BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005386
(699 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9WTK3|GPAA1_MOUSE Glycosylphosphatidylinositol anchor attachment 1 protein OS=Mus
musculus GN=Gpaa1 PE=1 SV=3
Length = 621
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 158/613 (25%), Positives = 264/613 (43%), Gaps = 94/613 (15%)
Query: 10 RKRPIVRLAVLLLSHSVLVSVICCTAGV--FGLLLLPVLAKNTYISENALMPGSASSMLS 67
R+R + R+ + L + + V+ AG+ F L P L + TY+SENA+ S+M+
Sbjct: 9 RRRALARIVLRL---NTPLCVLSYVAGIAWFLALAFPPLTQRTYMSENAM----GSTMVE 61
Query: 68 NQEV--SEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPL 125
Q V A ++ P GA + + + M ++G +V F +L P
Sbjct: 62 EQFVGGDRARSFARDFAAHRKKP-GALPVAW--LERSMRSVGLEVYTQSFSRKL----PF 114
Query: 126 HFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGI 185
PD + + + G N GI+RAPR E++VL P + ++G+
Sbjct: 115 -----PD----ETHERYMVSGTNVYGILRAPRSASTESLVLTVPCGP---DATNSQAVGL 162
Query: 186 AYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGN 245
++ + + AKDII+LV D + AWL YH + + S +
Sbjct: 163 LLALAAHFRGQIYWAKDIIFLVTDH---DLLGTEAWLEAYHDINVTGIQSSPLQG----- 214
Query: 246 NNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAV 305
R+G + AA+ L ++ ++ +L + E NGQ+PNLDL+N+
Sbjct: 215 ------------RAGAIQAAVALELS--SDVVTSLDVTVEGLNGQLPNLDLLNLFQTFC- 259
Query: 306 HRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLAS 365
+ GL ++ GK+ DW S ++G TL
Sbjct: 260 QKGGLLCTLQ---------------------GKLQPQ---DWT---SLEGPLQGLQTLLL 292
Query: 366 SLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVN 425
+ QA G P GPHG F Y V+A+TL + + L G+ +EG+ R +N
Sbjct: 293 MVLRQASGRPHGPHGLFLRYGVEALTLR-----GINSFRQYKYDLATVGKALEGMFRKLN 347
Query: 426 NLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLDLNPTSEKDK 485
+LLE+ HQSFF YLL + S+FVS+G+YM A L+ L + A L+ + E+
Sbjct: 348 HLLERLHQSFFFYLLPALSRFVSIGLYMPATGFLLLVLGLKALELWMQLHQAGVNPEEAG 407
Query: 486 SATSNELGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSV----WI 541
A S + L S+ ++ + L YF+ + T +F V +
Sbjct: 408 KAPSPGTPLLPTQGVGLASLTAPLLI---SQAMGLALYFLPVLGQHLATQHFPVAEAEAV 464
Query: 542 LLSILSLEILRWILVSPSSHIYG--LPQGEWATLKSATISSFFIGLGLMSVINFATAEIG 599
+L++L++ + L + + +P W LK + + LG ++++NF+ +
Sbjct: 465 VLTLLAIYVAGLALPHNTHRVVNSQVPDRGWMALKLVALIYLALQLGCIALLNFSLGFLL 524
Query: 600 ALLMVPMALMAHP 612
A MVP A +A P
Sbjct: 525 AATMVPAAALAKP 537
>sp|O43292|GPAA1_HUMAN Glycosylphosphatidylinositol anchor attachment 1 protein OS=Homo
sapiens GN=GPAA1 PE=1 SV=3
Length = 621
Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 154/610 (25%), Positives = 260/610 (42%), Gaps = 88/610 (14%)
Query: 10 RKRPIVRLAVLLLSHSVLVSVICCTAGV--FGLLLLPVLAKNTYISENALMPGSASSMLS 67
R+R + RL + L + + V+ AG+ F L+ P L + TY+SENA+ S+M+
Sbjct: 9 RRRALARLVLRL---NAPLCVLSYVAGIAWFLALVFPPLTQRTYMSENAM----GSTMVE 61
Query: 68 NQEVS-EANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLH 126
Q + + H GA + + + M ++G +V F +L P
Sbjct: 62 EQFAGGDRARAFARDFAAHRKKSGALPVAW--LERTMRSVGLEVYTQSFSRKL----PF- 114
Query: 127 FFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIA 186
PD + + + G N GI+RAPR E++VL P + + ++G+
Sbjct: 115 ----PD----ETHERYMVSGTNVYGILRAPRAASTESLVLTVPCGSDS---TNSQAVGLL 163
Query: 187 YSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNN 246
++ + + AKDI++LV + + AWL YH + + S +
Sbjct: 164 LALAAHFRGQIYWAKDIVFLVTEH---DLLGTEAWLEAYHDVNVTGMQSSPLQG------ 214
Query: 247 NFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVH 306
R+G + AA+ L ++ ++ +L + E NGQ+PNLDL+N+
Sbjct: 215 -----------RAGAIQAAVALELS--SDVVTSLDVAVEGLNGQLPNLDLLNLFQTFC-Q 260
Query: 307 RQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNP-DWKLGISAADYVEGAATLAS 365
+ GL ++ GK L P DW S ++G TL
Sbjct: 261 KGGLLCTLQ---------------------GK----LQPEDWT---SLDGPLQGLQTLLL 292
Query: 366 SLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVN 425
+ QA G P G HG F Y+V+A+TL + + L+ G+ +EG+ R +N
Sbjct: 293 MVLRQASGRPHGSHGLFLRYRVEALTLR-----GINSFRQYKYDLVAVGKALEGMFRKLN 347
Query: 426 NLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLDLNPTSEKDK 485
+LLE+ HQSFFLYLL S+FVS+G+YM A L+ L + A L+ + + E+
Sbjct: 348 HLLERLHQSFFLYLLPGLSRFVSIGLYMPAVGFLLLVLGLKALELWMQLHEAGMGLEEPG 407
Query: 486 SATSNELGSVLQSWKWLNS-VKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVWILLS 544
A + L S V + + G + +LP + + ++L+
Sbjct: 408 GAPGPSVPLPPSQGVGLASLVAPLLISQAMGLALYVLPVLGQHVATQHFPVAEAEAVVLT 467
Query: 545 ILSLEILRWILVSPSSHIYGL--PQGEWATLKSATISSFFIGLGLMSVINFATAEIGALL 602
+L++ L + + P W LK + + LG +++ NF+ + A
Sbjct: 468 LLAIYAAGLALPHNTHRVVSTQAPDRGWMALKLVALIYLALQLGCIALTNFSLGFLLATT 527
Query: 603 MVPMALMAHP 612
MVP A +A P
Sbjct: 528 MVPTAALAKP 537
>sp|Q9US48|GAA1_SCHPO GPI transamidase component gaa1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=gaa1 PE=3 SV=1
Length = 581
Score = 115 bits (289), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 114/461 (24%), Positives = 181/461 (39%), Gaps = 101/461 (21%)
Query: 15 VRLAVLLLSHSVLVSVICCTAGVFGLLLLPV--LAKNTYISENALMPGSASSMLSNQEVS 72
+R+ L H + + G+ + +LP + ++SE+AL+PG
Sbjct: 9 IRVFPFLQRHLFFLQLSLTLIGLSWIFILPRNEIIDRLHVSESALLPG------------ 56
Query: 73 EANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPD 132
++N N T S A S+L A V + + L Q F+
Sbjct: 57 -------QVNTYFENRYSKTVSSSLTAANTWSHLDASVGTNTMYDDLEQ-----IFTAMG 104
Query: 133 SGVMQENST-----RSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAY 187
++N + G N + +RAPRGD E+++L P+ G E + +A
Sbjct: 105 LPTQKQNYSINIPGSEFNGSNFITTLRAPRGDATESLLLCVPWKDHIGQYNEA-GVALAI 163
Query: 188 SVFSLLTRVTWLAKDIIWLVADSQ-YGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNN 246
S+ + +KDII ++ D YG + + ++ D TP
Sbjct: 164 SLLKYFQGWSLWSKDIILVIFDDPVYGPSSFLTSYF-DQTTP------------------ 204
Query: 247 NFESKISYGIR--RSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVH--Y 302
ISY RSG++ A L L + N D L + +A+NGQ+PNLDL N + +
Sbjct: 205 ----YISYTPLKIRSGSIQAGLSLELVTTENNSDVLEVLYQATNGQLPNLDLFNTISRIF 260
Query: 303 LAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAAT 362
+ LR++ FH S + Y +
Sbjct: 261 MQHFNYPLRLQGYDFH-------------------------------ANSGSSYTSRLKS 289
Query: 363 LASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLR--ISFDRLDRRNDFLLHGGRLIEGV 420
L + QA+ T H F Y++D +TL ++ SFD + G+ IE
Sbjct: 290 LWMGMLTQAVSNVTSAHALFPQYRIDMLTLRMKVKDPFSFD--------MFRFGQAIEST 341
Query: 421 IRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVA 461
RS+NNLLE HQSFF Y + F+S+G YM + +L A
Sbjct: 342 FRSLNNLLEHLHQSFFFYFILDHLHFISIGNYMPSILILAA 382
>sp|P39012|GAA1_YEAST GPI transamidase component GAA1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=GAA1 PE=1 SV=1
Length = 614
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 125/468 (26%), Positives = 206/468 (44%), Gaps = 119/468 (25%)
Query: 8 KKRKRPIVRLAVL--LLSHSVLVSVICCTAGVFGLLLLPVLA--KNTYISENALMPGSAS 63
+K R IV + ++ +++ ++S++C G + +LP+ + TYISENALMP A
Sbjct: 5 EKLHRRIVDMGLVPRIIALLPVISMLCALFGFISIAILPMDGQYRRTYISENALMPSQAY 64
Query: 64 SMLSNQE---VSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLN 120
S E + IKE+ N+ S E + ++ ++ G +
Sbjct: 65 SYFRESEWNILRGYRSQIKEMVNMTS------MERNNLMGSWLQEFGTKT---------- 108
Query: 121 QFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTP-YNAVKGGVRE 179
+ EN YG G++ APRGDG EA+VL P +N+
Sbjct: 109 --------------AIYENEQ---YGETLYGVMHAPRGDGTEAMVLAVPWFNSDDEFNIG 151
Query: 180 TLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTE 239
+LG++ + F +R +K+II + +++ A + +W+ YHT +LD
Sbjct: 152 GAALGVSLARF--FSRWPVWSKNIIVVFSEN---PRAALRSWVEAYHT----SLD----- 197
Query: 240 TCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINI 299
G++ AA+VL + + + + I + NG++PNLDL+NI
Sbjct: 198 -----------------LTGGSIEAAVVLDYSSTEDFFEYVEISYDGLNGELPNLDLVNI 240
Query: 300 VHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEG 359
+ H +G++V + H L + + + F S K++ DW L
Sbjct: 241 AISITEH-EGMKVSL---HGLPSDQLTNN---NFWSRLKILCLGIRDWALS--------- 284
Query: 360 AATLASSLYHQALGVPTGPHG--AFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLI 417
GV PHG AF +++ ++TL+ D + GR+
Sbjct: 285 -------------GVKK-PHGNEAFSGWRIQSVTLKAHGNSGHD--------ITTFGRIP 322
Query: 418 EGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYM-------IAFAL 458
E + RS+NNLLEKFHQSFF YLL +P +FVS+ Y+ IAFA+
Sbjct: 323 EAMFRSINNLLEKFHQSFFFYLLLAPRQFVSISSYLPSAVALSIAFAI 370
>sp|Q9X6Y1|RPOB_AQUPY DNA-directed RNA polymerase subunit beta OS=Aquifex pyrophilus
GN=rpoB PE=3 SV=1
Length = 1469
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 253 SYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRV 312
YG ++GT +L + N E + Y E + +DLINI+ YL R G RV
Sbjct: 462 DYGEYKAGTRITKELLKELFKNYKEIKVKDYTEDEARFLLPIDLINILKYLIDLRHG-RV 520
Query: 313 KVEQFHWLLNSKWVKSLGEVFESLGKM 339
K + L N + V+S+GE+ E+ ++
Sbjct: 521 KKDDIAHLGNRR-VRSVGELLENQARL 546
>sp|O67762|RPOB_AQUAE DNA-directed RNA polymerase subunit beta OS=Aquifex aeolicus
(strain VF5) GN=rpoB PE=3 SV=1
Length = 1468
Score = 36.6 bits (83), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 253 SYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRV 312
YG ++GT +L + E + Y E + +DL+NI+ YL R G RV
Sbjct: 462 DYGEYKAGTRVTKDLLKELFKQYKEIKVKDYTEDEARFILPIDLVNILKYLIDLRHG-RV 520
Query: 313 KVEQFHWLLNSKWVKSLGEVFESLGKM 339
K + L N + V+S+GE+ E+ ++
Sbjct: 521 KKDDIAHLGNRR-VRSVGELLENQARL 546
>sp|O43304|S14L5_HUMAN SEC14-like protein 5 OS=Homo sapiens GN=SEC14L5 PE=2 SV=3
Length = 696
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 465 VVAASLYAKTLDLNPTSEKDKSATSNELGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYF 524
V +L L +N +K ++ +LG + SW L ++ + + H W V L
Sbjct: 345 VGEEALLRHVLSVNEEGQKRCEGSTRQLGRPISSWTCLLDLEGLNMRHLWRPGVKALLRM 404
Query: 525 ISQIPDSDPTTNFSVWILLSILSLEILRWILVSP 558
I + D+ P T + I+ + +L W L+SP
Sbjct: 405 IEVVEDNYPETLGRLLIVRAPRVFPVL-WTLISP 437
>sp|B8I6G6|RSMH_CLOCE Ribosomal RNA small subunit methyltransferase H OS=Clostridium
cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584
/ H10) GN=rsmH PE=3 SV=1
Length = 313
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Query: 377 GPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFF 436
GPH A R +Q I + L I ++ D L GGRL S+ + + K +
Sbjct: 201 GPHPAKRTFQAIRIEVNNELGILNKTIEDCVDLLKRGGRLCIITFHSLEDRIVKMQYNKM 260
Query: 437 LYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLDLNPTSEKDK 485
+ T P F A+L+ P+V+ + LD NP + K
Sbjct: 261 VNPCTCPPAFPVCACGKKPKAVLINKKPIVSD---IRELDKNPRARSAK 306
>sp|Q3AIK3|APT_SYNSC Adenine phosphoribosyltransferase OS=Synechococcus sp. (strain
CC9605) GN=apt PE=3 SV=1
Length = 172
Score = 34.3 bits (77), Expect = 3.2, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 327 KSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALG-VPTGPHGAFRDY 385
+++ EV G++ + PD +GI + ++ GA LAS + LG VP G
Sbjct: 31 EAMAEVISQFGRICDQVKPDLIVGIESRGFIFGAP-LASD---RRLGFVPVRKPGKLPG- 85
Query: 386 QVDAITLEFSLRISFDRLDRRNDFLLHGGRLI 417
+ + L+++L DRL+ + D L H R++
Sbjct: 86 --EVVGLDYALEYGTDRLEIQADALEHSPRVL 115
>sp|Q75EW4|DHYS_ASHGO Deoxyhypusine synthase OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=DYS1 PE=3 SV=1
Length = 382
Score = 34.3 bits (77), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 161 KEAIVLVTPYNAVKGGVRETLSLGIAYSVFS-LLTRVTWLAKDIIWLVADSQYGEYAPVA 219
K I L N + G+RETL + +++ S ++T + +DII +A + GE+
Sbjct: 99 KSTIFLGYTSNLISSGLRETLRYLVQHNMVSAIVTTAGGVEEDIIKCLAPTYLGEFTLKG 158
Query: 220 AWLRDYHTPAFSNLDSLNTETC 241
A LRD NL N C
Sbjct: 159 AALRDKGMNRIGNLLVPNNNYC 180
>sp|O93640|EF2_METTE Elongation factor 2 OS=Methanosarcina thermophila GN=fusA PE=3 SV=1
Length = 730
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 30/105 (28%)
Query: 288 NGQMPNLDLINIVHYLAVHRQGLRVKVE------QFHWLLNSKWVKS------LGEVFES 335
G MP + V RQ LR V + L+N V S LG+V +
Sbjct: 123 EGTMPQTE--------TVLRQALREHVRPVLFVNKVDRLINELQVDSQEMQVRLGKVIDH 174
Query: 336 LGKMVKTLNPD-----WKLGISAADYVEGAATLASSLYHQALGVP 375
+ K++K +NP+ WK+ D G S+LY+ A+ VP
Sbjct: 175 VNKLIKNMNPEKFKAGWKV-----DAAAGTVAFGSALYNWAISVP 214
>sp|Q8TRC3|EF2_METAC Elongation factor 2 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=fusA PE=3 SV=1
Length = 730
Score = 33.5 bits (75), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 30/105 (28%)
Query: 288 NGQMPNLDLINIVHYLAVHRQGLRVKVE------QFHWLLNSKWVKS------LGEVFES 335
G MP + V RQ LR V + L+N V S LG+V +
Sbjct: 123 EGTMPQTE--------TVLRQALREHVRPVLFVNKVDRLINELQVDSQEMQIRLGKVIDH 174
Query: 336 LGKMVKTLNPD-----WKLGISAADYVEGAATLASSLYHQALGVP 375
+ K++K +NP+ WK+ D G S+LY+ A+ VP
Sbjct: 175 VNKLIKNMNPEKFKAGWKV-----DAAAGTVAFGSALYNWAISVP 214
>sp|Q8PUR7|EF2_METMA Elongation factor 2 OS=Methanosarcina mazei (strain ATCC BAA-159 /
DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=fusA PE=3
SV=1
Length = 730
Score = 33.5 bits (75), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 30/105 (28%)
Query: 288 NGQMPNLDLINIVHYLAVHRQGLRVKVE------QFHWLLNSKWVKS------LGEVFES 335
G MP + V RQ LR V + L+N V S LG+V +
Sbjct: 123 EGTMPQTE--------TVLRQALREHVRPVLFVNKVDRLINELQVDSQEMQVRLGKVIDH 174
Query: 336 LGKMVKTLNPD-----WKLGISAADYVEGAATLASSLYHQALGVP 375
+ K++K +NP+ WK+ D G S+LY+ A+ VP
Sbjct: 175 VNKLIKNMNPEKFKAGWKV-----DAAAGTVAFGSALYNWAISVP 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 255,101,923
Number of Sequences: 539616
Number of extensions: 10621114
Number of successful extensions: 25549
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 25518
Number of HSP's gapped (non-prelim): 27
length of query: 699
length of database: 191,569,459
effective HSP length: 125
effective length of query: 574
effective length of database: 124,117,459
effective search space: 71243421466
effective search space used: 71243421466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)