 Aligned_cols=77 Identities=12% Similarity=0.150 Sum_probs=61.7
Q ss_pred EEccCCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCcccccccccccccccccc
Q 005381 538 LQLKNLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNE 613 (699)
Q Consensus 538 L~Ls~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~ 613 (699)
+.+.. .++.++ .|.++.+|+.+.+.++.++.|+. |.++.+|+.+.|..+ ++.+.. ..|.+|.+|+.+.+..+
T Consensus 268 i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip~~- 343 (379)
T 4h09_A 268 LNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV-YAFKNCKALSTISYPKS- 343 (379)
T ss_dssp EEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCCCCCCTT-
T ss_pred ccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH-HHhhCCCCCCEEEECCc-
Confidence 66643 466665 78999999999999999999987 999999999999765 666633 67899999999998754
Q ss_pred CCCCC
Q 005381 614 IGAHS 618 (699)
Q Consensus 614 I~~lp 618 (699)
++.+.
T Consensus 344 v~~I~ 348 (379)
T 4h09_A 344 ITLIE 348 (379)
T ss_dssp CCEEC
T ss_pred cCEEc
Confidence 66653
No 374
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=89.57 E-value=0.24 Score=52.99 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=44.3
Q ss_pred CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccCCCCCCCCCccccccccccccccccccCCCCC
Q 005381 550 SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNNILGSFTALEPIRQLKSLRALNISYNEIGAHS 618 (699)
Q Consensus 550 ~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N~l~~l~~~~~l~~l~~L~~L~Ls~N~I~~lp 618 (699)
.+..+.+|+.+.+..+ +..|+. |.++.+|+.+++..+ ++.+. ...|.+|.+|+.+.+..| ++.++
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~-~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIG-KRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC-TTTTTTCTTCCEECCCTT-CCEEC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEh-HHhccCCCCCCEEEECcc-ccEeh
Confidence 5667777888777654 666655 777778888777644 55553 256777778888877665 66654
No 375
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=88.92 E-value=3.1 Score=35.06 Aligned_cols=72 Identities=15% Similarity=0.058 Sum_probs=57.8
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCC
Q 005381 32 LHNHHNHIYSKEAVELSTKLLETN-------PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (699)
Q Consensus 32 ~~~~~~~~~~~eaL~~~~~~L~~n-------P~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKs 104 (699)
......+.| +.|...+.+++... +....++.+-+.++.+++. +++++..++++++.+|.+
T Consensus 13 ~~~~~~~~y-~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~------------~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 13 KVAYTEADY-YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD------------LDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHccch-HHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC------------HHHHHHHHHHHHhcCCCC
Confidence 334567777 79999999999874 3456788888888888865 899999999999999999
Q ss_pred hHHHHHHHHHHH
Q 005381 105 YGAWHHRKWILS 116 (699)
Q Consensus 105 y~aW~hR~w~L~ 116 (699)
..+.+.++++-.
T Consensus 80 ~~~~~n~~~~~~ 91 (104)
T 2v5f_A 80 QRANGNLKYFEY 91 (104)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhhHHHHHH
Confidence 999887775443
No 376
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=88.60 E-value=11 Score=41.45 Aligned_cols=182 Identities=12% Similarity=-0.001 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHH-
Q 005381 21 AEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR- 99 (699)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~- 99 (699)
+...|.+.+.+.+....+++ +++-.++++++...| ++.+|..--......+. .++.+. ..|+.++.
T Consensus 11 i~~aR~vyer~l~~~P~~~~-e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~----~~~~i~-------~~fe~al~~ 77 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMSKDY-RSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQ----KKFKLY-------EVYEFTLGQ 77 (493)
T ss_dssp -CCHHHHHHHHHHHHHTTCH-HHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC--------CTH-------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCc----hHHHHH-------HHHHHHHHH
Confidence 44566777777777777777 789999999999888 78899855444433321 111222 23344443
Q ss_pred --hCCCChHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhCCCC-----------------------------------
Q 005381 100 --QNFKSYGAWHHRKWILSKGH---SSIDNELRLLDKFQKADSRN----------------------------------- 139 (699)
Q Consensus 100 --~nPKsy~aW~hR~w~L~~~~---~~~~~EL~~~~k~L~~dprN----------------------------------- 139 (699)
.+|.++.+|.--.-.+.... +..++.-..|++++..=+.+
T Consensus 78 vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar 157 (493)
T 2uy1_A 78 FENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSF 157 (493)
T ss_dssp STTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHH
Confidence 36777777754333222110 12333444444444421111
Q ss_pred --------------hhhhhHHHHH-HHhc---CCCh----HHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCcc
Q 005381 140 --------------FHAWNYRRFV-AASM---NRSE----EDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFV 197 (699)
Q Consensus 140 --------------~haW~yR~~v-l~~l---~~~~----e~EL~~~~~~I~~n~sN~SAW~~R~~ll~~l~~~~~~~~~ 197 (699)
...|. .++ +..- +..+ +.....+++++...|.....|......+...+
T Consensus 158 ~~y~~~~~~~~~~s~~~W~--~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~-------- 227 (493)
T 2uy1_A 158 QRYQQIQPLIRGWSVKNAA--RLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG-------- 227 (493)
T ss_dssp HHHHHHHHHHHTCSHHHHH--HHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHhhccHHHHH--HHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--------
Confidence 12221 111 1111 1110 12245678888888988888976655544332
Q ss_pred chhchHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005381 198 SKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (699)
Q Consensus 198 ~~~~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~L 230 (699)
..+++.+.+.+|+.. |.+...|+++.-+
T Consensus 228 ----~~~~ar~i~erAi~~-P~~~~l~~~y~~~ 255 (493)
T 2uy1_A 228 ----QKEKAKKVVERGIEM-SDGMFLSLYYGLV 255 (493)
T ss_dssp ----CHHHHHHHHHHHHHH-CCSSHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHhC-CCcHHHHHHHHhh
Confidence 257888999999999 9999999865444
No 377
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=88.55 E-value=0.84 Score=49.83 Aligned_cols=34 Identities=6% Similarity=-0.036 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHHHhCCCCchhHHHHHHHHcCc
Q 005381 201 KVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (699)
Q Consensus 201 ~~~~eeL~~~~~ai~~dP~d~SaW~Y~~~Ll~~~ 234 (699)
+.+++++.++.+++.++|.+..+|..+.=|....
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999999997777653
No 378
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=88.35 E-value=1.2 Score=48.36 Aligned_cols=98 Identities=5% Similarity=-0.084 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-----CCCc---hHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHH
Q 005381 25 RVLQSQFLHNHHNHIYSKEAVELSTKLLET-----NPEL---YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVES 96 (699)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~eaL~~~~~~L~~-----nP~~---ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~ 96 (699)
++....+.+.+.+|.| ++|+.++.++|.+ -|+| .++.+.-+.+....++ |++++.++++
T Consensus 288 ~~ll~~ie~~~~~g~~-~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~------------~~eA~~~~~~ 354 (429)
T 3qwp_A 288 QESLKKIEELKAHWKW-EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL------------LEEALFYGTR 354 (429)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccH-HHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc------------HHHHHHHHHH
Confidence 3444555556677877 7999999999976 2344 4556666666666654 8888888888
Q ss_pred HHHh--------CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 005381 97 ALRQ--------NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKAD 136 (699)
Q Consensus 97 ~L~~--------nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~d 136 (699)
+|.+ +|.-...++.-+.++... +.+++++.++.+++++-
T Consensus 355 ~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~-g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 355 TMEPYRIFFPGSHPVRGVQVMKVGKLQLHQ-GMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHSCSSCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHcCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence 8843 344445566666666665 68999999999999754
No 379
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=86.96 E-value=24 Score=38.65 Aligned_cols=56 Identities=7% Similarity=-0.093 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 005381 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (699)
Q Consensus 42 ~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~nPKsy~aW~h 110 (699)
.++..+|+++|...|....+|..-...+...+. .+++...+++++.. |++...|..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~------------~~~ar~i~erAi~~-P~~~~l~~~ 251 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQ------------KEKAKKVVERGIEM-SDGMFLSLY 251 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHH-CCSSHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhC-CCcHHHHHH
Confidence 356789999999999999999977666655432 68889999999999 999988864
No 380
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.25 E-value=5.3 Score=35.58 Aligned_cols=66 Identities=9% Similarity=0.068 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHH
Q 005381 85 SILDEELRVVESALRQN-F-KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAA 151 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~n-P-Ksy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~ 151 (699)
....+-+.+++.+++.+ | ....+-++-.....++ +.|++++.+++.+|+++|.|-.|..-+.-+-.
T Consensus 52 ~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl-g~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~ 119 (126)
T 1nzn_A 52 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL-KEYEKALKYVRGLLQTEPQNNQAKELERLIDK 119 (126)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34566777777777766 4 4455555555555566 58888888888888888888888776655433
No 381
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.80 E-value=9.1 Score=34.37 Aligned_cols=66 Identities=8% Similarity=-0.015 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHH
Q 005381 85 SILDEELRVVESALRQNF-KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAA 151 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nP-Ksy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~ 151 (699)
.+..+.+.+++.+++.+| ..-..+++-..--.++ +.|++++.+++.+|+++|.|-.|=.-+.-+-.
T Consensus 57 ~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~ykl-gdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ 123 (134)
T 3o48_A 57 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL-GEYSMAKRYVDTLFEHERNNKQVGALKSMVED 123 (134)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 456777888888888777 4466677776666666 58888888888888888888887665554433
No 382
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.64 E-value=18 Score=32.84 Aligned_cols=65 Identities=8% Similarity=-0.027 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHH
Q 005381 85 SILDEELRVVESALRQNFK-SYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVA 150 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~nPK-sy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl 150 (699)
.+.++-+.+++.+++.+|. .-..-++...-..++ +.|++++.+++.+|+++|.|-.|=.-+.-+-
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl-~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie 121 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL-GEYSMAKRYVDTLFEHERNNKQVGALKSMVE 121 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 4567788888888887774 333444444444455 5888888888888888888888766554443
No 383
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=77.69 E-value=4.3 Score=44.10 Aligned_cols=84 Identities=21% Similarity=0.163 Sum_probs=63.4
Q ss_pred CChHHHHHHHHHHHHhC-----CCCh---hhhhHHHHHHHhcCCChHHHHHHHHHHHHh--------ccCchHHHHHHHH
Q 005381 120 SSIDNELRLLDKFQKAD-----SRNF---HAWNYRRFVAASMNRSEEDELKYTEDMICN--------NFSNYSAWHNRSL 183 (699)
Q Consensus 120 ~~~~~EL~~~~k~L~~d-----prN~---haW~yR~~vl~~l~~~~e~EL~~~~~~I~~--------n~sN~SAW~~R~~ 183 (699)
++|++++++++++|++. |.+. .+.+.-+.+....|++ +++++++.+++++ +|.=-.++++.+.
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~-~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDW-EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCH-HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 57899999999999864 3343 4456667778888998 6788898998875 4444466778888
Q ss_pred HHHHhhhhhccCccchhchHHHHHHHHHHHHHh
Q 005381 184 LLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFT 216 (699)
Q Consensus 184 ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~~ 216 (699)
++...++ +++|+.++.+|+.+
T Consensus 391 ~~~~qg~------------~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLEN------------KAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTC------------HHHHHHHHHHHHHH
T ss_pred HHHhccC------------HHHHHHHHHHHHHH
Confidence 7777654 78888888888854
No 384
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=76.75 E-value=14 Score=32.83 Aligned_cols=96 Identities=16% Similarity=0.163 Sum_probs=74.8
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhC-C-CChhhhhHHHHHHHhcCCChHHHHHHHHHH
Q 005381 92 RVVESALRQNFKSYGAWHHRKWILSKGH--SSIDNELRLLDKFQKAD-S-RNFHAWNYRRFVAASMNRSEEDELKYTEDM 167 (699)
Q Consensus 92 ~~~~~~L~~nPKsy~aW~hR~w~L~~~~--~~~~~EL~~~~k~L~~d-p-rN~haW~yR~~vl~~l~~~~e~EL~~~~~~ 167 (699)
+-+...+..++-+..+=..=.|.|-+.. ....+-+.+++..++.+ | ++-.|-+|-+...-+++.| .+++.|++..
T Consensus 22 ~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y-~~A~~~~~~l 100 (126)
T 1nzn_A 22 KKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY-EKALKYVRGL 100 (126)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHH
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH-HHHHHHHHHH
Confidence 3445556667888888888899997542 12346899999999887 5 6778888888888899999 7899999999
Q ss_pred HHhccCchHHHHHHHHHHHHh
Q 005381 168 ICNNFSNYSAWHNRSLLLSNL 188 (699)
Q Consensus 168 I~~n~sN~SAW~~R~~ll~~l 188 (699)
++..|.|.-|..=+..+-.++
T Consensus 101 L~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 101 LQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp HHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHH
Confidence 999999999976666554443
No 385
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=70.62 E-value=11 Score=33.75 Aligned_cols=101 Identities=11% Similarity=0.165 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhC--CC-ChHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCC-CChhhhhHHHHHHHhcCCChHHH
Q 005381 87 LDEELRVVESALRQN--FK-SYGAWHHRKWILSKGH--SSIDNELRLLDKFQKADS-RNFHAWNYRRFVAASMNRSEEDE 160 (699)
Q Consensus 87 ~~eEL~~~~~~L~~n--PK-sy~aW~hR~w~L~~~~--~~~~~EL~~~~k~L~~dp-rN~haW~yR~~vl~~l~~~~e~E 160 (699)
..+||..++.--... +. +.++=..=.|.|-+.. ....+.+.+++..++.+| +--.+++|-+.---++|.| +++
T Consensus 19 ~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY-~~A 97 (134)
T 3o48_A 19 YPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY-SMA 97 (134)
T ss_dssp CHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCH-HHH
T ss_pred CHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhH-HHH
Confidence 346666655555332 21 3344445577776543 234589999999999988 5578999999999999999 789
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHh
Q 005381 161 LKYTEDMICNNFSNYSAWHNRSLLLSNL 188 (699)
Q Consensus 161 L~~~~~~I~~n~sN~SAW~~R~~ll~~l 188 (699)
+.|++..++..|.|.-|-.=+..+-.++
T Consensus 98 r~y~d~lL~~eP~N~QA~~Lk~~Ie~ki 125 (134)
T 3o48_A 98 KRYVDTLFEHERNNKQVGALKSMVEDKI 125 (134)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999866555544433
No 386
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=68.90 E-value=68 Score=29.06 Aligned_cols=103 Identities=12% Similarity=0.171 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCC-CChhhhhHHHHHHHhcCCChHHH
Q 005381 87 LDEELRVVESALRQN---FKSYGAWHHRKWILSKGH--SSIDNELRLLDKFQKADS-RNFHAWNYRRFVAASMNRSEEDE 160 (699)
Q Consensus 87 ~~eEL~~~~~~L~~n---PKsy~aW~hR~w~L~~~~--~~~~~EL~~~~k~L~~dp-rN~haW~yR~~vl~~l~~~~e~E 160 (699)
..+||..++.--... .-+.++=..=.|.|-+.. ....+.+.+++..++.+| +.-.+-+|-+.---+++.| .++
T Consensus 18 ~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y-~~A 96 (144)
T 1y8m_A 18 YPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY-SMA 96 (144)
T ss_dssp CHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCH-HHH
T ss_pred CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhH-HHH
Confidence 345666555555433 455666666678887653 234588999999999888 5567778888778888999 789
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHhhh
Q 005381 161 LKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (699)
Q Consensus 161 L~~~~~~I~~n~sN~SAW~~R~~ll~~l~~ 190 (699)
+.|++..++..|.|.-|-.=+..+-.++-+
T Consensus 97 r~y~d~lL~~eP~n~QA~~Lk~~Ie~~i~k 126 (144)
T 1y8m_A 97 KRYVDTLFEHERNNKQVGALKSMVEDKIQK 126 (144)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999886666555554433
No 387
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=66.10 E-value=20 Score=39.50 Aligned_cols=84 Identities=8% Similarity=-0.048 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC-----CC---ChhhhhHHHH
Q 005381 85 SILDEELRVVESALRQ--------NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKAD-----SR---NFHAWNYRRF 148 (699)
Q Consensus 85 ~~~~eEL~~~~~~L~~--------nPKsy~aW~hR~w~L~~~~~~~~~EL~~~~k~L~~d-----pr---N~haW~yR~~ 148 (699)
..|++++..++++|.+ +|.-..+.+.-+.++... +.|++++.++.++|++. |. =..+.+.-+.
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~-g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL-QAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3488888999988864 444455666677777766 69999999999999765 22 2245566688
Q ss_pred HHHhcCCChHHHHHHHHHHHHh
Q 005381 149 VAASMNRSEEDELKYTEDMICN 170 (699)
Q Consensus 149 vl~~l~~~~e~EL~~~~~~I~~ 170 (699)
+....|.+ +++..++.+++++
T Consensus 402 ~~~~~G~~-~eA~~~~~~Al~i 422 (490)
T 3n71_A 402 TNWHAGHI-EVGHGMICKAYAI 422 (490)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHH
T ss_pred HHHHCCCH-HHHHHHHHHHHHH
Confidence 88888998 6788888888875
No 388
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=52.76 E-value=29 Score=37.31 Aligned_cols=98 Identities=12% Similarity=0.064 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHhC-----CCCh---hhhhHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 005381 105 YGAWHHRKWILSK-----GHSSIDNELRLLDKFQKAD-----SRNF---HAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (699)
Q Consensus 105 y~aW~hR~w~L~~-----~~~~~~~EL~~~~k~L~~d-----prN~---haW~yR~~vl~~l~~~~e~EL~~~~~~I~~n 171 (699)
-..|..-.-++.. ..+.|+++++.|+++|++. |.+. .+.+.-+-+....|++ +++++++.+++++.
T Consensus 281 ~~~~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~-~eA~~~~~~~L~i~ 359 (429)
T 3qwp_A 281 EQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLL-EEALFYGTRTMEPY 359 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccH-HHHHHHHHHHHHhH
Confidence 3456544444432 1258899999999999865 3343 3455556667778888 67889999988752
Q ss_pred ----cCc----hHHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHH
Q 005381 172 ----FSN----YSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (699)
Q Consensus 172 ----~sN----~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~eeL~~~~~ai~ 215 (699)
+.+ -..++..+.++...++ +++++.++.+|+.
T Consensus 360 ~~~lg~~Hp~~a~~l~nLa~~~~~~g~------------~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 360 RIFFPGSHPVRGVQVMKVGKLQLHQGM------------FPQAMKNLRLAFD 399 (429)
T ss_dssp HHHSCSSCHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHH
T ss_pred HHHcCCCChHHHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHH
Confidence 233 3556666666665543 7888888888875
No 389
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=37.98 E-value=2.2e+02 Score=32.92 Aligned_cols=116 Identities=13% Similarity=0.143 Sum_probs=69.0
Q ss_pred CcHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhhccCCCCchhhhhhHHHHHHHHHHHHHhC-CCChH---HHHHH----
Q 005381 40 YSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN-FKSYG---AWHHR---- 111 (699)
Q Consensus 40 ~~~eaL~~~~~~L~~nP~~ytaWn~R~~~l~~l~~~~~~~~~~~~~~~~eEL~~~~~~L~~n-PKsy~---aW~hR---- 111 (699)
+.+.|+++.+++...+|.... .+..-.+..+.. .....-+.-+.+.++++.....+..- ++... ...+.
T Consensus 264 ~~~~a~~~le~L~~~~p~~~~--~~~~~~i~~~~~-~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL 340 (754)
T 4gns_B 264 LVDFTIDYLKGLTKKDPIHDI--YYKTAMITILDH-IETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLL 340 (754)
T ss_dssp GHHHHHHHHHHHHHHCGGGHH--HHHHHHHHHHTT-CGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCchhH--HHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHH
Confidence 346788889999999998753 333322221111 00000112234555555444444332 33221 11222
Q ss_pred ----HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHhcCCChHHHH
Q 005381 112 ----KWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDEL 161 (699)
Q Consensus 112 ----~w~L~~~~~~~~~EL~~~~k~L~~dprN~haW~yR~~vl~~l~~~~e~EL 161 (699)
.+++. +++++-||++-.++...-|..|.+|.+-.-+.-.++.+ +.+|
T Consensus 341 ~~Qa~FLl~--K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~-e~AL 391 (754)
T 4gns_B 341 NIQTNFLLN--RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEY-EKAL 391 (754)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCH-HHHH
T ss_pred HHHHHHHhc--cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccH-HHHH
Confidence 23333 25899999999999999999999999999999999988 4343
No 390
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.39 E-value=75 Score=26.59 Aligned_cols=45 Identities=11% Similarity=0.126 Sum_probs=27.1
Q ss_pred CCCCCccc--CCCCCcccCEEEccCCCCCCCcC--CccccccceeecccC
Q 005381 542 NLSLSRLG--SFDKLLWVQMLDLSHNELRSIEG--LEALQLLSCLNLSNN 587 (699)
Q Consensus 542 ~n~l~~l~--~l~~L~~L~~LdLS~N~L~~l~~--l~~L~~L~~L~Ls~N 587 (699)
+..++.|+ .|.+++.|+.+.+..+ ++.|.. |.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34455554 6677777777777643 555544 666666666666543
Done!