BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005382
(699 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 598 RLDVDNMSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSQQEQEPCCICQEEY 657
+D D +SYEELLAL + +G S GL+ +TI + L ++Y E C IC+ +Y
Sbjct: 237 EMDPDELSYEELLALGDIVGTESRGLSADTIAS-LPSKRYKEGDNQNGTNESCVICRLDY 295
Query: 658 NDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTSS 699
D ED +L C H +H+ CI WL +CP+C + +STS+
Sbjct: 296 EDDEDLILLPCKHSYHSECINNWLKINKVCPVC-SAEVSTST 336
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 11/99 (11%)
Query: 605 SYEELLALEERIGNVSTGLTEETIK-----NRLKQQKYSISLGSQQE------QEPCCIC 653
SYEELL LE+R+GNV+ G + TI+ ++ K+++ S G + E E C IC
Sbjct: 239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTIC 298
Query: 654 QEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 692
DGED L C H FH C+ QWL CPIC+
Sbjct: 299 LSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRV 337
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 605 SYEELLALEERIGNVSTGLTEETIK-----NRLKQQKYSISLGSQQE------QEPCCIC 653
SYEELL LE+R+GNV+ G + TI+ ++ K+++ G + E E C IC
Sbjct: 238 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEESDTDEKCTIC 297
Query: 654 QEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 692
DGED L C H FH C+ QWL CPIC+
Sbjct: 298 LSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRV 336
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 599 LDVDNMSYEELLALEERIGNVSTGLTEETIKNR-LKQQKYSISLGSQQEQEPCCICQEEY 657
+D D M+YEEL+ L E +G S GL++E I+ K+ K+ ++ E C ICQ +Y
Sbjct: 145 IDPDTMTYEELVELGEAVGTESRGLSQELIETLPTKKYKFGSIFSRKRAGERCVICQLKY 204
Query: 658 NDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 695
GE L C H +H+ CI +WL +CP+C +
Sbjct: 205 KIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEVF 242
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 606 YEELLALEERIGNVSTGLTEETI----------KNRLKQQKYSISLGSQQEQEPCCICQE 655
+EEL+ LEER+GNV+ G ++ TI K +L ++ + +E C IC
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKRKLHCKQDGEEGTEEDTEEKCTICLS 939
Query: 656 EYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 692
+GED L C H FH C+ QWL+ CPIC+
Sbjct: 940 ILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 976
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 6/102 (5%)
Query: 597 MRLDVDNM---SYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSQQEQEPCCI 652
+ LDVD++ +YE LL L ER+G+ GLT+ I+ +L +++ Q EQ C +
Sbjct: 325 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIE-QLPSYRFNPD-SHQSEQTLCVV 382
Query: 653 CQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 694
C ++ + +L C H+FHT C+ +WL CPIC+ A
Sbjct: 383 CFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADA 424
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 18/105 (17%)
Query: 606 YEELLALEERIGNVSTGLTEETIKNRLKQQKYSI---------SLGSQQE---------Q 647
+EEL+ LEER+GNV+ G ++ TI+ KY L S+Q+ +
Sbjct: 809 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 868
Query: 648 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 692
E C IC +GED L C H FH C+ QWL+ CPIC+
Sbjct: 869 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 913
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 18/105 (17%)
Query: 606 YEELLALEERIGNVSTGLTEETIKNRLKQQKYSI---------SLGSQQE---------Q 647
+EEL+ LEER+GNV+ G ++ TI+ KY L S+Q+ +
Sbjct: 853 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 912
Query: 648 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 692
E C IC +GED L C H FH C+ QWL+ CPIC+
Sbjct: 913 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 957
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 18/105 (17%)
Query: 606 YEELLALEERIGNVSTGLTEETIKNRLKQQKYSI---------SLGSQQE---------Q 647
+EEL+ LEER+GNV+ G ++ TI+ KY L S+Q+ +
Sbjct: 840 FEELIHLEERLGNVNRGASQGTIERCTYPHKYEKVSTDWFSQRKLHSKQDGEEATEEDTE 899
Query: 648 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 692
E C IC +GED L C H FH C+ QWL+ CPIC+
Sbjct: 900 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 944
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 18/105 (17%)
Query: 606 YEELLALEERIGNVSTGLTEETIKNRLKQQKYSI---------SLGSQQE---------Q 647
+EEL+ LEER+GNV+ G ++ TI+ KY L S+Q+ +
Sbjct: 845 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEATEEDTE 904
Query: 648 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 692
E C IC +GED L C H FH C+ QWL+ CPIC+
Sbjct: 905 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 949
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 597 MRLDVDNM---SYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSQQEQEPCCI 652
+ LDVD++ +YE LL L ER+G GLT+ I+ +L ++++ Q EQ C +
Sbjct: 341 LDLDVDDVEMENYEALLNLAERLGEAKPRGLTKADIE-QLPSYRFNLE-NHQSEQTLCVV 398
Query: 653 CQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 694
C ++ + +L C H+FH C+ +WL CPIC+ A
Sbjct: 399 CFSDFESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICRADA 440
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 18/105 (17%)
Query: 606 YEELLALEERIGNVSTGLTEETIKNRLKQQKY---SISLGSQQE---------------Q 647
+EEL+ LEER+GNV+ G ++ TI+ KY + SQ++ +
Sbjct: 875 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTE 934
Query: 648 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 692
E C IC +GED L C H FH C+ QWL+ CPIC+
Sbjct: 935 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 979
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 18/105 (17%)
Query: 606 YEELLALEERIGNVSTGLTEETIKNRLKQQKY---SISLGSQQE---------------Q 647
+EEL+ LEER+GNV+ G ++ TI+ KY + SQ++ +
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTE 939
Query: 648 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 692
E C IC +GED L C H FH C+ QWL+ CPIC+
Sbjct: 940 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 984
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 66.6 bits (161), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 597 MRLDVDNM---SYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSQQEQEPCCI 652
+ LDVD++ +YE LL L ER+G+ GLT+ I+ +L +++ Q EQ C +
Sbjct: 300 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIE-QLPSYRFNPD-SHQSEQTLCVV 357
Query: 653 CQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 694
C ++ + +L C H+FH C+ +WL CPIC+ A
Sbjct: 358 CFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADA 399
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 597 MRLDVDN---MSYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSQQEQEPCCI 652
LDV++ +YE LL L ER+G GLT+ I+ +L +++ S Q EQ C +
Sbjct: 411 FELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIE-QLPSYRFNPS-NHQSEQTLCVV 468
Query: 653 CQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 694
C ++ + +L C H+FH C+ +WL CPIC+ A
Sbjct: 469 CMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADA 510
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 597 MRLDVDNM---SYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSQQEQEPCCI 652
+ LDVD++ +YE LL L ER+G+ GLT+ I+ +L +++ Q EQ C +
Sbjct: 243 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIE-QLPSYRFNPD-SHQSEQTLCVV 300
Query: 653 CQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 694
C ++ + +L C H+FH C+ +WL CPIC+ A
Sbjct: 301 CFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADA 342
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 604 MSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSQQEQEPCCICQEEYNDGEDT 663
+S + L E + GLT+E I N + S G + C +C EY +G
Sbjct: 505 LSLAQFFLLNEDDEDQPRGLTKEQIDNLAMR-----SFGENDALKTCSVCITEYTEGNKL 559
Query: 664 GILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 697
L C H++H CI +WL + CPIC+ LS+
Sbjct: 560 RKLPCSHEYHVHCIDRWLSENSTCPICRRAVLSS 593
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 597 MRLDVDN---MSYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSQQEQEPCCI 652
LDV++ +YE LL L ER+G GLT+ I+ +L +++ + Q EQ C +
Sbjct: 408 FELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIE-QLPSYRFNPN-NHQSEQTLCVV 465
Query: 653 CQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 694
C ++ + +L C H+FH C+ +WL CPIC+ A
Sbjct: 466 CMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADA 507
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 604 MSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSQQEQEPCCICQEEYNDGEDT 663
+S + L E + GLT+E I N + S G + C +C EY +G
Sbjct: 529 LSLAQFFLLNEDDDDQPRGLTKEQIDNLAMR-----SFGENDALKTCSVCITEYTEGNKL 583
Query: 664 GILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 697
L C H++H CI +WL + CPIC+ L++
Sbjct: 584 RKLPCSHEYHVHCIDRWLSENSTCPICRRAVLAS 617
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 604 MSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSQQEQEPCCICQEEYNDGEDT 663
+S + L E + GLT+E I N L + Y G + C +C EY +G
Sbjct: 662 LSLAQFFLLNEDDDDQPRGLTKEQIDN-LSTRNY----GENDALKTCSVCITEYTEGNKL 716
Query: 664 GILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 695
L C H++H CI +WL + CPIC+ L
Sbjct: 717 RKLPCSHEYHIHCIDRWLSENSTCPICRRAVL 748
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 604 MSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSQQEQEPCCICQEEYNDGEDT 663
+S + L E + GLT+E I N L + + G + C +C EY +G
Sbjct: 544 LSLAQFFLLNEDDDDQPRGLTKEQIDN-LSTRNF----GENDALKTCSVCITEYTEGNKL 598
Query: 664 GILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 695
L C H++H CI +WL + CPIC+ L
Sbjct: 599 RKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 630
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 604 MSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSQQEQEPCCICQEEYNDGEDT 663
+S + L E + GLT+E I N L + + G + C +C EY +G
Sbjct: 527 LSLAQFFLLNEDDDDQPRGLTKEQIDN-LSTRNF----GENDALKTCSVCITEYTEGNKL 581
Query: 664 GILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTS 698
L C H++H CI +WL + CPIC+ L S
Sbjct: 582 RKLPCSHEYHIHCIDRWLSENSTCPICRRAVLVAS 616
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%)
Query: 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTS 698
QE CCIC Y DG + L CGH FH SC+ +WL CP+CK L +S
Sbjct: 348 QEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSS 401
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 597 MRLDVDNMSYEELLALEERIGNVSTGL-TEETIKNRLKQQKYSISLGSQQEQEPCCICQE 655
+ L DN YE+LLAL +G + + E +K Y S + C IC E
Sbjct: 713 VSLFSDNPMYEDLLALTTYLGPAKKPVASHEDVKRSGGLFAY-FDDASLSSADSCLICLE 771
Query: 656 EYNDGEDTGILH-CGHDFHTSCIKQWLMH-KNLCPICKTTALST 697
Y +G+ L C H FH +CI QWL N CP+C+ ++T
Sbjct: 772 TYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRAHGVTT 815
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTSS 699
E CCIC Y DG + L C H FH++CI +WL + CP+CK L ++
Sbjct: 303 EDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNILKGTT 356
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 637 YSISLGSQQEQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTAL 695
Y + ++Q E C IC ++ +GE ++ HCGH FH C+ WL CP+C++ L
Sbjct: 127 YRYTKAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQL 186
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 629 KNRL-KQQKYSISLGSQQ---EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH- 683
+NRL K+Q I Q E + C IC +EY DG+ IL C H +H+ C+ WL
Sbjct: 205 RNRLTKEQLKQIPTHDYQKGDEYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQT 264
Query: 684 KNLCPICK 691
+ CPICK
Sbjct: 265 RKTCPICK 272
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 629 KNRL-KQQKYSISLGSQQ---EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH- 683
+NRL K+Q I Q E + C IC +EY DG+ +L C H +H+ C+ WL
Sbjct: 205 RNRLTKEQLKQIPTHDYQKGDEYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQT 264
Query: 684 KNLCPICK 691
+ CPICK
Sbjct: 265 RKTCPICK 272
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 570 GLQFEDVMILDQSVFFGVADINDRHRDMRLDVDNMSYEELLALEERIGNVSTGLTEETIK 629
G+ +++ + I + R + ++ ++ + L +E R N + E
Sbjct: 217 GIFLAFFVVVSLVCLILLVKIKLKQRRSQNSMNRLAVQALEKMETRKFNSKSKGRREGSC 276
Query: 630 NRLKQQKYSISLGSQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPI 689
L ++S GS + C IC E+Y DGE+ ++ C H FH C+ WL+ + CP
Sbjct: 277 GALD----TLSSGSTSD---CAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPH 329
Query: 690 CK 691
C+
Sbjct: 330 CR 331
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICK 691
E + C IC EEY DG+ IL C H +H C+ WL K CP+CK
Sbjct: 236 EYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICK 691
E + C IC EEY DG+ IL C H +H C+ WL K CP+CK
Sbjct: 236 EYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTS 698
E CCIC EY DG + L C H FH +CI +WL + CP+CK L +
Sbjct: 334 EDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNILKNA 386
>sp|Q9ULT6|ZNRF3_HUMAN E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1
SV=3
Length = 936
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 570 GLQFEDVMILDQSVFFGVADINDRHRDMRLDVDNMSYEELLALEERIGNVSTGLTEETIK 629
G+ +++ + I + R + ++ ++ + L +E R N + K
Sbjct: 220 GIFLAFFVVVSLVCLILLVKIKLKQRRSQNSMNRLAVQALEKMETRKFNSKS-------K 272
Query: 630 NRLKQQKYSISLGSQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPI 689
R + ++ S C IC E+Y DGE+ ++ C H FH C+ WL+ + CP
Sbjct: 273 GRREGSCGALDTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPH 332
Query: 690 CK 691
C+
Sbjct: 333 CR 334
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 32/124 (25%)
Query: 600 DVDNMSYEELLALEERIGNVST-GLTEETIKNRLKQQKYSI-------SLGSQ------- 644
+ D++ YE L AL+ NVST ++EE I N L KY + SL Q
Sbjct: 135 EFDDLDYETLRALDS--DNVSTTSMSEEEI-NALPVHKYKVLDPENGCSLAKQASTSSSA 191
Query: 645 --------------QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPIC 690
+++ C +C E+ GE L C H FH CI WL + CP+C
Sbjct: 192 EKMLDSANESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCPVC 251
Query: 691 KTTA 694
K A
Sbjct: 252 KFRA 255
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICK 691
E + C IC +EY DG+ IL C H +H C+ WL K CP+CK
Sbjct: 236 EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|Q5NCP0|RNF43_MOUSE E3 ubiquitin-protein ligase RNF43 OS=Mus musculus GN=Rnf43 PE=2
SV=1
Length = 784
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 650 CCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPIC 690
C IC EE+++G++ ++ C H+FH +C+ WL CP+C
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRTCVDPWLYQHRTCPLC 312
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 629 KNRL-KQQKYSISLGSQQ---EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH- 683
+NRL K+Q I Q + + C IC +EY DG+ +L C H +H+ C+ WL
Sbjct: 205 RNRLTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQT 264
Query: 684 KNLCPICK 691
+ CPICK
Sbjct: 265 RKTCPICK 272
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICK 691
E + C IC +EY DG+ IL C H +H C+ WL K CP+CK
Sbjct: 236 EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICK 691
E + C IC +EY DG+ IL C H +H C+ WL K CP+CK
Sbjct: 236 EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICK 691
E + C IC +EY DG+ IL C H +H C+ WL K CP+CK
Sbjct: 236 EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 622 GLTEETIKNRLKQQKYSISLGSQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWL 681
GLT+E I N L + Y + + + C +C +Y G L C H+FH CI +WL
Sbjct: 605 GLTKEQIDN-LSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWL 663
Query: 682 MHKNLCPICKTTAL 695
CPIC+ L
Sbjct: 664 SENCTCPICRQPVL 677
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 622 GLTEETIKNRLKQQKYSISLGSQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWL 681
GLT+E I N L + Y + + C +C +Y G L C H+FH CI +WL
Sbjct: 587 GLTKEQIDN-LSTRSYEQDGVDSELGKVCSVCISDYVAGNKLRQLPCLHEFHIHCIDRWL 645
Query: 682 MHKNLCPICKTTAL 695
CP+C+ L
Sbjct: 646 SENCTCPVCRRPVL 659
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 650 CCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPIC 690
C IC EE+++G++ ++ C H+FH +C+ WL CP+C
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLC 312
>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana
GN=At1g63170 PE=2 SV=2
Length = 381
Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%)
Query: 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTS 698
E CCIC Y D + L CGH FH C+ +WL CP+CK L +S
Sbjct: 320 HEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKSS 373
>sp|A5WWA0|ZNRF3_DANRE E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=3 SV=2
Length = 868
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 650 CCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 691
C IC E+Y DGE+ ++ C H FH C+ WL+ + CP C+
Sbjct: 267 CAICLEKYIDGEELRVIPCAHRFHKKCVDPWLLQHHTCPHCR 308
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696
+ + C IC E Y + IL C H+FH +CI WL+ CP+CK L
Sbjct: 299 DSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRTCPMCKLDVLK 349
>sp|Q08D68|ZNRF3_XENTR E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3
PE=2 SV=1
Length = 853
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 650 CCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 691
C IC E+Y DGE+ ++ C H FH C+ WL+ + CP C+
Sbjct: 266 CAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCR 307
>sp|Q6AY01|RN133_RAT E3 ubiquitin-protein ligase RNF133 OS=Rattus norvegicus GN=Rnf133
PE=2 SV=1
Length = 381
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 623 LTEETIKNRLKQQKYSISLGSQQEQEP----CCICQEEYNDGEDTGILHCGHDFHTSCIK 678
LT E +K Q + I +E P C IC E Y E IL C H FH +CI
Sbjct: 226 LTRE-LKKAFGQLQVRILKEGDEEVSPNADSCVICFEAYKPNEIVRILTCKHFFHKNCID 284
Query: 679 QWLMHKNLCPICKTTAL 695
W++ CP+CK L
Sbjct: 285 PWILAHGTCPMCKCDIL 301
>sp|Q9FG21|ATL71_ARATH Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana
GN=ATL71 PE=3 SV=1
Length = 197
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 622 GLTEETIKNRLK----QQKYSISLGSQQEQEPCC-ICQEEYNDGEDTGIL-HCGHDFHTS 675
GLTEE IK K + + S SL + CC IC +Y + +L C H FH +
Sbjct: 96 GLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDMIRVLPDCNHLFHDN 155
Query: 676 CIKQWLMHKNLCPICKTTAL 695
C+ WL CP+C+T+ L
Sbjct: 156 CVDPWLRLHPTCPVCRTSPL 175
>sp|Q8SV35|Y733_ENCCU Uncharacterized RING finger protein ECU07_0330 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU07_0330 PE=4 SV=1
Length = 314
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 650 CCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-HKNLCPICKT 692
C IC + + +L C H FH C+ +WL+ H N CP+C+T
Sbjct: 269 CAICMSNFIKNQRLRVLPCDHRFHVGCVDKWLLGHSNKCPVCRT 312
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 275,341,998
Number of Sequences: 539616
Number of extensions: 12435891
Number of successful extensions: 33045
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 363
Number of HSP's that attempted gapping in prelim test: 31753
Number of HSP's gapped (non-prelim): 1387
length of query: 699
length of database: 191,569,459
effective HSP length: 125
effective length of query: 574
effective length of database: 124,117,459
effective search space: 71243421466
effective search space used: 71243421466
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)