Query 005385
Match_columns 699
No_of_seqs 264 out of 1801
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 22:37:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.4 1.4E-13 3E-18 147.7 4.8 68 630-698 213-281 (348)
2 PF13639 zf-RING_2: Ring finge 99.3 4.4E-13 9.5E-18 103.3 2.4 44 648-691 1-44 (44)
3 COG5540 RING-finger-containing 99.1 4E-11 8.8E-16 125.5 3.9 51 646-696 322-373 (374)
4 PF12678 zf-rbx1: RING-H2 zinc 99.1 4.5E-11 9.7E-16 102.4 3.4 48 644-691 16-73 (73)
5 PHA02929 N1R/p28-like protein; 99.0 2.2E-10 4.9E-15 118.2 5.1 51 645-695 172-227 (238)
6 COG5243 HRD1 HRD ubiquitin lig 99.0 2.1E-10 4.7E-15 122.7 4.6 51 644-694 284-344 (491)
7 KOG0317 Predicted E3 ubiquitin 98.9 4.6E-10 9.9E-15 117.3 4.1 52 643-697 235-286 (293)
8 PLN03208 E3 ubiquitin-protein 98.9 1.7E-09 3.7E-14 108.3 4.6 49 645-696 16-80 (193)
9 KOG0320 Predicted E3 ubiquitin 98.8 2.3E-09 5.1E-14 105.5 3.7 53 642-695 126-178 (187)
10 KOG0823 Predicted E3 ubiquitin 98.8 2.9E-09 6.2E-14 108.6 3.6 51 644-697 44-97 (230)
11 PF13920 zf-C3HC4_3: Zinc fing 98.8 3.7E-09 8E-14 83.7 2.6 46 647-695 2-48 (50)
12 cd00162 RING RING-finger (Real 98.7 8.5E-09 1.8E-13 76.9 3.9 44 649-694 1-45 (45)
13 PF13923 zf-C3HC4_2: Zinc fing 98.7 4.9E-09 1.1E-13 79.1 2.3 39 650-690 1-39 (39)
14 KOG0802 E3 ubiquitin ligase [P 98.7 8.3E-09 1.8E-13 117.7 2.9 51 645-695 289-341 (543)
15 smart00504 Ubox Modified RING 98.6 2.7E-08 5.9E-13 81.2 4.2 46 648-696 2-47 (63)
16 PHA02926 zinc finger-like prot 98.6 2.4E-08 5.1E-13 101.7 3.8 51 645-695 168-230 (242)
17 PF15227 zf-C3HC4_4: zinc fing 98.6 2.3E-08 4.9E-13 77.3 2.5 38 650-690 1-42 (42)
18 PF12861 zf-Apc11: Anaphase-pr 98.6 4.2E-08 9.1E-13 86.7 3.9 50 646-695 20-82 (85)
19 PF14634 zf-RING_5: zinc-RING 98.6 4.4E-08 9.5E-13 76.0 3.5 44 649-692 1-44 (44)
20 TIGR00599 rad18 DNA repair pro 98.5 5.3E-08 1.1E-12 107.2 4.1 50 644-696 23-72 (397)
21 PF00097 zf-C3HC4: Zinc finger 98.5 5.5E-08 1.2E-12 73.5 2.5 39 650-690 1-41 (41)
22 smart00184 RING Ring finger. E 98.5 1.3E-07 2.9E-12 68.0 3.6 38 650-690 1-39 (39)
23 COG5574 PEX10 RING-finger-cont 98.3 2.4E-07 5.2E-12 96.3 2.7 50 645-697 213-264 (271)
24 COG5194 APC11 Component of SCF 98.3 5.4E-07 1.2E-11 78.6 3.9 49 646-694 19-80 (88)
25 KOG2164 Predicted E3 ubiquitin 98.2 4.8E-07 1E-11 101.0 2.7 47 647-696 186-237 (513)
26 KOG0287 Postreplication repair 98.2 4E-07 8.6E-12 97.2 1.5 49 645-696 21-69 (442)
27 KOG0828 Predicted E3 ubiquitin 98.2 6.1E-07 1.3E-11 99.4 2.4 52 645-696 569-635 (636)
28 COG5432 RAD18 RING-finger-cont 98.2 7.5E-07 1.6E-11 93.5 2.4 47 645-694 23-69 (391)
29 PF13445 zf-RING_UBOX: RING-ty 98.1 1.6E-06 3.5E-11 67.7 3.1 38 650-688 1-43 (43)
30 PF04564 U-box: U-box domain; 98.1 1.1E-06 2.3E-11 75.3 2.3 48 646-696 3-51 (73)
31 KOG2177 Predicted E3 ubiquitin 98.1 1.4E-06 2.9E-11 86.6 1.9 45 645-692 11-55 (386)
32 KOG2930 SCF ubiquitin ligase, 98.0 1.4E-06 3E-11 79.3 1.2 55 639-693 38-106 (114)
33 KOG1734 Predicted RING-contain 98.0 1.1E-06 2.4E-11 91.5 0.5 51 645-695 222-281 (328)
34 KOG1493 Anaphase-promoting com 98.0 2E-06 4.2E-11 74.6 1.0 52 643-694 16-80 (84)
35 smart00744 RINGv The RING-vari 97.9 1.2E-05 2.6E-10 64.3 3.7 42 649-691 1-49 (49)
36 COG5219 Uncharacterized conser 97.8 4.3E-06 9.2E-11 98.1 0.6 51 645-695 1467-1523(1525)
37 KOG2879 Predicted E3 ubiquitin 97.8 1.2E-05 2.6E-10 84.3 2.8 52 643-696 235-288 (298)
38 PF11793 FANCL_C: FANCL C-term 97.7 6.2E-06 1.3E-10 70.4 -0.6 50 647-696 2-67 (70)
39 KOG4265 Predicted E3 ubiquitin 97.7 2.1E-05 4.5E-10 85.1 2.9 49 645-696 288-337 (349)
40 KOG4172 Predicted E3 ubiquitin 97.5 2.3E-05 4.9E-10 64.2 0.6 47 647-696 7-55 (62)
41 KOG0311 Predicted E3 ubiquitin 97.5 1.5E-05 3.3E-10 85.9 -1.1 50 645-696 41-91 (381)
42 KOG1039 Predicted E3 ubiquitin 97.5 4.5E-05 9.7E-10 83.1 2.1 50 645-694 159-220 (344)
43 KOG0825 PHD Zn-finger protein 97.5 2.1E-05 4.6E-10 91.1 -0.6 52 645-696 121-172 (1134)
44 KOG0978 E3 ubiquitin ligase in 97.5 3.7E-05 8.1E-10 89.6 1.3 48 646-696 642-690 (698)
45 KOG4445 Uncharacterized conser 97.4 5.6E-05 1.2E-09 80.1 1.6 56 642-697 110-188 (368)
46 KOG4159 Predicted E3 ubiquitin 97.3 0.00014 3E-09 80.7 3.6 49 645-696 82-130 (398)
47 PF14835 zf-RING_6: zf-RING of 97.3 4.7E-05 1E-09 64.3 -0.5 45 647-695 7-51 (65)
48 KOG1785 Tyrosine kinase negati 97.2 0.00014 3E-09 79.6 1.2 47 648-697 370-418 (563)
49 KOG0804 Cytoplasmic Zn-finger 97.0 0.00024 5.2E-09 78.8 1.7 50 645-696 173-223 (493)
50 KOG1428 Inhibitor of type V ad 97.0 0.00041 8.9E-09 84.4 3.2 53 643-695 3482-3544(3738)
51 KOG4692 Predicted E3 ubiquitin 96.9 0.0006 1.3E-08 73.8 3.4 49 645-696 420-468 (489)
52 KOG0297 TNF receptor-associate 96.7 0.00068 1.5E-08 75.2 2.0 50 644-696 18-68 (391)
53 KOG2660 Locus-specific chromos 96.7 0.00039 8.5E-09 74.8 0.1 49 645-695 13-61 (331)
54 KOG1002 Nucleotide excision re 96.7 0.0013 2.8E-08 74.3 3.8 50 643-695 532-586 (791)
55 PF11789 zf-Nse: Zinc-finger o 96.7 0.0012 2.6E-08 54.6 2.4 43 645-689 9-53 (57)
56 COG5152 Uncharacterized conser 96.6 0.00082 1.8E-08 68.0 1.2 44 648-694 197-240 (259)
57 KOG2114 Vacuolar assembly/sort 96.5 0.0017 3.7E-08 76.7 3.4 44 646-694 839-882 (933)
58 KOG1941 Acetylcholine receptor 96.5 0.00094 2E-08 73.2 0.8 48 646-693 364-414 (518)
59 KOG4275 Predicted E3 ubiquitin 96.4 0.0012 2.6E-08 70.2 1.0 42 647-695 300-342 (350)
60 KOG1813 Predicted E3 ubiquitin 96.3 0.0018 3.8E-08 69.0 1.6 47 647-696 241-287 (313)
61 KOG3039 Uncharacterized conser 96.2 0.004 8.7E-08 64.9 3.7 51 646-696 220-271 (303)
62 KOG1571 Predicted E3 ubiquitin 96.0 0.0036 7.9E-08 68.2 2.6 43 646-694 304-346 (355)
63 KOG1814 Predicted E3 ubiquitin 95.7 0.0051 1.1E-07 68.1 2.1 47 647-693 184-238 (445)
64 PF05883 Baculo_RING: Baculovi 95.6 0.0052 1.1E-07 59.0 1.4 36 647-682 26-67 (134)
65 PF10367 Vps39_2: Vacuolar sor 95.3 0.0089 1.9E-07 53.3 1.7 33 645-678 76-108 (109)
66 PHA02825 LAP/PHD finger-like p 95.1 0.022 4.8E-07 56.2 4.0 48 643-694 4-58 (162)
67 COG5236 Uncharacterized conser 95.1 0.015 3.3E-07 63.2 3.0 51 641-694 55-107 (493)
68 PF04641 Rtf2: Rtf2 RING-finge 95.1 0.024 5.1E-07 59.7 4.3 52 644-696 110-162 (260)
69 PHA03096 p28-like protein; Pro 95.0 0.012 2.7E-07 62.9 2.0 44 648-691 179-230 (284)
70 KOG2034 Vacuolar sorting prote 94.9 0.012 2.6E-07 70.3 1.7 38 644-682 814-851 (911)
71 KOG3970 Predicted E3 ubiquitin 94.9 0.026 5.7E-07 58.4 3.9 52 645-697 48-107 (299)
72 COG5222 Uncharacterized conser 94.8 0.016 3.4E-07 62.0 2.3 42 648-692 275-318 (427)
73 PF14570 zf-RING_4: RING/Ubox 94.4 0.028 6.1E-07 45.3 2.2 45 650-694 1-47 (48)
74 KOG0801 Predicted E3 ubiquitin 94.1 0.015 3.2E-07 57.5 0.2 30 645-674 175-204 (205)
75 PF12906 RINGv: RING-variant d 94.1 0.029 6.4E-07 44.6 1.8 40 650-690 1-47 (47)
76 KOG1952 Transcription factor N 94.0 0.042 9E-07 65.6 3.6 50 645-694 189-246 (950)
77 KOG0827 Predicted E3 ubiquitin 94.0 0.0035 7.6E-08 68.8 -4.7 50 647-696 196-246 (465)
78 KOG2932 E3 ubiquitin ligase in 93.9 0.023 4.9E-07 61.2 1.1 46 647-696 90-135 (389)
79 PF14447 Prok-RING_4: Prokaryo 93.9 0.031 6.6E-07 46.2 1.5 48 646-698 6-53 (55)
80 PHA02862 5L protein; Provision 93.8 0.046 1E-06 53.3 2.8 46 647-694 2-52 (156)
81 KOG1001 Helicase-like transcri 93.7 0.029 6.3E-07 66.5 1.7 44 648-695 455-500 (674)
82 COG5183 SSM4 Protein involved 93.3 0.053 1.1E-06 64.3 2.8 50 645-695 10-66 (1175)
83 KOG0826 Predicted E3 ubiquitin 93.0 0.095 2.1E-06 56.9 3.9 48 645-694 298-345 (357)
84 KOG3268 Predicted E3 ubiquitin 92.7 0.077 1.7E-06 53.3 2.6 51 645-695 163-228 (234)
85 KOG1940 Zn-finger protein [Gen 92.5 0.049 1.1E-06 58.2 0.9 48 648-696 159-207 (276)
86 COG5175 MOT2 Transcriptional r 92.2 0.099 2.2E-06 57.0 2.9 52 645-696 12-65 (480)
87 PF10272 Tmpp129: Putative tra 92.2 0.27 5.8E-06 54.5 6.2 27 668-694 311-350 (358)
88 KOG0298 DEAD box-containing he 91.5 0.06 1.3E-06 66.7 0.3 44 647-692 1153-1196(1394)
89 KOG3002 Zn finger protein [Gen 91.2 0.13 2.9E-06 55.6 2.6 45 645-696 46-92 (299)
90 PF03854 zf-P11: P-11 zinc fin 90.6 0.11 2.5E-06 41.8 1.0 43 649-696 4-47 (50)
91 PF08746 zf-RING-like: RING-li 90.2 0.14 3.1E-06 40.1 1.3 41 650-690 1-43 (43)
92 KOG3161 Predicted E3 ubiquitin 90.2 0.095 2.1E-06 61.0 0.3 43 647-692 11-54 (861)
93 COG5220 TFB3 Cdk activating ki 89.0 0.21 4.4E-06 52.4 1.6 48 645-692 8-61 (314)
94 KOG1812 Predicted E3 ubiquitin 87.7 0.59 1.3E-05 52.2 4.4 40 645-684 144-184 (384)
95 PF05290 Baculo_IE-1: Baculovi 87.4 0.73 1.6E-05 44.6 4.1 53 646-698 79-135 (140)
96 KOG1100 Predicted E3 ubiquitin 86.1 0.34 7.4E-06 49.9 1.3 40 649-695 160-200 (207)
97 KOG4362 Transcriptional regula 86.1 0.2 4.2E-06 59.3 -0.5 47 646-695 20-69 (684)
98 KOG1609 Protein involved in mR 85.8 0.48 1E-05 49.9 2.3 49 647-695 78-134 (323)
99 KOG3053 Uncharacterized conser 85.5 0.39 8.4E-06 50.9 1.4 53 642-694 15-81 (293)
100 KOG0309 Conserved WD40 repeat- 85.4 0.44 9.5E-06 56.6 1.9 26 664-689 1044-1069(1081)
101 KOG0825 PHD Zn-finger protein 83.7 0.63 1.4E-05 55.6 2.2 50 646-695 95-154 (1134)
102 KOG2817 Predicted E3 ubiquitin 80.8 1.4 3E-05 49.3 3.3 50 647-696 334-386 (394)
103 PF07800 DUF1644: Protein of u 79.0 2.1 4.7E-05 42.6 3.6 36 647-682 2-47 (162)
104 KOG3039 Uncharacterized conser 77.8 1.5 3.2E-05 46.4 2.3 38 643-683 39-76 (303)
105 KOG1829 Uncharacterized conser 77.6 0.9 1.9E-05 53.2 0.7 43 646-691 510-557 (580)
106 KOG3899 Uncharacterized conser 76.8 1.4 3.1E-05 47.5 1.9 27 668-694 325-364 (381)
107 PF02891 zf-MIZ: MIZ/SP-RING z 75.7 2.4 5.3E-05 34.2 2.5 43 648-693 3-50 (50)
108 PF14446 Prok-RING_1: Prokaryo 71.8 5.2 0.00011 33.3 3.6 43 647-693 5-50 (54)
109 KOG1815 Predicted E3 ubiquitin 71.3 2.5 5.5E-05 47.9 2.3 38 645-684 68-105 (444)
110 KOG3579 Predicted E3 ubiquitin 71.0 2.2 4.7E-05 46.1 1.5 37 646-685 267-307 (352)
111 KOG0802 E3 ubiquitin ligase [P 66.6 2.6 5.6E-05 49.1 1.1 45 645-696 477-521 (543)
112 KOG2066 Vacuolar assembly/sort 65.5 2.6 5.6E-05 50.7 0.9 44 647-691 784-831 (846)
113 KOG0269 WD40 repeat-containing 64.4 4.7 0.0001 48.5 2.6 41 648-689 780-820 (839)
114 KOG2807 RNA polymerase II tran 64.1 7.8 0.00017 42.7 4.0 48 646-693 329-376 (378)
115 KOG2068 MOT2 transcription fac 63.2 5.7 0.00012 43.7 2.9 49 648-696 250-299 (327)
116 KOG4718 Non-SMC (structural ma 62.8 3.4 7.4E-05 42.9 1.0 43 647-691 181-223 (235)
117 KOG3005 GIY-YIG type nuclease 62.3 3.8 8.3E-05 43.9 1.3 48 648-695 183-243 (276)
118 smart00249 PHD PHD zinc finger 62.1 3.9 8.3E-05 30.4 1.0 32 649-680 1-32 (47)
119 KOG1812 Predicted E3 ubiquitin 61.4 4.2 9E-05 45.6 1.5 43 648-691 307-352 (384)
120 KOG2169 Zn-finger transcriptio 61.1 10 0.00022 45.4 4.6 46 647-696 306-357 (636)
121 KOG3113 Uncharacterized conser 57.0 10 0.00022 40.6 3.2 49 647-697 111-160 (293)
122 PF13901 DUF4206: Domain of un 55.3 8.3 0.00018 39.5 2.3 42 646-692 151-197 (202)
123 KOG0824 Predicted E3 ubiquitin 48.1 6 0.00013 43.1 0.0 50 643-695 101-151 (324)
124 PF07975 C1_4: TFIIH C1-like d 46.7 9.2 0.0002 31.5 0.9 42 650-691 2-50 (51)
125 KOG3842 Adaptor protein Pellin 45.5 18 0.00038 39.9 3.0 52 645-696 339-415 (429)
126 KOG3799 Rab3 effector RIM1 and 43.4 8.7 0.00019 37.6 0.3 45 643-693 61-116 (169)
127 TIGR00622 ssl1 transcription f 43.1 24 0.00053 33.4 3.2 46 647-692 55-111 (112)
128 PF04710 Pellino: Pellino; In 42.7 8.1 0.00018 43.5 0.0 28 664-694 305-338 (416)
129 KOG4185 Predicted E3 ubiquitin 40.7 5.5 0.00012 42.3 -1.7 48 646-693 206-265 (296)
130 PF05605 zf-Di19: Drought indu 40.1 13 0.00029 30.0 0.8 38 647-694 2-41 (54)
131 COG5109 Uncharacterized conser 39.9 20 0.00043 39.5 2.3 46 647-692 336-384 (396)
132 PF06906 DUF1272: Protein of u 38.2 50 0.0011 27.9 3.9 44 649-696 7-53 (57)
133 PLN02189 cellulose synthase 37.7 27 0.00058 43.9 3.2 50 646-695 33-87 (1040)
134 PF10235 Cript: Microtubule-as 35.8 21 0.00045 32.7 1.5 40 647-698 44-83 (90)
135 COG0068 HypF Hydrogenase matur 34.8 17 0.00036 43.9 0.9 48 646-693 100-182 (750)
136 PLN02436 cellulose synthase A 34.0 33 0.00071 43.3 3.2 50 646-695 35-89 (1094)
137 PF00628 PHD: PHD-finger; Int 33.5 16 0.00036 28.5 0.4 43 650-692 2-50 (51)
138 PF06844 DUF1244: Protein of u 32.1 27 0.00059 30.3 1.5 11 672-682 12-22 (68)
139 PF13717 zinc_ribbon_4: zinc-r 30.8 22 0.00048 26.9 0.7 25 649-673 4-36 (36)
140 PF04710 Pellino: Pellino; In 30.4 17 0.00037 41.1 0.0 49 647-695 328-401 (416)
141 PF14569 zf-UDP: Zinc-binding 30.2 49 0.0011 29.6 2.8 51 646-696 8-63 (80)
142 KOG1924 RhoA GTPase effector D 29.7 1.6E+02 0.0034 36.5 7.6 9 431-439 522-530 (1102)
143 KOG1814 Predicted E3 ubiquitin 29.6 32 0.0007 39.1 2.0 36 646-681 367-405 (445)
144 KOG2071 mRNA cleavage and poly 29.1 30 0.00065 40.9 1.7 36 645-680 511-556 (579)
145 PLN02248 cellulose synthase-li 28.5 75 0.0016 40.5 4.9 30 666-695 148-177 (1135)
146 PF04216 FdhE: Protein involve 27.7 6.1 0.00013 42.3 -3.9 47 647-693 172-220 (290)
147 KOG1245 Chromatin remodeling c 27.6 22 0.00048 46.2 0.3 53 642-694 1103-1159(1404)
148 KOG2979 Protein involved in DN 27.6 33 0.00071 36.9 1.5 42 647-690 176-219 (262)
149 PF02318 FYVE_2: FYVE-type zin 27.3 67 0.0014 30.1 3.4 46 646-692 53-102 (118)
150 PLN02638 cellulose synthase A 25.9 58 0.0013 41.3 3.4 50 646-695 16-70 (1079)
151 KOG1729 FYVE finger containing 25.9 15 0.00032 40.0 -1.4 40 645-684 212-251 (288)
152 PF06750 DiS_P_DiS: Bacterial 25.4 68 0.0015 29.1 3.0 39 646-696 32-70 (92)
153 PF07649 C1_3: C1-like domain; 25.1 44 0.00095 23.9 1.4 29 649-677 2-30 (30)
154 PF01363 FYVE: FYVE zinc finge 25.0 28 0.0006 29.1 0.4 37 645-681 7-44 (69)
155 COG5151 SSL1 RNA polymerase II 24.9 64 0.0014 35.7 3.1 52 642-693 357-419 (421)
156 PF07191 zinc-ribbons_6: zinc- 24.7 5.8 0.00013 34.6 -3.8 40 648-695 2-41 (70)
157 KOG3842 Adaptor protein Pellin 24.2 38 0.00082 37.5 1.3 29 663-694 317-351 (429)
158 smart00064 FYVE Protein presen 23.6 66 0.0014 26.7 2.4 37 646-682 9-46 (68)
159 smart00132 LIM Zinc-binding do 23.5 64 0.0014 23.0 2.0 38 649-695 1-38 (39)
160 PLN02915 cellulose synthase A 23.2 67 0.0015 40.6 3.3 51 645-695 13-68 (1044)
161 PF10146 zf-C4H2: Zinc finger- 23.2 49 0.0011 34.9 1.8 22 672-693 196-217 (230)
162 PF13719 zinc_ribbon_5: zinc-r 23.0 38 0.00082 25.7 0.7 25 649-673 4-36 (37)
163 PF10497 zf-4CXXC_R1: Zinc-fin 23.0 78 0.0017 29.5 2.9 24 669-692 37-69 (105)
164 PLN02400 cellulose synthase 22.8 54 0.0012 41.6 2.4 50 646-695 35-89 (1085)
165 KOG3726 Uncharacterized conser 22.2 46 0.001 40.1 1.6 43 647-692 654-697 (717)
166 cd00065 FYVE FYVE domain; Zinc 22.2 58 0.0012 26.0 1.7 35 648-682 3-38 (57)
167 KOG0956 PHD finger protein AF1 21.9 22 0.00047 42.8 -1.1 48 647-694 117-181 (900)
168 KOG2789 Putative Zn-finger pro 21.4 34 0.00074 38.8 0.3 33 647-680 74-106 (482)
169 PRK04023 DNA polymerase II lar 20.8 57 0.0012 41.1 2.0 49 645-698 624-677 (1121)
170 KOG1356 Putative transcription 20.8 26 0.00057 42.9 -0.8 36 645-681 227-262 (889)
171 KOG4218 Nuclear hormone recept 20.6 83 0.0018 35.3 2.9 47 645-692 13-75 (475)
172 PTZ00303 phosphatidylinositol 20.2 66 0.0014 39.5 2.3 34 648-681 461-500 (1374)
173 COG3813 Uncharacterized protei 20.2 1.1E+02 0.0025 27.1 3.2 44 650-695 8-52 (84)
174 TIGR00143 hypF [NiFe] hydrogen 20.1 46 0.001 40.5 1.1 49 646-694 67-150 (711)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.4e-13 Score=147.67 Aligned_cols=68 Identities=32% Similarity=0.853 Sum_probs=53.4
Q ss_pred HhhhhcccccccCCCCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCC-CCCCCCCCcCCCC
Q 005385 630 NRLKQQKYSISLGSQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN-LCPICKTTALSTS 698 (699)
Q Consensus 630 k~L~~~k~~~~~~s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~-sCPiCR~~Ll~tS 698 (699)
+.++...|+...+.... ..|+||+|+|+.++++++|||+|.||..||++||.... .||+||+.+...+
T Consensus 213 ~~~p~~~f~~~~~~~~~-~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 213 KKLPVRTFTKGDDEDAT-DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred hhCCcEEeccccccCCC-ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 34455555532222222 68999999999999999999999999999999998764 5999999887653
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.33 E-value=4.4e-13 Score=103.34 Aligned_cols=44 Identities=55% Similarity=1.237 Sum_probs=40.3
Q ss_pred CcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCC
Q 005385 648 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 691 (699)
Q Consensus 648 e~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR 691 (699)
+.|+||+++|..++.+..++|+|.||.+||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 46999999999888899999999999999999999999999997
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4e-11 Score=125.48 Aligned_cols=51 Identities=31% Similarity=0.911 Sum_probs=47.6
Q ss_pred CCCcccccccccCCCCceEEeccCCcccHHHHHHHHh-cCCCCCCCCCCcCC
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-HKNLCPICKTTALS 696 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~-~k~sCPiCR~~Ll~ 696 (699)
..-+|+||+++|...+++++|||.|.||..||.+|+. .++.||+||+++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3478999999999999999999999999999999998 89999999999986
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.10 E-value=4.5e-11 Score=102.40 Aligned_cols=48 Identities=40% Similarity=0.899 Sum_probs=38.0
Q ss_pred CCCCCcccccccccCCC----------CceEEeccCCcccHHHHHHHHhcCCCCCCCC
Q 005385 644 QQEQEPCCICQEEYNDG----------EDTGILHCGHDFHTSCIKQWLMHKNLCPICK 691 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~----------e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR 691 (699)
...++.|+||++.|.+. ..+...+|||.||..||.+||+.+.+||+||
T Consensus 16 ~~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 16 DIADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SSCCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCcCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 34456699999999443 2344568999999999999999999999998
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.02 E-value=2.2e-10 Score=118.17 Aligned_cols=51 Identities=35% Similarity=0.791 Sum_probs=42.2
Q ss_pred CCCCcccccccccCCCCc----e-EEeccCCcccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 645 QEQEPCCICQEEYNDGED----T-GILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~----v-~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
..+.+|+||++.+.+++. + ..++|+|.||..||.+|++.+.+||+||+.+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 346889999999876531 2 34479999999999999999999999999765
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.1e-10 Score=122.66 Aligned_cols=51 Identities=33% Similarity=0.897 Sum_probs=43.6
Q ss_pred CCCCCcccccccc-cCCC---------CceEEeccCCcccHHHHHHHHhcCCCCCCCCCCc
Q 005385 644 QQEQEPCCICQEE-YNDG---------EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 694 (699)
Q Consensus 644 ~e~de~C~ICLEe-f~~~---------e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~L 694 (699)
..++..|.||+++ |..+ ...++|||||+||.+|++.|++++.+||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 4567899999999 4433 1356899999999999999999999999999994
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=4.6e-10 Score=117.32 Aligned_cols=52 Identities=29% Similarity=0.710 Sum_probs=46.5
Q ss_pred CCCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 697 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~t 697 (699)
..+....|.||+|...++. .+||||+||..||..|+..+..||+||....+.
T Consensus 235 i~~a~~kC~LCLe~~~~pS---aTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPS---ATPCGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCCCceEEEecCCCCCC---cCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 3455678999999988887 999999999999999999999999999988764
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.86 E-value=1.7e-09 Score=108.28 Aligned_cols=49 Identities=31% Similarity=0.735 Sum_probs=41.0
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhc----------------CCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----------------KNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~----------------k~sCPiCR~~Ll~ 696 (699)
.++..|+||++.+.++. +++|||.||..||.+|+.. +..||+||+.+..
T Consensus 16 ~~~~~CpICld~~~dPV---vT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVRDPV---VTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCCCcE---EcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 35678999999987765 7899999999999999852 2469999998854
No 9
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.3e-09 Score=105.51 Aligned_cols=53 Identities=28% Similarity=0.595 Sum_probs=44.2
Q ss_pred CCCCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 642 GSQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 642 ~s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
...+....|+|||+.+.+.. ...++|||+||..||+..++....||+|++.|.
T Consensus 126 ~~~~~~~~CPiCl~~~sek~-~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 126 LRKEGTYKCPICLDSVSEKV-PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred cccccccCCCceecchhhcc-ccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 34455678999999987654 245799999999999999999999999998664
No 10
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.9e-09 Score=108.59 Aligned_cols=51 Identities=31% Similarity=0.679 Sum_probs=42.8
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcC---CCCCCCCCCcCCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK---NLCPICKTTALST 697 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k---~sCPiCR~~Ll~t 697 (699)
.....+|.|||+.-++++ ++.|||+||+-||.+||..+ +.||+||..+..+
T Consensus 44 ~~~~FdCNICLd~akdPV---vTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPV---VTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeeccccCCCE---EeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 345678999999987776 88999999999999999843 4599999988654
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.76 E-value=3.7e-09 Score=83.74 Aligned_cols=46 Identities=39% Similarity=0.808 Sum_probs=39.0
Q ss_pred CCcccccccccCCCCceEEeccCCc-ccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHi-FH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
+..|.||++...+ +..+||||. ||..|+.+|++.+..||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4679999998654 558899999 999999999999999999999875
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.74 E-value=8.5e-09 Score=76.92 Aligned_cols=44 Identities=48% Similarity=1.100 Sum_probs=36.2
Q ss_pred cccccccccCCCCceEEeccCCcccHHHHHHHHhc-CCCCCCCCCCc
Q 005385 649 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICKTTA 694 (699)
Q Consensus 649 ~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~-k~sCPiCR~~L 694 (699)
.|+||++.+.. .+..++|+|.||..|++.|++. ...||+||+.+
T Consensus 1 ~C~iC~~~~~~--~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE--PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC--ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 49999999832 3344569999999999999997 67799999864
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.73 E-value=4.9e-09 Score=79.14 Aligned_cols=39 Identities=38% Similarity=0.994 Sum_probs=33.2
Q ss_pred ccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCC
Q 005385 650 CCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPIC 690 (699)
Q Consensus 650 C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiC 690 (699)
|+||++.+.++ +..++|||.||..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~~--~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP--VVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE--EEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc--CEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998774 2578999999999999999998899998
No 14
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=8.3e-09 Score=117.72 Aligned_cols=51 Identities=39% Similarity=0.948 Sum_probs=44.6
Q ss_pred CCCCcccccccccCCCCc--eEEeccCCcccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 645 QEQEPCCICQEEYNDGED--TGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~--v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
..++.|+||+|++..+.. ..+|+|+|+||..|++.|++++.+||+||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 447899999999988644 568999999999999999999999999998443
No 15
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.64 E-value=2.7e-08 Score=81.19 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=41.3
Q ss_pred CcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 648 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 648 e~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
..|+||++.+.++. .++|||+||+.||.+|++.+..||+|++.+..
T Consensus 2 ~~Cpi~~~~~~~Pv---~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPV---ILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCE---ECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 46999999998875 78999999999999999998899999998743
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.61 E-value=2.4e-08 Score=101.66 Aligned_cols=51 Identities=33% Similarity=0.763 Sum_probs=39.0
Q ss_pred CCCCcccccccccCCC-----CceEEe-ccCCcccHHHHHHHHhcC------CCCCCCCCCcC
Q 005385 645 QEQEPCCICQEEYNDG-----EDTGIL-HCGHDFHTSCIKQWLMHK------NLCPICKTTAL 695 (699)
Q Consensus 645 e~de~C~ICLEef~~~-----e~v~iL-PCGHiFH~~CIkqWL~~k------~sCPiCR~~Ll 695 (699)
..+.+|+||+|..-++ ...++| +|+|.||..||++|...+ ..||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4568899999986432 123455 799999999999999853 35999998764
No 17
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.60 E-value=2.3e-08 Score=77.34 Aligned_cols=38 Identities=37% Similarity=0.871 Sum_probs=30.4
Q ss_pred ccccccccCCCCceEEeccCCcccHHHHHHHHhcC----CCCCCC
Q 005385 650 CCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK----NLCPIC 690 (699)
Q Consensus 650 C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k----~sCPiC 690 (699)
|+||++.|.++. .|+|||.||..||.+|++.. ..||+|
T Consensus 1 CpiC~~~~~~Pv---~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPV---SLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEE---E-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCcc---ccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999887 89999999999999999844 359998
No 18
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.58 E-value=4.2e-08 Score=86.71 Aligned_cols=50 Identities=32% Similarity=0.856 Sum_probs=39.1
Q ss_pred CCCcccccccccCC--------CC--ceEEeccCCcccHHHHHHHHhc---CCCCCCCCCCcC
Q 005385 646 EQEPCCICQEEYND--------GE--DTGILHCGHDFHTSCIKQWLMH---KNLCPICKTTAL 695 (699)
Q Consensus 646 ~de~C~ICLEef~~--------~e--~v~iLPCGHiFH~~CIkqWL~~---k~sCPiCR~~Ll 695 (699)
.++.|.||+..|.. ++ .+..-.|+|.||..||.+||.. +..||+||++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 47889999999872 11 2333479999999999999985 467999998753
No 19
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.57 E-value=4.4e-08 Score=75.97 Aligned_cols=44 Identities=34% Similarity=0.832 Sum_probs=38.1
Q ss_pred cccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCC
Q 005385 649 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 692 (699)
Q Consensus 649 ~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~ 692 (699)
.|.||++.|.......+++|||+||..||.++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999955556788899999999999999866678999985
No 20
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.53 E-value=5.3e-08 Score=107.21 Aligned_cols=50 Identities=24% Similarity=0.685 Sum_probs=44.1
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
.+....|.||++.|..+. +++|||.||..||..|+..+..||+||..+..
T Consensus 23 Le~~l~C~IC~d~~~~Pv---itpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPV---LTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhhCcc---CCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 355678999999998876 78999999999999999988889999998754
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.51 E-value=5.5e-08 Score=73.53 Aligned_cols=39 Identities=41% Similarity=1.083 Sum_probs=33.8
Q ss_pred ccccccccCCCCceEEeccCCcccHHHHHHHHh--cCCCCCCC
Q 005385 650 CCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM--HKNLCPIC 690 (699)
Q Consensus 650 C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~--~k~sCPiC 690 (699)
|+||++.+.++. ..++|||.||..||++|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987665 5779999999999999999 45569998
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.47 E-value=1.3e-07 Score=67.99 Aligned_cols=38 Identities=55% Similarity=1.253 Sum_probs=32.4
Q ss_pred ccccccccCCCCceEEeccCCcccHHHHHHHHh-cCCCCCCC
Q 005385 650 CCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-HKNLCPIC 690 (699)
Q Consensus 650 C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~-~k~sCPiC 690 (699)
|+||++.. .....++|+|.||..|++.|+. .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999884 3455889999999999999998 66679998
No 23
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.4e-07 Score=96.27 Aligned_cols=50 Identities=30% Similarity=0.681 Sum_probs=42.8
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHH-HHhcCCC-CCCCCCCcCCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQ-WLMHKNL-CPICKTTALST 697 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkq-WL~~k~s-CPiCR~~Ll~t 697 (699)
..+..|.||++....+. .++|||+||..||.. |-..+.. ||+||+...+.
T Consensus 213 ~~d~kC~lC~e~~~~ps---~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVPS---CTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCcc---cccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 55788999999977766 999999999999999 8877766 99999977653
No 24
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.30 E-value=5.4e-07 Score=78.57 Aligned_cols=49 Identities=33% Similarity=0.800 Sum_probs=36.8
Q ss_pred CCCcccccccccC-----------CCCceEE--eccCCcccHHHHHHHHhcCCCCCCCCCCc
Q 005385 646 EQEPCCICQEEYN-----------DGEDTGI--LHCGHDFHTSCIKQWLMHKNLCPICKTTA 694 (699)
Q Consensus 646 ~de~C~ICLEef~-----------~~e~v~i--LPCGHiFH~~CIkqWL~~k~sCPiCR~~L 694 (699)
.-+.|+||...|. .+++..+ -.|.|.||..||.+||..++.||+||++.
T Consensus 19 ~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 19 PIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred ccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 3456666666553 2333322 37999999999999999999999999874
No 25
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.8e-07 Score=101.02 Aligned_cols=47 Identities=34% Similarity=0.615 Sum_probs=39.5
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHhcC-----CCCCCCCCCcCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK-----NLCPICKTTALS 696 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k-----~sCPiCR~~Ll~ 696 (699)
+..|+||++....+. .+.|||+||..||.+++... ..||+|+..|..
T Consensus 186 ~~~CPICL~~~~~p~---~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPV---RTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCccc---ccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 678999999977776 67799999999999998754 349999987754
No 26
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.22 E-value=4e-07 Score=97.20 Aligned_cols=49 Identities=35% Similarity=0.686 Sum_probs=43.9
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
+....|-||.|.|..+. ++||+|.||.-||+.+|..+..||.|+.++..
T Consensus 21 D~lLRC~IC~eyf~ip~---itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPM---ITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHHhHHHHHhcCce---eccccchHHHHHHHHHhccCCCCCceecccch
Confidence 34567999999999888 89999999999999999999999999987653
No 27
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.1e-07 Score=99.44 Aligned_cols=52 Identities=27% Similarity=0.701 Sum_probs=41.6
Q ss_pred CCCCcccccccccCCCC--------------ceEEeccCCcccHHHHHHHHh-cCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGE--------------DTGILHCGHDFHTSCIKQWLM-HKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e--------------~v~iLPCGHiFH~~CIkqWL~-~k~sCPiCR~~Ll~ 696 (699)
.....|+||+.++..-. ....+||.|+||..|+++|+. .|-.||+||.++++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 45668999999875211 133569999999999999999 66689999999876
No 28
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.17 E-value=7.5e-07 Score=93.52 Aligned_cols=47 Identities=28% Similarity=0.670 Sum_probs=42.4
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCc
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 694 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~L 694 (699)
+....|-||-+.|..+. .++|||.||.-||+..|..+..||+||.+.
T Consensus 23 Ds~lrC~IC~~~i~ip~---~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 23 DSMLRCRICDCRISIPC---ETTCGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred hhHHHhhhhhheeecce---ecccccchhHHHHHHHhcCCCCCccccccH
Confidence 44567999999998887 889999999999999999999999999864
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.15 E-value=1.6e-06 Score=67.70 Aligned_cols=38 Identities=34% Similarity=0.832 Sum_probs=22.7
Q ss_pred ccccccccCCCC-ceEEeccCCcccHHHHHHHHhcC----CCCC
Q 005385 650 CCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLMHK----NLCP 688 (699)
Q Consensus 650 C~ICLEef~~~e-~v~iLPCGHiFH~~CIkqWL~~k----~sCP 688 (699)
|+||.| |.+.+ ...+|+|||+||++||++++... ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 86644 34678999999999999999843 3476
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.14 E-value=1.1e-06 Score=75.25 Aligned_cols=48 Identities=27% Similarity=0.456 Sum_probs=38.4
Q ss_pred CCCcccccccccCCCCceEEeccCCcccHHHHHHHHhc-CCCCCCCCCCcCC
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICKTTALS 696 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~-k~sCPiCR~~Ll~ 696 (699)
+...|+||.+.+.++. +++|||+|.+.||.+||+. ...||+|+..+..
T Consensus 3 ~~f~CpIt~~lM~dPV---i~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPV---ILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEE---EETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCce---eCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 3467999999999888 8999999999999999998 7889999988764
No 31
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.4e-06 Score=86.63 Aligned_cols=45 Identities=33% Similarity=0.812 Sum_probs=39.7
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 692 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~ 692 (699)
.+...|+||++.|..+ .+++|+|.||..||..++.....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4567899999999999 48999999999999999985567999994
No 32
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.4e-06 Score=79.31 Aligned_cols=55 Identities=29% Similarity=0.713 Sum_probs=41.0
Q ss_pred cccCCCCCCCcccccccccCC------------CCceEEe--ccCCcccHHHHHHHHhcCCCCCCCCCC
Q 005385 639 ISLGSQQEQEPCCICQEEYND------------GEDTGIL--HCGHDFHTSCIKQWLMHKNLCPICKTT 693 (699)
Q Consensus 639 ~~~~s~e~de~C~ICLEef~~------------~e~v~iL--PCGHiFH~~CIkqWL~~k~sCPiCR~~ 693 (699)
.........+.|+||...+-+ .++..+. .|.|.||..||.+||+.++.||+|.++
T Consensus 38 AlWaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 38 ALWAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eeeeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 344556667789988765421 2233333 799999999999999999999999875
No 33
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.1e-06 Score=91.50 Aligned_cols=51 Identities=31% Similarity=0.760 Sum_probs=42.4
Q ss_pred CCCCcccccccccCCCC-------ceEEeccCCcccHHHHHHHHh--cCCCCCCCCCCcC
Q 005385 645 QEQEPCCICQEEYNDGE-------DTGILHCGHDFHTSCIKQWLM--HKNLCPICKTTAL 695 (699)
Q Consensus 645 e~de~C~ICLEef~~~e-------~v~iLPCGHiFH~~CIkqWL~--~k~sCPiCR~~Ll 695 (699)
.++..|+||-..+...+ +.-.|.|+|.||..||+.|.. .|.+||.||+.+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 45678999998886655 566789999999999999976 6678999998764
No 34
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2e-06 Score=74.60 Aligned_cols=52 Identities=35% Similarity=0.876 Sum_probs=38.7
Q ss_pred CCCCCCcccccccccCC--------CCceE-Ee-ccCCcccHHHHHHHHhc---CCCCCCCCCCc
Q 005385 643 SQQEQEPCCICQEEYND--------GEDTG-IL-HCGHDFHTSCIKQWLMH---KNLCPICKTTA 694 (699)
Q Consensus 643 s~e~de~C~ICLEef~~--------~e~v~-iL-PCGHiFH~~CIkqWL~~---k~sCPiCR~~L 694 (699)
....++.|.||...|.. +++.- ++ .|.|.||..||.+|+.. +..||+||++.
T Consensus 16 W~~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 16 WDAPDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred EcCCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 34556799999999863 22221 22 69999999999999974 44699999874
No 35
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.89 E-value=1.2e-05 Score=64.30 Aligned_cols=42 Identities=31% Similarity=0.820 Sum_probs=33.0
Q ss_pred cccccccccCCCCceEEeccC-----CcccHHHHHHHHhcC--CCCCCCC
Q 005385 649 PCCICQEEYNDGEDTGILHCG-----HDFHTSCIKQWLMHK--NLCPICK 691 (699)
Q Consensus 649 ~C~ICLEef~~~e~v~iLPCG-----HiFH~~CIkqWL~~k--~sCPiCR 691 (699)
.|.||++ ..++++..++||. |.||..|+++|+..+ ..||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4999999 3444455577886 889999999999754 4799996
No 36
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.84 E-value=4.3e-06 Score=98.13 Aligned_cols=51 Identities=25% Similarity=0.757 Sum_probs=39.5
Q ss_pred CCCCcccccccccCCCC----ceEEeccCCcccHHHHHHHHhc--CCCCCCCCCCcC
Q 005385 645 QEQEPCCICQEEYNDGE----DTGILHCGHDFHTSCIKQWLMH--KNLCPICKTTAL 695 (699)
Q Consensus 645 e~de~C~ICLEef~~~e----~v~iLPCGHiFH~~CIkqWL~~--k~sCPiCR~~Ll 695 (699)
...++|+||+..+.--+ ..++..|+|.||..|+.+|++. ...||+||.++.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 56789999988765211 2345679999999999999994 457999998764
No 37
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=1.2e-05 Score=84.29 Aligned_cols=52 Identities=23% Similarity=0.474 Sum_probs=41.3
Q ss_pred CCCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcC--CCCCCCCCCcCC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK--NLCPICKTTALS 696 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k--~sCPiCR~~Ll~ 696 (699)
....+.+|++|.+.-..|. ...+|+|+||+.||..-+.-. .+||.|-.++.+
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~--~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPH--VIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cccCCceeeccCCCCCCCe--eeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 3456789999999877666 345799999999999877643 679999988763
No 38
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.71 E-value=6.2e-06 Score=70.45 Aligned_cols=50 Identities=32% Similarity=0.723 Sum_probs=23.7
Q ss_pred CCcccccccccC-CCCc--eEEe--ccCCcccHHHHHHHHhc--C-C--------CCCCCCCCcCC
Q 005385 647 QEPCCICQEEYN-DGED--TGIL--HCGHDFHTSCIKQWLMH--K-N--------LCPICKTTALS 696 (699)
Q Consensus 647 de~C~ICLEef~-~~e~--v~iL--PCGHiFH~~CIkqWL~~--k-~--------sCPiCR~~Ll~ 696 (699)
+.+|.||+..+. .+.. +..- .|++.||..||.+||.. + . .||.|+++|.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 467999999876 3322 2222 69999999999999972 1 1 39999998753
No 39
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=2.1e-05 Score=85.05 Aligned_cols=49 Identities=31% Similarity=0.674 Sum_probs=41.2
Q ss_pred CCCCcccccccccCCCCceEEeccCCc-ccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHi-FH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
+...+|.||+.+.++.. +|||.|+ .|..|.+...-+.+.||+||+++..
T Consensus 288 ~~gkeCVIClse~rdt~---vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTV---VLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceE---EecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 44678999998866554 9999999 8999999877678899999998754
No 40
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=2.3e-05 Score=64.22 Aligned_cols=47 Identities=28% Similarity=0.622 Sum_probs=37.3
Q ss_pred CCcccccccccCCCCceEEeccCCc-ccHHHHHHHHh-cCCCCCCCCCCcCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLM-HKNLCPICKTTALS 696 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHi-FH~~CIkqWL~-~k~sCPiCR~~Ll~ 696 (699)
+++|.||+|.-.+.. ...|||. +|++|-.+.++ .+..||+||+++.+
T Consensus 7 ~dECTICye~pvdsV---lYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVDSV---LYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcchHH---HHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 478999988754443 6689998 79999877666 78889999998753
No 41
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=1.5e-05 Score=85.90 Aligned_cols=50 Identities=30% Similarity=0.507 Sum_probs=39.9
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHh-cCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-HKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~-~k~sCPiCR~~Ll~ 696 (699)
..+..|+||++.++... ....|.|.||.+||..-|+ ..+.||.||+.+..
T Consensus 41 ~~~v~c~icl~llk~tm--ttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTM--TTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhhccHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 45678999999987554 2235999999999999988 46679999998754
No 42
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=4.5e-05 Score=83.05 Aligned_cols=50 Identities=34% Similarity=0.921 Sum_probs=38.9
Q ss_pred CCCCcccccccccCCCC----ceEEe-ccCCcccHHHHHHHHh--c-----CCCCCCCCCCc
Q 005385 645 QEQEPCCICQEEYNDGE----DTGIL-HCGHDFHTSCIKQWLM--H-----KNLCPICKTTA 694 (699)
Q Consensus 645 e~de~C~ICLEef~~~e----~v~iL-PCGHiFH~~CIkqWL~--~-----k~sCPiCR~~L 694 (699)
..+..|.||++...+.. ..++| +|.|.||..||++|-. + ...||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45788999999976554 13445 5999999999999984 3 35699999864
No 43
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.48 E-value=2.1e-05 Score=91.12 Aligned_cols=52 Identities=21% Similarity=0.461 Sum_probs=45.0
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
.....|+||+..+.+.......+|+|+||..||..|-+.-.+||+||..+..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 3456899999999887765667899999999999999999999999998754
No 44
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=3.7e-05 Score=89.61 Aligned_cols=48 Identities=27% Similarity=0.708 Sum_probs=39.4
Q ss_pred CCCcccccccccCCCCceEEeccCCcccHHHHHHHHh-cCCCCCCCCCCcCC
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-HKNLCPICKTTALS 696 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~-~k~sCPiCR~~Ll~ 696 (699)
....|+.|-..+++.. ++.|+|.||..||+.-+. ++..||.|.+.+-+
T Consensus 642 ~~LkCs~Cn~R~Kd~v---I~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAV---ITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCchhhHH---HHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3568999986655444 889999999999999998 56789999987754
No 45
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.42 E-value=5.6e-05 Score=80.14 Aligned_cols=56 Identities=20% Similarity=0.607 Sum_probs=45.1
Q ss_pred CCCCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHh-----------------------cCCCCCCCCCCcCCC
Q 005385 642 GSQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-----------------------HKNLCPICKTTALST 697 (699)
Q Consensus 642 ~s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~-----------------------~k~sCPiCR~~Ll~t 697 (699)
+.......|.||+--|.+.+...+++|-|.||..|+.++|. .+..||+||..|...
T Consensus 110 ~nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 110 ENNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred cCCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 34455678999999999999889999999999999988772 112499999987653
No 46
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00014 Score=80.67 Aligned_cols=49 Identities=24% Similarity=0.764 Sum_probs=43.6
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
..+..|.||+..+..+. .+||||.||..||.+-+.....||+||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv---~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPV---VTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCc---cccccccccHHHHHHHhccCCCCccccccccc
Confidence 56778999999998887 88999999999999988888889999998763
No 47
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.29 E-value=4.7e-05 Score=64.33 Aligned_cols=45 Identities=31% Similarity=0.671 Sum_probs=24.1
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
...|.+|.+.++++. ....|.|+||..||.+-+. ..||+|++++.
T Consensus 7 lLrCs~C~~~l~~pv--~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 7 LLRCSICFDILKEPV--CLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp TTS-SSS-S--SS-B-----SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred hcCCcHHHHHhcCCc--eeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 457999999998886 2347999999999988544 45999999874
No 48
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.16 E-value=0.00014 Score=79.57 Aligned_cols=47 Identities=38% Similarity=0.818 Sum_probs=38.6
Q ss_pred CcccccccccCCCCceEEeccCCcccHHHHHHHHhc--CCCCCCCCCCcCCC
Q 005385 648 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH--KNLCPICKTTALST 697 (699)
Q Consensus 648 e~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~--k~sCPiCR~~Ll~t 697 (699)
+.|-||-|. ..++++-||||+.|..|+..|-.. ...||.||.+|..+
T Consensus 370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 469999776 445668899999999999999753 46799999998754
No 49
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.05 E-value=0.00024 Score=78.84 Aligned_cols=50 Identities=28% Similarity=0.783 Sum_probs=39.3
Q ss_pred CCCCcccccccccCCCCc-eEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~-v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
.+.-.|+||+|-+..... +..+.|.|.||..|+.+|. ..+||+||....+
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~p 223 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQSP 223 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcCc
Confidence 445689999999876553 3344799999999999994 5679999986653
No 50
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.00 E-value=0.00041 Score=84.38 Aligned_cols=53 Identities=32% Similarity=0.619 Sum_probs=42.9
Q ss_pred CCCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCC----------CCCCCCCCcC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN----------LCPICKTTAL 695 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~----------sCPiCR~~Ll 695 (699)
..+.++.|.||+.+--.....+.|.|+|+||..|.+..|+++- .||+|+.+|.
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 3456788999988866666678899999999999999887553 3999998874
No 51
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0006 Score=73.81 Aligned_cols=49 Identities=33% Similarity=0.580 Sum_probs=41.6
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
.++..|+||+.. +...+..||+|.-|+.||.+.|...+.|=.||+++.+
T Consensus 420 sEd~lCpICyA~---pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecc---cchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 467789999655 4444578999999999999999999999999998764
No 52
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.73 E-value=0.00068 Score=75.22 Aligned_cols=50 Identities=28% Similarity=0.639 Sum_probs=43.8
Q ss_pred CCCCCcccccccccCCCCceEE-eccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGI-LHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~i-LPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
.+.+..|+||...+.++. . +.|||.||..||..|+..+..||.|+..+..
T Consensus 18 ~~~~l~C~~C~~vl~~p~---~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPV---QTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQ 68 (391)
T ss_pred CcccccCccccccccCCC---CCCCCCCcccccccchhhccCcCCcccccccch
Confidence 356688999999999888 4 5899999999999999999999999987653
No 53
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.73 E-value=0.00039 Score=74.78 Aligned_cols=49 Identities=29% Similarity=0.634 Sum_probs=41.7
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
.....|.+|...|.+.. .+.-|-|.||+.||.+.|+..+.||+|...+-
T Consensus 13 n~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih 61 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVIH 61 (331)
T ss_pred ccceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceecc
Confidence 45678999999998776 34469999999999999999999999987653
No 54
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.69 E-value=0.0013 Score=74.29 Aligned_cols=50 Identities=24% Similarity=0.613 Sum_probs=39.2
Q ss_pred CCCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHh-----cCCCCCCCCCCcC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-----HKNLCPICKTTAL 695 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~-----~k~sCPiCR~~Ll 695 (699)
.......|.+|.+.-++.. ...|.|.||+-||+.++. ..-+||.|-..+.
T Consensus 532 enk~~~~C~lc~d~aed~i---~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDYI---ESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cccCceeecccCChhhhhH---hhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 3445678999998865554 778999999999999986 3346999987654
No 55
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.65 E-value=0.0012 Score=54.64 Aligned_cols=43 Identities=26% Similarity=0.564 Sum_probs=28.8
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhc--CCCCCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH--KNLCPI 689 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~--k~sCPi 689 (699)
.....|+|.+..|+++. +...|+|+|-++.|.+||.. ...||+
T Consensus 9 ~~~~~CPiT~~~~~~PV--~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPV--KSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEE--EESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCc--CcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 44578999999998876 44589999999999999943 335998
No 56
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.57 E-value=0.00082 Score=67.99 Aligned_cols=44 Identities=25% Similarity=0.690 Sum_probs=39.7
Q ss_pred CcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCc
Q 005385 648 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 694 (699)
Q Consensus 648 e~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~L 694 (699)
..|.||-++|+.+. ++.|||.||..|...-++....|-+|-+..
T Consensus 197 F~C~iCKkdy~spv---vt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPV---VTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchh---hhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 47999999999988 889999999999999888888999998754
No 57
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.0017 Score=76.73 Aligned_cols=44 Identities=23% Similarity=0.647 Sum_probs=35.5
Q ss_pred CCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCc
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 694 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~L 694 (699)
....|.+|--.+..|. +...|||.||.+|+. .....||.|+.++
T Consensus 839 q~skCs~C~~~LdlP~--VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPF--VHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeeecccCCccccce--eeeecccHHHHHhhc---cCcccCCccchhh
Confidence 4468999998887776 456899999999998 4566799999743
No 58
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.45 E-value=0.00094 Score=73.16 Aligned_cols=48 Identities=29% Similarity=0.645 Sum_probs=39.3
Q ss_pred CCCcccccccccCCC-CceEEeccCCcccHHHHHHHHhcCC--CCCCCCCC
Q 005385 646 EQEPCCICQEEYNDG-EDTGILHCGHDFHTSCIKQWLMHKN--LCPICKTT 693 (699)
Q Consensus 646 ~de~C~ICLEef~~~-e~v~iLPCGHiFH~~CIkqWL~~k~--sCPiCR~~ 693 (699)
-+..|..|-|.|... +.+..|||.|+||..|+...|+.+. +||.||+-
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 356799999988654 4577889999999999999998554 59999953
No 59
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0012 Score=70.15 Aligned_cols=42 Identities=38% Similarity=0.811 Sum_probs=33.1
Q ss_pred CCcccccccccCCCCceEEeccCCc-ccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHi-FH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
+..|.||++. +.+...|+|||. -|.+|-+.. +.||+||+-+.
T Consensus 300 ~~LC~ICmDa---P~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLECGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcC---CcceEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence 6789999877 455669999997 588997663 37999998653
No 60
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0018 Score=69.01 Aligned_cols=47 Identities=21% Similarity=0.528 Sum_probs=41.5
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
...|-||...|..++ ++.|+|.||..|...-++....|.+|-+.+-.
T Consensus 241 Pf~c~icr~~f~~pV---vt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPV---VTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred Cccccccccccccch---hhcCCceeehhhhccccccCCcceeccccccc
Confidence 356999999999988 89999999999999998888899999886543
No 61
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.004 Score=64.94 Aligned_cols=51 Identities=12% Similarity=0.345 Sum_probs=46.0
Q ss_pred CCCcccccccccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 646 EQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iL-PCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
....|+||.+.+.+...+..| +|||+|+++|+++.+.....||+|-.++.+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence 346799999999999988888 899999999999999999999999988765
No 62
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0036 Score=68.21 Aligned_cols=43 Identities=26% Similarity=0.672 Sum_probs=31.5
Q ss_pred CCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCc
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 694 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~L 694 (699)
....|.||+++..+- ..+||||+-| |+.--. .-.+||+||+.|
T Consensus 304 ~p~lcVVcl~e~~~~---~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI 346 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSA---VFVPCGHVCC--CTLCSK-HLPQCPVCRQRI 346 (355)
T ss_pred CCCceEEecCCccce---eeecCCcEEE--chHHHh-hCCCCchhHHHH
Confidence 456799999997664 4889999977 664432 233499999865
No 63
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.0051 Score=68.09 Aligned_cols=47 Identities=34% Similarity=0.602 Sum_probs=37.5
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHhcC--------CCCCCCCCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK--------NLCPICKTT 693 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k--------~sCPiCR~~ 693 (699)
...|.||+++..-.+....+||+|+||+.|++.++... -.||-|+-.
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 45799999997766777889999999999999998622 248876643
No 64
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.61 E-value=0.0052 Score=59.01 Aligned_cols=36 Identities=22% Similarity=0.534 Sum_probs=29.3
Q ss_pred CCcccccccccCCCCceEEeccC------CcccHHHHHHHHh
Q 005385 647 QEPCCICQEEYNDGEDTGILHCG------HDFHTSCIKQWLM 682 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCG------HiFH~~CIkqWL~ 682 (699)
..+|.||++.+.+..-++.++|+ |.||.+|+++|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 56799999999884455666777 8899999999943
No 65
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.28 E-value=0.0089 Score=53.32 Aligned_cols=33 Identities=33% Similarity=0.746 Sum_probs=27.2
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHH
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIK 678 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIk 678 (699)
.++..|.||...+... ...+.||||+||..|++
T Consensus 76 ~~~~~C~vC~k~l~~~-~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNS-VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCc-eEEEeCCCeEEeccccc
Confidence 4567799999998773 46677999999999986
No 66
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.10 E-value=0.022 Score=56.20 Aligned_cols=48 Identities=25% Similarity=0.661 Sum_probs=35.3
Q ss_pred CCCCCCcccccccccCCCCceEEeccCC-----cccHHHHHHHHhcC--CCCCCCCCCc
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILHCGH-----DFHTSCIKQWLMHK--NLCPICKTTA 694 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLPCGH-----iFH~~CIkqWL~~k--~sCPiCR~~L 694 (699)
....+..|-||+++.. .. .-||.. .-|.+|+++|+..+ ..|++|+++.
T Consensus 4 ~s~~~~~CRIC~~~~~-~~---~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 4 VSLMDKCCWICKDEYD-VV---TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred cCCCCCeeEecCCCCC-Cc---cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 3456678999998853 22 346665 45999999999854 4599999865
No 67
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.08 E-value=0.015 Score=63.21 Aligned_cols=51 Identities=25% Similarity=0.618 Sum_probs=39.3
Q ss_pred cCCCCCCCcccccccccCCCCceEEeccCCcccHHHHHHH--HhcCCCCCCCCCCc
Q 005385 641 LGSQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQW--LMHKNLCPICKTTA 694 (699)
Q Consensus 641 ~~s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqW--L~~k~sCPiCR~~L 694 (699)
.+..++.+.|.||-+.+. ...++||+|..|--|..+. |-.++.||+||++-
T Consensus 55 ddtDEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 55 DDTDEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 345566788999988754 3347899999999998664 44778899999864
No 68
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.05 E-value=0.024 Score=59.73 Aligned_cols=52 Identities=21% Similarity=0.458 Sum_probs=41.0
Q ss_pred CCCCCcccccccccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iL-PCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
......|+|+..+|......+.+ +|||+|.+.||++.- ....||+|-+++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCcccc
Confidence 34567899999999666655555 999999999999972 34579999988654
No 69
>PHA03096 p28-like protein; Provisional
Probab=94.96 E-value=0.012 Score=62.91 Aligned_cols=44 Identities=32% Similarity=0.608 Sum_probs=31.8
Q ss_pred CcccccccccCCCC----ceEEe-ccCCcccHHHHHHHHhcC---CCCCCCC
Q 005385 648 EPCCICQEEYNDGE----DTGIL-HCGHDFHTSCIKQWLMHK---NLCPICK 691 (699)
Q Consensus 648 e~C~ICLEef~~~e----~v~iL-PCGHiFH~~CIkqWL~~k---~sCPiCR 691 (699)
..|.||++...... ..+.| .|.|.||..||+.|...+ .+||.||
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 67999999876432 34556 599999999999998633 2344444
No 70
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=0.012 Score=70.32 Aligned_cols=38 Identities=24% Similarity=0.551 Sum_probs=29.7
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHh
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM 682 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~ 682 (699)
.+..+.|.||...+-.. ...+.+|||.||++||.+...
T Consensus 814 ~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcC-cceeeeccchHHHHHHHHHHH
Confidence 35678899998887544 344669999999999988763
No 71
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.026 Score=58.38 Aligned_cols=52 Identities=25% Similarity=0.593 Sum_probs=41.3
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhc--------CCCCCCCCCCcCCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH--------KNLCPICKTTALST 697 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~--------k~sCPiCR~~Ll~t 697 (699)
+..-.|..|-..+..++ ...|-|-|+||.+|+..|-.. ...||.|..+|.+.
T Consensus 48 DY~pNC~LC~t~La~gd-t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGD-TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCCCCceeCCccccCc-ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 34567999999888877 456789999999999999752 23499999998763
No 72
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.84 E-value=0.016 Score=62.02 Aligned_cols=42 Identities=29% Similarity=0.631 Sum_probs=35.5
Q ss_pred CcccccccccCCCCceEEec-cCCcccHHHHHHHHh-cCCCCCCCCC
Q 005385 648 EPCCICQEEYNDGEDTGILH-CGHDFHTSCIKQWLM-HKNLCPICKT 692 (699)
Q Consensus 648 e~C~ICLEef~~~e~v~iLP-CGHiFH~~CIkqWL~-~k~sCPiCR~ 692 (699)
..|+.|..-+..+. .++ |+|.||.+||..-|. ....||.|-.
T Consensus 275 LkCplc~~Llrnp~---kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPM---KTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcc---cCccccchHHHHHHhhhhhhccccCCCccc
Confidence 67999999888877 554 999999999998776 5678999976
No 73
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.38 E-value=0.028 Score=45.29 Aligned_cols=45 Identities=27% Similarity=0.625 Sum_probs=23.0
Q ss_pred ccccccccCCCC-ceEEeccCCcccHHHHHHHHh-cCCCCCCCCCCc
Q 005385 650 CCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLM-HKNLCPICKTTA 694 (699)
Q Consensus 650 C~ICLEef~~~e-~v~iLPCGHiFH~~CIkqWL~-~k~sCPiCR~~L 694 (699)
|++|.+++...+ .+.--+||+.+|..|..+.++ ....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999984433 222236999999999999886 577899999864
No 74
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=0.015 Score=57.51 Aligned_cols=30 Identities=27% Similarity=0.656 Sum_probs=27.2
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccH
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHT 674 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~ 674 (699)
++..+|.||+|++..++.+..|||-.+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 455689999999999999999999999996
No 75
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.09 E-value=0.029 Score=44.58 Aligned_cols=40 Identities=35% Similarity=0.816 Sum_probs=26.9
Q ss_pred ccccccccCCCCceEEeccCC-----cccHHHHHHHHh--cCCCCCCC
Q 005385 650 CCICQEEYNDGEDTGILHCGH-----DFHTSCIKQWLM--HKNLCPIC 690 (699)
Q Consensus 650 C~ICLEef~~~e~v~iLPCGH-----iFH~~CIkqWL~--~k~sCPiC 690 (699)
|-||++.-.+.. ..+.||+- ..|.+|+++|+. .+..|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 789999866555 33457663 579999999998 44569988
No 76
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.02 E-value=0.042 Score=65.56 Aligned_cols=50 Identities=30% Similarity=0.711 Sum_probs=37.1
Q ss_pred CCCCcccccccccCCCCceEE-eccCCcccHHHHHHHHhcCC-------CCCCCCCCc
Q 005385 645 QEQEPCCICQEEYNDGEDTGI-LHCGHDFHTSCIKQWLMHKN-------LCPICKTTA 694 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~i-LPCGHiFH~~CIkqWL~~k~-------sCPiCR~~L 694 (699)
....+|.||++.+.....+.. ..|-|+||..||++|-+... .||.|....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 345679999999877664432 35889999999999986321 399999543
No 77
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.0035 Score=68.82 Aligned_cols=50 Identities=24% Similarity=0.567 Sum_probs=43.6
Q ss_pred CCcccccccccCCC-CceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 647 QEPCCICQEEYNDG-EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 647 de~C~ICLEef~~~-e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
...|+||.+.|+.. +++..+-|||.+|.+||.+||..+..||.|+.++.-
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 56799999999876 556677899999999999999999999999988753
No 78
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.023 Score=61.18 Aligned_cols=46 Identities=20% Similarity=0.508 Sum_probs=31.5
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
...|.-|--.+ ...-+..||+|+||++|... ...+.||.|-..+..
T Consensus 90 VHfCd~Cd~PI--~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 90 VHFCDRCDFPI--AIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQR 135 (389)
T ss_pred eEeecccCCcc--eeeecccccchhhhhhhhhc--CccccCcCcccHHHH
Confidence 34576674333 22224559999999999854 456789999877654
No 79
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.87 E-value=0.031 Score=46.23 Aligned_cols=48 Identities=29% Similarity=0.628 Sum_probs=36.2
Q ss_pred CCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCCCC
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTS 698 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~tS 698 (699)
....|..|...-..+. +++|||+.|..|..- ++-+-||+|-+++...+
T Consensus 6 ~~~~~~~~~~~~~~~~---~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGT---VLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred cceeEEEccccccccc---cccccceeeccccCh--hhccCCCCCCCcccCCC
Confidence 4556888876644444 889999999999765 46677999999887643
No 80
>PHA02862 5L protein; Provisional
Probab=93.76 E-value=0.046 Score=53.26 Aligned_cols=46 Identities=26% Similarity=0.728 Sum_probs=31.4
Q ss_pred CCcccccccccCCCCceEEecc---CCcccHHHHHHHHh--cCCCCCCCCCCc
Q 005385 647 QEPCCICQEEYNDGEDTGILHC---GHDFHTSCIKQWLM--HKNLCPICKTTA 694 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPC---GHiFH~~CIkqWL~--~k~sCPiCR~~L 694 (699)
.+.|-||+++-.+.. ..-.| -..-|.+|+.+|+. .+..|++|+.+.
T Consensus 2 ~diCWIC~~~~~e~~--~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 2 SDICWICNDVCDERN--NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CCEEEEecCcCCCCc--ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 357999999853321 10012 13589999999998 445699999875
No 81
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.75 E-value=0.029 Score=66.50 Aligned_cols=44 Identities=32% Similarity=0.760 Sum_probs=35.5
Q ss_pred CcccccccccCCCCceEEeccCCcccHHHHHHHHhcC--CCCCCCCCCcC
Q 005385 648 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK--NLCPICKTTAL 695 (699)
Q Consensus 648 e~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k--~sCPiCR~~Ll 695 (699)
..|.||++ .+...++.|+|.||..|+.+-+... ..||+||..+.
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 78999999 3445588999999999999998743 35999997543
No 82
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=93.29 E-value=0.053 Score=64.29 Aligned_cols=50 Identities=22% Similarity=0.610 Sum_probs=37.3
Q ss_pred CCCCcccccccccCCCCceEEeccCCc-----ccHHHHHHHHhc--CCCCCCCCCCcC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHD-----FHTSCIKQWLMH--KNLCPICKTTAL 695 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHi-----FH~~CIkqWL~~--k~sCPiCR~~Ll 695 (699)
+++..|.||..+-..++ .-.-||++. .|++|+.+|+.. +.+|-+|+.++.
T Consensus 10 ~d~~~CRICr~e~~~d~-pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIRDD-PLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCCCC-cCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 45588999998855444 223378764 899999999994 456999998764
No 83
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=0.095 Score=56.93 Aligned_cols=48 Identities=21% Similarity=0.474 Sum_probs=39.3
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCc
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 694 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~L 694 (699)
.+...|+||+....++. ++.--|-+||+.||.+.+...+.||+--.++
T Consensus 298 ~~~~~CpvClk~r~Npt--vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPT--VLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCc--eEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 45678999999987776 2335799999999999999999999876654
No 84
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=0.077 Score=53.35 Aligned_cols=51 Identities=31% Similarity=0.717 Sum_probs=35.6
Q ss_pred CCCCcccccccccCCCCc----eEEeccCCcccHHHHHHHHhcC-----------CCCCCCCCCcC
Q 005385 645 QEQEPCCICQEEYNDGED----TGILHCGHDFHTSCIKQWLMHK-----------NLCPICKTTAL 695 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~----v~iLPCGHiFH~~CIkqWL~~k-----------~sCPiCR~~Ll 695 (699)
+....|.||+..--++.. +--..||.-||.-|+..||+.- ..||.|-.++.
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 344568888765444331 1124799999999999999721 13999999875
No 85
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.45 E-value=0.049 Score=58.17 Aligned_cols=48 Identities=33% Similarity=0.728 Sum_probs=39.5
Q ss_pred CcccccccccCCCC-ceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 648 EPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 648 e~C~ICLEef~~~e-~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
..|+||.+.+.... .+..++|||..|..|........-.||+|.+ +.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d 207 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGD 207 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHH
Confidence 34999999987655 4567899999999999998887788999998 443
No 86
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.23 E-value=0.099 Score=56.96 Aligned_cols=52 Identities=19% Similarity=0.400 Sum_probs=36.0
Q ss_pred CCCCcccccccccCCCCc-eEEeccCCcccHHHHHHHHh-cCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQWLM-HKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~-v~iLPCGHiFH~~CIkqWL~-~k~sCPiCR~~Ll~ 696 (699)
++++.|+.|+|++...++ ..-.+||-..|.-|....-+ ....||.||....+
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 344559999999987664 33447997777777554333 45679999987654
No 87
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.18 E-value=0.27 Score=54.49 Aligned_cols=27 Identities=22% Similarity=0.827 Sum_probs=20.6
Q ss_pred cCCcccHHHHHHHHhcC-------------CCCCCCCCCc
Q 005385 668 CGHDFHTSCIKQWLMHK-------------NLCPICKTTA 694 (699)
Q Consensus 668 CGHiFH~~CIkqWL~~k-------------~sCPiCR~~L 694 (699)
|.-..|.+|+-+|+..+ -.||+||+..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 44567999999999632 2499999974
No 88
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.51 E-value=0.06 Score=66.71 Aligned_cols=44 Identities=36% Similarity=0.835 Sum_probs=37.8
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 692 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~ 692 (699)
...|.||++.+..-. .+..|||.||..|+..|+..+..||+|+.
T Consensus 1153 ~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred ccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 447999999987332 37789999999999999999999999984
No 89
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=91.24 E-value=0.13 Score=55.58 Aligned_cols=45 Identities=24% Similarity=0.547 Sum_probs=36.4
Q ss_pred CCCCcccccccccCCCCceEEecc--CCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHC--GHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPC--GHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
.+-.+|+||.+.+..+. ..| ||+-|..|-.+ ..+.||.||.++..
T Consensus 46 ~~lleCPvC~~~l~~Pi----~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPI----FQCDNGHLACSSCRTK---VSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCcccc----eecCCCcEehhhhhhh---hcccCCcccccccc
Confidence 34568999999988775 677 69999999753 57789999998864
No 90
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=90.64 E-value=0.11 Score=41.82 Aligned_cols=43 Identities=23% Similarity=0.685 Sum_probs=26.2
Q ss_pred cccccccccCCCCceEEeccC-CcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 649 PCCICQEEYNDGEDTGILHCG-HDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 649 ~C~ICLEef~~~e~v~iLPCG-HiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
.|--|. |.+.. ...|. |..|..|+...|.....||+|+.+++.
T Consensus 4 nCKsCW--f~~k~---Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCW--FANKG---LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS---S--SS---EEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhh--hcCCC---eeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 355554 33333 56787 999999999999999999999998875
No 91
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=90.25 E-value=0.14 Score=40.08 Aligned_cols=41 Identities=29% Similarity=0.814 Sum_probs=24.1
Q ss_pred ccccccccCCCCceEEeccCCcccHHHHHHHHhcCC--CCCCC
Q 005385 650 CCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN--LCPIC 690 (699)
Q Consensus 650 C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~--sCPiC 690 (699)
|.+|.+....+.......|+=.+|..|++.+++.+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 778888877766333335888999999999998665 69988
No 92
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=0.095 Score=61.02 Aligned_cols=43 Identities=26% Similarity=0.560 Sum_probs=32.1
Q ss_pred CCcccccccccCCCC-ceEEeccCCcccHHHHHHHHhcCCCCCCCCC
Q 005385 647 QEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLMHKNLCPICKT 692 (699)
Q Consensus 647 de~C~ICLEef~~~e-~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~ 692 (699)
-..|.||+..|.... ..+.+.|||+.|.+|+.... +.+|| |+.
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 457999988876544 34577899999999998754 55677 654
No 93
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=88.97 E-value=0.21 Score=52.45 Aligned_cols=48 Identities=27% Similarity=0.603 Sum_probs=35.2
Q ss_pred CCCCcccccccccCCCCceEEe--c-cCCcccHHHHHHHHhcC-CCCC--CCCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGIL--H-CGHDFHTSCIKQWLMHK-NLCP--ICKT 692 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iL--P-CGHiFH~~CIkqWL~~k-~sCP--iCR~ 692 (699)
..+..|+||..+.--..++..| | |-|.+|..|+++.+... ..|| -|.+
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 3456899999875433334444 6 99999999999999855 4699 6754
No 94
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.75 E-value=0.59 Score=52.25 Aligned_cols=40 Identities=38% Similarity=0.704 Sum_probs=30.2
Q ss_pred CCCCcccccccccCCCC-ceEEeccCCcccHHHHHHHHhcC
Q 005385 645 QEQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLMHK 684 (699)
Q Consensus 645 e~de~C~ICLEef~~~e-~v~iLPCGHiFH~~CIkqWL~~k 684 (699)
.....|.||+.++...+ ....+.|+|.||.+|+++.++.+
T Consensus 144 ~~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred cccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 35678999995555443 33356899999999999999844
No 95
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.37 E-value=0.73 Score=44.61 Aligned_cols=53 Identities=26% Similarity=0.493 Sum_probs=39.6
Q ss_pred CCCcccccccccCCCCceEEe-ccCCcccHHHHHHHHh---cCCCCCCCCCCcCCCC
Q 005385 646 EQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLM---HKNLCPICKTTALSTS 698 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iL-PCGHiFH~~CIkqWL~---~k~sCPiCR~~Ll~tS 698 (699)
.-.+|-||.|...+..-+..- =||-..|..|--..++ ....||+|++....++
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 567899999987665522111 2999999999988877 3456999999987764
No 96
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.14 E-value=0.34 Score=49.86 Aligned_cols=40 Identities=28% Similarity=0.669 Sum_probs=29.7
Q ss_pred cccccccccCCCCceEEeccCCc-ccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 649 PCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 649 ~C~ICLEef~~~e~v~iLPCGHi-FH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
.|.+|.+. ..-+..+||.|+ +|..|-.. ...||+|+....
T Consensus 160 ~Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred cceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 38999665 444667799987 89999654 456999997654
No 97
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=86.13 E-value=0.2 Score=59.30 Aligned_cols=47 Identities=28% Similarity=0.654 Sum_probs=38.7
Q ss_pred CCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCC---CCCCCCCCcC
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN---LCPICKTTAL 695 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~---sCPiCR~~Ll 695 (699)
...+|+||+..|.++. .+.|-|.||..|+..-|..++ .||+|+..+.
T Consensus 20 k~lEc~ic~~~~~~p~---~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKEPS---LLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeeccc---hhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 3467999999998885 789999999999988887554 5999996543
No 98
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=85.81 E-value=0.48 Score=49.91 Aligned_cols=49 Identities=31% Similarity=0.676 Sum_probs=35.6
Q ss_pred CCcccccccccCCCCc-eEEeccC-----CcccHHHHHHHHh--cCCCCCCCCCCcC
Q 005385 647 QEPCCICQEEYNDGED-TGILHCG-----HDFHTSCIKQWLM--HKNLCPICKTTAL 695 (699)
Q Consensus 647 de~C~ICLEef~~~e~-v~iLPCG-----HiFH~~CIkqWL~--~k~sCPiCR~~Ll 695 (699)
+..|.||.++...... ....||. +..|+.|+..|+. .+..|.+|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 5689999998654321 2355766 4579999999998 4456999998654
No 99
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.55 E-value=0.39 Score=50.90 Aligned_cols=53 Identities=28% Similarity=0.616 Sum_probs=36.4
Q ss_pred CCCCCCCcccccccccCCCCce-EEeccC-----CcccHHHHHHHHhcCC--------CCCCCCCCc
Q 005385 642 GSQQEQEPCCICQEEYNDGEDT-GILHCG-----HDFHTSCIKQWLMHKN--------LCPICKTTA 694 (699)
Q Consensus 642 ~s~e~de~C~ICLEef~~~e~v-~iLPCG-----HiFH~~CIkqWL~~k~--------sCPiCR~~L 694 (699)
+..+.+..|=||+..=++.... -+-||. |-.|..|+..|+..|. .||.|+++.
T Consensus 15 ~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred CccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 3445667899998774443311 123665 6699999999997543 399999875
No 100
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.43 E-value=0.44 Score=56.62 Aligned_cols=26 Identities=38% Similarity=0.825 Sum_probs=23.6
Q ss_pred EEeccCCcccHHHHHHHHhcCCCCCC
Q 005385 664 GILHCGHDFHTSCIKQWLMHKNLCPI 689 (699)
Q Consensus 664 ~iLPCGHiFH~~CIkqWL~~k~sCPi 689 (699)
.+..|+|+.|..|.+.|++....||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCC
Confidence 45689999999999999999999985
No 101
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.72 E-value=0.63 Score=55.57 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=35.8
Q ss_pred CCCcccccccccCCCCc-eEEec---cCCcccHHHHHHHHhc------CCCCCCCCCCcC
Q 005385 646 EQEPCCICQEEYNDGED-TGILH---CGHDFHTSCIKQWLMH------KNLCPICKTTAL 695 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~-v~iLP---CGHiFH~~CIkqWL~~------k~sCPiCR~~Ll 695 (699)
+...|.||.-++..+++ ..+++ |+|.||..||..|+.+ +-.|++|...|.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 34578888888877442 23344 9999999999999852 224899987654
No 102
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.79 E-value=1.4 Score=49.32 Aligned_cols=50 Identities=22% Similarity=0.440 Sum_probs=39.5
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHhcC---CCCCCCCCCcCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK---NLCPICKTTALS 696 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k---~sCPiCR~~Ll~ 696 (699)
...|+|=.+.-.+......|.|||+.+.+-|.+..+.. ..||.|=.....
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~ 386 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLA 386 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCH
Confidence 34799987777666677899999999999999987743 469999766543
No 103
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=78.95 E-value=2.1 Score=42.56 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=21.5
Q ss_pred CCcccccccccCCCCceEEe---------ccCC-cccHHHHHHHHh
Q 005385 647 QEPCCICQEEYNDGEDTGIL---------HCGH-DFHTSCIKQWLM 682 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iL---------PCGH-iFH~~CIkqWL~ 682 (699)
+..|+||||.-.+.+.+.+. -|+- .-|..|+++.-+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 56799999885554421111 1221 147899998764
No 104
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.82 E-value=1.5 Score=46.43 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=32.0
Q ss_pred CCCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhc
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH 683 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~ 683 (699)
....-+.|+.|+..+.++. +.+=||+||++||.+++..
T Consensus 39 siK~FdcCsLtLqPc~dPv---it~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPV---ITPDGYLFDREAILEYILA 76 (303)
T ss_pred ccCCcceeeeecccccCCc---cCCCCeeeeHHHHHHHHHH
Confidence 3344568999999999888 8899999999999998753
No 105
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=77.58 E-value=0.9 Score=53.23 Aligned_cols=43 Identities=23% Similarity=0.655 Sum_probs=28.2
Q ss_pred CCCcccccccc-----cCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCC
Q 005385 646 EQEPCCICQEE-----YNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 691 (699)
Q Consensus 646 ~de~C~ICLEe-----f~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR 691 (699)
....|.||... |......++..|+++||.+|++. .+..||.|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 34568888443 22222245668999999999765 444599994
No 106
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.81 E-value=1.4 Score=47.51 Aligned_cols=27 Identities=26% Similarity=0.701 Sum_probs=21.5
Q ss_pred cCCcccHHHHHHHHh-------------cCCCCCCCCCCc
Q 005385 668 CGHDFHTSCIKQWLM-------------HKNLCPICKTTA 694 (699)
Q Consensus 668 CGHiFH~~CIkqWL~-------------~k~sCPiCR~~L 694 (699)
|....|.+|+-+|+. .+-+||+||+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 667799999999984 344699999864
No 107
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=75.71 E-value=2.4 Score=34.19 Aligned_cols=43 Identities=19% Similarity=0.334 Sum_probs=19.9
Q ss_pred CcccccccccCCCCceEEeccCCcccHHHHHHHHh---cCC--CCCCCCCC
Q 005385 648 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM---HKN--LCPICKTT 693 (699)
Q Consensus 648 e~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~---~k~--sCPiCR~~ 693 (699)
..|+|....+..+. +-..|.|.-|.+ ++.||. .+. .||+|.++
T Consensus 3 L~CPls~~~i~~P~--Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPV--RGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEE--EETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCc--cCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 46899888887665 445799984422 334443 222 49999874
No 108
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=71.82 E-value=5.2 Score=33.27 Aligned_cols=43 Identities=28% Similarity=0.747 Sum_probs=31.6
Q ss_pred CCcccccccccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCC--CCCC
Q 005385 647 QEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPI--CKTT 693 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iL-PCGHiFH~~CIkqWL~~k~sCPi--CR~~ 693 (699)
...|.+|-+.|.+++++++- .||=.+|+.|..+ ...|-+ |.+.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 45799999999866665554 6999999999754 445655 5543
No 109
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.26 E-value=2.5 Score=47.92 Aligned_cols=38 Identities=34% Similarity=0.689 Sum_probs=31.2
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK 684 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k 684 (699)
..+..|-||.+.+.. .+..+.|+|.||..|+...|..+
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhhe
Confidence 455789999999876 45677999999999999988743
No 110
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.04 E-value=2.2 Score=46.06 Aligned_cols=37 Identities=22% Similarity=0.639 Sum_probs=30.5
Q ss_pred CCCcccccccccCCCCceEEecc----CCcccHHHHHHHHhcCC
Q 005385 646 EQEPCCICQEEYNDGEDTGILHC----GHDFHTSCIKQWLMHKN 685 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPC----GHiFH~~CIkqWL~~k~ 685 (699)
....|.+|.|.+++.. ...| .|.||.-|-++-++.+.
T Consensus 267 apLcCTLC~ERLEDTH---FVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTH---FVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CceeehhhhhhhccCc---eeecCCCcccceecccCHHHHHhhc
Confidence 3478999999999888 4555 59999999999998654
No 111
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.57 E-value=2.6 Score=49.10 Aligned_cols=45 Identities=31% Similarity=0.907 Sum_probs=37.2
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
+....|.||+++. ..+..+|. |.-|+.+|+..+..||+|++.+..
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~ 521 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKE 521 (543)
T ss_pred cccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhc
Confidence 4567899999997 34567888 899999999999999999876654
No 112
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.54 E-value=2.6 Score=50.75 Aligned_cols=44 Identities=27% Similarity=0.653 Sum_probs=32.3
Q ss_pred CCcccccccccCCC----CceEEeccCCcccHHHHHHHHhcCCCCCCCC
Q 005385 647 QEPCCICQEEYNDG----EDTGILHCGHDFHTSCIKQWLMHKNLCPICK 691 (699)
Q Consensus 647 de~C~ICLEef~~~----e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR 691 (699)
+..|.-|.+..-.. ..++++.|+|.||..|+..-..+.+ |-.|-
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhh
Confidence 45799998875422 3567889999999999987766554 65554
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=64.41 E-value=4.7 Score=48.47 Aligned_cols=41 Identities=29% Similarity=0.650 Sum_probs=30.6
Q ss_pred CcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCC
Q 005385 648 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPI 689 (699)
Q Consensus 648 e~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPi 689 (699)
..|++|-..+. +..+-+--|+|.-|..|+++|+.....||.
T Consensus 780 ~~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceee-eeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 36888865542 333334469999999999999998877766
No 114
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=64.10 E-value=7.8 Score=42.68 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=38.0
Q ss_pred CCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCC
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTT 693 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~ 693 (699)
....|-.|.++......+++-.|+|.||.+|=.-.-+.-..||-|...
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh~ 376 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEHK 376 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCCC
Confidence 445699999988888877888999999999965544555679999753
No 115
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=63.16 E-value=5.7 Score=43.67 Aligned_cols=49 Identities=22% Similarity=0.395 Sum_probs=37.9
Q ss_pred CcccccccccCCCCc-eEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 648 EPCCICQEEYNDGED-TGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 648 e~C~ICLEef~~~e~-v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
..|+||.+.....+. ..-.+|++..|..|+..-......||.||++...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 679999998743332 2233789999999999988888999999987654
No 116
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=62.79 E-value=3.4 Score=42.94 Aligned_cols=43 Identities=26% Similarity=0.728 Sum_probs=35.5
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 691 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR 691 (699)
-..|-+|..-...+. ++-.|+-.||..|+...+.....||.|.
T Consensus 181 lk~Cn~Ch~LvIqg~--rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGI--RCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHhHhHHHhheee--ccCcccchhhhHHHHHHhcccCcCCchh
Confidence 457999988765554 4457888999999999999999999994
No 117
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=62.33 E-value=3.8 Score=43.89 Aligned_cols=48 Identities=21% Similarity=0.532 Sum_probs=34.5
Q ss_pred CcccccccccCCCCceEEe----ccCCcccHHHHHHHHh---------cCCCCCCCCCCcC
Q 005385 648 EPCCICQEEYNDGEDTGIL----HCGHDFHTSCIKQWLM---------HKNLCPICKTTAL 695 (699)
Q Consensus 648 e~C~ICLEef~~~e~v~iL----PCGHiFH~~CIkqWL~---------~k~sCPiCR~~Ll 695 (699)
..|-||.+++.+.+..+.+ .|.-++|..|+-.-+. ....||.|++.+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 5799999999655543332 4888999999988443 2335999998553
No 118
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.43 E-value=4.2 Score=45.63 Aligned_cols=43 Identities=28% Similarity=0.591 Sum_probs=30.5
Q ss_pred CcccccccccCCCCc---eEEeccCCcccHHHHHHHHhcCCCCCCCC
Q 005385 648 EPCCICQEEYNDGED---TGILHCGHDFHTSCIKQWLMHKNLCPICK 691 (699)
Q Consensus 648 e~C~ICLEef~~~e~---v~iLPCGHiFH~~CIkqWL~~k~sCPiCR 691 (699)
..|++|.-.++...- +.+ .|||.||+.|...|......|..|-
T Consensus 307 r~CpkC~~~ie~~~GCnhm~C-rC~~~fcy~C~~~~~~~~~~~~~~~ 352 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTC-RCGHQFCYMCGGDWKTHNGECYECC 352 (384)
T ss_pred CcCcccceeeeecCCcceEEe-eccccchhhcCcchhhCCccccCcc
Confidence 468888766654432 223 4999999999999988777775443
No 120
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=61.11 E-value=10 Score=45.36 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=28.0
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHh--c--CC--CCCCCCCCcCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM--H--KN--LCPICKTTALS 696 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~--~--k~--sCPiCR~~Ll~ 696 (699)
...|+||...+..+. +...|+|+=|.+-. |+. . +. .||+|.+.+.-
T Consensus 306 SL~CPl~~~Rm~~P~--r~~~CkHlQcFD~~--~~lq~n~~~pTW~CPVC~~~~~~ 357 (636)
T KOG2169|consen 306 SLNCPLSKMRMSLPA--RGHTCKHLQCFDAL--SYLQMNEQKPTWRCPVCQKAAPF 357 (636)
T ss_pred EecCCcccceeecCC--cccccccceecchh--hhHHhccCCCeeeCccCCccccc
Confidence 457999877765554 34567776554443 332 1 11 39999987653
No 121
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.97 E-value=10 Score=40.61 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=37.1
Q ss_pred CCcccccccccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005385 647 QEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALST 697 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iL-PCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~t 697 (699)
...|+|---++........+ .|||+|-...+++. ....|++|.+.+..+
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQED 160 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccccc
Confidence 45799887777665554444 89999999998884 466799999877654
No 122
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=55.26 E-value=8.3 Score=39.46 Aligned_cols=42 Identities=29% Similarity=0.691 Sum_probs=28.7
Q ss_pred CCCcccccccc-----cCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCC
Q 005385 646 EQEPCCICQEE-----YNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 692 (699)
Q Consensus 646 ~de~C~ICLEe-----f~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~ 692 (699)
....|-||..+ |......+.-.|+-+||..|.. +..||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 35679999753 2222223445799999999976 367999964
No 123
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.07 E-value=6 Score=43.11 Aligned_cols=50 Identities=28% Similarity=0.513 Sum_probs=41.3
Q ss_pred CCCCCCcccccccccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iL-PCGHiFH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
...+...|-||+..+..+. .. -|.|.||+.|.+.|....+.||.|+..+.
T Consensus 101 ~~~~~~~~~~~~g~l~vpt---~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 101 FQQDHDICYICYGKLTVPT---RIQGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred ccCCccceeeeeeeEEecc---cccCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 3455678999999887776 33 49999999999999999999999997654
No 124
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=46.68 E-value=9.2 Score=31.45 Aligned_cols=42 Identities=26% Similarity=0.544 Sum_probs=21.7
Q ss_pred ccccccccCCCC-------ceEEeccCCcccHHHHHHHHhcCCCCCCCC
Q 005385 650 CCICQEEYNDGE-------DTGILHCGHDFHTSCIKQWLMHKNLCPICK 691 (699)
Q Consensus 650 C~ICLEef~~~e-------~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR 691 (699)
|--|+..|.... ..+.-.|++.||.+|=.=.-+.-+.||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 555777776652 233447999999999543333445699884
No 125
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=45.55 E-value=18 Score=39.93 Aligned_cols=52 Identities=25% Similarity=0.541 Sum_probs=34.5
Q ss_pred CCCCcccccccccCC---------------CC-ceEEeccCCcccHHHHHHHHhc---------CCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYND---------------GE-DTGILHCGHDFHTSCIKQWLMH---------KNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~---------------~e-~v~iLPCGHiFH~~CIkqWL~~---------k~sCPiCR~~Ll~ 696 (699)
..+.+|++|+..-.. +. .....||||+--.+-.+=|-+. +..||.|-+.+..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 346789999876320 00 1123499999888888888752 2349999876643
No 126
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.37 E-value=8.7 Score=37.56 Aligned_cols=45 Identities=24% Similarity=0.697 Sum_probs=25.6
Q ss_pred CCCCCCcccccccccCCCCceEEeccCCc-------ccHHHHHHHHhcCC----CCCCCCCC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILHCGHD-------FHTSCIKQWLMHKN----LCPICKTT 693 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLPCGHi-------FH~~CIkqWL~~k~----sCPiCR~~ 693 (699)
...++..|-||+..--.+ -|||. ||..|--+.-.+.+ .|-+|++.
T Consensus 61 Gv~ddatC~IC~KTKFAD------G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKFAD------GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred ccCcCcchhhhhhccccc------ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 345678899998762222 26664 55555444322222 28888763
No 127
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.10 E-value=24 Score=33.43 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=35.5
Q ss_pred CCcccccccccCCCC-----------ceEEeccCCcccHHHHHHHHhcCCCCCCCCC
Q 005385 647 QEPCCICQEEYNDGE-----------DTGILHCGHDFHTSCIKQWLMHKNLCPICKT 692 (699)
Q Consensus 647 de~C~ICLEef~~~e-----------~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~ 692 (699)
...|--|+..|.... ......|++.||.+|=.-+-+.-+.||-|-.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 356999999886531 2335679999999998888777788999963
No 128
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=42.72 E-value=8.1 Score=43.53 Aligned_cols=28 Identities=29% Similarity=0.769 Sum_probs=0.0
Q ss_pred EEeccCCcccHHHHHHHHh------cCCCCCCCCCCc
Q 005385 664 GILHCGHDFHTSCIKQWLM------HKNLCPICKTTA 694 (699)
Q Consensus 664 ~iLPCGHiFH~~CIkqWL~------~k~sCPiCR~~L 694 (699)
+-|.|||++.++ .|-. ....||+||+.-
T Consensus 305 VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 305 VYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp -------------------------------------
T ss_pred eeccccceeeec---ccccccccccccccCCCccccC
Confidence 467899998754 4543 244699999854
No 129
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.71 E-value=5.5 Score=42.31 Aligned_cols=48 Identities=29% Similarity=0.668 Sum_probs=36.5
Q ss_pred CCCcccccccccCCC-C--ceEEec--------cCCcccHHHHHHHHhcC-CCCCCCCCC
Q 005385 646 EQEPCCICQEEYNDG-E--DTGILH--------CGHDFHTSCIKQWLMHK-NLCPICKTT 693 (699)
Q Consensus 646 ~de~C~ICLEef~~~-e--~v~iLP--------CGHiFH~~CIkqWL~~k-~sCPiCR~~ 693 (699)
....|.||...|... . ...++. |+|..|..|+..-+... -.||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 346799999999843 2 223445 99999999999987754 479999863
No 130
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=40.05 E-value=13 Score=30.01 Aligned_cols=38 Identities=18% Similarity=0.594 Sum_probs=21.8
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHh--cCCCCCCCCCCc
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM--HKNLCPICKTTA 694 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~--~k~sCPiCR~~L 694 (699)
...|+.|.+.|.... +...|.+.-.. ..-.||+|...+
T Consensus 2 ~f~CP~C~~~~~~~~----------L~~H~~~~H~~~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS----------LVEHCEDEHRSESKNVVCPICSSRV 41 (54)
T ss_pred CcCCCCCCCccCHHH----------HHHHHHhHCcCCCCCccCCCchhhh
Confidence 357999988654333 22344444333 234599998753
No 131
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=39.94 E-value=20 Score=39.54 Aligned_cols=46 Identities=22% Similarity=0.419 Sum_probs=33.8
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHhc---CCCCCCCCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH---KNLCPICKT 692 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~---k~sCPiCR~ 692 (699)
...|++--+.-.+......|.|||+.-.+.+.+.-+. ...||.|-.
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 3478886666555555668899999999999886552 335999964
No 132
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=38.21 E-value=50 Score=27.89 Aligned_cols=44 Identities=23% Similarity=0.652 Sum_probs=30.7
Q ss_pred cccccccccCCCC-ceEEeccC--CcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 649 PCCICQEEYNDGE-DTGILHCG--HDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 649 ~C~ICLEef~~~e-~v~iLPCG--HiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
.|-.|-.++.... +..+ |. .+||.+|.+..| +..||.|--.+..
T Consensus 7 nCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 4777777765444 2222 43 469999999966 7889999887654
No 133
>PLN02189 cellulose synthase
Probab=37.68 E-value=27 Score=43.95 Aligned_cols=50 Identities=24% Similarity=0.408 Sum_probs=33.8
Q ss_pred CCCcccccccccCCCC---c-eEEeccCCcccHHHHHHHHh-cCCCCCCCCCCcC
Q 005385 646 EQEPCCICQEEYNDGE---D-TGILHCGHDFHTSCIKQWLM-HKNLCPICKTTAL 695 (699)
Q Consensus 646 ~de~C~ICLEef~~~e---~-v~iLPCGHiFH~~CIkqWL~-~k~sCPiCR~~Ll 695 (699)
..+.|.||-++....+ . +.+-.|+--.|+.|.+-=-+ .+..||.||+...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3458999999976332 2 22335887789999843222 3456999999765
No 134
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=35.78 E-value=21 Score=32.68 Aligned_cols=40 Identities=25% Similarity=0.701 Sum_probs=30.6
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCCCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTS 698 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~tS 698 (699)
...|.||-.... .=||.||..|-.+ +..|.+|-+.|++++
T Consensus 44 ~~~C~~CK~~v~--------q~g~~YCq~CAYk----kGiCamCGKki~dtk 83 (90)
T PF10235_consen 44 SSKCKICKTKVH--------QPGAKYCQTCAYK----KGICAMCGKKILDTK 83 (90)
T ss_pred Cccccccccccc--------cCCCccChhhhcc----cCcccccCCeecccc
Confidence 457999966533 2367899999755 788999999998765
No 135
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=34.78 E-value=17 Score=43.89 Aligned_cols=48 Identities=27% Similarity=0.522 Sum_probs=34.9
Q ss_pred CCCcccccccccCCCCc-------eEEeccCCcc--------------------cHHHHHHHHhcC--------CCCCCC
Q 005385 646 EQEPCCICQEEYNDGED-------TGILHCGHDF--------------------HTSCIKQWLMHK--------NLCPIC 690 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~-------v~iLPCGHiF--------------------H~~CIkqWL~~k--------~sCPiC 690 (699)
+...|.-|++++-++.. ..++.||-.| |..|-+++-... ..||.|
T Consensus 100 D~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~C 179 (750)
T COG0068 100 DAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKC 179 (750)
T ss_pred chhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCccc
Confidence 44579999999988774 3467788776 999998775422 249999
Q ss_pred CCC
Q 005385 691 KTT 693 (699)
Q Consensus 691 R~~ 693 (699)
.-.
T Consensus 180 GP~ 182 (750)
T COG0068 180 GPH 182 (750)
T ss_pred CCC
Confidence 753
No 136
>PLN02436 cellulose synthase A
Probab=33.96 E-value=33 Score=43.32 Aligned_cols=50 Identities=26% Similarity=0.498 Sum_probs=33.8
Q ss_pred CCCcccccccccCC---CCc-eEEeccCCcccHHHHHHHHh-cCCCCCCCCCCcC
Q 005385 646 EQEPCCICQEEYND---GED-TGILHCGHDFHTSCIKQWLM-HKNLCPICKTTAL 695 (699)
Q Consensus 646 ~de~C~ICLEef~~---~e~-v~iLPCGHiFH~~CIkqWL~-~k~sCPiCR~~Ll 695 (699)
..+.|-||-++... ++. +.+-.|+--.|+.|.+-=-+ .+..||.||+...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34589999999743 332 23335887789999843222 3456999999765
No 137
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=33.53 E-value=16 Score=28.52 Aligned_cols=43 Identities=23% Similarity=0.591 Sum_probs=28.9
Q ss_pred ccccccccCCCCceEEeccCCcccHHHHHHHHh------cCCCCCCCCC
Q 005385 650 CCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM------HKNLCPICKT 692 (699)
Q Consensus 650 C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~------~k~sCPiCR~ 692 (699)
|.||.........+..-.|+-.||..|+..-.. ..-.||.|+.
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 889998544444444447999999999865443 2335887753
No 138
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=32.14 E-value=27 Score=30.33 Aligned_cols=11 Identities=27% Similarity=1.053 Sum_probs=8.5
Q ss_pred ccHHHHHHHHh
Q 005385 672 FHTSCIKQWLM 682 (699)
Q Consensus 672 FH~~CIkqWL~ 682 (699)
||+.|+.+|+.
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 139
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=30.81 E-value=22 Score=26.91 Aligned_cols=25 Identities=32% Similarity=0.747 Sum_probs=17.1
Q ss_pred cccccccccCCCCc--------eEEeccCCccc
Q 005385 649 PCCICQEEYNDGED--------TGILHCGHDFH 673 (699)
Q Consensus 649 ~C~ICLEef~~~e~--------v~iLPCGHiFH 673 (699)
.|+=|...|..+++ +....|+|+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 58888888876553 44456888774
No 140
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=30.37 E-value=17 Score=41.12 Aligned_cols=49 Identities=22% Similarity=0.482 Sum_probs=0.0
Q ss_pred CCcccccccccCC--------------CC--ceEEeccCCcccHHHHHHHHhc---------CCCCCCCCCCcC
Q 005385 647 QEPCCICQEEYND--------------GE--DTGILHCGHDFHTSCIKQWLMH---------KNLCPICKTTAL 695 (699)
Q Consensus 647 de~C~ICLEef~~--------------~e--~v~iLPCGHiFH~~CIkqWL~~---------k~sCPiCR~~Ll 695 (699)
...|++|+..-.. .. ....-||||+-=.++.+-|-+. +..||.|-..|.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 6789999865321 00 1224499999999999999652 235999988775
No 141
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=30.23 E-value=49 Score=29.65 Aligned_cols=51 Identities=22% Similarity=0.462 Sum_probs=20.5
Q ss_pred CCCcccccccccCCCC--c--eEEeccCCcccHHHHHHHHh-cCCCCCCCCCCcCC
Q 005385 646 EQEPCCICQEEYNDGE--D--TGILHCGHDFHTSCIKQWLM-HKNLCPICKTTALS 696 (699)
Q Consensus 646 ~de~C~ICLEef~~~e--~--v~iLPCGHiFH~~CIkqWL~-~k~sCPiCR~~Ll~ 696 (699)
....|-||-++....+ + +....|+--.|+.|..-=.+ ....||.|++....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 4567999999875433 2 22336888889999875444 44569999987643
No 142
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=29.70 E-value=1.6e+02 Score=36.53 Aligned_cols=9 Identities=11% Similarity=0.383 Sum_probs=3.7
Q ss_pred CCCCCCCCC
Q 005385 431 STPGNVASS 439 (699)
Q Consensus 431 ~~~gn~~s~ 439 (699)
.+.+|+|..
T Consensus 522 ~~~~~iP~P 530 (1102)
T KOG1924|consen 522 PIDGGIPPP 530 (1102)
T ss_pred CCCCCCCCC
Confidence 334444433
No 143
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.59 E-value=32 Score=39.14 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=27.0
Q ss_pred CCCcccccccccCCCC---ceEEeccCCcccHHHHHHHH
Q 005385 646 EQEPCCICQEEYNDGE---DTGILHCGHDFHTSCIKQWL 681 (699)
Q Consensus 646 ~de~C~ICLEef~~~e---~v~iLPCGHiFH~~CIkqWL 681 (699)
....|+-|.-.++..+ +..++.|+|.||.-|-.-..
T Consensus 367 N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~ 405 (445)
T KOG1814|consen 367 NSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLY 405 (445)
T ss_pred cCCCCCcccceeecCCCccceeeccccccceeehhhhcC
Confidence 3457888887776544 56778999999999976544
No 144
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=29.09 E-value=30 Score=40.89 Aligned_cols=36 Identities=33% Similarity=0.630 Sum_probs=25.6
Q ss_pred CCCCcccccccccCCCC----------ceEEeccCCcccHHHHHHH
Q 005385 645 QEQEPCCICQEEYNDGE----------DTGILHCGHDFHTSCIKQW 680 (699)
Q Consensus 645 e~de~C~ICLEef~~~e----------~v~iLPCGHiFH~~CIkqW 680 (699)
+....|+||.|.|..-. +.+.+.=|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 67788999999996411 1223346889999998654
No 145
>PLN02248 cellulose synthase-like protein
Probab=28.46 E-value=75 Score=40.51 Aligned_cols=30 Identities=23% Similarity=0.564 Sum_probs=26.1
Q ss_pred eccCCcccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 666 LHCGHDFHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 666 LPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
..|++..|++|....++....||-||.+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1135)
T PLN02248 148 CECGFKICRDCYIDAVKSGGICPGCKEPYK 177 (1135)
T ss_pred ccccchhHHhHhhhhhhcCCCCCCCccccc
Confidence 357788899999999999899999998764
No 146
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=27.67 E-value=6.1 Score=42.29 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=20.8
Q ss_pred CCcccccccccCCCCceEEe--ccCCcccHHHHHHHHhcCCCCCCCCCC
Q 005385 647 QEPCCICQEEYNDGEDTGIL--HCGHDFHTSCIKQWLMHKNLCPICKTT 693 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iL--PCGHiFH~~CIkqWL~~k~sCPiCR~~ 693 (699)
...|+||-..-........- --.|.+|.-|-.+|-..+..||.|-..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 46899997663322200000 024678888999998888899999754
No 147
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=27.63 E-value=22 Score=46.23 Aligned_cols=53 Identities=21% Similarity=0.459 Sum_probs=37.5
Q ss_pred CCCCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcC----CCCCCCCCCc
Q 005385 642 GSQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK----NLCPICKTTA 694 (699)
Q Consensus 642 ~s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k----~sCPiCR~~L 694 (699)
........|-||.....+...+.+.-|--.||..|++.-+... -.||-||..-
T Consensus 1103 ~~s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1103 DRSAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred ccccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 3444556799998887765655555688888899988887633 2499998653
No 148
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=27.56 E-value=33 Score=36.85 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=31.8
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCC--CCCCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN--LCPIC 690 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~--sCPiC 690 (699)
...|+|=...+..+. +-..|||+|-++-|.+.+.... .||+=
T Consensus 176 s~rdPis~~~I~nPv--iSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPV--ISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhchh--hhcCcCcchhhhhHHHHhccCceeecccc
Confidence 457998777776665 4457999999999999987643 48863
No 149
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=27.32 E-value=67 Score=30.10 Aligned_cols=46 Identities=17% Similarity=0.457 Sum_probs=28.3
Q ss_pred CCCcccccccccCCC--CceEEeccCCcccHHHHHHHHhcCC--CCCCCCC
Q 005385 646 EQEPCCICQEEYNDG--EDTGILHCGHDFHTSCIKQWLMHKN--LCPICKT 692 (699)
Q Consensus 646 ~de~C~ICLEef~~~--e~v~iLPCGHiFH~~CIkqWL~~k~--sCPiCR~ 692 (699)
.+..|.+|...|..- .......|+|.+|..|-.. ..... .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 567899999887432 3345668999999999654 11111 2777754
No 150
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=25.90 E-value=58 Score=41.26 Aligned_cols=50 Identities=20% Similarity=0.372 Sum_probs=33.9
Q ss_pred CCCcccccccccCCCC---c-eEEeccCCcccHHHHHHHHh-cCCCCCCCCCCcC
Q 005385 646 EQEPCCICQEEYNDGE---D-TGILHCGHDFHTSCIKQWLM-HKNLCPICKTTAL 695 (699)
Q Consensus 646 ~de~C~ICLEef~~~e---~-v~iLPCGHiFH~~CIkqWL~-~k~sCPiCR~~Ll 695 (699)
....|-||-++....+ . +.+-.|+-=.|+.|.+==-+ ....||.||+...
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3458999999976443 1 33446887799999843111 3456999998765
No 151
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=25.88 E-value=15 Score=39.98 Aligned_cols=40 Identities=28% Similarity=0.491 Sum_probs=31.1
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK 684 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k 684 (699)
.....|.||+++|..+.....+.|--.||..|+..|+...
T Consensus 212 k~~rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 212 KPIRVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred CCceecHHHHHHHhcccccchhhccccccccccccccccc
Confidence 3344899999999865555566677799999999999743
No 152
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=25.37 E-value=68 Score=29.09 Aligned_cols=39 Identities=15% Similarity=0.393 Sum_probs=31.0
Q ss_pred CCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
....|.-|...+.--+ ..| |..|+..+..|..|++++..
T Consensus 32 ~rS~C~~C~~~L~~~~---lIP---------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 32 PRSHCPHCGHPLSWWD---LIP---------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCCcCcCCCCcCcccc---cch---------HHHHHHhCCCCcccCCCCCh
Confidence 3467999988877666 444 77899999999999998864
No 153
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=25.07 E-value=44 Score=23.93 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=12.0
Q ss_pred cccccccccCCCCceEEeccCCcccHHHH
Q 005385 649 PCCICQEEYNDGEDTGILHCGHDFHTSCI 677 (699)
Q Consensus 649 ~C~ICLEef~~~e~v~iLPCGHiFH~~CI 677 (699)
.|.+|.+............|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 58899888766445567789999999996
No 154
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=25.05 E-value=28 Score=29.05 Aligned_cols=37 Identities=24% Similarity=0.501 Sum_probs=19.1
Q ss_pred CCCCcccccccccCCCCc-eEEeccCCcccHHHHHHHH
Q 005385 645 QEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQWL 681 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~-v~iLPCGHiFH~~CIkqWL 681 (699)
.+...|.+|...|..-.. ...-.||++||..|....+
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 456789999999965432 2233699999999987544
No 155
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=24.88 E-value=64 Score=35.71 Aligned_cols=52 Identities=17% Similarity=0.395 Sum_probs=36.5
Q ss_pred CCCCCCCcccccccccCCCC-----------ceEEeccCCcccHHHHHHHHhcCCCCCCCCCC
Q 005385 642 GSQQEQEPCCICQEEYNDGE-----------DTGILHCGHDFHTSCIKQWLMHKNLCPICKTT 693 (699)
Q Consensus 642 ~s~e~de~C~ICLEef~~~e-----------~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~ 693 (699)
........|-.|+..|..+. .+.+-.|+-.||.+|-.-.-+.-..|+-|.-+
T Consensus 357 ~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh~C~gCe~~ 419 (421)
T COG5151 357 GTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDVFIHETLHFCIGCELP 419 (421)
T ss_pred CCCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHHHHHHHHhhCCCCcCC
Confidence 33345567999999886533 23445699999999976555566679999643
No 156
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=24.71 E-value=5.8 Score=34.60 Aligned_cols=40 Identities=28% Similarity=0.565 Sum_probs=19.8
Q ss_pred CcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 648 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 648 e~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
..|++|..++.-.. +|.+|..|-+. +.....||-|.+++.
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHHH
Confidence 46888887753222 56666667654 334556888887763
No 157
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=24.23 E-value=38 Score=37.47 Aligned_cols=29 Identities=28% Similarity=0.733 Sum_probs=18.6
Q ss_pred eEEeccCCcccHHHHHHHHhc------CCCCCCCCCCc
Q 005385 663 TGILHCGHDFHTSCIKQWLMH------KNLCPICKTTA 694 (699)
Q Consensus 663 v~iLPCGHiFH~~CIkqWL~~------k~sCPiCR~~L 694 (699)
.+-|.|||+-.+ ..|=.+ ...||+||..-
T Consensus 317 ~vYl~CGHV~G~---H~WG~~e~~g~~~r~CPmC~~~g 351 (429)
T KOG3842|consen 317 WVYLNCGHVHGY---HNWGVRENTGQRERECPMCRVVG 351 (429)
T ss_pred eEEEeccccccc---cccccccccCcccCcCCeeeeec
Confidence 456899997433 246543 23599999753
No 158
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=23.53 E-value=64 Score=22.95 Aligned_cols=38 Identities=24% Similarity=0.542 Sum_probs=24.7
Q ss_pred cccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 649 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 649 ~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
.|..|.+.+...+.. ...=+..||..|. .|..|+..|.
T Consensus 1 ~C~~C~~~i~~~~~~-~~~~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELV-LRALGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEE-EEeCCccccccCC--------CCcccCCcCc
Confidence 378888877665322 2234677888775 5788887664
No 160
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=23.21 E-value=67 Score=40.62 Aligned_cols=51 Identities=22% Similarity=0.469 Sum_probs=35.2
Q ss_pred CCCCcccccccccCCCC---c-eEEeccCCcccHHHHHHHHh-cCCCCCCCCCCcC
Q 005385 645 QEQEPCCICQEEYNDGE---D-TGILHCGHDFHTSCIKQWLM-HKNLCPICKTTAL 695 (699)
Q Consensus 645 e~de~C~ICLEef~~~e---~-v~iLPCGHiFH~~CIkqWL~-~k~sCPiCR~~Ll 695 (699)
...+.|-||-++..... . +.+-.|+--.|+.|.+-=.+ ....||.||+...
T Consensus 13 ~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 35678999999975433 1 33446888899999943222 3456999998765
No 161
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=23.15 E-value=49 Score=34.91 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=18.5
Q ss_pred ccHHHHHHHHhcCCCCCCCCCC
Q 005385 672 FHTSCIKQWLMHKNLCPICKTT 693 (699)
Q Consensus 672 FH~~CIkqWL~~k~sCPiCR~~ 693 (699)
-|..|-.+.-+.-..||+||+.
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~K 217 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAK 217 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccc
Confidence 4889988877778899999974
No 162
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=23.02 E-value=38 Score=25.68 Aligned_cols=25 Identities=32% Similarity=0.713 Sum_probs=17.0
Q ss_pred cccccccccCCCCc--------eEEeccCCccc
Q 005385 649 PCCICQEEYNDGED--------TGILHCGHDFH 673 (699)
Q Consensus 649 ~C~ICLEef~~~e~--------v~iLPCGHiFH 673 (699)
.|+-|...|..+++ ++...|+|+|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 58888888876552 34446778774
No 163
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=22.99 E-value=78 Score=29.45 Aligned_cols=24 Identities=21% Similarity=0.574 Sum_probs=18.2
Q ss_pred CCcccHHHHHHHHhc---------CCCCCCCCC
Q 005385 669 GHDFHTSCIKQWLMH---------KNLCPICKT 692 (699)
Q Consensus 669 GHiFH~~CIkqWL~~---------k~sCPiCR~ 692 (699)
.=.||..||..++.. +-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 667999999888742 224999985
No 164
>PLN02400 cellulose synthase
Probab=22.80 E-value=54 Score=41.57 Aligned_cols=50 Identities=24% Similarity=0.459 Sum_probs=33.8
Q ss_pred CCCcccccccccCCCC--c--eEEeccCCcccHHHHHHHHh-cCCCCCCCCCCcC
Q 005385 646 EQEPCCICQEEYNDGE--D--TGILHCGHDFHTSCIKQWLM-HKNLCPICKTTAL 695 (699)
Q Consensus 646 ~de~C~ICLEef~~~e--~--v~iLPCGHiFH~~CIkqWL~-~k~sCPiCR~~Ll 695 (699)
..+.|-||-++....+ + +.+-.|+--.|+.|.+==-+ ....||.||+...
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 3458999999976443 1 33446887789999842111 3346999999765
No 165
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.21 E-value=46 Score=40.09 Aligned_cols=43 Identities=16% Similarity=0.417 Sum_probs=30.1
Q ss_pred CCcccccccccC-CCCceEEeccCCcccHHHHHHHHhcCCCCCCCCC
Q 005385 647 QEPCCICQEEYN-DGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 692 (699)
Q Consensus 647 de~C~ICLEef~-~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~ 692 (699)
...|.+|+..=. +.+..+.+.|+-.||..| |+.....||+|--
T Consensus 654 ~r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~~ 697 (717)
T KOG3726|consen 654 IRTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCGP 697 (717)
T ss_pred HHHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccCc
Confidence 457899976532 222345568999999998 5556788999964
No 166
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=22.15 E-value=58 Score=25.98 Aligned_cols=35 Identities=17% Similarity=0.441 Sum_probs=26.1
Q ss_pred CcccccccccCCCC-ceEEeccCCcccHHHHHHHHh
Q 005385 648 EPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLM 682 (699)
Q Consensus 648 e~C~ICLEef~~~e-~v~iLPCGHiFH~~CIkqWL~ 682 (699)
..|.+|...|..-. +...-.||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 56999988887644 223447999999999987655
No 167
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=21.86 E-value=22 Score=42.76 Aligned_cols=48 Identities=25% Similarity=0.564 Sum_probs=30.4
Q ss_pred CCcccccccccCCCC-c-eEEe-----ccCCcccHHHHHHHH----------hcCCCCCCCCCCc
Q 005385 647 QEPCCICQEEYNDGE-D-TGIL-----HCGHDFHTSCIKQWL----------MHKNLCPICKTTA 694 (699)
Q Consensus 647 de~C~ICLEef~~~e-~-v~iL-----PCGHiFH~~CIkqWL----------~~k~sCPiCR~~L 694 (699)
...|-||.|+-...+ . -.++ .|+..||..|....= ..-+.|-.|+..+
T Consensus 117 nKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hf 181 (900)
T KOG0956|consen 117 NKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHF 181 (900)
T ss_pred cceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHH
Confidence 468999999844322 1 1233 477889999986641 1123499998654
No 168
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=21.40 E-value=34 Score=38.79 Aligned_cols=33 Identities=18% Similarity=0.535 Sum_probs=23.1
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHH
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQW 680 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqW 680 (699)
..+|+||+-.|.....+ .--|.-..|.+|..+.
T Consensus 74 ~~ecpicflyyps~~n~-~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 74 KTECPICFLYYPSAKNL-VRCCSETICGECFAPF 106 (482)
T ss_pred cccCceeeeecccccch-hhhhccchhhhheecc
Confidence 36899999998653321 1138888899998664
No 169
>PRK04023 DNA polymerase II large subunit; Validated
Probab=20.84 E-value=57 Score=41.12 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=33.3
Q ss_pred CCCCcccccccccCCCCceEEeccCC-----cccHHHHHHHHhcCCCCCCCCCCcCCCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGH-----DFHTSCIKQWLMHKNLCPICKTTALSTS 698 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGH-----iFH~~CIkqWL~~k~sCPiCR~~Ll~tS 698 (699)
.....|+-|-... ....+-.||. .||.+|-. ......||.|...+...+
T Consensus 624 Vg~RfCpsCG~~t---~~frCP~CG~~Te~i~fCP~CG~--~~~~y~CPKCG~El~~~s 677 (1121)
T PRK04023 624 IGRRKCPSCGKET---FYRRCPFCGTHTEPVYRCPRCGI--EVEEDECEKCGREPTPYS 677 (1121)
T ss_pred ccCccCCCCCCcC---CcccCCCCCCCCCcceeCccccC--cCCCCcCCCCCCCCCccc
Confidence 4456799997774 2233556984 59999943 344567999999887643
No 170
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=20.76 E-value=26 Score=42.94 Aligned_cols=36 Identities=19% Similarity=0.472 Sum_probs=26.1
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHH
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWL 681 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL 681 (699)
.....|-.|......- .-++-.|+|.||..|++.|.
T Consensus 227 g~~~mC~~C~~tlfn~-hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 227 GIREMCDRCETTLFNI-HWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred Ccchhhhhhcccccce-eEEccccCCeeeecchhhcc
Confidence 3456798997664321 23455799999999999995
No 171
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=20.57 E-value=83 Score=35.34 Aligned_cols=47 Identities=26% Similarity=0.636 Sum_probs=27.1
Q ss_pred CCCCcccccccccCCCCceEEec---cCCcc--------cHHHHHHHH-----hcCCCCCCCCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILH---CGHDF--------HTSCIKQWL-----MHKNLCPICKT 692 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLP---CGHiF--------H~~CIkqWL-----~~k~sCPiCR~ 692 (699)
..++.|++|-+.. .+...+.|. |+-.| |+.|+..-- ..++.||.||.
T Consensus 13 dl~ElCPVCGDkV-SGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 13 DLGELCPVCGDKV-SGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred ccccccccccCcc-ccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence 4567899997774 455556664 44444 344543310 12345999985
No 172
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=20.25 E-value=66 Score=39.50 Aligned_cols=34 Identities=18% Similarity=0.408 Sum_probs=24.9
Q ss_pred CcccccccccCCCC------ceEEeccCCcccHHHHHHHH
Q 005385 648 EPCCICQEEYNDGE------DTGILHCGHDFHTSCIKQWL 681 (699)
Q Consensus 648 e~C~ICLEef~~~e------~v~iLPCGHiFH~~CIkqWL 681 (699)
+.|.+|...|..-. +--+-.||.+||..|-....
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 56999999995321 11245799999999997664
No 173
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.24 E-value=1.1e+02 Score=27.14 Aligned_cols=44 Identities=23% Similarity=0.548 Sum_probs=27.4
Q ss_pred ccccccccCCCC-ceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 650 CCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 650 C~ICLEef~~~e-~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
|--|-.++..+. +..+-.=.|+||.+|.... ....||.|--.+.
T Consensus 8 CECCDrDLpp~s~dA~ICtfEcTFCadCae~~--l~g~CPnCGGelv 52 (84)
T COG3813 8 CECCDRDLPPDSTDARICTFECTFCADCAENR--LHGLCPNCGGELV 52 (84)
T ss_pred CcccCCCCCCCCCceeEEEEeeehhHhHHHHh--hcCcCCCCCchhh
Confidence 555666654322 1222123378999999874 4678999987664
No 174
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=20.14 E-value=46 Score=40.45 Aligned_cols=49 Identities=31% Similarity=0.626 Sum_probs=30.8
Q ss_pred CCCcccccccccCCCCc-------eEEeccCCcc--------------------cHHHHHHHHhcC--------CCCCCC
Q 005385 646 EQEPCCICQEEYNDGED-------TGILHCGHDF--------------------HTSCIKQWLMHK--------NLCPIC 690 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~-------v~iLPCGHiF--------------------H~~CIkqWL~~k--------~sCPiC 690 (699)
+...|.=|+.++.++.. ..++.||-.| |.+|.++.-... ..||.|
T Consensus 67 D~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~C 146 (711)
T TIGR00143 67 DVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPRC 146 (711)
T ss_pred chhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCCC
Confidence 33467777777766553 2355676554 999999864311 249999
Q ss_pred CCCc
Q 005385 691 KTTA 694 (699)
Q Consensus 691 R~~L 694 (699)
--.+
T Consensus 147 gp~l 150 (711)
T TIGR00143 147 GPQL 150 (711)
T ss_pred CcEE
Confidence 6443
Done!