Query 005384
Match_columns 699
No_of_seqs 287 out of 1401
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 22:36:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4248 Ubiquitin-like protein 100.0 1.6E-39 3.4E-44 371.8 10.9 594 21-699 327-989 (1143)
2 cd01807 GDX_N ubiquitin-like d 99.7 2.4E-17 5.1E-22 138.9 8.3 74 19-92 1-74 (74)
3 cd01793 Fubi Fubi ubiquitin-li 99.7 7.1E-17 1.5E-21 136.2 8.2 74 19-94 1-74 (74)
4 PTZ00044 ubiquitin; Provisiona 99.7 1E-16 2.2E-21 134.7 8.6 75 19-93 1-75 (76)
5 cd01806 Nedd8 Nebb8-like ubiq 99.7 3.5E-16 7.7E-21 130.3 9.1 75 19-93 1-75 (76)
6 cd01802 AN1_N ubiquitin-like d 99.7 3.5E-16 7.7E-21 141.4 9.6 79 15-93 24-102 (103)
7 cd01803 Ubiquitin Ubiquitin. U 99.7 3.6E-16 7.9E-21 130.2 8.5 75 19-93 1-75 (76)
8 cd01797 NIRF_N amino-terminal 99.6 3.3E-16 7.1E-21 134.8 8.0 74 19-92 1-76 (78)
9 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 5.1E-16 1.1E-20 132.4 8.4 72 18-89 1-72 (73)
10 cd01810 ISG15_repeat2 ISG15 ub 99.6 4.4E-16 9.6E-21 131.4 7.9 73 21-93 1-73 (74)
11 cd01805 RAD23_N Ubiquitin-like 99.6 7.6E-16 1.6E-20 129.5 8.9 74 19-92 1-76 (77)
12 cd01804 midnolin_N Ubiquitin-l 99.6 1.3E-15 2.7E-20 130.7 8.8 76 18-94 1-76 (78)
13 cd01809 Scythe_N Ubiquitin-lik 99.6 1.4E-15 3.1E-20 125.4 8.3 72 19-90 1-72 (72)
14 cd01798 parkin_N amino-termina 99.6 1.1E-15 2.3E-20 127.5 7.3 70 21-90 1-70 (70)
15 cd01792 ISG15_repeat1 ISG15 ub 99.6 2.6E-15 5.5E-20 128.9 8.1 75 18-92 2-78 (80)
16 cd01794 DC_UbP_C dendritic cel 99.6 2.4E-15 5.2E-20 127.0 7.1 69 21-89 1-69 (70)
17 cd01808 hPLIC_N Ubiquitin-like 99.6 6.7E-15 1.5E-19 123.1 7.6 71 19-90 1-71 (71)
18 cd01790 Herp_N Homocysteine-re 99.6 9.1E-15 2E-19 127.2 7.6 72 18-89 1-78 (79)
19 PF00240 ubiquitin: Ubiquitin 99.5 1.4E-14 3E-19 119.3 7.6 68 24-91 1-68 (69)
20 cd01812 BAG1_N Ubiquitin-like 99.5 4.9E-14 1.1E-18 116.4 7.5 70 19-89 1-70 (71)
21 cd01796 DDI1_N DNA damage indu 99.5 4.3E-14 9.3E-19 119.1 7.1 68 21-88 1-70 (71)
22 cd01800 SF3a120_C Ubiquitin-li 99.5 7.1E-14 1.5E-18 118.9 7.3 69 26-94 5-73 (76)
23 TIGR00601 rad23 UV excision re 99.5 1E-13 2.2E-18 150.2 9.4 76 19-94 1-79 (378)
24 cd01813 UBP_N UBP ubiquitin pr 99.5 1.1E-13 2.5E-18 118.0 7.6 70 19-89 1-73 (74)
25 cd01763 Sumo Small ubiquitin-r 99.5 3.4E-13 7.4E-18 117.9 10.6 82 13-94 6-87 (87)
26 KOG0005 Ubiquitin-like protein 99.4 5.8E-14 1.3E-18 116.4 4.3 70 19-88 1-70 (70)
27 KOG0010 Ubiquitin-like protein 99.4 1.6E-13 3.5E-18 150.8 7.6 79 17-96 14-92 (493)
28 KOG0004 Ubiquitin/40S ribosoma 99.4 1.2E-13 2.7E-18 132.7 3.7 78 19-96 1-78 (156)
29 KOG0003 Ubiquitin/60s ribosoma 99.4 5.1E-14 1.1E-18 128.4 -0.2 76 19-94 1-76 (128)
30 smart00213 UBQ Ubiquitin homol 99.4 1.4E-12 3.1E-17 104.2 6.8 64 19-83 1-64 (64)
31 cd01799 Hoil1_N Ubiquitin-like 99.2 2.3E-11 5.1E-16 104.4 7.5 67 22-89 6-74 (75)
32 cd01815 BMSC_UbP_N Ubiquitin-l 99.2 9.5E-12 2E-16 107.6 4.7 54 37-90 19-75 (75)
33 cd01814 NTGP5 Ubiquitin-like N 99.2 2.1E-11 4.6E-16 112.4 6.0 79 16-94 2-94 (113)
34 cd01769 UBL Ubiquitin-like dom 99.2 6.2E-11 1.3E-15 95.9 7.4 68 22-89 1-68 (69)
35 KOG0011 Nucleotide excision re 99.2 2.9E-11 6.4E-16 127.9 6.8 75 19-93 1-77 (340)
36 PF11976 Rad60-SLD: Ubiquitin- 99.1 3E-10 6.5E-15 94.6 8.4 71 19-89 1-72 (72)
37 cd01795 USP48_C USP ubiquitin- 98.9 1.8E-09 3.8E-14 98.1 6.5 64 30-93 16-80 (107)
38 cd01789 Alp11_N Ubiquitin-like 98.9 7.9E-09 1.7E-13 90.3 9.2 72 19-90 2-81 (84)
39 KOG4248 Ubiquitin-like protein 98.9 1.7E-09 3.7E-14 126.9 6.6 74 20-94 4-77 (1143)
40 KOG0001 Ubiquitin and ubiquiti 98.8 1.6E-08 3.5E-13 80.5 8.8 72 21-92 2-73 (75)
41 PF13881 Rad60-SLD_2: Ubiquiti 98.7 7.8E-08 1.7E-12 88.8 9.6 76 18-93 2-91 (111)
42 PF14560 Ubiquitin_2: Ubiquiti 98.7 5.2E-08 1.1E-12 84.9 8.1 72 19-90 2-83 (87)
43 PLN02560 enoyl-CoA reductase 98.6 6.2E-08 1.3E-12 103.1 7.7 69 19-87 1-80 (308)
44 cd01801 Tsc13_N Ubiquitin-like 98.5 3.8E-07 8.2E-12 78.1 6.5 68 20-87 2-74 (77)
45 cd01788 ElonginB Ubiquitin-lik 98.4 8.3E-07 1.8E-11 82.6 8.1 73 19-92 3-82 (119)
46 cd00196 UBQ Ubiquitin-like pro 98.3 1.7E-06 3.8E-11 64.4 7.1 67 23-89 2-68 (69)
47 cd01811 OASL_repeat1 2'-5' oli 98.2 3.5E-06 7.6E-11 73.3 7.5 73 19-92 1-78 (80)
48 PF11543 UN_NPL4: Nuclear pore 98.2 3.1E-06 6.7E-11 74.0 6.1 71 17-88 3-78 (80)
49 KOG1872 Ubiquitin-specific pro 97.8 2.9E-05 6.3E-10 86.3 6.8 74 18-92 3-77 (473)
50 KOG1769 Ubiquitin-like protein 97.8 0.00019 4.2E-09 65.5 10.6 79 16-94 18-96 (99)
51 KOG3493 Ubiquitin-like protein 97.8 1.3E-05 2.7E-10 68.3 2.0 71 19-89 2-72 (73)
52 KOG0006 E3 ubiquitin-protein l 97.5 0.00012 2.6E-09 78.3 5.9 71 19-89 1-74 (446)
53 KOG0004 Ubiquitin/40S ribosoma 97.4 5.3E-05 1.2E-09 73.9 1.3 48 100-147 1-51 (156)
54 KOG0003 Ubiquitin/60s ribosoma 97.4 4.6E-05 9.9E-10 70.6 0.2 38 105-142 8-46 (128)
55 PF08817 YukD: WXG100 protein 97.2 0.00077 1.7E-08 58.2 6.4 70 18-87 2-78 (79)
56 cd01802 AN1_N ubiquitin-like d 97.1 5.2E-05 1.1E-09 69.1 -2.1 62 76-142 9-73 (103)
57 PF00789 UBX: UBX domain; Int 96.8 0.0099 2.1E-07 51.0 9.3 74 15-88 3-81 (82)
58 KOG0005 Ubiquitin-like protein 96.8 0.00034 7.3E-09 59.0 -0.1 42 103-144 6-48 (70)
59 KOG4495 RNA polymerase II tran 96.7 0.0033 7.1E-08 57.6 5.9 61 19-80 3-65 (110)
60 KOG4583 Membrane-associated ER 96.4 0.00048 1E-08 74.3 -1.6 80 15-94 6-91 (391)
61 cd01793 Fubi Fubi ubiquitin-li 96.4 0.00017 3.8E-09 61.1 -4.2 41 102-142 3-44 (74)
62 PF10302 DUF2407: DUF2407 ubiq 96.3 0.008 1.7E-07 54.8 5.9 57 21-77 3-64 (97)
63 COG5417 Uncharacterized small 96.3 0.018 3.9E-07 50.7 7.6 70 18-87 4-80 (81)
64 smart00166 UBX Domain present 96.0 0.04 8.6E-07 47.6 8.5 71 17-87 3-78 (80)
65 PF13019 Telomere_Sde2: Telome 95.8 0.038 8.3E-07 54.8 8.2 76 19-94 1-88 (162)
66 PF11470 TUG-UBL1: GLUT4 regul 95.8 0.025 5.5E-07 48.2 6.0 63 25-87 3-65 (65)
67 cd01767 UBX UBX (ubiquitin reg 95.8 0.067 1.5E-06 45.8 8.7 68 18-87 2-74 (77)
68 cd01794 DC_UbP_C dendritic cel 95.5 0.00096 2.1E-08 56.7 -3.4 38 105-142 6-44 (70)
69 COG5227 SMT3 Ubiquitin-like pr 95.5 0.018 3.8E-07 52.4 4.3 77 17-93 23-99 (103)
70 KOG0013 Uncharacterized conser 95.4 0.024 5.3E-07 58.3 5.3 64 27-90 155-218 (231)
71 cd01770 p47_UBX p47-like ubiqu 95.3 0.11 2.3E-06 45.6 8.5 68 18-85 4-75 (79)
72 cd01772 SAKS1_UBX SAKS1-like U 95.0 0.14 3.1E-06 44.5 8.3 69 18-87 4-77 (79)
73 cd01807 GDX_N ubiquitin-like d 94.9 0.0015 3.3E-08 55.3 -4.0 38 105-142 8-46 (74)
74 PTZ00044 ubiquitin; Provisiona 94.8 0.0016 3.4E-08 54.9 -4.2 38 105-142 8-46 (76)
75 KOG1639 Steroid reductase requ 94.7 0.049 1.1E-06 57.4 5.4 69 19-87 1-76 (297)
76 cd01774 Faf1_like2_UBX Faf1 ik 94.6 0.22 4.8E-06 44.2 8.7 70 17-87 3-82 (85)
77 cd01796 DDI1_N DNA damage indu 94.5 0.0034 7.4E-08 53.2 -3.0 37 106-142 8-45 (71)
78 KOG3206 Alpha-tubulin folding 94.1 0.11 2.3E-06 53.7 6.3 73 19-91 2-82 (234)
79 cd01810 ISG15_repeat2 ISG15 ub 94.0 0.0041 8.9E-08 52.7 -3.5 38 105-142 6-44 (74)
80 cd01773 Faf1_like1_UBX Faf1 ik 93.9 0.42 9.1E-06 42.7 8.9 74 15-89 2-80 (82)
81 cd01771 Faf1_UBX Faf1 UBX doma 93.8 0.46 9.9E-06 41.8 8.9 72 16-88 2-78 (80)
82 cd01797 NIRF_N amino-terminal 93.3 0.0063 1.4E-07 52.8 -3.6 38 105-142 8-48 (78)
83 cd01798 parkin_N amino-termina 93.2 0.0061 1.3E-07 51.0 -3.7 38 105-142 6-44 (70)
84 cd01799 Hoil1_N Ubiquitin-like 93.0 0.011 2.4E-07 51.1 -2.5 36 105-141 10-46 (75)
85 cd01791 Ubl5 UBL5 ubiquitin-li 92.9 0.0092 2E-07 51.4 -3.2 38 105-142 9-47 (73)
86 cd01800 SF3a120_C Ubiquitin-li 92.2 0.012 2.5E-07 50.4 -3.3 38 105-142 5-43 (76)
87 cd01806 Nedd8 Nebb8-like ubiq 91.3 0.015 3.2E-07 48.5 -3.6 38 105-142 8-46 (76)
88 PF09379 FERM_N: FERM N-termin 90.9 1.1 2.3E-05 38.0 7.3 68 23-90 1-77 (80)
89 cd01804 midnolin_N Ubiquitin-l 90.6 0.016 3.5E-07 50.0 -4.1 38 105-142 9-47 (78)
90 PF15044 CLU_N: Mitochondrial 90.5 0.41 8.8E-06 41.8 4.4 56 35-90 1-58 (76)
91 cd01813 UBP_N UBP ubiquitin pr 90.4 0.026 5.7E-07 48.5 -3.0 36 106-141 8-44 (74)
92 cd01803 Ubiquitin Ubiquitin. U 90.3 0.019 4.1E-07 47.8 -3.8 38 105-142 8-46 (76)
93 cd01805 RAD23_N Ubiquitin-like 89.7 0.024 5.3E-07 47.7 -3.7 38 105-142 8-48 (77)
94 cd06406 PB1_P67 A PB1 domain i 89.5 1.8 4E-05 38.7 7.7 37 30-66 12-48 (80)
95 cd00754 MoaD Ubiquitin domain 88.5 2.5 5.3E-05 35.7 7.7 57 30-91 17-77 (80)
96 cd06407 PB1_NLP A PB1 domain i 88.4 2.3 5E-05 37.8 7.6 71 19-90 1-81 (82)
97 PLN02799 Molybdopterin synthas 87.7 2.6 5.7E-05 36.3 7.5 68 18-90 1-78 (82)
98 cd01809 Scythe_N Ubiquitin-lik 87.6 0.035 7.7E-07 45.8 -4.0 38 105-142 8-46 (72)
99 smart00666 PB1 PB1 domain. Pho 87.6 2.4 5.3E-05 36.0 7.1 47 19-66 2-48 (81)
100 cd01792 ISG15_repeat1 ISG15 ub 87.2 0.066 1.4E-06 46.2 -2.7 35 105-139 10-45 (80)
101 PRK06437 hypothetical protein; 86.6 4.2 9E-05 34.6 7.8 56 27-91 9-64 (67)
102 cd01812 BAG1_N Ubiquitin-like 86.4 0.079 1.7E-06 43.8 -2.5 36 107-142 9-45 (71)
103 KOG0012 DNA damage inducible p 86.2 1.2 2.6E-05 49.4 5.5 73 20-92 4-78 (380)
104 smart00295 B41 Band 4.1 homolo 86.2 5.6 0.00012 38.6 9.7 74 17-90 2-83 (207)
105 PF14836 Ubiquitin_3: Ubiquiti 85.9 3.2 6.9E-05 37.8 7.1 65 29-94 14-84 (88)
106 PRK06488 sulfur carrier protei 85.3 4.6 0.0001 33.6 7.4 57 27-91 6-62 (65)
107 PRK08364 sulfur carrier protei 84.8 6.9 0.00015 33.3 8.4 63 18-90 4-66 (70)
108 cd06409 PB1_MUG70 The MUG70 pr 83.9 2.6 5.7E-05 38.1 5.7 45 20-64 2-49 (86)
109 cd01763 Sumo Small ubiquitin-r 83.9 0.14 3E-06 45.2 -2.4 38 105-142 19-57 (87)
110 PF12754 Blt1: Cell-cycle cont 83.7 0.34 7.3E-06 52.6 0.0 67 14-80 74-160 (309)
111 cd01808 hPLIC_N Ubiquitin-like 82.0 0.11 2.5E-06 43.5 -3.5 33 110-142 12-45 (71)
112 cd01815 BMSC_UbP_N Ubiquitin-l 81.8 0.16 3.5E-06 44.6 -2.7 27 116-142 19-49 (75)
113 PF00240 ubiquitin: Ubiquitin 81.1 0.086 1.9E-06 43.4 -4.5 38 105-142 3-41 (69)
114 PRK06083 sulfur carrier protei 79.6 14 0.00029 33.2 8.6 69 14-92 14-82 (84)
115 cd06408 PB1_NoxR The PB1 domai 79.3 8.5 0.00019 34.9 7.2 47 18-66 2-48 (86)
116 cd01790 Herp_N Homocysteine-re 78.9 0.25 5.4E-06 43.8 -2.5 38 105-142 9-51 (79)
117 TIGR00601 rad23 UV excision re 78.7 0.23 5E-06 55.2 -3.5 38 105-142 8-49 (378)
118 TIGR01682 moaD molybdopterin c 78.4 15 0.00032 31.6 8.2 56 31-91 18-77 (80)
119 TIGR01687 moaD_arch MoaD famil 77.9 11 0.00025 32.7 7.5 59 29-91 16-85 (88)
120 PF00564 PB1: PB1 domain; Int 77.7 8 0.00017 32.9 6.4 47 18-65 1-48 (84)
121 PF14453 ThiS-like: ThiS-like 77.2 6.4 0.00014 33.3 5.4 56 19-90 1-56 (57)
122 cd01795 USP48_C USP ubiquitin- 76.6 0.42 9.1E-06 44.5 -1.8 34 109-142 16-50 (107)
123 PF10790 DUF2604: Protein of U 76.3 8.1 0.00018 33.8 5.9 65 27-91 4-72 (76)
124 cd05992 PB1 The PB1 domain is 76.0 9.7 0.00021 32.2 6.4 45 20-65 2-47 (81)
125 cd06398 PB1_Joka2 The PB1 doma 74.9 12 0.00027 33.9 7.1 71 20-91 2-88 (91)
126 KOG2086 Protein tyrosine phosp 74.9 4.8 0.0001 45.0 5.3 69 17-85 304-376 (380)
127 TIGR02958 sec_mycoba_snm4 secr 73.7 14 0.00031 42.1 8.9 75 19-94 3-84 (452)
128 PF11620 GABP-alpha: GA-bindin 72.9 8.1 0.00017 35.3 5.3 63 30-92 4-66 (88)
129 PRK05863 sulfur carrier protei 71.5 17 0.00038 30.4 6.8 58 27-92 6-63 (65)
130 PF02597 ThiS: ThiS family; I 70.9 15 0.00033 30.5 6.4 61 30-92 13-75 (77)
131 smart00213 UBQ Ubiquitin homol 69.9 0.38 8.3E-06 38.2 -3.4 34 109-142 11-45 (64)
132 smart00144 PI3K_rbd PI3-kinase 69.3 29 0.00062 32.2 8.3 75 17-91 16-105 (108)
133 smart00455 RBD Raf-like Ras-bi 69.3 12 0.00027 32.2 5.5 45 21-65 2-46 (70)
134 PF10209 DUF2340: Uncharacteri 68.8 14 0.00031 35.6 6.3 57 34-90 21-108 (122)
135 KOG2982 Uncharacterized conser 68.3 7.5 0.00016 43.1 4.8 56 33-88 352-415 (418)
136 PRK08053 sulfur carrier protei 68.2 37 0.00079 28.5 8.0 58 27-91 6-63 (66)
137 PRK05659 sulfur carrier protei 67.3 32 0.0007 28.4 7.5 58 27-91 6-63 (66)
138 PF00794 PI3K_rbd: PI3-kinase 67.0 33 0.00071 31.2 8.1 75 16-90 14-102 (106)
139 PF12436 USP7_ICP0_bdg: ICP0-b 66.4 11 0.00025 39.4 5.7 80 13-92 63-154 (249)
140 cd01760 RBD Ubiquitin-like dom 65.3 15 0.00033 32.1 5.3 45 21-65 2-46 (72)
141 cd01814 NTGP5 Ubiquitin-like N 62.7 0.91 2E-05 43.0 -2.8 31 112-142 20-58 (113)
142 cd01768 RA RA (Ras-associating 60.3 57 0.0012 28.1 8.0 35 28-62 12-48 (87)
143 cd00565 ThiS ThiaminS ubiquiti 60.0 33 0.00071 28.5 6.2 59 27-92 5-63 (65)
144 PF08337 Plexin_cytopl: Plexin 59.5 21 0.00046 41.9 6.7 77 16-92 187-291 (539)
145 cd06411 PB1_p51 The PB1 domain 58.0 27 0.0006 31.3 5.7 36 30-65 8-43 (78)
146 cd01787 GRB7_RA RA (RAS-associ 57.0 64 0.0014 29.5 7.9 59 19-77 3-68 (85)
147 cd06396 PB1_NBR1 The PB1 domai 56.5 37 0.0008 30.6 6.2 36 19-55 1-38 (81)
148 PF02196 RBD: Raf-like Ras-bin 56.3 44 0.00096 28.8 6.6 52 21-72 3-56 (71)
149 PF00788 RA: Ras association ( 55.1 55 0.0012 27.9 7.0 51 21-71 5-67 (93)
150 TIGR01683 thiS thiamine biosyn 54.5 55 0.0012 27.2 6.7 59 26-91 3-61 (64)
151 KOG0001 Ubiquitin and ubiquiti 52.6 1.7 3.8E-05 34.2 -2.4 37 105-141 7-44 (75)
152 PRK07440 hypothetical protein; 52.3 1.1E+02 0.0023 26.4 8.2 64 18-91 4-67 (70)
153 cd06410 PB1_UP2 Uncharacterize 51.3 43 0.00093 30.9 6.0 40 23-63 17-56 (97)
154 PRK06944 sulfur carrier protei 50.5 95 0.0021 25.4 7.5 58 27-92 6-63 (65)
155 PRK11840 bifunctional sulfur c 49.1 58 0.0013 36.2 7.6 63 27-96 6-68 (326)
156 KOG4250 TANK binding protein k 48.8 31 0.00068 41.7 5.9 42 27-68 323-364 (732)
157 PF14533 USP7_C2: Ubiquitin-sp 46.2 61 0.0013 33.3 6.9 104 29-134 34-160 (213)
158 KOG0007 Splicing factor 3a, su 44.9 9.7 0.00021 41.7 1.0 50 25-74 289-339 (341)
159 PRK07696 sulfur carrier protei 44.4 1.2E+02 0.0026 25.8 7.2 58 27-91 6-64 (67)
160 cd01764 Urm1 Urm1-like ubuitin 44.3 69 0.0015 29.1 6.2 57 33-91 23-91 (94)
161 PF11069 DUF2870: Protein of u 43.5 25 0.00055 32.8 3.2 34 60-94 3-38 (98)
162 PRK11130 moaD molybdopterin sy 43.5 1.9E+02 0.0042 25.0 8.6 52 33-89 19-76 (81)
163 cd01769 UBL Ubiquitin-like dom 43.2 2.3 4.9E-05 34.2 -3.2 35 107-141 7-42 (69)
164 KOG2561 Adaptor protein NUB1, 42.9 8.7 0.00019 44.1 0.3 58 33-90 54-111 (568)
165 cd06397 PB1_UP1 Uncharacterize 41.1 61 0.0013 29.5 5.2 57 20-77 2-63 (82)
166 KOG3439 Protein conjugation fa 40.9 93 0.002 29.9 6.6 52 17-68 29-84 (116)
167 KOG4146 Ubiquitin-like protein 40.4 2.4E+02 0.0051 26.6 8.9 76 17-93 3-100 (101)
168 PF14732 UAE_UbL: Ubiquitin/SU 39.9 37 0.0008 30.4 3.7 56 33-88 2-67 (87)
169 PF02017 CIDE-N: CIDE-N domain 38.3 92 0.002 28.0 5.8 65 21-91 5-72 (78)
170 PF10407 Cytokin_check_N: Cdc1 37.9 88 0.0019 27.7 5.6 62 29-91 3-71 (73)
171 KOG0010 Ubiquitin-like protein 36.8 9.7 0.00021 44.0 -0.6 34 110-143 27-61 (493)
172 KOG2689 Predicted ubiquitin re 35.6 87 0.0019 34.2 6.2 71 17-87 209-284 (290)
173 COG0089 RplW Ribosomal protein 35.5 1.2E+02 0.0026 28.1 6.3 61 27-87 20-90 (94)
174 PF14847 Ras_bdg_2: Ras-bindin 34.2 96 0.0021 29.1 5.6 36 21-56 3-38 (105)
175 PTZ00380 microtubule-associate 32.8 1.2E+02 0.0026 29.4 6.1 75 16-90 25-105 (121)
176 PRK05738 rplW 50S ribosomal pr 32.7 1.5E+02 0.0033 27.0 6.4 40 28-67 20-60 (92)
177 PF08825 E2_bind: E2 binding d 31.8 63 0.0014 29.1 3.8 55 33-88 1-69 (84)
178 PRK01777 hypothetical protein; 30.9 2.8E+02 0.0062 25.5 7.9 66 17-91 2-77 (95)
179 PF14451 Ub-Mut7C: Mut7-C ubiq 30.8 1.5E+02 0.0033 26.5 6.0 53 28-89 22-75 (81)
180 KOG1364 Predicted ubiquitin re 30.6 60 0.0013 36.4 4.1 66 19-84 278-349 (356)
181 PF02505 MCR_D: Methyl-coenzym 30.5 85 0.0019 31.5 4.8 54 17-77 66-120 (153)
182 PLN02560 enoyl-CoA reductase 30.2 7.8 0.00017 42.2 -2.6 31 111-141 17-49 (308)
183 KOG3751 Growth factor receptor 29.6 1.1E+02 0.0025 36.1 6.2 77 17-93 187-274 (622)
184 KOG2507 Ubiquitin regulatory p 29.1 1.9E+02 0.0041 33.6 7.7 77 17-93 313-394 (506)
185 CHL00030 rpl23 ribosomal prote 29.0 1.4E+02 0.003 27.5 5.6 39 28-66 19-58 (93)
186 cd01777 SNX27_RA Ubiquitin dom 28.8 1.1E+02 0.0023 28.2 4.7 41 19-59 2-42 (87)
187 cd01611 GABARAP Ubiquitin doma 28.5 3.8E+02 0.0081 25.4 8.5 74 16-90 22-106 (112)
188 PF12436 USP7_ICP0_bdg: ICP0-b 28.1 1.3E+02 0.0027 31.7 5.9 44 19-62 177-223 (249)
189 KOG0011 Nucleotide excision re 28.0 13 0.00028 41.1 -1.3 40 104-143 7-49 (340)
190 TIGR03260 met_CoM_red_D methyl 27.8 98 0.0021 31.0 4.7 54 17-77 65-118 (150)
191 cd01615 CIDE_N CIDE_N domain, 26.3 1.5E+02 0.0033 26.7 5.2 50 38-90 20-71 (78)
192 cd01612 APG12_C Ubiquitin-like 25.9 4.7E+02 0.01 23.6 8.3 71 19-90 2-81 (87)
193 KOG4572 Predicted DNA-binding 25.7 81 0.0018 39.0 4.3 62 27-88 3-68 (1424)
194 cd01818 TIAM1_RBD Ubiquitin do 25.3 1.7E+02 0.0037 26.4 5.3 40 22-61 3-42 (77)
195 PF00276 Ribosomal_L23: Riboso 24.4 1.2E+02 0.0025 27.5 4.2 41 29-69 21-62 (91)
196 cd06404 PB1_aPKC PB1 domain is 24.1 2.1E+02 0.0046 26.1 5.7 46 19-65 1-47 (83)
197 smart00266 CAD Domains present 23.6 1.7E+02 0.0037 26.1 4.9 50 38-90 18-69 (74)
198 COG2104 ThiS Sulfur transfer p 23.2 5E+02 0.011 22.6 7.6 57 27-90 8-64 (68)
199 PF08783 DWNN: DWNN domain; I 22.9 1.7E+02 0.0038 25.9 4.9 33 22-54 2-36 (74)
200 PF03671 Ufm1: Ubiquitin fold 22.5 3.3E+02 0.0072 24.5 6.4 57 32-88 19-76 (76)
201 smart00314 RA Ras association 21.9 3.3E+02 0.0072 23.6 6.5 53 19-71 5-65 (90)
202 cd01817 RGS12_RBD Ubiquitin do 21.7 5E+02 0.011 23.3 7.4 43 23-65 4-46 (73)
203 cd06539 CIDE_N_A CIDE_N domain 21.4 2.1E+02 0.0046 25.9 5.1 64 21-89 5-70 (78)
204 KOG4261 Talin [Cytoskeleton] 20.7 1.3E+02 0.0027 37.3 4.6 109 19-134 4-122 (1003)
205 PF09138 Urm1: Urm1 (Ubiquitin 20.7 1.1E+02 0.0023 28.6 3.2 63 29-93 18-95 (96)
206 PF11388 DotA: Phagosome traff 20.4 43 0.00094 31.2 0.7 13 371-384 89-101 (105)
No 1
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-39 Score=371.83 Aligned_cols=594 Identities=20% Similarity=0.177 Sum_probs=375.9
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCCCCCC-C
Q 005384 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSSSD-G 99 (699)
Q Consensus 21 ItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpggpass-~ 99 (699)
...+++....+...+.+..++..+|.+|...+||+...++|+|-|..++++..+..|+.+.+...+..++.+...... +
T Consensus 327 dl~~~l~~p~~~~~~~~~~~~~~~~p~~~~qtgipi~~~~l~~vg~~~n~d~P~s~~~~e~~~~~p~~~aspa~s~~~~~ 406 (1143)
T KOG4248|consen 327 DLRCNLACPPPRHLHVVRPMSHYTTPMVLQQTGIPIQINVLTTVGMTGNGDRPPSTPNAEAPPPGPGQAASPAPSSTNVE 406 (1143)
T ss_pred HhhhcccCCCCceeeecchhhhccCceeeecccccccccceeeecccccCCCCCCccccccCCCCCccccCcCccccCCC
Confidence 344555666777777778888889999999999999999999999999999999999999999999877766544321 1
Q ss_pred -CCCCC----CCCCcc-----ccccccCCchhhccccccCCCCCcchhHHHHHhhhccCCCCCC---CCCCCc-ccccc-
Q 005384 100 -THNLP----GTSRSH-----GSHVAPSVVIETFNLPDRGDGVPSEISQIVSAVLGSFGLSNIG---SGGGGI-DLREH- 164 (699)
Q Consensus 100 -~qI~v----~tg~ti-----tl~V~psdTVe~VK~~Iq~eGIPpdqQRLIfavl~S~G~~~~~---~G~~~~-~~~~~- 164 (699)
.+-++ .++..+ ...+.......-++...+-+++-..+-...-++...+|..++. ++..+. +..+.
T Consensus 407 tp~qGatt~~~~~~~~~~~~~~~~iSh~s~~dv~~~~~qle~i~~q~~Gv~~~~~~~lg~~Ga~~~na~~~~~~~l~Pth 486 (1143)
T KOG4248|consen 407 TPAQGATTPGPAGTPIGSHPRVIRISHQSVEDVVRMHMQLEDIGTQLGGVPGARTAVLGSPGAGQTNAQQVPGFDLAPTH 486 (1143)
T ss_pred CcccCCcCCCCCCCCCcccccceeccchhhhhHHHHHHHHHhhhhcccCCcccccccccccccCCCccccCCCCcCCCcc
Confidence 11111 111111 1222222222222221112223233333333444444433332 221222 11111
Q ss_pred ------cccCCCccCCCCCcccccCCCCCCCCcccccCCCCccccCCCCCCCCCCCCCCCCCchhh--------------
Q 005384 165 ------AMQRPERTSDAGSALDSAHQQPEQGGTRFQSNRPHSAFGIPTAISLGTLQPPVIPDSLTT-------------- 224 (699)
Q Consensus 165 ------~~~~~~~ts~~~g~~~~~~~q~~q~G~~~~~~~~~~~~~~p~~~~~~~~~~~ViPDSLtT-------------- 224 (699)
...+.++.+... ...++++.+-+...+. .+ .+..-+||...|
T Consensus 487 q~~~~pd~P~i~p~ssg~-----e~~s~~q~~~glstd~---S~----------~q~~s~~dt~~~t~Pv~~lr~~vp~~ 548 (1143)
T KOG4248|consen 487 QVIARPDGPGIGPFSSGG-----EPNSPTQQGAGLSTDH---SL----------AQMVSGPDTQLTTIPVLVLRGCVPGM 548 (1143)
T ss_pred eeecCCCCCCCCCCCCCC-----CCcChhhhcccccccc---ch----------hhhccCCCccceeeccchhhccchhh
Confidence 112222111100 0111222111111111 11 122233444433
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005384 225 LSQYLSQLRHEFDGIGRGGGNNTAATNSTIEGNTNSASHPGSLQEGLPMPASLAEVMQSTRQMLIEQSAECLHQLARQLE 304 (699)
Q Consensus 225 Ls~yl~rmr~~f~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~lp~p~~l~~v~~~t~qll~~~a~~~Ls~la~qL~ 304 (699)
|..++++|...++. ...-.++ .+.. .....+.++.|++|++|+.+|+|||+|..++||++|+++|+
T Consensus 549 l~~~~~qv~~a~d~-~nq~~~n--------~q~p-----~~~~~e~i~rp~hla~Ll~st~qll~g~~A~~lSnis~~ls 614 (1143)
T KOG4248|consen 549 LPPPGPQVASALDT-GNQADTN--------GQAP-----GGPAEEPIARPPHLAELLFSTRQLLSGEPAGCLSNISGVLS 614 (1143)
T ss_pred cCCcchhHHHhhhc-ccccccc--------ccCC-----CCCccccCCCchHHHHHHHHHHHHHhcCCcccccCcccccc
Confidence 34444444444321 1111111 1221 24456789999999999999999999999999999999999
Q ss_pred hccCCCChhhhhhHH--hHHHHHhHHHHHHHHHHHhhccceeEeecCCCCcccccccCCeeEeCCCCCCccccCCCCCCC
Q 005384 305 NQANVTDPSLRTSIQ--TTAWSAGLLLHNLGAFLLELGRTTMTLRLGQTPSEAVVNAGPAVFISPSGPNPLMVQPLPFQP 382 (699)
Q Consensus 305 ~~~~~tD~~~R~~iQ--~~a~~~G~~~q~LGa~LlelGRttmtLrmg~tp~ea~vn~gpAvfispsGpNpimvqp~p~q~ 382 (699)
+.++|+||.+|+++| +++++.|.+|+|||+.||||||||+|++||+| .+|+|+||||||+|+||+|++|||-+-
T Consensus 615 d~vsvSdPsaral~Q~~t~~~qsgs~le~lG~~ll~lgpaTst~tmgpS----~~~ag~av~iSP~Gr~p~~~t~les~~ 690 (1143)
T KOG4248|consen 615 DTVSVSDPSARALRQGMTRFLQSGSLLEHLGIPLLELGPATSTQTMGPS----EPDAGIAVFISPGGRRPNRRTPLESHS 690 (1143)
T ss_pred CCcccCCCcchhhhhhhhhhhhhcccccCCCCccccCCCccccccCCCC----ccCcCcccccCCCCCCCcccCcccccC
Confidence 999999999999999 99999999999999999999999999999999 899999999999999999999999988
Q ss_pred CCccccccCCCcCCCCCCCCcccCCCCC-----------ceeeeEeeeCcccccCCCCcccccccCCCCCCCCCCCcCCC
Q 005384 383 GTSFGAIPMGSVQPGSGLVNGRSAGFLP-----------RRIDIQIRRGSSMVGSNAIQEERSNTQQAPGQGNTATASGT 451 (699)
Q Consensus 383 g~~fg~~~~~s~~~~~~~~~~~g~~~~p-----------r~i~i~i~~~~s~~~~~~n~~e~~~~q~~~~~~~~~~~sg~ 451 (699)
-.+|-.|=.+... -|....|...++ |.|-|.+..|.|....++|+.+..++.+...+++|+.+...
T Consensus 691 p~l~Tsi~s~~~~---~~Ta~~g~~ta~a~ssv~~~agpa~i~~~~~vgn~~~~~~~~q~d~sgtt~s~~sttPS~p~~t 767 (1143)
T KOG4248|consen 691 PELFTSIRSGNHI---VLTAPRGSLTARAGSSVSTEAGPAGIQRLSGVGNIFEPGADGQLDFSGTTDSPLSQTPSMPDVT 767 (1143)
T ss_pred chhhccccccccc---ccccccccccccccccccccCCCCCceeeeccccccCCCCCCccCCCcccCCccccCCCCCCcc
Confidence 7777765333211 133334444444 55555555666677788888888888888888888664433
Q ss_pred CCCCCcccccCCCCCCCCCCCCcEEeeeeee-eccCCCcCCCCCcccCCCCcCCCccccCCCCCCccccccCCC-CCCCC
Q 005384 452 DNLGSQATTRNSDGSSSAGESGVRVVPVRTM-HVASGLVSGEQGHQVSGEHHPAGLQTEQPSVPDSIGQQNAED-PARNG 529 (699)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~vr~vp~rt~-~~~sg~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~r~g 529 (699)
.-++ .++... .++ ++.=+||+. +. +++++.--+.++--.-.+++.....+.+..+..+.+- ..|.+
T Consensus 768 ~l~t-~~~~~~-------~ds-~lq~qm~~~~~d---v~n~g~~Q~p~~ia~~~a~~~~~~~l~~l~~e~~s~~a~~~~~ 835 (1143)
T KOG4248|consen 768 NLPT-GHPQPL-------QDS-TLQPQLRSFFPD---VYNGGHVQIPTPIAIRMALDTLGTGLEELVRESFSLVAVQRGV 835 (1143)
T ss_pred cccC-CCCCCC-------Cch-hhhhhhhhhchh---hhccccccccchhhhhhhhhhhccchhhhccccccccCcccCc
Confidence 2222 222222 222 444455553 11 1222211111222223345566777777775555555 33333
Q ss_pred CCCCCCCcccccCCCceeeeecccCCCCCCChhhhhhhhhhHHHHHHhhCCCCceeecCCCcccccCCCCcccccccccc
Q 005384 530 SLANPNSRQQEASHSHSVNVGTLSTAGTQDNQESERQIRSGVLQLLRNLFPGGEIHVENGGLHGTASDSVPEHAATFRDR 609 (699)
Q Consensus 530 ~~~~p~~~~~~~~~~~~~~in~~~~~g~~~~~~~~~~~~~~~~q~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 609 (699)
+.. ..+| .+-++++.++|.|+++.|-|.+ ....|....+.+..... +.++
T Consensus 836 ds~--------------------~~pg----~~l~sEr~N~i~q~vkpltps~-~aag~~e~~nq~~pe~~-----a~t~ 885 (1143)
T KOG4248|consen 836 DSI--------------------IRPG----LRLLSERFNSIAQHVKPLTPSG-FAAGLLELCNQALPECL-----ALTL 885 (1143)
T ss_pred Ccc--------------------cccc----cchHHHHhhhhhhccccCCccc-cchhhHHHHhccchhhH-----HHHH
Confidence 322 2333 6788889999999999998885 55566677777765443 5778
Q ss_pred ccccCCCccccccc------CcchhHHHH--HHHhhhhccccCCCCCCCCCCCCCCCccccccCCCCCCCC---CCCCcc
Q 005384 610 VVSSTGSSAAEASA------TDEGIFLSN--LLHQIMPFISQHSSAEPTVTPLEDTNAFEHRMSQDSSTHA---GSSSVR 678 (699)
Q Consensus 610 ~~~~~~~~~~~~~~------~~eg~~~s~--~l~~imp~isq~~~~~~~~~~~~~~~~~~~~~~~~ss~~~---~~s~~~ 678 (699)
...+.+.+|-++.- +-||.|.|. ++.+||+||.|+++..-.+ +-..--.++...+.+.++ |++.+.
T Consensus 886 l~lgv~n~E~~~rq~~~~~~~~~g~~~sl~~frqq~mq~l~~~va~si~a---~t~t~~~sn~rv~~s~q~~~e~~t~v~ 962 (1143)
T KOG4248|consen 886 LCLGVANAELAPRQNGRIRRMSEGVNPSLVSFRQQMMQFLLQVVAESIPA---GTDTGLGSNRRVGDSPQALPEEPTEVQ 962 (1143)
T ss_pred HhhcccchhhhhhhhcccccccccccccHHHHHHHHHHHHHHhhhccCcc---cchhhccccccccccccccccccchhc
Confidence 88888888766644 339999888 9999999999999887663 233334555667777754 467776
Q ss_pred -------cccccCCCCCCCCCcccccCC
Q 005384 679 -------TSRRQSDSEPSAPNPKRQKME 699 (699)
Q Consensus 679 -------~s~~~~~~~~~~pnskrqk~e 699 (699)
.++++ .+.++++.+|+|+||
T Consensus 963 ~~~~a~p~sq~~-~~sp~~~tsm~Q~te 989 (1143)
T KOG4248|consen 963 GAERASPESQRE-NASPAPGTSMEQATE 989 (1143)
T ss_pred cccccCcccccc-cCCCCCcccHHHHhh
Confidence 66665 889999999999986
No 2
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.71 E-value=2.4e-17 Score=138.93 Aligned_cols=74 Identities=35% Similarity=0.564 Sum_probs=71.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
|+|+||+.+|+++.++|++++||.+||++|++++|+++++|||+|+||.|+|+++|++|+|+++++|||+++.+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~~ 74 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRPP 74 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999853
No 3
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.69 E-value=7.1e-17 Score=136.24 Aligned_cols=74 Identities=30% Similarity=0.345 Sum_probs=70.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
|+|+||+. +++.++|++++||++||++|++++|+|+++|||+|+||.|+|+++|++|+|+++++|||+++++++
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999984 789999999999999999999999999999999999999999999999999999999999998763
No 4
>PTZ00044 ubiquitin; Provisional
Probab=99.68 E-value=1e-16 Score=134.67 Aligned_cols=75 Identities=33% Similarity=0.469 Sum_probs=73.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|+|+++++|||++++.+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999865
No 5
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.66 E-value=3.5e-16 Score=130.27 Aligned_cols=75 Identities=32% Similarity=0.533 Sum_probs=72.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|++|++|||+++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999765
No 6
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.66 E-value=3.5e-16 Score=141.43 Aligned_cols=79 Identities=30% Similarity=0.427 Sum_probs=75.7
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
....|+|+||+++|+++.++|++++||.+||++|+++.|+++++|||+|+||.|+|+++|++|+|+++++|||++++++
T Consensus 24 ~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 24 FYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred cCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 3457999999999999999999999999999999999999999999999999999999999999999999999999876
No 7
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.65 E-value=3.6e-16 Score=130.21 Aligned_cols=75 Identities=37% Similarity=0.564 Sum_probs=73.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|++|++|||++++.+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 75 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999866
No 8
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.65 E-value=3.3e-16 Score=134.79 Aligned_cols=74 Identities=31% Similarity=0.488 Sum_probs=70.8
Q ss_pred EEEEEEeCCCcE-EEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 19 IEIKIKTLDSQT-YTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 19 MqItVKtl~GKt-~tLe-VdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
|+|+||+++|++ +.++ +++++||.+||++|++++|+++++|||+|+||.|+|+.+|++|+|+++++|||++|+.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 899999999997 6895 8999999999999999999999999999999999999999999999999999999874
No 9
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.64 E-value=5.1e-16 Score=132.38 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=69.9
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEee
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
+|+|+||++.|+.+.++|++++||.+||++|+++.++++++|||+|.||.|+|+++|++|||++|++|||..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 589999999999999999999999999999999999999999999999999999999999999999999975
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.64 E-value=4.4e-16 Score=131.39 Aligned_cols=73 Identities=23% Similarity=0.335 Sum_probs=70.9
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 21 ItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
|+||++.|+++.++|++++||.+||++|+++.|+|+++|+|+|+||.|+|+++|++|+|+++++|+|++++.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~g 73 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRG 73 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999865
No 11
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.64 E-value=7.6e-16 Score=129.50 Aligned_cols=74 Identities=39% Similarity=0.641 Sum_probs=71.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGI--PpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
|+|+||+.+|+++.++|++++||.+||++|++++++ ++++|||+|+|+.|+|+.+|++|+|++|++|+|+++.+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 799999999999999999999999999999999999 99999999999999999999999999999999999875
No 12
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.62 E-value=1.3e-15 Score=130.66 Aligned_cols=76 Identities=22% Similarity=0.307 Sum_probs=72.5
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
.|+|+||+..|+.+.++|++++||.+||++|+++.++++++|||+|+||.|+|+ +|++|||++|++|||+..+.++
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 489999999999999999999999999999999999999999999999999999 9999999999999999988653
No 13
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.62 E-value=1.4e-15 Score=125.43 Aligned_cols=72 Identities=61% Similarity=0.871 Sum_probs=70.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeee
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
|+|+||+++|+++.++|++++||.+||++|++++|+++++|+|+|+|+.|+|+++|++|+|++|++|||++|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999875
No 14
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.61 E-value=1.1e-15 Score=127.48 Aligned_cols=70 Identities=29% Similarity=0.456 Sum_probs=68.1
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeee
Q 005384 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 21 ItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
|+||+++|+++.++|++++||.+||++|++++|+++++|+|+|+||.|+|+.+|++|+|+++++|||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999875
No 15
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.59 E-value=2.6e-15 Score=128.86 Aligned_cols=75 Identities=31% Similarity=0.414 Sum_probs=72.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL--ICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRL--IfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
.|+|+||++.|+++.++|++++||.+||++|++++++++++||| +|+|+.|+|+++|++|||++|++|+|++++.
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~ 78 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC 78 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 49999999999999999999999999999999999999999999 8999999999999999999999999999853
No 16
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.59 E-value=2.4e-15 Score=127.02 Aligned_cols=69 Identities=25% Similarity=0.367 Sum_probs=67.1
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEee
Q 005384 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 21 ItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
++||.++|+++.++|++++||.+||++|+++.|+|+++|||+|+||.|+|+.+|++|+|+++++|||++
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 478999999999999999999999999999999999999999999999999999999999999999987
No 17
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.56 E-value=6.7e-15 Score=123.14 Aligned_cols=71 Identities=30% Similarity=0.493 Sum_probs=67.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeee
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
|+|+||+..|+ +.++|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+|+++++|||++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 57999999997 589999999999999999999999999999999999999999999999999999999975
No 18
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.55 E-value=9.1e-15 Score=127.21 Aligned_cols=72 Identities=26% Similarity=0.320 Sum_probs=65.0
Q ss_pred cEEEEEEeCCCcEEEE--EecCCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCCcccccccc--ccCCCEEEEee
Q 005384 18 TIEIKIKTLDSQTYTL--RVDKQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAYH--VEDGHTLHMVV 89 (699)
Q Consensus 18 tMqItVKtl~GKt~tL--eVdpsdTV~dLKekIeektG--IPpeqQRLIfkGKvLkDdkTLSdYG--IqdGSTLhLVl 89 (699)
.|.|+||+++++++++ ++++++||.+||++|++..+ .++++|||||+||+|+|+.+|++|. +.++++||||+
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 3889999999999555 55899999999999999875 4579999999999999999999996 99999999997
No 19
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.54 E-value=1.4e-14 Score=119.32 Aligned_cols=68 Identities=50% Similarity=0.761 Sum_probs=66.0
Q ss_pred EeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 24 KTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 24 Ktl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
|+++|++|.++|++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++|+|++|++|+|++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 67899999999999999999999999999999999999999999999999999999999999999875
No 20
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.50 E-value=4.9e-14 Score=116.45 Aligned_cols=70 Identities=30% Similarity=0.455 Sum_probs=67.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEee
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
|+|+||+. |+.+.++|++++||.+||++|++++|+++++|||+|+|+.|+|+++|++|+|++|++|+|+.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999996 99999999999999999999999999999999999999999999999999999999999974
No 21
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.50 E-value=4.3e-14 Score=119.09 Aligned_cols=68 Identities=31% Similarity=0.516 Sum_probs=64.7
Q ss_pred EEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc-cccccccccCCCEEEEe
Q 005384 21 IKIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 21 ItVKtl-~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDd-kTLSdYGIqdGSTLhLV 88 (699)
|+||+. +|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+ .+|++|+|++|++|||-
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 999999999999999999999999999999999999999999987 68999999999999983
No 22
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.48 E-value=7.1e-14 Score=118.91 Aligned_cols=69 Identities=26% Similarity=0.449 Sum_probs=66.3
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 26 l~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
++|+++.|+|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+++|++|+|+++++|||+++.+++
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999998764
No 23
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.47 E-value=1e-13 Score=150.17 Aligned_cols=76 Identities=29% Similarity=0.530 Sum_probs=73.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG---VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektG---IPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
|+|+||+++|++|.|+|++++||.+||++|+++.| +++++|||||+||+|+|+++|++|+|+++++|+|++++++.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k~ 79 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPKT 79 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCCC
Confidence 89999999999999999999999999999999998 99999999999999999999999999999999999988654
No 24
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.47 E-value=1.1e-13 Score=118.02 Aligned_cols=70 Identities=30% Similarity=0.443 Sum_probs=66.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe---CCeecCCccccccccccCCCEEEEee
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC---RGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIf---kGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
|.|.||+ .|++|.++|++++||.+||++|++++++|+++|||+| +||.|+|+.+|++|+|++|++|+|+-
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 5789999 6899999999999999999999999999999999996 89999999999999999999999973
No 25
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.46 E-value=3.4e-13 Score=117.87 Aligned_cols=82 Identities=20% Similarity=0.369 Sum_probs=77.6
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 13 e~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
.+....|+|+|++.+|+++.++|.+++++..||++++++.|+++++|||+|+|+.|+|+.|+.+|+|+++++|++++++.
T Consensus 6 ~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~ 85 (87)
T cd01763 6 GEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQT 85 (87)
T ss_pred CCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecc
Confidence 35567799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 005384 93 VP 94 (699)
Q Consensus 93 gg 94 (699)
++
T Consensus 86 GG 87 (87)
T cd01763 86 GG 87 (87)
T ss_pred cC
Confidence 63
No 26
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=5.8e-14 Score=116.38 Aligned_cols=70 Identities=33% Similarity=0.561 Sum_probs=68.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEe
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLV 88 (699)
|.|+||++.||.+.+++++.++|+.+|++|+++.||||.+|||+|.||.+.|+++-++|++.-|++|||+
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999985
No 27
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.43 E-value=1.6e-13 Score=150.76 Aligned_cols=79 Identities=35% Similarity=0.579 Sum_probs=74.1
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCCCC
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpggpa 96 (699)
..|+|+||+.+. +|.|.|..+.||.+||++|..++++++++++|||+||+|||+++|..|||+||+|||||++....+.
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~~~ 92 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPRPT 92 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCCCC
Confidence 569999999977 8999999999999999999999999999999999999999999999999999999999999765443
No 28
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.2e-13 Score=132.72 Aligned_cols=78 Identities=36% Similarity=0.543 Sum_probs=75.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCCCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpggpa 96 (699)
|+|+|+++.++++.++|+.++||..+|.+|+++.+||+++|||||.|+.|+|+.+|+||+|+.-+||||++++.++..
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~k 78 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAK 78 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCcc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999987643
No 29
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=5.1e-14 Score=128.38 Aligned_cols=76 Identities=36% Similarity=0.544 Sum_probs=73.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
|+++++++.||+++++|++++||..||.+|..+.|+|++.|+|+|+||.|+|..||++|+|+.-+|||+++++.++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999886
No 30
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.36 E-value=1.4e-12 Score=104.23 Aligned_cols=64 Identities=53% Similarity=0.788 Sum_probs=61.3
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGH 83 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGS 83 (699)
|+|+||+.+ +.+.++|++++||.+||++|++++++++++|+|+|+|+.|+|+++|++|+|++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 789999998 7899999999999999999999999999999999999999999999999999875
No 31
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.23 E-value=2.3e-11 Score=104.41 Aligned_cols=67 Identities=21% Similarity=0.260 Sum_probs=60.4
Q ss_pred EEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecC-Ccccccccccc-CCCEEEEee
Q 005384 22 KIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLK-DDQLLSAYHVE-DGHTLHMVV 89 (699)
Q Consensus 22 tVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLk-DdkTLSdYGIq-dGSTLhLVl 89 (699)
.=|...++++.++|++++||.+||++|++++|+|+++||| |.|+.|. |+++|++|+|+ +|++|||.+
T Consensus 6 ~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 6 EDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred eccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 3344568899999999999999999999999999999999 9999885 77999999999 889999975
No 32
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.22 E-value=9.5e-12 Score=107.60 Aligned_cols=54 Identities=35% Similarity=0.493 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHHHHHh--CCC-CCCeEEEeCCeecCCccccccccccCCCEEEEeee
Q 005384 37 KQVPVPALKEQIASVT--GVL-SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 37 psdTV~dLKekIeekt--GIP-peqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
.++||.+||++|+++. +++ +++|||||+||.|+|+++|++|+|++|++|||+.+
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence 4799999999999996 475 89999999999999999999999999999999863
No 33
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.19 E-value=2.1e-11 Score=112.42 Aligned_cols=79 Identities=28% Similarity=0.373 Sum_probs=68.7
Q ss_pred CCcEEEEEEeCCCcEE-EEEecCCCCHHHHHHHHHHHh-----CCC--CCCeEEEeCCeecCCcccccccc------ccC
Q 005384 16 ETTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQIASVT-----GVL--SEQQRLICRGKVLKDDQLLSAYH------VED 81 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~-tLeVdpsdTV~dLKekIeekt-----GIP--peqQRLIfkGKvLkDdkTLSdYG------Iqd 81 (699)
++.++|++|..+|..+ .+.+.+++||.+||++|++.+ ++| +++|||||.||+|+|++||++|+ +..
T Consensus 2 ~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 2 EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGG 81 (113)
T ss_pred CccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCC
Confidence 3578999999999665 478999999999999999555 455 89999999999999999999999 777
Q ss_pred CCEEEEeeecCCC
Q 005384 82 GHTLHMVVRQPVP 94 (699)
Q Consensus 82 GSTLhLVlRlpgg 94 (699)
..|+||++|.+..
T Consensus 82 ~~TmHvvlr~~~~ 94 (113)
T cd01814 82 VITMHVVVQPPLA 94 (113)
T ss_pred ceEEEEEecCCCC
Confidence 7999999997653
No 34
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.18 E-value=6.2e-11 Score=95.86 Aligned_cols=68 Identities=50% Similarity=0.751 Sum_probs=64.5
Q ss_pred EEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEee
Q 005384 22 KIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 22 tVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
.||..+|+.+.+++.+++||.+||++|++.+++++++|+|+|+|+.|+|+.+|.+|+|.++++|+++.
T Consensus 1 ~v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CeEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 36777899999999999999999999999999999999999999999999999999999999999875
No 35
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.18 E-value=2.9e-11 Score=127.93 Aligned_cols=75 Identities=31% Similarity=0.537 Sum_probs=72.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektG--IPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
|+|+||++.+.+|+++|.+++||.++|++|+...| +|.++|+|||+||+|+|+.+|.+|+|+++..|.|++.+.+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998876
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.10 E-value=3e-10 Score=94.63 Aligned_cols=71 Identities=28% Similarity=0.482 Sum_probs=66.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCCeecCCccccccccccCCCEEEEee
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPp-eqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
|+|+|++.+|+.+.+.|.+++++..|+++++++.+++. +..+|+|+|+.|.+++|+++|+|++|++|++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999999 999999999999999999999999999999974
No 37
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.92 E-value=1.8e-09 Score=98.14 Aligned_cols=64 Identities=25% Similarity=0.262 Sum_probs=58.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCC-ccccccccccCCCEEEEeeecCC
Q 005384 30 TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKD-DQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 30 t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkD-dkTLSdYGIqdGSTLhLVlRlpg 93 (699)
...++|++++||.+||.+|..+++++|++|+|+|.|+.|.| .++|++|||..+++|+|+++.|.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP~ 80 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEPI 80 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCCc
Confidence 45788999999999999999999999999999999999965 58999999999999999997654
No 38
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.89 E-value=7.9e-09 Score=90.30 Aligned_cols=72 Identities=26% Similarity=0.499 Sum_probs=60.2
Q ss_pred EEEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCCe-----ec-CCccccccccccCCCEEEEeee
Q 005384 19 IEIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRGK-----VL-KDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 19 MqItVKtl~-GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI-fkGK-----vL-kDdkTLSdYGIqdGSTLhLVlR 90 (699)
+.|+|+... ....+.++.+.+||.+||++|+..+|+++..|||. |.|+ .| +|+++|++|++++|++||++-.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 567777643 34455669999999999999999999999999995 8887 45 6779999999999999999853
No 39
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.7e-09 Score=126.93 Aligned_cols=74 Identities=39% Similarity=0.674 Sum_probs=70.7
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 20 qItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
.|+||++|.++.+|.|...+||++||+.|.++..|+.+.|||||.|++|.|+|++.+|+| ||.+|||+-|.+.+
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 499999999999999999999999999999999999999999999999999999999999 99999999996543
No 40
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.84 E-value=1.6e-08 Score=80.47 Aligned_cols=72 Identities=39% Similarity=0.602 Sum_probs=68.7
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 21 ItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
+++++..|+.+.+++.+..+|..+|.+|+.+.+++..+|+|.|.|+.|.|+.+|.+|+|..+.+++|+.+..
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 577888999999999999999999999999999999999999999999999999999999999999998765
No 41
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.70 E-value=7.8e-08 Score=88.82 Aligned_cols=76 Identities=32% Similarity=0.473 Sum_probs=59.8
Q ss_pred cEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhC-------CCCCCeEEEeCCeecCCccccccccccCCC------
Q 005384 18 TIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTG-------VLSEQQRLICRGKVLKDDQLLSAYHVEDGH------ 83 (699)
Q Consensus 18 tMqItVKtl~GK-t~tLeVdpsdTV~dLKekIeektG-------IPpeqQRLIfkGKvLkDdkTLSdYGIqdGS------ 83 (699)
.|.|+++..+|+ +..+.+++++||.+||+.|...+. ..+.+.||||.||.|+|+++|++|++..|.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 588999999999 778999999999999999987653 233679999999999999999999998765
Q ss_pred EEEEeeecCC
Q 005384 84 TLHMVVRQPV 93 (699)
Q Consensus 84 TLhLVlRlpg 93 (699)
++||+++...
T Consensus 82 vmHlvvrp~~ 91 (111)
T PF13881_consen 82 VMHLVVRPNA 91 (111)
T ss_dssp EEEEEE-SSS
T ss_pred EEEEEecCCC
Confidence 7899988654
No 42
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.70 E-value=5.2e-08 Score=84.94 Aligned_cols=72 Identities=28% Similarity=0.495 Sum_probs=59.3
Q ss_pred EEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-C---e---ec-CCccccccccccCCCEEEEe
Q 005384 19 IEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-G---K---VL-KDDQLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 19 MqItVKtl~G--Kt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfk-G---K---vL-kDdkTLSdYGIqdGSTLhLV 88 (699)
++|+|..... +.+..++.+++||.+||.+|+..+|++++.|+|.|. . . .| +|.++|.+|++++|.+||+.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 6788888655 488899999999999999999999999999999877 2 1 23 56799999999999999997
Q ss_pred ee
Q 005384 89 VR 90 (699)
Q Consensus 89 lR 90 (699)
=.
T Consensus 82 D~ 83 (87)
T PF14560_consen 82 DT 83 (87)
T ss_dssp E-
T ss_pred eC
Confidence 43
No 43
>PLN02560 enoyl-CoA reductase
Probab=98.63 E-value=6.2e-08 Score=103.13 Aligned_cols=69 Identities=26% Similarity=0.393 Sum_probs=61.7
Q ss_pred EEEEEEeCCCcEE---EEEecCCCCHHHHHHHHHHHhCC-CCCCeEEEeC---C----eecCCccccccccccCCCEEEE
Q 005384 19 IEIKIKTLDSQTY---TLRVDKQVPVPALKEQIASVTGV-LSEQQRLICR---G----KVLKDDQLLSAYHVEDGHTLHM 87 (699)
Q Consensus 19 MqItVKtl~GKt~---tLeVdpsdTV~dLKekIeektGI-PpeqQRLIfk---G----KvLkDdkTLSdYGIqdGSTLhL 87 (699)
|+|+||..+||.+ +|+|+++.||++||++|+++.++ ++++|||++. | +.|+|+++|++|||++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 7899998888887 79999999999999999999986 8999999983 3 4889999999999999998765
No 44
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.45 E-value=3.8e-07 Score=78.10 Aligned_cols=68 Identities=31% Similarity=0.359 Sum_probs=54.5
Q ss_pred EEEEEeCCCcEE-EEEec-CCCCHHHHHHHHHHHhC-CCCCCeEEE--eCCeecCCccccccccccCCCEEEE
Q 005384 20 EIKIKTLDSQTY-TLRVD-KQVPVPALKEQIASVTG-VLSEQQRLI--CRGKVLKDDQLLSAYHVEDGHTLHM 87 (699)
Q Consensus 20 qItVKtl~GKt~-tLeVd-psdTV~dLKekIeektG-IPpeqQRLI--fkGKvLkDdkTLSdYGIqdGSTLhL 87 (699)
+|.++....+.+ .++++ ++.||.+||+.|++..+ +++++|||. ++|+.|+|+++|.+|||.+|++|++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 456666541333 24444 88999999999999976 578999885 8899999999999999999999876
No 45
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.41 E-value=8.3e-07 Score=82.56 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=62.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccc-------cCCCEEEEeeec
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-------EDGHTLHMVVRQ 91 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGI-------qdGSTLhLVlRl 91 (699)
|-|.||- ...+|.+++.++.||.+||++|+.....||++|||+..+.+|+|++||+|||+ +...+|-|.+|.
T Consensus 3 vFlmIrR-~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 3 VFLMIRR-HKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred eEEEEEe-cceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEec
Confidence 3344544 34567789999999999999999999999999999966788999999999999 668899998886
Q ss_pred C
Q 005384 92 P 92 (699)
Q Consensus 92 p 92 (699)
.
T Consensus 82 ~ 82 (119)
T cd01788 82 S 82 (119)
T ss_pred C
Confidence 3
No 46
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.35 E-value=1.7e-06 Score=64.45 Aligned_cols=67 Identities=39% Similarity=0.544 Sum_probs=61.0
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEee
Q 005384 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 23 VKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
|+..+++...+.+.+..||.+||++|.+++++++++++|+++|+.+++...+.+|++.++++|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3444688889999999999999999999999999999999999999999888999999999999874
No 47
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.24 E-value=3.5e-06 Score=73.34 Aligned_cols=73 Identities=21% Similarity=0.366 Sum_probs=64.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC-----eecCCccccccccccCCCEEEEeeecC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG-----KVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkG-----KvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
|+|+||......+.+.|+|..+|.+||++|....+++- .|||.|.. ..|.+.++|++|||..+..|.|+...+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p 78 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFP 78 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecCC
Confidence 58999999999999999999999999999999999875 99999973 367899999999999998888876543
No 48
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.18 E-value=3.1e-06 Score=74.05 Aligned_cols=71 Identities=20% Similarity=0.322 Sum_probs=44.8
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---eec--CCccccccccccCCCEEEEe
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KVL--KDDQLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkG---KvL--kDdkTLSdYGIqdGSTLhLV 88 (699)
..|-|.|++.+| .+.|+|++++|+.+||++|++.++++.+.|.|..+- +.| .++++|+++||++|+.|+|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 468999999876 577899999999999999999999999999886442 245 46799999999999999874
No 49
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=2.9e-05 Score=86.32 Aligned_cols=74 Identities=24% Similarity=0.375 Sum_probs=68.3
Q ss_pred cEEEEEEeCCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 18 TIEIKIKTLDSQTYTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 18 tMqItVKtl~GKt~tLe-VdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
...|.||+ .|+.|.++ ++.++|+..||.++...+|++|++||++++|+.|+|+-.+...+|+++.+|+|+-...
T Consensus 3 ~~~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 3 SDTVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred cceEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 35688999 58999987 9999999999999999999999999999999999999999999999999999997654
No 50
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00019 Score=65.51 Aligned_cols=79 Identities=18% Similarity=0.374 Sum_probs=73.6
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
.+.|.|+|+.-++....+.|..+.+...|++..+++.|+.....|++|+|+.+++.+|=++++.++++.|.++..+.++
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence 5778899988778888999999999999999999999999999999999999999999999999999999999887654
No 51
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.3e-05 Score=68.30 Aligned_cols=71 Identities=25% Similarity=0.337 Sum_probs=63.3
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEee
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
+++.+...-||+..+.+++++||.+||+.|+..+|..++...|---.-+++|..+|++|.|++|..+.|..
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lelyy 72 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELYY 72 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEee
Confidence 56777777799999999999999999999999999999988887556788999999999999999888754
No 52
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00012 Score=78.30 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=61.1
Q ss_pred EEEEEEeC---CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEee
Q 005384 19 IEIKIKTL---DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 19 MqItVKtl---~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
|.+.|+.. ....+.|+|+.+..|.+||+.++++.|+|+++.|+||.||.|.|+.++..+.+.--+.+|+++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIML 74 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhc
Confidence 44555553 124477899999999999999999999999999999999999999999999888888888883
No 53
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=5.3e-05 Score=73.88 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=42.0
Q ss_pred CCCCC--CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHHhhhcc
Q 005384 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLGSF 147 (699)
Q Consensus 100 ~qI~v--~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfavl~S~ 147 (699)
|.||+ .+++++.+.|++++||+++|++|| +||||+|||||||+.-.--
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLe 51 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccc
Confidence 34666 668899999999999999999999 9999999999999976633
No 54
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=4.6e-05 Score=70.60 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=36.4
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|++++++|+++++|+++|++|+ ++|||+++|+|+|+
T Consensus 8 ~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~ 46 (128)
T KOG0003|consen 8 LTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (128)
T ss_pred eeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhc
Confidence 678999999999999999999999 99999999999986
No 55
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.24 E-value=0.00077 Score=58.17 Aligned_cols=70 Identities=24% Similarity=0.363 Sum_probs=52.3
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---C---CeEEE-eCCeecCCccccccccccCCCEEEE
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---E---QQRLI-CRGKVLKDDQLLSAYHVEDGHTLHM 87 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPp---e---qQRLI-fkGKvLkDdkTLSdYGIqdGSTLhL 87 (699)
.++|+|...+++.+.+.+..+.+|++|...|.+..+.+. . ..+|. -+|..|+++++|++|+|.+|+.|+|
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 467888886678999999999999999999999888644 2 24666 6789999999999999999999987
No 56
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=97.13 E-value=5.2e-05 Score=69.15 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=53.5
Q ss_pred cccccCCCEEEEeeecCCCCCCCCCCCCC--CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 76 AYHVEDGHTLHMVVRQPVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 76 dYGIqdGSTLhLVlRlpggpass~~qI~v--~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.|.+.+-.++|++++... .|++++ ..|+.+.+.|.+++||..||.+|+ ++|||+++|+|+|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~-----~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~ 73 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYD-----TMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWN 73 (103)
T ss_pred ccccCCcceeEEeeccCC-----CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEEC
Confidence 456777789999999765 577766 568889999999999999999999 89999999999975
No 57
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.81 E-value=0.0099 Score=51.00 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=62.5
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEE--eCCeecCCc--cccccccccCCCEEEEe
Q 005384 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLI--CRGKVLKDD--QLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeq-QRLI--fkGKvLkDd--kTLSdYGIqdGSTLhLV 88 (699)
....+.|.||..+|+.+...+.+++||.+|..-|..+...+... ..|+ |-.+.|.++ ++|.++++....+|+|-
T Consensus 3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 45668999999999999999999999999999999888777765 7776 556777543 69999999999998873
No 58
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.00034 Score=59.04 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=38.1
Q ss_pred CCCCCCccccccccCCchhhcccccc-CCCCCcchhHHHHHhh
Q 005384 103 LPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (699)
Q Consensus 103 ~v~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfavl 144 (699)
++++++.+.+.++|+|.|+-+|..+. ++||||.+|||||+--
T Consensus 6 ktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gk 48 (70)
T KOG0005|consen 6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGK 48 (70)
T ss_pred eeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccc
Confidence 34788999999999999999999999 9999999999999743
No 59
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=96.73 E-value=0.0033 Score=57.60 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=51.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecCCcccccccccc
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLKDDQLLSAYHVE 80 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkG--KvLkDdkTLSdYGIq 80 (699)
|-|.||- ...+|.++.+++.||-+||.+++....-|+++|||+.-. .+|+|.++|+|||..
T Consensus 3 ~f~~VrR-~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRR-HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeee-cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 4455655 345678899999999999999999999999999998743 678999999999763
No 60
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.00048 Score=74.32 Aligned_cols=80 Identities=26% Similarity=0.324 Sum_probs=62.7
Q ss_pred CCCcEEEEEEeCCCcE--EEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCCeecCCcccccccccc--CCCEEEEe
Q 005384 15 SETTIEIKIKTLDSQT--YTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGKVLKDDQLLSAYHVE--DGHTLHMV 88 (699)
Q Consensus 15 s~~tMqItVKtl~GKt--~tLeVdpsdTV~dLKekIeektGIPp--eqQRLIfkGKvLkDdkTLSdYGIq--dGSTLhLV 88 (699)
.+..+.++||..+.+. ..|..+..+||.+||..++..+--.+ .+|||+|.||.|.|...|.|+-++ +.+++|||
T Consensus 6 ~e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlv 85 (391)
T KOG4583|consen 6 FEFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLV 85 (391)
T ss_pred CCcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHh
Confidence 3445778888877544 55667789999999999998876444 689999999999999999988554 45788998
Q ss_pred eecCCC
Q 005384 89 VRQPVP 94 (699)
Q Consensus 89 lRlpgg 94 (699)
+..+..
T Consensus 86 cnsk~v 91 (391)
T KOG4583|consen 86 CNSKEV 91 (391)
T ss_pred cCCCCC
Confidence 876543
No 61
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=96.38 E-value=0.00017 Score=61.06 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=35.1
Q ss_pred CCCCCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 102 NLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 102 I~v~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
+++.+.+++.++|++++||++||.+|+ ++|+|+++|+|+|+
T Consensus 3 i~vk~~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~ 44 (74)
T cd01793 3 LFVRAQNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLA 44 (74)
T ss_pred EEEECCCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEEC
Confidence 334344677899999999999999999 99999999999975
No 62
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.32 E-value=0.008 Score=54.76 Aligned_cols=57 Identities=26% Similarity=0.297 Sum_probs=43.5
Q ss_pred EEEEeCC-CcEEEEEec--CCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCCccccccc
Q 005384 21 IKIKTLD-SQTYTLRVD--KQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAY 77 (699)
Q Consensus 21 ItVKtl~-GKt~tLeVd--psdTV~dLKekIeektG--IPpeqQRLIfkGKvLkDdkTLSdY 77 (699)
|+|++.+ -..+.|+|. .+.||..||++|.++.. ..-.++||||+||.|.|...|+..
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 4555544 234667777 78999999999999983 333678999999999998777654
No 63
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.30 E-value=0.018 Score=50.73 Aligned_cols=70 Identities=21% Similarity=0.449 Sum_probs=57.6
Q ss_pred cEEEEE--EeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEeCCeecCCccccccccccCCCEEEE
Q 005384 18 TIEIKI--KTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (699)
Q Consensus 18 tMqItV--Ktl~GKt~tLeVdpsdTV~dLKekIeektGIPp-----eqQRLIfkGKvLkDdkTLSdYGIqdGSTLhL 87 (699)
.|+|+| +.-+|++|.|++....+|+.|-..+.+...+.. ...|..-++++|.+++.|.+|+|.+|+.|.+
T Consensus 4 ~ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 4 HIKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred eEEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 355554 555799999999999999999988877666433 3458889999999999999999999999875
No 64
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.05 E-value=0.04 Score=47.58 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=58.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---ccccccccccCCCEEEE
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--fkGKvLkD---dkTLSdYGIqdGSTLhL 87 (699)
...+|.||..+|+.+...+..++||.+|.+-|....+......+|+ |-.|.|.+ +++|.+.++....+|.|
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 4578999999999999999999999999999976666666667776 55677753 47999999988887765
No 65
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=95.78 E-value=0.038 Score=54.85 Aligned_cols=76 Identities=22% Similarity=0.269 Sum_probs=59.8
Q ss_pred EEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEeC-Ceec--CCccccccccccCC----CEEE
Q 005384 19 IEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLICR-GKVL--KDDQLLSAYHVEDG----HTLH 86 (699)
Q Consensus 19 MqItVKtl~G----Kt~tLeVdpsdTV~dLKekIeektGIPpeqQ-RLIfk-GKvL--kDdkTLSdYGIqdG----STLh 86 (699)
|+|+|++++| .++.+.+..+.||.+|+..|...++++...| .|.+. ++.| .++..++.+.-.+. -+|+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 6899999999 5888999999999999999999999999874 45553 4555 56666777654443 4788
Q ss_pred EeeecCCC
Q 005384 87 MVVRQPVP 94 (699)
Q Consensus 87 LVlRlpgg 94 (699)
|++++.++
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 88888775
No 66
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.76 E-value=0.025 Score=48.24 Aligned_cols=63 Identities=11% Similarity=0.152 Sum_probs=47.0
Q ss_pred eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEE
Q 005384 25 TLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (699)
Q Consensus 25 tl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhL 87 (699)
..+++.+.+.|.++.++.++-++.++++++.+++-.|.|++|.|+-+.++.-.|+.+|++|.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 347889999999999999999999999999999999999999999999999999999999875
No 67
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.76 E-value=0.067 Score=45.77 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=54.0
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---ccccccccccCCCEEEE
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--fkGKvLkD---dkTLSdYGIqdGSTLhL 87 (699)
+.+|.||..+|+.+...+..++||.+|.+-|.....- .....|+ |-.|.|.| +++|.+.|+. .+.+.+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~ 74 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQ 74 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEE
Confidence 4679999999999999999999999999999876543 4556776 45677754 7899999998 455444
No 68
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=95.54 E-value=0.00096 Score=56.73 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=35.0
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..|+++.+.|++++||..+|.+|+ .+|+|+++|+|+|+
T Consensus 6 ~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~ 44 (70)
T cd01794 6 STGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFS 44 (70)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 568888999999999999999999 89999999999874
No 69
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.018 Score=52.43 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=68.6
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
..|.++|-..++.++.+.|..+.+...|.+..+.+.|-..+..|++|+|+.++-++|-.|++.++++.|..+..+-+
T Consensus 23 ~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvG 99 (103)
T COG5227 23 KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVG 99 (103)
T ss_pred cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhc
Confidence 35667777668889999999999999999999999999999999999999999999999999999998877765544
No 70
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.024 Score=58.25 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=56.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeee
Q 005384 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
.++.+.+.+...+|+.++|.++..+.++.+-.|+++|.|++|-|...|.+|+|+.|....|-+.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqvi 218 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVI 218 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEE
Confidence 4677888899999999999999999999999999999999999999999999999954444433
No 71
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.33 E-value=0.11 Score=45.56 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=54.8
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC-CCCeEEE--eCCeecCC-ccccccccccCCCEE
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVL-SEQQRLI--CRGKVLKD-DQLLSAYHVEDGHTL 85 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIP-peqQRLI--fkGKvLkD-dkTLSdYGIqdGSTL 85 (699)
..+|.||..+|+.+...+..++||.+|++-|....+.. .....|+ |-.|.|.| +.||.|.|+.+...+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 57899999999999999999999999999999876432 2456665 66888854 689999999865443
No 72
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.00 E-value=0.14 Score=44.48 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=56.5
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---ccccccccccCCCEEEE
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--fkGKvLkD---dkTLSdYGIqdGSTLhL 87 (699)
..+|.||..+|+.+.-.+..++||.+|++-|....+.. ....|+ |--|.+.+ +++|.+.|+....+|+|
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 46899999999999999999999999999998765432 556676 55788853 48999999998888876
No 73
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=94.92 E-value=0.0015 Score=55.26 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=34.3
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..|+...+.|.+++||++||..|+ ++|+|+++|+|+|.
T Consensus 8 ~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~ 46 (74)
T cd01807 8 LQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFK 46 (74)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 457778899999999999999999 89999999999864
No 74
>PTZ00044 ubiquitin; Provisional
Probab=94.83 E-value=0.0016 Score=54.95 Aligned_cols=38 Identities=8% Similarity=0.241 Sum_probs=34.7
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..|+++.+.|.+++||+.||.+|+ ..|+|+++|||+|+
T Consensus 8 ~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (76)
T PTZ00044 8 LTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYS 46 (76)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 457888899999999999999999 89999999999974
No 75
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=94.68 E-value=0.049 Score=57.42 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=51.0
Q ss_pred EEEEEEeCCC-cEEE-EEecCCCCHHHHHHHHHHH-hCCCCCCeEE----EeCCeecCCccccccccccCCCEEEE
Q 005384 19 IEIKIKTLDS-QTYT-LRVDKQVPVPALKEQIASV-TGVLSEQQRL----ICRGKVLKDDQLLSAYHVEDGHTLHM 87 (699)
Q Consensus 19 MqItVKtl~G-Kt~t-LeVdpsdTV~dLKekIeek-tGIPpeqQRL----IfkGKvLkDdkTLSdYGIqdGSTLhL 87 (699)
|+|+++...+ -.++ .+.+...||.|++++|..+ ..+.+.++|+ .-+||.|.|+.+|++|+..++++|.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 6788877654 2333 5677899999999777554 5576744443 35699999999999999999977654
No 76
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.62 E-value=0.22 Score=44.25 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=58.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecC--------CccccccccccCCCEEE
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLK--------DDQLLSAYHVEDGHTLH 86 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkG--KvLk--------DdkTLSdYGIqdGSTLh 86 (699)
..++|.||..+|+.+.-.+..++||++|..-|.. .+..++...|+++= |.|. .+.||.+.||.+..+|.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 4689999999999999999999999999999964 45566888888654 7775 36799999999877776
Q ss_pred E
Q 005384 87 M 87 (699)
Q Consensus 87 L 87 (699)
|
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 5
No 77
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=94.46 E-value=0.0034 Score=53.17 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=33.9
Q ss_pred CCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 106 tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.++++.+.|++++||..||.+|+ .+|+|+++|+|+|+
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~ 45 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYN 45 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 57778899999999999999999 89999999999974
No 78
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.11 Score=53.66 Aligned_cols=73 Identities=25% Similarity=0.423 Sum_probs=56.5
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCC--e---ec-CCccccccccccCCCEEEEeee
Q 005384 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRG--K---VL-KDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 19 MqItVKtl~GK-t~tLeVdpsdTV~dLKekIeektGIPpeqQRLI-fkG--K---vL-kDdkTLSdYGIqdGSTLhLVlR 90 (699)
++|+|.+..-+ ....++.+++||.+||.+++.++|.+++.++|. |+| | .| +++..|..|+..+|..||++=.
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 56677654322 234567789999999999999999999999885 555 2 45 4568999999999999999754
Q ss_pred c
Q 005384 91 Q 91 (699)
Q Consensus 91 l 91 (699)
-
T Consensus 82 ~ 82 (234)
T KOG3206|consen 82 N 82 (234)
T ss_pred C
Confidence 3
No 79
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=93.98 E-value=0.0041 Score=52.73 Aligned_cols=38 Identities=13% Similarity=0.046 Sum_probs=34.5
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..|+++.++|++++||++||.+|+ ..|+|+++|+|+|+
T Consensus 6 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 44 (74)
T cd01810 6 DKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFE 44 (74)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 457888899999999999999999 89999999999864
No 80
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.93 E-value=0.42 Score=42.70 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=62.4
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC---CccccccccccCCCEEEEee
Q 005384 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK---DDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--fkGKvLk---DdkTLSdYGIqdGSTLhLVl 89 (699)
+...-+|.||..+|+.+.-.+..++++.+|-.-|.. .+.+++...|+ |--|.+. .+.+|.+.|+....+|.|--
T Consensus 2 ~~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 2 NGPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred CCCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 455678999999999999999999999999999988 57788889998 4467773 35899999999999988743
No 81
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.82 E-value=0.46 Score=41.85 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=60.5
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC---CccccccccccCCCEEEEe
Q 005384 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK---DDQLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--fkGKvLk---DdkTLSdYGIqdGSTLhLV 88 (699)
+...+|.||..+|+.+.-.+..++++.+|..-|..+ +.+++..+|+ |--|.+. .+.+|.+.|+....+|.|-
T Consensus 2 ~~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 2 EPISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 456899999999999999999999999999999875 7777888887 5567774 3479999999988888764
No 82
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=93.26 E-value=0.0063 Score=52.82 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=32.2
Q ss_pred CCCCc-ccc-ccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRS-HGS-HVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~t-itl-~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..|+. +.+ .+.+++||+.||.+|+ ++|+|+++|||+|.
T Consensus 8 ~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~ 48 (78)
T cd01797 8 MDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYR 48 (78)
T ss_pred CCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeC
Confidence 34554 467 4899999999999999 89999999999984
No 83
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=93.17 E-value=0.0061 Score=50.96 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=34.2
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..|+...++|+++++|+.||.+|+ ++|+|+++|+|+|+
T Consensus 6 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~ 44 (70)
T cd01798 6 NTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFA 44 (70)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 457788899999999999999999 89999999999865
No 84
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=92.99 E-value=0.011 Score=51.13 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=32.5
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIf 141 (699)
..+.+..+.|++++||+.||.+++ ++|||+++||| |
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~ 46 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-V 46 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-E
Confidence 446777899999999999999999 99999999999 5
No 85
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=92.85 E-value=0.0092 Score=51.38 Aligned_cols=38 Identities=11% Similarity=0.007 Sum_probs=33.8
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..|+.+.+.|.+++||++||.+|+ +.|+|+++|||+|.
T Consensus 9 ~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~ 47 (73)
T cd01791 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW 47 (73)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeC
Confidence 346777789999999999999998 77999999999986
No 86
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=92.22 E-value=0.012 Score=50.40 Aligned_cols=38 Identities=8% Similarity=0.065 Sum_probs=34.5
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|+.+.++|++++||+.||.+|+ ..|||++.|+|+|.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~ 43 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYE 43 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 357788899999999999999999 89999999999975
No 87
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=91.30 E-value=0.015 Score=48.52 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=33.6
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..|+.+.+.|+++.+|+.||.+++ ..|+|++.|||+|.
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~ 46 (76)
T cd01806 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEEC
Confidence 346777789999999999999999 88999999999974
No 88
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=90.93 E-value=1.1 Score=37.97 Aligned_cols=68 Identities=28% Similarity=0.276 Sum_probs=52.1
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEe----CC--eecCCcccccccccc--CCCEEEEeee
Q 005384 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLIC----RG--KVLKDDQLLSAYHVE--DGHTLHMVVR 90 (699)
Q Consensus 23 VKtl~GKt~tLeVdpsdTV~dLKekIeektGIPp-eqQRLIf----kG--KvLkDdkTLSdYGIq--dGSTLhLVlR 90 (699)
|+.+||....++|+++.|+.+|-++|+++.++.. +..=|.| +| .-|+.+++|.++... ...++++.++
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frvk 77 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRVK 77 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEES
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEEE
Confidence 6788999999999999999999999999999875 3346777 22 357888999999777 3445555443
No 89
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=90.63 E-value=0.016 Score=49.97 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=33.6
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..|+...++|+++.||+.+|..|+ +.|+++++|||+|+
T Consensus 9 ~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~ 47 (78)
T cd01804 9 TTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHR 47 (78)
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEEC
Confidence 346677899999999999999998 78999999999976
No 90
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=90.50 E-value=0.41 Score=41.83 Aligned_cols=56 Identities=23% Similarity=0.251 Sum_probs=46.4
Q ss_pred ecCCCCHHHHHHHHHHHhCC-CCCCeEEEeCCeecCCccccccc-cccCCCEEEEeee
Q 005384 35 VDKQVPVPALKEQIASVTGV-LSEQQRLICRGKVLKDDQLLSAY-HVEDGHTLHMVVR 90 (699)
Q Consensus 35 VdpsdTV~dLKekIeektGI-PpeqQRLIfkGKvLkDdkTLSdY-GIqdGSTLhLVlR 90 (699)
|.++++|.+||+-|...... .-....|.++|+.|+|...|+++ +++++++|.|+.+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 57889999999999887553 23556889999999999999988 5899999999854
No 91
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=90.40 E-value=0.026 Score=48.51 Aligned_cols=36 Identities=8% Similarity=0.027 Sum_probs=32.8
Q ss_pred CCCccccccccCCchhhcccccc-CCCCCcchhHHHH
Q 005384 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (699)
Q Consensus 106 tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIf 141 (699)
.++.+.++|++++||+.||..|+ ..|+|+++|+|+|
T Consensus 8 ~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~ 44 (74)
T cd01813 8 GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLG 44 (74)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEe
Confidence 45667789999999999999999 8999999999997
No 92
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=90.32 E-value=0.019 Score=47.84 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=33.7
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..|+.+.+.|.++++|+.+|.+|+ ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~ 46 (76)
T cd01803 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_pred CCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 346777899999999999999999 89999999999873
No 93
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=89.66 E-value=0.024 Score=47.74 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=33.8
Q ss_pred CCCCccccccccCCchhhcccccc-CCCC--CcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGV--PSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGI--PpdqQRLIfa 142 (699)
..|+.+.+.|.+++||..||..|+ .+|+ ++++|+|+|.
T Consensus 8 ~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~ 48 (77)
T cd01805 8 LKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYS 48 (77)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEEC
Confidence 456778899999999999999999 8899 9999999974
No 94
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=89.52 E-value=1.8 Score=38.71 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=35.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 005384 30 TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (699)
Q Consensus 30 t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGK 66 (699)
++.|+|.+..+..+|+++|.++.++++++.+|.|+..
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 8999999999999999999999999999999999864
No 95
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=88.53 E-value=2.5 Score=35.70 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=43.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC----CCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 30 TYTLRVDKQVPVPALKEQIASVTGV----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 30 t~tLeVdpsdTV~dLKekIeektGI----PpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
...+++....||.+|++++..+++- .....++..+|+..+ .++-|++|+.|.++-..
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv 77 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPV 77 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCC
Confidence 3567777789999999999987642 234556777888876 45679999999998544
No 96
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=88.39 E-value=2.3 Score=37.77 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=50.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCCe-----ecCCcccccc----ccccCCCEEEEe
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRGK-----VLKDDQLLSA----YHVEDGHTLHMV 88 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPp-eqQRLIfkGK-----vLkDdkTLSd----YGIqdGSTLhLV 88 (699)
|+|++.. ++..+.+.+.++.+..+|+++|.+++++.. ....|-|..- .|..+.-|.+ |.....++|.|.
T Consensus 1 ~~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~ 79 (82)
T cd06407 1 VRVKATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLL 79 (82)
T ss_pred CEEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEE
Confidence 4566655 678899999999999999999999999865 5677878653 2333334444 445556777776
Q ss_pred ee
Q 005384 89 VR 90 (699)
Q Consensus 89 lR 90 (699)
+.
T Consensus 80 v~ 81 (82)
T cd06407 80 VH 81 (82)
T ss_pred ee
Confidence 54
No 97
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=87.73 E-value=2.6 Score=36.31 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=46.3
Q ss_pred cEEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-CCC--CCeEEEeCCeecCCccccccccccCCCEEEE
Q 005384 18 TIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-VLS--EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (699)
Q Consensus 18 tMqItVKtl~------G-Kt~tLeVdpsdTV~dLKekIeektG-IPp--eqQRLIfkGKvLkDdkTLSdYGIqdGSTLhL 87 (699)
+|+|+|+... | ....+++....||.+|++.|..++. +.. ....+..+++... .++-|++|++|.+
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai 75 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAI 75 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEE
Confidence 4788888873 3 4566788888999999999977652 111 1123556777654 3556888999988
Q ss_pred eee
Q 005384 88 VVR 90 (699)
Q Consensus 88 VlR 90 (699)
+-.
T Consensus 76 ~Pp 78 (82)
T PLN02799 76 IPP 78 (82)
T ss_pred eCC
Confidence 743
No 98
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=87.61 E-value=0.035 Score=45.77 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=33.8
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..|+...+.+.++++|..||.+++ ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (72)
T cd01809 8 LDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYS 46 (72)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 456778899999999999999999 88999999999973
No 99
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=87.59 E-value=2.4 Score=36.05 Aligned_cols=47 Identities=17% Similarity=0.354 Sum_probs=40.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGK 66 (699)
++|+++. ++..+.+.+....|..+|+.+|.+++++.....+|-|...
T Consensus 2 ~~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De 48 (81)
T smart00666 2 VDVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE 48 (81)
T ss_pred ccEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 5677777 6788999999999999999999999998877888888753
No 100
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=87.19 E-value=0.066 Score=46.22 Aligned_cols=35 Identities=11% Similarity=0.062 Sum_probs=31.5
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQI 139 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRL 139 (699)
..|+...+.|+++.||..||..|+ ..|+|+++|||
T Consensus 10 ~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL 45 (80)
T cd01792 10 LGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRL 45 (80)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEE
Confidence 446777889999999999999998 78999999999
No 101
>PRK06437 hypothetical protein; Provisional
Probab=86.55 E-value=4.2 Score=34.59 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=45.3
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
+++...++++...||.+|-++ .+++++...+..+|+.+. .++-|++|+.|.++--.
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V 64 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVF 64 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecc
Confidence 557778888888999988765 478888888899999987 67778899999887543
No 102
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=86.42 E-value=0.079 Score=43.76 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=32.0
Q ss_pred CCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 107 g~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
++.+.+.+.++.||+.||.+|+ ..|+|++.|+|+|.
T Consensus 9 g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 45 (71)
T cd01812 9 GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK 45 (71)
T ss_pred CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC
Confidence 5566788999999999999999 89999999999964
No 103
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=86.24 E-value=1.2 Score=49.37 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=60.7
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc--cccccccccCCCEEEEeeecC
Q 005384 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD--QLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 20 qItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDd--kTLSdYGIqdGSTLhLVlRlp 92 (699)
+|.+.....+++.+.|..+.....|+..+...+++..+..-|+|++++|.++ ..|..||++++++|.+-.+..
T Consensus 4 tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~ 78 (380)
T KOG0012|consen 4 TVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSS 78 (380)
T ss_pred EEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCC
Confidence 3333332567888999999999999999999999999999999999998654 679999999999987755443
No 104
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=86.22 E-value=5.6 Score=38.58 Aligned_cols=74 Identities=22% Similarity=0.241 Sum_probs=52.9
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeC--C----eecCCcccccccccc-CCCEEEEe
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICR--G----KVLKDDQLLSAYHVE-DGHTLHMV 88 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeq-QRLIfk--G----KvLkDdkTLSdYGIq-dGSTLhLV 88 (699)
..+.|.|..++|.+..+.+++++|+.+|.+.|+++.|+.... .-|.+. + ..|+..++|.+...+ ....+++-
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 357889999999999999999999999999999999995422 234432 1 245666677766554 23455554
Q ss_pred ee
Q 005384 89 VR 90 (699)
Q Consensus 89 lR 90 (699)
+|
T Consensus 82 ~r 83 (207)
T smart00295 82 VK 83 (207)
T ss_pred EE
Confidence 44
No 105
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=85.86 E-value=3.2 Score=37.80 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=45.8
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC-----eecC-CccccccccccCCCEEEEeeecCCC
Q 005384 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG-----KVLK-DDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkG-----KvLk-DdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
..++..+++.+||..+++.+.+.+.| .++-||--.. ..|. .+.||.|.+|.+|-+|.+-.|...+
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 35677899999999999999999999 7778885322 2464 4579999999999999888776553
No 106
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=85.27 E-value=4.6 Score=33.56 Aligned_cols=57 Identities=7% Similarity=0.220 Sum_probs=41.2
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
+|+.+.+ + ..||.+|.+.+ ++.++...+.++++.+. .....++-|++||.|.++--.
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V 62 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPM 62 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEec
Confidence 6787776 3 46899888765 56665566778888775 344567779999999987544
No 107
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=84.78 E-value=6.9 Score=33.30 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=45.5
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeee
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
+|+|+|... .+...++++...||.+|.+.+ +++.+...+..+|+.+. .++-|++|+.|.++--
T Consensus 4 mm~v~vng~-~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 4 MIRVKVIGR-GIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIPV 66 (70)
T ss_pred EEEEEEecc-ccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEcc
Confidence 356665332 235677888889999988765 67777777888898874 3667889999988753
No 108
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=83.93 E-value=2.6 Score=38.11 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=39.4
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---CCeEEEeC
Q 005384 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---EQQRLICR 64 (699)
Q Consensus 20 qItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPp---eqQRLIfk 64 (699)
.+++|...|+++.+.+.+++.+.+|++.|.+++++.. ....|.|-
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl 49 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV 49 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE
Confidence 4678899999999999999999999999999999887 35677774
No 109
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=83.90 E-value=0.14 Score=45.17 Aligned_cols=38 Identities=5% Similarity=-0.035 Sum_probs=34.6
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..|+.+.+.|.+++++..||..++ +.|++++++||+|.
T Consensus 19 ~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~ 57 (87)
T cd01763 19 QDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFD 57 (87)
T ss_pred CCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEEC
Confidence 457778899999999999999999 99999999999986
No 110
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=83.70 E-value=0.34 Score=52.55 Aligned_cols=67 Identities=19% Similarity=0.335 Sum_probs=0.0
Q ss_pred CCCCcEEEEEEeCCCcEEEEEec---C--CCCHHHHHHHHHH----------HhCCCCCCeE-----EEeCCeecCCccc
Q 005384 14 SSETTIEIKIKTLDSQTYTLRVD---K--QVPVPALKEQIAS----------VTGVLSEQQR-----LICRGKVLKDDQL 73 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~tLeVd---p--sdTV~dLKekIee----------ktGIPpeqQR-----LIfkGKvLkDdkT 73 (699)
.+...|.|++|.+-.-.+.|.+. + +.+|.+||..++. +.++|.+..+ |+|+-|.+-|.++
T Consensus 74 gs~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~kt 153 (309)
T PF12754_consen 74 GSSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKT 153 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCc
Confidence 44566899999886555554332 2 6889999999999 8999998888 9999999999999
Q ss_pred ccccccc
Q 005384 74 LSAYHVE 80 (699)
Q Consensus 74 LSdYGIq 80 (699)
|.+..-.
T Consensus 154 l~e~l~~ 160 (309)
T PF12754_consen 154 LAEVLAD 160 (309)
T ss_dssp -------
T ss_pred HHHHHhc
Confidence 9887533
No 111
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=82.02 E-value=0.11 Score=43.53 Aligned_cols=33 Identities=12% Similarity=0.059 Sum_probs=29.3
Q ss_pred cccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 110 itl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..+.++++.||..||.+|+ ..|+++++|+|+|.
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~ 45 (71)
T cd01808 12 EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFA 45 (71)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 3688999999999999998 88999999999763
No 112
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=81.78 E-value=0.16 Score=44.62 Aligned_cols=27 Identities=15% Similarity=0.275 Sum_probs=23.2
Q ss_pred cCCchhhcccccc-C--CCCC-cchhHHHHH
Q 005384 116 PSVVIETFNLPDR-G--DGVP-SEISQIVSA 142 (699)
Q Consensus 116 psdTVe~VK~~Iq-~--eGIP-pdqQRLIfa 142 (699)
.++||+.||.+|+ + +|++ +++|||||+
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~ 49 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHC 49 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeC
Confidence 3789999999999 5 6785 999999985
No 113
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=81.14 E-value=0.086 Score=43.42 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=33.8
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..|+.+.+.|.++++|..||..|. ..|+|++.|+|+|.
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~ 41 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYN 41 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEET
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeeee
Confidence 356778899999999999999999 88999999999874
No 114
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=79.61 E-value=14 Score=33.20 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=48.3
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
..+.+|+|+| +|+.+.+ +...||.+|-+. .++++...-+-++|..+ .......+-|++||.|.++--..
T Consensus 14 ~~~~~m~I~V---NG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iV-pr~~w~~t~L~egD~IEIv~~Vg 82 (84)
T PRK06083 14 AAMVLITISI---NDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVV-PRSEWQSTVLSSGDAISLFQAIA 82 (84)
T ss_pred CCCceEEEEE---CCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEe-CHHHcCcccCCCCCEEEEEEEec
Confidence 3444566555 6776654 567788877665 46777777788999888 34456677799999999876443
No 115
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=79.26 E-value=8.5 Score=34.94 Aligned_cols=47 Identities=11% Similarity=0.267 Sum_probs=38.6
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGK 66 (699)
.|+|+|.. .|..+.+.|.++.+..+|.++|.+++++. ...+|-|...
T Consensus 2 ~ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 2 KIRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred cEEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 46777765 57899999999999999999999999985 5556666654
No 116
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=78.94 E-value=0.25 Score=43.75 Aligned_cols=38 Identities=0% Similarity=-0.115 Sum_probs=28.4
Q ss_pred CCCCc--cccccccCCchhhcccccc-C-C-CCCcchhHHHHH
Q 005384 105 GTSRS--HGSHVAPSVVIETFNLPDR-G-D-GVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~t--itl~V~psdTVe~VK~~Iq-~-e-GIPpdqQRLIfa 142 (699)
.+++. +.+++.+++||..+|.+|. . . ..++++|||||+
T Consensus 9 ~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~ 51 (79)
T cd01790 9 PNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYS 51 (79)
T ss_pred CCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEc
Confidence 34444 4455689999999999998 2 2 355799999985
No 117
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.73 E-value=0.23 Score=55.18 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=34.0
Q ss_pred CCCCccccccccCCchhhcccccc-CCC---CCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDG---VPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eG---IPpdqQRLIfa 142 (699)
..++.+.+.|++++||..||.+|+ ..| +++++|+|||.
T Consensus 8 l~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~ 49 (378)
T TIGR00601 8 LQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYS 49 (378)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEEC
Confidence 457778899999999999999998 666 99999999987
No 118
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=78.43 E-value=15 Score=31.65 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=40.4
Q ss_pred EEEEecCC-CCHHHHHHHHHHHhC-CC--CCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 31 YTLRVDKQ-VPVPALKEQIASVTG-VL--SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 31 ~tLeVdps-dTV~dLKekIeektG-IP--peqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
..+++... .||.+|++.+.+++. +- ....++..+++...+ +.-|++|+.|.++-..
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~Ppv 77 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPV 77 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCC
Confidence 46788766 899999999998874 11 123456677777664 5678999999887543
No 119
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=77.87 E-value=11 Score=32.69 Aligned_cols=59 Identities=8% Similarity=0.137 Sum_probs=40.8
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCC-----CC------CCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 29 QTYTLRVDKQVPVPALKEQIASVTGV-----LS------EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIeektGI-----Pp------eqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
....+++. ..||.+|++.+.+++.- -. ...++..+|+..+++.. +-|++|+.|.++-..
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~Ppv 85 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPV 85 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCC
Confidence 34667776 89999999999887641 11 23556677777654432 678999999987543
No 120
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=77.72 E-value=8 Score=32.90 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=39.7
Q ss_pred cEEEEEEeCCCcEEE-EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 005384 18 TIEIKIKTLDSQTYT-LRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (699)
Q Consensus 18 tMqItVKtl~GKt~t-LeVdpsdTV~dLKekIeektGIPpeqQRLIfkG 65 (699)
++.|+++.. +..+. +.+....+..+|+.+|+++++......+|.|..
T Consensus 1 t~~vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYG-GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEET-TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CEEEEEEEC-CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 467888774 45555 899999999999999999999998888999874
No 121
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=77.18 E-value=6.4 Score=33.25 Aligned_cols=56 Identities=14% Similarity=0.377 Sum_probs=40.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeee
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
|+|+| +|+. +++....|+.+||.++..... .+||+|-..+++ +-+++|+.|.|+.|
T Consensus 1 M~I~v---N~k~--~~~~~~~tl~~lr~~~k~~~D------I~I~NGF~~~~d-----~~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 1 MKIKV---NEKE--IETEENTTLFELRKESKPDAD------IVILNGFPTKED-----IELKEGDEVFLIKK 56 (57)
T ss_pred CEEEE---CCEE--EEcCCCcCHHHHHHhhCCCCC------EEEEcCcccCCc-----cccCCCCEEEEEeC
Confidence 44554 4554 567778899999998765332 679999887775 45567888888754
No 122
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=76.65 E-value=0.42 Score=44.53 Aligned_cols=34 Identities=6% Similarity=-0.010 Sum_probs=31.4
Q ss_pred ccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 109 titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
...+.|.+++||+++|..|+ ..+++|++|+|++.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d 50 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID 50 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeec
Confidence 45688999999999999999 99999999999987
No 123
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=76.35 E-value=8.1 Score=33.77 Aligned_cols=65 Identities=15% Similarity=0.317 Sum_probs=51.9
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEE-eCCeecCCccccccccccCCCEEEEeeec
Q 005384 27 DSQTYTLRVDKQVPVPALKEQIASVTG---VLSEQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIeektG---IPpeqQRLI-fkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
+|+...++.+.+..+.-+.++-.+..+ -|++...|- -.|.+|+-++.+.|||+.++.+|.|.++.
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 678888888888887777777666544 677776665 34789999999999999999999998864
No 124
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=76.04 E-value=9.7 Score=32.16 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=36.9
Q ss_pred EEEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 005384 20 EIKIKTLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRG 65 (699)
Q Consensus 20 qItVKtl~GKt~tLeVd-psdTV~dLKekIeektGIPpeqQRLIfkG 65 (699)
.|+++. +|..+.+.+. ...+..+|+.+|.+++++.....+|.|..
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 466666 3677888888 99999999999999999887677777765
No 125
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=74.93 E-value=12 Score=33.89 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=48.9
Q ss_pred EEEEEeCCCcEEEEEec-----CCCCHHHHHHHHHHHhCCCC-CCeEEEeCCe-----ecCCccccccc-----cccCCC
Q 005384 20 EIKIKTLDSQTYTLRVD-----KQVPVPALKEQIASVTGVLS-EQQRLICRGK-----VLKDDQLLSAY-----HVEDGH 83 (699)
Q Consensus 20 qItVKtl~GKt~tLeVd-----psdTV~dLKekIeektGIPp-eqQRLIfkGK-----vLkDdkTLSdY-----GIqdGS 83 (699)
.|+|+. ++....|.+. ++.+..+|+++|.+.+.+++ ....|.|... .|.++.-|.++ ......
T Consensus 2 ~vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~ 80 (91)
T cd06398 2 VVKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLN 80 (91)
T ss_pred EEEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCc
Confidence 456666 5667777776 47999999999999999988 5667788753 34444444332 233577
Q ss_pred EEEEeeec
Q 005384 84 TLHMVVRQ 91 (699)
Q Consensus 84 TLhLVlRl 91 (699)
+|.|.++.
T Consensus 81 ~lrl~v~~ 88 (91)
T cd06398 81 PLRIDVTV 88 (91)
T ss_pred eEEEEEEE
Confidence 88877754
No 126
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=74.88 E-value=4.8 Score=45.05 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=53.7
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEE--eCCeecCC-ccccccccccCCCEE
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLI--CRGKVLKD-DQLLSAYHVEDGHTL 85 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpe-qQRLI--fkGKvLkD-dkTLSdYGIqdGSTL 85 (699)
.+-.|.||..+|+.+.+.++.+.||.+|+..|.....-.+. .+.|+ |--|.|.| +.||++.+|.+-..|
T Consensus 304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 34567888889999999999999999999999987664443 45555 44588855 589999999876544
No 127
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=73.73 E-value=14 Score=42.06 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=58.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC------CCCeEEE-eCCeecCCccccccccccCCCEEEEeeec
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVL------SEQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIP------peqQRLI-fkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
.+|+|... .+..++-+..+..|.+|...|.+..+-. ...-.|. .+|..|+.+++|.+.+|.||++|+|.-+.
T Consensus 3 ~RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 3 CRVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 57888774 4567888889999999999998887641 1233444 35789999999999999999999998755
Q ss_pred CCC
Q 005384 92 PVP 94 (699)
Q Consensus 92 pgg 94 (699)
...
T Consensus 82 ~~~ 84 (452)
T TIGR02958 82 ATE 84 (452)
T ss_pred CCC
Confidence 443
No 128
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=72.86 E-value=8.1 Score=35.28 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=45.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 30 TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 30 t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
.+...++-..++..||+.++.+.++..+...+...+..|+++++|-+-+|+-.-++.+.+...
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi~ 66 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQIK 66 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEEE
Confidence 345567778899999999999999999999888888779999999999999888888877643
No 129
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=71.54 E-value=17 Score=30.45 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=41.6
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
+|+.+.+ ....||.+|-+. .+++++..-+.++++.+..+.- ..+ +++||.|.++--..
T Consensus 6 NG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~~Vg 63 (65)
T PRK05863 6 NEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVTAVQ 63 (65)
T ss_pred CCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEeecc
Confidence 6776655 456787776654 5788888899999998754322 236 99999999886443
No 130
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=70.94 E-value=15 Score=30.54 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=48.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 30 TYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 30 t~tLeVdpsdTV~dLKekIeektGI--PpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
...+.+....||.+|.+++..++.- .....++..+|+.+.+ ...++-|++|+.|.++--..
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvs 75 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVS 75 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCC
Confidence 5677888999999999999887631 2366788899998888 36778889999999975443
No 131
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=69.90 E-value=0.38 Score=38.22 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=30.0
Q ss_pred ccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 109 titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
...+.|.++.||+.||.+++ ..|+|++.|+|+|.
T Consensus 11 ~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~ 45 (64)
T smart00213 11 TITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYK 45 (64)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 45678899999999999999 88999999999864
No 132
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=69.35 E-value=29 Score=32.15 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=53.0
Q ss_pred CcEEEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHh----C--CCCC-CeEEEeCCe--ecCCcccccccc-----ccC
Q 005384 17 TTIEIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVT----G--VLSE-QQRLICRGK--VLKDDQLLSAYH-----VED 81 (699)
Q Consensus 17 ~tMqItVKtl~-GKt~tLeVdpsdTV~dLKekIeekt----G--IPpe-qQRLIfkGK--vLkDdkTLSdYG-----Iqd 81 (699)
..+.|.|...+ ...+++.+++++++.+|.+.+..+. + .+++ +-.|--.|+ -|..+..|.+|. ++.
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~ 95 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKN 95 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhc
Confidence 45777777654 3568899999999999998887762 1 2222 456666675 466777777773 677
Q ss_pred CCEEEEeeec
Q 005384 82 GHTLHMVVRQ 91 (699)
Q Consensus 82 GSTLhLVlRl 91 (699)
|..++|++..
T Consensus 96 ~~~~~L~L~~ 105 (108)
T smart00144 96 GREPHLVLMT 105 (108)
T ss_pred CCCceEEEEe
Confidence 8888888764
No 133
>smart00455 RBD Raf-like Ras-binding domain.
Probab=69.28 E-value=12 Score=32.17 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=40.2
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 005384 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (699)
Q Consensus 21 ItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkG 65 (699)
+.|-..+|+...+.+.+..||.++-+++.++.++.++...|.+.|
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 456677899999999999999999999999999999988888755
No 134
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=68.81 E-value=14 Score=35.60 Aligned_cols=57 Identities=25% Similarity=0.372 Sum_probs=41.7
Q ss_pred EecC-CCCHHHHHHHHHHH----hCCCC------CCeEEEeCC-----------------eec---CCccccccccccCC
Q 005384 34 RVDK-QVPVPALKEQIASV----TGVLS------EQQRLICRG-----------------KVL---KDDQLLSAYHVEDG 82 (699)
Q Consensus 34 eVdp-sdTV~dLKekIeek----tGIPp------eqQRLIfkG-----------------KvL---kDdkTLSdYGIqdG 82 (699)
.|+. +.||.+||+.|.+. .+++| +..+|+++- .+| +++++|.+|||++.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 4776 99999999888765 34555 445665432 355 67788999999999
Q ss_pred CEEEEeee
Q 005384 83 HTLHMVVR 90 (699)
Q Consensus 83 STLhLVlR 90 (699)
..|-++.+
T Consensus 101 TEiSfF~~ 108 (122)
T PF10209_consen 101 TEISFFNM 108 (122)
T ss_pred ceeeeeCH
Confidence 98888765
No 135
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.26 E-value=7.5 Score=43.07 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=45.8
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC---Cee-----cCCccccccccccCCCEEEEe
Q 005384 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICR---GKV-----LKDDQLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 33 LeVdpsdTV~dLKekIeektGIPpeqQRLIfk---GKv-----LkDdkTLSdYGIqdGSTLhLV 88 (699)
.-|+-+-||.+||+++..+.|+.+.++||+|= ||. .+.++.|-.|+|++|+.+.+-
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 34556789999999999999999999999873 443 244688999999999988664
No 136
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=68.15 E-value=37 Score=28.50 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=39.9
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
+|+.+.+ ....||.+|.+. .++......+-.+++.+.. ....++-|++|+.|.++--.
T Consensus 6 Ng~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v 63 (66)
T PRK08053 6 NDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVI 63 (66)
T ss_pred CCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEc
Confidence 6776655 566789988865 3455556777888888742 23445568999999887544
No 137
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=67.33 E-value=32 Score=28.37 Aligned_cols=58 Identities=14% Similarity=0.270 Sum_probs=41.6
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
+|+.+ ++....||.+|-+. .+++.+..-+.++|+.+.... ..++-|++|+.|.++--.
T Consensus 6 NG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~~v 63 (66)
T PRK05659 6 NGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVHAL 63 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEEEe
Confidence 67765 45567888877654 578888888889998775432 445558999999887544
No 138
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=67.01 E-value=33 Score=31.16 Aligned_cols=75 Identities=24% Similarity=0.361 Sum_probs=50.3
Q ss_pred CCcEEEEEEeC-CCcEEEEEecCCCCHHHHHHHHHHH--hCCCCC----CeEEEeCCe--ecCCcccccccc-----ccC
Q 005384 16 ETTIEIKIKTL-DSQTYTLRVDKQVPVPALKEQIASV--TGVLSE----QQRLICRGK--VLKDDQLLSAYH-----VED 81 (699)
Q Consensus 16 ~~tMqItVKtl-~GKt~tLeVdpsdTV~dLKekIeek--tGIPpe----qQRLIfkGK--vLkDdkTLSdYG-----Iqd 81 (699)
...+.|.|... ....++|.|+.+.|+.+|..++..+ ...... +-.|--.|+ -|..+..|.+|. ++.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~ 93 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKR 93 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHC
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhc
Confidence 45688888887 4667899999999999998888776 222222 456666674 466788888884 567
Q ss_pred CCEEEEeee
Q 005384 82 GHTLHMVVR 90 (699)
Q Consensus 82 GSTLhLVlR 90 (699)
+-.++|++.
T Consensus 94 ~~~~~L~Lv 102 (106)
T PF00794_consen 94 GKDPHLVLV 102 (106)
T ss_dssp T--EEEEEE
T ss_pred CCCcEEEEE
Confidence 777887764
No 139
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=66.44 E-value=11 Score=39.40 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=53.5
Q ss_pred CCCCCcEEEEEEeCC--CcEEE----EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC----e--ecCCcccccccccc
Q 005384 13 ESSETTIEIKIKTLD--SQTYT----LRVDKQVPVPALKEQIASVTGVLSEQQRLICRG----K--VLKDDQLLSAYHVE 80 (699)
Q Consensus 13 e~s~~tMqItVKtl~--GKt~t----LeVdpsdTV~dLKekIeektGIPpeqQRLIfkG----K--vLkDdkTLSdYGIq 80 (699)
......+-||+|..+ .+++. +-|+.+++|.+|-..|.++.|+|++..-++|.- + .|+.+.+|..+.|.
T Consensus 63 ~~~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~ 142 (249)
T PF12436_consen 63 YDPSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQ 142 (249)
T ss_dssp --TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--
T ss_pred CCCCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccC
Confidence 344567999999875 33332 578899999999999999999999877777653 2 56888999999999
Q ss_pred CCCEEEEeeecC
Q 005384 81 DGHTLHMVVRQP 92 (699)
Q Consensus 81 dGSTLhLVlRlp 92 (699)
+|+.|.+=....
T Consensus 143 ~GdIi~fQ~~~~ 154 (249)
T PF12436_consen 143 DGDIICFQRAPS 154 (249)
T ss_dssp TTEEEEEEE--G
T ss_pred CCCEEEEEeccc
Confidence 999998766543
No 140
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=65.26 E-value=15 Score=32.06 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=39.7
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 005384 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (699)
Q Consensus 21 ItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkG 65 (699)
+.|-..+|+.-.+.|.+.+||.++-+++.++.++.++.-.|.+.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 456778999999999999999999999999999999888776654
No 141
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=62.72 E-value=0.91 Score=42.98 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=26.5
Q ss_pred cccccCCchhhcccccc------CCCCC--cchhHHHHH
Q 005384 112 SHVAPSVVIETFNLPDR------GDGVP--SEISQIVSA 142 (699)
Q Consensus 112 l~V~psdTVe~VK~~Iq------~eGIP--pdqQRLIfa 142 (699)
..+.+++||.+||.+|+ ++|+| +++|+|||+
T Consensus 20 ~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIys 58 (113)
T cd01814 20 KRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISA 58 (113)
T ss_pred cccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeC
Confidence 56789999999999997 35666 999999986
No 142
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=60.32 E-value=57 Score=28.13 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=29.0
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCC--CCCeEEE
Q 005384 28 SQTYTLRVDKQVPVPALKEQIASVTGVL--SEQQRLI 62 (699)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIeektGIP--peqQRLI 62 (699)
+...+|.|..++|..++-+.+.+|+++. ++...|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 5667799999999999999999999988 4444554
No 143
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=59.97 E-value=33 Score=28.51 Aligned_cols=59 Identities=14% Similarity=0.292 Sum_probs=42.2
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
+|+.+. +....||.+|.+++ +++.+...+.++|+.+..+ ...++-|++|+.|.++--..
T Consensus 5 Ng~~~~--~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~ 63 (65)
T cd00565 5 NGEPRE--VEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVG 63 (65)
T ss_pred CCeEEE--cCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEecc
Confidence 566554 55678999988775 4677888888999887543 33445689999998875443
No 144
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=59.55 E-value=21 Score=41.88 Aligned_cols=77 Identities=25% Similarity=0.401 Sum_probs=48.3
Q ss_pred CCcEEEEEEeCC--CcEEEEEecCCCCHHHHHHHHHHHhC--CC------CCCeEEEeC-C---e-ecCCc---------
Q 005384 16 ETTIEIKIKTLD--SQTYTLRVDKQVPVPALKEQIASVTG--VL------SEQQRLICR-G---K-VLKDD--------- 71 (699)
Q Consensus 16 ~~tMqItVKtl~--GKt~tLeVdpsdTV~dLKekIeektG--IP------peqQRLIfk-G---K-vLkDd--------- 71 (699)
-.+|.|+|-..+ ...+.+.|-..|||.++|+||-+..- .| +++.-|.+. | + .|+|.
T Consensus 187 ~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~ 266 (539)
T PF08337_consen 187 YKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGG 266 (539)
T ss_dssp S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETT
T ss_pred eEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCC
Confidence 345777765443 34578899999999999999976522 21 244444322 2 2 44432
Q ss_pred ----cccccccccCCCEEEEeeecC
Q 005384 72 ----QLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 72 ----kTLSdYGIqdGSTLhLVlRlp 92 (699)
.||+.|+|.+|++|-|+.+..
T Consensus 267 wkrLNTL~HY~V~dga~vaLv~k~~ 291 (539)
T PF08337_consen 267 WKRLNTLAHYKVPDGATVALVPKQH 291 (539)
T ss_dssp EEE--BHHHHT--TTEEEEEEES--
T ss_pred ceEeccHhhcCCCCCceEEEeeccc
Confidence 478999999999999999874
No 145
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=58.01 E-value=27 Score=31.31 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=33.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 005384 30 TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (699)
Q Consensus 30 t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkG 65 (699)
++.|.+.+..+..+|..+|.+|...+++.-+|.|+-
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 567889999999999999999999999999999974
No 146
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=56.96 E-value=64 Score=29.46 Aligned_cols=59 Identities=14% Similarity=0.258 Sum_probs=44.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEE------eCCeecCCccccccc
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLI------CRGKVLKDDQLLSAY 77 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQ-RLI------fkGKvLkDdkTLSdY 77 (699)
.-|+|-..||....|.|+..+|+.++-+++..|..+..+.- -|+ +=.+.|+|...|-++
T Consensus 3 ~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 3 QVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred eEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHH
Confidence 44677778999999999999999999999999998776543 333 113577888665443
No 147
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=56.52 E-value=37 Score=30.63 Aligned_cols=36 Identities=8% Similarity=0.248 Sum_probs=30.7
Q ss_pred EEEEEEeCCCcEEEEEecC--CCCHHHHHHHHHHHhCCC
Q 005384 19 IEIKIKTLDSQTYTLRVDK--QVPVPALKEQIASVTGVL 55 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdp--sdTV~dLKekIeektGIP 55 (699)
++|++.. +|.+..+.+++ +.+..+|+++|.+.+++.
T Consensus 1 V~vKaty-~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 1 VNLKVTY-NGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred CEEEEEE-CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 3566665 68888999998 779999999999999998
No 148
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=56.34 E-value=44 Score=28.82 Aligned_cols=52 Identities=17% Similarity=0.159 Sum_probs=38.7
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecCCcc
Q 005384 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLKDDQ 72 (699)
Q Consensus 21 ItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkG--KvLkDdk 72 (699)
+.|...+++...+.|.+..||.++-.++.++.++.++...+...| |.|..+.
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~ 56 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQ 56 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTS
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCC
Confidence 556678899999999999999999999999999999877665444 4554333
No 149
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=55.10 E-value=55 Score=27.94 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=36.6
Q ss_pred EEEEeCCCc----EEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEE-e---CC--eecCCc
Q 005384 21 IKIKTLDSQ----TYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLI-C---RG--KVLKDD 71 (699)
Q Consensus 21 ItVKtl~GK----t~tLeVdpsdTV~dLKekIeektGI--PpeqQRLI-f---kG--KvLkDd 71 (699)
|+|-..++. ...|.|...+|+.++-+.+.+++++ .+.+..|+ + .| +.|.|+
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~ 67 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDD 67 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTT
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCC
Confidence 444455555 7789999999999999999999998 33455663 2 23 467654
No 150
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=54.52 E-value=55 Score=27.17 Aligned_cols=59 Identities=12% Similarity=0.293 Sum_probs=41.4
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 26 l~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
++|+.+.+ ....||.+|.+++ +++++...+.++|+.+..+ ...++-|++|+.|.++--.
T Consensus 3 iNg~~~~~--~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V 61 (64)
T TIGR01683 3 VNGEPVEV--EDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFV 61 (64)
T ss_pred ECCeEEEc--CCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEec
Confidence 36666654 5677899988764 5667777778888877422 2345679999999887644
No 151
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=52.64 E-value=1.7 Score=34.17 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=31.9
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIf 141 (699)
..++.+.+.+.++++|..+|.+|. ..|+++++|+|.+
T Consensus 7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~ 44 (75)
T KOG0001|consen 7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIF 44 (75)
T ss_pred cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEE
Confidence 456778899999999999999999 8899999999554
No 152
>PRK07440 hypothetical protein; Provisional
Probab=52.28 E-value=1.1e+02 Score=26.38 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=44.5
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
+|+|+| +|+.+ ++....||.+|-+ ..++.++..-+.++|+.+.- ....++-+++||.|.++--.
T Consensus 4 ~m~i~v---NG~~~--~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v 67 (70)
T PRK07440 4 PITLQV---NGETR--TCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIV 67 (70)
T ss_pred ceEEEE---CCEEE--EcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEe
Confidence 466665 67764 4566788888775 35677777778888987742 23456668999999887544
No 153
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=51.30 E-value=43 Score=30.87 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=34.8
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe
Q 005384 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC 63 (699)
Q Consensus 23 VKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIf 63 (699)
++..+|++..+.|+.+.+..+|+.++.+.+++... ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 57778999999999999999999999999998876 55544
No 154
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=50.48 E-value=95 Score=25.45 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=37.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
+|+.+. +....||.+|.+.+ ++. ....+.++|+.+.... ..+.-+++|+.|.++--..
T Consensus 6 Ng~~~~--~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~ 63 (65)
T PRK06944 6 NQQTLS--LPDGATVADALAAY----GAR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVA 63 (65)
T ss_pred CCEEEE--CCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeecc
Confidence 666654 55678999888765 333 3456778888764322 3344588999999886443
No 155
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=49.05 E-value=58 Score=36.16 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=47.3
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCCCC
Q 005384 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (699)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpggpa 96 (699)
+|+.+. +....||.+|-+. .+++++..-+.++|+.+. .....++-|++||.|.++--..+++.
T Consensus 6 NGk~~e--l~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII~~VgGGs~ 68 (326)
T PRK11840 6 NGEPRQ--VPAGLTIAALLAE----LGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIVHFVGGGSD 68 (326)
T ss_pred CCEEEe--cCCCCcHHHHHHH----cCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEEEEecCCCC
Confidence 677654 4567788877654 578888888999999884 33456777999999999987777543
No 156
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=48.84 E-value=31 Score=41.67 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=37.9
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec
Q 005384 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL 68 (699)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvL 68 (699)
+...+.+-++++.|+..|++.|.+.+|+|.+.|.|+|.|...
T Consensus 323 ~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 323 QATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred cceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 567788899999999999999999999999999999997643
No 157
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=46.21 E-value=61 Score=33.28 Aligned_cols=104 Identities=23% Similarity=0.189 Sum_probs=50.4
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCC---CeEE--EeCCe---ecCCccccccccccCCCEEEEeeecCCCCCCC--
Q 005384 29 QTYTLRVDKQVPVPALKEQIASVTGVLSE---QQRL--ICRGK---VLKDDQLLSAYHVEDGHTLHMVVRQPVPSSSD-- 98 (699)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIeektGIPpe---qQRL--IfkGK---vLkDdkTLSdYGIqdGSTLhLVlRlpggpass-- 98 (699)
+.+.+-|.++.||.+|.+++.++.+++.+ ..|| ++++| .+..+..|..+ .+..++.+-.-....-...
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 35778899999999999999999998765 4455 35675 45667777665 3333332221111100000
Q ss_pred ---CCCCCC-----CC----CCccccccccCCchhhcccccc-CCCCCc
Q 005384 99 ---GTHNLP-----GT----SRSHGSHVAPSVVIETFNLPDR-GDGVPS 134 (699)
Q Consensus 99 ---~~qI~v-----~t----g~titl~V~psdTVe~VK~~Iq-~eGIPp 134 (699)
..-+.+ .. |-..-..|.++.++..+|..|+ +-|++.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 010111 11 2223367889999999999888 777755
No 158
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=44.93 E-value=9.7 Score=41.72 Aligned_cols=50 Identities=32% Similarity=0.430 Sum_probs=43.8
Q ss_pred eCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcccc
Q 005384 25 TLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLL 74 (699)
Q Consensus 25 tl~GKt~tLeVd-psdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTL 74 (699)
..+|.+..+.+. ....|..||.+|....+|++..|++.|.|..|+|+..+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 446888887777 78889999999999999999999999999999998444
No 159
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=44.36 E-value=1.2e+02 Score=25.78 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=39.8
Q ss_pred CCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 27 DSQTYTLRVDKQ-VPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 27 ~GKt~tLeVdps-dTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
+|+.+.+ ... .||.+|-+ ..+++++..-+.++++.+.-+ ...++-|++||.|.++.-.
T Consensus 6 NG~~~~~--~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~V 64 (67)
T PRK07696 6 NGNQIEV--PESVKTVAELLT----HLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFV 64 (67)
T ss_pred CCEEEEc--CCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEe
Confidence 6776654 443 57777665 356777777788899887432 3455668999999887644
No 160
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=44.29 E-value=69 Score=29.08 Aligned_cols=57 Identities=35% Similarity=0.492 Sum_probs=36.4
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-Ce------ecCCc---ccc--ccccccCCCEEEEeeec
Q 005384 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GK------VLKDD---QLL--SAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 33 LeVdpsdTV~dLKekIeektGIPpeqQRLIfk-GK------vLkDd---kTL--SdYGIqdGSTLhLVlRl 91 (699)
++++...||.+|-+.|++++ +..+-+|+.. |+ +|-++ ..| .+|.+++|+.|.++-..
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v 91 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTL 91 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCC
Confidence 34446789999999998876 3344455443 32 33233 234 46889999999987543
No 161
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=43.47 E-value=25 Score=32.81 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=23.7
Q ss_pred EEEeCCeecCCccccccccccCC--CEEEEeeecCCC
Q 005384 60 RLICRGKVLKDDQLLSAYHVEDG--HTLHMVVRQPVP 94 (699)
Q Consensus 60 RLIfkGKvLkDdkTLSdYGIqdG--STLhLVlRlpgg 94 (699)
.|-|.||.|..+++|++| |... .+|.+-+...+.
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivKl~~~g~ 38 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVKLQKRGQ 38 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEEeccCCC
Confidence 478999999999999999 4333 444444444443
No 162
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=43.45 E-value=1.9e+02 Score=25.03 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=31.6
Q ss_pred EEecC-CCCHHHHHHHHHHHhCC-----CCCCeEEEeCCeecCCccccccccccCCCEEEEee
Q 005384 33 LRVDK-QVPVPALKEQIASVTGV-----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 33 LeVdp-sdTV~dLKekIeektGI-----PpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
++++. ..||.+|++.|.+++.- .....++..+++... .++-|++|+.|-++-
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~-----~~~~l~dgDeVai~P 76 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFFP 76 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcC-----CCCCCCCCCEEEEeC
Confidence 44443 47999999999887631 112223334443322 245688999998874
No 163
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=43.20 E-value=2.3 Score=34.17 Aligned_cols=35 Identities=17% Similarity=0.366 Sum_probs=29.1
Q ss_pred CCccccccccCCchhhcccccc-CCCCCcchhHHHH
Q 005384 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (699)
Q Consensus 107 g~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIf 141 (699)
++.....+.++.+|+.||..|. ..|+|++.|+|+|
T Consensus 7 ~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~ 42 (69)
T cd01769 7 GKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY 42 (69)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 5555677788999999999999 7899999998854
No 164
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.93 E-value=8.7 Score=44.10 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=50.9
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeee
Q 005384 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 33 LeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
++.+...|=.+|..+|++++||+-...+.|.+||+|.-.+||.+-|++....+.+++.
T Consensus 54 ~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred hhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 4566777888999999999999999999999999999999999999988776666554
No 165
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=41.09 E-value=61 Score=29.46 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=42.1
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-----ecCCccccccc
Q 005384 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK-----VLKDDQLLSAY 77 (699)
Q Consensus 20 qItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGK-----vLkDdkTLSdY 77 (699)
+.+||. +|.+..+.+...-+...|++||+..+.+|+...-|.|=.. .|.++.-|.++
T Consensus 2 ~fKv~~-~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~ 63 (82)
T cd06397 2 QFKSSF-LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDF 63 (82)
T ss_pred eEEEEe-CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHH
Confidence 567766 5777788888889999999999999999988777766432 24444444444
No 166
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=40.93 E-value=93 Score=29.89 Aligned_cols=52 Identities=2% Similarity=0.182 Sum_probs=42.2
Q ss_pred CcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec
Q 005384 17 TTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL 68 (699)
Q Consensus 17 ~tMqItVKtl~G----Kt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvL 68 (699)
..+.|.+|..++ |.-.+.|++++|++.+-..|.+..+++..++-++|-..-.
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 557777777643 4556789999999999999999999999999888766544
No 167
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.40 E-value=2.4e+02 Score=26.56 Aligned_cols=76 Identities=24% Similarity=0.272 Sum_probs=47.5
Q ss_pred CcEEEEEEeCCC--------cEEEE--Eec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCCe------ec-C--Ccccc--
Q 005384 17 TTIEIKIKTLDS--------QTYTL--RVD-KQVPVPALKEQIASVTGVLSEQQRLICRGK------VL-K--DDQLL-- 74 (699)
Q Consensus 17 ~tMqItVKtl~G--------Kt~tL--eVd-psdTV~dLKekIeektGIPpeqQRLIfkGK------vL-k--DdkTL-- 74 (699)
+.+.|+|+.+.| |...+ +|. ...||.+|-.-|..++--.+++ -++.+|. +| . |-..|
T Consensus 3 ~~~~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie~r~~-lFi~~gsvrpGii~lINd~DWEllek 81 (101)
T KOG4146|consen 3 EAHEVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGKYIETRDS-LFIHHGSVRPGIIVLINDMDWELLEK 81 (101)
T ss_pred cceeEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHHHhcCCcc-eEeeCCcCcCcEEEEEeccchhhhcc
Confidence 457888888754 22223 332 4578999888888765444443 4455553 23 2 22344
Q ss_pred ccccccCCCEEEEeeecCC
Q 005384 75 SAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 75 SdYGIqdGSTLhLVlRlpg 93 (699)
.+|.+++|+.|.++-.+-+
T Consensus 82 edy~ledgD~ivfiSTlHG 100 (101)
T KOG4146|consen 82 EDYPLEDGDHIVFISTLHG 100 (101)
T ss_pred cccCcccCCEEEEEEeccC
Confidence 5899999999988765543
No 168
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=39.86 E-value=37 Score=30.44 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=30.7
Q ss_pred EEec-CCCCHHHHHHHHHH-HhCCCCC----CeEEEeCCee----cCCccccccccccCCCEEEEe
Q 005384 33 LRVD-KQVPVPALKEQIAS-VTGVLSE----QQRLICRGKV----LKDDQLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 33 LeVd-psdTV~dLKekIee-ktGIPpe----qQRLIfkGKv----LkDdkTLSdYGIqdGSTLhLV 88 (699)
+.++ ..+|+.+|-++|.+ +.|+... .-+++|.... -..+++|+++||.+|+.|.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 3444 47899999998754 5664432 3355555332 123589999999999988764
No 169
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=38.28 E-value=92 Score=27.96 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=41.6
Q ss_pred EEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCCccccccccccCCCEEEEeeec
Q 005384 21 IKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 21 ItVKtl~-GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIf--kGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
++|+..+ .+.+-|-. .++.+|+.|..+++.++.+..+|+. .|-.++|+.-+.. + ...|+.|++..
T Consensus 5 ~kv~~~~r~~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--L-p~nT~lm~L~~ 72 (78)
T PF02017_consen 5 FKVRNHDRSVKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--L-PDNTVLMLLEK 72 (78)
T ss_dssp EEEEETTSSCEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--S-SSSEEEEEEES
T ss_pred EEEecCCCCceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--C-CCCCEEEEECC
Confidence 4555554 23344444 6899999999999999977777665 5778876644433 2 34566666553
No 170
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=37.89 E-value=88 Score=27.72 Aligned_cols=62 Identities=16% Similarity=0.255 Sum_probs=39.3
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-CCCCCeEEEeC------CeecCCccccccccccCCCEEEEeeec
Q 005384 29 QTYTLRVDKQVPVPALKEQIASVTG-VLSEQQRLICR------GKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIeektG-IPpeqQRLIfk------GKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
++|-+-.+++.|+.+|+.+|.+++. +.|....|... |--|+.+-.+.+. ...+++|.++++.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~n 71 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILKN 71 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeee-eccCCEEEEEecC
Confidence 4555568899999999999999876 45544333211 2234444444443 3467888888763
No 171
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=36.79 E-value=9.7 Score=43.96 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=30.4
Q ss_pred cccccccCCchhhcccccc-CCCCCcchhHHHHHh
Q 005384 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (699)
Q Consensus 110 itl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfav 143 (699)
..+.|..+.+|+.||.+|. .-++++|+++|||+-
T Consensus 27 ~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaG 61 (493)
T KOG0010|consen 27 YEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAG 61 (493)
T ss_pred eeEecccchHHHHHHHHHHHhcCCChhHeeeeecC
Confidence 4578899999999999999 789999999999973
No 172
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.62 E-value=87 Score=34.22 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=54.8
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---ccccccccccCCCEEEE
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--fkGKvLkD---dkTLSdYGIqdGSTLhL 87 (699)
....|.||..||+++...+....++..+..-|..+.+...+-..|. |--+.+.+ .++|..+++..-++|.|
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 5578889999999999999999999999999999988766443333 44455632 37888888877766654
No 173
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=35.50 E-value=1.2e+02 Score=28.14 Aligned_cols=61 Identities=23% Similarity=0.435 Sum_probs=43.2
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCee---------cCCccccccccccCCCEEEE
Q 005384 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKV---------LKDDQLLSAYHVEDGHTLHM 87 (699)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQR-LIfkGKv---------LkDdkTLSdYGIqdGSTLhL 87 (699)
...++.|.|+++.|=.++|+.|++.+++.+..-. |+..|+. +..+..-++.-+..|..|.+
T Consensus 20 ~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~KR~~~k~~G~~~~~kka~V~l~~G~~i~~ 90 (94)
T COG0089 20 KENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKRAGVKRIGLRKDYKKAYVTLKEGQSIDF 90 (94)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCcceEEeccccccCcccceeEEEccCCCEEee
Confidence 3478999999999999999999999999998874 5566642 23333444444555555443
No 174
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=34.20 E-value=96 Score=29.10 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=28.1
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 005384 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS 56 (699)
Q Consensus 21 ItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPp 56 (699)
|+|-..+|.+..+.|....+-.++|.++-+|+|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 566677899999999999999999999999999887
No 175
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=32.75 E-value=1.2e+02 Score=29.36 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=49.5
Q ss_pred CCcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcccccccc---ccCCCEEEEee
Q 005384 16 ETTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYH---VEDGHTLHMVV 89 (699)
Q Consensus 16 ~~tMqItVKtl~---GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYG---IqdGSTLhLVl 89 (699)
++.|-|.|.... .|...+-|..+.||.+|...|.++.++.+++.-|..++.++..+.++++.- -.++-.|++..
T Consensus 25 PdrIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Y 104 (121)
T PTZ00380 25 PGHVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSV 104 (121)
T ss_pred CCccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEE
Confidence 344556664432 233334699999999999999999999999865556665666666765531 12344666665
Q ss_pred e
Q 005384 90 R 90 (699)
Q Consensus 90 R 90 (699)
.
T Consensus 105 s 105 (121)
T PTZ00380 105 R 105 (121)
T ss_pred c
Confidence 3
No 176
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=32.70 E-value=1.5e+02 Score=27.00 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=34.4
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCee
Q 005384 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKV 67 (699)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIeektGIPpeqQR-LIfkGKv 67 (699)
...+.|.|++..|=.++|+.|+..+++.+..-+ +++.||.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 468999999999999999999999999998774 5566654
No 177
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=31.76 E-value=63 Score=29.08 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=38.3
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCC-------CCeEEEeCCe-ecC------CccccccccccCCCEEEEe
Q 005384 33 LRVDKQVPVPALKEQIASVTGVLS-------EQQRLICRGK-VLK------DDQLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 33 LeVdpsdTV~dLKekIeektGIPp-------eqQRLIfkGK-vLk------DdkTLSdYGIqdGSTLhLV 88 (699)
|+|++++|+.+|-+.++++..+-. ..-.|++.+- .|+ =+++|.+. +.+|..|.+.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 679999999999999999844332 3334555442 232 24889999 9999988773
No 178
>PRK01777 hypothetical protein; Validated
Probab=30.86 E-value=2.8e+02 Score=25.49 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=43.0
Q ss_pred CcEEEEEEeCC-C--cEEEEEecCCCCHHHHHHHHHHHhCCCCC--C-----eEEEeCCeecCCccccccccccCCCEEE
Q 005384 17 TTIEIKIKTLD-S--QTYTLRVDKQVPVPALKEQIASVTGVLSE--Q-----QRLICRGKVLKDDQLLSAYHVEDGHTLH 86 (699)
Q Consensus 17 ~tMqItVKtl~-G--Kt~tLeVdpsdTV~dLKekIeektGIPpe--q-----QRLIfkGKvLkDdkTLSdYGIqdGSTLh 86 (699)
++|+|.|.... . +.+.+++....||.++-+.. |++.+ + ..+.-.||..+- ++-+++|+.|-
T Consensus 2 ~~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVe 72 (95)
T PRK01777 2 GKIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVE 72 (95)
T ss_pred CeeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEE
Confidence 36788877643 2 33567888999999876654 55554 2 244455665433 55678899999
Q ss_pred Eeeec
Q 005384 87 MVVRQ 91 (699)
Q Consensus 87 LVlRl 91 (699)
++-.+
T Consensus 73 IyrPL 77 (95)
T PRK01777 73 IYRPL 77 (95)
T ss_pred EecCC
Confidence 87544
No 179
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=30.76 E-value=1.5e+02 Score=26.50 Aligned_cols=53 Identities=23% Similarity=0.336 Sum_probs=40.1
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCCeecCCccccccccccCCCEEEEee
Q 005384 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI-fkGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
++.+.+.++...||+++-+ ..|+|..+-.++ .+|+...- +|-+++|+.|.+.-
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 3567788889999988765 489999888665 56776543 47788999998864
No 180
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=30.59 E-value=60 Score=36.41 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=51.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC-CCCCCeEEEeCC---eecC--CccccccccccCCCE
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG-VLSEQQRLICRG---KVLK--DDQLLSAYHVEDGHT 84 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektG-IPpeqQRLIfkG---KvLk--DdkTLSdYGIqdGST 84 (699)
-.|.||+.+|+.....+.++++|..|-.-++.... .+-+..+|+++= |.|. .+.||.++||.+-.+
T Consensus 278 t~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 278 TSIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred eEEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 34999999998877777889999988777766544 445677999886 6663 468999999998765
No 181
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=30.46 E-value=85 Score=31.51 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=36.7
Q ss_pred CcEEEEEEeCCCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccc
Q 005384 17 TTIEIKIKTLDSQTYTLRVDK-QVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAY 77 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdp-sdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdY 77 (699)
..|+++|+. | .+-++++. .+.+.++++..++.+.++-+ +..|+-++...|+.||
T Consensus 66 ~~veL~V~v--G-ri~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 66 EEVELTVKV--G-RIILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEEEEEE--e-EEEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh
Confidence 346777776 3 35577777 66677777666665533322 3469999999999999
No 182
>PLN02560 enoyl-CoA reductase
Probab=30.20 E-value=7.8 Score=42.19 Aligned_cols=31 Identities=10% Similarity=0.059 Sum_probs=27.5
Q ss_pred ccccccCCchhhcccccc-CCCC-CcchhHHHH
Q 005384 111 GSHVAPSVVIETFNLPDR-GDGV-PSEISQIVS 141 (699)
Q Consensus 111 tl~V~psdTVe~VK~~Iq-~eGI-PpdqQRLIf 141 (699)
+++++++.||++||..|+ +.++ ++++|||++
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~ 49 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTL 49 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEE
Confidence 578899999999999999 6676 899999986
No 183
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=29.61 E-value=1.1e+02 Score=36.14 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=57.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEE--eC----CeecCCccc----cccccccCCCEE
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLI--CR----GKVLKDDQL----LSAYHVEDGHTL 85 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPp-eqQRLI--fk----GKvLkDdkT----LSdYGIqdGSTL 85 (699)
..+-|+|-+-||....|.|+..+|+.++-+.+.+|..+-- +.-.|+ |. -+.++|+.. |+++.+..+..|
T Consensus 187 rklvVKvfseDgasksL~Vder~tardV~~lL~eKnH~~~d~~W~LvEh~P~L~iER~fEDHElVVEvls~W~~dseNK~ 266 (622)
T KOG3751|consen 187 RKLVVKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCADDEDWCLVEHYPHLQIERVFEDHELVVEVLSMWTQDSENKL 266 (622)
T ss_pred cceeEEEEccCCceeeEeecccccHHHHHHHHHHhhhhhcccceeeeeecchhhhhhhhhhHHHHHHHHhhcccCCCcee
Confidence 3456667777899999999999999999999999887655 344453 22 256788754 677888888888
Q ss_pred EEeeecCC
Q 005384 86 HMVVRQPV 93 (699)
Q Consensus 86 hLVlRlpg 93 (699)
.+..+..+
T Consensus 267 lF~k~~~K 274 (622)
T KOG3751|consen 267 LFRKNPAK 274 (622)
T ss_pred EEeecchh
Confidence 88766543
No 184
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=29.11 E-value=1.9e+02 Score=33.64 Aligned_cols=77 Identities=10% Similarity=0.167 Sum_probs=61.8
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EeCCeecCC---ccccccccccCCCEEEEeeec
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL--ICRGKVLKD---DQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRL--IfkGKvLkD---dkTLSdYGIqdGSTLhLVlRl 91 (699)
...+|.|+..+|..|+-.+..++-+..+|..|...-++.....-| .|--|+..| +++|.++.+.+...|.|+-+.
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 457899999999999988888888899999999888877766655 477777743 489999999998888777665
Q ss_pred CC
Q 005384 92 PV 93 (699)
Q Consensus 92 pg 93 (699)
..
T Consensus 393 r~ 394 (506)
T KOG2507|consen 393 RA 394 (506)
T ss_pred Cc
Confidence 44
No 185
>CHL00030 rpl23 ribosomal protein L23
Probab=29.00 E-value=1.4e+02 Score=27.50 Aligned_cols=39 Identities=23% Similarity=0.167 Sum_probs=32.9
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCe
Q 005384 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGK 66 (699)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIeektGIPpeqQR-LIfkGK 66 (699)
...|.+.|+.+.+=.++|+.|+..+++.+..-+ ++..||
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k 58 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRK 58 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCC
Confidence 468999999999999999999999999887764 445554
No 186
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=28.84 E-value=1.1e+02 Score=28.25 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=36.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQ 59 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQ 59 (699)
++|.|-..+|.++.++|..+++..++-+.+..+.++|.+-.
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~ 42 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQ 42 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHH
Confidence 46777778899999999999999999999999999987654
No 187
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=28.54 E-value=3.8e+02 Score=25.38 Aligned_cols=74 Identities=15% Similarity=0.090 Sum_probs=48.2
Q ss_pred CCcEEEEEEeCC-C-----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEeCCeecCCcccccc----ccccCCCE
Q 005384 16 ETTIEIKIKTLD-S-----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLICRGKVLKDDQLLSA----YHVEDGHT 84 (699)
Q Consensus 16 ~~tMqItVKtl~-G-----Kt~tLeVdpsdTV~dLKekIeektGIPpeqQ-RLIfkGKvLkDdkTLSd----YGIqdGST 84 (699)
++.|-|.|.... + +.-.+-|..++||.+|+..|.++..+.+++- -|..++.....+.++++ |+-+ +..
T Consensus 22 p~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~-DGf 100 (112)
T cd01611 22 PDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDE-DGF 100 (112)
T ss_pred CCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCC-CCE
Confidence 345666665432 1 1233459999999999999999999888774 45555555466666654 3333 556
Q ss_pred EEEeee
Q 005384 85 LHMVVR 90 (699)
Q Consensus 85 LhLVlR 90 (699)
|+|...
T Consensus 101 Lyl~Ys 106 (112)
T cd01611 101 LYMTYS 106 (112)
T ss_pred EEEEEe
Confidence 777654
No 188
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=28.06 E-value=1.3e+02 Score=31.75 Aligned_cols=44 Identities=27% Similarity=0.433 Sum_probs=33.4
Q ss_pred EEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE
Q 005384 19 IEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI 62 (699)
Q Consensus 19 MqItVKtl~---GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI 62 (699)
+.|+++... ...|.++++..+|-.+|-++|+++.++.|+..||.
T Consensus 177 v~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 177 VEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp EEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred EEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 677777643 34799999999999999999999999999999885
No 189
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=28.03 E-value=13 Score=41.12 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=34.3
Q ss_pred CCCCCccccccccCCchhhcccccc-CCC--CCcchhHHHHHh
Q 005384 104 PGTSRSHGSHVAPSVVIETFNLPDR-GDG--VPSEISQIVSAV 143 (699)
Q Consensus 104 v~tg~titl~V~psdTVe~VK~~Iq-~eG--IPpdqQRLIfav 143 (699)
++.+.++++.|.|+++|..+|.+|. ..| .|..+|.|||+.
T Consensus 7 tL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~G 49 (340)
T KOG0011|consen 7 TLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSG 49 (340)
T ss_pred eccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecc
Confidence 3556778899999999999999999 444 999999999974
No 190
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=27.82 E-value=98 Score=31.02 Aligned_cols=54 Identities=17% Similarity=0.310 Sum_probs=37.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccc
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAY 77 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdY 77 (699)
..|+++|+. | .+-+++...+.+.++++...+.+-++-+ +..||-+++..|+.||
T Consensus 65 ~~veL~V~V--G-rI~le~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 65 EDVELRVQV--G-RIILELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEEEEEEE--e-EEEEEecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhh
Confidence 346777776 3 3556776777777777766665543322 4568899999999998
No 191
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=26.30 E-value=1.5e+02 Score=26.69 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCCccccccccccCCCEEEEeee
Q 005384 38 QVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 38 sdTV~dLKekIeektGIPpeqQRLI--fkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
-.+.++|+.|..+++.++....+|+ -.|-.++|+.-+.. +. ..|+.|++.
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~t--Lp-~nT~l~~l~ 71 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQT--LP-DNTVLMLLE 71 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhc--CC-CCcEEEEEC
Confidence 4579999999999999976665555 45888877754433 23 345545543
No 192
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=25.89 E-value=4.7e+02 Score=23.62 Aligned_cols=71 Identities=8% Similarity=0.131 Sum_probs=44.7
Q ss_pred EEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCee-c-CCcccccc---ccccCCCEEEEee
Q 005384 19 IEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKV-L-KDDQLLSA---YHVEDGHTLHMVV 89 (699)
Q Consensus 19 MqItVKtl~G----Kt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKv-L-kDdkTLSd---YGIqdGSTLhLVl 89 (699)
+.|.+|.... +.-.+-|..+.||.+|...|.++.++.+++--.+|-+.. + ..+.++++ +- .++..|++..
T Consensus 2 v~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~Y 80 (87)
T cd01612 2 VTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVSY 80 (87)
T ss_pred eEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEEE
Confidence 4455555421 233456999999999999999999998876444444443 3 34455443 22 4566777665
Q ss_pred e
Q 005384 90 R 90 (699)
Q Consensus 90 R 90 (699)
.
T Consensus 81 s 81 (87)
T cd01612 81 C 81 (87)
T ss_pred e
Confidence 4
No 193
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=25.73 E-value=81 Score=39.05 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=49.0
Q ss_pred CCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCCcccccccc-c-cCCCEEEEe
Q 005384 27 DSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYH-V-EDGHTLHMV 88 (699)
Q Consensus 27 ~GKt~tLeVd-psdTV~dLKekIeektGIPpeqQRLIfk-GKvLkDdkTLSdYG-I-qdGSTLhLV 88 (699)
.|+.++++.+ ...|+.+||..|.+++|+-..+|.|+-. |.++..++.|..|. . .+-+-|+++
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 3677777776 4688999999999999999999987765 67888899999987 2 344556666
No 194
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=25.32 E-value=1.7e+02 Score=26.45 Aligned_cols=40 Identities=13% Similarity=0.023 Sum_probs=35.1
Q ss_pred EEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE
Q 005384 22 KIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL 61 (699)
Q Consensus 22 tVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRL 61 (699)
.|...+|+...+-|.+.+|+.++-+.+.++.++.|.+--|
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~L 42 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYL 42 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHhee
Confidence 4667889999999999999999999999999999976533
No 195
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=24.45 E-value=1.2e+02 Score=27.49 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=35.1
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCeecC
Q 005384 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKVLK 69 (699)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIeektGIPpeqQR-LIfkGKvLk 69 (699)
..+.+.|++..|=.++|+.|+..+++.+...+ +++.||.-.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceE
Confidence 57999999999999999999999999997775 567777543
No 196
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=24.14 E-value=2.1e+02 Score=26.12 Aligned_cols=46 Identities=9% Similarity=0.174 Sum_probs=35.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICRG 65 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpe-qQRLIfkG 65 (699)
++|++.. +|..+.+.+++..+-++|.+++.+.+....+ ...+.|..
T Consensus 1 i~~K~~y-~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~D 47 (83)
T cd06404 1 VRVKAAY-NGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWID 47 (83)
T ss_pred CeEEEEe-cCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 3566666 6888999999999999999999999998664 34555543
No 197
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=23.57 E-value=1.7e+02 Score=26.14 Aligned_cols=50 Identities=12% Similarity=0.260 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCCccccccccccCCCEEEEeee
Q 005384 38 QVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 38 sdTV~dLKekIeektGIPpeqQRLI--fkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
-.+.++|+.|..+++.++....+|+ -.|-.++|+.-+.. +. ..|+.|++.
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t--Lp-~nt~l~~L~ 69 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT--LP-DNTELMALE 69 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc--CC-CCcEEEEEc
Confidence 4579999999999999996666654 46888877754433 33 345545543
No 198
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=23.17 E-value=5e+02 Score=22.60 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=40.0
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeee
Q 005384 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
+|+.+ ++....|+.+|-++ .+++++.--+.++|..+..+ ...++-+++|+.|.++.-
T Consensus 8 ng~~~--e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 8 NGKEV--EIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRV 64 (68)
T ss_pred CCEEE--EcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEe
Confidence 36654 55556899988754 67888888888999877532 234666888898887753
No 199
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=22.93 E-value=1.7e+02 Score=25.91 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=22.1
Q ss_pred EEEeCCCcE-EEEEec-CCCCHHHHHHHHHHHhCC
Q 005384 22 KIKTLDSQT-YTLRVD-KQVPVPALKEQIASVTGV 54 (699)
Q Consensus 22 tVKtl~GKt-~tLeVd-psdTV~dLKekIeektGI 54 (699)
+-|....+. ..|.++ ...+|.+||.+|.++.++
T Consensus 2 ~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 2 HYKFKSQKDYDTITFDGTSISVFDLKREIIEKKKL 36 (74)
T ss_dssp EEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT-
T ss_pred eEEecccCCccEEEECCCeeEHHHHHHHHHHHhCC
Confidence 444444443 346776 578999999999887665
No 200
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=22.54 E-value=3.3e+02 Score=24.55 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=44.2
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCCccccccccccCCCEEEEe
Q 005384 32 TLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 32 tLeVdpsdTV~dLKekIeektGIPpeqQRLIfk-GKvLkDdkTLSdYGIqdGSTLhLV 88 (699)
.+.|........+-+..++.+.+++..--+|.+ |--+...++..+.-++.|+.|.|+
T Consensus 19 v~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 19 VISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred EEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 367877787888888889999999988888766 677888899999999999999874
No 201
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=21.94 E-value=3.3e+02 Score=23.61 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=36.8
Q ss_pred EEEEEEe-CCCcEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEE--e-CC--eecCCc
Q 005384 19 IEIKIKT-LDSQTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLI--C-RG--KVLKDD 71 (699)
Q Consensus 19 MqItVKt-l~GKt~tLeVdpsdTV~dLKekIeektGIPp--eqQRLI--f-kG--KvLkDd 71 (699)
++|+.-. .++...+|.|..++|+.++-+.+.+++++.. +.-.|+ + .| +.|.|+
T Consensus 5 lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~ 65 (90)
T smart00314 5 LRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDD 65 (90)
T ss_pred EEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCC
Confidence 4555433 2356678999999999999999999999875 344443 3 34 456543
No 202
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=21.65 E-value=5e+02 Score=23.26 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=37.2
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 005384 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (699)
Q Consensus 23 VKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkG 65 (699)
|-..||+.-.+.+.+.+||.++-.++.++.|+.++.--++.-|
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g 46 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVG 46 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEec
Confidence 4456888888999999999999999999999999888776655
No 203
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=21.38 E-value=2.1e+02 Score=25.86 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=38.8
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE--EEeCCeecCCccccccccccCCCEEEEee
Q 005384 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR--LICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 21 ItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQR--LIfkGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
++|+..+. ....-|- -.+.++|+.|..+++.++...-+ |.-.|..++|+.-+.. +.++..+ |++
T Consensus 5 fkV~~~~r-~~k~GV~-A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~--LpdnT~l-m~L 70 (78)
T cd06539 5 FRVSNHDR-SSRRGVM-ASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQT--LGDNTHF-MVL 70 (78)
T ss_pred EEEecCCC-CceEEEE-ecCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhh--CCCCCEE-EEE
Confidence 45555432 2222232 35799999999999999865444 4566888877654433 3344444 444
No 204
>KOG4261 consensus Talin [Cytoskeleton]
Probab=20.69 E-value=1.3e+02 Score=37.30 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=69.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEEe------CCeecCCccccccccccCCCEEEEee
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG---VLSEQQRLIC------RGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektG---IPpeqQRLIf------kGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
+.++|... +-+.++.++|+.+|.+--+.|.+++- +-+.+..|+. +|-.|+..++|.+|.+.++++|..-.
T Consensus 4 lsl~i~~~-~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~ 82 (1003)
T KOG4261|consen 4 LSLKISSA-NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKR 82 (1003)
T ss_pred eEEEEEec-ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhh
Confidence 44555543 45567889999999997777766654 1144444442 34578899999999999999986543
Q ss_pred ecCCCCCCCCCCCCCCCCCccccccccCCchhhcccccc-CCCCCc
Q 005384 90 RQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPS 134 (699)
Q Consensus 90 Rlpggpass~~qI~v~tg~titl~V~psdTVe~VK~~Iq-~eGIPp 134 (699)
+... ..+-...|.-.+..|+-+.+|..+++-|. +.||..
T Consensus 83 k~r~------lkvrmldg~vkti~vd~sq~v~~L~~~ic~~igItn 122 (1003)
T KOG4261|consen 83 KQRP------LKVRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITN 122 (1003)
T ss_pred hccc------ceeeecccccceeeecccccHHHHHHHHHhccCccc
Confidence 3221 11222445555666777777777766666 666644
No 205
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=20.66 E-value=1.1e+02 Score=28.55 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=34.4
Q ss_pred cEEEEEec---CCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-------ec-C--Ccccc--ccccccCCCEEEEeeecCC
Q 005384 29 QTYTLRVD---KQVPVPALKEQIASVTGVLSEQQRLICRGK-------VL-K--DDQLL--SAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 29 Kt~tLeVd---psdTV~dLKekIeektGIPpeqQRLIfkGK-------vL-k--DdkTL--SdYGIqdGSTLhLVlRlpg 93 (699)
|.+.+++. ...||.+|-..|++..- .++--|+..+. +| . |-..+ .+|-|+++++|.++-.+-+
T Consensus 18 k~h~v~l~~~~~~~ti~~Li~~l~~nll--~~r~elF~~~~~vrPGILvLINd~DwEl~g~~~y~l~~~D~I~FiSTLHG 95 (96)
T PF09138_consen 18 KKHKVSLPSDGEPATIKDLIDYLRDNLL--KERPELFLEGGSVRPGILVLINDADWELLGEEDYVLKDGDNITFISTLHG 95 (96)
T ss_dssp SEEEEEE-SSCSC-BHHHHHHHHCCCT---SSGHHHHBSSSSB-TTEEEEETTCEHHHHTCCCSB--TTEEEEEEETTT-
T ss_pred eeEEEEcCCCCCCcCHHHHHHHHHHhcc--CCCHhHEecCCeEcCcEEEEEcCccceeecCcceEcCCCCEEEEEccCCC
Confidence 66777777 67888888877766432 22333333332 22 2 22333 4699999999999865543
No 206
>PF11388 DotA: Phagosome trafficking protein DotA; InterPro: IPR021528 DotA is essential for intracellular growth in Legionella []. DotA is thought to play an important role in regulating initial phagosome trafficking decisions either upon or immediately after macrophage uptake [].
Probab=20.44 E-value=43 Score=31.22 Aligned_cols=13 Identities=69% Similarity=1.027 Sum_probs=8.6
Q ss_pred CccccCCCCCCCCC
Q 005384 371 NPLMVQPLPFQPGT 384 (699)
Q Consensus 371 Npimvqp~p~q~g~ 384 (699)
|-|||| +|.|||.
T Consensus 89 NsmmvQ-lPGQPGi 101 (105)
T PF11388_consen 89 NSMMVQ-LPGQPGI 101 (105)
T ss_pred cceEEe-cCCCCCC
Confidence 667775 5777764
Done!