Query 005385
Match_columns 699
No_of_seqs 264 out of 1801
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 23:51:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.5 2.8E-14 9.4E-19 124.1 6.6 76 620-696 14-89 (91)
2 2ep4_A Ring finger protein 24; 99.4 2.2E-13 7.5E-18 113.0 5.9 54 644-697 12-65 (74)
3 1x4j_A Ring finger protein 38; 99.4 1.2E-13 4.3E-18 115.2 4.3 55 644-698 20-74 (75)
4 2kiz_A E3 ubiquitin-protein li 99.4 4.5E-13 1.5E-17 109.7 6.1 55 643-697 10-64 (69)
5 2ect_A Ring finger protein 126 99.4 3.6E-13 1.2E-17 112.8 4.8 55 643-697 11-65 (78)
6 1iym_A EL5; ring-H2 finger, ub 99.4 3.3E-13 1.1E-17 105.7 4.1 51 645-695 3-54 (55)
7 1v87_A Deltex protein 2; ring- 99.3 2.6E-12 8.9E-17 114.9 6.9 51 646-696 24-94 (114)
8 2ecm_A Ring finger and CHY zin 99.3 3.2E-12 1.1E-16 99.8 5.1 51 645-695 3-54 (55)
9 2ea6_A Ring finger protein 4; 99.2 3.2E-12 1.1E-16 103.7 4.1 54 643-696 11-68 (69)
10 3ng2_A RNF4, snurf, ring finge 99.2 2.8E-12 9.6E-17 105.0 3.8 53 645-697 8-64 (71)
11 2ecl_A Ring-box protein 2; RNF 99.2 8.1E-12 2.8E-16 106.6 5.8 53 644-696 12-76 (81)
12 3dpl_R Ring-box protein 1; ubi 99.2 6.6E-12 2.2E-16 113.3 4.7 53 642-694 32-99 (106)
13 2d8t_A Dactylidin, ring finger 99.2 5.1E-12 1.7E-16 104.5 3.1 49 644-695 12-60 (71)
14 2xeu_A Ring finger protein 4; 99.2 6.8E-12 2.3E-16 100.4 3.7 52 646-697 2-57 (64)
15 2djb_A Polycomb group ring fin 99.2 1.2E-11 4.2E-16 102.4 5.1 52 643-697 11-63 (72)
16 2ct2_A Tripartite motif protei 99.2 3E-11 1E-15 102.6 6.3 54 643-696 11-68 (88)
17 2csy_A Zinc finger protein 183 99.1 1.9E-11 6.5E-16 103.3 4.5 49 644-695 12-60 (81)
18 1chc_A Equine herpes virus-1 r 99.1 1.7E-11 5.9E-16 99.8 3.6 50 645-696 3-52 (68)
19 2yur_A Retinoblastoma-binding 99.1 3E-11 1E-15 100.8 4.6 51 643-696 11-64 (74)
20 2ecn_A Ring finger protein 141 99.1 1.1E-11 3.6E-16 101.8 1.6 50 644-697 12-61 (70)
21 2ysl_A Tripartite motif-contai 99.1 3.4E-11 1.2E-15 99.2 4.6 51 644-697 17-70 (73)
22 2ecy_A TNF receptor-associated 99.1 4.3E-11 1.5E-15 97.4 5.1 51 644-697 12-63 (66)
23 4ayc_A E3 ubiquitin-protein li 99.1 2.1E-11 7.2E-16 113.4 3.0 48 646-696 52-99 (138)
24 1t1h_A Gspef-atpub14, armadill 99.1 6.4E-11 2.2E-15 99.1 4.9 49 645-696 6-55 (78)
25 2ecw_A Tripartite motif-contai 99.1 8.5E-11 2.9E-15 98.6 5.6 50 644-696 16-71 (85)
26 2d8s_A Cellular modulator of i 99.1 5.9E-11 2E-15 102.1 4.7 53 643-696 11-70 (80)
27 4a0k_B E3 ubiquitin-protein li 99.1 1.2E-11 4E-16 113.8 -0.6 54 641-694 42-110 (117)
28 2ecv_A Tripartite motif-contai 99.1 1E-10 3.5E-15 98.1 4.9 50 644-696 16-71 (85)
29 2ysj_A Tripartite motif-contai 99.0 1.5E-10 5.1E-15 93.2 5.1 45 643-690 16-63 (63)
30 3lrq_A E3 ubiquitin-protein li 99.0 4.9E-11 1.7E-15 105.3 2.4 48 646-696 21-70 (100)
31 2egp_A Tripartite motif-contai 99.0 4.4E-11 1.5E-15 99.8 1.8 50 644-696 9-65 (79)
32 3ztg_A E3 ubiquitin-protein li 99.0 1.5E-10 5.1E-15 99.7 4.5 49 643-694 9-60 (92)
33 2ckl_A Polycomb group ring fin 99.0 1.4E-10 4.7E-15 103.3 4.0 49 645-696 13-62 (108)
34 2y43_A E3 ubiquitin-protein li 99.0 9.6E-11 3.3E-15 102.5 3.0 48 646-696 21-69 (99)
35 1jm7_A BRCA1, breast cancer ty 99.0 2.7E-10 9.2E-15 101.0 5.4 47 647-696 21-70 (112)
36 4ap4_A E3 ubiquitin ligase RNF 99.0 1.6E-10 5.4E-15 104.3 3.9 52 645-696 5-60 (133)
37 3fl2_A E3 ubiquitin-protein li 99.0 1.3E-10 4.6E-15 105.7 3.2 48 646-696 51-99 (124)
38 2ecj_A Tripartite motif-contai 99.0 2.4E-10 8.2E-15 89.9 4.2 44 644-690 12-58 (58)
39 1g25_A CDK-activating kinase a 98.9 4.7E-10 1.6E-14 90.9 4.6 52 646-697 2-56 (65)
40 1z6u_A NP95-like ring finger p 98.9 3.7E-10 1.3E-14 107.2 3.4 49 646-697 77-126 (150)
41 2ckl_B Ubiquitin ligase protei 98.9 4.4E-10 1.5E-14 107.0 3.9 47 646-695 53-101 (165)
42 2kr4_A Ubiquitin conjugation f 98.9 9.6E-10 3.3E-14 94.8 4.4 49 645-696 12-60 (85)
43 3l11_A E3 ubiquitin-protein li 98.9 1.7E-10 5.9E-15 103.5 -0.3 48 645-695 13-61 (115)
44 3hct_A TNF receptor-associated 98.9 7.5E-10 2.6E-14 100.2 3.3 51 643-696 14-65 (118)
45 2ct0_A Non-SMC element 1 homol 98.8 1.7E-09 6E-14 92.0 4.6 50 645-696 13-64 (74)
46 2kre_A Ubiquitin conjugation f 98.8 1.5E-09 5.1E-14 96.7 4.3 49 645-696 27-75 (100)
47 4ap4_A E3 ubiquitin ligase RNF 98.8 1.3E-09 4.4E-14 98.4 3.8 52 645-696 70-125 (133)
48 1wgm_A Ubiquitin conjugation f 98.8 1.9E-09 6.5E-14 95.7 4.4 49 645-696 20-69 (98)
49 1rmd_A RAG1; V(D)J recombinati 98.8 1.5E-09 5.2E-14 97.5 3.0 47 647-696 23-70 (116)
50 2c2l_A CHIP, carboxy terminus 98.8 2.8E-09 9.5E-14 107.4 5.2 49 645-696 206-255 (281)
51 2vje_A E3 ubiquitin-protein li 98.8 2.6E-09 8.9E-14 87.5 3.2 49 645-696 6-57 (64)
52 2y1n_A E3 ubiquitin-protein li 98.7 4.9E-09 1.7E-13 113.6 4.6 48 646-696 331-379 (389)
53 1bor_A Transcription factor PM 98.7 2.4E-09 8.3E-14 85.1 1.6 46 645-696 4-49 (56)
54 1e4u_A Transcriptional repress 98.7 7.8E-09 2.7E-13 88.3 4.7 52 644-696 8-62 (78)
55 2vje_B MDM4 protein; proto-onc 98.7 4.3E-09 1.5E-13 85.9 2.8 48 645-695 5-55 (63)
56 3knv_A TNF receptor-associated 98.7 1.8E-09 6.3E-14 101.5 0.4 49 643-694 27-76 (141)
57 1jm7_B BARD1, BRCA1-associated 98.7 2E-09 6.9E-14 97.2 0.2 45 646-695 21-66 (117)
58 2yu4_A E3 SUMO-protein ligase 98.7 8.6E-09 2.9E-13 90.3 3.4 46 645-693 5-59 (94)
59 4ic3_A E3 ubiquitin-protein li 98.6 5.9E-09 2E-13 87.4 1.0 44 646-696 23-67 (74)
60 2f42_A STIP1 homology and U-bo 98.6 2.5E-08 8.5E-13 97.9 5.2 51 643-696 102-153 (179)
61 3hcs_A TNF receptor-associated 98.6 2.2E-08 7.5E-13 95.6 3.3 51 643-696 14-65 (170)
62 2ecg_A Baculoviral IAP repeat- 98.5 6.3E-08 2.2E-12 81.1 3.1 43 647-696 25-68 (75)
63 2ea5_A Cell growth regulator w 98.4 1.6E-07 5.6E-12 77.9 3.4 46 644-696 12-58 (68)
64 1wim_A KIAA0161 protein; ring 98.4 1.5E-07 5E-12 81.9 3.2 48 646-693 4-61 (94)
65 3k1l_B Fancl; UBC, ring, RWD, 98.3 8.8E-08 3E-12 102.2 1.2 52 644-695 305-372 (381)
66 2bay_A PRE-mRNA splicing facto 98.3 1.6E-07 5.4E-12 76.7 2.4 46 648-696 4-50 (61)
67 2yho_A E3 ubiquitin-protein li 98.3 1.1E-07 3.9E-12 81.0 0.6 43 647-696 18-61 (79)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.3 5.3E-07 1.8E-11 73.4 4.0 48 645-695 4-58 (60)
69 3htk_C E3 SUMO-protein ligase 98.2 3E-07 1E-11 95.1 2.7 49 645-695 179-231 (267)
70 3t6p_A Baculoviral IAP repeat- 98.2 2.6E-07 8.8E-12 98.9 0.3 44 646-696 294-338 (345)
71 3vk6_A E3 ubiquitin-protein li 97.7 1.5E-05 5.3E-10 71.4 3.6 46 649-696 3-49 (101)
72 3nw0_A Non-structural maintena 97.3 9E-05 3.1E-09 75.5 3.0 48 646-695 179-228 (238)
73 2ko5_A Ring finger protein Z; 95.0 0.0081 2.8E-07 53.3 1.9 47 645-696 26-73 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 93.9 0.03 1E-06 48.6 3.0 34 647-680 3-36 (101)
75 3m62_A Ubiquitin conjugation f 90.3 0.54 1.9E-05 56.3 8.4 51 643-696 887-938 (968)
76 2lri_C Autoimmune regulator; Z 89.8 0.21 7.2E-06 41.3 3.3 48 645-695 10-61 (66)
77 3i2d_A E3 SUMO-protein ligase 87.6 0.29 9.8E-06 53.0 3.3 48 647-696 249-300 (371)
78 1wil_A KIAA1045 protein; ring 86.3 0.54 1.9E-05 41.1 3.7 37 643-680 11-47 (89)
79 4fo9_A E3 SUMO-protein ligase 83.2 0.65 2.2E-05 50.1 3.4 48 647-696 215-266 (360)
80 2l5u_A Chromodomain-helicase-D 79.9 0.78 2.7E-05 37.0 2.0 47 644-693 8-58 (61)
81 1we9_A PHD finger family prote 79.4 0.36 1.2E-05 38.9 -0.1 53 644-696 3-61 (64)
82 1f62_A Transcription factor WS 79.4 0.77 2.6E-05 35.4 1.7 44 649-692 2-49 (51)
83 2k16_A Transcription initiatio 76.2 0.59 2E-05 38.8 0.3 51 645-695 16-70 (75)
84 1mm2_A MI2-beta; PHD, zinc fin 74.8 0.55 1.9E-05 37.9 -0.3 50 644-696 6-59 (61)
85 2cs3_A Protein C14ORF4, MY039 72.7 3.2 0.00011 36.1 3.9 40 645-684 13-53 (93)
86 2yql_A PHD finger protein 21A; 68.6 0.37 1.3E-05 38.1 -2.6 47 643-692 5-55 (56)
87 2ysm_A Myeloid/lymphoid or mix 68.2 1.2 4.2E-05 39.5 0.4 38 645-682 5-42 (111)
88 1wep_A PHF8; structural genomi 66.8 4.2 0.00015 34.1 3.5 46 648-694 13-64 (79)
89 3v43_A Histone acetyltransfera 63.0 8.4 0.00029 34.4 4.8 33 646-678 4-42 (112)
90 1wem_A Death associated transc 62.5 2.1 7.2E-05 35.6 0.8 49 648-697 17-74 (76)
91 2ku3_A Bromodomain-containing 61.0 2.2 7.5E-05 35.6 0.6 49 644-692 13-65 (71)
92 2lv9_A Histone-lysine N-methyl 60.8 2.5 8.5E-05 37.2 1.0 45 648-693 29-76 (98)
93 2kgg_A Histone demethylase jar 60.4 6.1 0.00021 30.7 3.1 43 649-691 4-52 (52)
94 1fp0_A KAP-1 corepressor; PHD 60.2 3 0.0001 36.5 1.3 47 644-693 22-72 (88)
95 2d8v_A Zinc finger FYVE domain 59.8 4.1 0.00014 34.0 2.0 34 644-681 5-39 (67)
96 1z60_A TFIIH basal transcripti 58.8 3 0.0001 33.9 1.0 43 648-690 16-58 (59)
97 2e6r_A Jumonji/ARID domain-con 58.4 0.62 2.1E-05 40.7 -3.3 48 645-692 14-65 (92)
98 1wew_A DNA-binding family prot 58.3 2.3 8E-05 35.7 0.3 50 647-697 16-76 (78)
99 2lbm_A Transcriptional regulat 57.2 11 0.00037 35.7 4.7 47 644-693 60-117 (142)
100 1weu_A Inhibitor of growth fam 56.2 4.8 0.00017 35.3 2.0 46 647-696 36-88 (91)
101 1weo_A Cellulose synthase, cat 55.9 16 0.00055 32.2 5.2 50 646-695 15-69 (93)
102 2l43_A N-teminal domain from h 55.1 3.5 0.00012 35.7 0.9 50 645-694 23-76 (88)
103 1wen_A Inhibitor of growth fam 54.6 5.6 0.00019 33.1 2.0 45 647-695 16-67 (71)
104 2vpb_A Hpygo1, pygopus homolog 54.3 9.3 0.00032 31.3 3.3 34 644-677 5-40 (65)
105 1wev_A Riken cDNA 1110020M19; 53.0 1.1 3.6E-05 38.9 -2.8 50 646-695 15-74 (88)
106 1xwh_A Autoimmune regulator; P 51.4 1.4 4.9E-05 35.9 -2.0 46 645-693 6-55 (66)
107 1zbd_B Rabphilin-3A; G protein 51.3 6.7 0.00023 36.6 2.2 34 645-678 53-88 (134)
108 2yt5_A Metal-response element- 50.5 6.7 0.00023 31.5 1.8 51 645-695 4-63 (66)
109 1wee_A PHD finger family prote 50.4 1 3.6E-05 37.2 -3.1 52 646-698 15-71 (72)
110 2puy_A PHD finger protein 21A; 50.0 1.7 5.9E-05 34.7 -1.7 46 646-694 4-53 (60)
111 2zet_C Melanophilin; complex, 47.3 17 0.00058 34.6 4.3 33 645-677 66-100 (153)
112 2ri7_A Nucleosome-remodeling f 47.0 3.7 0.00013 38.9 -0.2 46 646-692 7-58 (174)
113 3v43_A Histone acetyltransfera 44.9 4.1 0.00014 36.4 -0.3 45 648-692 62-111 (112)
114 3ql9_A Transcriptional regulat 43.7 20 0.00067 33.4 4.1 47 644-693 54-111 (129)
115 3o70_A PHD finger protein 13; 43.0 2.7 9.4E-05 34.7 -1.6 47 645-692 17-66 (68)
116 3shb_A E3 ubiquitin-protein li 42.6 2.6 9.1E-05 35.7 -1.8 44 649-692 28-76 (77)
117 3ask_A E3 ubiquitin-protein li 42.0 4.2 0.00014 41.2 -0.8 47 647-693 174-225 (226)
118 2e6s_A E3 ubiquitin-protein li 41.2 4.9 0.00017 34.0 -0.4 46 647-692 26-76 (77)
119 2ysm_A Myeloid/lymphoid or mix 40.9 3.2 0.00011 36.8 -1.7 49 649-697 56-108 (111)
120 3mpx_A FYVE, rhogef and PH dom 40.7 5.8 0.0002 42.3 0.0 50 645-694 373-430 (434)
121 1z2q_A LM5-1; membrane protein 39.1 17 0.00058 30.8 2.7 39 642-680 16-55 (84)
122 2yw8_A RUN and FYVE domain-con 37.9 13 0.00043 31.5 1.7 37 644-680 16-53 (82)
123 3t7l_A Zinc finger FYVE domain 35.8 15 0.00051 31.7 1.8 37 645-681 18-55 (90)
124 3asl_A E3 ubiquitin-protein li 34.9 5.2 0.00018 33.2 -1.2 45 649-693 20-69 (70)
125 1wfk_A Zinc finger, FYVE domai 34.2 20 0.0007 30.8 2.4 37 644-680 6-43 (88)
126 2kwj_A Zinc finger protein DPF 33.7 1.7 5.9E-05 39.1 -4.7 49 648-696 59-111 (114)
127 1joc_A EEA1, early endosomal a 33.7 16 0.00056 33.3 1.8 37 644-680 66-103 (125)
128 1x4u_A Zinc finger, FYVE domai 33.7 20 0.00069 30.3 2.3 38 643-680 10-48 (84)
129 2xb1_A Pygopus homolog 2, B-ce 33.3 18 0.0006 32.2 1.9 49 647-695 3-63 (105)
130 2kwj_A Zinc finger protein DPF 33.2 18 0.00062 32.3 2.0 33 648-680 2-41 (114)
131 3zyq_A Hepatocyte growth facto 32.5 14 0.00049 36.7 1.4 35 646-680 163-198 (226)
132 2pv0_B DNA (cytosine-5)-methyl 32.1 27 0.00091 38.0 3.4 48 643-693 89-148 (386)
133 1y02_A CARP2, FYVE-ring finger 31.9 3.7 0.00013 37.7 -2.8 46 646-691 18-64 (120)
134 1dvp_A HRS, hepatocyte growth 31.4 15 0.0005 36.3 1.2 35 646-680 160-195 (220)
135 1vfy_A Phosphatidylinositol-3- 28.9 26 0.00089 28.9 2.1 33 647-679 11-44 (73)
136 3c6w_A P28ING5, inhibitor of g 28.5 5.2 0.00018 32.1 -2.2 42 647-692 9-57 (59)
137 2gmg_A Hypothetical protein PF 28.5 9.3 0.00032 34.5 -0.7 25 665-694 70-94 (105)
138 1x64_A Alpha-actinin-2 associa 28.3 44 0.0015 27.8 3.5 41 645-696 23-63 (89)
139 2o35_A Hypothetical protein DU 27.9 22 0.00075 31.9 1.5 11 672-682 43-53 (105)
140 4g9i_A Hydrogenase maturation 27.7 21 0.00073 41.9 1.9 50 645-694 104-188 (772)
141 3fyb_A Protein of unknown func 27.4 23 0.00077 31.8 1.5 11 672-682 42-52 (104)
142 3ttc_A HYPF, transcriptional r 26.3 23 0.00079 41.0 1.8 50 645-694 15-99 (657)
143 1m3v_A FLIN4, fusion of the LI 26.2 50 0.0017 29.2 3.6 48 648-696 33-81 (122)
144 3a1b_A DNA (cytosine-5)-methyl 25.6 36 0.0012 32.7 2.7 49 642-693 74-134 (159)
145 3kv5_D JMJC domain-containing 25.6 9.9 0.00034 42.4 -1.3 47 647-693 36-88 (488)
146 2vnf_A ING 4, P29ING4, inhibit 25.4 6.4 0.00022 31.6 -2.2 41 649-692 11-58 (60)
147 4gne_A Histone-lysine N-methyl 24.0 21 0.00071 32.1 0.7 45 643-692 11-61 (107)
148 3vth_A Hydrogenase maturation 23.1 25 0.00084 41.4 1.2 49 646-694 110-193 (761)
149 1x62_A C-terminal LIM domain p 23.0 43 0.0015 27.2 2.4 38 646-694 14-51 (79)
150 2cu8_A Cysteine-rich protein 2 20.8 37 0.0013 27.2 1.6 40 647-696 9-48 (76)
151 2dar_A PDZ and LIM domain prot 20.8 39 0.0013 28.2 1.7 38 647-695 25-62 (90)
152 1iml_A CRIP, cysteine rich int 20.7 25 0.00084 28.3 0.4 45 646-694 26-71 (76)
153 1wd2_A Ariadne-1 protein homol 20.7 13 0.00046 29.9 -1.2 38 647-684 6-48 (60)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.49 E-value=2.8e-14 Score=124.15 Aligned_cols=76 Identities=28% Similarity=0.597 Sum_probs=61.3
Q ss_pred CCCCCHHHHHHhhhhcccccccCCCCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 620 STGLTEETIKNRLKQQKYSISLGSQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 620 stgLsee~I~k~L~~~k~~~~~~s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
..+++++.+. .++..++........++..|+||+++|..++.+..++|+|.||..||.+||..+..||+||+.+.+
T Consensus 14 ~~~~s~~~i~-~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 14 NPPASKESID-ALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCCHHHHH-TSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCHHHHH-hCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3466666554 456665554444456678899999999998888889999999999999999999999999998865
No 2
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.2e-13 Score=113.03 Aligned_cols=54 Identities=31% Similarity=0.896 Sum_probs=48.9
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 697 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~t 697 (699)
...+..|+||+++|..+..+..++|+|.||..||.+|++.+..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 345678999999999999888889999999999999999999999999998764
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.2e-13 Score=115.16 Aligned_cols=55 Identities=33% Similarity=0.872 Sum_probs=49.7
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCCCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTS 698 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~tS 698 (699)
..++..|+||+++|..++.+..++|+|.||..||.+|++.+..||+||+.+.+.+
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 3456789999999999988889999999999999999999999999999987754
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=4.5e-13 Score=109.73 Aligned_cols=55 Identities=36% Similarity=0.862 Sum_probs=48.6
Q ss_pred CCCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 697 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~t 697 (699)
....+..|+||++.|..+..+..++|+|.||..||.+|+..+..||+||+.+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 3455678999999998888888899999999999999999999999999987653
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.36 E-value=3.6e-13 Score=112.82 Aligned_cols=55 Identities=35% Similarity=0.817 Sum_probs=48.9
Q ss_pred CCCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 697 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~t 697 (699)
....+..|+||++.|..++.+..++|+|.||..||.+|++.+..||+||+.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 3455678999999999988888899999999999999999999999999988653
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.36 E-value=3.3e-13 Score=105.70 Aligned_cols=51 Identities=37% Similarity=1.024 Sum_probs=46.2
Q ss_pred CCCCcccccccccCCCCceEEec-cCCcccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILH-CGHDFHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLP-CGHiFH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
+++..|+||+++|..++.+..++ |+|.||..||.+|++.+..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45678999999999988888887 9999999999999999999999999874
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.30 E-value=2.6e-12 Score=114.93 Aligned_cols=51 Identities=29% Similarity=0.571 Sum_probs=41.5
Q ss_pred CCCcccccccccCCCC---------------ceEEeccCCcccHHHHHHHHh-----cCCCCCCCCCCcCC
Q 005385 646 EQEPCCICQEEYNDGE---------------DTGILHCGHDFHTSCIKQWLM-----HKNLCPICKTTALS 696 (699)
Q Consensus 646 ~de~C~ICLEef~~~e---------------~v~iLPCGHiFH~~CIkqWL~-----~k~sCPiCR~~Ll~ 696 (699)
.++.|+||+++|..+. .+..++|+|.||..||.+||. .+.+||+||+.+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999997654 234679999999999999994 46689999998754
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.27 E-value=3.2e-12 Score=99.85 Aligned_cols=51 Identities=27% Similarity=0.669 Sum_probs=44.1
Q ss_pred CCCCcccccccccCCCC-ceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 645 QEQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 645 e~de~C~ICLEef~~~e-~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
.++..|+||+++|.+.. .+..++|+|.||..||.+|++.+..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 35678999999997644 4667899999999999999999999999999875
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.2e-12 Score=103.75 Aligned_cols=54 Identities=26% Similarity=0.599 Sum_probs=45.5
Q ss_pred CCCCCCcccccccccCCC----CceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 643 SQQEQEPCCICQEEYNDG----EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~----e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
...+...|+||++.|.++ ..+..++|||.||..||.+|+..+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345667899999999865 234678999999999999999999999999998753
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.24 E-value=2.8e-12 Score=105.00 Aligned_cols=53 Identities=26% Similarity=0.614 Sum_probs=45.6
Q ss_pred CCCCcccccccccCCC----CceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005385 645 QEQEPCCICQEEYNDG----EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 697 (699)
Q Consensus 645 e~de~C~ICLEef~~~----e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~t 697 (699)
.++..|+||++.|.++ ..+..++|||.||..||.+|++.+..||+||+.+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 4567899999999764 3446789999999999999999999999999988753
No 11
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=8.1e-12 Score=106.58 Aligned_cols=53 Identities=28% Similarity=0.796 Sum_probs=42.6
Q ss_pred CCCCCcccccccccCC-----------CCceEEe-ccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 644 QQEQEPCCICQEEYND-----------GEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 644 ~e~de~C~ICLEef~~-----------~e~v~iL-PCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
..+++.|+||+++|.+ .+.++.+ +|+|.||..||.+||+.+.+||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 3456778888888865 3335555 599999999999999999999999998753
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.21 E-value=6.6e-12 Score=113.34 Aligned_cols=53 Identities=26% Similarity=0.593 Sum_probs=44.7
Q ss_pred CCCCCCCcccccccccCCCC---------------ceEEeccCCcccHHHHHHHHhcCCCCCCCCCCc
Q 005385 642 GSQQEQEPCCICQEEYNDGE---------------DTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 694 (699)
Q Consensus 642 ~s~e~de~C~ICLEef~~~e---------------~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~L 694 (699)
....+++.|+||++.|.... .+..++|+|.||..||.+||..+.+||+||+.+
T Consensus 32 ~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 32 AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp EESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred ecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 34456788999999998652 256679999999999999999999999999984
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=5.1e-12 Score=104.46 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=43.2
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
..++..|+||++.+.++. .++|||.||..||.+|+..+..||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~---~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPV---SLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSSEE---EETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccCCCE---EccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 455678999999987654 7899999999999999999999999999875
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.20 E-value=6.8e-12 Score=100.35 Aligned_cols=52 Identities=27% Similarity=0.623 Sum_probs=44.6
Q ss_pred CCCcccccccccCCC----CceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005385 646 EQEPCCICQEEYNDG----EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 697 (699)
Q Consensus 646 ~de~C~ICLEef~~~----e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~t 697 (699)
++..|+||++.|.++ ..+..++|||.||..||.+|++.+..||+||+.+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 456899999999764 3446789999999999999999999999999988653
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.2e-11 Score=102.42 Aligned_cols=52 Identities=29% Similarity=0.564 Sum_probs=44.5
Q ss_pred CCCCCCcccccccccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALST 697 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iL-PCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~t 697 (699)
...++..|+||++.|.++. .+ +|||.||..||.+|+..+..||+||+.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDAT---TITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCE---ECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred hcCCCCCCCCCChHHHCcC---EECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 3455678999999998755 55 9999999999999999999999999988653
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=3e-11 Score=102.60 Aligned_cols=54 Identities=28% Similarity=0.680 Sum_probs=45.5
Q ss_pred CCCCCCcccccccccCCCCc-eEEeccCCcccHHHHHHHHhcC---CCCCCCCCCcCC
Q 005385 643 SQQEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQWLMHK---NLCPICKTTALS 696 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~-v~iLPCGHiFH~~CIkqWL~~k---~sCPiCR~~Ll~ 696 (699)
...+...|+||++.|.+.+. ...++|||.||..||.+|+..+ ..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 34566789999999988654 5678999999999999999976 789999998754
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.9e-11 Score=103.33 Aligned_cols=49 Identities=22% Similarity=0.546 Sum_probs=43.1
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
......|+||++.|.++. +++|||.||..||.+|+.....||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPV---VTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEE---ECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCee---EccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345678999999997754 7899999999999999999899999999875
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.14 E-value=1.7e-11 Score=99.83 Aligned_cols=50 Identities=34% Similarity=0.720 Sum_probs=43.1
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
+.+..|+||++.+.++. ..++|||.||..||.+|++.+..||+||+.+..
T Consensus 3 ~~~~~C~IC~~~~~~~~--~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYS--MALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCE--EETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCc--EecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 34578999999987643 578999999999999999999999999998753
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.12 E-value=3e-11 Score=100.82 Aligned_cols=51 Identities=25% Similarity=0.741 Sum_probs=43.3
Q ss_pred CCCCCCcccccccccCCCCceEEec-cCCcccHHHHHHHHhcC--CCCCCCCCCcCC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILH-CGHDFHTSCIKQWLMHK--NLCPICKTTALS 696 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLP-CGHiFH~~CIkqWL~~k--~sCPiCR~~Ll~ 696 (699)
...++..|+||++.|.++. .++ |||.||..||.+|+..+ ..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCE---ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cCCCCCCCcCCChHHhCCe---EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3455678999999998776 788 99999999999999865 689999998654
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.1e-11 Score=101.77 Aligned_cols=50 Identities=36% Similarity=0.898 Sum_probs=44.1
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 697 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~t 697 (699)
..+...|+||++.+.+ ..++|||.||..||.+|+..+..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 3456789999999876 5889999999999999999999999999988754
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3.4e-11 Score=99.18 Aligned_cols=51 Identities=33% Similarity=0.619 Sum_probs=43.0
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHh---cCCCCCCCCCCcCCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM---HKNLCPICKTTALST 697 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~---~k~sCPiCR~~Ll~t 697 (699)
..++..|+||++.|.++. .++|||.||..||.+|++ .+..||+||+.+...
T Consensus 17 ~~~~~~C~IC~~~~~~~~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPV---TIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSSEE---ECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCCeE---EcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 456678999999998654 779999999999999997 455799999988654
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4.3e-11 Score=97.37 Aligned_cols=51 Identities=22% Similarity=0.531 Sum_probs=43.8
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHh-cCCCCCCCCCCcCCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-HKNLCPICKTTALST 697 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~-~k~sCPiCR~~Ll~t 697 (699)
..+...|+||++.+.++. .++|||.||..||.+|+. ....||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPK---QTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEESSCC---CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCcCCCCCCCChHhcCee---ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 345678999999998877 589999999999999995 566899999998654
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.10 E-value=2.1e-11 Score=113.43 Aligned_cols=48 Identities=35% Similarity=0.882 Sum_probs=42.4
Q ss_pred CCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
++..|+||++.|.++. .++|||.||..||.+|+..+..||+||+.+..
T Consensus 52 ~~~~C~iC~~~~~~~~---~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAV---TLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEE---EETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCce---ECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3467999999997664 88999999999999999999999999998753
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.09 E-value=6.4e-11 Score=99.08 Aligned_cols=49 Identities=31% Similarity=0.518 Sum_probs=43.2
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhc-CCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~-k~sCPiCR~~Ll~ 696 (699)
.++..|+||++.|.++. .++|||.||..||.+|+.. +.+||+||+.+..
T Consensus 6 ~~~~~C~IC~~~~~~Pv---~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPV---IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEE---EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCE---EcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 45678999999998775 7899999999999999987 7789999998764
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.09 E-value=8.5e-11 Score=98.61 Aligned_cols=50 Identities=28% Similarity=0.578 Sum_probs=43.6
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhc------CCCCCCCCCCcCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH------KNLCPICKTTALS 696 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~------k~sCPiCR~~Ll~ 696 (699)
..++..|+||++.|.++. .++|||.||..||.+|+.. ...||+||+.+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPV---SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCSSCE---ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhCcce---eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 345678999999998776 7899999999999999997 6679999998764
No 26
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.9e-11 Score=102.05 Aligned_cols=53 Identities=30% Similarity=0.705 Sum_probs=44.2
Q ss_pred CCCCCCcccccccccCCCCceEEeccC-----CcccHHHHHHHHhcCC--CCCCCCCCcCC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILHCG-----HDFHTSCIKQWLMHKN--LCPICKTTALS 696 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLPCG-----HiFH~~CIkqWL~~k~--sCPiCR~~Ll~ 696 (699)
...++..|.||+++|.+++.+ ++||+ |.||.+||++||..+. +||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 345567899999999877655 68996 9999999999999664 89999998764
No 27
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.06 E-value=1.2e-11 Score=113.77 Aligned_cols=54 Identities=26% Similarity=0.578 Sum_probs=3.7
Q ss_pred cCCCCCCCcccccccccCCCC---------------ceEEeccCCcccHHHHHHHHhcCCCCCCCCCCc
Q 005385 641 LGSQQEQEPCCICQEEYNDGE---------------DTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 694 (699)
Q Consensus 641 ~~s~e~de~C~ICLEef~~~e---------------~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~L 694 (699)
......++.|+||+++|.++. .+..++|+|.||..||.+||+.+.+||+||++.
T Consensus 42 w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 42 WAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp EEECCCC--------------------------------------------------------------
T ss_pred EeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 344556789999999997632 123358999999999999999999999999974
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1e-10 Score=98.15 Aligned_cols=50 Identities=28% Similarity=0.663 Sum_probs=43.6
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhc------CCCCCCCCCCcCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH------KNLCPICKTTALS 696 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~------k~sCPiCR~~Ll~ 696 (699)
..+...|+||++.|.++. .++|||.||..||.+|+.. ...||+||+.+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPL---SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSSCB---CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCCce---eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 355678999999998776 6799999999999999987 7789999998764
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.5e-10 Score=93.20 Aligned_cols=45 Identities=33% Similarity=0.660 Sum_probs=38.6
Q ss_pred CCCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHh---cCCCCCCC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM---HKNLCPIC 690 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~---~k~sCPiC 690 (699)
...++..|+||++.|.++. .++|||.||..||.+|++ .+..||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPV---TIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCE---ECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeE---EeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456778999999998765 779999999999999998 45689998
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.04 E-value=4.9e-11 Score=105.28 Aligned_cols=48 Identities=33% Similarity=0.766 Sum_probs=41.8
Q ss_pred CCCcccccccccCCCCceEE-eccCCcccHHHHHHHHhcC-CCCCCCCCCcCC
Q 005385 646 EQEPCCICQEEYNDGEDTGI-LHCGHDFHTSCIKQWLMHK-NLCPICKTTALS 696 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~i-LPCGHiFH~~CIkqWL~~k-~sCPiCR~~Ll~ 696 (699)
++..|+||++.|.++. . ++|||.||..||.+|+..+ ..||+||+.+..
T Consensus 21 ~~~~C~IC~~~~~~p~---~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDAR---LCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccCcc---ccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4567999999998654 6 8999999999999999987 689999998753
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.03 E-value=4.4e-11 Score=99.80 Aligned_cols=50 Identities=32% Similarity=0.604 Sum_probs=43.3
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhc-------CCCCCCCCCCcCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-------KNLCPICKTTALS 696 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~-------k~sCPiCR~~Ll~ 696 (699)
..++..|+||++.|.++. .++|||.||..||.+|+.. ...||+||+.+..
T Consensus 9 ~~~~~~C~IC~~~~~~p~---~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPL---SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSCC---CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCee---ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 355678999999998876 6899999999999999986 5679999998754
No 32
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.02 E-value=1.5e-10 Score=99.75 Aligned_cols=49 Identities=24% Similarity=0.744 Sum_probs=42.3
Q ss_pred CCCCCCcccccccccCCCCceEEec-cCCcccHHHHHHHHhcC--CCCCCCCCCc
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILH-CGHDFHTSCIKQWLMHK--NLCPICKTTA 694 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLP-CGHiFH~~CIkqWL~~k--~sCPiCR~~L 694 (699)
...++..|+||++.|.++. .++ |||.||..||.+|+... ..||+||+.+
T Consensus 9 ~~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSCE---ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcCce---ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3456788999999998776 889 99999999999999754 5899999986
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.01 E-value=1.4e-10 Score=103.26 Aligned_cols=49 Identities=27% Similarity=0.706 Sum_probs=43.1
Q ss_pred CCCCcccccccccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iL-PCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
.++..|+||++.|.++. .+ +|||.||..||.+|+..+..||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDAT---TIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEE---EETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcC---EeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 45678999999998754 66 999999999999999999999999998764
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.01 E-value=9.6e-11 Score=102.55 Aligned_cols=48 Identities=33% Similarity=0.765 Sum_probs=41.9
Q ss_pred CCCcccccccccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 646 EQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iL-PCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
+...|+||++.|.++. .+ +|||.||..||.+|+..+..||+||+.+..
T Consensus 21 ~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAM---IIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcC---EECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 3567999999998754 55 899999999999999998999999998753
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=2.7e-10 Score=101.01 Aligned_cols=47 Identities=30% Similarity=0.601 Sum_probs=41.2
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCC---CCCCCCCCcCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN---LCPICKTTALS 696 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~---sCPiCR~~Ll~ 696 (699)
...|+||++.|.++. .++|||.||..||.+|+..+. .||+||+.+..
T Consensus 21 ~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPV---STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCC---BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeE---ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 457999999998876 689999999999999999664 79999998764
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.99 E-value=1.6e-10 Score=104.35 Aligned_cols=52 Identities=27% Similarity=0.625 Sum_probs=45.0
Q ss_pred CCCCcccccccccCCC----CceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDG----EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~----e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
.++..|+||++.|.++ ..+..++|||.||..||.+||+.+..||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 3467899999999875 344688999999999999999999999999998764
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.99 E-value=1.3e-10 Score=105.73 Aligned_cols=48 Identities=23% Similarity=0.443 Sum_probs=41.6
Q ss_pred CCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCC-CCCCCCCCcCC
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN-LCPICKTTALS 696 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~-sCPiCR~~Ll~ 696 (699)
++..|+||++.|.++. .++|||.||..||.+|+..+. .||+||+.+..
T Consensus 51 ~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPI---TTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEE---ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcE---EeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4568999999998765 789999999999999998554 89999998864
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.4e-10 Score=89.90 Aligned_cols=44 Identities=34% Similarity=0.948 Sum_probs=37.7
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHh---cCCCCCCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM---HKNLCPIC 690 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~---~k~sCPiC 690 (699)
..++..|+||++.|.++. .++|||.||..||.+|+. .+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPV---IIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCC---CCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccE---eCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345678999999998876 689999999999999954 55679998
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=4.7e-10 Score=90.94 Aligned_cols=52 Identities=23% Similarity=0.590 Sum_probs=42.1
Q ss_pred CCCccccccc-ccCCCCce-EEeccCCcccHHHHHHHHhc-CCCCCCCCCCcCCC
Q 005385 646 EQEPCCICQE-EYNDGEDT-GILHCGHDFHTSCIKQWLMH-KNLCPICKTTALST 697 (699)
Q Consensus 646 ~de~C~ICLE-ef~~~e~v-~iLPCGHiFH~~CIkqWL~~-k~sCPiCR~~Ll~t 697 (699)
++..|+||++ .|.++... ..++|||.||..||.+|+.. ...||+||+.+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 3567999999 78777643 45799999999999999775 45799999988643
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.92 E-value=3.7e-10 Score=107.17 Aligned_cols=49 Identities=20% Similarity=0.454 Sum_probs=42.2
Q ss_pred CCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCC-CCCCCCCCcCCC
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN-LCPICKTTALST 697 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~-sCPiCR~~Ll~t 697 (699)
+...|+||++.|.++. .++|||.||..||.+|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPV---TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEE---ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCE---EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3467999999998766 789999999999999999765 799999988653
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.92 E-value=4.4e-10 Score=107.03 Aligned_cols=47 Identities=26% Similarity=0.581 Sum_probs=40.7
Q ss_pred CCCcccccccccCCCCceEEe-ccCCcccHHHHHHHHhc-CCCCCCCCCCcC
Q 005385 646 EQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMH-KNLCPICKTTAL 695 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iL-PCGHiFH~~CIkqWL~~-k~sCPiCR~~Ll 695 (699)
+...|+||++.|.++. .+ +|||.||..||.+|+.. +..||+||+.+.
T Consensus 53 ~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTM---TTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEE---EETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcC---EeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 4568999999998754 55 99999999999999997 778999999874
No 42
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.88 E-value=9.6e-10 Score=94.83 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=44.2
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
.+...|+||++.|.+++ +++|||.||+.||.+||....+||+||+.+..
T Consensus 12 p~~~~CpI~~~~m~dPV---~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPV---RLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCe---ECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 45678999999999887 88999999999999999988899999998753
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.88 E-value=1.7e-10 Score=103.53 Aligned_cols=48 Identities=23% Similarity=0.549 Sum_probs=41.5
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhc-CCCCCCCCCCcC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICKTTAL 695 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~-k~sCPiCR~~Ll 695 (699)
.++..|+||++.|.++. .++|||.||..||.+|+.. +..||+||+.+.
T Consensus 13 ~~~~~C~iC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEPV---TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSCE---ECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCcee---EcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 44578999999998766 7899999999999999976 667999999864
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.86 E-value=7.5e-10 Score=100.20 Aligned_cols=51 Identities=24% Similarity=0.526 Sum_probs=43.6
Q ss_pred CCCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCC-CCCCCCCCcCC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN-LCPICKTTALS 696 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~-sCPiCR~~Ll~ 696 (699)
...++..|+||++.+.++. .++|||.||..||.+|+..+. .||+||+.+..
T Consensus 14 ~~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALREAV---QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcCeE---ECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3455678999999998764 789999999999999998765 89999998764
No 45
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=1.7e-09 Score=91.98 Aligned_cols=50 Identities=22% Similarity=0.575 Sum_probs=42.1
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcC--CCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK--NLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k--~sCPiCR~~Ll~ 696 (699)
+..+.|.||++.+..++ ....|+|.||..||.+||+.+ .+||+||+....
T Consensus 13 ~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 45678999999998655 334899999999999999977 789999998653
No 46
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.84 E-value=1.5e-09 Score=96.71 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=44.4
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
.+...|+||++.|.+++ +++|||.||+.||.+||....+||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV---~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPV---RLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEE---EETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCe---ECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 45678999999999887 89999999999999999988899999998764
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.84 E-value=1.3e-09 Score=98.36 Aligned_cols=52 Identities=27% Similarity=0.625 Sum_probs=44.8
Q ss_pred CCCCcccccccccCCC----CceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDG----EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~----e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
.+...|+||++.|.++ .....++|||.||..||.+|++.+++||+||+.+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 4567899999999764 234678999999999999999999999999998864
No 48
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.82 E-value=1.9e-09 Score=95.69 Aligned_cols=49 Identities=14% Similarity=0.073 Sum_probs=44.3
Q ss_pred CCCCcccccccccCCCCceEEeccC-CcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCG-HDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCG-HiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
.++..|+||++.|.+++ +++|| |.||+.||.+||....+||+||+++..
T Consensus 20 p~~~~CpI~~~~m~dPV---~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPV---VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCe---ECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 45678999999999887 89999 999999999999988899999998764
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.80 E-value=1.5e-09 Score=97.52 Aligned_cols=47 Identities=28% Similarity=0.579 Sum_probs=41.4
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHhc-CCCCCCCCCCcCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICKTTALS 696 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~-k~sCPiCR~~Ll~ 696 (699)
+..|+||++.|.++. .++|||.||..||.+|+.. ...||+||+.+..
T Consensus 23 ~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADPV---ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCcE---EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 467999999997765 6899999999999999997 6789999998764
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.80 E-value=2.8e-09 Score=107.44 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=42.6
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcC-CCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK-NLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k-~sCPiCR~~Ll~ 696 (699)
.....|+||++.|.+|+ +++|||+||+.||.+|+... .+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv---~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEE---ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCe---ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 45678999999999887 89999999999999999864 459999998753
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.77 E-value=2.6e-09 Score=87.48 Aligned_cols=49 Identities=31% Similarity=0.659 Sum_probs=41.2
Q ss_pred CCCCcccccccccCCCCceEEe--ccCCc-ccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGIL--HCGHD-FHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iL--PCGHi-FH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
.++..|.||++.+.+.. .+ ||||. ||..|+.+|++.+..||+||+.+..
T Consensus 6 ~~~~~C~IC~~~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGC---IVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEE---EEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEE---EECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 35568999999876543 55 99999 8999999999988899999998753
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.73 E-value=4.9e-09 Score=113.64 Aligned_cols=48 Identities=33% Similarity=0.700 Sum_probs=41.4
Q ss_pred CCCcccccccccCCCCceEEeccCCcccHHHHHHHHh-cCCCCCCCCCCcCC
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-HKNLCPICKTTALS 696 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~-~k~sCPiCR~~Ll~ 696 (699)
....|+||++.+.++ +.++|||.||..||.+|+. ....||+||+.+..
T Consensus 331 ~~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 346899999998654 4889999999999999999 67889999998754
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.72 E-value=2.4e-09 Score=85.12 Aligned_cols=46 Identities=26% Similarity=0.509 Sum_probs=39.6
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
.+...|+||++.|.++. .|+|||.||..||.+| ...||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~---~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPK---LLPCLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCS---CSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeE---EcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence 45678999999999876 8899999999999883 6689999998764
No 54
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.72 E-value=7.8e-09 Score=88.29 Aligned_cols=52 Identities=19% Similarity=0.547 Sum_probs=40.5
Q ss_pred CCCCCcccccccccCCCCceEEe--ccCCcccHHHHHHHHh-cCCCCCCCCCCcCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGIL--HCGHDFHTSCIKQWLM-HKNLCPICKTTALS 696 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iL--PCGHiFH~~CIkqWL~-~k~sCPiCR~~Ll~ 696 (699)
.+++..|+||++.+...+ +..+ +|||.||..||.+++. ....||+||+.+..
T Consensus 8 ~~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 456678999999986543 2234 4999999999999985 35679999998765
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.71 E-value=4.3e-09 Score=85.89 Aligned_cols=48 Identities=29% Similarity=0.661 Sum_probs=40.7
Q ss_pred CCCCcccccccccCCCCceEEe--ccCCc-ccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 645 QEQEPCCICQEEYNDGEDTGIL--HCGHD-FHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iL--PCGHi-FH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
.....|.||++.+.+.. .+ ||||. ||..|+.+|.+....||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGN---IIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEE---EEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeE---EEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 34568999999865544 55 99999 999999999988889999999875
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.71 E-value=1.8e-09 Score=101.50 Aligned_cols=49 Identities=18% Similarity=0.470 Sum_probs=42.3
Q ss_pred CCCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCC-CCCCCCCCc
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN-LCPICKTTA 694 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~-sCPiCR~~L 694 (699)
..+++..|+||++.|.++. .++|||.||..||.+|+.... .||+||+++
T Consensus 27 ~l~~~~~C~IC~~~~~~pv---~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPF---QAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCcE---ECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 3456778999999998875 689999999999999998665 799999975
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.69 E-value=2e-09 Score=97.24 Aligned_cols=45 Identities=27% Similarity=0.613 Sum_probs=40.1
Q ss_pred CCCcccccccccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 646 EQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iL-PCGHiFH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
+...|+||++.|.++. .+ +|||.||..||..|+. ..||+||+.+.
T Consensus 21 ~~~~C~IC~~~~~~pv---~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPV---CLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCB---CCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCcc---EeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 4567999999998876 77 9999999999999987 78999999874
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=8.6e-09 Score=90.27 Aligned_cols=46 Identities=26% Similarity=0.556 Sum_probs=39.7
Q ss_pred CCCCcccccccccCCCCceEEec-cCCcccHHHHHHHHhcC------CCCCC--CCCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILH-CGHDFHTSCIKQWLMHK------NLCPI--CKTT 693 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLP-CGHiFH~~CIkqWL~~k------~sCPi--CR~~ 693 (699)
.....|+||++.|.+++ +++ |||+||+.||.+||... .+||+ |++.
T Consensus 5 ~~~~~CPI~~~~~~dPV---~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPV---KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEE---EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCE---EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45678999999999877 885 99999999999999854 47999 9866
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.62 E-value=5.9e-09 Score=87.36 Aligned_cols=44 Identities=27% Similarity=0.576 Sum_probs=37.5
Q ss_pred CCCcccccccccCCCCceEEeccCCc-ccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHi-FH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
++..|.||++.+.+.. .++|||. ||..|+.+| ..||+||+.+..
T Consensus 23 ~~~~C~iC~~~~~~~~---~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIV---FVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEE---EETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEE---EcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 3457999999876654 7899999 999999998 789999998753
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.61 E-value=2.5e-08 Score=97.88 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=43.5
Q ss_pred CCCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcC-CCCCCCCCCcCC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK-NLCPICKTTALS 696 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k-~sCPiCR~~Ll~ 696 (699)
...+...|+||++.|.+|+ +++|||+||+.||.+||... .+||+|+.++..
T Consensus 102 ~ip~~f~CPI~~elm~DPV---~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCcHhhcccCccccCCCCe---ECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 3356778999999999877 88999999999999999864 469999998753
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.56 E-value=2.2e-08 Score=95.61 Aligned_cols=51 Identities=24% Similarity=0.526 Sum_probs=43.5
Q ss_pred CCCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCC-CCCCCCCCcCC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN-LCPICKTTALS 696 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~-sCPiCR~~Ll~ 696 (699)
...+...|+||++.|.++. .++|||+||..||.+|+..+. .||+||..+..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREAV---QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCcE---ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 4456778999999998775 689999999999999998654 89999998764
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=6.3e-08 Score=81.06 Aligned_cols=43 Identities=26% Similarity=0.569 Sum_probs=36.2
Q ss_pred CCcccccccccCCCCceEEeccCCc-ccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHi-FH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
+..|.||++.+.++. .++|||. ||..|+.+ ...||+||+.+..
T Consensus 25 ~~~C~IC~~~~~~~~---~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIV---FVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBC---CSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEE---EecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 356999999987665 7899999 99999965 3789999998764
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=1.6e-07 Score=77.87 Aligned_cols=46 Identities=24% Similarity=0.668 Sum_probs=37.5
Q ss_pred CCCCCcccccccccCCCCceEEeccCCc-ccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHi-FH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
..+...|.||++.+.+. ..+||||. ||..|+.. ...||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 34567899999986554 48899999 99999984 4789999998764
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.37 E-value=1.5e-07 Score=81.87 Aligned_cols=48 Identities=31% Similarity=0.573 Sum_probs=38.9
Q ss_pred CCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcC--------CCCCC--CCCC
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK--------NLCPI--CKTT 693 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k--------~sCPi--CR~~ 693 (699)
+...|.||++++..++.+..++|||.||..||.+++..+ ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456799999999877644444799999999999999732 35999 9987
No 65
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.33 E-value=8.8e-08 Score=102.24 Aligned_cols=52 Identities=27% Similarity=0.646 Sum_probs=39.9
Q ss_pred CCCCCcccccccccCCCCce---E--EeccCCcccHHHHHHHHhcC-----------CCCCCCCCCcC
Q 005385 644 QQEQEPCCICQEEYNDGEDT---G--ILHCGHDFHTSCIKQWLMHK-----------NLCPICKTTAL 695 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v---~--iLPCGHiFH~~CIkqWL~~k-----------~sCPiCR~~Ll 695 (699)
.+...+|+||++.+.+...+ . -.+|+|.||..||.+||+.. ..||.||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 34567899999998872311 1 23799999999999999842 35999999874
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.33 E-value=1.6e-07 Score=76.67 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=41.2
Q ss_pred CcccccccccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 648 EPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 648 e~C~ICLEef~~~e~v~iL-PCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
..|+||++.+.++. ++ +|||+|++.||.+||+.+.+||++++++..
T Consensus 4 ~~CpIs~~~m~dPV---~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPV---LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEE---EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCCE---EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 57999999998775 77 899999999999999988889999998754
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.29 E-value=1.1e-07 Score=80.96 Aligned_cols=43 Identities=30% Similarity=0.696 Sum_probs=35.7
Q ss_pred CCcccccccccCCCCceEEeccCCc-ccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHi-FH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
+..|.||++.+.+. ..+||||. ||..|+..| ..||+||+.+..
T Consensus 18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 45799999987654 48899999 999999987 389999998753
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.26 E-value=5.3e-07 Score=73.44 Aligned_cols=48 Identities=31% Similarity=0.798 Sum_probs=37.2
Q ss_pred CCCCcccccccccCCCCceEEeccC--C---cccHHHHHHHHhc--CCCCCCCCCCcC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCG--H---DFHTSCIKQWLMH--KNLCPICKTTAL 695 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCG--H---iFH~~CIkqWL~~--k~sCPiCR~~Ll 695 (699)
++...|.||+++..+ .+ ++||. | .||..||.+|+.. +.+||+||+.+.
T Consensus 4 ~~~~~CrIC~~~~~~--~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGN--ER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSC--CC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCC--ce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456789999998432 23 57865 4 8999999999984 567999999864
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.24 E-value=3e-07 Score=95.07 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=40.3
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcC--CCCCC--CCCCcC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK--NLCPI--CKTTAL 695 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k--~sCPi--CR~~Ll 695 (699)
.....|+||++.|.+++ ..+.|||.||+.||.+|+... ..||+ |++.+.
T Consensus 179 ~~el~CPIcl~~f~DPV--ts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPL--ISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEE--EESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCe--eeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 34568999999998877 234899999999999999854 36999 998764
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.16 E-value=2.6e-07 Score=98.87 Aligned_cols=44 Identities=25% Similarity=0.645 Sum_probs=37.9
Q ss_pred CCCcccccccccCCCCceEEeccCCc-ccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHi-FH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
++..|+||++.+.++. .+||||. ||..|+..| ..||+||+.+..
T Consensus 294 ~~~~C~IC~~~~~~~v---~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVV---FIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEE---EETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceE---EcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 4568999999987654 8899999 999999988 689999998753
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.73 E-value=1.5e-05 Score=71.36 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=36.6
Q ss_pred cccccccccCCCCceEEeccCCcccHHHHHHHHhc-CCCCCCCCCCcCC
Q 005385 649 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICKTTALS 696 (699)
Q Consensus 649 ~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~-k~sCPiCR~~Ll~ 696 (699)
.|.+|--.+. ...+.+||+|+||++|+..|.+. .+.||+|+.++..
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4888865553 34467799999999999999864 5789999998864
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.30 E-value=9e-05 Score=75.48 Aligned_cols=48 Identities=23% Similarity=0.598 Sum_probs=39.2
Q ss_pred CCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCC--CCCCCCCCcC
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN--LCPICKTTAL 695 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~--sCPiCR~~Ll 695 (699)
....|.||.+....+. ++-.|+|.||..|+.+|++.+. .||.|++...
T Consensus 179 ~i~~C~iC~~iv~~g~--~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCE--ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCc--ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 4678999999988654 3445999999999999998654 7999998644
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.00 E-value=0.0081 Score=53.33 Aligned_cols=47 Identities=28% Similarity=0.576 Sum_probs=37.9
Q ss_pred CCCCcccccccccCCCCceEEeccC-CcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCG-HDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCG-HiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
-.-..|-.|.-+ +.. .+.|. |.+|..|+.-.|.....||+|+++++.
T Consensus 26 ~G~~nCKsCWf~--~k~---LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFE--NKG---LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSC--CSS---EEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred cCcccChhhccc--cCC---eeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 345679999754 333 55676 999999999999999999999998875
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.91 E-value=0.03 Score=48.64 Aligned_cols=34 Identities=15% Similarity=0.445 Sum_probs=26.9
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHH
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQW 680 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqW 680 (699)
+..|.||.+.|..+.....+.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4679999987544444455899999999999983
No 75
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.26 E-value=0.54 Score=56.34 Aligned_cols=51 Identities=16% Similarity=0.099 Sum_probs=44.0
Q ss_pred CCCCCCcccccccccCCCCceEEeccC-CcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILHCG-HDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLPCG-HiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
..-+...|+|-++.+.+|+ +++.| ++|-+.+|.+||....+||+=|.++..
T Consensus 887 ~iP~~F~cPIs~~lM~DPV---ilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPV---ILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcHHhCCcchhhHHhCCe---EcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 3345678999999999887 89997 699999999999998899999988754
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=89.85 E-value=0.21 Score=41.31 Aligned_cols=48 Identities=19% Similarity=0.399 Sum_probs=34.1
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCC----CCCCCCCCcC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN----LCPICKTTAL 695 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~----sCPiCR~~Ll 695 (699)
.....|.||.+. ++.+..-.|...||..|+...|.... .||.|+....
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 345679999753 44333347999999999988876432 4999987543
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=87.56 E-value=0.29 Score=52.96 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=34.1
Q ss_pred CCcccccccccCCCCceEEeccCCc--ccHHHHHHHHhcC--CCCCCCCCCcCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHD--FHTSCIKQWLMHK--NLCPICKTTALS 696 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHi--FH~~CIkqWL~~k--~sCPiCR~~Ll~ 696 (699)
...|+|-+..+..+. +-..|.|+ |-..-+.+....+ -.||+|.+.+..
T Consensus 249 SL~CPlS~~ri~~Pv--Rg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMKYPS--KSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCSSEE--EETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCccccccccC--cCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 467999888877665 55689999 6666666555433 349999987743
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.32 E-value=0.54 Score=41.06 Aligned_cols=37 Identities=19% Similarity=0.476 Sum_probs=26.2
Q ss_pred CCCCCCcccccccccCCCCceEEeccCCcccHHHHHHH
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQW 680 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqW 680 (699)
....++.|.||- .|...+..-.--|+-.||..|+++.
T Consensus 11 ~~~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccc-cccccceeccccccccccHhhcccc
Confidence 334678899994 4455553333358999999999996
No 79
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=83.18 E-value=0.65 Score=50.06 Aligned_cols=48 Identities=21% Similarity=0.343 Sum_probs=34.9
Q ss_pred CCcccccccccCCCCceEEeccCCc--ccHHHHHHHHhcCC--CCCCCCCCcCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHD--FHTSCIKQWLMHKN--LCPICKTTALS 696 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHi--FH~~CIkqWL~~k~--sCPiCR~~Ll~ 696 (699)
...|+|-+..+..+. +-..|.|+ |-..-+.+....+. .||+|.+.+..
T Consensus 215 SL~CPlS~~ri~~P~--Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPC--RAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSEE--EETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccCC--cCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 457999888877665 55689999 77666666555433 49999998753
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=79.90 E-value=0.78 Score=37.04 Aligned_cols=47 Identities=28% Similarity=0.596 Sum_probs=32.4
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhc----CCCCCCCCCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKTT 693 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~----k~sCPiCR~~ 693 (699)
...+..|.||.+. ++.+..-.|.-.||..|+..-+.. +-.||.|++.
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456789999863 443333368899999999875542 2249999864
No 81
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=79.37 E-value=0.36 Score=38.92 Aligned_cols=53 Identities=25% Similarity=0.432 Sum_probs=35.8
Q ss_pred CCCCCcccccccccCCCC-ceEEeccCCcccHHHHHHHHh-----cCCCCCCCCCCcCC
Q 005385 644 QQEQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLM-----HKNLCPICKTTALS 696 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e-~v~iLPCGHiFH~~CIkqWL~-----~k~sCPiCR~~Ll~ 696 (699)
.++...|+||...+.+.. .+..-.|..-||..|+.--.. .+..||.|+..-..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~ 61 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP 61 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCC
Confidence 345677999999886444 333347999999999854322 33459999865443
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=79.35 E-value=0.77 Score=35.38 Aligned_cols=44 Identities=25% Similarity=0.595 Sum_probs=29.5
Q ss_pred cccccccccCCCCceEEeccCCcccHHHHHHHHhcC----CCCCCCCC
Q 005385 649 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK----NLCPICKT 692 (699)
Q Consensus 649 ~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k----~sCPiCR~ 692 (699)
.|.||...-.....+..-.|...||..|+..=|... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 489998764333433333799999999997544322 24999975
No 83
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=76.17 E-value=0.59 Score=38.81 Aligned_cols=51 Identities=18% Similarity=0.369 Sum_probs=33.8
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhc----CCCCCCCCCCcC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKTTAL 695 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~----k~sCPiCR~~Ll 695 (699)
.+...|.||.........+..-.|.-.||..|+..-+.. .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 445679999877543232333369999999999754432 335999987654
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=74.78 E-value=0.55 Score=37.95 Aligned_cols=50 Identities=30% Similarity=0.630 Sum_probs=33.8
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhc----CCCCCCCCCCcCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKTTALS 696 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~----k~sCPiCR~~Ll~ 696 (699)
...+..|.||.+. ++.+..-.|...||..|+..-|.. .-.||.|+...+.
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k 59 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 59 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCT
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhc
Confidence 3456779999753 343333368899999999865442 2249999876553
No 85
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=72.68 E-value=3.2 Score=36.06 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=30.6
Q ss_pred CCCCcccccccccCCCCceEEe-ccCCcccHHHHHHHHhcC
Q 005385 645 QEQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHK 684 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iL-PCGHiFH~~CIkqWL~~k 684 (699)
.....|.+|.|.+++..-+.+- -=.|.||.-|-+..++.+
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 4567899999999998843322 136999999999999743
No 86
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.57 E-value=0.37 Score=38.13 Aligned_cols=47 Identities=23% Similarity=0.598 Sum_probs=31.9
Q ss_pred CCCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcC----CCCCCCCC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK----NLCPICKT 692 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k----~sCPiCR~ 692 (699)
....+..|.||.+. ++.+..-.|...||..|+..-|... -.||.|+.
T Consensus 5 ~~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34566789999864 4433344799999999998654422 23888864
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=68.15 E-value=1.2 Score=39.52 Aligned_cols=38 Identities=16% Similarity=0.420 Sum_probs=27.5
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHh
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM 682 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~ 682 (699)
..+..|.||.+.-...+.+..-.|...||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 45678999987643333344457999999999987664
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=66.78 E-value=4.2 Score=34.12 Aligned_cols=46 Identities=26% Similarity=0.471 Sum_probs=30.6
Q ss_pred CcccccccccCCCC-ceEEeccCCcccHHHHHHHHh-----cCCCCCCCCCCc
Q 005385 648 EPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLM-----HKNLCPICKTTA 694 (699)
Q Consensus 648 e~C~ICLEef~~~e-~v~iLPCGHiFH~~CIkqWL~-----~k~sCPiCR~~L 694 (699)
..| ||...+.+.. .+..-.|..-||..|+.--.. .+..||.|+...
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 345 9998875333 334447999999999942211 344699999764
No 89
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=62.95 E-value=8.4 Score=34.36 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=23.0
Q ss_pred CCCcccccccccC------CCCceEEeccCCcccHHHHH
Q 005385 646 EQEPCCICQEEYN------DGEDTGILHCGHDFHTSCIK 678 (699)
Q Consensus 646 ~de~C~ICLEef~------~~e~v~iLPCGHiFH~~CIk 678 (699)
....|.||+..-. .++.+....|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 4567999987631 22334445799999999995
No 90
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.50 E-value=2.1 Score=35.64 Aligned_cols=49 Identities=24% Similarity=0.454 Sum_probs=32.9
Q ss_pred CcccccccccCCCCceEEeccCCcccHHHHHHH------H---hcCCCCCCCCCCcCCC
Q 005385 648 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQW------L---MHKNLCPICKTTALST 697 (699)
Q Consensus 648 e~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqW------L---~~k~sCPiCR~~Ll~t 697 (699)
..| ||...+.....+..-.|..-||..|+.-- | ..+..||.|+..-.+.
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p~ 74 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPS 74 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCSS
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCcC
Confidence 345 99988764444444479999999998421 1 2466799998765443
No 91
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=61.01 E-value=2.2 Score=35.65 Aligned_cols=49 Identities=20% Similarity=0.385 Sum_probs=31.0
Q ss_pred CCCCCccccccccc-CCCCce-EEeccCCcccHHHHHHHHhc--CCCCCCCCC
Q 005385 644 QQEQEPCCICQEEY-NDGEDT-GILHCGHDFHTSCIKQWLMH--KNLCPICKT 692 (699)
Q Consensus 644 ~e~de~C~ICLEef-~~~e~v-~iLPCGHiFH~~CIkqWL~~--k~sCPiCR~ 692 (699)
...+..|.||.+.- .+...+ ..=.|.-.||..|+..-... .-.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34567899998763 222222 22269999999999753322 224888864
No 92
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=60.84 E-value=2.5 Score=37.19 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=30.6
Q ss_pred CcccccccccCCCCceEEeccCCcccHHHHHHHHh---cCCCCCCCCCC
Q 005385 648 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM---HKNLCPICKTT 693 (699)
Q Consensus 648 e~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~---~k~sCPiCR~~ 693 (699)
..| ||......+..+..-.|.-.||..|+..-+. ....||.|+..
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 346 8987766555444447999999999865332 12359999854
No 93
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=60.43 E-value=6.1 Score=30.65 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=29.0
Q ss_pred cccccccccCCCCce-EEe-ccCCcccHHHHHHH----HhcCCCCCCCC
Q 005385 649 PCCICQEEYNDGEDT-GIL-HCGHDFHTSCIKQW----LMHKNLCPICK 691 (699)
Q Consensus 649 ~C~ICLEef~~~e~v-~iL-PCGHiFH~~CIkqW----L~~k~sCPiCR 691 (699)
.|.||...+.++... ..- .|.--||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 588999988655433 333 58889999997421 13566799996
No 94
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=60.23 E-value=3 Score=36.50 Aligned_cols=47 Identities=23% Similarity=0.496 Sum_probs=32.6
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcC----CCCCCCCCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK----NLCPICKTT 693 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k----~sCPiCR~~ 693 (699)
...+..|.||.+. ++.+..-.|--.||..|+.+=|... -.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3456789999864 4433333688899999997765432 249999864
No 95
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=59.78 E-value=4.1 Score=34.02 Aligned_cols=34 Identities=24% Similarity=0.605 Sum_probs=26.7
Q ss_pred CCCCCcccccccccCCCCceEEecc-CCcccHHHHHHHH
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHC-GHDFHTSCIKQWL 681 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPC-GHiFH~~CIkqWL 681 (699)
.++..-|.||.++ ..++.+.| +-+||..|.++.-
T Consensus 5 ~ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHHT
T ss_pred CcCCCeeEEeCCC----CeEEecCCCCceehHHHHHHHc
Confidence 3455679999887 34778899 8999999988754
No 96
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=58.79 E-value=3 Score=33.94 Aligned_cols=43 Identities=26% Similarity=0.361 Sum_probs=31.1
Q ss_pred CcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCC
Q 005385 648 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPIC 690 (699)
Q Consensus 648 e~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiC 690 (699)
..|--|+..|.+........|++.||.+|=.=.-+.-+.||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999998644334456799999999965433455679988
No 97
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.42 E-value=0.62 Score=40.74 Aligned_cols=48 Identities=21% Similarity=0.379 Sum_probs=31.7
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhc----CCCCCCCCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKT 692 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~----k~sCPiCR~ 692 (699)
.++..|.||...-.....+..-.|...||..|+..=|.. .-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 455679999876433333333379999999999754432 224999975
No 98
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=58.26 E-value=2.3 Score=35.74 Aligned_cols=50 Identities=18% Similarity=0.340 Sum_probs=33.0
Q ss_pred CCcccccccccCCCCceEEe--ccCCcccHHHHHHHH---------hcCCCCCCCCCCcCCC
Q 005385 647 QEPCCICQEEYNDGEDTGIL--HCGHDFHTSCIKQWL---------MHKNLCPICKTTALST 697 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iL--PCGHiFH~~CIkqWL---------~~k~sCPiCR~~Ll~t 697 (699)
...| ||......+..+..= .|..-||..|+.--- ..+..||.|+..-.+.
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCC
Confidence 3456 898875555544444 699999999995311 1244699998765543
No 99
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=57.17 E-value=11 Score=35.66 Aligned_cols=47 Identities=28% Similarity=0.510 Sum_probs=32.4
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHHh-----------cCCCCCCCCCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-----------HKNLCPICKTT 693 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~-----------~k~sCPiCR~~ 693 (699)
...++.|.||.+- ++.+-.-.|--.||..||.+-|. ..-.||+|+..
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4456789999654 44332337889999999997652 12349999864
No 100
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.17 E-value=4.8 Score=35.29 Aligned_cols=46 Identities=30% Similarity=0.666 Sum_probs=29.1
Q ss_pred CCcccccccccCCCCceEEec--cC-CcccHHHHHHHHhc----CCCCCCCCCCcCC
Q 005385 647 QEPCCICQEEYNDGEDTGILH--CG-HDFHTSCIKQWLMH----KNLCPICKTTALS 696 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLP--CG-HiFH~~CIkqWL~~----k~sCPiCR~~Ll~ 696 (699)
...| ||..... +..+..=. |. ..||..|+. |.. +-.||.|+.....
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~k 88 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 88 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCSS
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCCc
Confidence 3445 9988653 44333334 65 689999997 332 2359999876544
No 101
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=55.94 E-value=16 Score=32.21 Aligned_cols=50 Identities=24% Similarity=0.424 Sum_probs=36.0
Q ss_pred CCCcccccccccCCCC--c--eEEeccCCcccHHHHHHHHh-cCCCCCCCCCCcC
Q 005385 646 EQEPCCICQEEYNDGE--D--TGILHCGHDFHTSCIKQWLM-HKNLCPICKTTAL 695 (699)
Q Consensus 646 ~de~C~ICLEef~~~e--~--v~iLPCGHiFH~~CIkqWL~-~k~sCPiCR~~Ll 695 (699)
....|.||-+++...+ + +.+-.|+--.|+.|.+-=.+ ....||.|++...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3468999999965433 1 23336888889999976444 4567999999876
No 102
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=55.08 E-value=3.5 Score=35.67 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=31.6
Q ss_pred CCCCcccccccccCC-C-CceEEeccCCcccHHHHHHHHhc--CCCCCCCCCCc
Q 005385 645 QEQEPCCICQEEYND-G-EDTGILHCGHDFHTSCIKQWLMH--KNLCPICKTTA 694 (699)
Q Consensus 645 e~de~C~ICLEef~~-~-e~v~iLPCGHiFH~~CIkqWL~~--k~sCPiCR~~L 694 (699)
+.+..|.||...-.. . ..+..-.|.-.||..|+..-+.. .-.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 456789999875322 2 22222268899999999754322 22499997643
No 103
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=54.60 E-value=5.6 Score=33.12 Aligned_cols=45 Identities=31% Similarity=0.678 Sum_probs=28.2
Q ss_pred CCcccccccccCCCCceEEec--cC-CcccHHHHHHHHhc----CCCCCCCCCCcC
Q 005385 647 QEPCCICQEEYNDGEDTGILH--CG-HDFHTSCIKQWLMH----KNLCPICKTTAL 695 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLP--CG-HiFH~~CIkqWL~~----k~sCPiCR~~Ll 695 (699)
...| ||..... +..+..=. |. ..||..|+. |.. +-.||.|+....
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 4456 8988643 44222224 66 689999997 432 234999987654
No 104
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=54.26 E-value=9.3 Score=31.28 Aligned_cols=34 Identities=35% Similarity=0.659 Sum_probs=23.7
Q ss_pred CCCCCcccccccccCCCCceE-Ee-ccCCcccHHHH
Q 005385 644 QQEQEPCCICQEEYNDGEDTG-IL-HCGHDFHTSCI 677 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~-iL-PCGHiFH~~CI 677 (699)
.+....|.+|...+.+....+ .- .|.--||..|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 345678999999987665433 33 68899999998
No 105
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=52.99 E-value=1.1 Score=38.89 Aligned_cols=50 Identities=16% Similarity=0.354 Sum_probs=32.2
Q ss_pred CCCcccccccccCC--CCceEEeccCCcccHHHHHHHHh--------cCCCCCCCCCCcC
Q 005385 646 EQEPCCICQEEYND--GEDTGILHCGHDFHTSCIKQWLM--------HKNLCPICKTTAL 695 (699)
Q Consensus 646 ~de~C~ICLEef~~--~e~v~iLPCGHiFH~~CIkqWL~--------~k~sCPiCR~~Ll 695 (699)
.+..|.||...-.. ...+..=.|...||..|+..-|. ..-.|+.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 35679999876432 22222226999999999986543 1234999976443
No 106
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=51.38 E-value=1.4 Score=35.89 Aligned_cols=46 Identities=24% Similarity=0.600 Sum_probs=31.4
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhc----CCCCCCCCCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKTT 693 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~----k~sCPiCR~~ 693 (699)
..+..|.||.+. ++.+..-.|.-.||..|+..-|.. .-.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 456789999864 443333379899999999864432 2249999754
No 107
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=51.31 E-value=6.7 Score=36.55 Aligned_cols=34 Identities=18% Similarity=0.384 Sum_probs=25.2
Q ss_pred CCCCcccccccccCC--CCceEEeccCCcccHHHHH
Q 005385 645 QEQEPCCICQEEYND--GEDTGILHCGHDFHTSCIK 678 (699)
Q Consensus 645 e~de~C~ICLEef~~--~e~v~iLPCGHiFH~~CIk 678 (699)
..+..|.+|...|.. +....+..|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 456789999999942 2334455899999999864
No 108
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=50.46 E-value=6.7 Score=31.51 Aligned_cols=51 Identities=31% Similarity=0.611 Sum_probs=33.6
Q ss_pred CCCCcccccccccCC--CCceEEeccCCcccHHHHHHHHh-------cCCCCCCCCCCcC
Q 005385 645 QEQEPCCICQEEYND--GEDTGILHCGHDFHTSCIKQWLM-------HKNLCPICKTTAL 695 (699)
Q Consensus 645 e~de~C~ICLEef~~--~e~v~iLPCGHiFH~~CIkqWL~-------~k~sCPiCR~~Ll 695 (699)
..+..|.||...... ...+..-.|.-.||..|+..-|. ..-.|+.|+....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 456789999976543 23222237999999999986331 2335999976543
No 109
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=50.39 E-value=1 Score=37.24 Aligned_cols=52 Identities=31% Similarity=0.387 Sum_probs=34.2
Q ss_pred CCCcccccccccCCCC-ceEEeccCCcccHHHHHHHH----hcCCCCCCCCCCcCCCC
Q 005385 646 EQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWL----MHKNLCPICKTTALSTS 698 (699)
Q Consensus 646 ~de~C~ICLEef~~~e-~v~iLPCGHiFH~~CIkqWL----~~k~sCPiCR~~Ll~tS 698 (699)
....| ||...+.++. .+..-.|..-||..|+.--- ..+..||.|+..-.++|
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~pss 71 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPSS 71 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSSCC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCCCC
Confidence 34568 7988765554 33444799999999985421 13345999987665544
No 110
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=50.03 E-value=1.7 Score=34.66 Aligned_cols=46 Identities=22% Similarity=0.600 Sum_probs=31.4
Q ss_pred CCCcccccccccCCCCceEEeccCCcccHHHHHHHHhc----CCCCCCCCCCc
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKTTA 694 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~----k~sCPiCR~~L 694 (699)
.+..|.||... ++.+..-.|.-.||..|+..-|.. .-.||.|....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 45789999864 443444479999999999865442 22499987543
No 111
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=47.30 E-value=17 Score=34.61 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=25.2
Q ss_pred CCCCcccccccccCC--CCceEEeccCCcccHHHH
Q 005385 645 QEQEPCCICQEEYND--GEDTGILHCGHDFHTSCI 677 (699)
Q Consensus 645 e~de~C~ICLEef~~--~e~v~iLPCGHiFH~~CI 677 (699)
..+..|.+|...|.. +....+..|.|.+|..|-
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 356789999998643 334455689999999997
No 112
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=47.04 E-value=3.7 Score=38.91 Aligned_cols=46 Identities=22% Similarity=0.636 Sum_probs=30.6
Q ss_pred CCCcccccccccCCCC-ceEEeccCCcccHHHHHHHH-----hcCCCCCCCCC
Q 005385 646 EQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWL-----MHKNLCPICKT 692 (699)
Q Consensus 646 ~de~C~ICLEef~~~e-~v~iLPCGHiFH~~CIkqWL-----~~k~sCPiCR~ 692 (699)
....| ||...+.+.. .+.+-.|...||..|+.--. ...-.||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 44568 9998875443 33444799999999995221 12446999975
No 113
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=44.90 E-value=4.1 Score=36.38 Aligned_cols=45 Identities=22% Similarity=0.561 Sum_probs=29.6
Q ss_pred CcccccccccCC-CCceEEeccCCcccHHHHHHHHhcC----CCCCCCCC
Q 005385 648 EPCCICQEEYND-GEDTGILHCGHDFHTSCIKQWLMHK----NLCPICKT 692 (699)
Q Consensus 648 e~C~ICLEef~~-~e~v~iLPCGHiFH~~CIkqWL~~k----~sCPiCR~ 692 (699)
..|.||.+.-.+ ...+..-.|...||..|+..-|... -.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 368899865322 2322233699999999997655422 24999985
No 114
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=43.68 E-value=20 Score=33.39 Aligned_cols=47 Identities=28% Similarity=0.507 Sum_probs=30.8
Q ss_pred CCCCCcccccccccCCCCceEEeccCCcccHHHHHHHH------hc-----CCCCCCCCCC
Q 005385 644 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWL------MH-----KNLCPICKTT 693 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL------~~-----k~sCPiCR~~ 693 (699)
...++.|.||.+- ++.+-.=.|-..||.+||.+-+ +. .-.|++|+..
T Consensus 54 Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4456779999653 3322222688999999999752 11 2359999764
No 115
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=43.00 E-value=2.7 Score=34.68 Aligned_cols=47 Identities=21% Similarity=0.410 Sum_probs=30.5
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHh---cCCCCCCCCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM---HKNLCPICKT 692 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~---~k~sCPiCR~ 692 (699)
.+...| ||...+.....+..-.|..-||..|+.---. .+..||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344567 9988765333444447999999999954221 2345999875
No 116
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=42.57 E-value=2.6 Score=35.75 Aligned_cols=44 Identities=23% Similarity=0.563 Sum_probs=27.5
Q ss_pred cccccccccCCCCceEEeccCCcccHHHHHHHHhcC-----CCCCCCCC
Q 005385 649 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK-----NLCPICKT 692 (699)
Q Consensus 649 ~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k-----~sCPiCR~ 692 (699)
.|.||...-.....+..-.|...||..|+..-|... -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 577776653323322222688999999998665421 35999986
No 117
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=41.95 E-value=4.2 Score=41.22 Aligned_cols=47 Identities=21% Similarity=0.516 Sum_probs=27.2
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHhc-----CCCCCCCCCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-----KNLCPICKTT 693 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~-----k~sCPiCR~~ 693 (699)
+..|.||...-..+..+.+=.|...||..|+.+=|.. .-.||.|+..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3468889765333333333379999999999865542 2249999764
No 118
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.16 E-value=4.9 Score=34.01 Aligned_cols=46 Identities=24% Similarity=0.481 Sum_probs=29.9
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHhc-----CCCCCCCCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-----KNLCPICKT 692 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~-----k~sCPiCR~ 692 (699)
+..|.||...-..+..+..-.|...||..|+..=|.. .-.||.|..
T Consensus 26 ~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3478899865333342222369999999999854442 234999975
No 119
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=40.88 E-value=3.2 Score=36.82 Aligned_cols=49 Identities=18% Similarity=0.402 Sum_probs=31.0
Q ss_pred cccccccccCCCCceEEeccCCcccHHHHHHHHhc----CCCCCCCCCCcCCC
Q 005385 649 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKTTALST 697 (699)
Q Consensus 649 ~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~----k~sCPiCR~~Ll~t 697 (699)
.|.||...-.+...+..-.|...||..|+..-|.. .-.||.|+.-....
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~g~ 108 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICISGP 108 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSCSC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcCCCC
Confidence 57788766433332333379999999999865542 22499887654433
No 120
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=40.74 E-value=5.8 Score=42.33 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=0.0
Q ss_pred CCCCcccccccccCCCC-ceEEeccCCcccHHHHHHHHhc-------CCCCCCCCCCc
Q 005385 645 QEQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLMH-------KNLCPICKTTA 694 (699)
Q Consensus 645 e~de~C~ICLEef~~~e-~v~iLPCGHiFH~~CIkqWL~~-------k~sCPiCR~~L 694 (699)
.+...|.+|...|..-. ...+-.||++||..|...++.. ...|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 34567999999886433 2335579999999999876531 23477776554
No 121
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=39.10 E-value=17 Score=30.82 Aligned_cols=39 Identities=13% Similarity=0.330 Sum_probs=28.2
Q ss_pred CCCCCCCcccccccccCCCCc-eEEeccCCcccHHHHHHH
Q 005385 642 GSQQEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQW 680 (699)
Q Consensus 642 ~s~e~de~C~ICLEef~~~e~-v~iLPCGHiFH~~CIkqW 680 (699)
....+...|.+|...|..-.. ...-.||++||..|....
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 344556789999999976542 233479999999997654
No 122
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=37.94 E-value=13 Score=31.52 Aligned_cols=37 Identities=24% Similarity=0.564 Sum_probs=26.8
Q ss_pred CCCCCcccccccccCCCCc-eEEeccCCcccHHHHHHH
Q 005385 644 QQEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQW 680 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~-v~iLPCGHiFH~~CIkqW 680 (699)
..+...|.+|...|..-.. ...-.||.+||..|....
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3455679999999975442 233479999999998653
No 123
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=35.82 E-value=15 Score=31.68 Aligned_cols=37 Identities=22% Similarity=0.413 Sum_probs=27.1
Q ss_pred CCCCcccccccccCCCC-ceEEeccCCcccHHHHHHHH
Q 005385 645 QEQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWL 681 (699)
Q Consensus 645 e~de~C~ICLEef~~~e-~v~iLPCGHiFH~~CIkqWL 681 (699)
.+...|.+|...|..-. +...-.||++||..|...++
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 34567999999987543 23344799999999986653
No 124
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=34.93 E-value=5.2 Score=33.15 Aligned_cols=45 Identities=22% Similarity=0.572 Sum_probs=28.0
Q ss_pred cccccccccCCCCceEEeccCCcccHHHHHHHHhc-----CCCCCCCCCC
Q 005385 649 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-----KNLCPICKTT 693 (699)
Q Consensus 649 ~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~-----k~sCPiCR~~ 693 (699)
.|.||...-..+..+..-.|...||..|+..=|.. .-.||.|+..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 56788754222332222268899999999855442 2359999864
No 125
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=34.18 E-value=20 Score=30.82 Aligned_cols=37 Identities=19% Similarity=0.448 Sum_probs=26.3
Q ss_pred CCCCCcccccccccCCCCc-eEEeccCCcccHHHHHHH
Q 005385 644 QQEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQW 680 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~-v~iLPCGHiFH~~CIkqW 680 (699)
..+...|.+|...|..-.. -..-.||++||..|....
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 3455689999999875542 233479999999997553
No 126
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=33.74 E-value=1.7 Score=39.06 Aligned_cols=49 Identities=18% Similarity=0.418 Sum_probs=31.9
Q ss_pred CcccccccccCCCCceEEeccCCcccHHHHHHHHhc----CCCCCCCCCCcCC
Q 005385 648 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKTTALS 696 (699)
Q Consensus 648 e~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~----k~sCPiCR~~Ll~ 696 (699)
..|.||...-..+..+..-.|...||..|+..=|.. .-.||.|+..+..
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 368899776444443333379999999999864432 2239988765443
No 127
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=33.74 E-value=16 Score=33.34 Aligned_cols=37 Identities=19% Similarity=0.455 Sum_probs=26.8
Q ss_pred CCCCCcccccccccCCCCc-eEEeccCCcccHHHHHHH
Q 005385 644 QQEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQW 680 (699)
Q Consensus 644 ~e~de~C~ICLEef~~~e~-v~iLPCGHiFH~~CIkqW 680 (699)
..+...|.+|...|..-.. ...-.||++||..|....
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3445689999999975432 234479999999997654
No 128
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.71 E-value=20 Score=30.33 Aligned_cols=38 Identities=16% Similarity=0.401 Sum_probs=26.9
Q ss_pred CCCCCCcccccccccCCCCc-eEEeccCCcccHHHHHHH
Q 005385 643 SQQEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQW 680 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~-v~iLPCGHiFH~~CIkqW 680 (699)
.+.+...|.+|...|..-.. -..-.||.+||..|....
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 33455689999999965432 233479999999997543
No 129
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=33.26 E-value=18 Score=32.17 Aligned_cols=49 Identities=31% Similarity=0.563 Sum_probs=32.9
Q ss_pred CCcccccccccCCCCceEEe--ccCCcccHHHHHHH------Hh----cCCCCCCCCCCcC
Q 005385 647 QEPCCICQEEYNDGEDTGIL--HCGHDFHTSCIKQW------LM----HKNLCPICKTTAL 695 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iL--PCGHiFH~~CIkqW------L~----~k~sCPiCR~~Ll 695 (699)
...|.||...|.+....+.- .|.--||..|+.-- |. .+-.||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 35799999998665443333 58889999998421 10 3346999986543
No 130
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=33.18 E-value=18 Score=32.29 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=22.6
Q ss_pred CcccccccccCC-------CCceEEeccCCcccHHHHHHH
Q 005385 648 EPCCICQEEYND-------GEDTGILHCGHDFHTSCIKQW 680 (699)
Q Consensus 648 e~C~ICLEef~~-------~e~v~iLPCGHiFH~~CIkqW 680 (699)
..|.||+..-.. ++.+....|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 469999876421 133344479999999998754
No 131
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=32.52 E-value=14 Score=36.75 Aligned_cols=35 Identities=20% Similarity=0.529 Sum_probs=26.3
Q ss_pred CCCcccccccccCCCC-ceEEeccCCcccHHHHHHH
Q 005385 646 EQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQW 680 (699)
Q Consensus 646 ~de~C~ICLEef~~~e-~v~iLPCGHiFH~~CIkqW 680 (699)
++..|.+|...|..-. +..+-.||++||..|....
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 3568999999987544 2334579999999997654
No 132
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=32.12 E-value=27 Score=38.01 Aligned_cols=48 Identities=17% Similarity=0.344 Sum_probs=33.2
Q ss_pred CCCCCCcccccccccCCCCceEEe--ccCCcccHHHHHHHHh----------cCCCCCCCCCC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGIL--HCGHDFHTSCIKQWLM----------HKNLCPICKTT 693 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iL--PCGHiFH~~CIkqWL~----------~k~sCPiCR~~ 693 (699)
....+..|.||-+- ++.+.+= .|...||..||+..+- .+-.|=+|.-.
T Consensus 89 ~DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 89 DDGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 34456789999754 4433444 6999999999999982 22348888754
No 133
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=31.90 E-value=3.7 Score=37.73 Aligned_cols=46 Identities=22% Similarity=0.548 Sum_probs=28.8
Q ss_pred CCCcccccccccCCCC-ceEEeccCCcccHHHHHHHHhcCCCCCCCC
Q 005385 646 EQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLMHKNLCPICK 691 (699)
Q Consensus 646 ~de~C~ICLEef~~~e-~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR 691 (699)
....|.+|...|..-. +-..-.||.+||..|....+.....|-.|-
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 4467999999987543 223457999999999766554444565553
No 134
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.38 E-value=15 Score=36.29 Aligned_cols=35 Identities=20% Similarity=0.486 Sum_probs=25.9
Q ss_pred CCCcccccccccCCCC-ceEEeccCCcccHHHHHHH
Q 005385 646 EQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQW 680 (699)
Q Consensus 646 ~de~C~ICLEef~~~e-~v~iLPCGHiFH~~CIkqW 680 (699)
++..|.+|...|..-. +..+-.||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 3578999999987543 2234479999999997653
No 135
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=28.94 E-value=26 Score=28.90 Aligned_cols=33 Identities=18% Similarity=0.428 Sum_probs=24.2
Q ss_pred CCcccccccccCCCCc-eEEeccCCcccHHHHHH
Q 005385 647 QEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQ 679 (699)
Q Consensus 647 de~C~ICLEef~~~e~-v~iLPCGHiFH~~CIkq 679 (699)
+..|.+|...|..-.. -..-.||.+||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3579999999875432 22347999999999754
No 136
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=28.54 E-value=5.2 Score=32.11 Aligned_cols=42 Identities=33% Similarity=0.725 Sum_probs=25.9
Q ss_pred CCcccccccccCCCCceEEec--cC-CcccHHHHHHHHhc----CCCCCCCCC
Q 005385 647 QEPCCICQEEYNDGEDTGILH--CG-HDFHTSCIKQWLMH----KNLCPICKT 692 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLP--CG-HiFH~~CIkqWL~~----k~sCPiCR~ 692 (699)
...| ||.... .+..+..=. |. ..||..|+. |.. +-.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3445 998864 243222224 66 689999997 332 234999975
No 137
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=28.46 E-value=9.3 Score=34.50 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=16.0
Q ss_pred EeccCCcccHHHHHHHHhcCCCCCCCCCCc
Q 005385 665 ILHCGHDFHTSCIKQWLMHKNLCPICKTTA 694 (699)
Q Consensus 665 iLPCGHiFH~~CIkqWL~~k~sCPiCR~~L 694 (699)
+..||+.|. .-+.....||.|+..-
T Consensus 70 C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 70 CRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 566999981 1122345699999754
No 138
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.29 E-value=44 Score=27.78 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=27.0
Q ss_pred CCCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 645 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
.....|..|.+.+.... +..-+..||.+|. .|-.|++.|..
T Consensus 23 ~~~~~C~~C~~~I~~~~---~~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAV---VKARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCSCC---EESSSCEECTTTC--------CCSSSCCCTTT
T ss_pred CcCCCcccCCCEecccE---EEECCceECccCC--------EecCCCCCCCC
Confidence 34467888888776422 3346677887774 47788777654
No 139
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=27.87 E-value=22 Score=31.93 Aligned_cols=11 Identities=27% Similarity=1.029 Sum_probs=10.4
Q ss_pred ccHHHHHHHHh
Q 005385 672 FHTSCIKQWLM 682 (699)
Q Consensus 672 FH~~CIkqWL~ 682 (699)
||+.|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 140
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=27.66 E-value=21 Score=41.91 Aligned_cols=50 Identities=22% Similarity=0.470 Sum_probs=36.1
Q ss_pred CCCCcccccccccCCCCc-------eEEeccCCcc--------------------cHHHHHHHHhcC--------CCCCC
Q 005385 645 QEQEPCCICQEEYNDGED-------TGILHCGHDF--------------------HTSCIKQWLMHK--------NLCPI 689 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~-------v~iLPCGHiF--------------------H~~CIkqWL~~k--------~sCPi 689 (699)
-+.-.|.-|+.|+.++.+ +-++.||-.| |..|-.++-... ..||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 345679999999888763 4467788765 999999986411 24999
Q ss_pred CCCCc
Q 005385 690 CKTTA 694 (699)
Q Consensus 690 CR~~L 694 (699)
|-=.+
T Consensus 184 CGP~l 188 (772)
T 4g9i_A 184 CGPSY 188 (772)
T ss_dssp TSCCE
T ss_pred CCceE
Confidence 97543
No 141
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=27.42 E-value=23 Score=31.80 Aligned_cols=11 Identities=45% Similarity=1.340 Sum_probs=10.4
Q ss_pred ccHHHHHHHHh
Q 005385 672 FHTSCIKQWLM 682 (699)
Q Consensus 672 FH~~CIkqWL~ 682 (699)
||+.|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 142
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=26.33 E-value=23 Score=40.97 Aligned_cols=50 Identities=26% Similarity=0.565 Sum_probs=35.7
Q ss_pred CCCCcccccccccCCCCc-------eEEeccCCcc--------------------cHHHHHHHHhc--------CCCCCC
Q 005385 645 QEQEPCCICQEEYNDGED-------TGILHCGHDF--------------------HTSCIKQWLMH--------KNLCPI 689 (699)
Q Consensus 645 e~de~C~ICLEef~~~e~-------v~iLPCGHiF--------------------H~~CIkqWL~~--------k~sCPi 689 (699)
-+.-.|.-|+.|+.++.+ +-++.||-.| |..|-+++-.. -..||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 345679999999887663 3467788665 99999997641 124999
Q ss_pred CCCCc
Q 005385 690 CKTTA 694 (699)
Q Consensus 690 CR~~L 694 (699)
|-=.+
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 96544
No 143
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.20 E-value=50 Score=29.24 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=34.5
Q ss_pred CcccccccccCC-CCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 648 EPCCICQEEYND-GEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 648 e~C~ICLEef~~-~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
..|..|...+.+ +... ...=+..||..|..+.+..+..|-.|.+.|..
T Consensus 33 F~C~~C~~~L~~~~~~~-~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECC-EEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeE-EEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 468888888753 1111 33456789999998877666689999998864
No 144
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=25.64 E-value=36 Score=32.74 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=31.5
Q ss_pred CCCCCCCcccccccccCCCCceEEe--ccCCcccHHHHHHHHhcC----------CCCCCCCCC
Q 005385 642 GSQQEQEPCCICQEEYNDGEDTGIL--HCGHDFHTSCIKQWLMHK----------NLCPICKTT 693 (699)
Q Consensus 642 ~s~e~de~C~ICLEef~~~e~v~iL--PCGHiFH~~CIkqWL~~k----------~sCPiCR~~ 693 (699)
+....+..|.||-+- ++.+..- .|-..||..||+.++-.. -.|=+|.-.
T Consensus 74 DeDG~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp CTTSSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CCCCCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 344457789999753 3322222 488999999999987421 238777643
No 145
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=25.62 E-value=9.9 Score=42.39 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=30.5
Q ss_pred CCcccccccccCCC-CceEEeccCCcccHHHHHHHHh-----cCCCCCCCCCC
Q 005385 647 QEPCCICQEEYNDG-EDTGILHCGHDFHTSCIKQWLM-----HKNLCPICKTT 693 (699)
Q Consensus 647 de~C~ICLEef~~~-e~v~iLPCGHiFH~~CIkqWL~-----~k~sCPiCR~~ 693 (699)
....|||...+... ..+.+-.|.--||..|+.---. .+-.||.|+..
T Consensus 36 ~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 36 PPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 34455999887533 3444557999999999943211 22459999853
No 146
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=25.42 E-value=6.4 Score=31.60 Aligned_cols=41 Identities=34% Similarity=0.796 Sum_probs=24.5
Q ss_pred cccccccccCCCCceEEec--cC-CcccHHHHHHHHhc----CCCCCCCCC
Q 005385 649 PCCICQEEYNDGEDTGILH--CG-HDFHTSCIKQWLMH----KNLCPICKT 692 (699)
Q Consensus 649 ~C~ICLEef~~~e~v~iLP--CG-HiFH~~CIkqWL~~----k~sCPiCR~ 692 (699)
.+.||..... +..+..=. |. ..||..|+. |.. +-.||.|+.
T Consensus 11 ~~C~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYCLCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EETTTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CEEECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3449987642 33222224 55 679999997 432 224999865
No 147
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=23.97 E-value=21 Score=32.10 Aligned_cols=45 Identities=24% Similarity=0.521 Sum_probs=27.2
Q ss_pred CCCCCCcccccccccCCCCceEEe--ccCCcccHHHHHHHHhcC----CCCCCCCC
Q 005385 643 SQQEQEPCCICQEEYNDGEDTGIL--HCGHDFHTSCIKQWLMHK----NLCPICKT 692 (699)
Q Consensus 643 s~e~de~C~ICLEef~~~e~v~iL--PCGHiFH~~CIkqWL~~k----~sCPiCR~ 692 (699)
....++.|.+|.+. ++.+..= .|-..||..|+. |... -.||.|+-
T Consensus 11 ~~~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C 61 (107)
T 4gne_A 11 KQMHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQC 61 (107)
T ss_dssp CCSSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred cCCCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCC
Confidence 34566789999832 3322222 377899999997 4422 23776653
No 148
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=23.10 E-value=25 Score=41.38 Aligned_cols=49 Identities=22% Similarity=0.487 Sum_probs=34.7
Q ss_pred CCCcccccccccCCCCc-------eEEeccCCcc--------------------cHHHHHHHHhc--------CCCCCCC
Q 005385 646 EQEPCCICQEEYNDGED-------TGILHCGHDF--------------------HTSCIKQWLMH--------KNLCPIC 690 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~-------v~iLPCGHiF--------------------H~~CIkqWL~~--------k~sCPiC 690 (699)
+.-.|.-|+.|+.++.+ +-++.||-.| |..|-+++-.. -..||.|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~C 189 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDC 189 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTT
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCcc
Confidence 44679999999887663 4467788554 99999997531 1249999
Q ss_pred CCCc
Q 005385 691 KTTA 694 (699)
Q Consensus 691 R~~L 694 (699)
--.+
T Consensus 190 GP~l 193 (761)
T 3vth_A 190 GPSL 193 (761)
T ss_dssp SCCE
T ss_pred CCee
Confidence 6543
No 149
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.97 E-value=43 Score=27.22 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=23.7
Q ss_pred CCCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCc
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 694 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~L 694 (699)
....|..|-+.+... .+..-+..||.+|. .|-.|++.|
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCCccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCC
Confidence 345688887776642 13345677777764 466776654
No 150
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.84 E-value=37 Score=27.24 Aligned_cols=40 Identities=25% Similarity=0.540 Sum_probs=23.5
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcCC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 696 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll~ 696 (699)
...|..|-+.+...+.+ ..-+..||.+|. .|-.|++.|..
T Consensus 9 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKV--SSLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEE--EETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEE--EECCeEeeCCCC--------CCCCCCCccCC
Confidence 34677777776655422 234566776663 46677666543
No 151
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.83 E-value=39 Score=28.17 Aligned_cols=38 Identities=24% Similarity=0.524 Sum_probs=18.2
Q ss_pred CCcccccccccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCCCCCcC
Q 005385 647 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 695 (699)
Q Consensus 647 de~C~ICLEef~~~e~v~iLPCGHiFH~~CIkqWL~~k~sCPiCR~~Ll 695 (699)
...|..|-+.+. +. .+..-+..||.+|. .|-.|++.|.
T Consensus 25 ~~~C~~C~~~I~-~~--~v~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIR-GP--FLVALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCC-SC--EEEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCccCCCEec-ce--EEEECCccccccCC--------ccCCCCCCCC
Confidence 345666666553 22 12234555555553 3555555543
No 152
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=20.73 E-value=25 Score=28.35 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=29.6
Q ss_pred CCCcccccccccCCCCceEEeccCCcccH-HHHHHHHhcCCCCCCCCCCc
Q 005385 646 EQEPCCICQEEYNDGEDTGILHCGHDFHT-SCIKQWLMHKNLCPICKTTA 694 (699)
Q Consensus 646 ~de~C~ICLEef~~~e~v~iLPCGHiFH~-~CIkqWL~~k~sCPiCR~~L 694 (699)
+-..|..|...+.... . ...=+..||. .|..+. ....|-.|...+
T Consensus 26 ~CF~C~~C~~~L~~~~-~-~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG-H-AEHEGKPYCNHPCYSAM--FGPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTT-E-EEETTEEEETTTHHHHH--SSCCCSSCCCSS
T ss_pred CCCCccccCccCCCCc-e-ECcCCeEeeCHHHHHHH--hCccCCCcCCce
Confidence 4467889988877653 2 2334677888 588663 455688887554
No 153
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.66 E-value=13 Score=29.89 Aligned_cols=38 Identities=18% Similarity=0.459 Sum_probs=26.3
Q ss_pred CCcccccccccCCCCc---eEEec--cCCcccHHHHHHHHhcC
Q 005385 647 QEPCCICQEEYNDGED---TGILH--CGHDFHTSCIKQWLMHK 684 (699)
Q Consensus 647 de~C~ICLEef~~~e~---v~iLP--CGHiFH~~CIkqWL~~k 684 (699)
...|+-|.-.++..+- +.... |++.||..|..+|-...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 3568888777765442 22223 89999999999986543
Done!