Query 005384
Match_columns 699
No_of_seqs 287 out of 1401
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 23:49:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u30_A Ubiquitin, linear DI-ub 99.9 5.4E-23 1.9E-27 195.3 5.2 126 12-142 14-142 (172)
2 3rt3_B Ubiquitin-like protein 99.9 9.3E-23 3.2E-27 190.5 4.6 120 18-142 2-127 (159)
3 3b08_A Polyubiquitin-C, ubiqui 99.8 4.7E-21 1.6E-25 175.5 4.5 119 19-142 1-122 (152)
4 3phx_B Ubiquitin-like protein 99.8 2.2E-18 7.5E-23 143.6 10.1 77 17-93 3-79 (79)
5 4dwf_A HLA-B-associated transc 99.7 3.6E-18 1.2E-22 145.7 10.4 80 16-96 3-82 (90)
6 3dbh_I NEDD8; cell cycle, acti 99.7 4.1E-18 1.4E-22 143.8 10.2 83 12-94 6-88 (88)
7 4hcn_B Polyubiquitin, ubiquiti 99.7 2.6E-18 8.9E-23 150.2 9.3 82 13-94 17-98 (98)
8 3v6c_B Ubiquitin; structural g 99.7 1.1E-17 3.6E-22 143.9 10.5 81 12-92 11-91 (91)
9 3plu_A Ubiquitin-like modifier 99.7 8.7E-18 3E-22 148.8 9.6 76 14-89 17-92 (93)
10 1wy8_A NP95-like ring finger p 99.7 2.6E-17 9E-22 139.9 11.7 82 15-96 4-87 (89)
11 4fbj_B NEDD8; effector-HOST ta 99.7 9.8E-18 3.4E-22 143.9 9.1 77 19-95 1-77 (88)
12 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 2.5E-17 8.7E-22 139.2 10.9 80 15-94 4-83 (87)
13 1ttn_A DC-UBP, dendritic cell- 99.7 1.6E-17 5.5E-22 147.5 9.6 86 9-94 14-99 (106)
14 1ndd_A NEDD8, protein (ubiquit 99.7 2.2E-17 7.7E-22 134.6 9.5 76 19-94 1-76 (76)
15 1wx8_A Riken cDNA 4931431F19; 99.7 2.1E-17 7.3E-22 143.0 9.8 84 12-96 11-94 (96)
16 3mtn_B UBA80, ubcep1, ubiquiti 99.7 2.7E-17 9.2E-22 137.4 9.9 78 17-94 2-79 (85)
17 4eew_A Large proline-rich prot 99.7 2.4E-17 8.1E-22 140.2 9.7 76 14-90 13-88 (88)
18 3n3k_B Ubiquitin; hydrolase, p 99.7 1.6E-17 5.6E-22 139.0 8.3 79 17-95 2-80 (85)
19 2dzi_A Ubiquitin-like protein 99.7 3.5E-17 1.2E-21 135.8 10.2 79 14-92 3-81 (81)
20 1uh6_A Ubiquitin-like 5; beta- 99.7 1.8E-17 6.2E-22 148.3 8.9 80 10-89 20-99 (100)
21 2uyz_B Small ubiquitin-related 99.7 2.3E-17 7.9E-22 137.4 8.8 78 17-94 2-79 (79)
22 2wyq_A HHR23A, UV excision rep 99.7 4.6E-17 1.6E-21 136.8 10.2 78 16-93 3-83 (85)
23 3a9j_A Ubiquitin; protein comp 99.7 4.8E-17 1.7E-21 132.7 10.0 76 19-94 1-76 (76)
24 2hj8_A Interferon-induced 17 k 99.7 3.2E-17 1.1E-21 140.5 9.2 79 17-95 3-81 (88)
25 1wyw_B Ubiquitin-like protein 99.7 3.3E-17 1.1E-21 143.3 9.4 83 12-94 15-97 (97)
26 2faz_A Ubiquitin-like containi 99.7 4.8E-17 1.7E-21 134.9 9.6 75 18-92 2-78 (78)
27 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 4.9E-17 1.7E-21 140.1 9.9 77 19-95 2-78 (96)
28 1wgd_A Homocysteine-responsive 99.7 4.8E-17 1.6E-21 140.5 9.6 81 16-96 5-91 (93)
29 1wx7_A Ubiquilin 3; ubiquitin- 99.7 1.6E-16 5.4E-21 140.7 12.7 84 14-98 13-96 (106)
30 3m62_B UV excision repair prot 99.7 2.3E-17 7.9E-22 146.9 7.3 78 18-95 1-78 (106)
31 2kk8_A Uncharacterized protein 99.7 6.1E-17 2.1E-21 138.8 8.8 75 16-90 8-83 (84)
32 2kan_A Uncharacterized protein 99.7 1.1E-16 3.8E-21 139.8 10.1 81 14-95 11-92 (94)
33 1uel_A HHR23B, UV excision rep 99.7 2E-16 6.7E-21 137.6 11.6 76 19-94 1-79 (95)
34 2kdi_A Ubiquitin, vacuolar pro 99.7 4.8E-17 1.6E-21 146.9 7.7 101 17-122 8-113 (114)
35 2l7r_A Ubiquitin-like protein 99.7 7.7E-17 2.6E-21 140.0 8.1 79 14-94 15-93 (93)
36 1sif_A Ubiquitin; hydrophobic 99.7 1.2E-16 4.1E-21 137.2 8.9 77 18-94 9-85 (88)
37 3vdz_A Ubiquitin-40S ribosomal 99.7 2.2E-16 7.5E-21 141.6 10.8 79 16-94 33-111 (111)
38 1wia_A Hypothetical ubiquitin- 99.7 2.8E-16 9.5E-21 136.0 10.8 81 13-96 2-83 (95)
39 4a20_A Ubiquitin-like protein 99.7 1.1E-16 3.9E-21 142.0 8.5 78 15-92 16-97 (98)
40 1yqb_A Ubiquilin 3; structural 99.7 2.5E-16 8.5E-21 139.0 10.1 81 14-95 18-98 (100)
41 2bwf_A Ubiquitin-like protein 99.7 2.7E-16 9.1E-21 129.4 9.5 74 17-91 3-76 (77)
42 2lxa_A Ubiquitin-like protein 99.7 7.3E-17 2.5E-21 140.3 6.4 74 18-91 1-78 (87)
43 1v5o_A 1700011N24RIK protein; 99.6 3E-16 1E-20 138.4 9.7 83 16-98 5-92 (102)
44 2klc_A Ubiquilin-1; ubiquitin- 99.6 5.1E-16 1.7E-20 137.1 10.6 80 14-94 21-100 (101)
45 1yx5_B Ubiquitin; proteasome, 99.6 4.8E-16 1.7E-20 135.2 9.9 76 19-94 1-76 (98)
46 1v2y_A 3300001G02RIK protein; 99.6 2.5E-16 8.7E-21 141.8 8.3 80 15-94 4-99 (105)
47 3b1l_X E3 ubiquitin-protein li 99.4 1.5E-17 5.1E-22 137.1 0.0 75 19-93 1-75 (76)
48 1j8c_A Ubiquitin-like protein 99.6 6.5E-16 2.2E-20 142.0 10.8 81 16-97 30-110 (125)
49 1wgh_A Ubiquitin-like 3, HCG-1 99.6 1.2E-15 4.1E-20 139.6 11.5 84 11-94 9-102 (116)
50 2ojr_A Ubiquitin; lanthide-bin 99.6 1.1E-15 3.8E-20 136.7 10.9 79 16-94 33-111 (111)
51 3rt3_B Ubiquitin-like protein 99.6 9.8E-16 3.3E-20 143.0 10.5 79 16-94 79-157 (159)
52 3l0w_B Monoubiquitinated proli 99.6 1.7E-15 5.7E-20 145.6 10.7 77 19-95 1-77 (169)
53 1we6_A Splicing factor, putati 99.6 1.3E-15 4.4E-20 136.1 9.0 79 16-94 25-107 (111)
54 1wju_A NEDD8 ultimate buster-1 99.6 1.8E-15 6.1E-20 135.4 9.0 75 19-94 16-94 (100)
55 1wxv_A BAG-family molecular ch 99.6 3.6E-15 1.2E-19 128.3 10.6 78 15-93 4-87 (92)
56 1x1m_A Ubiquitin-like protein 99.6 2.6E-15 8.9E-20 133.7 9.6 80 15-94 9-103 (107)
57 2gow_A HCG-1 protein, ubiquiti 99.6 2.7E-15 9.1E-20 138.8 9.9 83 12-94 11-103 (125)
58 1v86_A DNA segment, CHR 7, way 99.6 3.2E-15 1.1E-19 130.7 9.6 80 12-93 11-90 (95)
59 1v5t_A 8430435I17RIK protein; 99.6 2.5E-15 8.4E-20 129.8 8.5 77 15-92 4-84 (90)
60 1wgg_A Ubiquitin carboxyl-term 99.6 4.9E-15 1.7E-19 130.0 10.4 77 15-93 4-81 (96)
61 2fnj_B Transcription elongatio 99.6 2.5E-15 8.6E-20 138.1 7.5 70 19-90 3-80 (118)
62 2kdb_A Homocysteine-responsive 99.6 2.2E-15 7.4E-20 133.9 6.9 75 14-88 19-99 (99)
63 1se9_A Ubiquitin family; ubiqu 99.6 6E-15 2E-19 137.0 9.8 81 14-94 12-106 (126)
64 3m63_B Ubiquitin domain-contai 99.6 1.1E-15 3.7E-20 135.3 4.5 75 16-91 26-100 (101)
65 2daf_A FLJ35834 protein; hypot 99.6 2.5E-14 8.7E-19 131.4 13.7 83 11-93 8-91 (118)
66 3q3f_A Ribonuclease/ubiquitin 99.6 5.1E-15 1.8E-19 145.4 9.5 79 16-94 103-181 (189)
67 3u30_A Ubiquitin, linear DI-ub 99.6 6.1E-15 2.1E-19 139.9 9.1 78 17-94 95-172 (172)
68 4ajy_B Transcription elongatio 99.6 4.7E-15 1.6E-19 136.3 7.9 73 19-91 1-81 (118)
69 1we7_A SF3A1 protein; structur 99.6 1.2E-14 4.1E-19 130.7 10.1 78 17-94 24-111 (115)
70 3b08_A Polyubiquitin-C, ubiqui 99.5 1.4E-14 4.6E-19 132.6 10.5 78 17-94 75-152 (152)
71 3u5e_m 60S ribosomal protein L 99.5 4.6E-16 1.6E-20 142.5 0.0 76 19-94 1-76 (128)
72 4dbg_A Ranbp-type and C3HC4-ty 99.5 2.4E-14 8.4E-19 129.1 10.0 79 14-92 20-101 (105)
73 2kd0_A LRR repeats and ubiquit 99.5 3.7E-14 1.3E-18 121.5 10.1 74 16-90 10-83 (85)
74 3u5c_f 40S ribosomal protein S 99.5 2.8E-15 9.5E-20 142.6 0.0 77 19-95 1-77 (152)
75 1oqy_A HHR23A, UV excision rep 99.5 2.9E-14 1E-18 152.3 7.6 80 15-94 4-87 (368)
76 2dzm_A FAS-associated factor 1 99.5 9.8E-14 3.3E-18 123.8 9.6 75 18-93 8-84 (100)
77 2dzj_A Synaptic glycoprotein S 99.4 1.3E-13 4.6E-18 119.5 7.4 72 16-87 8-85 (88)
78 2kjr_A CG11242; UBL, ubiquitin 99.4 3.2E-13 1.1E-17 119.1 9.7 76 13-88 10-93 (95)
79 4b6w_A Tubulin-specific chaper 99.4 1.4E-13 4.7E-18 119.3 6.8 75 18-92 2-85 (86)
80 3ai5_A Yeast enhanced green fl 99.4 3.2E-13 1.1E-17 141.4 9.8 80 13-92 228-307 (307)
81 1wf9_A NPL4 family protein; be 99.4 3.8E-13 1.3E-17 120.0 8.8 76 17-93 6-97 (107)
82 2kj6_A Tubulin folding cofacto 99.4 1E-12 3.5E-17 116.4 9.7 76 15-90 11-95 (97)
83 2io1_B Small ubiquitin-related 99.4 1E-12 3.4E-17 115.7 8.8 81 14-94 3-83 (94)
84 1v6e_A Cytoskeleton-associated 99.4 1.3E-12 4.5E-17 113.8 9.0 76 16-91 5-88 (95)
85 1t0y_A Tubulin folding cofacto 99.3 2.9E-12 1E-16 116.9 10.2 76 17-92 5-88 (122)
86 2xzm_9 RPS31E; ribosome, trans 99.3 1.1E-13 3.6E-18 136.3 0.0 72 19-95 1-72 (189)
87 2io0_B Small ubiquitin-related 99.3 1.4E-11 4.9E-16 107.9 10.2 79 16-94 3-81 (91)
88 1wz0_A Ubiquitin-like protein 99.3 2.5E-11 8.6E-16 108.9 11.5 81 15-95 21-101 (104)
89 2d07_B Ubiquitin-like protein 99.3 1.4E-11 4.7E-16 108.0 9.5 79 15-93 14-92 (93)
90 2kzr_A Ubiquitin thioesterase 99.2 1E-11 3.4E-16 106.2 6.5 72 19-91 1-78 (86)
91 3shq_A UBLCP1; phosphatase, hy 99.2 9.8E-12 3.3E-16 130.5 7.8 76 16-92 3-81 (320)
92 2k8h_A Small ubiquitin protein 99.2 4.6E-11 1.6E-15 108.4 10.5 82 13-94 21-102 (110)
93 2eke_C Ubiquitin-like protein 99.2 5.2E-11 1.8E-15 107.5 10.5 81 12-93 25-105 (106)
94 1wm3_A Ubiquitin-like protein 99.2 4.8E-11 1.7E-15 99.4 9.3 72 18-89 1-72 (72)
95 3a4r_A Nfatc2-interacting prot 99.2 1.2E-10 4.2E-15 98.9 10.3 74 15-88 4-78 (79)
96 1wjn_A Tubulin-folding protein 99.0 7.2E-10 2.5E-14 96.7 9.3 78 15-92 6-94 (97)
97 3kyd_D Small ubiquitin-related 98.8 1.6E-08 5.6E-13 92.6 10.5 77 16-92 38-114 (115)
98 3pge_A SUMO-modified prolifera 98.7 6.3E-08 2.1E-12 96.2 9.9 81 14-95 25-105 (200)
99 3tix_A Ubiquitin-like protein 98.7 3.6E-08 1.2E-12 97.7 7.9 80 14-94 53-132 (207)
100 3v7o_A Minor nucleoprotein VP3 98.4 4.4E-08 1.5E-12 98.2 0.2 84 11-95 14-97 (227)
101 2pjh_A Protein NPL4, nuclear p 98.2 4.6E-07 1.6E-11 77.4 3.6 71 17-88 3-78 (80)
102 2jxx_A Nfatc2-interacting prot 98.2 6.4E-06 2.2E-10 73.3 9.6 76 13-88 20-96 (97)
103 3goe_A DNA repair protein RAD6 98.1 1.6E-05 5.3E-10 68.9 9.6 73 17-89 8-81 (82)
104 3uf8_A Ubiquitin-like protein 98.0 1.1E-05 3.8E-10 79.8 9.3 81 14-95 17-97 (209)
105 3ix6_A TS, tsase, thymidylate 97.9 1.5E-06 5E-11 93.1 0.0 82 12-94 15-96 (360)
106 4da1_A Protein phosphatase 1K, 97.8 3E-06 1E-10 90.1 0.0 79 15-94 27-105 (389)
107 2l76_A Nfatc2-interacting prot 97.8 0.00015 5E-09 64.7 10.1 77 14-91 17-93 (95)
108 4efo_A Serine/threonine-protei 97.7 0.00012 3.9E-09 65.2 8.5 70 20-89 14-87 (94)
109 2bps_A YUKD protein; ubiquitin 97.4 0.00037 1.3E-08 60.4 7.4 71 17-87 3-80 (81)
110 2kc2_A Talin-1, F1; FERM, adhe 97.4 0.00019 6.6E-09 66.9 5.6 69 20-88 13-120 (128)
111 2al3_A TUG long isoform; TUG U 97.1 0.00095 3.2E-08 59.0 7.0 76 18-93 9-84 (90)
112 3qx1_A FAS-associated factor 1 96.9 0.0046 1.6E-07 52.6 9.2 74 15-89 4-82 (84)
113 3plu_A Ubiquitin-like modifier 96.8 2.7E-05 9.2E-10 69.1 -5.9 42 101-142 23-67 (93)
114 2dzk_A UBX domain-containing p 96.7 0.012 4.2E-07 52.8 10.9 79 14-92 9-92 (109)
115 1wju_A NEDD8 ultimate buster-1 96.7 0.0002 6.9E-09 64.1 -1.0 36 107-142 29-65 (100)
116 2xzm_9 RPS31E; ribosome, trans 96.5 0.0004 1.4E-08 68.5 0.0 42 101-142 2-46 (189)
117 4eew_A Large proline-rich prot 96.5 5.1E-05 1.7E-09 64.1 -5.7 59 79-142 2-63 (88)
118 1uh6_A Ubiquitin-like 5; beta- 96.2 0.00014 4.7E-09 65.2 -4.7 38 105-142 36-74 (100)
119 1wj4_A KIAA0794 protein; UBX d 96.1 0.017 5.8E-07 53.2 8.5 75 15-90 40-119 (124)
120 3m63_B Ubiquitin domain-contai 96.0 0.00029 9.9E-09 62.1 -3.8 65 71-142 7-73 (101)
121 2lxa_A Ubiquitin-like protein 95.9 0.00033 1.1E-08 60.7 -3.7 38 105-142 9-50 (87)
122 2cr5_A Reproduction 8; UBX dom 95.8 0.072 2.4E-06 47.6 10.9 74 16-90 21-98 (109)
123 4ajy_B Transcription elongatio 95.4 0.00073 2.5E-08 62.3 -3.8 34 109-142 13-47 (118)
124 3b1l_X E3 ubiquitin-protein li 94.4 0.0027 9.3E-08 51.6 0.0 38 105-142 8-46 (76)
125 1s3s_G P47 protein; AAA ATPase 95.2 0.047 1.6E-06 50.3 7.8 72 15-86 49-124 (127)
126 3phx_B Ubiquitin-like protein 95.1 0.00049 1.7E-08 56.7 -5.2 38 105-142 12-50 (79)
127 2kjr_A CG11242; UBL, ubiquitin 95.0 0.0017 6E-08 56.9 -2.5 35 108-142 28-63 (95)
128 4b6w_A Tubulin-specific chaper 94.9 0.003 1E-07 54.4 -1.0 35 108-142 15-50 (86)
129 4dwf_A HLA-B-associated transc 94.9 0.00062 2.1E-08 57.6 -5.5 38 105-142 13-51 (90)
130 3u5e_m 60S ribosomal protein L 94.8 0.0049 1.7E-07 56.2 0.0 38 105-142 8-46 (128)
131 2kk8_A Uncharacterized protein 94.8 0.00064 2.2E-08 57.9 -5.5 38 105-142 18-56 (84)
132 2daj_A KIAA0977 protein, COBL- 94.8 0.079 2.7E-06 46.7 7.4 68 14-81 6-76 (91)
133 2fnj_B Transcription elongatio 94.7 0.0011 3.6E-08 61.1 -4.7 34 109-142 13-47 (118)
134 4e71_A Plexin-B2, MM1; transme 94.7 0.14 4.8E-06 46.8 9.3 74 17-90 10-110 (111)
135 2kj6_A Tubulin folding cofacto 94.7 0.0022 7.4E-08 56.7 -2.6 35 108-142 27-62 (97)
136 2dzm_A FAS-associated factor 1 94.6 0.0015 5.3E-08 58.1 -3.8 36 105-140 16-52 (100)
137 3dbh_I NEDD8; cell cycle, acti 94.5 0.0013 4.5E-08 54.8 -4.2 38 105-142 20-58 (88)
138 3u5c_f 40S ribosomal protein S 94.5 0.0063 2.2E-07 57.8 0.0 38 105-142 8-46 (152)
139 3ivf_A Talin-1; FERM domain, c 94.5 0.067 2.3E-06 56.2 7.8 108 18-132 3-121 (371)
140 1wyw_B Ubiquitin-like protein 94.4 0.0031 1.1E-07 54.8 -2.4 38 105-142 29-67 (97)
141 3v6c_B Ubiquitin; structural g 94.3 0.0014 4.9E-08 55.8 -4.5 43 100-142 18-63 (91)
142 3m62_B UV excision repair prot 94.3 0.0024 8.1E-08 56.5 -3.4 38 105-142 9-47 (106)
143 2r2o_A Plexin-B1; effector dom 94.3 0.14 4.9E-06 48.4 8.5 77 16-92 22-130 (138)
144 4fbj_B NEDD8; effector-HOST ta 94.2 0.0013 4.5E-08 56.0 -5.0 38 105-142 8-46 (88)
145 1v5t_A 8430435I17RIK protein; 93.9 0.0029 9.9E-08 54.2 -3.5 41 100-140 8-51 (90)
146 1wh3_A 59 kDa 2'-5'-oligoadeny 93.8 0.0021 7.1E-08 53.7 -4.4 38 105-142 15-53 (87)
147 1wgh_A Ubiquitin-like 3, HCG-1 93.7 0.0039 1.3E-07 57.0 -3.2 39 105-143 24-71 (116)
148 4a20_A Ubiquitin-like protein 93.5 0.0032 1.1E-07 55.7 -3.9 38 105-142 27-68 (98)
149 3jyu_A Ubiquitin carboxyl-term 93.5 0.35 1.2E-05 48.4 10.3 76 19-94 140-224 (231)
150 2l7r_A Ubiquitin-like protein 93.4 0.0019 6.5E-08 55.7 -5.4 43 100-142 20-63 (93)
151 2hj8_A Interferon-induced 17 k 93.3 0.0085 2.9E-07 50.8 -1.5 37 106-142 13-50 (88)
152 4a3p_A Ubiquitin carboxyl-term 93.3 0.36 1.2E-05 47.8 9.9 76 19-94 128-212 (217)
153 2uyz_B Small ubiquitin-related 93.2 0.0026 8.9E-08 52.3 -4.7 38 105-142 11-49 (79)
154 2faz_A Ubiquitin-like containi 93.0 0.0025 8.4E-08 52.3 -5.1 38 105-142 10-50 (78)
155 2gow_A HCG-1 protein, ubiquiti 93.0 0.013 4.3E-07 54.2 -1.0 38 105-142 25-71 (125)
156 4dbg_A Ranbp-type and C3HC4-ty 92.9 0.0035 1.2E-07 56.6 -4.7 35 108-142 37-72 (105)
157 1wgg_A Ubiquitin carboxyl-term 92.9 0.0031 1.1E-07 55.0 -5.0 35 107-141 16-52 (96)
158 1wgd_A Homocysteine-responsive 92.9 0.0057 2E-07 52.3 -3.2 34 109-142 21-57 (93)
159 1wy8_A NP95-like ring finger p 92.8 0.0043 1.5E-07 52.1 -4.0 38 105-142 15-55 (89)
160 4hcn_B Polyubiquitin, ubiquiti 92.7 0.0035 1.2E-07 54.3 -4.8 38 105-142 30-68 (98)
161 1sif_A Ubiquitin; hydrophobic 92.7 0.0033 1.1E-07 53.4 -4.9 43 100-142 10-55 (88)
162 3mtn_B UBA80, ubcep1, ubiquiti 92.7 0.0072 2.5E-07 49.8 -2.8 37 106-142 12-49 (85)
163 1se9_A Ubiquitin family; ubiqu 92.5 0.0097 3.3E-07 55.3 -2.4 38 105-142 24-70 (126)
164 2kdb_A Homocysteine-responsive 92.4 0.006 2.1E-07 54.0 -3.8 34 109-142 37-73 (99)
165 2kan_A Uncharacterized protein 92.4 0.0043 1.5E-07 53.8 -4.7 34 109-142 26-60 (94)
166 1ttn_A DC-UBP, dendritic cell- 92.3 0.0049 1.7E-07 54.3 -4.5 38 105-142 31-69 (106)
167 3n3k_B Ubiquitin; hydrolase, p 92.2 0.0062 2.1E-07 50.3 -3.8 37 106-142 12-49 (85)
168 2dzi_A Ubiquitin-like protein 92.1 0.0059 2E-07 50.0 -4.0 37 106-142 16-53 (81)
169 3k9o_B Ubiquitin, UBB+1; E2-25 92.1 0.0042 1.5E-07 52.9 -5.0 38 105-142 9-47 (96)
170 1uel_A HHR23B, UV excision rep 92.1 0.0054 1.9E-07 52.8 -4.4 38 105-142 8-49 (95)
171 1v86_A DNA segment, CHR 7, way 91.9 0.0057 1.9E-07 53.1 -4.6 36 106-141 25-61 (95)
172 1v5o_A 1700011N24RIK protein; 91.9 0.0096 3.3E-07 52.1 -3.1 36 107-142 21-57 (102)
173 2wyq_A HHR23A, UV excision rep 91.9 0.0055 1.9E-07 50.8 -4.5 38 105-142 13-54 (85)
174 1ndd_A NEDD8, protein (ubiquit 91.7 0.0046 1.6E-07 49.6 -5.0 38 105-142 8-46 (76)
175 3l0w_B Monoubiquitinated proli 91.5 0.0063 2.2E-07 58.3 -5.1 38 105-142 8-46 (169)
176 1oey_A P67-PHOX, neutrophil cy 91.3 0.76 2.6E-05 40.0 8.2 50 15-66 2-51 (83)
177 1v6e_A Cytoskeleton-associated 91.2 0.012 4.3E-07 50.7 -3.1 34 109-142 20-54 (95)
178 2ojr_A Ubiquitin; lanthide-bin 91.1 0.0029 1E-07 56.2 -7.4 37 106-142 44-81 (111)
179 3h6n_A Plexin-D1; structural g 91.1 0.85 2.9E-05 42.6 8.8 74 18-91 4-105 (127)
180 3q3f_A Ribonuclease/ubiquitin 90.7 0.0085 2.9E-07 58.9 -5.2 38 105-142 113-151 (189)
181 1we7_A SF3A1 protein; structur 90.2 0.014 4.7E-07 52.1 -3.8 57 83-142 24-81 (115)
182 1yx5_B Ubiquitin; proteasome, 90.2 0.011 3.8E-07 50.9 -4.3 37 106-142 9-46 (98)
183 1vjk_A Molybdopterin convertin 90.2 1.8 6.2E-05 37.4 9.7 68 17-89 8-93 (98)
184 2klc_A Ubiquilin-1; ubiquitin- 89.9 0.02 6.9E-07 50.1 -3.0 36 107-142 34-70 (101)
185 1ryj_A Unknown; beta/alpha pro 89.8 2.5 8.6E-05 34.6 9.8 64 18-91 4-67 (70)
186 3vdz_A Ubiquitin-40S ribosomal 89.8 0.0089 3E-07 53.2 -5.4 38 105-142 43-81 (111)
187 4e74_A Plexin-A4; RBD, structu 89.8 0.68 2.3E-05 42.7 6.9 75 17-91 12-115 (117)
188 1wx8_A Riken cDNA 4931431F19; 89.7 0.017 5.8E-07 49.4 -3.6 36 107-142 26-62 (96)
189 1we6_A Splicing factor, putati 89.4 0.026 8.8E-07 50.0 -2.7 53 80-142 23-77 (111)
190 2dzj_A Synaptic glycoprotein S 89.2 0.03 1E-06 48.2 -2.4 32 111-142 26-60 (88)
191 2l32_A Small archaeal modifier 89.2 0.74 2.5E-05 38.7 6.2 63 19-91 1-63 (74)
192 2kd0_A LRR repeats and ubiquit 89.1 0.014 4.7E-07 49.6 -4.6 37 106-142 20-57 (85)
193 3a9j_A Ubiquitin; protein comp 89.0 0.012 4E-07 47.3 -4.9 37 106-142 9-46 (76)
194 1wxv_A BAG-family molecular ch 88.7 0.021 7.2E-07 48.6 -3.7 36 107-142 16-57 (92)
195 1j8c_A Ubiquitin-like protein 88.6 0.03 1E-06 51.2 -3.0 36 107-142 41-77 (125)
196 2kdi_A Ubiquitin, vacuolar pro 88.4 0.022 7.5E-07 51.1 -3.9 38 105-142 17-55 (114)
197 1t0y_A Tubulin folding cofacto 88.4 0.04 1.4E-06 49.9 -2.2 34 109-142 19-53 (122)
198 2bwf_A Ubiquitin-like protein 88.4 0.015 5.2E-07 47.0 -4.6 36 107-142 13-49 (77)
199 1v2y_A 3300001G02RIK protein; 88.3 0.0075 2.6E-07 54.2 -7.1 33 105-137 15-48 (105)
200 1vd2_A Protein kinase C, IOTA 87.5 2.5 8.5E-05 37.1 8.6 52 14-66 2-54 (89)
201 1wx7_A Ubiquilin 3; ubiquitin- 87.3 0.044 1.5E-06 48.0 -2.6 33 110-142 29-62 (106)
202 1yqb_A Ubiquilin 3; structural 87.2 0.047 1.6E-06 47.8 -2.5 33 110-142 34-67 (100)
203 3kuz_A Plexin-C1; structural g 87.1 2.7 9.3E-05 39.2 9.1 74 16-89 17-125 (126)
204 1wf9_A NPL4 family protein; be 86.9 0.034 1.2E-06 49.2 -3.6 36 106-142 16-53 (107)
205 4efo_A Serine/threonine-protei 86.1 0.028 9.5E-07 50.0 -4.6 39 105-143 21-60 (94)
206 1tyg_B YJBS; alpha beta barrel 85.5 1.8 6E-05 37.7 6.6 70 12-91 14-84 (87)
207 1wgk_A Riken cDNA 2900073H19 p 84.8 1.8 6.1E-05 39.2 6.5 76 17-94 10-108 (114)
208 3rpf_C Molybdopterin convertin 84.5 2.6 9E-05 34.6 6.9 68 19-91 1-71 (74)
209 3po0_A Small archaeal modifier 84.0 6.9 0.00024 32.8 9.5 58 29-91 18-86 (89)
210 1wia_A Hypothetical ubiquitin- 83.4 0.059 2E-06 46.0 -3.6 36 105-142 15-50 (95)
211 3ai5_A Yeast enhanced green fl 83.3 0.066 2.3E-06 56.3 -4.1 44 99-142 233-279 (307)
212 1x1m_A Ubiquitin-like protein 82.6 0.079 2.7E-06 46.7 -3.2 29 114-142 40-73 (107)
213 3hm6_X Plexin-B1; structural g 82.4 3.2 0.00011 47.5 8.7 78 16-93 255-364 (644)
214 1wgr_A Growth factor receptor- 82.2 5.4 0.00019 35.7 8.4 80 13-92 4-94 (100)
215 1ef1_A Moesin; membrane, FERM 81.0 5.7 0.00019 39.9 9.2 73 18-91 1-79 (294)
216 1h4r_A Merlin; FERM, neurofibr 80.9 5.7 0.0002 40.4 9.3 75 16-91 20-99 (314)
217 1oqy_A HHR23A, UV excision rep 80.2 0.11 3.7E-06 55.8 -3.9 38 105-142 15-56 (368)
218 2kmc_A Fermitin family homolog 77.8 10 0.00035 34.2 8.6 72 19-90 20-99 (102)
219 3ivf_A Talin-1; FERM domain, c 77.7 8.1 0.00028 40.4 9.5 74 17-90 84-167 (371)
220 3qij_A Protein 4.1; cytoskelet 77.5 4.7 0.00016 41.2 7.5 79 12-90 11-95 (296)
221 2kzr_A Ubiquitin thioesterase 77.5 0.1 3.4E-06 44.1 -4.1 36 105-141 8-45 (86)
222 1ip9_A BEM1 protein; ubiquitin 76.7 5.9 0.0002 34.7 6.7 46 17-65 11-57 (85)
223 2juo_A GA-binding protein alph 76.5 5.3 0.00018 35.1 6.3 62 31-92 5-66 (89)
224 3shq_A UBLCP1; phosphatase, hy 75.7 0.2 7E-06 52.6 -3.3 36 106-141 13-49 (320)
225 3dwg_C 9.5 kDa culture filtrat 75.2 9.3 0.00032 32.3 7.6 72 19-92 1-91 (93)
226 2qjl_A URM1, ubiquitin-related 74.3 19 0.00065 31.0 9.4 70 19-90 2-95 (99)
227 3ig3_A Plxna3 protein; plexin 73.9 9.1 0.00031 43.8 9.1 77 16-92 231-336 (627)
228 2i1j_A Moesin; FERM, coiled-co 73.5 8.4 0.00029 43.4 8.8 74 17-91 3-82 (575)
229 1fm0_D Molybdopterin convertin 72.9 9.6 0.00033 31.1 6.8 56 29-90 17-77 (81)
230 1f0z_A THis protein; ubiquitin 72.8 7.5 0.00026 31.2 6.0 58 27-91 6-63 (66)
231 2kvr_A Ubiquitin carboxyl-term 72.6 2.9 0.0001 38.7 4.0 33 31-63 58-90 (130)
232 2l52_A Methanosarcina acetivor 71.3 15 0.0005 31.9 8.0 69 18-90 3-95 (99)
233 2kl0_A Putative thiamin biosyn 71.3 7.8 0.00027 32.3 5.9 60 27-94 6-65 (73)
234 1wgy_A RAP guanine nucleotide 70.8 15 0.00052 33.2 8.1 77 15-91 6-87 (104)
235 2k9x_A Tburm1, uncharacterized 70.5 1.5 5E-05 39.6 1.4 75 17-93 3-101 (110)
236 2q5w_D Molybdopterin convertin 66.1 9.7 0.00033 30.9 5.4 56 29-90 16-73 (77)
237 4eut_A Serine/threonine-protei 64.3 22 0.00075 36.6 9.0 53 27-79 320-374 (396)
238 2k5p_A THis protein, thiamine- 61.3 13 0.00044 31.4 5.4 63 27-94 6-69 (78)
239 2cu3_A Unknown function protei 59.8 17 0.00059 28.9 5.7 58 26-91 4-61 (64)
240 2io1_B Small ubiquitin-related 59.5 0.54 1.8E-05 41.0 -3.5 40 105-144 15-55 (94)
241 3qa8_A MGC80376 protein; kinas 55.3 11 0.00037 43.4 5.2 51 27-77 320-371 (676)
242 2daf_A FLJ35834 protein; hypot 55.1 0.58 2E-05 43.2 -4.2 36 107-142 26-62 (118)
243 2kmm_A Guanosine-3',5'-BIS(dip 54.3 17 0.00058 29.0 4.8 63 19-90 1-63 (73)
244 1q1o_A Cell division control p 51.9 20 0.00068 32.1 5.2 47 19-65 6-64 (98)
245 2ylm_A Ubiquitin carboxyl-term 47.2 24 0.00082 39.3 6.2 78 14-91 126-218 (530)
246 1y8x_B Ubiquitin-activating en 46.6 15 0.00053 32.6 3.7 59 30-88 6-82 (98)
247 2g1e_A Hypothetical protein TA 45.7 65 0.0022 26.5 7.3 57 33-90 19-86 (90)
248 2dhz_A RAP guanine nucleotide 45.1 51 0.0017 30.5 7.0 74 17-90 8-92 (120)
249 1wjn_A Tubulin-folding protein 44.2 7.1 0.00024 33.4 1.1 36 107-142 22-58 (97)
250 2lgx_A Fermitin family homolog 43.5 7.9 0.00027 35.4 1.3 70 19-89 27-101 (112)
251 2ylm_A Ubiquitin carboxyl-term 43.4 17 0.00057 40.6 4.2 32 31-62 38-69 (530)
252 1wm3_A Ubiquitin-like protein 42.0 1.2 4E-05 36.6 -4.0 38 105-142 9-47 (72)
253 3au4_A Myosin-X; protein-prote 41.9 46 0.0016 36.7 7.4 47 17-63 215-263 (555)
254 2io0_B Small ubiquitin-related 41.1 2.9 9.8E-05 36.3 -1.9 40 105-144 13-53 (91)
255 3onh_A Ubiquitin-activating en 41.0 42 0.0014 31.4 5.8 56 33-89 10-78 (127)
256 1f2r_I Inhibitor of caspase-ac 40.7 1.5E+02 0.0051 26.6 9.1 68 19-91 19-90 (100)
257 2hj1_A Hypothetical protein; s 40.0 61 0.0021 28.6 6.5 71 16-91 10-86 (97)
258 2c7h_A RBBP6, retinoblastoma-b 39.4 66 0.0023 28.2 6.4 45 17-61 5-51 (86)
259 3a4r_A Nfatc2-interacting prot 38.4 1.1 3.8E-05 37.6 -4.8 38 105-142 15-54 (79)
260 2k8h_A Small ubiquitin protein 35.6 3.7 0.00013 37.0 -2.1 38 105-142 34-72 (110)
261 2eel_A Cell death activator CI 35.6 72 0.0025 28.2 6.1 67 19-91 10-79 (91)
262 1rws_A Hypothetical protein PF 33.2 13 0.00046 30.7 1.1 48 33-89 25-72 (77)
263 1wz0_A Ubiquitin-like protein 31.9 4.6 0.00016 35.9 -2.1 39 105-143 32-71 (104)
264 2d07_B Ubiquitin-like protein 30.7 4.4 0.00015 35.0 -2.4 40 106-145 26-66 (93)
265 1wmh_B Partitioning defective- 29.2 2.1E+02 0.0071 25.0 7.9 49 16-65 4-54 (86)
266 3w1s_C Ubiquitin-like protein 27.8 2.4E+02 0.0081 24.6 8.1 72 15-90 5-85 (91)
267 2eke_C Ubiquitin-like protein 27.5 5.9 0.0002 35.5 -2.2 39 106-144 39-78 (106)
268 2inc_C TOUB protein; DIIRON, 4 26.7 2.1E+02 0.0074 24.9 7.4 60 31-90 15-82 (83)
269 3r8s_T 50S ribosomal protein L 26.5 1.1E+02 0.0036 27.0 5.6 39 29-67 28-67 (93)
270 3pvl_A Myosin VIIA isoform 1; 25.8 84 0.0029 36.0 6.2 40 17-56 262-301 (655)
271 4gmv_A RAS-associated and plec 25.5 1.1E+02 0.0037 31.7 6.5 72 17-88 30-112 (281)
272 3ge3_C Toluene-4-monooxygenase 24.3 3.6E+02 0.012 23.6 8.9 71 19-89 4-82 (84)
273 1pqs_A Cell division control p 22.2 59 0.002 27.7 3.1 36 30-65 3-43 (77)
274 3tca_A Amyloid beta A4 precurs 21.3 1.7E+02 0.0057 28.7 6.7 42 17-58 33-74 (291)
275 2v1y_A Phosphatidylinositol-4, 20.9 1.5E+02 0.0051 26.8 5.6 75 15-90 16-104 (108)
276 1j0g_A Hypothetical protein 18 20.4 2.8E+02 0.0097 24.3 6.9 63 31-93 26-89 (92)
277 3tve_T 50S ribosomal protein L 20.1 1.3E+02 0.0044 26.4 4.9 40 28-67 21-61 (92)
No 1
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.87 E-value=5.4e-23 Score=195.26 Aligned_cols=126 Identities=30% Similarity=0.448 Sum_probs=113.7
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 12 se~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
.......|+|+||+++|+++.|+|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|+++++|||+++.
T Consensus 14 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 93 (172)
T 3u30_A 14 LVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 93 (172)
T ss_dssp -----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECC
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecc
Confidence 34466779999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCC--CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 92 PVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 92 pggpass~~qI~v--~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+ ++.+++ .+|+.+.+.|.+++||..||.+|+ ++|||+++|||+|.
T Consensus 94 ~g-----g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~ 142 (172)
T 3u30_A 94 RG-----GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 142 (172)
T ss_dssp CC-----CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred cc-----cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC
Confidence 76 455554 678899999999999999999999 89999999999974
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.86 E-value=9.3e-23 Score=190.52 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=111.2
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-e-CCeecCCccccccccccCCCEEEEeeec-CCC
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-C-RGKVLKDDQLLSAYHVEDGHTLHMVVRQ-PVP 94 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI-f-kGKvLkDdkTLSdYGIqdGSTLhLVlRl-pgg 94 (699)
.|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+ | +|+.|+|+++|++|+|++|++|||+++. ++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~- 80 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDE- 80 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCC-
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCC-
Confidence 489999999999999999999999999999999999999999999 9 7999999999999999999999999984 43
Q ss_pred CCCCCCCCCC--CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 95 SSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 95 pass~~qI~v--~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.|++++ .+|+.+.+.|++++||+.||.+|+ ++|+|+++|||+|+
T Consensus 81 ----~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 127 (159)
T 3rt3_B 81 ----PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 127 (159)
T ss_dssp ----CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred ----cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 566665 568999999999999999999999 89999999999874
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.81 E-value=4.7e-21 Score=175.48 Aligned_cols=119 Identities=32% Similarity=0.482 Sum_probs=110.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCCCCCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSSSD 98 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpggpass 98 (699)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|++|++|||+.+.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~----- 75 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG----- 75 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTT-----
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccc-----
Confidence 799999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCC--CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 99 ~~qI~v--~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
++.+++ ..|+.+.+.|.+++||..||.+|+ +.|+|++.|||+|.
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~ 122 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC
Confidence 355555 568888999999999999999999 89999999999874
No 4
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=143.56 Aligned_cols=77 Identities=25% Similarity=0.316 Sum_probs=74.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
..|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|+.+
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999764
No 5
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.75 E-value=3.6e-18 Score=145.75 Aligned_cols=80 Identities=44% Similarity=0.666 Sum_probs=74.5
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCCC
Q 005384 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpggp 95 (699)
+.+|+|+||+++|+++.|+|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+| +|++|||+++.+..+
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999 899999999987754
Q ss_pred C
Q 005384 96 S 96 (699)
Q Consensus 96 a 96 (699)
.
T Consensus 82 ~ 82 (90)
T 4dwf_A 82 H 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 6
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.75 E-value=4.1e-18 Score=143.81 Aligned_cols=83 Identities=29% Similarity=0.474 Sum_probs=78.2
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 12 se~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
+..++..|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++
T Consensus 6 ~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl 85 (88)
T 3dbh_I 6 SVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRL 85 (88)
T ss_dssp CSSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCC
T ss_pred CCCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 005384 92 PVP 94 (699)
Q Consensus 92 pgg 94 (699)
.++
T Consensus 86 ~GG 88 (88)
T 3dbh_I 86 RGG 88 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 7
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.6e-18 Score=150.21 Aligned_cols=82 Identities=34% Similarity=0.487 Sum_probs=74.9
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 13 e~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
...+..|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|+.
T Consensus 17 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~ 96 (98)
T 4hcn_B 17 YFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 96 (98)
T ss_dssp -----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCS
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 005384 93 VP 94 (699)
Q Consensus 93 gg 94 (699)
++
T Consensus 97 GG 98 (98)
T 4hcn_B 97 GG 98 (98)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 8
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.73 E-value=1.1e-17 Score=143.88 Aligned_cols=81 Identities=32% Similarity=0.500 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 12 se~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
.......|+|+||+++|+++.++|++++||.+||++|++++|+++++|||+|+||.|+|+++|++|+|++|++|||++|+
T Consensus 11 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 11 GLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 005384 92 P 92 (699)
Q Consensus 92 p 92 (699)
+
T Consensus 91 r 91 (91)
T 3v6c_B 91 R 91 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.73 E-value=8.7e-18 Score=148.75 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=71.5
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEee
Q 005384 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
....+|+|+||++.|+++.++|++++||.+||++|+++.|+|+++|||+|.||+|+|+.+|++|+|++|++|||..
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999975
No 10
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.6e-17 Score=139.91 Aligned_cols=82 Identities=28% Similarity=0.441 Sum_probs=76.8
Q ss_pred CCCcEEEEEEeCCC-cEEEE-EecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 15 SETTIEIKIKTLDS-QTYTL-RVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 15 s~~tMqItVKtl~G-Kt~tL-eVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
+..+|+|+||+++| +++.+ +|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||+++..
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence 44679999999999 79999 59999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 005384 93 VPSS 96 (699)
Q Consensus 93 ggpa 96 (699)
++++
T Consensus 84 gG~~ 87 (89)
T 1wy8_A 84 SGPS 87 (89)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7643
No 11
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.72 E-value=9.8e-18 Score=143.91 Aligned_cols=77 Identities=29% Similarity=0.483 Sum_probs=72.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpggp 95 (699)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++++++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998753
No 12
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.5e-17 Score=139.20 Aligned_cols=80 Identities=26% Similarity=0.386 Sum_probs=76.8
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
++.+|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999875
No 13
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=1.6e-17 Score=147.48 Aligned_cols=86 Identities=19% Similarity=0.286 Sum_probs=76.1
Q ss_pred CCCCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEe
Q 005384 9 IPGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 9 ~~~se~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLV 88 (699)
..........|+|+||+++|+++.++|++++||.+||++|++++|+++++|||+|+||.|+|+++|++|+|++|++|||+
T Consensus 14 ~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv 93 (106)
T 1ttn_A 14 PEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVI 93 (106)
T ss_dssp -------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEE
T ss_pred CCCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 33344566779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 005384 89 VRQPVP 94 (699)
Q Consensus 89 lRlpgg 94 (699)
++.+..
T Consensus 94 ~~~~~~ 99 (106)
T 1ttn_A 94 VSQPVQ 99 (106)
T ss_dssp CCCSSC
T ss_pred EeCCCC
Confidence 998765
No 14
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.71 E-value=2.2e-17 Score=134.64 Aligned_cols=76 Identities=29% Similarity=0.488 Sum_probs=72.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999998763
No 15
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=2.1e-17 Score=143.01 Aligned_cols=84 Identities=30% Similarity=0.404 Sum_probs=78.1
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 12 se~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
...+..+|+|+||+. |+++.++|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+|++|++|||+++.
T Consensus 11 ~~~~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 89 (96)
T 1wx8_A 11 REPSSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS 89 (96)
T ss_dssp SCCCSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred CCCCCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 334567899999998 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 005384 92 PVPSS 96 (699)
Q Consensus 92 pggpa 96 (699)
.+++.
T Consensus 90 ~~g~~ 94 (96)
T 1wx8_A 90 HSGPS 94 (96)
T ss_dssp SSCSS
T ss_pred CCCCC
Confidence 87543
No 16
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.7e-17 Score=137.42 Aligned_cols=78 Identities=33% Similarity=0.494 Sum_probs=75.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
.+|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999875
No 17
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=140.15 Aligned_cols=76 Identities=45% Similarity=0.673 Sum_probs=71.7
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeee
Q 005384 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
.....|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+| +|++|||++|
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp --CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred cCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 345679999999999999999999999999999999999999999999999999999999999999 8999999986
No 18
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=1.6e-17 Score=138.99 Aligned_cols=79 Identities=29% Similarity=0.453 Sum_probs=73.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCCC
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpggp 95 (699)
.+|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999998753
No 19
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=135.83 Aligned_cols=79 Identities=29% Similarity=0.473 Sum_probs=74.8
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
.+...|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+++++
T Consensus 3 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 3 SGSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp CSSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 3556799999999999999999999999999999999999999999999999999999999999999999999999863
No 20
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=1.8e-17 Score=148.30 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=75.7
Q ss_pred CCCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEee
Q 005384 10 PGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 10 ~~se~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
-.++....+|+|+||++.|+++.|+|++++||.+||++|+++.|+|+++|||+|.||+|+|+.+|++|+|+++++|||++
T Consensus 20 ~~~~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 20 RGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CCCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred ccCCCCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 44666777899999999999999999999999999999999999999999999999999999999999999999999985
No 21
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.70 E-value=2.3e-17 Score=137.40 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=74.7
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
+.|+|+||+++|+++.++|++++||.+||++|+++.++|+++|||+|+|+.|+|+++|++|+|++|++|||++++.++
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999998763
No 22
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.70 E-value=4.6e-17 Score=136.79 Aligned_cols=78 Identities=28% Similarity=0.487 Sum_probs=71.9
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASV---TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeek---tGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
...|+|+||+++|+++.++|++++||.+||++|+++ +++++++|||+|+||.|+|+++|++|+|++|++|||+++.+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 467999999999999999999999999999999998 88999999999999999999999999999999999999876
Q ss_pred C
Q 005384 93 V 93 (699)
Q Consensus 93 g 93 (699)
.
T Consensus 83 ~ 83 (85)
T 2wyq_A 83 K 83 (85)
T ss_dssp -
T ss_pred C
Confidence 4
No 23
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.70 E-value=4.8e-17 Score=132.66 Aligned_cols=76 Identities=37% Similarity=0.546 Sum_probs=73.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999998763
No 24
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=140.48 Aligned_cols=79 Identities=24% Similarity=0.293 Sum_probs=72.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCCC
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpggp 95 (699)
..|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++..++.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999987753
No 25
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.70 E-value=3.3e-17 Score=143.34 Aligned_cols=83 Identities=18% Similarity=0.260 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 12 se~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
.......|+|+||+++|+++.|+|++++||.+||++|+++.|+|+++|||+|+|+.|+|+++|++|+|+++++|||++++
T Consensus 15 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~ 94 (97)
T 1wyw_B 15 DKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 94 (97)
T ss_dssp ----CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESS
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEec
Confidence 33455679999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 005384 92 PVP 94 (699)
Q Consensus 92 pgg 94 (699)
.++
T Consensus 95 ~GG 97 (97)
T 1wyw_B 95 TGG 97 (97)
T ss_dssp SCC
T ss_pred CCC
Confidence 763
No 26
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=4.8e-17 Score=134.88 Aligned_cols=75 Identities=29% Similarity=0.471 Sum_probs=71.9
Q ss_pred cEEEEEEeCCCcEE-EEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 18 TIEIKIKTLDSQTY-TLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 18 tMqItVKtl~GKt~-tLe-VdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
.|+|+||+++|+++ .++ |++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 59999999999985 899 9999999999999999999999999999999999999999999999999999999864
No 27
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.69 E-value=4.9e-17 Score=140.05 Aligned_cols=77 Identities=36% Similarity=0.541 Sum_probs=73.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpggp 95 (699)
|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|++|++|||++++.++.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998764
No 28
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=4.8e-17 Score=140.50 Aligned_cols=81 Identities=30% Similarity=0.386 Sum_probs=74.8
Q ss_pred CCcEEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHh--CCCCCCeEEEeCCeecCCccccccc--cccCCCEEEEee
Q 005384 16 ETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVT--GVLSEQQRLICRGKVLKDDQLLSAY--HVEDGHTLHMVV 89 (699)
Q Consensus 16 ~~tMqItVKtl~GK--t~tLeVdpsdTV~dLKekIeekt--GIPpeqQRLIfkGKvLkDdkTLSdY--GIqdGSTLhLVl 89 (699)
...|+|+||+.+++ ++.|+|++++||.+||++|++++ ++++++|||+|+||.|+|+++|++| +|+++++|||++
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 45699999999988 67777889999999999999999 9999999999999999999999999 999999999999
Q ss_pred ecCCCCC
Q 005384 90 RQPVPSS 96 (699)
Q Consensus 90 Rlpggpa 96 (699)
++.+++.
T Consensus 85 ~~~gg~~ 91 (93)
T 1wgd_A 85 NVKSGPS 91 (93)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9887643
No 29
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.6e-16 Score=140.72 Aligned_cols=84 Identities=27% Similarity=0.411 Sum_probs=77.6
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
..+.+|+|+||+.+++ +.|+|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+|++|++|||++++.+
T Consensus 13 ~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 13 QDPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp CCSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred CCCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 3467799999999886 799999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCC
Q 005384 94 PSSSD 98 (699)
Q Consensus 94 gpass 98 (699)
++..+
T Consensus 92 ~~~~~ 96 (106)
T 1wx7_A 92 RAMGN 96 (106)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 76543
No 30
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.3e-17 Score=146.85 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=71.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCCC
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpggp 95 (699)
+|+|+||+++|+++.|+|++++||.+||++|++++|+++++|||+|+||.|+|+++|++|+|++|++|+|+++.+...
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999976543
No 31
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=6.1e-17 Score=138.82 Aligned_cols=75 Identities=19% Similarity=0.362 Sum_probs=72.4
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCee-cCCccccccccccCCCEEEEeee
Q 005384 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKV-LKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKv-LkDdkTLSdYGIqdGSTLhLVlR 90 (699)
...|+|+||++.|+++.++|++++||.+||++|++++|+|+++|||+|+||. |+|+++|++|+|++|++|+|+++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 3569999999999999999999999999999999999999999999999999 99999999999999999999986
No 32
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=1.1e-16 Score=139.84 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=76.2
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc-cccccccccCCCEEEEeeecC
Q 005384 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDd-kTLSdYGIqdGSTLhLVlRlp 92 (699)
.....|+|+||++++ ++.++|++++||.+||++|++++++|+++|||+|+||.|+|+ ++|++|+|++|++|+|+++++
T Consensus 11 ~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~ 89 (94)
T 2kan_A 11 AAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI 89 (94)
T ss_dssp SSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred cCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence 456679999999977 899999999999999999999999999999999999999999 999999999999999999998
Q ss_pred CCC
Q 005384 93 VPS 95 (699)
Q Consensus 93 ggp 95 (699)
++.
T Consensus 90 gg~ 92 (94)
T 2kan_A 90 NRA 92 (94)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 33
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=2e-16 Score=137.58 Aligned_cols=76 Identities=33% Similarity=0.571 Sum_probs=72.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASV---TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeek---tGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
|+|+||+++|+++.++|++++||.+||++|+++ +|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~ 79 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKA 79 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCC
Confidence 899999999999999999999999999999999 7899999999999999999999999999999999999987654
No 34
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=4.8e-17 Score=146.89 Aligned_cols=101 Identities=30% Similarity=0.345 Sum_probs=91.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCCCC
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpggpa 96 (699)
..++|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++++++.
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~- 86 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS- 86 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC-
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc-
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCCCCC-----CCCCccccccccCCchhh
Q 005384 97 SDGTHNLP-----GTSRSHGSHVAPSVVIET 122 (699)
Q Consensus 97 ss~~qI~v-----~tg~titl~V~psdTVe~ 122 (699)
.+++ .+|++++++|+++++|..
T Consensus 87 ----~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 ----MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp ----CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ----eeeccccccccCceEEEEeccccccCC
Confidence 3444 247888899999888764
No 35
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.67 E-value=7.7e-17 Score=140.04 Aligned_cols=79 Identities=24% Similarity=0.318 Sum_probs=71.7
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
.....|+|+||+ |+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|++|+.+
T Consensus 15 ~~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 15 VPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp -----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred CCCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 455679999999 799999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 005384 94 P 94 (699)
Q Consensus 94 g 94 (699)
+
T Consensus 93 G 93 (93)
T 2l7r_A 93 G 93 (93)
T ss_dssp C
T ss_pred C
Confidence 3
No 36
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.2e-16 Score=137.16 Aligned_cols=77 Identities=35% Similarity=0.555 Sum_probs=70.4
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
-|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++++++
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999998874
No 37
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.67 E-value=2.2e-16 Score=141.60 Aligned_cols=79 Identities=35% Similarity=0.514 Sum_probs=75.3
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
...|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|+.++
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999998763
No 38
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=2.8e-16 Score=136.00 Aligned_cols=81 Identities=21% Similarity=0.316 Sum_probs=74.7
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc-cccccccccCCCEEEEeeec
Q 005384 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 13 e~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDd-kTLSdYGIqdGSTLhLVlRl 91 (699)
+++...|+|+||+++|+.+.++|++++||.+||++|++++ +++|||+|+||.|+|+ ++|++|+|++|++|||+++.
T Consensus 2 ~~~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 2 SSGSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp CCCCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence 3556789999999999999999999999999999999987 8999999999999999 99999999999999999998
Q ss_pred CCCCC
Q 005384 92 PVPSS 96 (699)
Q Consensus 92 pggpa 96 (699)
+...+
T Consensus 79 ~~~~~ 83 (95)
T 1wia_A 79 PGAAV 83 (95)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 39
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.66 E-value=1.1e-16 Score=141.98 Aligned_cols=78 Identities=15% Similarity=0.394 Sum_probs=71.4
Q ss_pred CCCcEEEEEEeCCCcEEEE--EecCCCCHHHHHHHH-HHHhCCCCCCeEEEeCCeecCCccccccccc-cCCCEEEEeee
Q 005384 15 SETTIEIKIKTLDSQTYTL--RVDKQVPVPALKEQI-ASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVR 90 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~tL--eVdpsdTV~dLKekI-eektGIPpeqQRLIfkGKvLkDdkTLSdYGI-qdGSTLhLVlR 90 (699)
....|+|+||+++|++|.+ +|++++||.+||++| +++.|+|+++|||+|+||+|+|+++|++|+| ++|++|+|+++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 5567999999999998777 566999999999999 8889999999999999999999999999999 99999999998
Q ss_pred cC
Q 005384 91 QP 92 (699)
Q Consensus 91 lp 92 (699)
++
T Consensus 96 kp 97 (98)
T 4a20_A 96 PN 97 (98)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 40
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.5e-16 Score=139.05 Aligned_cols=81 Identities=30% Similarity=0.429 Sum_probs=75.9
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
..+.+|+|+||+.+|+ +.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|++++++
T Consensus 18 ~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 18 GSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp CCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred CCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 4557799999999886 799999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 005384 94 PS 95 (699)
Q Consensus 94 gp 95 (699)
++
T Consensus 97 ~p 98 (100)
T 1yqb_A 97 RA 98 (100)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 41
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.66 E-value=2.7e-16 Score=129.36 Aligned_cols=74 Identities=38% Similarity=0.678 Sum_probs=70.6
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
+.|+|+||+ +|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+.+.
T Consensus 3 M~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 3 MSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred eEEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 459999999 89999999999999999999999999999999999999999999999999999999999998754
No 42
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=7.3e-17 Score=140.30 Aligned_cols=74 Identities=18% Similarity=0.417 Sum_probs=70.1
Q ss_pred cEEEEEEeCCCcEEEEEec--CCCCHHHHHHHH-HHHhCCCCCCeEEEeCCeecCCccccccccc-cCCCEEEEeeec
Q 005384 18 TIEIKIKTLDSQTYTLRVD--KQVPVPALKEQI-ASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVRQ 91 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVd--psdTV~dLKekI-eektGIPpeqQRLIfkGKvLkDdkTLSdYGI-qdGSTLhLVlRl 91 (699)
+|+|+||+++|+++.|+|+ +++||.+||++| +++.|+|+++|||+|+||+|+|+.+|++|+| ++|++|+|+++.
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 4999999999999998766 999999999999 9999999999999999999999999999999 799999999875
No 43
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=3e-16 Score=138.39 Aligned_cols=83 Identities=18% Similarity=0.350 Sum_probs=75.5
Q ss_pred CCcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc-cccccccccCCCEEEEeee
Q 005384 16 ETTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 16 ~~tMqItVKtl~G----Kt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDd-kTLSdYGIqdGSTLhLVlR 90 (699)
...|+|+||+..+ +++.++|++++||.+||++|++++++++++|||+|+||.|+|+ ++|++|+|++|++|||+.+
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 3569999999754 7999999999999999999999999999999999999999988 7999999999999999999
Q ss_pred cCCCCCCC
Q 005384 91 QPVPSSSD 98 (699)
Q Consensus 91 lpggpass 98 (699)
..+++.++
T Consensus 85 ~~gg~~~~ 92 (102)
T 1v5o_A 85 DNVGLRTP 92 (102)
T ss_dssp CCCCCSSC
T ss_pred CCCCCCCC
Confidence 88765543
No 44
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.65 E-value=5.1e-16 Score=137.09 Aligned_cols=80 Identities=28% Similarity=0.406 Sum_probs=74.3
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
.....|+|+||+. |+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++++.
T Consensus 21 ~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 21 GHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp --CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 3456799999998 899999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 005384 94 P 94 (699)
Q Consensus 94 g 94 (699)
.
T Consensus 100 ~ 100 (101)
T 2klc_A 100 R 100 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 45
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.64 E-value=4.8e-16 Score=135.19 Aligned_cols=76 Identities=37% Similarity=0.550 Sum_probs=73.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++..++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998874
No 46
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=2.5e-16 Score=141.76 Aligned_cols=80 Identities=15% Similarity=0.274 Sum_probs=73.5
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---------------CCeEEEeCCeecC-Ccccccccc
Q 005384 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---------------EQQRLICRGKVLK-DDQLLSAYH 78 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPp---------------eqQRLIfkGKvLk-DdkTLSdYG 78 (699)
....|+|+||+++|+++.|+|++++||.+||++|++++++++ ++|||+|+||.|+ |+++|++|+
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 345599999999999999999999999999999999999887 4679999999996 669999999
Q ss_pred ccCCCEEEEeeecCCC
Q 005384 79 VEDGHTLHMVVRQPVP 94 (699)
Q Consensus 79 IqdGSTLhLVlRlpgg 94 (699)
|++|++|||++++.+.
T Consensus 84 I~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 84 IRNRDEVSFIKKLGQK 99 (105)
T ss_dssp CCSSEEEEEEECSCSC
T ss_pred CCCCCEEEEEehhccC
Confidence 9999999999999774
No 47
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.45 E-value=1.5e-17 Score=137.10 Aligned_cols=75 Identities=25% Similarity=0.373 Sum_probs=72.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999765
No 48
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=6.5e-16 Score=141.97 Aligned_cols=81 Identities=31% Similarity=0.416 Sum_probs=71.9
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCCC
Q 005384 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpggp 95 (699)
..+|+|+||+. |+++.|+|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+|++|++|+|++++.++.
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 46799999999 99999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CC
Q 005384 96 SS 97 (699)
Q Consensus 96 as 97 (699)
..
T Consensus 109 ~~ 110 (125)
T 1j8c_A 109 SS 110 (125)
T ss_dssp --
T ss_pred CC
Confidence 43
No 49
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=1.2e-15 Score=139.56 Aligned_cols=84 Identities=17% Similarity=0.317 Sum_probs=74.8
Q ss_pred CCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH------HhCC--CCCCeEEEeCCeecCCccccccccccCC
Q 005384 11 GAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS------VTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDG 82 (699)
Q Consensus 11 ~se~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIee------ktGI--PpeqQRLIfkGKvLkDdkTLSdYGIqdG 82 (699)
....+.+.|+|+||++.|+++.|+|++++||.+||++|++ +.++ ++++|||||.||+|+|+++|++|+|+.+
T Consensus 9 ~~~~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~ 88 (116)
T 1wgh_A 9 SSHVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFG 88 (116)
T ss_dssp CCCCCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSS
T ss_pred cCCCCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCC
Confidence 3445677899999999999999999999999999999999 5575 6899999999999999999999999866
Q ss_pred --CEEEEeeecCCC
Q 005384 83 --HTLHMVVRQPVP 94 (699)
Q Consensus 83 --STLhLVlRlpgg 94 (699)
.+|||++|....
T Consensus 89 ~~~tlhLvlr~~~~ 102 (116)
T 1wgh_A 89 KTTVMHLVARETLP 102 (116)
T ss_dssp CEEEEEEEECSSCS
T ss_pred CceEEEEEccCCCC
Confidence 689999987653
No 50
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=136.68 Aligned_cols=79 Identities=35% Similarity=0.514 Sum_probs=75.4
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
...|+|+||+++|+++.++|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999998763
No 51
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.62 E-value=9.8e-16 Score=143.03 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=74.9
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
...|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|||++|+.++
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999875
No 52
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.61 E-value=1.7e-15 Score=145.59 Aligned_cols=77 Identities=36% Similarity=0.547 Sum_probs=73.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpggp 95 (699)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|+.++.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998754
No 53
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.61 E-value=1.3e-15 Score=136.11 Aligned_cols=79 Identities=27% Similarity=0.376 Sum_probs=75.4
Q ss_pred CCcEEEEEEeC---CCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 16 ETTIEIKIKTL---DSQTYTLRVDK-QVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 16 ~~tMqItVKtl---~GKt~tLeVdp-sdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
...|+|+|+++ +|+++.++|++ ++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 35699999999 89999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 005384 92 PVP 94 (699)
Q Consensus 92 pgg 94 (699)
.++
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 875
No 54
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=1.8e-15 Score=135.44 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=67.3
Q ss_pred EEEEEEeCC----CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 19 IEIKIKTLD----SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 19 MqItVKtl~----GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
..|.|+..+ ++++.|+|++++||.+||++|++++|+|+++|||||+||+|+|+++|++|+|++|++| +++++++.
T Consensus 16 ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred EEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 356666666 7799999999999999999999999999999999999999999999999999999999 66666654
No 55
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=3.6e-15 Score=128.32 Aligned_cols=78 Identities=26% Similarity=0.420 Sum_probs=71.4
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCC-----CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCC-ccccccccccCCCEEEEe
Q 005384 15 SETTIEIKIKTLDSQTYTLRVDKQ-----VPVPALKEQIASVTGVLSEQQRLICRGKVLKD-DQLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~tLeVdps-----dTV~dLKekIeektGIPpeqQRLIfkGKvLkD-dkTLSdYGIqdGSTLhLV 88 (699)
...+|+|+||+ .++++.++|+++ +||.+||++|++++++|+++|||+|+||.|+| +++|++|+|++|++|||+
T Consensus 4 ~~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 4 GSSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp CCSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred CCCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence 34579999999 588999999995 99999999999999999999999999999998 568999999999999999
Q ss_pred eecCC
Q 005384 89 VRQPV 93 (699)
Q Consensus 89 lRlpg 93 (699)
.+...
T Consensus 83 ~~~~~ 87 (92)
T 1wxv_A 83 GKKNS 87 (92)
T ss_dssp SCCSC
T ss_pred ecCCC
Confidence 87654
No 56
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=2.6e-15 Score=133.66 Aligned_cols=80 Identities=28% Similarity=0.339 Sum_probs=72.7
Q ss_pred CCCcEEEEEEeCCC---cEEEEEec--------C-CCCHHHHHHHHHHHh--CCCCCC-eEEEeCCeecCCccccccccc
Q 005384 15 SETTIEIKIKTLDS---QTYTLRVD--------K-QVPVPALKEQIASVT--GVLSEQ-QRLICRGKVLKDDQLLSAYHV 79 (699)
Q Consensus 15 s~~tMqItVKtl~G---Kt~tLeVd--------p-sdTV~dLKekIeekt--GIPpeq-QRLIfkGKvLkDdkTLSdYGI 79 (699)
....|+|+||+.++ +++.|+|+ + ++||.+||++|++++ ++++++ |||+|+||.|+|+++|++|+|
T Consensus 9 ~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i 88 (107)
T 1x1m_A 9 SLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGI 88 (107)
T ss_dssp CCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTC
T ss_pred cCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCC
Confidence 44569999999998 89999954 4 499999999999999 999999 999999999999999999999
Q ss_pred cCCCEEEEeeecCCC
Q 005384 80 EDGHTLHMVVRQPVP 94 (699)
Q Consensus 80 qdGSTLhLVlRlpgg 94 (699)
++|++|||+++.+..
T Consensus 89 ~~g~~i~lv~~~~~~ 103 (107)
T 1x1m_A 89 QPGSTVHVLRKSWSG 103 (107)
T ss_dssp CTTCEEEEEESSCCS
T ss_pred CCCCEEEEEeCCCCC
Confidence 999999999987653
No 57
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.59 E-value=2.7e-15 Score=138.81 Aligned_cols=83 Identities=17% Similarity=0.340 Sum_probs=74.4
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH------HhCCC--CCCeEEEeCCeecCCccccccccccCCC
Q 005384 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS------VTGVL--SEQQRLICRGKVLKDDQLLSAYHVEDGH 83 (699)
Q Consensus 12 se~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIee------ktGIP--peqQRLIfkGKvLkDdkTLSdYGIqdGS 83 (699)
+....+.|+|+||+++|+++.|+|++++||.+||++|++ +.++| +++|||||.||.|+|+++|++|+|++++
T Consensus 11 ~~~~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~ 90 (125)
T 2gow_A 11 SNVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK 90 (125)
T ss_dssp CSCCTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTS
T ss_pred cCCCCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC
Confidence 344566799999999999999999999999999999999 67874 7999999999999999999999999776
Q ss_pred --EEEEeeecCCC
Q 005384 84 --TLHMVVRQPVP 94 (699)
Q Consensus 84 --TLhLVlRlpgg 94 (699)
+|||+++...+
T Consensus 91 ~~tlhlv~r~~~~ 103 (125)
T 2gow_A 91 TTVMHLVARETLP 103 (125)
T ss_dssp EEEEEEEECSCCS
T ss_pred ceEEEEEecCCCC
Confidence 78999998753
No 58
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=3.2e-15 Score=130.68 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 12 se~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
....+++|+|+||+ .+++|.|+|++++||.+||++|++++++|+++|||+|+||.| |+.+|++|+|+++++|||+.+.
T Consensus 11 ~~~~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 11 GGVGKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CCCCCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred CCCCCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 34466789999996 689999999999999999999999999999999999999999 5559999999999999999876
Q ss_pred CC
Q 005384 92 PV 93 (699)
Q Consensus 92 pg 93 (699)
..
T Consensus 89 ~~ 90 (95)
T 1v86_A 89 IS 90 (95)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 59
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.59 E-value=2.5e-15 Score=129.84 Aligned_cols=77 Identities=26% Similarity=0.431 Sum_probs=72.0
Q ss_pred CCCcEEEEEEeCCCcEEEE-EecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCeecCCccccccccccCCCEEEEeee
Q 005384 15 SETTIEIKIKTLDSQTYTL-RVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~tL-eVdpsdTV~dLKekIeektGIPpeqQRLI---fkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
...+|+|+||+ .|++|.| +|++++||.+||++|++++++|+++|||+ |+||.|+|+.+|++|+|++|++|+|+..
T Consensus 4 ~~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 4 GSSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CCCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred CCceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 45679999998 7899999 99999999999999999999999999999 9999999999999999999999999976
Q ss_pred cC
Q 005384 91 QP 92 (699)
Q Consensus 91 lp 92 (699)
..
T Consensus 83 ~~ 84 (90)
T 1v5t_A 83 RE 84 (90)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 60
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=4.9e-15 Score=130.03 Aligned_cols=77 Identities=21% Similarity=0.389 Sum_probs=71.4
Q ss_pred CCCcEEEEEEeCCCcEE-EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 15 SETTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~-tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
...+|+|+||+ .|++| .|+|++++||.+||++|++++|+|+++|||+|+||.|+|+ +|++|+|++|++|+|+.....
T Consensus 4 ~~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~~ 81 (96)
T 1wgg_A 4 GSSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSADA 81 (96)
T ss_dssp CCCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCCC
T ss_pred CCcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecchh
Confidence 44679999997 68999 6999999999999999999999999999999999999999 999999999999999987653
No 61
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.57 E-value=2.5e-15 Score=138.08 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=64.3
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcccccccccc-------CCCEEEEeee
Q 005384 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVE-------DGHTLHMVVR 90 (699)
Q Consensus 19 MqItVKtl~GK-t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIq-------dGSTLhLVlR 90 (699)
|.|+|+. ++ ++.|+|++++||.+||++|+.+.|||+++|||+|+||.|+|+++|++|+|+ ++++|||++|
T Consensus 3 mfl~ir~--~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 3 VFLMIRR--HKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEE--BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred EEEEEec--CCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 4555554 54 699999999999999999999999999999999999999999999999999 7999999999
No 62
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.57 E-value=2.2e-15 Score=133.87 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=65.8
Q ss_pred CCCCcEEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHH-hCCC-CCCeEEEeCCeecCCccccccc--cccCCCEEEE
Q 005384 14 SSETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASV-TGVL-SEQQRLICRGKVLKDDQLLSAY--HVEDGHTLHM 87 (699)
Q Consensus 14 ~s~~tMqItVKtl~GK--t~tLeVdpsdTV~dLKekIeek-tGIP-peqQRLIfkGKvLkDdkTLSdY--GIqdGSTLhL 87 (699)
.+...|+|+||+++++ ++.|+|++++||.+||++|+++ .+++ +++|||||+||+|+|+++|++| +|+++++|||
T Consensus 19 ~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 19 FQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp ----CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 3456799999999998 6789999999999999999986 4665 4999999999999999999999 9999999998
Q ss_pred e
Q 005384 88 V 88 (699)
Q Consensus 88 V 88 (699)
+
T Consensus 99 v 99 (99)
T 2kdb_A 99 V 99 (99)
T ss_dssp C
T ss_pred C
Confidence 6
No 63
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.57 E-value=6e-15 Score=136.97 Aligned_cols=81 Identities=25% Similarity=0.410 Sum_probs=73.1
Q ss_pred CCCCcEEEEEEeCCCcEE-EEEecCCCCHHHHHHHHH-----HHhCCCC--CCeEEEeCCeecCCccccccccccCC---
Q 005384 14 SSETTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQIA-----SVTGVLS--EQQRLICRGKVLKDDQLLSAYHVEDG--- 82 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~-tLeVdpsdTV~dLKekIe-----ektGIPp--eqQRLIfkGKvLkDdkTLSdYGIqdG--- 82 (699)
.-++.|+|+||+++|+++ .+++++++||.+||++|+ ++.++|+ ++|||||.||.|+|+++|++|+|+++
T Consensus 12 ~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~ 91 (126)
T 1se9_A 12 EVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLA 91 (126)
T ss_dssp SSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCT
T ss_pred hhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCcc
Confidence 345789999999999988 699999999999999994 5667887 89999999999999999999999998
Q ss_pred ---CEEEEeeecCCC
Q 005384 83 ---HTLHMVVRQPVP 94 (699)
Q Consensus 83 ---STLhLVlRlpgg 94 (699)
.++||+++++++
T Consensus 92 ~~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 92 GAVTTMHVIIQAPVT 106 (126)
T ss_dssp TCCEEEEEEECCCSS
T ss_pred CCcEEEEEEeccCCc
Confidence 689999998864
No 64
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.1e-15 Score=135.32 Aligned_cols=75 Identities=37% Similarity=0.669 Sum_probs=69.4
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
.+.|+|+||+ +|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++.
T Consensus 26 ~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 26 AMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp ---CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred CcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 3568899998 89999999999999999999999999999999999999999999999999999999999999864
No 65
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.5e-14 Score=131.39 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=75.9
Q ss_pred CCCCCCCcEEEEEE-eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEee
Q 005384 11 GAESSETTIEIKIK-TLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 11 ~se~s~~tMqItVK-tl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
..+..+..|.|+|+ ...++.+.++++++.||.+||++|++++++|+++|||+|+||.|+|+.||.+|||++|.||||++
T Consensus 8 ~~~~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi 87 (118)
T 2daf_A 8 QESVEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEI 87 (118)
T ss_dssp CCCCCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEE
T ss_pred hhcccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEE
Confidence 34456667999988 55688999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 005384 90 RQPV 93 (699)
Q Consensus 90 Rlpg 93 (699)
+...
T Consensus 88 ~s~~ 91 (118)
T 2daf_A 88 FSTN 91 (118)
T ss_dssp EESC
T ss_pred ecCC
Confidence 9754
No 66
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.56 E-value=5.1e-15 Score=145.41 Aligned_cols=79 Identities=35% Similarity=0.489 Sum_probs=76.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
.-.|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++
T Consensus 103 ~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 103 HYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred ccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 3459999999999999999999999999999999999999999999999999999999999999999999999999875
No 67
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.56 E-value=6.1e-15 Score=139.94 Aligned_cols=78 Identities=36% Similarity=0.526 Sum_probs=71.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
..|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|++++
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 458999999999999999999999999999999999999999999999999999999999999999999999998763
No 68
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.56 E-value=4.7e-15 Score=136.32 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=67.1
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccC-------CCEEEEeee
Q 005384 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVED-------GHTLHMVVR 90 (699)
Q Consensus 19 MqItVKtl~GK-t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqd-------GSTLhLVlR 90 (699)
|.|||+...+| ++.++|++++||.+||++|+++.|+|+++|||||.||+|+|++||++|+|++ +++|||++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 45666655555 7889999999999999999999999999999999999999999999999999 999999999
Q ss_pred c
Q 005384 91 Q 91 (699)
Q Consensus 91 l 91 (699)
.
T Consensus 81 ~ 81 (118)
T 4ajy_B 81 A 81 (118)
T ss_dssp C
T ss_pred c
Confidence 7
No 69
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.55 E-value=1.2e-14 Score=130.71 Aligned_cols=78 Identities=22% Similarity=0.398 Sum_probs=73.5
Q ss_pred CcEEEEEEeC----------CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEE
Q 005384 17 TTIEIKIKTL----------DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLH 86 (699)
Q Consensus 17 ~tMqItVKtl----------~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLh 86 (699)
..|+|+|+.. +|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|++|++||
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 4689999986 478999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCC
Q 005384 87 MVVRQPVP 94 (699)
Q Consensus 87 LVlRlpgg 94 (699)
|++++.++
T Consensus 104 lv~rl~GG 111 (115)
T 1we7_A 104 LALKERSG 111 (115)
T ss_dssp EEECCCSC
T ss_pred EEEEcCCC
Confidence 99999875
No 70
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.55 E-value=1.4e-14 Score=132.63 Aligned_cols=78 Identities=36% Similarity=0.526 Sum_probs=74.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
..|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+++++++
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 458999999999999999999999999999999999999999999999999999999999999999999999998763
No 71
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.54 E-value=4.6e-16 Score=142.54 Aligned_cols=76 Identities=37% Similarity=0.553 Sum_probs=0.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+.+|++|+|++|++|||++++.++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999875
No 72
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.53 E-value=2.4e-14 Score=129.13 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=72.0
Q ss_pred CCCCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccc-cCCCEEEEeee
Q 005384 14 SSETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVR 90 (699)
Q Consensus 14 ~s~~tMqItVKtl~G--Kt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGI-qdGSTLhLVlR 90 (699)
+.+-.|+|+|+...+ .++.|+|++++||.+||++|++++|+|+++|||+|+||.|+|+++|.+||| ++|++|||++-
T Consensus 20 ~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 20 TQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred CCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 345568999999874 789999999999999999999999999999999999999999999999999 59999999986
Q ss_pred cC
Q 005384 91 QP 92 (699)
Q Consensus 91 lp 92 (699)
..
T Consensus 100 ~~ 101 (105)
T 4dbg_A 100 SA 101 (105)
T ss_dssp CC
T ss_pred ec
Confidence 43
No 73
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.52 E-value=3.7e-14 Score=121.47 Aligned_cols=74 Identities=31% Similarity=0.503 Sum_probs=67.5
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeee
Q 005384 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
..++.+.++ ++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+..
T Consensus 10 ~~~~~~~~~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 10 HSTIKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp CCCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred CCcEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 345665554 48999999999999999999999999999999999999999999999999999999999999874
No 74
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.48 E-value=2.8e-15 Score=142.57 Aligned_cols=77 Identities=36% Similarity=0.547 Sum_probs=0.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpggp 95 (699)
|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+|+.|+|+.+|++|+|++|++|||++++.++.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998864
No 75
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.48 E-value=2.9e-14 Score=152.34 Aligned_cols=80 Identities=29% Similarity=0.496 Sum_probs=71.8
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH---HhCCCCCCeEEEeCCeecCCccccccccccCCCEE-EEeee
Q 005384 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS---VTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTL-HMVVR 90 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIee---ktGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTL-hLVlR 90 (699)
.+.+|+|+||+++|++|.|+|++++||.+||++|++ +.+|++++|||+|+||+|+|+++|++|+|++|++| ||+.|
T Consensus 4 ~~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 4 GSSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp --CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred CCceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence 346799999999999999999999999999999999 67799999999999999999999999999999998 66666
Q ss_pred cCCC
Q 005384 91 QPVP 94 (699)
Q Consensus 91 lpgg 94 (699)
.+++
T Consensus 84 ~~~~ 87 (368)
T 1oqy_A 84 TKAG 87 (368)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5544
No 76
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=9.8e-14 Score=123.84 Aligned_cols=75 Identities=11% Similarity=0.151 Sum_probs=68.3
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCCccccccccccCCCEEEEeeecCC
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIf--kGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
.|.++++++.|+++.|+|++++||.+||++|++++|||+++|||+| .|+ |+|+.+|++|+|++|++|||++..-.
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 5777777778999999999999999999999999999999999996 455 99999999999999999999987654
No 77
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.3e-13 Score=119.52 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=65.6
Q ss_pred CCcEEEEEEeCCCcEE--EE-EecCCCCHHHHHHHHHHH-hCCCCCCeEEEeC--CeecCCccccccccccCCCEEEE
Q 005384 16 ETTIEIKIKTLDSQTY--TL-RVDKQVPVPALKEQIASV-TGVLSEQQRLICR--GKVLKDDQLLSAYHVEDGHTLHM 87 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~--tL-eVdpsdTV~dLKekIeek-tGIPpeqQRLIfk--GKvLkDdkTLSdYGIqdGSTLhL 87 (699)
-.+|+|+||++.|+++ .| +|++++||.+||++|+++ .++++++|||+|. ||.|+|+++|++|+|+++++|||
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 4459999999988775 58 999999999999999994 8999999999976 99999999999999999999876
No 78
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.44 E-value=3.2e-13 Score=119.06 Aligned_cols=76 Identities=20% Similarity=0.375 Sum_probs=68.1
Q ss_pred CCCCCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC--Ce---ec-CCccccccccccCCCE
Q 005384 13 ESSETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR--GK---VL-KDDQLLSAYHVEDGHT 84 (699)
Q Consensus 13 e~s~~tMqItVKtl~G--Kt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfk--GK---vL-kDdkTLSdYGIqdGST 84 (699)
-.++..|.|+|+...+ +.++++|++++||.+||++|+.++|+|+++|||+|. |+ .| +|+++|++|+|++|++
T Consensus 10 ~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gst 89 (95)
T 2kjr_A 10 HGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLR 89 (95)
T ss_dssp CCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCE
T ss_pred cCCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCE
Confidence 3457789999998765 488999999999999999999999999999999998 55 44 8999999999999999
Q ss_pred EEEe
Q 005384 85 LHMV 88 (699)
Q Consensus 85 LhLV 88 (699)
|||+
T Consensus 90 ihlv 93 (95)
T 2kjr_A 90 LHVV 93 (95)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
No 79
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.43 E-value=1.4e-13 Score=119.26 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=65.9
Q ss_pred cEEEEEEeC--CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe-------CCeecCCccccccccccCCCEEEEe
Q 005384 18 TIEIKIKTL--DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC-------RGKVLKDDQLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 18 tMqItVKtl--~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIf-------kGKvLkDdkTLSdYGIqdGSTLhLV 88 (699)
.++|.|... +.+.+.+++++++||.+||++|+.++|+|+++|||+| .|+.|+|+++|++|+|++|++|||+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 356666543 4567889999999999999999999999999999997 4789999999999999999999999
Q ss_pred eecC
Q 005384 89 VRQP 92 (699)
Q Consensus 89 lRlp 92 (699)
-+.|
T Consensus 82 d~~P 85 (86)
T 4b6w_A 82 DLQP 85 (86)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 7654
No 80
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.42 E-value=3.2e-13 Score=141.41 Aligned_cols=80 Identities=35% Similarity=0.538 Sum_probs=74.0
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 13 e~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
......|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|++
T Consensus 228 ~~~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 228 AGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp ESSCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred cCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999863
No 81
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.41 E-value=3.8e-13 Score=120.00 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=69.0
Q ss_pred CcEEEEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-----------e----cCCcccccccccc
Q 005384 17 TTIEIKIKTLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRGK-----------V----LKDDQLLSAYHVE 80 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVd-psdTV~dLKekIeektGIPpeqQRLIfkGK-----------v----LkDdkTLSdYGIq 80 (699)
..|.|+||+.+|+. .|+|+ +++||.+||++|++++++|+++|||+|.|+ . ++|+++|++|+|+
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 44999999999976 79999 999999999999999999999999999988 4 5889999999999
Q ss_pred CCCEEEEeeecCC
Q 005384 81 DGHTLHMVVRQPV 93 (699)
Q Consensus 81 dGSTLhLVlRlpg 93 (699)
+|++|||+.....
T Consensus 85 ~G~~L~l~~~~~~ 97 (107)
T 1wf9_A 85 HGSMVYLAYEGER 97 (107)
T ss_dssp TTCEEECCCSSCC
T ss_pred CCCEEEEEeCCCC
Confidence 9999999987543
No 82
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.39 E-value=1e-12 Score=116.40 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=67.3
Q ss_pred CCCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe---e----cCCccccccccccCCCEE
Q 005384 15 SETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK---V----LKDDQLLSAYHVEDGHTL 85 (699)
Q Consensus 15 s~~tMqItVKtl~G--Kt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGK---v----LkDdkTLSdYGIqdGSTL 85 (699)
.+..+.|+|++... +.++++|++++||.+||++|+.++|+|+++|||+|.|+ . ++|+++|++|+|++|++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 45668999987544 47899999999999999999999999999999999884 3 488999999999999999
Q ss_pred EEeee
Q 005384 86 HMVVR 90 (699)
Q Consensus 86 hLVlR 90 (699)
||+-.
T Consensus 91 hlvd~ 95 (97)
T 2kj6_A 91 HIIDL 95 (97)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99853
No 83
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=1e-12 Score=115.65 Aligned_cols=81 Identities=16% Similarity=0.300 Sum_probs=75.8
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
+..+.|+|+||+.+|+.+.++|.+++++..||++++++.+++++++||+|.|+.|++++|+++|++++|++|+|++++.+
T Consensus 3 ~~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~G 82 (94)
T 2io1_B 3 HMNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 82 (94)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 005384 94 P 94 (699)
Q Consensus 94 g 94 (699)
+
T Consensus 83 G 83 (94)
T 2io1_B 83 G 83 (94)
T ss_dssp S
T ss_pred C
Confidence 6
No 84
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=1.3e-12 Score=113.77 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=66.9
Q ss_pred CCcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---ee----cCCccccccccccCCCEEEE
Q 005384 16 ETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KV----LKDDQLLSAYHVEDGHTLHM 87 (699)
Q Consensus 16 ~~tMqItVKtl~GK-t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkG---Kv----LkDdkTLSdYGIqdGSTLhL 87 (699)
...|.|+|++.... .+.++|++++||.+||++|+.++|+|+++|||+|.| +. ++|+++|++|+|++|++|||
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 34599999986543 688999999999999999999999999999999987 43 58999999999999999999
Q ss_pred eeec
Q 005384 88 VVRQ 91 (699)
Q Consensus 88 VlRl 91 (699)
+-..
T Consensus 85 ~d~~ 88 (95)
T 1v6e_A 85 IDHS 88 (95)
T ss_dssp BCCS
T ss_pred EECC
Confidence 8643
No 85
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.34 E-value=2.9e-12 Score=116.86 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=67.2
Q ss_pred CcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---ee----cCCccccccccccCCCEEEEe
Q 005384 17 TTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KV----LKDDQLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 17 ~tMqItVKtl~GK-t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkG---Kv----LkDdkTLSdYGIqdGSTLhLV 88 (699)
..|.|+|++.... .+.++|++++||.+||++|+.++|+|+++|||+|.| +. ++|+++|++|+|++|++|||+
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 4699999986553 688999999999999999999999999999999987 42 489999999999999999999
Q ss_pred eecC
Q 005384 89 VRQP 92 (699)
Q Consensus 89 lRlp 92 (699)
...+
T Consensus 85 d~~p 88 (122)
T 1t0y_A 85 DVTG 88 (122)
T ss_dssp ECTT
T ss_pred eCCC
Confidence 7543
No 86
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.33 E-value=1.1e-13 Score=136.31 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=0.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCCC
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpggp 95 (699)
|+|+||+++|+++.|+|++++||.+||++|+++++||+++|||+|.|++|+|+.+|+ +++||||++|+.++.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 899999999999999999999999999999999999999999999999999999998 899999999998764
No 87
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.28 E-value=1.4e-11 Score=107.93 Aligned_cols=79 Identities=16% Similarity=0.315 Sum_probs=75.4
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
...|+|+||+.+|+.+.+.|.+++++..||++++++.|+++..+||+|.|+.|.+++|+++|++++|++|++++++.++
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999998875
No 88
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=2.5e-11 Score=108.92 Aligned_cols=81 Identities=16% Similarity=0.322 Sum_probs=77.1
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
....|.|+|+..+|+.+.|.|.+++++..||++++++.+++++.+||+|.|+.|.+++|+.+|++++|++|+|++++.++
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred C
Q 005384 95 S 95 (699)
Q Consensus 95 p 95 (699)
.
T Consensus 101 ~ 101 (104)
T 1wz0_A 101 P 101 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 89
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.26 E-value=1.4e-11 Score=108.00 Aligned_cols=79 Identities=16% Similarity=0.325 Sum_probs=73.8
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
....|.|+|+..+|+.+.+.|.+++++..||++++++.|++++.+||+|.|+.|.++.|+.+|++++|++|++++++.+
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999998865
No 90
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.23 E-value=1e-11 Score=106.22 Aligned_cols=72 Identities=22% Similarity=0.354 Sum_probs=64.7
Q ss_pred EEEEEEeCCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeC--CeecC---CccccccccccCCCEEEEeeec
Q 005384 19 IEIKIKTLDSQTYTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICR--GKVLK---DDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 19 MqItVKtl~GKt~tLe-VdpsdTV~dLKekIeektGIPpeqQRLIfk--GKvLk---DdkTLSdYGIqdGSTLhLVlRl 91 (699)
|+|+||+.+|+. .++ |++++||.+||++|++++++++++|||+|. +|.|+ |+++|++|||.+|++|||....
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 789999999965 477 999999999999999999999999999987 48874 6899999999999999998664
No 91
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.23 E-value=9.8e-12 Score=130.52 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=68.9
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCeecCCccccccccccCCCEEEEeeecC
Q 005384 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI---fkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
.++|+|+||+ .|++|.++|++++||.+||++|++++|||+++|||+ |+||.|+|+.+|++|+|++|++|||+....
T Consensus 3 ~~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 3 VKEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp -CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 4569999998 799999999999999999999999999999999999 899999999999999999999999996543
No 92
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.21 E-value=4.6e-11 Score=108.37 Aligned_cols=82 Identities=13% Similarity=0.279 Sum_probs=77.1
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 13 e~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
+.....|.|+|++.+|+.+.|.|.+++++..||++++++.+++++.+||+|.|+.|.+++|+.+|++++|++|+|++.+.
T Consensus 21 ~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~ 100 (110)
T 2k8h_A 21 KEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQT 100 (110)
T ss_dssp CCCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCC
T ss_pred CCCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEccc
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 005384 93 VP 94 (699)
Q Consensus 93 gg 94 (699)
++
T Consensus 101 Gg 102 (110)
T 2k8h_A 101 GG 102 (110)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 93
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.21 E-value=5.2e-11 Score=107.47 Aligned_cols=81 Identities=22% Similarity=0.298 Sum_probs=74.8
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 12 se~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
.......|.|+|++ +|+.+.+.|.+++++..||++++++.|+++..+||+|.|+.|.+++|.++|++++|++|++++++
T Consensus 25 ~~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q 103 (106)
T 2eke_C 25 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 103 (106)
T ss_dssp CCCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 34456779999999 99999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 005384 92 PV 93 (699)
Q Consensus 92 pg 93 (699)
.+
T Consensus 104 ~G 105 (106)
T 2eke_C 104 IG 105 (106)
T ss_dssp --
T ss_pred cc
Confidence 65
No 94
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.20 E-value=4.8e-11 Score=99.42 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=69.3
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEee
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
.|+|+|++.+|+.+.+.|.+++++..||++++++.|+++..+||+|.|+.|.+++|.++|++++|++|++++
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 389999999999999999999999999999999999999999999999999999999999999999999974
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.17 E-value=1.2e-10 Score=98.93 Aligned_cols=74 Identities=11% Similarity=0.294 Sum_probs=70.3
Q ss_pred CCCcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEe
Q 005384 15 SETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 15 s~~tMqItVKtl~GK-t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLV 88 (699)
....|.|+|+..+|+ .+.+.|.+++++..||++++++.|++++++||+|.|+.|.+++|+++|++++|++|+++
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 345699999999996 89999999999999999999999999999999999999999999999999999999986
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.03 E-value=7.2e-10 Score=96.69 Aligned_cols=78 Identities=24% Similarity=0.282 Sum_probs=67.1
Q ss_pred CCCcEEEEEEe---CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC------e-ec-CCccccccccccCCC
Q 005384 15 SETTIEIKIKT---LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG------K-VL-KDDQLLSAYHVEDGH 83 (699)
Q Consensus 15 s~~tMqItVKt---l~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkG------K-vL-kDdkTLSdYGIqdGS 83 (699)
....+.|+|++ .+++.+.+.+.+++||.+||.+|+..+|+|+..|||.|.+ . .| +|.++|++|+|.+|+
T Consensus 6 ~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~ 85 (97)
T 1wjn_A 6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGD 85 (97)
T ss_dssp SSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred cCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence 34568898886 4688899999999999999999999999999999999873 2 24 677999999999999
Q ss_pred EEEEeeecC
Q 005384 84 TLHMVVRQP 92 (699)
Q Consensus 84 TLhLVlRlp 92 (699)
+|||....+
T Consensus 86 ~I~V~d~~p 94 (97)
T 1wjn_A 86 CLLVRWSGP 94 (97)
T ss_dssp EEEEECCSS
T ss_pred EEEEEecCC
Confidence 999987543
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.82 E-value=1.6e-08 Score=92.61 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=73.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
...|.|+|+..+|+.+.+.|.+++++..|++.++++.|+++..+||+|.|+.|.++.|..+|++++|++|++++.+.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~ 114 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQC 114 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999998764
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.66 E-value=6.3e-08 Score=96.20 Aligned_cols=81 Identities=22% Similarity=0.301 Sum_probs=76.1
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
+....|+|+|+. +|+.+.+.|.+++++..||+.++++.|+++.++||+|.|+.|.+++|..+|++++|++|++++.+.+
T Consensus 25 ~~~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 25 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 103 (200)
T ss_dssp CCCCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSC
T ss_pred CCCCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCc
Confidence 456779999985 8999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 005384 94 PS 95 (699)
Q Consensus 94 gp 95 (699)
+.
T Consensus 104 g~ 105 (200)
T 3pge_A 104 GG 105 (200)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.66 E-value=3.6e-08 Score=97.70 Aligned_cols=80 Identities=21% Similarity=0.283 Sum_probs=74.5
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
+....|.|+|+. +|+.+.+.|.+++++..||+.++++.|+++..+||+|+|+.|.+++|..+|++++|++|++++.+.+
T Consensus 53 dp~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 53 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp --CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred CCCCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 456779999985 8999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred C
Q 005384 94 P 94 (699)
Q Consensus 94 g 94 (699)
+
T Consensus 132 G 132 (207)
T 3tix_A 132 G 132 (207)
T ss_dssp T
T ss_pred C
Confidence 5
No 100
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.38 E-value=4.4e-08 Score=98.22 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=1.0
Q ss_pred CCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeee
Q 005384 11 GAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 11 ~se~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
........|.|+| ..+|+.+.++|.+++++..||+.++++.|++++.+||+|+|+.|.+++|.++++++||++|++++.
T Consensus 14 ~~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~le 92 (227)
T 3v7o_A 14 PEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEec
Confidence 3444567799999 778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 005384 91 QPVPS 95 (699)
Q Consensus 91 lpggp 95 (699)
+.++.
T Consensus 93 Q~GG~ 97 (227)
T 3v7o_A 93 QIGGL 97 (227)
T ss_dssp ---CC
T ss_pred ccCCc
Confidence 98863
No 101
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.25 E-value=4.6e-07 Score=77.44 Aligned_cols=71 Identities=13% Similarity=0.245 Sum_probs=59.9
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCee---c--CCccccccccccCCCEEEEe
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKV---L--KDDQLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKv---L--kDdkTLSdYGIqdGSTLhLV 88 (699)
+.|.|.||+.+| ++.|+|++++||.+||++|+++++++++.|.|.+.-.. | .++.+|+++||++|++|+|.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 348899999877 67788999999999999999999999988877655433 3 47789999999999999874
No 102
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.19 E-value=6.4e-06 Score=73.35 Aligned_cols=76 Identities=12% Similarity=0.319 Sum_probs=70.4
Q ss_pred CCCCCcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEe
Q 005384 13 ESSETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 13 e~s~~tMqItVKtl~GK-t~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLV 88 (699)
.+....|.|+|+..+++ .+.+.|.+++++..|.+..+++.++++...||+|.|..|.++.|..++++++|++|.++
T Consensus 20 ~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 20 TETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 34567799999998884 78999999999999999999999999999999999999999999999999999999885
No 103
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.08 E-value=1.6e-05 Score=68.87 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=68.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeCCeecCCccccccccccCCCEEEEee
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpe-qQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
..|.+.++......+.+.|.++.+|.+|-+..+++.+|+++ ..||.|.|..|+.+.++.+|++++|+.|.+++
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45788888888888999999999999999999999999998 89999999999999999999999999999986
No 104
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.05 E-value=1.1e-05 Score=79.82 Aligned_cols=81 Identities=23% Similarity=0.308 Sum_probs=75.2
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
-+.+.|.|+|+. +++.+.++|..++++..||+..+++.|++++++||+|.|+.+.++++..++.++++++|.++.++.+
T Consensus 17 ~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp -CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred CCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 355779999998 7888899999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 005384 94 PS 95 (699)
Q Consensus 94 gp 95 (699)
+.
T Consensus 96 g~ 97 (209)
T 3uf8_A 96 GS 97 (209)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 105
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.91 E-value=1.5e-06 Score=93.06 Aligned_cols=82 Identities=22% Similarity=0.288 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 12 se~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
...+...|.|+|+. +|+.+.+.|..++++..||+.++++.|++++.+|++|+|+.|.+++|.+++++++|++|++++++
T Consensus 15 ~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q 93 (360)
T 3ix6_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhcc
Confidence 33456679999998 68888999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 005384 92 PVP 94 (699)
Q Consensus 92 pgg 94 (699)
.++
T Consensus 94 ~g~ 96 (360)
T 3ix6_A 94 IGG 96 (360)
T ss_dssp ---
T ss_pred Cch
Confidence 774
No 106
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.79 E-value=3e-06 Score=90.06 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
....|.|+|+. +++.+.+.|..++++..||+..+++.|+++.++||+|.|+.|.+++|.+++++++|++|++++.+.++
T Consensus 27 ~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 27 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 45678899988 77888899999999999999999999999999999999999999999999999999999999998775
No 107
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.75 E-value=0.00015 Score=64.70 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=71.0
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
+....|.|+|+. +|....+.|..++....|++..+++.|+.+...|++|.|..+.++.|-.+++++++++|.+++-.
T Consensus 17 ~~~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 17 ETPRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp SCCCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred CCCCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 345559999996 78899999999999999999999999999999999999999999999999999999999998743
No 108
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.69 E-value=0.00012 Score=65.18 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=52.7
Q ss_pred EEEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec--CCccccccccc-cCCCEEEEee
Q 005384 20 EIKIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL--KDDQLLSAYHV-EDGHTLHMVV 89 (699)
Q Consensus 20 qItVKtl-~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvL--kDdkTLSdYGI-qdGSTLhLVl 89 (699)
-|+|=.+ .++.+.+.|.+++||..||++|++++||++++|+|+|.||.| +.++.-..|-- ....-|.|+-
T Consensus 14 vvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 14 VIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp EEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred eEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 3444444 467788999999999999999999999999999999999865 45555566643 2334455543
No 109
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.39 E-value=0.00037 Score=60.39 Aligned_cols=71 Identities=21% Similarity=0.341 Sum_probs=61.1
Q ss_pred CcEEEEEEe--CCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEeCCeecCCccccccccccCCCEEEE
Q 005384 17 TTIEIKIKT--LDSQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (699)
Q Consensus 17 ~tMqItVKt--l~GKt~tLeVdpsdTV~dLKekIeektGIPp-----eqQRLIfkGKvLkDdkTLSdYGIqdGSTLhL 87 (699)
+-|.|+|.. -.++.|.|++....||+.|++.+.+.+++.. ...|+.-++..|.+++.|+||+|.+|+.|.+
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 447777775 4689999999999999999999999998665 2347788899999999999999999999876
No 110
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.35 E-value=0.00019 Score=66.92 Aligned_cols=69 Identities=26% Similarity=0.319 Sum_probs=58.1
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-------------------------------------CeEEE
Q 005384 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-------------------------------------QQRLI 62 (699)
Q Consensus 20 qItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpe-------------------------------------qQRLI 62 (699)
.|+|+.++|+..++.|+.+.+|.+++..|+.+.||+.. +++|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58999999999999999999999999999999998854 34443
Q ss_pred eC--CeecCCccccccccccCCCEEEEe
Q 005384 63 CR--GKVLKDDQLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 63 fk--GKvLkDdkTLSdYGIqdGSTLhLV 88 (699)
.. ...|+++++|.++||.++++|.|-
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 21 256778899999999999997664
No 111
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.10 E-value=0.00095 Score=59.00 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=70.5
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCC
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
-|.|+|-..+++..++.|.+++++.++-++.++++++.+++-.|.|++|.|+-+..+.-.||.++++|.|+.....
T Consensus 9 ~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s 84 (90)
T 2al3_A 9 GSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS 84 (90)
T ss_dssp -CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred ccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999976543
No 112
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.89 E-value=0.0046 Score=52.59 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=63.1
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeec---CCccccccccccCCCEEEEee
Q 005384 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVL---KDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--fkGKvL---kDdkTLSdYGIqdGSTLhLVl 89 (699)
++...+|.||..+|+.+.-.+..++||.+|..-|.. .+......+|+ |-.|.| +.+++|.++|+.+..+|+|-.
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 456789999999999998899999999999999988 56777888888 457888 346899999999999888754
No 113
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=96.75 E-value=2.7e-05 Score=69.11 Aligned_cols=42 Identities=5% Similarity=-0.072 Sum_probs=37.7
Q ss_pred CCCC--CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 101 HNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 101 qI~v--~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
++++ .+|+.+.+.|.+++||+.||.+|+ ++|+|+++|||+|+
T Consensus 23 qI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~ 67 (93)
T 3plu_A 23 EVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG 67 (93)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC
Confidence 4544 578999999999999999999999 99999999999873
No 114
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.69 E-value=0.012 Score=52.77 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=65.7
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC--C-ccccccccccCCCEEEEe
Q 005384 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK--D-DQLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--fkGKvLk--D-dkTLSdYGIqdGSTLhLV 88 (699)
......+|.||..+|+.+.-.+..++||.+|.+-|....+.+.....|+ |--|.|. | +++|.+.|+.+..+|++.
T Consensus 9 ~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~ 88 (109)
T 2dzk_A 9 DRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLL 88 (109)
T ss_dssp CCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEE
Confidence 3445689999999999999999999999999999999887776777777 4577785 3 689999999998888777
Q ss_pred eecC
Q 005384 89 VRQP 92 (699)
Q Consensus 89 lRlp 92 (699)
....
T Consensus 89 ~~~~ 92 (109)
T 2dzk_A 89 PAGR 92 (109)
T ss_dssp CCSS
T ss_pred ECcC
Confidence 6543
No 115
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.65 E-value=0.0002 Score=64.09 Aligned_cols=36 Identities=11% Similarity=-0.003 Sum_probs=33.7
Q ss_pred CCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 107 g~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
++.+.+.|++++||..||.+|+ ++|+|+++|||||+
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~ 65 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVIN 65 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC
Confidence 5678899999999999999999 99999999999977
No 116
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=96.52 E-value=0.0004 Score=68.51 Aligned_cols=42 Identities=5% Similarity=-0.020 Sum_probs=0.0
Q ss_pred CCCC--CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 101 HNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 101 qI~v--~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
+|++ .+|++++++|++++||++||.+|+ .+|||+++|||||+
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~ 46 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNN 46 (189)
T ss_dssp ---------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEec
Confidence 4555 558899999999999999999999 99999999999985
No 117
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=96.49 E-value=5.1e-05 Score=64.05 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=38.2
Q ss_pred ccCCCEEEEeeecCCCCCCCCCCCCC--CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 79 VEDGHTLHMVVRQPVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 79 IqdGSTLhLVlRlpggpass~~qI~v--~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
+.++++++++++.+. .+.+++ ..|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 2 ~~~~~~~~~~~~~~~-----~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 63 (88)
T 4eew_A 2 MEPNDSTSTAVEEPD-----SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 63 (88)
T ss_dssp -------------CC-----EEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCCceEEeecCCC-----eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 345566666665432 345554 567888899999999999999999 89999999999873
No 118
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.24 E-value=0.00014 Score=65.17 Aligned_cols=38 Identities=5% Similarity=-0.115 Sum_probs=35.6
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|+.+.+.|.+++||++||.+|+ ++|+|+++|||+|+
T Consensus 36 l~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 36 RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp SSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 558889999999999999999999 99999999999977
No 119
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.14 E-value=0.017 Score=53.15 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=63.3
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeec--CC-ccccccccccCCCEEEEee
Q 005384 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVL--KD-DQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--fkGKvL--kD-dkTLSdYGIqdGSTLhLVl 89 (699)
.....+|.||..+|+.+.-.+..++||.+|..-|... +.......|+ |-.|.| .| +++|.++++.+..+|+|..
T Consensus 40 ~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp SSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 4566899999999999999999999999999999887 7777788887 557888 33 6899999999988887764
Q ss_pred e
Q 005384 90 R 90 (699)
Q Consensus 90 R 90 (699)
.
T Consensus 119 ~ 119 (124)
T 1wj4_A 119 S 119 (124)
T ss_dssp C
T ss_pred c
Confidence 3
No 120
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.00029 Score=62.09 Aligned_cols=65 Identities=14% Similarity=0.249 Sum_probs=36.2
Q ss_pred ccccccccccCCCEEEEeeecCCCCCCCCCCCCC-CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 71 DQLLSAYHVEDGHTLHMVVRQPVPSSSDGTHNLP-GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 71 dkTLSdYGIqdGSTLhLVlRlpggpass~~qI~v-~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
...+++|.|. +|.+|.++..- .+.+++ ..++.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 7 ~~~~~~~~~~--~t~~l~l~~~m-----~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 73 (101)
T 3m63_B 7 HHPMSDYDIP--TTENLYFQGAM-----SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 73 (101)
T ss_dssp -----------------------------CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEET
T ss_pred cCCccccCCC--cceeecccCCc-----EEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence 4578899884 56666553321 122333 367888899999999999999999 89999999999874
No 121
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.00033 Score=60.75 Aligned_cols=38 Identities=8% Similarity=-0.076 Sum_probs=33.5
Q ss_pred CCCCccccccc--cCCchhhccccc-c-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVA--PSVVIETFNLPD-R-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~--psdTVe~VK~~I-q-~eGIPpdqQRLIfa 142 (699)
..++++.+.|+ +++||..||.+| + ++|+|+++|||||+
T Consensus 9 l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~ 50 (87)
T 2lxa_A 9 IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK 50 (87)
T ss_dssp CSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEET
T ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEEC
Confidence 55777788766 999999999999 7 89999999999985
No 122
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.82 E-value=0.072 Score=47.64 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=61.8
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC--CccccccccccCCCEEEEeee
Q 005384 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK--DDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI--fkGKvLk--DdkTLSdYGIqdGSTLhLVlR 90 (699)
....+|.||..+|+.+.-.+..++||.+|..-|..+ +..+...+|+ |-.|.|. .+++|.++||.+..+|+|..+
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 567999999999999988999999999999999865 5566778886 5578885 468999999999888877554
No 123
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=95.38 E-value=0.00073 Score=62.29 Aligned_cols=34 Identities=6% Similarity=-0.089 Sum_probs=31.5
Q ss_pred ccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 109 titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
++.+.|++++||.+||.+|+ ++|||+++|||||+
T Consensus 13 TI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~ 47 (118)
T 4ajy_B 13 TIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKD 47 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeC
Confidence 56789999999999999999 99999999999974
No 124
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=94.36 E-value=0.0027 Score=51.60 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=34.4
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|+.+.+.|.+++||..||.+|+ ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 46 (76)
T 3b1l_X 8 NSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFA 46 (76)
Confidence 457777899999999999999999 89999999999985
No 125
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.23 E-value=0.047 Score=50.29 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=58.2
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHh-CCCCCCeEEE--eCCeecCC-ccccccccccCCCEEE
Q 005384 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVT-GVLSEQQRLI--CRGKVLKD-DQLLSAYHVEDGHTLH 86 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeekt-GIPpeqQRLI--fkGKvLkD-dkTLSdYGIqdGSTLh 86 (699)
.....+|.||..+|+.+.-.+..++||.+|++-|.... +.......|+ |-.|.|.| +++|.++|+.+..+|.
T Consensus 49 ~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 49 AEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp TSCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 44568999999999999999999999999999998863 3445667777 55788865 5899999999855443
No 126
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=95.14 E-value=0.00049 Score=56.73 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=34.5
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|+.+.+.|.+++||..||.+|+ .+|+|+++|||+|.
T Consensus 12 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 50 (79)
T 3phx_B 12 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (79)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEEC
Confidence 457788899999999999999999 89999999999874
No 127
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=94.96 E-value=0.0017 Score=56.95 Aligned_cols=35 Identities=6% Similarity=-0.016 Sum_probs=32.3
Q ss_pred CccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 108 ~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
+.+.+.|.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 28 ~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 28 VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 467789999999999999999 99999999999985
No 128
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=94.95 E-value=0.003 Score=54.42 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=30.6
Q ss_pred CccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 108 ~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
+.....+.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 15 ~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 15 RVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp CEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred eEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 334567899999999999999 99999999999963
No 129
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=94.86 E-value=0.00062 Score=57.57 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=34.5
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|+.+.+.|.+++||..||.+|+ +.|+|+++|||+|.
T Consensus 13 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 51 (90)
T 4dwf_A 13 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 51 (90)
T ss_dssp TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 457778899999999999999999 89999999999984
No 130
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=94.82 E-value=0.0049 Score=56.15 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|+++.+.|.+++||..||.+|+ ..|||+++|+|+|.
T Consensus 8 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (128)
T 3u5e_m 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (128)
T ss_dssp ---------------------------------------
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEEC
Confidence 457788899999999999999999 89999999999974
No 131
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=94.81 E-value=0.00064 Score=57.91 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=35.0
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|+.+.+.|.+++||+.||.+|+ .+|+|+++|||+|.
T Consensus 18 l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 56 (84)
T 2kk8_A 18 LNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD 56 (84)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred cCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 567888899999999999999999 89999999999975
No 132
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.77 E-value=0.079 Score=46.66 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=61.3
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC---CeecCCccccccccccC
Q 005384 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR---GKVLKDDQLLSAYHVED 81 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfk---GKvLkDdkTLSdYGIqd 81 (699)
-++.++++.|....-++..++|+|..++.+|--.|++|+.+.++.-.|.-. +..|+-+++|.||||++
T Consensus 6 ~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 6 SGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred CCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 356889999999988889999999999999999999999999999888754 45888999999999987
No 133
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=94.73 E-value=0.0011 Score=61.14 Aligned_cols=34 Identities=9% Similarity=-0.081 Sum_probs=31.7
Q ss_pred ccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 109 titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
++.+.|++++||.+||.+|+ ++|||+++|||||+
T Consensus 13 ti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~ 47 (118)
T 2fnj_B 13 TIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKD 47 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 47789999999999999999 99999999999965
No 134
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.72 E-value=0.14 Score=46.83 Aligned_cols=74 Identities=23% Similarity=0.317 Sum_probs=52.5
Q ss_pred CcEEEEEEeCC--CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC----CeecCCc-----------
Q 005384 17 TTIEIKIKTLD--SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR----GKVLKDD----------- 71 (699)
Q Consensus 17 ~tMqItVKtl~--GKt~tLeVdpsdTV~dLKekIeekt--GIP------peqQRLIfk----GKvLkDd----------- 71 (699)
.+|.|+|-..+ +..+.+.|-..+||.++|+||.+.. ++| +++..|-+. |+.|.|.
T Consensus 10 ~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wk 89 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWK 89 (111)
T ss_dssp CEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CC
T ss_pred EEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcce
Confidence 45777776543 4567888889999999999997753 222 356667763 3556541
Q ss_pred --cccccccccCCCEEEEeee
Q 005384 72 --QLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 72 --kTLSdYGIqdGSTLhLVlR 90 (699)
.||+.|+|.+|++|-|+-+
T Consensus 90 rLNTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 90 RVNTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp CCCBHHHHTCCTTCEEEEEEC
T ss_pred EecchhhcCCCCCCEEEEEeC
Confidence 4789999999999988754
No 135
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=94.69 E-value=0.0022 Score=56.69 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=32.0
Q ss_pred CccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 108 ~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
+.+.+.|.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~ 62 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY 62 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 456789999999999999999 99999999999974
No 136
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.60 E-value=0.0015 Score=58.10 Aligned_cols=36 Identities=6% Similarity=-0.035 Sum_probs=33.0
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIV 140 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLI 140 (699)
.+|+.+.+.|++++||+.||.+|+ ++||||++|+|+
T Consensus 16 ~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi 52 (100)
T 2dzm_A 16 YRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLK 52 (100)
T ss_dssp CSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEE
T ss_pred eCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEE
Confidence 457788899999999999999999 999999999985
No 137
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=94.54 E-value=0.0013 Score=54.85 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=34.3
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..++.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 20 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 58 (88)
T 3dbh_I 20 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 58 (88)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 457788899999999999999999 89999999999874
No 138
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=94.54 E-value=0.0063 Score=57.80 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|+.+.+.|.+++||.+||..|+ .+|||+++|||+|.
T Consensus 8 l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (152)
T 3u5c_f 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (152)
T ss_dssp ---------------------------------------
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 457788899999999999999999 89999999999986
No 139
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=94.53 E-value=0.067 Score=56.18 Aligned_cols=108 Identities=15% Similarity=0.089 Sum_probs=77.2
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC----CCCCCeEEEe------CCeecCCccccccccccCCCEEEE
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG----VLSEQQRLIC------RGKVLKDDQLLSAYHVEDGHTLHM 87 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektG----IPpeqQRLIf------kGKvLkDdkTLSdYGIqdGSTLhL 87 (699)
.+.++|... +-+.++.+++++||.+...+|.++.. .++++--|.. +|+-|++.++|..|++++++.|+.
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeec
Confidence 466777765 67788999999999999999988875 3566767766 456788899999999999998888
Q ss_pred eeecCCCCCCCCCCCCCCCCCccccccccCCchhhcccccc-CCCC
Q 005384 88 VVRQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGV 132 (699)
Q Consensus 88 VlRlpggpass~~qI~v~tg~titl~V~psdTVe~VK~~Iq-~eGI 132 (699)
..+... ..+.-.+|......|+...++..+-..+. +-|+
T Consensus 82 ~~~~~~------~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L 121 (371)
T 3ivf_A 82 RKKQRP------LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGI 121 (371)
T ss_dssp EECEEE------EEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTC
T ss_pred cCceeE------EEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCC
Confidence 654321 11222556666777777776666555444 3343
No 140
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=94.36 E-value=0.0031 Score=54.78 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=34.7
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|+.+.+.|.++++|..||.+|+ ++|||+++|||+|+
T Consensus 29 ~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~ 67 (97)
T 1wyw_B 29 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 67 (97)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 456778899999999999999999 99999999999985
No 141
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=94.34 E-value=0.0014 Score=55.75 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=37.0
Q ss_pred CCCCC--CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 100 ~qI~v--~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
|.+++ .+|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 63 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 63 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC
Confidence 44444 567888899999999999999999 89999999999974
No 142
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.27 E-value=0.0024 Score=56.52 Aligned_cols=38 Identities=8% Similarity=-0.062 Sum_probs=34.6
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 9 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 47 (106)
T 3m62_B 9 FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYS 47 (106)
T ss_dssp TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 457788899999999999999999 99999999999975
No 143
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.26 E-value=0.14 Score=48.38 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=53.1
Q ss_pred CCcEEEEEEeCC------CcEEEEEecCCCCHHHHHHHHHHHhC--CC------CCCeEEEeC----Ce-ecCCc-----
Q 005384 16 ETTIEIKIKTLD------SQTYTLRVDKQVPVPALKEQIASVTG--VL------SEQQRLICR----GK-VLKDD----- 71 (699)
Q Consensus 16 ~~tMqItVKtl~------GKt~tLeVdpsdTV~dLKekIeektG--IP------peqQRLIfk----GK-vLkDd----- 71 (699)
-.+|.|+|-..+ ...+.+.|-..+||.++|+||.+..- +| +++.-|-++ |+ .|.|.
T Consensus 22 y~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~ 101 (138)
T 2r2o_A 22 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 101 (138)
T ss_dssp CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred eEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccc
Confidence 355777775542 24688999999999999999987633 32 244555542 33 35442
Q ss_pred --------cccccccccCCCEEEEeeecC
Q 005384 72 --------QLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 72 --------kTLSdYGIqdGSTLhLVlRlp 92 (699)
.||+.|+|.+|++|-|+.+..
T Consensus 102 ~~~~wkrLNTL~HY~V~Dga~l~l~~~~~ 130 (138)
T 2r2o_A 102 VQGLWRRLNTLQHYKVPDGATVALVPCLT 130 (138)
T ss_dssp EETTEEECCBHHHHTCCTTCEEEEEEC--
T ss_pred ccCCceeecchhccCCCCCCEEEEEECCC
Confidence 389999999999999987764
No 144
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=94.21 E-value=0.0013 Score=55.98 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=34.3
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 8 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 46 (88)
T 4fbj_B 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (88)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC
Confidence 457778899999999999999999 89999999999874
No 145
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=93.87 E-value=0.0029 Score=54.23 Aligned_cols=41 Identities=7% Similarity=-0.019 Sum_probs=34.9
Q ss_pred CCCCC-CCCCcccc-ccccCCchhhcccccc-CCCCCcchhHHH
Q 005384 100 THNLP-GTSRSHGS-HVAPSVVIETFNLPDR-GDGVPSEISQIV 140 (699)
Q Consensus 100 ~qI~v-~tg~titl-~V~psdTVe~VK~~Iq-~eGIPpdqQRLI 140 (699)
+.+++ ..++.+.+ .|.+++||..||.+|+ ..|||+++|||+
T Consensus 8 m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 8 LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp CCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred EEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEE
Confidence 44444 34677778 9999999999999999 999999999998
No 146
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.84 E-value=0.0021 Score=53.74 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=33.9
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..++.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 15 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 53 (87)
T 1wh3_A 15 PDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ 53 (87)
T ss_dssp TTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET
T ss_pred CCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC
Confidence 346777899999999999999999 89999999999874
No 147
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.69 E-value=0.0039 Score=56.98 Aligned_cols=39 Identities=5% Similarity=0.012 Sum_probs=33.6
Q ss_pred CCCCccccccccCCchhhcccccc-------CCCC--CcchhHHHHHh
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-------GDGV--PSEISQIVSAV 143 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-------~eGI--PpdqQRLIfav 143 (699)
.+|+++.+.|++++||++||.+|+ ++|+ |+++|||||+-
T Consensus 24 l~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~G 71 (116)
T 1wgh_A 24 VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQG 71 (116)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETT
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECC
Confidence 567889999999999999999998 3475 69999999863
No 148
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=93.54 E-value=0.0032 Score=55.69 Aligned_cols=38 Identities=8% Similarity=-0.045 Sum_probs=31.6
Q ss_pred CCCCcccc--ccccCCchhhccccc-c-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGS--HVAPSVVIETFNLPD-R-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl--~V~psdTVe~VK~~I-q-~eGIPpdqQRLIfa 142 (699)
..|+.+.+ .|.+++||..||.+| + .+|+|+++|||||+
T Consensus 27 l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~ 68 (98)
T 4a20_A 27 IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK 68 (98)
T ss_dssp CSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET
T ss_pred CCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC
Confidence 44565566 556999999999999 7 78999999999975
No 149
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=93.50 E-value=0.35 Score=48.39 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=58.4
Q ss_pred EEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEe-CC----eecCC-ccccccccccCCCEEEEee
Q 005384 19 IEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLIC-RG----KVLKD-DQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 19 MqItVKtl~GK--t~tLeVdpsdTV~dLKekIeektGIPpe-qQRLIf-kG----KvLkD-dkTLSdYGIqdGSTLhLVl 89 (699)
+.|++...... .+++.++..+||.+||+++++.++++.+ +.||-. .. ..|.| +++|.+++|.++..|.|-+
T Consensus 140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~ 219 (231)
T 3jyu_A 140 LELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEP 219 (231)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEE
T ss_pred ceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEE
Confidence 45555543322 2456789999999999999999999997 688863 32 35665 5899999999999999998
Q ss_pred ecCCC
Q 005384 90 RQPVP 94 (699)
Q Consensus 90 Rlpgg 94 (699)
+...+
T Consensus 220 r~~dg 224 (231)
T 3jyu_A 220 QNEDG 224 (231)
T ss_dssp CCTTS
T ss_pred ecCCC
Confidence 87654
No 150
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=93.44 E-value=0.0019 Score=55.71 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=36.6
Q ss_pred CCCCCCCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 100 THNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 100 ~qI~v~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
|++++.+++.+.+.|.+++||+.||.+|+ ..|+|+++|||+|.
T Consensus 20 m~I~Vk~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 20 MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA 63 (93)
T ss_dssp CEEEEESSSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET
T ss_pred EEEEEECCCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC
Confidence 44555446778899999999999999999 89999999999875
No 151
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=93.31 E-value=0.0085 Score=50.82 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=33.4
Q ss_pred CCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 106 tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
+|+.+.+.|.+++||+.||.+|+ ..|+|+++|||+|.
T Consensus 13 ~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 50 (88)
T 2hj8_A 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (88)
T ss_dssp TSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 46777889999999999999999 89999999999974
No 152
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.31 E-value=0.36 Score=47.82 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=57.8
Q ss_pred EEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEE--e-CC--eecCC-ccccccccccCCCEEEEee
Q 005384 19 IEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLI--C-RG--KVLKD-DQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 19 MqItVKtl~G--Kt~tLeVdpsdTV~dLKekIeektGIPpe-qQRLI--f-kG--KvLkD-dkTLSdYGIqdGSTLhLVl 89 (699)
+.|++..... ..+++.++..+||.+|++++++.++++.+ +.||- | .+ ..|+| +++|.+++|.++..|.|-+
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~ 207 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQ 207 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEE
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEE
Confidence 4455554332 23567889999999999999999999997 68875 3 23 35655 5799999999999999988
Q ss_pred ecCCC
Q 005384 90 RQPVP 94 (699)
Q Consensus 90 Rlpgg 94 (699)
|...+
T Consensus 208 r~~dg 212 (217)
T 4a3p_A 208 KNEDG 212 (217)
T ss_dssp CCCC-
T ss_pred ecCCC
Confidence 87654
No 153
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=93.24 E-value=0.0026 Score=52.33 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=34.2
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|+.+.+.|.++++|..||..++ ++|+|+++|||+|+
T Consensus 11 ~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~ 49 (79)
T 2uyz_B 11 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 49 (79)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC
Confidence 456778899999999999999999 89999999999875
No 154
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=93.04 E-value=0.0025 Score=52.25 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=33.1
Q ss_pred CCCCcc-ccc-cccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSH-GSH-VAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~ti-tl~-V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|+.+ .+. |.+++||+.||.+|+ ..|+|+++|||+|.
T Consensus 10 ~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~ 50 (78)
T 2faz_A 10 MDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR 50 (78)
T ss_dssp TTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 346664 788 999999999999999 89999999999874
No 155
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=92.97 E-value=0.013 Score=54.22 Aligned_cols=38 Identities=5% Similarity=0.022 Sum_probs=33.4
Q ss_pred CCCCccccccccCCchhhcccccc-------CCCCC--cchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-------GDGVP--SEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-------~eGIP--pdqQRLIfa 142 (699)
.+|+++.+.|++++||++||.+|+ ++|+| +++|||||+
T Consensus 25 l~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~ 71 (125)
T 2gow_A 25 VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ 71 (125)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS
T ss_pred CCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC
Confidence 557889999999999999999998 46884 899999986
No 156
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=92.91 E-value=0.0035 Score=56.55 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=31.8
Q ss_pred CccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 108 ~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..+++.|.+++||..||.+|+ ++|||+++|||+|.
T Consensus 37 ~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~g 72 (105)
T 4dbg_A 37 VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIG 72 (105)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred ceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEecc
Confidence 567889999999999999999 99999999998754
No 157
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.91 E-value=0.0031 Score=55.03 Aligned_cols=35 Identities=11% Similarity=0.081 Sum_probs=31.9
Q ss_pred CCcc-ccccccCCchhhcccccc-CCCCCcchhHHHH
Q 005384 107 SRSH-GSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (699)
Q Consensus 107 g~ti-tl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIf 141 (699)
++.+ .+.|.+++||..||.+|+ ..|||+++|||+|
T Consensus 16 g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~ 52 (96)
T 1wgg_A 16 KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMV 52 (96)
T ss_dssp TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEE
T ss_pred CEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 4667 489999999999999999 9999999999996
No 158
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.91 E-value=0.0057 Score=52.29 Aligned_cols=34 Identities=3% Similarity=-0.161 Sum_probs=29.1
Q ss_pred ccccccccCCchhhcccccc-CC--CCCcchhHHHHH
Q 005384 109 SHGSHVAPSVVIETFNLPDR-GD--GVPSEISQIVSA 142 (699)
Q Consensus 109 titl~V~psdTVe~VK~~Iq-~e--GIPpdqQRLIfa 142 (699)
.+.+.|.+++||..||.+|+ .. |+|+++|||||.
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~ 57 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS 57 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC
Confidence 34556669999999999999 66 999999999975
No 159
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.84 E-value=0.0043 Score=52.14 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=33.2
Q ss_pred CCC-Ccccc-ccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTS-RSHGS-HVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg-~titl-~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+| +.+.+ .|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 15 ~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 55 (89)
T 1wy8_A 15 IDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR 55 (89)
T ss_dssp TTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET
T ss_pred CCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 346 57788 5999999999999999 89999999999874
No 160
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=92.72 E-value=0.0035 Score=54.30 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=34.4
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 30 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 68 (98)
T 4hcn_B 30 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 68 (98)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 457788899999999999999999 89999999999974
No 161
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=92.70 E-value=0.0033 Score=53.44 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=36.9
Q ss_pred CCCCC--CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 100 ~qI~v--~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
|++++ .+|+.+.+.|.+++||+.||.+|+ ..|+|++.|||+|.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 55 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA 55 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEEC
Confidence 44444 567888899999999999999999 89999999999974
No 162
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=92.68 E-value=0.0072 Score=49.77 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.1
Q ss_pred CCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 106 tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.++.+.+.|.+++||..||..|+ ..|+|++.|||+|.
T Consensus 12 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~ 49 (85)
T 3mtn_B 12 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence 46677889999999999999999 89999999999974
No 163
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=92.53 E-value=0.0097 Score=55.33 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=32.9
Q ss_pred CCCCcc-ccccccCCchhhccccc-----c-CCCCCc--chhHHHHH
Q 005384 105 GTSRSH-GSHVAPSVVIETFNLPD-----R-GDGVPS--EISQIVSA 142 (699)
Q Consensus 105 ~tg~ti-tl~V~psdTVe~VK~~I-----q-~eGIPp--dqQRLIfa 142 (699)
.+|+.+ .+.+++++||++||.+| + ++|+|+ ++|||||+
T Consensus 24 ~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~ 70 (126)
T 1se9_A 24 TDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA 70 (126)
T ss_dssp TTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET
T ss_pred CCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC
Confidence 456666 58999999999999999 6 899997 89999986
No 164
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=92.45 E-value=0.006 Score=53.96 Aligned_cols=34 Identities=6% Similarity=-0.040 Sum_probs=28.9
Q ss_pred ccccccccCCchhhcccccc-C-CCCCc-chhHHHHH
Q 005384 109 SHGSHVAPSVVIETFNLPDR-G-DGVPS-EISQIVSA 142 (699)
Q Consensus 109 titl~V~psdTVe~VK~~Iq-~-eGIPp-dqQRLIfa 142 (699)
.+.+.|.+++||..||.+|+ + +|+|+ ++|||||+
T Consensus 37 ~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~ 73 (99)
T 2kdb_A 37 DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS 73 (99)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC
Confidence 45778899999999999999 3 67775 99999985
No 165
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=92.43 E-value=0.0043 Score=53.82 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=31.4
Q ss_pred ccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 109 titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+.+.|.+++||+.||.+|+ .+|+|+++|||+|.
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 60 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 57789999999999999999 89999999999874
No 166
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.35 E-value=0.0049 Score=54.33 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=34.3
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 31 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 69 (106)
T 1ttn_A 31 STGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS 69 (106)
T ss_dssp TTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC
Confidence 357778899999999999999999 99999999999974
No 167
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=92.19 E-value=0.0062 Score=50.29 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=33.3
Q ss_pred CCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 106 tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.++.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 12 ~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~ 49 (85)
T 3n3k_B 12 MGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp GGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 46677889999999999999999 89999999999984
No 168
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.13 E-value=0.0059 Score=49.95 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=33.1
Q ss_pred CCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 106 tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.|+.+.+.|.+++||+.||.+|+ ..|+|++.|||+|.
T Consensus 16 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 53 (81)
T 2dzi_A 16 QGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK 53 (81)
T ss_dssp TSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 46667789999999999999999 89999999999874
No 169
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=92.11 E-value=0.0042 Score=52.88 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.0
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 9 ~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 47 (96)
T 3k9o_B 9 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 47 (96)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEEC
Confidence 456777889999999999999999 89999999999974
No 170
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.08 E-value=0.0054 Score=52.83 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=33.4
Q ss_pred CCCCccccccccCCchhhcccccc-C---CCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-G---DGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~---eGIPpdqQRLIfa 142 (699)
.+|+.+.+.|.+++||..||.+|+ . +|+|+++|||+|.
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~ 49 (95)
T 1uel_A 8 LQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA 49 (95)
T ss_dssp TTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC
Confidence 346777889999999999999999 5 8999999999874
No 171
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.90 E-value=0.0057 Score=53.08 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=32.5
Q ss_pred CCCccccccccCCchhhcccccc-CCCCCcchhHHHH
Q 005384 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (699)
Q Consensus 106 tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIf 141 (699)
.++.+.+.|.+++||..||.+|+ ..|||+++|||+|
T Consensus 25 ~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~ 61 (95)
T 1v86_A 25 NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY 61 (95)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 35667789999999999999999 9999999999995
No 172
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.90 E-value=0.0096 Score=52.09 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=32.8
Q ss_pred CCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 107 g~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
++.+.++|.+++||++||.+|+ ..|||+++|||+|.
T Consensus 21 ~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (102)
T 1v5o_A 21 EVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYM 57 (102)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC
Confidence 4677789999999999999999 99999999999874
No 173
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=91.86 E-value=0.0055 Score=50.83 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=33.4
Q ss_pred CCCCccccccccCCchhhcccccc-C---CCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-G---DGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~---eGIPpdqQRLIfa 142 (699)
.+|+.+.+.|.+++||..||.+|+ . +|+|+++|||+|.
T Consensus 13 ~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~ 54 (85)
T 2wyq_A 13 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 54 (85)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC
Confidence 346777889999999999999999 4 8999999999874
No 174
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=91.70 E-value=0.0046 Score=49.65 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=33.6
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..|+.+.+.|.+++||..+|.+|+ ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 1ndd_A 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 346677889999999999999999 89999999999874
No 175
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=91.53 E-value=0.0063 Score=58.30 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=34.8
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|+.+.+.|.+++||..||.+|+ ++|+|+++|||+|+
T Consensus 8 ~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (169)
T 3l0w_B 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (169)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 457788899999999999999999 89999999999975
No 176
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=91.34 E-value=0.76 Score=40.00 Aligned_cols=50 Identities=14% Similarity=0.266 Sum_probs=44.0
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 005384 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGK 66 (699)
+...|+|+|... .++.|+|.+..+..+|.++|.++.+++++...|.|+..
T Consensus 2 ~~~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 2 SHMAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp CSSCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CCCcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 345588888885 68999999999999999999999999999999999863
No 177
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.17 E-value=0.012 Score=50.73 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=31.1
Q ss_pred ccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 109 titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+.+.|.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 46678999999999999999 99999999999984
No 178
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=91.09 E-value=0.0029 Score=56.18 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.1
Q ss_pred CCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 106 tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.++.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 44 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 81 (111)
T 2ojr_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC
Confidence 46677789999999999999999 89999999999874
No 179
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=91.05 E-value=0.85 Score=42.62 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=51.3
Q ss_pred cEEEEEEeC--CCcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC-C---e-ecCC---------c--
Q 005384 18 TIEIKIKTL--DSQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR-G---K-VLKD---------D-- 71 (699)
Q Consensus 18 tMqItVKtl--~GKt~tLeVdpsdTV~dLKekIeekt--GIP------peqQRLIfk-G---K-vLkD---------d-- 71 (699)
++.|+|-.. ++..+.+.|-..+||.++|+||.+.. ++| +++..|-+. | + .|.| .
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 345554332 34567888889999999999997753 222 356777763 3 3 3543 1
Q ss_pred --cccccccccCCCEEEEeeec
Q 005384 72 --QLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 72 --kTLSdYGIqdGSTLhLVlRl 91 (699)
.||..|+|.+|++|-|+.+.
T Consensus 84 rLNTL~HY~V~dgatv~l~~~~ 105 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMSLID 105 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEEECC
T ss_pred EeccccccCCCCCCEEEEEEcc
Confidence 47899999999999998664
No 180
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=90.67 E-value=0.0085 Score=58.93 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.8
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|+++.+.|.+++||..||.+|+ .+|||+++|||+|.
T Consensus 113 l~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~ 151 (189)
T 3q3f_A 113 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 151 (189)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC
Confidence 457888899999999999999999 89999999999974
No 181
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=90.24 E-value=0.014 Score=52.13 Aligned_cols=57 Identities=7% Similarity=0.080 Sum_probs=43.6
Q ss_pred CEEEEeeecCCCCCCCCCCCCCCCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 83 HTLHMVVRQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 83 STLhLVlRlpggpass~~qI~v~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..|.|.++.+..... ...-.+|+.+.+.|.+++||..||.+|+ ..|||+++|||+|.
T Consensus 24 ~~i~l~V~~p~~~~~---~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~ 81 (115)
T 1we7_A 24 GPVSIKVQVPNMQDK---TEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE 81 (115)
T ss_dssp SCEEEEEEECCCSSS---CSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEET
T ss_pred CCEEEEEEcCCCccc---cccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEC
Confidence 467777776542110 0111568888899999999999999999 89999999999984
No 182
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=90.23 E-value=0.011 Score=50.85 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.2
Q ss_pred CCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 106 tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
+|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 9 ~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~ 46 (98)
T 1yx5_B 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (98)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 46667789999999999999999 89999999999974
No 183
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=90.20 E-value=1.8 Score=37.41 Aligned_cols=68 Identities=13% Similarity=0.229 Sum_probs=49.4
Q ss_pred CcEEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-C----------CCCCeEEEeCCeecCCcccccccc
Q 005384 17 TTIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-V----------LSEQQRLICRGKVLKDDQLLSAYH 78 (699)
Q Consensus 17 ~tMqItVKtl~------G-Kt~tLeVdpsdTV~dLKekIeektG-I----------PpeqQRLIfkGKvLkDdkTLSdYG 78 (699)
..|+|+||... | +...+++....||.+|++.+..++. + ......+..+|+.... ++-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 46999999883 3 4667888778999999999987642 0 1234566777776652 677
Q ss_pred ccCCCEEEEee
Q 005384 79 VEDGHTLHMVV 89 (699)
Q Consensus 79 IqdGSTLhLVl 89 (699)
|++|+.|.++-
T Consensus 83 L~dGDeV~i~p 93 (98)
T 1vjk_A 83 LKDGDVVGVFP 93 (98)
T ss_dssp CCTTCEEEEES
T ss_pred CCCCCEEEEEC
Confidence 89999998874
No 184
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=89.94 E-value=0.02 Score=50.14 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=32.0
Q ss_pred CCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 107 g~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
++.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 70 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA 70 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 4456789999999999999999 89999999999874
No 185
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=89.82 E-value=2.5 Score=34.59 Aligned_cols=64 Identities=11% Similarity=0.179 Sum_probs=48.3
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
.|+|+|.-. .....+++....||.+|.+++ +++++...+..+|+.+..+. -|++|+.|.++--.
T Consensus 4 ~m~i~vNg~-~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V 67 (70)
T 1ryj_A 4 GMKFTVITD-DGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVI 67 (70)
T ss_dssp CEEEEEEET-TEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECT
T ss_pred eEEEEEeCc-cCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEecc
Confidence 388888764 334567788889999999876 56677777889999886554 68899999887543
No 186
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=89.82 E-value=0.0089 Score=53.25 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.1
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
..|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 43 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 81 (111)
T 3vdz_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC
Confidence 456778899999999999999999 89999999999974
No 187
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=89.81 E-value=0.68 Score=42.68 Aligned_cols=75 Identities=27% Similarity=0.429 Sum_probs=51.8
Q ss_pred CcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC-C---e-ecCC---------c
Q 005384 17 TTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR-G---K-VLKD---------D 71 (699)
Q Consensus 17 ~tMqItVKtl~---GKt~tLeVdpsdTV~dLKekIeekt--GIP------peqQRLIfk-G---K-vLkD---------d 71 (699)
.+|.|+|-..+ ...+.+.|-..+||.++|+||.+.. ++| +++..|-+. | + .|.| .
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~ 91 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEND 91 (117)
T ss_dssp CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---
T ss_pred EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCc
Confidence 45677765543 3447788889999999999997653 222 345666652 3 2 3433 1
Q ss_pred ----cccccccccCCCEEEEeeec
Q 005384 72 ----QLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 72 ----kTLSdYGIqdGSTLhLVlRl 91 (699)
.||+.|+|.+|++|-|+.+.
T Consensus 92 wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 92 WKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred ceEeccccccCCCCCCEEEEEeCC
Confidence 47899999999999998765
No 188
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=89.71 E-value=0.017 Score=49.41 Aligned_cols=36 Identities=8% Similarity=-0.000 Sum_probs=32.7
Q ss_pred CCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 107 g~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
++.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 62 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFT 62 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 5667789999999999999999 89999999999874
No 189
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=89.38 E-value=0.026 Score=49.98 Aligned_cols=53 Identities=9% Similarity=0.078 Sum_probs=41.0
Q ss_pred cCCCEEEEeeecCCCCCCCCCCCCCCCCCcccccccc-CCchhhcccccc-CCCCCcchhHHHHH
Q 005384 80 EDGHTLHMVVRQPVPSSSDGTHNLPGTSRSHGSHVAP-SVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 80 qdGSTLhLVlRlpggpass~~qI~v~tg~titl~V~p-sdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+...+.|.++.+.. .+++.+.+.|.+ ++||..||.+|+ ..|||+++|||+|.
T Consensus 23 ~~~~~i~i~Vk~~~~----------~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~ 77 (111)
T 1we6_A 23 QHPGPATIRVSKPNE----------NDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK 77 (111)
T ss_dssp HCCSCEEEEECCTTC----------SSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS
T ss_pred hCCCcEEEEEEeccc----------CCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 334456676665421 146677889998 999999999999 89999999999973
No 190
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.21 E-value=0.03 Score=48.21 Aligned_cols=32 Identities=9% Similarity=-0.123 Sum_probs=28.8
Q ss_pred cc-ccccCCchhhcccccc--CCCCCcchhHHHHH
Q 005384 111 GS-HVAPSVVIETFNLPDR--GDGVPSEISQIVSA 142 (699)
Q Consensus 111 tl-~V~psdTVe~VK~~Iq--~eGIPpdqQRLIfa 142 (699)
.+ +|.+++||..||.+|+ ++|+|+++|||+|.
T Consensus 26 ~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~ 60 (88)
T 2dzj_A 26 FLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLD 60 (88)
T ss_dssp EEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESS
T ss_pred EEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEec
Confidence 36 8999999999999999 48999999999875
No 191
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=89.18 E-value=0.74 Score=38.66 Aligned_cols=63 Identities=11% Similarity=0.237 Sum_probs=47.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
|+|+||....+...+++....||.+|-+ +.+++++.--+..+|+.+..+. +.+|++|.++--.
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V 63 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLI 63 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEee
Confidence 7888888755556689999999998765 5889998887888899886555 2358888876433
No 192
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=89.10 E-value=0.014 Score=49.59 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=32.8
Q ss_pred CCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 106 tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.++.+.+.|.+++||+.||.+|+ ..|+|+++|||+|.
T Consensus 20 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (85)
T 2kd0_A 20 GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK 57 (85)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEET
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 45667789999999999999999 89999999999864
No 193
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=89.00 E-value=0.012 Score=47.27 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=32.8
Q ss_pred CCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 106 tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.++.+.+.|.+++||..+|..|+ ..|+|++.|+|+|.
T Consensus 9 ~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 3a9j_A 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 45667789999999999999999 89999999999874
No 194
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.65 E-value=0.021 Score=48.56 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=30.9
Q ss_pred CCccccccccC-----Cchhhcccccc-CCCCCcchhHHHHH
Q 005384 107 SRSHGSHVAPS-----VVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 107 g~titl~V~ps-----dTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
++.+.+.|.++ .||..||.+|+ ..|+|+++|||+|.
T Consensus 16 ~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 16 NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 45566788885 99999999999 89999999999964
No 195
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.61 E-value=0.03 Score=51.18 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=32.7
Q ss_pred CCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 107 g~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
++.+.+.|.+++||..||.+|+ ..|||+++|||+|.
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence 5667789999999999999999 89999999999975
No 196
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=88.45 E-value=0.022 Score=51.08 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=34.7
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 17 l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 55 (114)
T 2kdi_A 17 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA 55 (114)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 567788899999999999999999 89999999999874
No 197
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=88.44 E-value=0.04 Score=49.91 Aligned_cols=34 Identities=6% Similarity=-0.014 Sum_probs=30.9
Q ss_pred ccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 109 titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+...+.+++||+.||.+|+ .+|||+++|||+|.
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 45678999999999999999 99999999999973
No 198
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=88.40 E-value=0.015 Score=47.01 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=32.0
Q ss_pred CCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 107 g~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
++.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 13 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 49 (77)
T 2bwf_A 13 QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 49 (77)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 4566788999999999999999 89999999999864
No 199
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=88.25 E-value=0.0075 Score=54.22 Aligned_cols=33 Identities=6% Similarity=-0.112 Sum_probs=29.1
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchh
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEIS 137 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQ 137 (699)
.+|+.+.+.|.+++||++||.+|+ ++|+|++.|
T Consensus 15 l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q 48 (105)
T 1v2y_A 15 MDGEVMPVVVVQNATVLDLKKAIQRYVQLKQERE 48 (105)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEECCCChHHHHHHHHHHHhCCCcccc
Confidence 678889999999999999999999 888888543
No 200
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=87.51 E-value=2.5 Score=37.13 Aligned_cols=52 Identities=8% Similarity=0.107 Sum_probs=43.2
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeCCe
Q 005384 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICRGK 66 (699)
Q Consensus 14 ~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeq-QRLIfkGK 66 (699)
++...|+|++.. +|..+.+.|+++.+..+|.++|.+.+++..++ ..|.|...
T Consensus 2 ~~~~~vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 2 PLGSQVRVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp CCSSCEEEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred CCCCeEEEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 344568888877 57899999999999999999999999988654 67888764
No 201
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.30 E-value=0.044 Score=48.02 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=30.4
Q ss_pred cccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 110 itl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
+.+.|.+++||..||.+|+ ..||++++|||+|.
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 62 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 5689999999999999999 89999999999875
No 202
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=87.21 E-value=0.047 Score=47.76 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=30.4
Q ss_pred cccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 110 itl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 34 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 67 (100)
T 1yqb_A 34 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 67 (100)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 5689999999999999999 89999999999874
No 203
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=87.12 E-value=2.7 Score=39.23 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=49.6
Q ss_pred CCcEEEEEEe---CC------CcEEEEEecCCCCHHHHHHHHHHH----hCCCC----CCeEEEeC-C---eecC-----
Q 005384 16 ETTIEIKIKT---LD------SQTYTLRVDKQVPVPALKEQIASV----TGVLS----EQQRLICR-G---KVLK----- 69 (699)
Q Consensus 16 ~~tMqItVKt---l~------GKt~tLeVdpsdTV~dLKekIeek----tGIPp----eqQRLIfk-G---KvLk----- 69 (699)
-.++.|+|-. .. ...+.+.|-..+||.++|+||.+. .++|- ++..|-+. | +.|.
T Consensus 17 y~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~t 96 (126)
T 3kuz_A 17 QGTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSS 96 (126)
T ss_dssp CCEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTT
T ss_pred eEEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCc
Confidence 3456777766 32 246888999999999999999653 35543 34455442 2 2222
Q ss_pred -----Cc----cccccccccCCCEEEEee
Q 005384 70 -----DD----QLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 70 -----Dd----kTLSdYGIqdGSTLhLVl 89 (699)
+. .||+.|+|.+|++|-|+.
T Consensus 97 S~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 97 SVILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CCBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred ceEecCCeeEeccccccCCCCCCEEEEee
Confidence 22 367889999999998874
No 204
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=86.89 E-value=0.034 Score=49.20 Aligned_cols=36 Identities=8% Similarity=0.129 Sum_probs=30.6
Q ss_pred CCCccccccc-cCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 106 TSRSHGSHVA-PSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 106 tg~titl~V~-psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
+|+. .++|. +++||..||.+|+ +.|||+++|||++.
T Consensus 16 ~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~ 53 (107)
T 1wf9_A 16 DGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTN 53 (107)
T ss_dssp SCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSS
T ss_pred CCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEEC
Confidence 3443 57899 9999999999999 89999999999754
No 205
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=86.07 E-value=0.028 Score=49.96 Aligned_cols=39 Identities=8% Similarity=-0.036 Sum_probs=34.4
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHHh
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfav 143 (699)
...+.+.+.+.+.++|..||..|+ ++|||+++|+|+|.-
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg 60 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEG 60 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 345667789999999999999999 999999999999865
No 206
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=85.53 E-value=1.8 Score=37.68 Aligned_cols=70 Identities=6% Similarity=0.035 Sum_probs=44.8
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeee
Q 005384 12 AESSETTIEIKIKTLDSQTYTLRVDKQ-VPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 12 se~s~~tMqItVKtl~GKt~tLeVdps-dTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
+.-...+|+|+| +|+.+. +... .||.+|.+++ +++++...+..+|+.+..+ ...++.|++||.|.++--
T Consensus 14 ~~~~~~~M~I~v---NGe~~e--l~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 14 SGHIGGRHMLQL---NGKDVK--WKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp --------CEEE---TTEEEC--CSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEE
T ss_pred CCCCCcceEEEE---CCEEEE--CCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcc
Confidence 334556677766 677554 5665 8999998876 5666777788888887433 344567999999998864
Q ss_pred c
Q 005384 91 Q 91 (699)
Q Consensus 91 l 91 (699)
.
T Consensus 84 V 84 (87)
T 1tyg_B 84 V 84 (87)
T ss_dssp C
T ss_pred c
Confidence 4
No 207
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=84.79 E-value=1.8 Score=39.22 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=50.0
Q ss_pred CcEEEEEEeCC------C--cEEEEEecC---CCCHHHHHHHHHHHhCCCCCCeEEEeC-Ce------ecCCcc---cc-
Q 005384 17 TTIEIKIKTLD------S--QTYTLRVDK---QVPVPALKEQIASVTGVLSEQQRLICR-GK------VLKDDQ---LL- 74 (699)
Q Consensus 17 ~tMqItVKtl~------G--Kt~tLeVdp---sdTV~dLKekIeektGIPpeqQRLIfk-GK------vLkDdk---TL- 74 (699)
.+|+|+|+... | +.+.+++.. ..||.+|.+.|.+++ +..+.+|+.. |+ +|-+++ .|
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccC
Confidence 55999999874 2 366788873 369999999998876 2223334322 32 222222 22
Q ss_pred -ccccccCCCEEEEeeecCCC
Q 005384 75 -SAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 75 -SdYGIqdGSTLhLVlRlpgg 94 (699)
.+|.|++|+.|.++-...++
T Consensus 88 gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCC
Confidence 46889999999998776665
No 208
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=84.46 E-value=2.6 Score=34.55 Aligned_cols=68 Identities=7% Similarity=0.205 Sum_probs=45.0
Q ss_pred EEEEEEeCCC-cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 19 IEIKIKTLDS-QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 19 MqItVKtl~G-Kt~tLeVdpsdTV~dLKekIeektGIPp--eqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
|.|+||.... +...+++ ...||.+|++.+..+.++.. ....+..+|+.+.+ .++-|++|+.|.++-..
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~Ppv 71 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPV 71 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCB
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCC
Confidence 5677777642 1133666 56899999999987543322 44566677776433 35678999999987543
No 209
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=84.04 E-value=6.9 Score=32.79 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=41.8
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCC-----CC------CCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 29 QTYTLRVDKQVPVPALKEQIASVTGV-----LS------EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIeektGI-----Pp------eqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
+...+++....||.+|++.+..++.- -. ...++..+|+.... ++-|++|+.|.++-..
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv 86 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPV 86 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCC
Confidence 56778887789999999999887531 00 12566677777654 5678999999987543
No 210
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=83.36 E-value=0.059 Score=46.02 Aligned_cols=36 Identities=6% Similarity=-0.045 Sum_probs=29.8
Q ss_pred CCCCccccccccCCchhhccccccCCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDRGDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq~eGIPpdqQRLIfa 142 (699)
..++.+.+.|.++++|..||.+|+..- +++|||+|.
T Consensus 15 ~~g~~~~~~v~~~~TV~~LK~~i~~~~--~~~qrLi~~ 50 (95)
T 1wia_A 15 LNDTEELAVARPEDTVGTLKSKYFPGQ--ESQMKLIYQ 50 (95)
T ss_dssp TTTEEEEEEECSSSBHHHHHHHHSSST--TTTCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHhhC--cCcEEEEEC
Confidence 346677889999999999999999333 899999974
No 211
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=83.29 E-value=0.066 Score=56.32 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=37.5
Q ss_pred CCCCCC--CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 99 ~~qI~v--~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+++++ .+++.+.+.|.+++||..||.+|+ ..|||+++|||+|.
T Consensus 233 ~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~ 279 (307)
T 3ai5_A 233 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279 (307)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC
Confidence 344444 457888899999999999999999 89999999999975
No 212
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=82.62 E-value=0.079 Score=46.69 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=25.5
Q ss_pred cccC-Cchhhcccccc-CC--CCCcch-hHHHHH
Q 005384 114 VAPS-VVIETFNLPDR-GD--GVPSEI-SQIVSA 142 (699)
Q Consensus 114 V~ps-dTVe~VK~~Iq-~e--GIPpdq-QRLIfa 142 (699)
|+++ +||..||.+|+ .. |+|+++ |||+|.
T Consensus 40 v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~ 73 (107)
T 1x1m_A 40 YSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC 73 (107)
T ss_dssp SCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET
T ss_pred cCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC
Confidence 5565 99999999999 77 999999 999864
No 213
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=82.41 E-value=3.2 Score=47.51 Aligned_cols=78 Identities=22% Similarity=0.271 Sum_probs=52.0
Q ss_pred CCcEEEEEEeCCC------cEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC----Ce-ecCCc-----
Q 005384 16 ETTIEIKIKTLDS------QTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR----GK-VLKDD----- 71 (699)
Q Consensus 16 ~~tMqItVKtl~G------Kt~tLeVdpsdTV~dLKekIeekt--GIP------peqQRLIfk----GK-vLkDd----- 71 (699)
-.+|.|+|-..+| ..+.+.|-.+|||.++|+||.+.. ++| +++..|-+. |+ .|.|.
T Consensus 255 ~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~ 334 (644)
T 3hm6_X 255 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 334 (644)
T ss_dssp CCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred ceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccce
Confidence 4557777765432 447788999999999999997642 222 245556552 33 35442
Q ss_pred --------cccccccccCCCEEEEeeecCC
Q 005384 72 --------QLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 72 --------kTLSdYGIqdGSTLhLVlRlpg 93 (699)
.||++|+|.||++|-|+.+...
T Consensus 335 ~~~~wkrLNTL~HY~V~dga~v~L~p~~~~ 364 (644)
T 3hm6_X 335 VQGLWRRLNTLQHYKVPDGATVALVPCLTK 364 (644)
T ss_dssp EETTEEECCBTTTTTCCTTCEEEEEEC---
T ss_pred ecCcceeecchhhcCCCCCcEEEEEecccc
Confidence 4799999999999999877643
No 214
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=82.21 E-value=5.4 Score=35.71 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=59.0
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEE------eCCeecCCcccc----ccccccC
Q 005384 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLI------CRGKVLKDDQLL----SAYHVED 81 (699)
Q Consensus 13 e~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQ-RLI------fkGKvLkDdkTL----SdYGIqd 81 (699)
+.+..++-|+|-..||....|.|+..+|+.++-+++.+|.++..+.- -|+ +--+.|+|+..| +.+.+..
T Consensus 4 ~~~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s 83 (100)
T 1wgr_A 4 GSSGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGG 83 (100)
T ss_dssp CCCCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSS
T ss_pred cccCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCC
Confidence 44556678888889999999999999999999999999998765443 232 123678888654 4555666
Q ss_pred CCEEEEeeecC
Q 005384 82 GHTLHMVVRQP 92 (699)
Q Consensus 82 GSTLhLVlRlp 92 (699)
...|.+..+..
T Consensus 84 ~nr~~F~kr~~ 94 (100)
T 1wgr_A 84 DSRFVFRKNFA 94 (100)
T ss_dssp CCEEEECSCCS
T ss_pred CcEEEEecchh
Confidence 77777765543
No 215
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=80.99 E-value=5.7 Score=39.93 Aligned_cols=73 Identities=21% Similarity=0.272 Sum_probs=53.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEe---CCe--ecCCccccccccccCCCEEEEeeec
Q 005384 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLIC---RGK--VLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 18 tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeq-QRLIf---kGK--vLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
+|.|.|..+|| ++.+.|++.+|+.+|-++|+++.++...+ .=|.| +|. .|+.++.|.+.+++.+..+.|..|.
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 47899999998 68899999999999999999999987643 34444 232 4667777777765555544444443
No 216
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=80.89 E-value=5.7 Score=40.45 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=55.7
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEe--CCe--ecCCccccccccccCCCEEEEeee
Q 005384 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLIC--RGK--VLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeq-QRLIf--kGK--vLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
...|.+.|..+|| ++.+.|++++|+.+|-+.|+++.++...+ .-|.| +|. .|+.++.|.+..++.+..+.|..|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 5668999999999 78899999999999999999999987532 34544 342 477778888876655554444444
Q ss_pred c
Q 005384 91 Q 91 (699)
Q Consensus 91 l 91 (699)
.
T Consensus 99 ~ 99 (314)
T 1h4r_A 99 A 99 (314)
T ss_dssp E
T ss_pred E
Confidence 3
No 217
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=80.19 E-value=0.11 Score=55.84 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=33.7
Q ss_pred CCCCccccccccCCchhhccccccC----CCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDRG----DGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq~----eGIPpdqQRLIfa 142 (699)
..|+.+.+.|.+++||..||.+|+. +|||+++|||||.
T Consensus 15 l~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~ 56 (368)
T 1oqy_A 15 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 56 (368)
T ss_dssp TTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESS
T ss_pred CCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEEC
Confidence 4577888999999999999999983 6899999999986
No 218
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=77.82 E-value=10 Score=34.21 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=56.2
Q ss_pred EEEEEEeCCC---cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCCe---ecCCccccccccccCCCEEEEeee
Q 005384 19 IEIKIKTLDS---QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGK---VLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 19 MqItVKtl~G---Kt~tLeVdpsdTV~dLKekIeektGIPp--eqQRLIfkGK---vLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
+.|+|..++. ..++++|..+.-|..|.-+|-++..++. .+--|-.--| +|+-..+|..|||+.++.|++.-.
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 6777777554 5688999999999999999998887665 3444544433 678889999999999999988643
No 219
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=77.74 E-value=8.1 Score=40.40 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=53.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCC---------eecCCccccccccccCCCEEE
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRG---------KVLKDDQLLSAYHVEDGHTLH 86 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPp-eqQRLIfkG---------KvLkDdkTLSdYGIqdGSTLh 86 (699)
..+.+.|..++|....+.|+...|+.+|-+.|+++.++.. +..-|.+.. +-|+.+++|.+.++....+++
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 4478889999999999999999999999999999999765 334555432 234455666665555555555
Q ss_pred Eeee
Q 005384 87 MVVR 90 (699)
Q Consensus 87 LVlR 90 (699)
+.++
T Consensus 164 frvK 167 (371)
T 3ivf_A 164 LRRK 167 (371)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 5443
No 220
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=77.50 E-value=4.7 Score=41.20 Aligned_cols=79 Identities=16% Similarity=0.118 Sum_probs=53.3
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeC---C--eecCCccccccccccCCCEE
Q 005384 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICR---G--KVLKDDQLLSAYHVEDGHTL 85 (699)
Q Consensus 12 se~s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeq-QRLIfk---G--KvLkDdkTLSdYGIqdGSTL 85 (699)
.++....|.+.|..+||....+.|++..|+.+|-+.|+++.++...+ .=|.|. | ..|+.++.|.+.......++
T Consensus 11 ~~~~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l 90 (296)
T 3qij_A 11 RENLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNF 90 (296)
T ss_dssp ------CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEE
T ss_pred CCCCCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEE
Confidence 45666779999999999999999999999999999999999987533 345443 2 24666777776643333455
Q ss_pred EEeee
Q 005384 86 HMVVR 90 (699)
Q Consensus 86 hLVlR 90 (699)
++.++
T Consensus 91 ~frvk 95 (296)
T 3qij_A 91 TFNVK 95 (296)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 54443
No 221
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=77.48 E-value=0.1 Score=44.13 Aligned_cols=36 Identities=6% Similarity=0.028 Sum_probs=29.6
Q ss_pred CCCCccccc-cccCCchhhcccccc-CCCCCcchhHHHH
Q 005384 105 GTSRSHGSH-VAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (699)
Q Consensus 105 ~tg~titl~-V~psdTVe~VK~~Iq-~eGIPpdqQRLIf 141 (699)
.+|+.. +. +.+++||..||..|+ +.|||+++|||+|
T Consensus 8 ~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~ 45 (86)
T 2kzr_A 8 KGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILV 45 (86)
T ss_dssp TTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEE
T ss_pred CCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEe
Confidence 344433 55 889999999999999 8999999999964
No 222
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=76.70 E-value=5.9 Score=34.74 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=36.8
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCC
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRG 65 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI-fkG 65 (699)
..|+|+|-. ++..|.|.|..+.+..+||.+|.++..+ +...|+ |++
T Consensus 11 ~~~KVK~yy-~DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~ykd 57 (85)
T 1ip9_A 11 KTTKIKFYY-KDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKLF 57 (85)
T ss_dssp CCEEEEECB-TTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECCS
T ss_pred CceEEEEEe-cCcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEEecC
Confidence 558888866 4678999999999999999999999988 345444 443
No 223
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=76.49 E-value=5.3 Score=35.15 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=53.9
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecC
Q 005384 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 31 ~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlp 92 (699)
+.-.++-..++..||+.++.+.++..+...+...+..|+++++|.|-+|+-.-.+.+.+...
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik 66 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVI 66 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEE
Confidence 33456778899999999999999999999998898889999999999999888888877653
No 224
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=75.73 E-value=0.2 Score=52.57 Aligned_cols=36 Identities=8% Similarity=0.078 Sum_probs=32.6
Q ss_pred CCCccccccccCCchhhcccccc-CCCCCcchhHHHH
Q 005384 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (699)
Q Consensus 106 tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIf 141 (699)
+|+.+.+.|.+++||..||.+|+ ..|||+++|+||+
T Consensus 13 ~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~ 49 (320)
T 3shq_A 13 SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLN 49 (320)
T ss_dssp TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETT
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEee
Confidence 35677889999999999999999 9999999999994
No 225
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=75.20 E-value=9.3 Score=32.31 Aligned_cols=72 Identities=6% Similarity=0.041 Sum_probs=44.8
Q ss_pred EEEEEEeCC------CcEEEEEecCCCCHHHHHHHHHHHhCC------C-------CCCeEEEeCCeecCCccccccccc
Q 005384 19 IEIKIKTLD------SQTYTLRVDKQVPVPALKEQIASVTGV------L-------SEQQRLICRGKVLKDDQLLSAYHV 79 (699)
Q Consensus 19 MqItVKtl~------GKt~tLeVdpsdTV~dLKekIeektGI------P-------peqQRLIfkGKvLkDdkTLSdYGI 79 (699)
|+|+|+... |+...+++ ...||.+|++.+..++.- . ....++..+|+...+..- .++-|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 567777652 33334665 457999999999887531 0 013566677776543222 25678
Q ss_pred cCCCEEEEeeecC
Q 005384 80 EDGHTLHMVVRQP 92 (699)
Q Consensus 80 qdGSTLhLVlRlp 92 (699)
++|+.|.++-...
T Consensus 79 ~~gDeV~i~Ppv~ 91 (93)
T 3dwg_C 79 ADGDSVTILPAVA 91 (93)
T ss_dssp CTTCEEEEEECCT
T ss_pred CCCCEEEEECCCC
Confidence 9999998875443
No 226
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=74.28 E-value=19 Score=31.04 Aligned_cols=70 Identities=23% Similarity=0.348 Sum_probs=42.5
Q ss_pred EEEEEEeCC-------C-cEEEEEec--CCCCHHHHHHHHHHHhCCCCCCeEE---EeCCe------ecCCcc---cc--
Q 005384 19 IEIKIKTLD-------S-QTYTLRVD--KQVPVPALKEQIASVTGVLSEQQRL---ICRGK------VLKDDQ---LL-- 74 (699)
Q Consensus 19 MqItVKtl~-------G-Kt~tLeVd--psdTV~dLKekIeektGIPpeqQRL---IfkGK------vLkDdk---TL-- 74 (699)
|+|+||... | +...+++. ...||.+|++.+.+++.-. ..++ .-+|+ ++-|+. .+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~--~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~ 79 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINN--PNDVSIFIEDDSIRPGIITLINDTDWELEGE 79 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSS--GGGHHHHEETTEECTTEEEEETTEEGGGGTG
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchh--hHHHhhhccCCccccCeEEEECCEEccccCC
Confidence 788888762 2 45667776 5789999999999886311 1111 11121 222222 22
Q ss_pred ccccccCCCEEEEeee
Q 005384 75 SAYHVEDGHTLHMVVR 90 (699)
Q Consensus 75 SdYGIqdGSTLhLVlR 90 (699)
.++-|++|+.|.++-.
T Consensus 80 ~d~~L~dgDeVa~~Pp 95 (99)
T 2qjl_A 80 KDYILEDGDIISFTST 95 (99)
T ss_dssp GGCBCCTTCEEEEEEC
T ss_pred CCcCcCCCCEEEEECC
Confidence 3677999999988743
No 227
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=73.90 E-value=9.1 Score=43.83 Aligned_cols=77 Identities=23% Similarity=0.378 Sum_probs=53.2
Q ss_pred CCcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC----Ce-ecCC---------
Q 005384 16 ETTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR----GK-VLKD--------- 70 (699)
Q Consensus 16 ~~tMqItVKtl~---GKt~tLeVdpsdTV~dLKekIeekt--GIP------peqQRLIfk----GK-vLkD--------- 70 (699)
-.+|.|+|-..+ ...+.+.|-..|||.++|+||.+.. ++| +++..|-+. |+ .|.|
T Consensus 231 ~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~ 310 (627)
T 3ig3_A 231 YKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIEC 310 (627)
T ss_dssp CCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEET
T ss_pred ceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccC
Confidence 356778876554 3567889999999999999997753 222 355666542 33 3443
Q ss_pred c----cccccccccCCCEEEEeeecC
Q 005384 71 D----QLLSAYHVEDGHTLHMVVRQP 92 (699)
Q Consensus 71 d----kTLSdYGIqdGSTLhLVlRlp 92 (699)
+ .||++|+|.||++|-|+-+..
T Consensus 311 ~wkrLNTL~HY~V~Dga~v~L~p~~~ 336 (627)
T 3ig3_A 311 DWKRVNSLAHYQVTDGSLVALVPKQV 336 (627)
T ss_dssp TEEECCBTTTTTCCTTCEEEEEEC--
T ss_pred ceeEecchhhcCCCCCceEEEEeccc
Confidence 1 478999999999999988763
No 228
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=73.54 E-value=8.4 Score=43.42 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=56.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeC---C--eecCCccccccccccCCCEEEEeee
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICR---G--KVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpe-qQRLIfk---G--KvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
..|.|.|..+|| ++.|.|++++|+.+|-..|+.+.|+... ..=|.|. | ..|+.++.|.+.+++.+..+.|.+|
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 468999999998 6789999999999999999999998653 3455553 2 3567778888877666655555554
Q ss_pred c
Q 005384 91 Q 91 (699)
Q Consensus 91 l 91 (699)
.
T Consensus 82 v 82 (575)
T 2i1j_A 82 A 82 (575)
T ss_dssp E
T ss_pred E
Confidence 4
No 229
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=72.87 E-value=9.6 Score=31.13 Aligned_cols=56 Identities=11% Similarity=0.123 Sum_probs=38.5
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-----CCCCCeEEEeCCeecCCccccccccccCCCEEEEeee
Q 005384 29 QTYTLRVDKQVPVPALKEQIASVTG-----VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIeektG-----IPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
+...++ ....||.+|++.+..++. +......+..+|+.... ++-|++|+.|.++-.
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPP 77 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCC
Confidence 345555 567899999999875531 22334567788887642 567899999988743
No 230
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=72.83 E-value=7.5 Score=31.17 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=41.4
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
+|+.+ ++....||.+|.+++ +++.+...+..+|+.+... ...++-+++|+.|.++--.
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V 63 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVI 63 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESC
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeec
Confidence 66755 456678999999876 5666777778888877532 2345668999999887543
No 231
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=72.58 E-value=2.9 Score=38.69 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=30.2
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe
Q 005384 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC 63 (699)
Q Consensus 31 ~tLeVdpsdTV~dLKekIeektGIPpeqQRLIf 63 (699)
..+.|-.++|+.+||+.|++.+|+++++|||-+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 467899999999999999999999999999864
No 232
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=71.34 E-value=15 Score=31.90 Aligned_cols=69 Identities=10% Similarity=0.122 Sum_probs=43.6
Q ss_pred cEEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-CCC---------CCe-------EEEeCCeecCCccc
Q 005384 18 TIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-VLS---------EQQ-------RLICRGKVLKDDQL 73 (699)
Q Consensus 18 tMqItVKtl~------G-Kt~tLeVdpsdTV~dLKekIeektG-IPp---------eqQ-------RLIfkGKvLkDdkT 73 (699)
+|+|+|+... | +.+.++ ..||.+|.+.+..++. +.. ... .+..+|+......
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~- 78 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE- 78 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-
Confidence 5889999874 2 344444 6899999999988742 110 012 5666776553221
Q ss_pred cccccccCCCEEEEeee
Q 005384 74 LSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 74 LSdYGIqdGSTLhLVlR 90 (699)
-.++-|++|+.|.++-.
T Consensus 79 ~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 79 GLETLLKDSDEIGILPP 95 (99)
T ss_dssp STTSCCCTTEEEEEECC
T ss_pred CCCCCCCCCCEEEEECC
Confidence 23556899999988743
No 233
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=71.25 E-value=7.8 Score=32.28 Aligned_cols=60 Identities=10% Similarity=0.108 Sum_probs=44.5
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
+|+.+.+ ...||.+|.+. .+++++..-+.++|+.+.. ....++-|++||.|.++--..++
T Consensus 6 NG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 6 NGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp TTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCCCCC
T ss_pred CCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccccCC
Confidence 6776654 56899998764 5788888888899987743 34556779999999998766554
No 234
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=70.82 E-value=15 Score=33.17 Aligned_cols=77 Identities=12% Similarity=0.146 Sum_probs=54.0
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCe--ecCCccccccccccCCCEEEEee
Q 005384 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGK--VLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLI---fkGK--vLkDdkTLSdYGIqdGSTLhLVl 89 (699)
+...+-..|-..+...+++.+....|+.+|+..+++|.+...+++.|+ +.|. +|+++..--.-.+.-...|++..
T Consensus 6 ~sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~ 85 (104)
T 1wgy_A 6 SGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYR 85 (104)
T ss_dssp CSSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEE
T ss_pred CCCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEee
Confidence 334455667677778888999999999999999999999877778775 6674 45655443333344456677666
Q ss_pred ec
Q 005384 90 RQ 91 (699)
Q Consensus 90 Rl 91 (699)
+.
T Consensus 86 kd 87 (104)
T 1wgy_A 86 KD 87 (104)
T ss_dssp CC
T ss_pred hH
Confidence 53
No 235
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=70.54 E-value=1.5 Score=39.64 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=46.1
Q ss_pred CcEEEEEEeCC------CcEEEEEecC----CCCHHHHHHHHHHHhCCCCCCeEEEe-CC--e------ecCCccc---c
Q 005384 17 TTIEIKIKTLD------SQTYTLRVDK----QVPVPALKEQIASVTGVLSEQQRLIC-RG--K------VLKDDQL---L 74 (699)
Q Consensus 17 ~tMqItVKtl~------GKt~tLeVdp----sdTV~dLKekIeektGIPpeqQRLIf-kG--K------vLkDdkT---L 74 (699)
++|+|+||... |+...+++.. ..||.+|-+.|.+++. ..+-+|+. +| + +|-+++. |
T Consensus 3 ~~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l 80 (110)
T 2k9x_A 3 NHNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLVNSCDAEVV 80 (110)
T ss_dssp CSSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEESSSBHHHH
T ss_pred CccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEECCeeeecc
Confidence 34888888774 3555666663 2599999888888752 22334432 24 2 3333322 2
Q ss_pred --ccccccCCCEEEEeeecCC
Q 005384 75 --SAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 75 --SdYGIqdGSTLhLVlRlpg 93 (699)
.+|.|++|+.|.++-...+
T Consensus 81 ~gldt~L~dgD~V~fistlhg 101 (110)
T 2k9x_A 81 GGMDYVLNDGDTVEFISTLHG 101 (110)
T ss_dssp TSSCCCCCSSCEEEEEECCCC
T ss_pred CCcccCCCCcCEEEEeCCCcc
Confidence 3688999999888655544
No 236
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=66.15 E-value=9.7 Score=30.88 Aligned_cols=56 Identities=4% Similarity=0.150 Sum_probs=39.9
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe--EEEeCCeecCCccccccccccCCCEEEEeee
Q 005384 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ--RLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIeektGIPpeqQ--RLIfkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
+...+++....||.+|++.+..++.- .+.. .+..+|+.... ++-|++|+.|.++-.
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQK-----SDFIQPNDTVALIPP 73 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEECT-----TSEECTTCEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc-hhcceEEEEECCEECCC-----CCCcCCCCEEEEECC
Confidence 35566777778999999999876420 1233 67788887764 367899999988743
No 237
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=64.26 E-value=22 Score=36.59 Aligned_cols=53 Identities=15% Similarity=0.273 Sum_probs=41.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC-eec-CCccccccccc
Q 005384 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG-KVL-KDDQLLSAYHV 79 (699)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkG-KvL-kDdkTLSdYGI 79 (699)
.-....+.+.+..|+.+||++|++.++++++.|.|+|.+ +.. +.......|.-
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 345567889999999999999999999999999999998 443 33445555543
No 238
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=61.27 E-value=13 Score=31.37 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=44.0
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCC-CCCeEEEeCCeecCCccccccccccCCCEEEEeeecCCC
Q 005384 27 DSQTYTLRVDKQVPVPALKEQIASVTGVL-SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (699)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIeektGIP-peqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRlpgg 94 (699)
+|+.+.+......||.+|.+. .+++ ++..-+.++|+.+.. ....++-|++||.|.++--..++
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECCCCCCS
T ss_pred CCEEEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEeeecCC
Confidence 677655321156899998875 4677 777778889988743 24456678999999998766554
No 239
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=59.84 E-value=17 Score=28.90 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=41.3
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeeec
Q 005384 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 26 l~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
++|+.+.+ ...||.+|.+.+ +++++...+..+|+.+..+ ...++-|++|+.|.++--.
T Consensus 4 vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V 61 (64)
T 2cu3_A 4 LNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALM 61 (64)
T ss_dssp ETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECC
T ss_pred ECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeec
Confidence 36776654 568999999876 4556667777888876432 3445678999999988543
No 240
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=59.49 E-value=0.54 Score=40.99 Aligned_cols=40 Identities=3% Similarity=-0.119 Sum_probs=34.8
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHHhh
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfavl 144 (699)
.+++.+.+.|+++.++..|+..+. +.|++++++||+|.--
T Consensus 15 ~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~ 55 (94)
T 2io1_B 15 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ 55 (94)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTE
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCE
Confidence 456778899999999999999988 9999999999998633
No 241
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=55.30 E-value=11 Score=43.41 Aligned_cols=51 Identities=25% Similarity=0.331 Sum_probs=41.9
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-ecCCccccccc
Q 005384 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK-VLKDDQLLSAY 77 (699)
Q Consensus 27 ~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGK-vLkDdkTLSdY 77 (699)
..+.+.+.+.++.|+.+||..|++.++|+++.|.|++... .|........|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 3566778999999999999999999999999999998854 55555565555
No 242
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.08 E-value=0.58 Score=43.21 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=32.2
Q ss_pred CCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 107 g~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
+..+...++++.+|..||..+. ..++|+++|||||+
T Consensus 26 ~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~ 62 (118)
T 2daf_A 26 GQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS 62 (118)
T ss_dssp CCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET
T ss_pred CcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC
Confidence 4456788999999999999988 88999999999987
No 243
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=54.26 E-value=17 Score=28.95 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=39.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEeee
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
|.|+|+..+|+. +++....|+.+|-+.|..... ..-.-...+|+..+- ++-|++|+.|.++-.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl-----~~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPL-----SYVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCT-----TCBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCC-----CcCcCCCCEEEEEEC
Confidence 567777777876 456678999999888733221 111222457765543 356777888887753
No 244
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=51.95 E-value=20 Score=32.10 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=36.5
Q ss_pred EEEEEEeCC-------CcEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CeEEEeCC
Q 005384 19 IEIKIKTLD-------SQTYTLRVDKQVPVPALKEQIASVTGVLSE-----QQRLICRG 65 (699)
Q Consensus 19 MqItVKtl~-------GKt~tLeVdpsdTV~dLKekIeektGIPpe-----qQRLIfkG 65 (699)
|+|+|...+ +..+.|-|.++.+..+|..+|.+|++++.. ..+|-|+.
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 788887653 567899999999999999999999886522 24666654
No 245
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=47.15 E-value=24 Score=39.33 Aligned_cols=78 Identities=10% Similarity=0.222 Sum_probs=60.1
Q ss_pred CCCCcEEEEEEeCC--CcEEE----EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC----C--eecC-Cccccccc--c
Q 005384 14 SSETTIEIKIKTLD--SQTYT----LRVDKQVPVPALKEQIASVTGVLSEQQRLICR----G--KVLK-DDQLLSAY--H 78 (699)
Q Consensus 14 ~s~~tMqItVKtl~--GKt~t----LeVdpsdTV~dLKekIeektGIPpeqQRLIfk----G--KvLk-DdkTLSdY--G 78 (699)
.....+-|++|.-+ .+++. +-|+.+++|.+|-..|.++.|+|++.--++|. + ..|+ .+.+|.++ .
T Consensus 126 ~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~e 205 (530)
T 2ylm_A 126 DKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDE 205 (530)
T ss_dssp CTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTT
T ss_pred CCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhc
Confidence 34456999999876 33433 57889999999999999999999976655554 2 3566 57899999 9
Q ss_pred ccCCCEEEEeeec
Q 005384 79 VEDGHTLHMVVRQ 91 (699)
Q Consensus 79 IqdGSTLhLVlRl 91 (699)
|.+|++|.+=...
T Consensus 206 L~~GdII~fQ~~~ 218 (530)
T 2ylm_A 206 LMDGDIIVFQKDD 218 (530)
T ss_dssp CCTTEEEEEEECC
T ss_pred ccCCCEEEEEecC
Confidence 9999998776543
No 246
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=46.65 E-value=15 Score=32.58 Aligned_cols=59 Identities=8% Similarity=0.240 Sum_probs=41.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCC-----------CeEEEeCC-eecCC------ccccccccccCCCEEEEe
Q 005384 30 TYTLRVDKQVPVPALKEQIASVTGVLSE-----------QQRLICRG-KVLKD------DQLLSAYHVEDGHTLHMV 88 (699)
Q Consensus 30 t~tLeVdpsdTV~dLKekIeektGIPpe-----------qQRLIfkG-KvLkD------dkTLSdYGIqdGSTLhLV 88 (699)
...++|++++|+.+|-+.+.+.-.+-.. ...|++.. ..|+. +++|.++|+.+|+.|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4568999999999999999985332221 23444444 23432 477999999999998884
No 247
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=45.67 E-value=65 Score=26.51 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=37.9
Q ss_pred EEecCCCCHHHHHHHHHHHhC------C-----CCCCeEEEeCCeecCCccccccccccCCCEEEEeee
Q 005384 33 LRVDKQVPVPALKEQIASVTG------V-----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 33 LeVdpsdTV~dLKekIeektG------I-----PpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
++++...||.+|.+.+..++. + ......+..+|+..... .-.++-|++|+.|.++-.
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCC
Confidence 456556899999999987742 1 01345677778766422 123556899999988743
No 248
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=45.12 E-value=51 Score=30.48 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=51.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC------CeEEE---eCCe--ecCCccccccccccCCCEE
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE------QQRLI---CRGK--VLKDDQLLSAYHVEDGHTL 85 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpe------qQRLI---fkGK--vLkDdkTLSdYGIqdGSTL 85 (699)
..+-..|-..+...+++.+....|+.+|+..+++|.+...+ ++.|+ +.|. +|+++..--.-.+.-...|
T Consensus 8 Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRL 87 (120)
T 2dhz_A 8 DEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHL 87 (120)
T ss_dssp CCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEE
T ss_pred CcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceE
Confidence 44667777777777789999999999999999999987554 67665 6774 4565543222233345667
Q ss_pred EEeee
Q 005384 86 HMVVR 90 (699)
Q Consensus 86 hLVlR 90 (699)
++..|
T Consensus 88 fvc~k 92 (120)
T 2dhz_A 88 FACTR 92 (120)
T ss_dssp EEECT
T ss_pred EEeeh
Confidence 66655
No 249
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.17 E-value=7.1 Score=33.37 Aligned_cols=36 Identities=8% Similarity=-0.068 Sum_probs=30.8
Q ss_pred CCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 107 g~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
+......+.+++||..||.+|+ .-|+|+..|+|.+.
T Consensus 22 ~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~ 58 (97)
T 1wjn_A 22 RQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYE 58 (97)
T ss_dssp SCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEE
Confidence 4455678889999999999999 89999999998753
No 250
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=43.47 E-value=7.9 Score=35.43 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=52.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCC---eecCCccccccccccCCCEEEEee
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRG---KVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPp--eqQRLIfkG---KvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
++|+|..++ ...+++|..+.-|..|.-+|-++..++. .+--|-.-- .+|+-..+|..|||+.+..+++.-
T Consensus 27 L~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp 101 (112)
T 2lgx_A 27 LSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTP 101 (112)
T ss_dssp EECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC
T ss_pred EEEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecC
Confidence 566665554 7788999999999999999998877654 233333322 257888999999999999887753
No 251
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=43.40 E-value=17 Score=40.62 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=29.6
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE
Q 005384 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLI 62 (699)
Q Consensus 31 ~tLeVdpsdTV~dLKekIeektGIPpeqQRLI 62 (699)
..++|..++|+.+||++|++.+|+++++|||-
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 35789999999999999999999999999985
No 252
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=42.03 E-value=1.2 Score=36.56 Aligned_cols=38 Identities=3% Similarity=-0.082 Sum_probs=32.9
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+|+.+.+.|+++.++..++.... +.|+++.++||+|.
T Consensus 9 ~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd 47 (72)
T 1wm3_A 9 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD 47 (72)
T ss_dssp TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEEC
Confidence 356677889999999999999888 89999999999886
No 253
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=41.86 E-value=46 Score=36.66 Aligned_cols=47 Identities=4% Similarity=0.063 Sum_probs=40.6
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEe
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLIC 63 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPp--eqQRLIf 63 (699)
..|.+.|..++|....+.|+..+|+.+|-+.|+++.|+.. +..-|.+
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 4589999999999999999999999999999999999974 3445554
No 254
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=41.10 E-value=2.9 Score=36.30 Aligned_cols=40 Identities=3% Similarity=-0.119 Sum_probs=34.2
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHHhh
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfavl 144 (699)
.+|+.+.+.|+++.++..|+.... +.|+++.++||+|.--
T Consensus 13 ~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~ 53 (91)
T 2io0_B 13 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ 53 (91)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCE
Confidence 346678899999999999999888 8999999999998633
No 255
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=41.02 E-value=42 Score=31.36 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=39.7
Q ss_pred EEec----CCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeec-----CC--ccccccccccCCCEEEEee
Q 005384 33 LRVD----KQVPVPALKEQIASVTGVLSEQQRLIC--RGKVL-----KD--DQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 33 LeVd----psdTV~dLKekIeektGIPpeqQRLIf--kGKvL-----kD--dkTLSdYGIqdGSTLhLVl 89 (699)
|.|+ ...|+.+|-+.|..++|+.. +.-++- ..+.| +| +++|+++||++|+.|.++=
T Consensus 10 l~v~~~dl~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 10 IKLSSDCLNKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp EEECHHHHHHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred EEeCcccccccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 4555 35799999888999999763 444431 23444 23 4899999999999988764
No 256
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=40.71 E-value=1.5e+02 Score=26.63 Aligned_cols=68 Identities=12% Similarity=0.159 Sum_probs=41.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC--CeEE--EeCCeecCCccccccccccCCCEEEEeeec
Q 005384 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE--QQRL--ICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 19 MqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpe--qQRL--IfkGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
=-++|+..+.+. ..-|- -.+..+|+.|..++++++.. ..+| ...|..++|+..+..+ +..|+.+++..
T Consensus 19 kPfkV~~~~~r~-k~GV~-A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL---p~nT~lmvL~~ 90 (100)
T 1f2r_I 19 KPCLLRRNHSRD-QHGVA-ASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL---PSNTKFVALAC 90 (100)
T ss_dssp EEEEEEETTEEE-EEEEE-ESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS---CSCCEEEEECS
T ss_pred CCEEEeeCCCcc-EEeEE-cCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC---CCCCEEEEEcC
Confidence 345566433333 43332 35799999999999999652 3444 4568888777554433 24555555543
No 257
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=40.03 E-value=61 Score=28.56 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=49.0
Q ss_pred CCcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHH--H-hCCCCCCeEEEeCCeecCCccccccccccCCCEEEEee
Q 005384 16 ETTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIAS--V-TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 16 ~~tMqItVKtl~---GKt~tLeVdpsdTV~dLKekIee--k-tGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
-++|.|.|...- .+.+.+++....||.++-+..-- + ..|......+..+|+..+ .++-+++|+.|-++-
T Consensus 10 ~~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 10 LNQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred cceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 356777776542 23456788899999998877643 2 234555677888888776 456688999999875
Q ss_pred ec
Q 005384 90 RQ 91 (699)
Q Consensus 90 Rl 91 (699)
-.
T Consensus 85 pl 86 (97)
T 2hj1_A 85 PL 86 (97)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 258
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=39.41 E-value=66 Score=28.15 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=32.6
Q ss_pred CcEEEEEEeCCCcEE-EEEec-CCCCHHHHHHHHHHHhCCCCCCeEE
Q 005384 17 TTIEIKIKTLDSQTY-TLRVD-KQVPVPALKEQIASVTGVLSEQQRL 61 (699)
Q Consensus 17 ~tMqItVKtl~GKt~-tLeVd-psdTV~dLKekIeektGIPpeqQRL 61 (699)
.+..|+.|....+.+ .+.++ ...+|.+||.+|..+.++...+.-|
T Consensus 5 ~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL 51 (86)
T 2c7h_A 5 SMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDL 51 (86)
T ss_dssp TBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred ceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence 445677777766554 47777 6799999999999988876544443
No 259
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=38.38 E-value=1.1 Score=37.59 Aligned_cols=38 Identities=5% Similarity=0.010 Sum_probs=32.8
Q ss_pred CCCC-ccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSR-SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~-titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+++ .+.+.|+++.++..|+.... +.|++++++||+|.
T Consensus 15 ~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fd 54 (79)
T 3a4r_A 15 KEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFD 54 (79)
T ss_dssp SSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEET
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC
Confidence 4564 67899999999999999888 89999999999885
No 260
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=35.63 E-value=3.7 Score=37.01 Aligned_cols=38 Identities=3% Similarity=-0.013 Sum_probs=33.2
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHH
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfa 142 (699)
.+++.+.+.|+++.++..|+.... +.|++++++||+|.
T Consensus 34 ~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFd 72 (110)
T 2k8h_A 34 ADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFD 72 (110)
T ss_dssp TTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESS
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC
Confidence 346677899999999999999888 89999999999985
No 261
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.58 E-value=72 Score=28.17 Aligned_cols=67 Identities=12% Similarity=0.225 Sum_probs=44.3
Q ss_pred EEEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCCccccccccccCCCEEEEeeec
Q 005384 19 IEIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (699)
Q Consensus 19 MqItVKtl~-GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIf--kGKvLkDdkTLSdYGIqdGSTLhLVlRl 91 (699)
--++|+..+ .+.+-|-. .+.++|+.|..+++.++....+|+. +|..++|+..+..+ +..|+.+++..
T Consensus 10 kpfkV~~~~Rs~k~GV~A---~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 10 RPFRVSNHDRSSRRGVMA---SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp EEEEEECTTSCCCEEEEE---SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CCEEEecCCCCeEEeEEc---CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 345565544 23344433 4799999999999999765666654 58888877655443 36677777764
No 262
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=33.16 E-value=13 Score=30.68 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=35.3
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCccccccccccCCCEEEEee
Q 005384 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 33 LeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvLkDdkTLSdYGIqdGSTLhLVl 89 (699)
+++....||.+|.+.+ +++.+...+..+|+.+..+ +-|++|+.|.++-
T Consensus 25 ~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p 72 (77)
T 1rws_A 25 IEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC
T ss_pred EECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc
Confidence 4556678999998765 4666667788889887654 6688888887763
No 263
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.89 E-value=4.6 Score=35.90 Aligned_cols=39 Identities=3% Similarity=-0.108 Sum_probs=33.6
Q ss_pred CCCCccccccccCCchhhcccccc-CCCCCcchhHHHHHh
Q 005384 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (699)
Q Consensus 105 ~tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfav 143 (699)
.+++.+.+.|+++.++..|+.... +.|++++++||+|.-
T Consensus 32 ~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG 71 (104)
T 1wz0_A 32 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDG 71 (104)
T ss_dssp SSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSS
T ss_pred CCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECC
Confidence 346677899999999999999888 899999999999863
No 264
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=30.71 E-value=4.4 Score=35.00 Aligned_cols=40 Identities=3% Similarity=-0.124 Sum_probs=33.7
Q ss_pred CCCccccccccCCchhhcccccc-CCCCCcchhHHHHHhhh
Q 005384 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (699)
Q Consensus 106 tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfavl~ 145 (699)
+++.+.+.|.++.++..|+.... +.|++++++||+|.--.
T Consensus 26 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~ 66 (93)
T 2d07_B 26 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 66 (93)
T ss_dssp TSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEE
T ss_pred CCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEE
Confidence 45667789999999999999888 89999999999886433
No 265
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=29.24 E-value=2.1e+02 Score=24.99 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=37.3
Q ss_pred CCcEEEEEEeCCCcEEEEEec--CCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 005384 16 ETTIEIKIKTLDSQTYTLRVD--KQVPVPALKEQIASVTGVLSEQQRLICRG 65 (699)
Q Consensus 16 ~~tMqItVKtl~GKt~tLeVd--psdTV~dLKekIeektGIPpeqQRLIfkG 65 (699)
...++|+.|. +.....+.++ ...+-++|+.+|+....++.....|.|..
T Consensus 4 ~~~l~vKskf-~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 4 MSIVEVKSKF-DAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD 54 (86)
T ss_dssp -CEEEEEEEE-TTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC
T ss_pred CCEEEEEeec-CCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC
Confidence 3557788877 5666566665 45899999999999999877777787765
No 266
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=27.83 E-value=2.4e+02 Score=24.62 Aligned_cols=72 Identities=8% Similarity=0.095 Sum_probs=47.0
Q ss_pred CCCcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec-CCccccc----cccccCCCEE
Q 005384 15 SETTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL-KDDQLLS----AYHVEDGHTL 85 (699)
Q Consensus 15 s~~tMqItVKtl~G----Kt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfkGKvL-kDdkTLS----dYGIqdGSTL 85 (699)
...++.|.+|..+. +.-.+.|..+.|+.+|...|.++..+ +..-|..+...+ ..+.+++ .|+ ++..|
T Consensus 5 ~~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk--~dg~L 80 (91)
T 3w1s_C 5 NIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFK--TNDEL 80 (91)
T ss_dssp -CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHC--BTTEE
T ss_pred CCCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhC--CCCEE
Confidence 45567777777532 33456789999999999999999988 556666676543 4444543 334 45666
Q ss_pred EEeee
Q 005384 86 HMVVR 90 (699)
Q Consensus 86 hLVlR 90 (699)
++...
T Consensus 81 yv~Ys 85 (91)
T 3w1s_C 81 IVSYC 85 (91)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66653
No 267
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=27.49 E-value=5.9 Score=35.48 Aligned_cols=39 Identities=5% Similarity=-0.067 Sum_probs=33.4
Q ss_pred CCCccccccccCCchhhcccccc-CCCCCcchhHHHHHhh
Q 005384 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (699)
Q Consensus 106 tg~titl~V~psdTVe~VK~~Iq-~eGIPpdqQRLIfavl 144 (699)
+++.+.+.|++++++..|+.... +.|++++++||+|.--
T Consensus 39 ~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~ 78 (106)
T 2eke_C 39 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 78 (106)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTE
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCe
Confidence 36677789999999999999888 8999999999998643
No 268
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=26.68 E-value=2.1e+02 Score=24.91 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=47.8
Q ss_pred EEEEecCCCCHHHHHHHHHHHh-C--CCC--C-CeEEEeCC--eecCCccccccccccCCCEEEEeee
Q 005384 31 YTLRVDKQVPVPALKEQIASVT-G--VLS--E-QQRLICRG--KVLKDDQLLSAYHVEDGHTLHMVVR 90 (699)
Q Consensus 31 ~tLeVdpsdTV~dLKekIeekt-G--IPp--e-qQRLIfkG--KvLkDdkTLSdYGIqdGSTLhLVlR 90 (699)
.-+.|+..+|+.++-++++... | +.+ . -.|..++| +.|..+.|+++-||+.-..|.+...
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 3468999999999999997642 2 322 2 46778999 8999999999999999988887653
No 269
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=26.53 E-value=1.1e+02 Score=26.99 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=34.4
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEeCCee
Q 005384 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLICRGKV 67 (699)
Q Consensus 29 Kt~tLeVdpsdTV~dLKekIeektGIPpeqQ-RLIfkGKv 67 (699)
..+.|.|++..+=.++|+.|++.+++.+..- .|++.||.
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 6899999999999999999999999999876 46677764
No 270
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=25.84 E-value=84 Score=35.98 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=36.7
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS 56 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPp 56 (699)
..|.+.|..++|....+.|+..+|+.+|-+.|+.+.++..
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e 301 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKD 301 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSS
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcc
Confidence 4689999999999999999999999999999999998753
No 271
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=25.52 E-value=1.1e+02 Score=31.66 Aligned_cols=72 Identities=13% Similarity=0.238 Sum_probs=50.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-------CeecCCcccccc----ccccCCCEE
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-------GKVLKDDQLLSA----YHVEDGHTL 85 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfk-------GKvLkDdkTLSd----YGIqdGSTL 85 (699)
..+-|+|-..+|....|.|++++|+.+|-+.+..+.++....-..+|. -+.|+|...|.+ ........|
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l 109 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKL 109 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEE
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceE
Confidence 445677777789999999999999999999999988865544333332 256777766544 344455565
Q ss_pred EEe
Q 005384 86 HMV 88 (699)
Q Consensus 86 hLV 88 (699)
.+.
T Consensus 110 ~f~ 112 (281)
T 4gmv_A 110 IFM 112 (281)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 272
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=24.26 E-value=3.6e+02 Score=23.58 Aligned_cols=71 Identities=11% Similarity=0.093 Sum_probs=53.0
Q ss_pred EEEEEEeCCCcE-EEEEecCCCCHHHHHHHHHHH-hC--CCC--CCeEEEeCCee--cCCccccccccccCCCEEEEee
Q 005384 19 IEIKIKTLDSQT-YTLRVDKQVPVPALKEQIASV-TG--VLS--EQQRLICRGKV--LKDDQLLSAYHVEDGHTLHMVV 89 (699)
Q Consensus 19 MqItVKtl~GKt-~tLeVdpsdTV~dLKekIeek-tG--IPp--eqQRLIfkGKv--LkDdkTLSdYGIqdGSTLhLVl 89 (699)
+-|..+..+.-. .-+.|+..+|+.++-++++.. .| +.+ .-.|..++|.. |.++.++++-||+.-+.|.++.
T Consensus 4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred cceEEEeccccEEEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 345555543322 346899999999999999774 22 322 35788899987 9999999999999999988875
No 273
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=22.20 E-value=59 Score=27.67 Aligned_cols=36 Identities=22% Similarity=0.157 Sum_probs=29.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCC-----CCCeEEEeCC
Q 005384 30 TYTLRVDKQVPVPALKEQIASVTGVL-----SEQQRLICRG 65 (699)
Q Consensus 30 t~tLeVdpsdTV~dLKekIeektGIP-----peqQRLIfkG 65 (699)
.+.|.|.++.+..+|..+|.+++++. ....+|-|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 57889999999999999999999975 3455666664
No 274
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=21.35 E-value=1.7e+02 Score=28.67 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=35.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC
Q 005384 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ 58 (699)
Q Consensus 17 ~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektGIPpeq 58 (699)
..+.|.|-..+|....+.|++.+|+.+|-+.+.++.++..+.
T Consensus 33 ~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~ 74 (291)
T 3tca_A 33 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNV 74 (291)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCT
T ss_pred cceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCC
Confidence 345677777789999999999999999999999999987644
No 275
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=20.91 E-value=1.5e+02 Score=26.84 Aligned_cols=75 Identities=9% Similarity=0.085 Sum_probs=49.4
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC-CC-------CCCeEEEe---CCe--ecCCc-ccccccccc
Q 005384 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG-VL-------SEQQRLIC---RGK--VLKDD-QLLSAYHVE 80 (699)
Q Consensus 15 s~~tMqItVKtl~GKt~tLeVdpsdTV~dLKekIeektG-IP-------peqQRLIf---kGK--vLkDd-kTLSdYGIq 80 (699)
.+..+.|.+-..+|-.+.++|..+.|+.+||+.+-+... .| ++.-.+.+ .|. .|.|+ +.|.|+...
T Consensus 16 ~~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 16 MPPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred CCCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 346678888888999999999999999999999966533 21 12222222 122 46444 778887765
Q ss_pred CCCEEEEeee
Q 005384 81 DGHTLHMVVR 90 (699)
Q Consensus 81 dGSTLhLVlR 90 (699)
-..|.|+-|
T Consensus 96 -~piLklver 104 (108)
T 2v1y_A 96 -QPFLKVIEP 104 (108)
T ss_dssp -SSEEEEECC
T ss_pred -ceEEEEEee
Confidence 455655554
No 276
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=20.39 E-value=2.8e+02 Score=24.28 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=51.9
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCCccccccccccCCCEEEEeeecCC
Q 005384 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (699)
Q Consensus 31 ~tLeVdpsdTV~dLKekIeektGIPpeqQRLIfk-GKvLkDdkTLSdYGIqdGSTLhLVlRlpg 93 (699)
..|.|........+-+-.++++.+++..--+|.+ |--+...++-...-++.|+.|.|+-|-+-
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRV 89 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRV 89 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSS
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccccc
Confidence 3467888888888888889999999988877766 66677888888888999999999987654
No 277
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=20.15 E-value=1.3e+02 Score=26.38 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=34.5
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEeCCee
Q 005384 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLICRGKV 67 (699)
Q Consensus 28 GKt~tLeVdpsdTV~dLKekIeektGIPpeqQ-RLIfkGKv 67 (699)
..++.|.|++..+=.++|+.|++.+++.+..- .|+..||.
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKK 61 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCce
Confidence 37899999999999999999999999998776 45677764
Done!