Query 005388
Match_columns 699
No_of_seqs 534 out of 3031
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 22:39:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0234 Fructose-6-phosphate 2 100.0 3.9E-61 8.5E-66 519.3 30.0 342 347-695 24-374 (438)
2 PTZ00322 6-phosphofructo-2-kin 100.0 3E-57 6.4E-62 527.6 37.3 331 350-695 214-575 (664)
3 PF01591 6PF2K: 6-phosphofruct 100.0 1.3E-50 2.9E-55 411.7 19.5 207 348-559 9-222 (222)
4 PRK13463 phosphatase PhoE; Pro 99.9 1.4E-26 3E-31 233.2 14.9 135 559-697 2-141 (203)
5 PRK14116 gpmA phosphoglyceromu 99.9 2.3E-26 5.1E-31 235.8 15.5 135 559-695 1-168 (228)
6 PRK15004 alpha-ribazole phosph 99.9 3.3E-26 7.1E-31 229.4 15.4 134 560-697 1-139 (199)
7 PRK14119 gpmA phosphoglyceromu 99.9 4.7E-26 1E-30 233.5 15.2 136 559-696 1-169 (228)
8 PRK01295 phosphoglyceromutase; 99.9 9.4E-26 2E-30 228.0 15.9 135 559-695 2-145 (206)
9 PRK01112 phosphoglyceromutase; 99.9 9.7E-26 2.1E-30 231.4 14.9 133 559-695 1-167 (228)
10 PRK14117 gpmA phosphoglyceromu 99.9 1.2E-25 2.7E-30 230.9 15.2 134 559-694 1-167 (230)
11 PRK14118 gpmA phosphoglyceromu 99.9 2.5E-25 5.5E-30 228.1 15.3 134 560-695 1-167 (227)
12 COG0406 phoE Broad specificity 99.9 3.7E-25 8.1E-30 222.5 15.5 138 559-698 2-144 (208)
13 TIGR03162 ribazole_cobC alpha- 99.9 7.1E-25 1.5E-29 214.6 15.1 130 562-697 1-135 (177)
14 PRK14120 gpmA phosphoglyceromu 99.9 8.4E-25 1.8E-29 227.3 15.8 135 557-693 2-167 (249)
15 TIGR01258 pgm_1 phosphoglycera 99.9 1.7E-24 3.6E-29 224.6 15.6 135 560-696 1-168 (245)
16 PRK13462 acid phosphatase; Pro 99.9 2.1E-24 4.5E-29 217.8 15.0 130 557-697 3-137 (203)
17 TIGR03848 MSMEG_4193 probable 99.9 1.8E-24 3.9E-29 217.6 14.3 130 561-696 1-136 (204)
18 PRK03482 phosphoglycerate muta 99.9 1.8E-24 4E-29 219.1 14.5 134 559-696 1-139 (215)
19 PRK14115 gpmA phosphoglyceromu 99.9 2.5E-24 5.3E-29 223.6 15.6 134 560-695 1-167 (247)
20 smart00855 PGAM Phosphoglycera 99.9 2.5E-23 5.3E-28 199.7 13.8 130 561-696 1-135 (155)
21 PRK07238 bifunctional RNase H/ 99.9 3.5E-23 7.7E-28 226.6 16.4 136 557-696 169-309 (372)
22 PF00300 His_Phos_1: Histidine 99.9 9.1E-24 2E-28 200.5 10.1 133 561-695 1-138 (158)
23 KOG0235 Phosphoglycerate mutas 99.9 1.4E-21 2.9E-26 197.1 11.9 137 558-696 4-151 (214)
24 PTZ00123 phosphoglycerate muta 99.8 5.2E-19 1.1E-23 182.5 14.1 122 572-695 1-155 (236)
25 cd05816 CBM20_DPE2_repeat2 Dis 99.8 8.8E-19 1.9E-23 157.5 10.5 93 33-126 2-94 (99)
26 COG0588 GpmA Phosphoglycerate 99.8 1.2E-18 2.5E-23 173.4 10.3 134 559-695 1-168 (230)
27 PF00686 CBM_20: Starch bindin 99.8 2E-18 4.3E-23 154.1 8.3 90 30-123 1-94 (96)
28 COG0529 CysC Adenylylsulfate k 99.7 2.2E-16 4.7E-21 153.8 12.6 100 347-457 19-118 (197)
29 cd05807 CBM20_CGTase CGTase, C 99.7 1.2E-16 2.6E-21 144.2 9.5 93 29-124 1-97 (101)
30 cd05467 CBM20 The family 20 ca 99.7 5.3E-16 1.1E-20 137.7 10.1 85 32-119 1-87 (96)
31 cd05820 CBM20_novamyl Novamyl 99.7 4.9E-16 1.1E-20 140.8 10.0 97 30-129 2-102 (103)
32 PF01583 APS_kinase: Adenylyls 99.6 9.7E-16 2.1E-20 148.5 12.4 116 350-478 1-116 (156)
33 COG0645 Predicted kinase [Gene 99.6 2.3E-15 5.1E-20 146.2 12.8 143 351-519 1-149 (170)
34 cd05810 CBM20_alpha_MTH Glucan 99.6 1.2E-15 2.6E-20 136.9 8.7 87 32-119 2-89 (97)
35 cd05817 CBM20_DSP Dual-specifi 99.6 1.8E-15 3.8E-20 136.4 9.0 82 33-116 2-83 (100)
36 cd05809 CBM20_beta_amylase Bet 99.6 5E-15 1.1E-19 133.2 10.2 87 30-118 2-90 (99)
37 cd05808 CBM20_alpha_amylase Al 99.6 4.9E-15 1.1E-19 131.6 9.8 83 32-118 2-84 (95)
38 PF13671 AAA_33: AAA domain; P 99.6 3.4E-14 7.3E-19 133.6 15.1 139 353-506 1-140 (143)
39 cd05815 CBM20_DPE2_repeat1 Dis 99.6 8E-15 1.7E-19 132.2 10.0 85 33-120 2-89 (101)
40 cd05814 CBM20_Prei4 Prei4, N-t 99.6 4.1E-15 8.8E-20 138.4 7.7 83 33-116 3-94 (120)
41 cd05811 CBM20_glucoamylase Glu 99.6 1.4E-14 3E-19 131.6 10.7 92 28-123 4-99 (106)
42 PLN02950 4-alpha-glucanotransf 99.5 3.2E-14 6.8E-19 170.4 11.4 102 26-129 148-249 (909)
43 PTZ00122 phosphoglycerate muta 99.5 4.3E-14 9.2E-19 151.0 11.1 114 560-697 103-227 (299)
44 cd05818 CBM20_water_dikinase P 99.5 6.1E-14 1.3E-18 124.6 9.9 84 31-121 2-85 (92)
45 cd05813 CBM20_genethonin_1 Gen 99.5 6.1E-14 1.3E-18 125.0 9.9 79 32-115 2-80 (95)
46 cd07067 HP_PGM_like Histidine 99.5 1.1E-13 2.4E-18 131.8 10.3 77 561-639 1-83 (153)
47 cd05806 CBM20_laforin Laforin 99.4 2.8E-13 6.1E-18 124.4 9.0 83 32-117 2-96 (112)
48 PRK05537 bifunctional sulfate 99.4 5.5E-13 1.2E-17 153.6 12.8 147 320-479 361-509 (568)
49 TIGR01663 PNK-3'Pase polynucle 99.4 1.6E-12 3.4E-17 147.9 15.2 137 349-527 367-507 (526)
50 PHA02530 pseT polynucleotide k 99.4 4.3E-12 9.3E-17 134.6 16.6 146 351-516 2-150 (300)
51 cd02027 APSK Adenosine 5'-phos 99.4 2.9E-12 6.3E-17 123.3 12.8 114 353-479 1-114 (149)
52 KOG0635 Adenosine 5'-phosphosu 99.4 1.3E-12 2.9E-17 124.2 9.9 108 348-470 28-136 (207)
53 PF08433 KTI12: Chromatin asso 99.3 2.2E-11 4.8E-16 128.4 15.9 135 353-507 3-138 (270)
54 TIGR00455 apsK adenylylsulfate 99.3 1.9E-11 4.1E-16 121.0 13.6 117 349-478 16-132 (184)
55 PRK06762 hypothetical protein; 99.3 3.4E-11 7.4E-16 116.9 14.5 115 351-483 2-117 (166)
56 cd02021 GntK Gluconate kinase 99.3 1.7E-11 3.6E-16 117.0 12.0 118 353-484 1-120 (150)
57 TIGR03574 selen_PSTK L-seryl-t 99.3 1.9E-11 4.1E-16 126.9 13.1 115 353-482 1-116 (249)
58 cd07040 HP Histidine phosphata 99.3 1.3E-11 2.9E-16 116.5 10.3 64 561-626 1-66 (153)
59 TIGR00249 sixA phosphohistidin 99.3 7.5E-12 1.6E-16 121.1 8.3 63 560-626 1-63 (152)
60 PRK03846 adenylylsulfate kinas 99.3 4.1E-11 8.8E-16 120.4 13.8 119 346-478 19-138 (198)
61 COG0703 AroK Shikimate kinase 99.3 1.3E-11 2.7E-16 121.3 9.8 140 353-512 4-144 (172)
62 PRK00889 adenylylsulfate kinas 99.3 6.6E-11 1.4E-15 116.1 14.4 115 349-478 2-116 (175)
63 PRK10848 phosphohistidine phos 99.3 1E-11 2.2E-16 121.1 8.5 63 560-626 1-63 (159)
64 COG2062 SixA Phosphohistidine 99.3 9.7E-12 2.1E-16 121.3 8.1 66 559-626 1-66 (163)
65 cd00227 CPT Chloramphenicol (C 99.3 5.9E-11 1.3E-15 116.7 13.2 118 352-483 3-132 (175)
66 KOG4754 Predicted phosphoglyce 99.3 1.8E-11 3.8E-16 122.1 9.3 138 559-696 14-178 (248)
67 COG4088 Predicted nucleotide k 99.2 3.1E-11 6.7E-16 120.6 10.5 136 353-507 3-139 (261)
68 COG4639 Predicted kinase [Gene 99.2 7.3E-11 1.6E-15 113.4 12.0 112 351-478 2-114 (168)
69 PRK05506 bifunctional sulfate 99.2 5.1E-11 1.1E-15 139.5 12.6 120 346-478 455-574 (632)
70 PRK06193 hypothetical protein; 99.2 4.9E-11 1.1E-15 120.8 10.6 68 558-627 41-115 (206)
71 PRK15416 lipopolysaccharide co 99.2 2.6E-11 5.7E-16 122.1 7.6 86 557-645 52-139 (201)
72 PRK11545 gntK gluconate kinase 99.2 3.3E-10 7E-15 110.8 13.6 141 357-527 1-143 (163)
73 TIGR01313 therm_gnt_kin carboh 99.2 3.3E-10 7.2E-15 109.6 13.4 114 354-483 1-115 (163)
74 cd00464 SK Shikimate kinase (S 99.2 1.5E-10 3.3E-15 110.1 10.7 137 354-512 2-140 (154)
75 PRK05541 adenylylsulfate kinas 99.1 4.1E-10 8.9E-15 110.6 13.0 115 350-480 6-120 (176)
76 TIGR03575 selen_PSTK_euk L-ser 99.1 6.9E-10 1.5E-14 120.4 12.9 128 353-482 1-175 (340)
77 PRK13948 shikimate kinase; Pro 99.1 5.8E-10 1.3E-14 111.2 11.2 139 350-511 9-150 (182)
78 PRK00625 shikimate kinase; Pro 99.1 4.3E-10 9.4E-15 111.2 10.2 137 353-511 2-141 (173)
79 PRK12339 2-phosphoglycerate ki 99.1 2.8E-09 6.1E-14 107.6 16.2 126 350-484 2-142 (197)
80 PLN02950 4-alpha-glucanotransf 99.1 4.7E-10 1E-14 134.9 10.8 86 33-120 9-98 (909)
81 PRK13946 shikimate kinase; Pro 99.0 3.2E-09 6.9E-14 105.5 11.4 139 350-510 9-150 (184)
82 PRK14532 adenylate kinase; Pro 99.0 2E-09 4.3E-14 106.7 9.9 142 353-516 2-155 (188)
83 KOG3734 Predicted phosphoglyce 99.0 1.6E-09 3.4E-14 113.1 9.5 137 556-698 9-193 (272)
84 KOG3062 RNA polymerase II elon 98.9 5.2E-09 1.1E-13 105.8 11.3 139 353-507 3-143 (281)
85 PRK12337 2-phosphoglycerate ki 98.9 3.3E-08 7.1E-13 110.6 18.7 130 349-485 253-407 (475)
86 TIGR01359 UMP_CMP_kin_fam UMP- 98.9 1.8E-09 3.9E-14 106.2 7.4 152 353-527 1-167 (183)
87 PRK13949 shikimate kinase; Pro 98.9 4.3E-09 9.4E-14 103.6 10.0 137 354-511 4-146 (169)
88 PRK14527 adenylate kinase; Pro 98.9 5.9E-09 1.3E-13 104.0 11.1 158 350-527 5-175 (191)
89 KOG4238 Bifunctional ATP sulfu 98.9 3E-09 6.6E-14 113.0 8.8 110 348-470 47-157 (627)
90 PRK13947 shikimate kinase; Pro 98.9 7.8E-09 1.7E-13 100.6 10.6 136 354-510 4-141 (171)
91 PRK14531 adenylate kinase; Pro 98.9 2.2E-09 4.8E-14 106.5 6.8 139 352-516 3-152 (183)
92 PRK09825 idnK D-gluconate kina 98.9 3.1E-08 6.8E-13 98.2 14.4 146 352-527 4-151 (176)
93 PRK00131 aroK shikimate kinase 98.9 8.3E-09 1.8E-13 99.8 9.7 142 350-513 3-147 (175)
94 PRK14021 bifunctional shikimat 98.9 1E-08 2.3E-13 118.1 11.8 145 350-513 5-152 (542)
95 PF06414 Zeta_toxin: Zeta toxi 98.8 3.1E-08 6.6E-13 99.7 12.9 128 348-484 12-143 (199)
96 COG3265 GntK Gluconate kinase 98.8 1.6E-08 3.4E-13 96.7 10.1 141 357-527 1-142 (161)
97 PRK05057 aroK shikimate kinase 98.8 3E-08 6.6E-13 97.8 12.0 138 351-511 4-145 (172)
98 PRK01184 hypothetical protein; 98.8 1.2E-07 2.5E-12 93.8 14.4 139 352-509 2-143 (184)
99 PLN02200 adenylate kinase fami 98.8 9.1E-08 2E-12 99.1 14.0 141 350-516 42-192 (234)
100 PLN02199 shikimate kinase 98.8 2.8E-08 6E-13 105.6 10.3 141 351-511 102-251 (303)
101 PRK03731 aroL shikimate kinase 98.7 4.8E-08 1E-12 95.3 10.5 137 353-511 4-145 (171)
102 KOG3354 Gluconate kinase [Carb 98.7 7.2E-08 1.6E-12 92.8 10.6 122 350-484 11-140 (191)
103 TIGR01360 aden_kin_iso1 adenyl 98.7 1.1E-07 2.4E-12 93.4 12.0 140 352-515 4-154 (188)
104 PF07931 CPT: Chloramphenicol 98.7 2.6E-07 5.6E-12 91.7 12.8 123 352-483 2-131 (174)
105 PRK08154 anaerobic benzoate ca 98.6 1.1E-07 2.4E-12 102.4 10.0 148 346-510 128-275 (309)
106 PRK12338 hypothetical protein; 98.6 3.6E-07 7.9E-12 98.4 12.6 127 350-484 3-152 (319)
107 cd01428 ADK Adenylate kinase ( 98.6 5.2E-07 1.1E-11 89.3 12.7 150 354-517 2-173 (194)
108 PRK14530 adenylate kinase; Pro 98.6 5.5E-07 1.2E-11 91.6 12.8 148 353-516 5-181 (215)
109 TIGR01351 adk adenylate kinase 98.6 1E-07 2.2E-12 96.6 6.8 145 354-517 2-180 (210)
110 PRK06696 uridine kinase; Valid 98.5 6.6E-07 1.4E-11 91.7 12.0 150 348-513 19-193 (223)
111 PF01202 SKI: Shikimate kinase 98.5 1.1E-07 2.5E-12 92.1 6.0 132 360-512 1-134 (158)
112 PRK00279 adk adenylate kinase; 98.5 3E-07 6.6E-12 93.5 7.8 150 353-517 2-183 (215)
113 PRK13951 bifunctional shikimat 98.5 5.1E-07 1.1E-11 102.9 10.0 136 353-513 2-139 (488)
114 PRK06217 hypothetical protein; 98.4 3.2E-06 7E-11 83.8 13.6 129 353-510 3-134 (183)
115 KOG4609 Predicted phosphoglyce 98.4 2.5E-07 5.3E-12 92.8 4.4 75 558-639 93-172 (284)
116 PRK03839 putative kinase; Prov 98.4 4.7E-07 1E-11 89.3 6.4 100 353-483 2-101 (180)
117 PRK04040 adenylate kinase; Pro 98.4 6.1E-06 1.3E-10 82.8 13.5 39 351-392 2-40 (188)
118 PRK08356 hypothetical protein; 98.3 1.5E-05 3.3E-10 79.9 16.0 121 350-485 4-138 (195)
119 PRK06761 hypothetical protein; 98.3 1.7E-06 3.6E-11 92.0 8.5 124 351-484 3-129 (282)
120 cd01672 TMPK Thymidine monopho 98.3 3.3E-05 7.1E-10 76.1 16.9 34 352-385 1-34 (200)
121 PF13207 AAA_17: AAA domain; P 98.3 3.3E-06 7.1E-11 77.2 8.8 33 353-390 1-33 (121)
122 PRK14528 adenylate kinase; Pro 98.3 1E-05 2.2E-10 80.8 13.0 145 353-517 3-157 (186)
123 PRK04220 2-phosphoglycerate ki 98.3 3E-05 6.5E-10 83.1 17.2 130 349-485 90-238 (301)
124 cd02028 UMPK_like Uridine mono 98.3 4.6E-06 1E-10 82.9 10.4 149 353-516 1-168 (179)
125 PRK00698 tmk thymidylate kinas 98.3 5.9E-05 1.3E-09 75.2 18.4 34 351-384 3-36 (205)
126 TIGR02322 phosphon_PhnN phosph 98.3 1.2E-05 2.6E-10 79.0 12.7 26 352-377 2-27 (179)
127 PRK13975 thymidylate kinase; P 98.2 2.5E-05 5.4E-10 77.7 15.0 27 351-377 2-28 (196)
128 PRK10078 ribose 1,5-bisphospho 98.2 6.5E-06 1.4E-10 81.9 10.7 25 352-376 3-27 (186)
129 PRK07667 uridine kinase; Provi 98.2 1.8E-05 4E-10 79.4 13.7 42 349-390 15-56 (193)
130 PRK08233 hypothetical protein; 98.2 1.5E-05 3.2E-10 77.9 12.8 27 350-376 2-28 (182)
131 PLN02674 adenylate kinase 98.2 8.8E-06 1.9E-10 84.9 11.5 151 351-517 31-214 (244)
132 cd02020 CMPK Cytidine monophos 98.2 1.8E-05 4E-10 74.3 12.5 145 353-527 1-146 (147)
133 PTZ00088 adenylate kinase 1; P 98.2 5.6E-06 1.2E-10 85.6 9.5 119 350-483 5-131 (229)
134 PRK02496 adk adenylate kinase; 98.2 1.1E-05 2.4E-10 79.8 10.9 136 353-516 3-152 (184)
135 TIGR03263 guanyl_kin guanylate 98.2 2.3E-05 5E-10 76.9 12.7 26 352-377 2-27 (180)
136 TIGR02173 cyt_kin_arch cytidyl 98.2 7.9E-06 1.7E-10 79.1 8.9 36 352-392 1-36 (171)
137 PRK00300 gmk guanylate kinase; 98.2 2E-05 4.4E-10 79.0 12.2 27 350-376 4-30 (205)
138 TIGR00041 DTMP_kinase thymidyl 98.1 0.00022 4.8E-09 70.8 19.0 34 351-384 3-36 (195)
139 PRK04182 cytidylate kinase; Pr 98.1 3.6E-06 7.9E-11 82.0 5.8 29 352-380 1-29 (180)
140 COG1102 Cmk Cytidylate kinase 98.1 1.1E-05 2.3E-10 78.7 8.7 127 352-513 1-134 (179)
141 PRK13808 adenylate kinase; Pro 98.1 7.7E-06 1.7E-10 88.8 8.6 146 354-516 3-161 (333)
142 PRK14737 gmk guanylate kinase; 98.1 2.8E-05 6.2E-10 77.9 11.8 27 350-376 3-29 (186)
143 PLN02459 probable adenylate ki 98.1 2.8E-05 6.1E-10 81.8 12.1 115 350-483 28-154 (261)
144 PRK14526 adenylate kinase; Pro 98.1 8.7E-06 1.9E-10 83.2 8.0 143 354-517 3-178 (211)
145 PRK13973 thymidylate kinase; P 98.1 0.00026 5.6E-09 72.2 18.8 125 351-484 3-151 (213)
146 PRK14738 gmk guanylate kinase; 98.1 3E-05 6.6E-10 78.7 11.5 26 349-374 11-36 (206)
147 PRK14529 adenylate kinase; Pro 98.1 2.6E-05 5.6E-10 80.4 11.0 114 354-483 3-127 (223)
148 PRK05416 glmZ(sRNA)-inactivati 98.1 6.6E-05 1.4E-09 80.3 14.4 106 351-491 6-115 (288)
149 PRK06547 hypothetical protein; 98.0 4.1E-05 8.9E-10 75.8 10.9 30 349-378 13-42 (172)
150 PRK07261 topology modulation p 98.0 2.3E-05 5E-10 77.3 9.0 26 353-378 2-27 (171)
151 PRK05480 uridine/cytidine kina 98.0 5.5E-05 1.2E-09 76.4 11.2 39 350-390 5-43 (209)
152 PF08303 tRNA_lig_kinase: tRNA 98.0 0.00017 3.6E-09 70.8 13.8 135 353-519 1-152 (168)
153 PF00406 ADK: Adenylate kinase 97.9 0.00016 3.5E-09 69.3 13.6 131 356-516 1-142 (151)
154 PRK08118 topology modulation p 97.9 6.7E-05 1.4E-09 73.8 10.7 30 354-383 4-33 (167)
155 COG0563 Adk Adenylate kinase a 97.9 0.00012 2.7E-09 72.9 12.1 141 353-517 2-153 (178)
156 PF13238 AAA_18: AAA domain; P 97.9 1.5E-05 3.2E-10 72.9 5.0 22 354-375 1-22 (129)
157 PF00485 PRK: Phosphoribulokin 97.9 7.5E-05 1.6E-09 74.8 10.4 150 353-517 1-178 (194)
158 PRK15453 phosphoribulokinase; 97.8 6.1E-05 1.3E-09 80.0 8.8 43 350-392 4-46 (290)
159 smart00072 GuKc Guanylate kina 97.8 0.00021 4.5E-09 71.0 12.2 25 351-375 2-26 (184)
160 PLN02924 thymidylate kinase 97.8 0.0008 1.7E-08 69.3 16.3 37 349-385 14-50 (220)
161 KOG3079 Uridylate kinase/adeny 97.7 0.00072 1.5E-08 67.4 14.3 145 349-516 6-161 (195)
162 cd02029 PRK_like Phosphoribulo 97.7 9.2E-05 2E-09 78.1 8.2 40 353-392 1-40 (277)
163 PF00625 Guanylate_kin: Guanyl 97.7 0.00053 1.2E-08 67.9 13.1 141 351-515 2-156 (183)
164 COG0541 Ffh Signal recognition 97.7 0.00037 8E-09 77.4 12.9 44 349-392 98-141 (451)
165 cd01673 dNK Deoxyribonucleosid 97.7 0.00057 1.2E-08 67.9 12.9 25 353-377 1-25 (193)
166 PRK13974 thymidylate kinase; P 97.7 0.0012 2.6E-08 67.3 15.4 29 351-379 3-31 (212)
167 KOG2134 Polynucleotide kinase 97.7 5.6E-05 1.2E-09 82.2 5.9 102 350-484 268-370 (422)
168 COG4185 Uncharacterized protei 97.7 0.00057 1.2E-08 66.8 11.9 147 351-517 2-149 (187)
169 PRK09270 nucleoside triphospha 97.6 0.00089 1.9E-08 68.9 13.8 43 348-390 30-73 (229)
170 PRK14730 coaE dephospho-CoA ki 97.6 0.00042 9.1E-09 69.9 11.0 34 352-385 2-35 (195)
171 COG0194 Gmk Guanylate kinase [ 97.6 0.00079 1.7E-08 67.4 12.5 116 350-484 3-137 (191)
172 PRK13477 bifunctional pantoate 97.6 9.1E-05 2E-09 84.8 6.7 36 350-385 283-318 (512)
173 PLN02348 phosphoribulokinase 97.6 0.0004 8.7E-09 76.9 11.4 43 348-390 46-103 (395)
174 TIGR01425 SRP54_euk signal rec 97.6 0.00049 1.1E-08 77.3 11.8 43 349-391 98-140 (429)
175 PRK07933 thymidylate kinase; V 97.6 0.0033 7.2E-08 64.3 17.0 34 352-385 1-34 (213)
176 PRK00081 coaE dephospho-CoA ki 97.6 0.0002 4.4E-09 71.9 7.7 31 352-383 3-33 (194)
177 PTZ00301 uridine kinase; Provi 97.5 0.00064 1.4E-08 69.6 11.3 155 351-517 3-179 (210)
178 TIGR00152 dephospho-CoA kinase 97.5 0.00082 1.8E-08 66.9 11.2 31 353-383 1-31 (188)
179 PF00448 SRP54: SRP54-type pro 97.5 0.0008 1.7E-08 68.1 11.1 42 351-392 1-42 (196)
180 PRK10867 signal recognition pa 97.5 0.00059 1.3E-08 76.9 11.1 44 349-392 98-142 (433)
181 COG0125 Tmk Thymidylate kinase 97.5 0.0061 1.3E-07 62.4 17.3 126 350-484 2-150 (208)
182 COG0572 Udk Uridine kinase [Nu 97.5 0.00076 1.7E-08 69.2 10.5 42 349-392 6-47 (218)
183 cd02024 NRK1 Nicotinamide ribo 97.5 0.00054 1.2E-08 68.9 9.3 34 353-390 1-34 (187)
184 cd02030 NDUO42 NADH:Ubiquinone 97.5 0.0019 4.1E-08 66.2 13.4 28 353-380 1-28 (219)
185 COG2074 2-phosphoglycerate kin 97.4 0.00065 1.4E-08 70.7 9.8 141 334-484 73-232 (299)
186 cd02023 UMPK Uridine monophosp 97.4 0.0016 3.5E-08 65.2 12.5 37 353-391 1-37 (198)
187 PRK00771 signal recognition pa 97.4 0.00055 1.2E-08 77.3 10.0 44 349-392 93-136 (437)
188 TIGR00064 ftsY signal recognit 97.4 0.00096 2.1E-08 70.9 11.0 44 349-392 70-113 (272)
189 PLN02842 nucleotide kinase 97.4 0.00088 1.9E-08 76.5 11.2 25 355-379 1-25 (505)
190 PF02223 Thymidylate_kin: Thym 97.4 0.014 3E-07 57.7 18.1 26 356-381 1-26 (186)
191 cd02022 DPCK Dephospho-coenzym 97.4 0.0026 5.5E-08 63.0 12.8 34 353-392 1-34 (179)
192 COG0237 CoaE Dephospho-CoA kin 97.3 0.0016 3.6E-08 66.2 11.2 36 351-392 2-37 (201)
193 cd02025 PanK Pantothenate kina 97.3 0.00086 1.9E-08 69.0 9.2 38 353-390 1-40 (220)
194 KOG0780 Signal recognition par 97.3 0.001 2.2E-08 72.8 9.7 104 346-455 96-205 (483)
195 TIGR00959 ffh signal recogniti 97.3 0.0017 3.6E-08 73.3 11.3 44 349-392 97-141 (428)
196 cd03115 SRP The signal recogni 97.3 0.0033 7.3E-08 61.4 12.1 40 353-392 2-41 (173)
197 PRK13976 thymidylate kinase; P 97.2 0.011 2.3E-07 60.6 15.9 27 352-378 1-27 (209)
198 PRK05439 pantothenate kinase; 97.2 0.0014 3.1E-08 70.9 9.9 43 348-390 83-127 (311)
199 PLN02165 adenylate isopentenyl 97.2 0.0011 2.3E-08 72.3 8.9 34 350-383 42-75 (334)
200 PRK14974 cell division protein 97.2 0.0016 3.5E-08 71.2 10.4 44 349-392 138-181 (336)
201 COG1428 Deoxynucleoside kinase 97.2 0.0048 1E-07 62.9 12.7 26 351-376 4-29 (216)
202 TIGR00235 udk uridine kinase. 97.2 0.0059 1.3E-07 61.8 13.4 39 350-390 5-43 (207)
203 cd02019 NK Nucleoside/nucleoti 97.2 0.00045 9.7E-09 58.0 4.2 31 353-385 1-31 (69)
204 PF03668 ATP_bind_2: P-loop AT 97.2 0.0054 1.2E-07 65.3 13.1 120 353-507 3-126 (284)
205 PRK10416 signal recognition pa 97.1 0.0028 6E-08 68.9 10.9 43 349-391 112-154 (318)
206 PRK07429 phosphoribulokinase; 97.1 0.0028 6.1E-08 69.1 11.0 41 348-390 5-45 (327)
207 COG3896 Chloramphenicol 3-O-ph 97.1 0.0041 8.8E-08 60.8 10.5 134 350-490 22-168 (205)
208 COG2019 AdkA Archaeal adenylat 97.1 0.0057 1.2E-07 60.3 11.5 36 351-390 4-39 (189)
209 PRK14733 coaE dephospho-CoA ki 97.1 0.0012 2.6E-08 67.4 7.2 36 350-385 5-40 (204)
210 cd07061 HP_HAP_like Histidine 97.0 0.00088 1.9E-08 69.1 5.7 58 560-626 4-69 (242)
211 PRK00023 cmk cytidylate kinase 97.0 0.0039 8.5E-08 64.3 10.1 34 351-384 4-37 (225)
212 PRK14731 coaE dephospho-CoA ki 97.0 0.0061 1.3E-07 62.0 11.3 33 350-383 4-36 (208)
213 PRK14734 coaE dephospho-CoA ki 96.9 0.024 5.1E-07 57.5 14.9 34 352-391 2-35 (200)
214 PF01121 CoaE: Dephospho-CoA k 96.9 0.0084 1.8E-07 60.0 11.5 133 352-511 1-160 (180)
215 PF00004 AAA: ATPase family as 96.9 0.0045 9.7E-08 56.6 8.8 32 354-388 1-32 (132)
216 cd00071 GMPK Guanosine monopho 96.9 0.0024 5.2E-08 60.7 7.2 24 353-376 1-24 (137)
217 KOG3347 Predicted nucleotide k 96.9 0.0068 1.5E-07 58.8 10.0 35 353-392 9-43 (176)
218 KOG4622 Predicted nucleotide k 96.9 0.0023 5E-08 64.2 6.9 120 353-478 3-139 (291)
219 PRK14490 putative bifunctional 96.9 0.0014 3.1E-08 72.4 5.9 35 350-385 4-38 (369)
220 PRK09435 membrane ATPase/prote 96.8 0.0054 1.2E-07 67.0 10.0 41 348-388 53-93 (332)
221 PTZ00451 dephospho-CoA kinase; 96.8 0.0087 1.9E-07 62.7 10.8 33 352-384 2-34 (244)
222 PHA03132 thymidine kinase; Pro 96.8 0.094 2E-06 61.2 20.0 25 351-375 257-281 (580)
223 PRK09169 hypothetical protein; 96.8 0.0037 7.9E-08 80.4 9.1 139 351-512 2110-2256(2316)
224 PLN02772 guanylate kinase 96.8 0.013 2.8E-07 65.2 12.4 27 350-376 134-160 (398)
225 COG1936 Predicted nucleotide k 96.8 0.0061 1.3E-07 60.4 8.7 26 352-378 1-26 (180)
226 PRK14732 coaE dephospho-CoA ki 96.8 0.0071 1.5E-07 61.2 9.5 21 353-373 1-21 (196)
227 PLN02318 phosphoribulokinase/u 96.7 0.011 2.5E-07 68.7 12.0 41 347-391 61-101 (656)
228 TIGR00017 cmk cytidylate kinas 96.7 0.011 2.3E-07 60.9 10.8 32 351-382 2-33 (217)
229 cd01120 RecA-like_NTPases RecA 96.7 0.0084 1.8E-07 56.4 9.2 36 353-388 1-36 (165)
230 PHA00729 NTP-binding motif con 96.7 0.011 2.3E-07 61.3 10.5 26 351-376 17-42 (226)
231 PRK11889 flhF flagellar biosyn 96.7 0.0072 1.6E-07 67.4 9.8 43 349-391 239-281 (436)
232 KOG1533 Predicted GTPase [Gene 96.7 0.016 3.5E-07 60.0 11.4 117 351-474 2-147 (290)
233 PLN02422 dephospho-CoA kinase 96.6 0.026 5.7E-07 58.8 12.6 26 353-379 3-28 (232)
234 smart00382 AAA ATPases associa 96.5 0.0051 1.1E-07 55.2 6.1 35 352-386 3-37 (148)
235 PRK05800 cobU adenosylcobinami 96.5 0.0045 9.8E-08 61.2 6.1 24 353-376 3-26 (170)
236 COG0552 FtsY Signal recognitio 96.5 0.017 3.7E-07 62.6 10.8 92 348-467 136-229 (340)
237 COG1618 Predicted nucleotide k 96.5 0.02 4.4E-07 56.3 10.0 108 351-462 5-133 (179)
238 PF06309 Torsin: Torsin; Inte 96.5 0.0057 1.2E-07 57.8 6.0 47 339-385 41-87 (127)
239 cd02026 PRK Phosphoribulokinas 96.4 0.012 2.7E-07 62.5 9.1 36 353-390 1-36 (273)
240 PRK14960 DNA polymerase III su 96.4 0.061 1.3E-06 63.6 15.3 151 350-507 36-190 (702)
241 KOG3220 Similar to bacterial d 96.4 0.044 9.6E-07 55.7 12.2 114 352-482 2-146 (225)
242 PRK12323 DNA polymerase III su 96.4 0.045 9.7E-07 64.5 13.8 151 350-507 37-196 (700)
243 PRK14956 DNA polymerase III su 96.3 0.057 1.2E-06 61.7 14.3 153 350-509 39-195 (484)
244 PLN02840 tRNA dimethylallyltra 96.3 0.0059 1.3E-07 68.5 6.1 35 349-383 19-53 (421)
245 PRK03333 coaE dephospho-CoA ki 96.3 0.022 4.8E-07 63.7 10.5 31 353-384 3-33 (395)
246 cd01394 radB RadB. The archaea 96.3 0.06 1.3E-06 54.6 12.8 39 349-387 17-55 (218)
247 PRK06893 DNA replication initi 96.3 0.074 1.6E-06 54.9 13.5 35 353-387 41-75 (229)
248 COG3709 Uncharacterized compon 96.2 0.04 8.7E-07 54.3 10.6 121 351-485 5-138 (192)
249 PRK09518 bifunctional cytidyla 96.2 0.015 3.3E-07 69.8 9.5 31 353-383 3-33 (712)
250 PRK12377 putative replication 96.2 0.054 1.2E-06 57.0 12.3 41 352-392 102-142 (248)
251 KOG0738 AAA+-type ATPase [Post 96.2 0.029 6.2E-07 61.9 10.4 58 315-376 212-270 (491)
252 PRK07003 DNA polymerase III su 96.2 0.035 7.6E-07 66.3 12.0 152 350-509 37-193 (830)
253 PRK00091 miaA tRNA delta(2)-is 96.2 0.0079 1.7E-07 65.1 6.2 29 350-378 3-31 (307)
254 cd02861 E_set_proteins_like E 96.2 0.016 3.6E-07 50.2 7.0 54 32-96 3-56 (82)
255 PRK12724 flagellar biosynthesi 96.2 0.035 7.7E-07 62.4 11.4 43 350-392 222-265 (432)
256 PRK12726 flagellar biosynthesi 96.2 0.022 4.8E-07 63.3 9.6 43 350-392 205-247 (407)
257 PRK14955 DNA polymerase III su 96.2 0.087 1.9E-06 59.0 14.5 28 350-377 37-64 (397)
258 CHL00181 cbbX CbbX; Provisiona 96.2 0.13 2.8E-06 55.2 15.3 31 350-380 58-88 (287)
259 cd00009 AAA The AAA+ (ATPases 96.2 0.04 8.6E-07 50.1 9.8 36 351-386 19-54 (151)
260 TIGR03420 DnaA_homol_Hda DnaA 96.1 0.036 7.7E-07 56.2 10.0 39 350-388 37-75 (226)
261 PRK13768 GTPase; Provisional 96.1 0.013 2.7E-07 61.6 6.9 38 351-388 2-39 (253)
262 PRK14949 DNA polymerase III su 96.1 0.074 1.6E-06 64.7 13.8 28 350-377 37-64 (944)
263 PRK14962 DNA polymerase III su 96.0 0.073 1.6E-06 61.0 13.0 28 350-377 35-62 (472)
264 PLN02796 D-glycerate 3-kinase 96.0 0.0076 1.6E-07 66.0 4.7 42 349-390 98-139 (347)
265 PRK14961 DNA polymerase III su 96.0 0.12 2.7E-06 57.0 14.3 27 350-376 37-63 (363)
266 PF13173 AAA_14: AAA domain 96.0 0.051 1.1E-06 50.7 9.7 82 352-456 3-84 (128)
267 PRK08084 DNA replication initi 96.0 0.079 1.7E-06 55.0 12.0 37 353-389 47-83 (235)
268 PRK09361 radB DNA repair and r 95.9 0.1 2.2E-06 53.2 12.6 40 349-388 21-60 (225)
269 TIGR00554 panK_bact pantothena 95.9 0.0094 2E-07 64.0 5.0 43 348-390 59-103 (290)
270 PRK08116 hypothetical protein; 95.9 0.062 1.3E-06 57.0 11.1 40 351-390 114-153 (268)
271 PRK07952 DNA replication prote 95.9 0.087 1.9E-06 55.3 11.9 39 352-390 100-138 (244)
272 cd00984 DnaB_C DnaB helicase C 95.9 0.11 2.4E-06 53.4 12.5 38 350-387 12-50 (242)
273 PLN03025 replication factor C 95.9 0.072 1.6E-06 57.7 11.7 23 354-376 37-59 (319)
274 PRK11860 bifunctional 3-phosph 95.8 0.037 8E-07 66.0 10.1 34 351-384 442-475 (661)
275 TIGR03499 FlhF flagellar biosy 95.8 0.0098 2.1E-07 63.5 4.8 42 350-391 193-236 (282)
276 PLN03046 D-glycerate 3-kinase; 95.8 0.01 2.2E-07 66.5 4.8 43 348-390 209-251 (460)
277 TIGR02881 spore_V_K stage V sp 95.8 0.089 1.9E-06 55.3 11.7 29 351-379 42-70 (261)
278 PRK10751 molybdopterin-guanine 95.8 0.013 2.8E-07 58.4 5.0 36 350-385 5-40 (173)
279 PF03029 ATP_bind_1: Conserved 95.8 0.0082 1.8E-07 62.6 3.7 33 356-388 1-33 (238)
280 PRK05973 replicative DNA helic 95.8 0.011 2.4E-07 61.7 4.7 38 350-387 63-100 (237)
281 KOG0744 AAA+-type ATPase [Post 95.8 0.01 2.2E-07 64.1 4.3 28 350-377 176-203 (423)
282 TIGR03709 PPK2_rel_1 polyphosp 95.7 0.088 1.9E-06 55.9 11.4 110 349-484 54-183 (264)
283 COG1660 Predicted P-loop-conta 95.7 0.1 2.2E-06 55.0 11.5 25 353-378 3-27 (286)
284 smart00763 AAA_PrkA PrkA AAA d 95.7 0.0096 2.1E-07 65.6 4.1 30 348-377 75-104 (361)
285 TIGR02237 recomb_radB DNA repa 95.7 0.095 2.1E-06 52.7 11.0 37 350-386 11-47 (209)
286 KOG1532 GTPase XAB1, interacts 95.7 0.014 2.9E-07 61.8 4.9 41 348-388 16-56 (366)
287 PRK13695 putative NTPase; Prov 95.7 0.11 2.3E-06 51.0 11.1 29 353-381 2-30 (174)
288 PF13521 AAA_28: AAA domain; P 95.7 0.041 8.9E-07 53.3 7.9 21 354-374 2-22 (163)
289 PF13401 AAA_22: AAA domain; P 95.6 0.032 6.8E-07 51.3 6.8 28 350-377 3-30 (131)
290 PRK08727 hypothetical protein; 95.6 0.14 3E-06 53.0 12.3 36 353-388 43-78 (233)
291 TIGR00176 mobB molybdopterin-g 95.6 0.012 2.6E-07 57.4 4.1 33 353-385 1-33 (155)
292 PRK14959 DNA polymerase III su 95.6 0.2 4.2E-06 59.2 14.7 140 351-498 38-183 (624)
293 KOG3308 Uncharacterized protei 95.6 0.019 4.1E-07 58.2 5.5 36 351-390 4-39 (225)
294 cd01124 KaiC KaiC is a circadi 95.6 0.12 2.6E-06 50.6 11.0 35 353-387 1-35 (187)
295 PRK08691 DNA polymerase III su 95.5 0.18 3.8E-06 60.1 14.0 29 349-377 36-64 (709)
296 PF05496 RuvB_N: Holliday junc 95.5 0.038 8.3E-07 57.2 7.6 24 353-376 52-75 (233)
297 PF00328 His_Phos_2: Histidine 95.5 0.026 5.6E-07 60.1 6.7 45 582-626 61-112 (347)
298 PRK08181 transposase; Validate 95.5 0.079 1.7E-06 56.4 10.2 39 352-390 107-145 (269)
299 TIGR02880 cbbX_cfxQ probable R 95.5 0.1 2.3E-06 55.7 11.1 29 352-380 59-87 (284)
300 PRK14722 flhF flagellar biosyn 95.5 0.19 4.1E-06 55.9 13.4 42 350-391 136-179 (374)
301 PRK12723 flagellar biosynthesi 95.5 0.11 2.4E-06 58.1 11.6 44 349-392 172-219 (388)
302 PRK05642 DNA replication initi 95.5 0.1 2.3E-06 54.0 10.7 39 352-390 46-84 (234)
303 cd01122 GP4d_helicase GP4d_hel 95.5 0.1 2.2E-06 54.7 10.6 38 350-387 29-67 (271)
304 PHA02544 44 clamp loader, smal 95.5 0.35 7.6E-06 51.8 15.0 29 348-376 40-68 (316)
305 PRK00149 dnaA chromosomal repl 95.4 0.22 4.7E-06 56.6 14.1 38 353-390 150-189 (450)
306 KOG0730 AAA+-type ATPase [Post 95.4 0.064 1.4E-06 62.6 9.7 28 349-376 466-493 (693)
307 PRK07994 DNA polymerase III su 95.4 0.24 5.3E-06 58.8 14.6 150 350-507 37-191 (647)
308 PLN02748 tRNA dimethylallyltra 95.4 0.02 4.4E-07 65.2 5.5 92 349-445 20-123 (468)
309 TIGR03707 PPK2_P_aer polyphosp 95.4 0.33 7.1E-06 50.6 13.9 110 349-484 29-158 (230)
310 PRK05703 flhF flagellar biosyn 95.4 0.12 2.7E-06 58.4 11.6 42 351-392 221-264 (424)
311 PRK05896 DNA polymerase III su 95.4 0.22 4.7E-06 58.6 13.8 148 350-503 37-188 (605)
312 PRK14957 DNA polymerase III su 95.3 0.23 5.1E-06 57.9 14.0 28 350-377 37-64 (546)
313 PRK14958 DNA polymerase III su 95.3 0.25 5.4E-06 57.2 14.2 28 350-377 37-64 (509)
314 TIGR01618 phage_P_loop phage n 95.3 0.11 2.3E-06 53.8 10.0 23 350-372 11-33 (220)
315 cd01983 Fer4_NifH The Fer4_Nif 95.3 0.02 4.3E-07 48.9 4.0 34 353-386 1-34 (99)
316 PRK07764 DNA polymerase III su 95.3 0.2 4.4E-06 61.0 13.9 151 350-507 36-192 (824)
317 PRK04296 thymidine kinase; Pro 95.3 0.11 2.4E-06 52.1 9.9 36 351-386 2-37 (190)
318 PRK08939 primosomal protein Dn 95.3 0.34 7.3E-06 52.5 14.3 130 351-509 156-292 (306)
319 PF13189 Cytidylate_kin2: Cyti 95.3 0.13 2.9E-06 51.0 10.4 33 353-385 1-33 (179)
320 KOG3877 NADH:ubiquinone oxidor 95.3 0.52 1.1E-05 50.2 14.9 43 339-381 59-101 (393)
321 cd03116 MobB Molybdenum is an 95.3 0.023 5E-07 55.7 4.9 34 352-385 2-35 (159)
322 PRK06645 DNA polymerase III su 95.3 0.2 4.4E-06 57.9 13.2 27 351-377 43-69 (507)
323 PRK09087 hypothetical protein; 95.3 0.089 1.9E-06 54.4 9.4 117 353-484 46-167 (226)
324 PRK14951 DNA polymerase III su 95.3 0.32 6.8E-06 57.6 14.9 29 349-377 36-64 (618)
325 PRK13342 recombination factor 95.3 0.13 2.8E-06 57.9 11.3 24 353-376 38-61 (413)
326 cd02034 CooC The accessory pro 95.3 0.024 5.2E-07 52.6 4.6 35 354-388 2-36 (116)
327 PRK08099 bifunctional DNA-bind 95.2 0.059 1.3E-06 60.5 8.5 29 350-378 218-246 (399)
328 TIGR02397 dnaX_nterm DNA polym 95.2 0.33 7.2E-06 52.7 14.0 29 349-377 34-62 (355)
329 TIGR00750 lao LAO/AO transport 95.2 0.025 5.4E-07 60.9 5.1 40 349-388 32-71 (300)
330 TIGR00174 miaA tRNA isopenteny 95.2 0.018 3.8E-07 61.8 3.9 25 353-377 1-25 (287)
331 PRK06921 hypothetical protein; 95.1 0.24 5.3E-06 52.5 12.4 37 351-387 117-154 (266)
332 PF03796 DnaB_C: DnaB-like hel 95.1 0.13 2.8E-06 53.8 10.2 109 350-467 18-138 (259)
333 PRK06526 transposase; Provisio 95.1 0.091 2E-06 55.4 9.0 37 351-387 98-134 (254)
334 COG0283 Cmk Cytidylate kinase 95.1 0.017 3.7E-07 59.2 3.4 32 352-383 5-36 (222)
335 TIGR03877 thermo_KaiC_1 KaiC d 95.0 0.15 3.3E-06 52.8 10.3 37 350-386 20-56 (237)
336 cd01131 PilT Pilus retraction 95.0 0.19 4.2E-06 50.6 10.8 25 353-377 3-27 (198)
337 cd04163 Era Era subfamily. Er 95.0 0.31 6.8E-06 45.3 11.6 24 351-374 3-26 (168)
338 TIGR03708 poly_P_AMP_trns poly 95.0 0.35 7.6E-06 55.7 13.9 111 348-484 37-167 (493)
339 PF03205 MobB: Molybdopterin g 95.0 0.03 6.6E-07 53.7 4.6 33 353-385 2-34 (140)
340 PRK04195 replication factor C 95.0 0.094 2E-06 60.2 9.4 37 351-390 39-75 (482)
341 cd02859 AMPKbeta_GBD_like AMP- 95.0 0.072 1.6E-06 46.1 6.5 52 32-95 3-54 (79)
342 PF07728 AAA_5: AAA domain (dy 95.0 0.021 4.6E-07 53.5 3.5 23 354-376 2-24 (139)
343 PRK14964 DNA polymerase III su 95.0 0.32 7E-06 56.0 13.6 28 350-377 34-61 (491)
344 COG1072 CoaA Panthothenate kin 95.0 0.11 2.5E-06 55.1 9.1 42 346-387 77-120 (283)
345 TIGR00150 HI0065_YjeE ATPase, 95.0 0.022 4.7E-07 54.4 3.4 29 350-378 21-49 (133)
346 COG4175 ProV ABC-type proline/ 94.9 0.11 2.4E-06 56.2 8.9 26 350-375 53-78 (386)
347 COG2256 MGS1 ATPase related to 94.9 0.036 7.8E-07 61.4 5.4 41 353-393 50-92 (436)
348 PRK12727 flagellar biosynthesi 94.9 0.24 5.1E-06 57.5 12.2 42 350-391 349-392 (559)
349 PF05729 NACHT: NACHT domain 94.9 0.024 5.2E-07 53.7 3.6 27 353-379 2-28 (166)
350 PF00931 NB-ARC: NB-ARC domain 94.9 0.15 3.2E-06 53.5 9.9 28 349-376 17-44 (287)
351 PRK08903 DnaA regulatory inact 94.9 0.15 3.2E-06 52.2 9.6 37 352-388 43-79 (227)
352 PF13481 AAA_25: AAA domain; P 94.9 0.25 5.5E-06 48.7 11.0 27 350-376 31-57 (193)
353 PRK14952 DNA polymerase III su 94.9 0.5 1.1E-05 55.6 15.0 151 349-508 33-191 (584)
354 PRK09111 DNA polymerase III su 94.9 0.32 7E-06 57.4 13.4 29 350-378 45-73 (598)
355 PRK14494 putative molybdopteri 94.8 0.044 9.5E-07 57.0 5.6 33 353-385 3-35 (229)
356 PRK14965 DNA polymerase III su 94.8 0.44 9.6E-06 56.0 14.5 142 349-498 36-183 (576)
357 PRK05201 hslU ATP-dependent pr 94.8 0.21 4.5E-06 56.4 11.1 31 351-381 50-80 (443)
358 PF07724 AAA_2: AAA domain (Cd 94.8 0.048 1E-06 54.1 5.5 40 351-390 3-43 (171)
359 PRK09183 transposase/IS protei 94.8 0.3 6.5E-06 51.6 11.7 40 351-390 102-141 (259)
360 PRK14087 dnaA chromosomal repl 94.7 0.66 1.4E-05 53.0 15.2 133 354-508 144-290 (450)
361 cd03246 ABCC_Protease_Secretio 94.7 0.24 5.2E-06 48.5 10.3 26 351-376 28-53 (173)
362 PLN00020 ribulose bisphosphate 94.7 0.11 2.3E-06 57.7 8.4 40 348-390 145-184 (413)
363 PRK04328 hypothetical protein; 94.7 0.19 4.1E-06 52.6 10.0 37 350-386 22-58 (249)
364 PF01695 IstB_IS21: IstB-like 94.6 0.044 9.6E-07 54.6 4.9 42 351-392 47-88 (178)
365 PRK14963 DNA polymerase III su 94.6 0.25 5.3E-06 57.2 11.6 29 349-377 34-62 (504)
366 TIGR03600 phage_DnaB phage rep 94.6 0.39 8.5E-06 54.0 13.0 110 349-467 192-313 (421)
367 PRK06620 hypothetical protein; 94.6 0.34 7.4E-06 49.7 11.4 25 352-376 45-69 (214)
368 PRK06835 DNA replication prote 94.6 0.32 6.9E-06 53.3 11.7 39 352-390 184-222 (329)
369 TIGR02655 circ_KaiC circadian 94.6 0.15 3.3E-06 58.5 9.7 48 341-388 253-300 (484)
370 cd03114 ArgK-like The function 94.6 0.036 7.9E-07 53.5 4.0 36 353-388 1-36 (148)
371 PRK14969 DNA polymerase III su 94.5 0.35 7.6E-06 56.2 12.6 28 350-377 37-64 (527)
372 PRK14088 dnaA chromosomal repl 94.5 0.67 1.5E-05 52.7 14.6 37 354-390 133-171 (440)
373 TIGR01241 FtsH_fam ATP-depende 94.5 0.43 9.3E-06 55.0 13.2 27 350-376 87-113 (495)
374 PF00910 RNA_helicase: RNA hel 94.5 0.029 6.4E-07 50.9 2.9 24 354-377 1-24 (107)
375 COG5324 Uncharacterized conser 94.5 0.18 3.9E-06 56.9 9.4 146 350-527 373-528 (758)
376 PRK14950 DNA polymerase III su 94.4 0.4 8.6E-06 56.5 13.0 27 350-376 37-63 (585)
377 KOG0991 Replication factor C, 94.4 0.23 5E-06 51.8 9.4 136 348-508 46-187 (333)
378 PRK11331 5-methylcytosine-spec 94.4 0.077 1.7E-06 60.2 6.6 26 352-377 195-220 (459)
379 PRK13341 recombination factor 94.4 0.53 1.1E-05 56.8 14.0 24 353-376 54-77 (725)
380 PRK00440 rfc replication facto 94.4 0.26 5.6E-06 52.5 10.4 24 354-377 41-64 (319)
381 PRK07133 DNA polymerase III su 94.4 0.65 1.4E-05 55.8 14.5 29 349-377 38-66 (725)
382 TIGR00635 ruvB Holliday juncti 94.4 0.32 6.9E-06 51.8 11.1 25 352-376 31-55 (305)
383 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.27 5.8E-06 51.9 10.3 37 350-386 35-71 (259)
384 TIGR01650 PD_CobS cobaltochela 94.3 0.03 6.5E-07 61.0 3.1 27 354-380 67-93 (327)
385 KOG1969 DNA replication checkp 94.3 0.037 8.1E-07 65.1 4.0 42 348-392 323-364 (877)
386 PRK06731 flhF flagellar biosyn 94.3 0.46 9.9E-06 50.7 11.9 41 351-391 75-115 (270)
387 PF13191 AAA_16: AAA ATPase do 94.3 0.041 8.9E-07 53.4 3.7 31 348-378 21-51 (185)
388 PTZ00361 26 proteosome regulat 94.3 1.1 2.3E-05 51.1 15.4 29 350-378 216-244 (438)
389 KOG3078 Adenylate kinase [Nucl 94.2 0.13 2.9E-06 53.5 7.4 153 350-517 14-194 (235)
390 TIGR02012 tigrfam_recA protein 94.2 0.4 8.6E-06 52.4 11.3 38 350-387 54-91 (321)
391 TIGR03015 pepcterm_ATPase puta 94.2 1.4 3E-05 45.9 15.1 26 351-376 43-68 (269)
392 PHA02575 1 deoxynucleoside mon 94.2 0.033 7.2E-07 57.6 2.8 23 352-374 1-23 (227)
393 KOG2170 ATPase of the AAA+ sup 94.1 0.11 2.4E-06 55.8 6.7 43 343-385 102-144 (344)
394 PF13245 AAA_19: Part of AAA d 94.1 0.054 1.2E-06 46.6 3.6 25 352-376 11-35 (76)
395 PRK05636 replicative DNA helic 94.1 0.35 7.7E-06 55.9 11.2 142 349-514 263-415 (505)
396 PRK12402 replication factor C 94.0 0.38 8.2E-06 51.7 10.9 38 353-390 38-77 (337)
397 TIGR00362 DnaA chromosomal rep 94.0 0.73 1.6E-05 51.5 13.3 38 353-390 138-177 (405)
398 cd04156 ARLTS1 ARLTS1 subfamil 94.0 0.071 1.5E-06 50.5 4.5 21 354-374 2-22 (160)
399 TIGR00665 DnaB replicative DNA 93.9 0.54 1.2E-05 53.0 12.3 109 350-467 194-313 (434)
400 COG4240 Predicted kinase [Gene 93.9 0.081 1.8E-06 54.8 5.0 42 349-390 48-90 (300)
401 COG1419 FlhF Flagellar GTP-bin 93.9 0.93 2E-05 50.8 13.5 43 350-392 202-246 (407)
402 PRK12269 bifunctional cytidyla 93.9 0.035 7.7E-07 67.7 2.8 32 351-382 34-65 (863)
403 PRK14723 flhF flagellar biosyn 93.9 0.51 1.1E-05 56.9 12.4 42 350-391 184-227 (767)
404 cd00983 recA RecA is a bacter 93.9 0.49 1.1E-05 51.8 11.2 38 350-387 54-91 (325)
405 cd01895 EngA2 EngA2 subfamily. 93.8 0.19 4E-06 47.5 7.2 24 351-374 2-25 (174)
406 PF03266 NTPase_1: NTPase; In 93.8 0.069 1.5E-06 52.8 4.3 26 354-379 2-27 (168)
407 KOG2004 Mitochondrial ATP-depe 93.8 0.076 1.6E-06 62.5 5.2 34 348-381 435-468 (906)
408 PRK14954 DNA polymerase III su 93.8 0.79 1.7E-05 54.4 13.7 30 349-378 36-65 (620)
409 KOG1384 tRNA delta(2)-isopente 93.8 0.29 6.3E-06 53.2 9.2 129 350-484 6-160 (348)
410 PRK14948 DNA polymerase III su 93.8 0.46 1E-05 56.3 11.7 25 353-377 40-64 (620)
411 TIGR00390 hslU ATP-dependent p 93.8 0.044 9.6E-07 61.6 3.1 34 350-383 46-79 (441)
412 COG0470 HolB ATPase involved i 93.7 0.3 6.4E-06 52.0 9.3 27 350-376 23-49 (325)
413 PRK08760 replicative DNA helic 93.7 0.51 1.1E-05 54.3 11.7 110 349-467 227-347 (476)
414 KOG0742 AAA+-type ATPase [Post 93.7 0.61 1.3E-05 52.1 11.5 127 259-390 274-420 (630)
415 cd01121 Sms Sms (bacterial rad 93.7 0.5 1.1E-05 52.6 11.2 38 350-387 81-118 (372)
416 PF01745 IPT: Isopentenyl tran 93.7 0.2 4.2E-06 51.7 7.2 124 352-484 2-140 (233)
417 PRK06305 DNA polymerase III su 93.6 0.92 2E-05 51.8 13.5 28 350-377 38-65 (451)
418 PRK05707 DNA polymerase III su 93.6 1.2 2.5E-05 48.9 13.7 145 348-499 19-171 (328)
419 PRK11823 DNA repair protein Ra 93.6 0.64 1.4E-05 53.0 12.1 38 350-387 79-116 (446)
420 PRK13886 conjugal transfer pro 93.6 0.62 1.3E-05 48.9 11.0 109 351-468 3-122 (241)
421 cd01393 recA_like RecA is a b 93.6 0.51 1.1E-05 47.9 10.2 27 350-376 18-44 (226)
422 COG1855 ATPase (PilT family) [ 93.6 0.06 1.3E-06 60.4 3.6 34 352-385 264-297 (604)
423 PRK00411 cdc6 cell division co 93.5 1.5 3.2E-05 48.5 14.6 30 349-378 53-82 (394)
424 PRK14086 dnaA chromosomal repl 93.5 0.76 1.6E-05 54.2 12.6 37 354-390 317-355 (617)
425 KOG0734 AAA+-type ATPase conta 93.5 0.13 2.7E-06 59.0 6.0 26 349-374 335-360 (752)
426 COG4615 PvdE ABC-type sideroph 93.4 0.2 4.2E-06 55.8 7.2 47 350-396 348-401 (546)
427 PF09848 DUF2075: Uncharacteri 93.4 0.5 1.1E-05 51.9 10.6 25 351-375 1-25 (352)
428 PRK14493 putative bifunctional 93.4 0.092 2E-06 56.0 4.7 32 353-385 3-34 (274)
429 PF02492 cobW: CobW/HypB/UreG, 93.4 0.099 2.1E-06 51.8 4.6 32 353-385 2-33 (178)
430 cd00154 Rab Rab family. Rab G 93.4 0.095 2.1E-06 48.5 4.2 21 354-374 3-23 (159)
431 PRK06321 replicative DNA helic 93.4 0.83 1.8E-05 52.5 12.6 110 349-467 224-344 (472)
432 PF06745 KaiC: KaiC; InterPro 93.4 0.29 6.3E-06 49.9 8.1 37 350-386 18-55 (226)
433 TIGR00416 sms DNA repair prote 93.4 0.19 4.1E-06 57.4 7.4 39 349-387 92-130 (454)
434 PRK08006 replicative DNA helic 93.3 0.86 1.9E-05 52.3 12.6 110 350-467 223-344 (471)
435 PRK05595 replicative DNA helic 93.3 0.78 1.7E-05 52.1 12.2 110 349-467 199-319 (444)
436 PRK05563 DNA polymerase III su 93.2 1.2 2.7E-05 52.2 13.9 27 350-376 37-63 (559)
437 cd02854 Glycogen_branching_enz 93.2 0.39 8.4E-06 43.5 7.8 61 32-99 6-71 (99)
438 TIGR01243 CDC48 AAA family ATP 93.2 1.3 2.8E-05 53.6 14.5 28 350-377 486-513 (733)
439 smart00178 SAR Sar1p-like memb 93.2 0.17 3.7E-06 49.9 6.0 24 350-373 16-39 (184)
440 cd02035 ArsA ArsA ATPase funct 93.2 0.091 2E-06 53.7 4.1 36 353-388 1-36 (217)
441 cd01887 IF2_eIF5B IF2/eIF5B (i 93.2 0.37 8.1E-06 45.7 8.1 22 353-374 2-23 (168)
442 cd04169 RF3 RF3 subfamily. Pe 93.1 1.1 2.4E-05 47.5 12.3 24 353-376 4-27 (267)
443 COG1763 MobB Molybdopterin-gua 93.1 0.11 2.3E-06 51.3 4.3 35 351-385 2-36 (161)
444 PRK06067 flagellar accessory p 93.1 0.48 1E-05 48.7 9.3 38 350-387 24-61 (234)
445 PRK08506 replicative DNA helic 93.1 0.75 1.6E-05 52.8 11.7 110 349-467 190-310 (472)
446 PRK06995 flhF flagellar biosyn 93.1 0.097 2.1E-06 60.0 4.5 42 350-391 255-298 (484)
447 cd00878 Arf_Arl Arf (ADP-ribos 93.1 0.14 3E-06 48.4 4.9 21 354-374 2-22 (158)
448 TIGR03598 GTPase_YsxC ribosome 93.1 1 2.2E-05 44.1 11.2 25 350-374 17-41 (179)
449 COG1484 DnaC DNA replication p 93.0 0.12 2.6E-06 54.5 4.8 41 350-390 104-144 (254)
450 PRK15455 PrkA family serine pr 93.0 0.079 1.7E-06 61.7 3.6 31 348-378 100-130 (644)
451 TIGR02782 TrbB_P P-type conjug 93.0 0.63 1.4E-05 50.3 10.3 120 351-483 132-252 (299)
452 COG0466 Lon ATP-dependent Lon 93.0 0.15 3.2E-06 60.3 5.7 40 350-392 349-388 (782)
453 TIGR02640 gas_vesic_GvpN gas v 92.9 0.076 1.6E-06 56.0 3.2 24 353-376 23-46 (262)
454 TIGR00073 hypB hydrogenase acc 92.9 0.11 2.4E-06 52.6 4.2 28 349-376 20-47 (207)
455 COG1132 MdlB ABC-type multidru 92.9 0.34 7.4E-06 56.5 8.8 109 351-465 355-489 (567)
456 TIGR00382 clpX endopeptidase C 92.9 0.2 4.4E-06 56.4 6.6 25 352-376 117-141 (413)
457 TIGR03689 pup_AAA proteasome A 92.9 0.2 4.2E-06 58.0 6.6 28 351-378 216-243 (512)
458 PTZ00454 26S protease regulato 92.9 0.32 7E-06 54.6 8.2 27 350-376 178-204 (398)
459 PF07726 AAA_3: ATPase family 92.9 0.048 1E-06 51.8 1.4 24 354-377 2-25 (131)
460 cd04139 RalA_RalB RalA/RalB su 92.9 0.082 1.8E-06 49.8 3.0 20 354-373 3-22 (164)
461 PF03976 PPK2: Polyphosphate k 92.9 0.19 4E-06 52.3 5.9 112 350-488 30-161 (228)
462 CHL00195 ycf46 Ycf46; Provisio 92.9 0.3 6.5E-06 56.3 8.1 28 350-377 258-285 (489)
463 PRK10536 hypothetical protein; 92.8 0.91 2E-05 48.2 11.0 22 353-374 76-97 (262)
464 cd01130 VirB11-like_ATPase Typ 92.8 0.24 5.3E-06 49.3 6.5 122 351-484 25-149 (186)
465 TIGR03880 KaiC_arch_3 KaiC dom 92.8 0.54 1.2E-05 47.9 9.1 37 350-386 15-51 (224)
466 cd03247 ABCC_cytochrome_bd The 92.8 0.81 1.8E-05 45.0 10.1 26 351-376 28-53 (178)
467 cd03228 ABCC_MRP_Like The MRP 92.8 0.88 1.9E-05 44.5 10.2 26 351-376 28-53 (171)
468 PRK12422 chromosomal replicati 92.8 1.3 2.8E-05 50.6 12.9 35 354-388 144-178 (445)
469 PRK14489 putative bifunctional 92.8 0.12 2.7E-06 57.2 4.6 36 350-385 204-239 (366)
470 COG4608 AppF ABC-type oligopep 92.7 0.5 1.1E-05 50.2 8.8 27 350-376 38-64 (268)
471 PRK05342 clpX ATP-dependent pr 92.7 0.085 1.8E-06 59.4 3.4 27 352-378 109-135 (412)
472 cd00881 GTP_translation_factor 92.7 0.32 6.8E-06 47.0 6.9 23 354-376 2-24 (189)
473 PF02367 UPF0079: Uncharacteri 92.7 0.12 2.5E-06 48.8 3.7 28 350-377 14-41 (123)
474 cd04162 Arl9_Arfrp2_like Arl9/ 92.7 0.14 3E-06 49.5 4.3 21 354-374 2-22 (164)
475 PRK14729 miaA tRNA delta(2)-is 92.6 0.19 4.1E-06 54.3 5.7 86 351-445 4-104 (300)
476 COG0467 RAD55 RecA-superfamily 92.6 0.27 5.8E-06 51.5 6.7 38 350-387 22-59 (260)
477 cd03230 ABC_DR_subfamily_A Thi 92.6 0.93 2E-05 44.4 10.1 26 351-376 26-51 (173)
478 cd03214 ABC_Iron-Siderophores_ 92.6 0.98 2.1E-05 44.5 10.3 27 350-376 24-50 (180)
479 PRK09165 replicative DNA helic 92.6 0.96 2.1E-05 52.3 11.7 110 349-467 215-349 (497)
480 cd03229 ABC_Class3 This class 92.5 1.2 2.7E-05 43.7 11.0 27 350-376 25-51 (178)
481 cd03213 ABCG_EPDR ABCG transpo 92.5 0.88 1.9E-05 45.5 10.1 26 350-375 34-59 (194)
482 PRK03992 proteasome-activating 92.5 0.092 2E-06 58.6 3.3 28 350-377 164-191 (389)
483 PRK00080 ruvB Holliday junctio 92.5 0.098 2.1E-06 56.8 3.4 27 351-377 51-77 (328)
484 PRK06851 hypothetical protein; 92.5 0.16 3.5E-06 56.3 5.1 36 350-385 29-64 (367)
485 PF04665 Pox_A32: Poxvirus A32 92.5 1.4 3.1E-05 46.2 11.8 30 350-379 12-41 (241)
486 PF03308 ArgK: ArgK protein; 92.5 0.22 4.9E-06 52.6 5.8 38 350-387 28-65 (266)
487 PRK05748 replicative DNA helic 92.4 1.3 2.8E-05 50.4 12.4 110 349-467 201-322 (448)
488 PF00437 T2SE: Type II/IV secr 92.4 0.43 9.3E-06 50.1 8.0 118 350-482 126-244 (270)
489 TIGR01242 26Sp45 26S proteasom 92.4 0.091 2E-06 57.9 3.0 28 350-377 155-182 (364)
490 TIGR00101 ureG urease accessor 92.4 0.12 2.7E-06 52.3 3.7 27 351-377 1-27 (199)
491 PRK10646 ADP-binding protein; 92.4 0.13 2.9E-06 50.2 3.7 28 350-377 27-54 (153)
492 PHA02542 41 41 helicase; Provi 92.3 1.1 2.5E-05 51.4 11.8 40 349-388 188-227 (473)
493 KOG0731 AAA+-type ATPase conta 92.3 0.38 8.2E-06 57.7 8.0 40 350-392 343-382 (774)
494 cd04171 SelB SelB subfamily. 92.3 0.34 7.4E-06 45.6 6.4 22 352-373 1-22 (164)
495 cd03216 ABC_Carb_Monos_I This 92.3 0.74 1.6E-05 44.8 8.9 26 350-375 25-50 (163)
496 COG1703 ArgK Putative periplas 92.2 0.17 3.6E-06 54.5 4.6 50 337-387 38-87 (323)
497 PRK10463 hydrogenase nickel in 92.2 0.14 3E-06 55.1 4.0 36 349-385 102-137 (290)
498 PRK08451 DNA polymerase III su 92.2 1.7 3.7E-05 50.7 13.0 29 348-376 33-61 (535)
499 PRK09112 DNA polymerase III su 92.1 1.3 2.8E-05 49.0 11.6 29 349-377 43-71 (351)
500 cd02858 Esterase_N_term Estera 92.1 0.51 1.1E-05 41.3 6.8 54 32-96 7-61 (85)
No 1
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-61 Score=519.27 Aligned_cols=342 Identities=51% Similarity=0.873 Sum_probs=320.1
Q ss_pred CCCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 005388 347 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM 426 (699)
Q Consensus 347 ~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl 426 (699)
....|.+|+|+|||++|||+++.+|.++|+|.++++..||.++|||.......+..||.++++++...+.+++..++.|+
T Consensus 24 ~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s~~ff~p~n~~~~~lr~~~a~~~l~D~ 103 (438)
T KOG0234|consen 24 FMGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDSEPFFLPDNAEASKLRKQLALLALNDL 103 (438)
T ss_pred ccCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhcccccccccccCChhhhhhhHHHHHHHhhhH
Confidence 35689999999999999999999999999999999999999999998877666678999999999999999999999999
Q ss_pred HHHHh-cCCeEEEEeCCCCCHHHHHHHHHH-H-cCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHH
Q 005388 427 ISWMH-EGGQVGIFDATNSSRKRRNMLMKM-A-EGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 503 (699)
Q Consensus 427 ~~~L~-~~G~vVIlDAtn~~~e~R~~l~el-~-~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~ 503 (699)
..|+. .+|+++|+||||.++++|+.+..+ . +.++++.|||+.|+|++++.+||+.++..+|||+++ +.+.++++|+
T Consensus 104 ~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~-~~e~a~~dfl 182 (438)
T KOG0234|consen 104 LHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGK-DQEEALKDFL 182 (438)
T ss_pred HHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCC-CHHHHHHHHH
Confidence 99998 569999999999999999999999 3 699999999999999999999999888899999999 9999999999
Q ss_pred HHHHhhhhhccCCCCC-----CceEEeecccCCcceeEEeccccCCCcceeeeecccCCCCcceEEecccccccccCCcc
Q 005388 504 NRLANYEKVYEPVDEG-----SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRI 578 (699)
Q Consensus 504 ~Ri~~y~~~yEpl~e~-----~yik~in~~~~~g~~~~~n~i~gyL~~rIvffLmN~~~~~~~I~LVRHGeS~~N~~~~~ 578 (699)
+||..|++.|||+++. +|||+||+ |+++++|+|+|||++++||||||+|.++++|||+|||++++|..++.
T Consensus 183 ~ri~~ye~~YePld~~~d~~lsyik~in~----g~~~~~~~i~~~l~srivy~lmN~~~~pR~i~l~r~geS~~n~~gri 258 (438)
T KOG0234|consen 183 KRIRNYEKYYEPLDRARDKDLSYIKIINV----GEEIVVHNIEGYLQSRIVYYLMNIHTTPRTIYLTRHGESEFNVEGRI 258 (438)
T ss_pred HHHHhhhhccCcCChhhccccceEEEecc----cceEEEecccceehhhhhhhhhccccCCceEEEEecCCCcccccccc
Confidence 9999999999999932 99999999 99999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh-cCCCccccccccccccCcCCCCCHHHHHHhC
Q 005388 579 GGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI-AGFPKIQWRALDEINAGVCDGMTYEEIKKNM 657 (699)
Q Consensus 579 ~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i-~g~~v~~~~~L~E~~~G~~eG~t~~ei~~~~ 657 (699)
+||++|++.|.++|+.+++++.++.. .-..||||++.||+|||+.+ ....+.++..|+|++.|.|+|+++++|.+.|
T Consensus 259 ggds~ls~~g~~ya~~l~~f~~~~~~--~dl~vwts~~~rti~ta~~l~~~~~~~~~~~Ldei~ag~~~g~t~eeI~~~~ 336 (438)
T KOG0234|consen 259 GGDSPLSERGSQYAKSLIKFVEEQSS--SDLDVWTSQRKRTIQTAEGLKLDYSVEQWKALDEIDAGVCEGLTYEEIETNY 336 (438)
T ss_pred CCcccccHHHHHHHHHHHHHHhhhcc--cCceeccchHHHHhhhHhhcCcchhhhhHhhcCcccccccccccHHHHHHhC
Confidence 99999999999999999999987622 22489999999999999966 2233489999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 005388 658 PEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWC 695 (699)
Q Consensus 658 P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~ 695 (699)
|+++.....|+++|+||+||||.|+.+|+++++-+|-.
T Consensus 337 p~e~~~r~~dky~yry~~gESy~D~v~RlePvImElEr 374 (438)
T KOG0234|consen 337 PEEFALRDKDKYRYRYPGGESYSDLVQRLEPVIMELER 374 (438)
T ss_pred chhhhhccCCcceeecCCCCCHHHHHHhhhhHhHhhhh
Confidence 99999999999999999999999999999999988743
No 2
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=100.00 E-value=3e-57 Score=527.56 Aligned_cols=331 Identities=27% Similarity=0.516 Sum_probs=289.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
++++|+|+||||+||||+|++|+++|+|.++++++|+.|+||+...+. ...++.+.+.... ..+++..+++++..|
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~--~~~~~~~~~~~~~--e~~~~~~~~~d~~~~ 289 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERR--GGAVSSPTGAAEV--EFRIAKAIAHDMTTF 289 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccC--CCCcCCCCCHHHH--HHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999966432 2233444444333 355777888889999
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCC----ceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHH
Q 005388 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGN----CKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (699)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~----~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~ 504 (699)
+.+.|.++|+|+||.++.+|..+.+. .+.+ ++++|||+.|++.+.+++|+.+++...|+ +++++.++|++
T Consensus 290 v~~~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~-----~~e~~~~~~~~ 364 (664)
T PTZ00322 290 ICKTDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPG-----APEDFVDRYYE 364 (664)
T ss_pred HhcCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHH
Confidence 99888899999999999999887776 4444 58999999999999999999887766664 58899999999
Q ss_pred HHHhhhhhccCCCC----C-CceEEeecccCCcceeEEeccccCCCcceeeeecccCCCCcceEEecccccccccCCccc
Q 005388 505 RLANYEKVYEPVDE----G-SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIG 579 (699)
Q Consensus 505 Ri~~y~~~yEpl~e----~-~yik~in~~~~~g~~~~~n~i~gyL~~rIvffLmN~~~~~~~I~LVRHGeS~~N~~~~~~ 579 (699)
|++.|++.||+++. + +|||+ +. |++|.+|+|+|||+++|+|||||+|+.+|+|||||||||.+|..++++
T Consensus 365 ~~~~~~~~Ye~~~~~~d~~~~~ik~-~~----g~~~~~~~i~g~l~~~i~~~l~n~~~~~m~i~LiRHGeT~~n~~~r~~ 439 (664)
T PTZ00322 365 VIEQLEAVYKSLNPVTDCDLTYIRI-ED----TQTFSLNNISGWMPSRLAYMLHNLNPTPMNLYLTRAGEYVDLLSGRIG 439 (664)
T ss_pred HHHHHHhhcccCCccccCCCceEEE-ec----CcEEEEeccccccchhhheeeeeeccCCceEEEEecccchhhhcCccC
Confidence 99999999999862 2 89996 55 899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhhc--------------------CCCccccccccc
Q 005388 580 GDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA--------------------GFPKIQWRALDE 639 (699)
Q Consensus 580 GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i~--------------------g~~v~~~~~L~E 639 (699)
||+|||+.|++||++++++|.... ...++.|||||++||+|||++|. +.++..++.|+|
T Consensus 440 Gd~pLt~~G~~qA~~l~~~l~~~~-~~~~~~V~sSpl~Ra~~TA~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~L~E 518 (664)
T PTZ00322 440 GNSRLTERGRAYSRALFEYFQKEI-STTSFTVMSSCAKRCTETVHYFAEESILQQSTASAASSQSPSLNCRVLYFPTLDD 518 (664)
T ss_pred CCCccCHHHHHHHHHHHHHHHhcc-CCCCcEEEcCCcHHHHHHHHHHHhccccccccccccccccccccccccchhhhCc
Confidence 999999999999999999886431 23467999999999999998872 345677899999
Q ss_pred cccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHH-HHHHHHHHHHHH
Q 005388 640 INAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVI-QRFAACPCSIWC 695 (699)
Q Consensus 640 ~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~-~Rv~~~L~~L~~ 695 (699)
++||.|||++++++.+.||+.+..|..+++.+++|+|||+.|+. +|+++++.+|..
T Consensus 519 i~fG~wEG~t~~ei~~~~p~~~~~~~~d~~~~~~P~GES~~d~~~~R~~~~i~~l~~ 575 (664)
T PTZ00322 519 INHGDCEGQLLSDVRRTMPNTLQSMKADPYYTAWPNGECIHQVFNARLEPHIHDIQA 575 (664)
T ss_pred CCCcccCCCCHHHHHHhCcHHHHHHHhCCCcCCCCCCcCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999976 799999999853
No 3
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=100.00 E-value=1.3e-50 Score=411.71 Aligned_cols=207 Identities=57% Similarity=0.979 Sum_probs=170.6
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~ 427 (699)
+..+++|+||||||+|||++|++|++||.|.|+++.+||.|+|||...+...+..||++.++++.+.+.++|..+++||.
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~ 88 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDLI 88 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHh-cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHH
Q 005388 428 SWMH-EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 505 (699)
Q Consensus 428 ~~L~-~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~R 505 (699)
+||. ++|+++|+||||.++++|+.+.+. .+.+++++|||++|+|++++++||+.++..+|||.++ ++++|++||++|
T Consensus 89 ~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~-~~e~A~~Df~~R 167 (222)
T PF01591_consen 89 EWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGM-DPEEAIEDFKKR 167 (222)
T ss_dssp HHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS--HHHHHHHHHHH
T ss_pred HHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccC-CHHHHHHHHHHH
Confidence 9999 679999999999999999999998 7888999999999999999999999999888999999 999999999999
Q ss_pred HHhhhhhccCCCC---C--CceEEeecccCCcceeEEeccccCCCcceeeeecccCCCC
Q 005388 506 LANYEKVYEPVDE---G--SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTP 559 (699)
Q Consensus 506 i~~y~~~yEpl~e---~--~yik~in~~~~~g~~~~~n~i~gyL~~rIvffLmN~~~~~ 559 (699)
|+.|+++|||+++ . +|||+||+ |+++++|+|+|||+++|+|||||+|+++
T Consensus 168 I~~Ye~~YEpl~~e~d~~lsyIKiin~----g~~v~~n~i~GyL~srIv~~LmNlh~~P 222 (222)
T PF01591_consen 168 IEHYEKVYEPLDEEEDEDLSYIKIINV----GEKVIVNNISGYLQSRIVFYLMNLHIKP 222 (222)
T ss_dssp HHHHHTT-----TTTTTTSEEEEEETT----TTEEEEE---SHHHHHHHHHHTT---S-
T ss_pred HHhhcccccccccccccCceEEEEEcC----CceEEEecccCEeHHHHHHHHhhcCCCC
Confidence 9999999999992 2 99999999 9999999999999999999999999874
No 4
>PRK13463 phosphatase PhoE; Provisional
Probab=99.94 E-value=1.4e-26 Score=233.17 Aligned_cols=135 Identities=26% Similarity=0.388 Sum_probs=125.2
Q ss_pred CcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cCCCccc
Q 005388 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQ 633 (699)
Q Consensus 559 ~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g~~v~~ 633 (699)
+++|||||||++.+|..++++| |.|||+.|++||+.+++.|. ..+++.|||||+.||+|||+++ .+.++.+
T Consensus 2 ~~~i~lvRHG~t~~n~~~~~~G~~d~~Lt~~G~~Qa~~~~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 77 (203)
T PRK13463 2 KTTVYVTRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERMK----DLSIHAIYSSPSERTLHTAELIKGERDIPIIA 77 (203)
T ss_pred ceEEEEEeCCCCccchhCcccCCCCCCcCHHHHHHHHHHHHHhc----CCCCCEEEECCcHHHHHHHHHHHhcCCCCceE
Confidence 3789999999999999999988 99999999999999998764 5679999999999999999998 4678899
Q ss_pred cccccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 005388 634 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWCLC 697 (699)
Q Consensus 634 ~~~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~ea 697 (699)
+++|+|+++|.|+|++.+++.+.||+.+..|..++..+.+|+|||+.++..|+..+++++....
T Consensus 78 ~~~l~E~~~G~~eG~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~l~~i~~~~ 141 (203)
T PRK13463 78 DEHFYEINMGIWEGQTIDDIERQYPDDIQLFWNEPHLFQSTSGENFEAVHKRVIEGMQLLLEKH 141 (203)
T ss_pred CcCceeCCCCccCCCcHHHHhhhCHHHHHHHHhChhccCCCCCeEHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999988999999999999999999999987653
No 5
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=99.94 E-value=2.3e-26 Score=235.85 Aligned_cols=135 Identities=23% Similarity=0.263 Sum_probs=118.0
Q ss_pred CcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhhc---C---CC
Q 005388 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA---G---FP 630 (699)
Q Consensus 559 ~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i~---g---~~ 630 (699)
|++|||||||+|.+|..++++| |.|||+.|++||+++++.|... ..+++.|||||+.||+|||++|. + .+
T Consensus 1 m~~l~LVRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpL~Ra~qTA~~i~~~~~~~~~~ 78 (228)
T PRK14116 1 MAKLVLIRHGQSEWNLSNQFTGWVDVDLSEKGVEEAKKAGRLIKEA--GLEFDQAYTSVLTRAIKTLHYALEESDQLWIP 78 (228)
T ss_pred CCEEEEEeCCCCCCccccCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCcCCCC
Confidence 4789999999999999999999 9999999999999999988642 35799999999999999999982 2 56
Q ss_pred ccccccccccccCcCCCCCHHHHHHhCHHH-HHHHHhCC------------------------CCCCCCCCCCHHHHHHH
Q 005388 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQR 685 (699)
Q Consensus 631 v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-~~~~~~d~------------------------~~~~~PgGES~~dv~~R 685 (699)
+.++++|+|++||.|||++++++.+++|+. +..|..+. ..+++|+|||+.++.+|
T Consensus 79 ~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgGEs~~~~~~R 158 (228)
T PRK14116 79 ETKTWRLNERHYGALQGLNKKETAEKYGDEQVHIWRRSYDVLPPLLDADDEGSAAKDRRYANLDPRIIPGGENLKVTLER 158 (228)
T ss_pred cccCcccccccchhhcCCCHHHHHHHhhhhHHHHHhhcccccCcccccccccccccchhhhccCccCCCCCCCHHHHHHH
Confidence 778899999999999999999999999986 66676531 13468999999999999
Q ss_pred HHHHHHHHHH
Q 005388 686 FAACPCSIWC 695 (699)
Q Consensus 686 v~~~L~~L~~ 695 (699)
+..+|++++.
T Consensus 159 v~~~l~~~i~ 168 (228)
T PRK14116 159 VIPFWEDHIA 168 (228)
T ss_pred HHHHHHHHHH
Confidence 9999999764
No 6
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=99.94 E-value=3.3e-26 Score=229.43 Aligned_cols=134 Identities=23% Similarity=0.246 Sum_probs=123.9
Q ss_pred cceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cCCCcccc
Q 005388 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQW 634 (699)
Q Consensus 560 ~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g~~v~~~ 634 (699)
|+|||||||+|.+|..++++| |.|||+.|++||+++++.|. ..+++.|||||+.||+|||+++ .+.++.++
T Consensus 1 ~~i~lvRHG~t~~n~~~~~~G~~d~pLt~~G~~Qa~~~~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 76 (199)
T PRK15004 1 MRLWLVRHGETQANVDGLYSGHAPTPLTARGIEQAQNLHTLLR----DVPFDLVLCSELERAQHTARLVLSDRQLPVHII 76 (199)
T ss_pred CeEEEEeCCCCccccCCcEeCCCCCCcCHHHHHHHHHHHHHHh----CCCCCEEEECchHHHHHHHHHHHhcCCCCceeC
Confidence 579999999999999999988 99999999999999998774 5678999999999999999999 56788899
Q ss_pred ccccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 005388 635 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWCLC 697 (699)
Q Consensus 635 ~~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~ea 697 (699)
++|+|+++|.|+|++.+++...+|+.+..|..++..+.+|+|||+.|+..|+..++++|....
T Consensus 77 ~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~Rv~~~l~~l~~~~ 139 (199)
T PRK15004 77 PELNEMFFGDWEMRHHRDLMQEDAENYAAWCNDWQHAIPTNGEGFQAFSQRVERFIARLSAFQ 139 (199)
T ss_pred hhheeCCCcccCCCCHHHHHHHCHHHHHHHHhChhhcCCCCCcCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999988877888999999999999999999997643
No 7
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=99.94 E-value=4.7e-26 Score=233.49 Aligned_cols=136 Identities=24% Similarity=0.247 Sum_probs=117.9
Q ss_pred CcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhhc------CCC
Q 005388 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GFP 630 (699)
Q Consensus 559 ~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i~------g~~ 630 (699)
|++|||||||||.+|..++++| |.|||+.|++||++++++|... ..+++.||||||+||+|||++|. +.+
T Consensus 1 m~~l~LvRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpL~Ra~~TA~~i~~~~~~~~~~ 78 (228)
T PRK14119 1 MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVREN--NIAIDVAFTSLLTRALDTTHYILTESKQQWIP 78 (228)
T ss_pred CCEEEEEeCCCCCcccCCCccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEeCccHHHHHHHHHHHHhcccCCCC
Confidence 4689999999999999999999 9999999999999999988643 45789999999999999999982 257
Q ss_pred ccccccccccccCcCCCCCHHHHHHhCHHH-HHHHHhCCC------------------------CCCCCCCCCHHHHHHH
Q 005388 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQR 685 (699)
Q Consensus 631 v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-~~~~~~d~~------------------------~~~~PgGES~~dv~~R 685 (699)
+.++++|+|+++|.|||++++++.++||+. +..|..+.. ...+|+|||+.++..|
T Consensus 79 ~~~~~~LrE~~fG~weG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~R 158 (228)
T PRK14119 79 VYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVR 158 (228)
T ss_pred eeECCCccccccccccCCcHHHHHHHccHHHHHHHHcccccCCCcccccccccccccccccccccccCCCCCCHHHHHHH
Confidence 788999999999999999999999999986 556664421 1236899999999999
Q ss_pred HHHHHHHHHHH
Q 005388 686 FAACPCSIWCL 696 (699)
Q Consensus 686 v~~~L~~L~~e 696 (699)
+.++|++++..
T Consensus 159 v~~~l~~~~~~ 169 (228)
T PRK14119 159 VIPFWTDHISQ 169 (228)
T ss_pred HHHHHHHHHHh
Confidence 99999998654
No 8
>PRK01295 phosphoglyceromutase; Provisional
Probab=99.93 E-value=9.4e-26 Score=228.02 Aligned_cols=135 Identities=26% Similarity=0.285 Sum_probs=119.3
Q ss_pred CcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cC---CC
Q 005388 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (699)
Q Consensus 559 ~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g---~~ 630 (699)
+++|||||||+|.+|..++++| |.|||+.|++||+.++++|... ..+++.|||||+.||+|||++| .+ .+
T Consensus 2 ~~~i~LVRHGet~~n~~~~~~G~~d~~Lt~~G~~qA~~~~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 79 (206)
T PRK01295 2 SRTLVLVRHGQSEWNLKNLFTGWRDPDLTEQGVAEAKAAGRKLKAA--GLKFDIAFTSALSRAQHTCQLILEELGQPGLE 79 (206)
T ss_pred CceEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEeCCcHHHHHHHHHHHHHcCCCCCC
Confidence 4689999999999999999988 9999999999999999988653 4579999999999999999998 33 67
Q ss_pred ccccccccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHH-HHHHH
Q 005388 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACP-CSIWC 695 (699)
Q Consensus 631 v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L-~~L~~ 695 (699)
+.+++.|+|+++|.|+|++.+++++.+|+.+..|+.+++.+++|+|||+.|+.+|+..++ +.+..
T Consensus 80 ~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~ 145 (206)
T PRK01295 80 TIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVLPYYLQEILP 145 (206)
T ss_pred eEECCcccccccccccCCcHHHHHHHchHHHHHHhhcccCCCCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999987666556666789999999999999999974 56654
No 9
>PRK01112 phosphoglyceromutase; Provisional
Probab=99.93 E-value=9.7e-26 Score=231.43 Aligned_cols=133 Identities=28% Similarity=0.232 Sum_probs=119.5
Q ss_pred CcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhhc---------
Q 005388 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA--------- 627 (699)
Q Consensus 559 ~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i~--------- 627 (699)
|++||||||||+.+|..++++| |.+||+.|++||++++++|. ..+++.|||||+.||+|||+.|.
T Consensus 1 M~~L~LvRHGqt~~n~~~~~~G~~D~~Lte~G~~Qa~~l~~~L~----~~~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~ 76 (228)
T PRK01112 1 MALLILLRHGQSVWNAKNLFTGWVDIPLSQQGIAEAIAAGEKIK----DLPIDCIFTSTLVRSLMTALLAMTNHSSGKIP 76 (228)
T ss_pred CcEEEEEeCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHhh----cCCCCEEEEcCcHHHHHHHHHHHHhhcccccc
Confidence 4789999999999999999999 99999999999999998875 35899999999999999999873
Q ss_pred -----------------------CCCccccccccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHH
Q 005388 628 -----------------------GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQ 684 (699)
Q Consensus 628 -----------------------g~~v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~ 684 (699)
.+++..++.|+|+++|.|+|++++++.++||+.+..|+.+++.+++|+|||+.|+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~GES~~d~~~ 156 (228)
T PRK01112 77 YIVHEEDDKKWMSRIYSDEEPEQMIPLFQSSALNERMYGELQGKNKAETAEKFGEEQVKLWRRSYKTAPPQGESLEDTGQ 156 (228)
T ss_pred cccccccccccccccccccccccCCCeeecCccccccccccCCCCHHHHHHHCcHHHHHHHhCcCCCCCCCCCCHHHHHH
Confidence 135667899999999999999999999999988777667777889999999999999
Q ss_pred HHHHHHHHHHH
Q 005388 685 RFAACPCSIWC 695 (699)
Q Consensus 685 Rv~~~L~~L~~ 695 (699)
|+.++|++++.
T Consensus 157 Rv~~~l~~~~~ 167 (228)
T PRK01112 157 RTLPYFQNRIL 167 (228)
T ss_pred HHHHHHHHHHH
Confidence 99999998653
No 10
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=99.93 E-value=1.2e-25 Score=230.86 Aligned_cols=134 Identities=21% Similarity=0.178 Sum_probs=117.4
Q ss_pred CcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhhc------CCC
Q 005388 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GFP 630 (699)
Q Consensus 559 ~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i~------g~~ 630 (699)
|++|||||||+|.+|..++++| |.|||+.|++||++++++|... ..+++.|||||++||+|||+++. +.+
T Consensus 1 m~~l~LvRHG~t~~n~~~~~qG~~D~~Lt~~G~~qa~~~~~~l~~~--~~~~~~i~sSpl~Ra~~TA~~i~~~~~~~~~~ 78 (230)
T PRK14117 1 MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEA--GIEFDLAFTSVLKRAIKTTNLALEASDQLWVP 78 (230)
T ss_pred CCEEEEEeCccccCcccCCcCCCCCCCcCHHHHHHHHHHHHHHHHc--CCCCCEEEECCcHHHHHHHHHHHHhcccCCCC
Confidence 4789999999999999999999 9999999999999999988642 35789999999999999999872 367
Q ss_pred ccccccccccccCcCCCCCHHHHHHhCHHH-HHHHHhC------------------------CCCCCCCCCCCHHHHHHH
Q 005388 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKD------------------------KLRYRYPRGESYLDVIQR 685 (699)
Q Consensus 631 v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-~~~~~~d------------------------~~~~~~PgGES~~dv~~R 685 (699)
+.++++|+|+++|.|||++++++.++||+. +..|..+ ...+++|+|||+.++.+|
T Consensus 79 ~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~R 158 (230)
T PRK14117 79 VEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPAMAKDDEYSAHTDRRYASLDDSVIPDAENLKVTLER 158 (230)
T ss_pred ceeCCccccccchhhcCCCHHHHHHHccHHHHHHHhcccccCCCcccccccccccccccccccccCCCCCCCCHHHHHHH
Confidence 888999999999999999999999999986 4566543 123467999999999999
Q ss_pred HHHHHHHHH
Q 005388 686 FAACPCSIW 694 (699)
Q Consensus 686 v~~~L~~L~ 694 (699)
+.++|++++
T Consensus 159 v~~~l~~~~ 167 (230)
T PRK14117 159 ALPFWEDKI 167 (230)
T ss_pred HHHHHHHHH
Confidence 999999976
No 11
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=99.93 E-value=2.5e-25 Score=228.08 Aligned_cols=134 Identities=19% Similarity=0.205 Sum_probs=116.3
Q ss_pred cceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhhc------CCCc
Q 005388 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GFPK 631 (699)
Q Consensus 560 ~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i~------g~~v 631 (699)
|+|||||||+|.+|..++++| |.|||+.|++||+.+++.|.+. ..+++.|||||+.||+|||++|. +.++
T Consensus 1 m~l~LvRHG~t~~n~~~~~~G~~d~~Lt~~G~~qa~~~~~~l~~~--~~~~d~i~sSpl~Ra~~TA~~i~~~~~~~~~~~ 78 (227)
T PRK14118 1 MELVFIRHGFSEWNAKNLFTGWRDVNLTERGVEEAKAAGKKLKEA--GYEFDIAFTSVLTRAIKTCNIVLEESNQLWIPQ 78 (227)
T ss_pred CEEEEEecCCCccccccCcCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEEeChHHHHHHHHHHHHhcCCCCCCe
Confidence 579999999999999999999 9999999999999999988652 35789999999999999999982 2567
Q ss_pred cccccccccccCcCCCCCHHHHHHhCHHH-HHHHHhCCC------------------------CCCCCCCCCHHHHHHHH
Q 005388 632 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQRF 686 (699)
Q Consensus 632 ~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-~~~~~~d~~------------------------~~~~PgGES~~dv~~Rv 686 (699)
.++++|+|+++|.|||++++++.+.+|+. +..|..+.. .+.+|+|||+.++.+|+
T Consensus 79 ~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~Rv 158 (227)
T PRK14118 79 VKNWRLNERHYGALQGLDKKATAEQYGDEQVHIWRRSYDTLPPDLDPQDPNSAHNDRRYAHLPADVVPDAENLKVTLERV 158 (227)
T ss_pred ecCCccccccCccccCCcHHHHHHHhhHHHHHHHHhccccCCCccccccccccccchhhccCcCCCCCCCCCHHHHHHHH
Confidence 78899999999999999999999999976 555654311 24579999999999999
Q ss_pred HHHHHHHHH
Q 005388 687 AACPCSIWC 695 (699)
Q Consensus 687 ~~~L~~L~~ 695 (699)
.++|++++.
T Consensus 159 ~~~l~~~~~ 167 (227)
T PRK14118 159 LPFWEDQIA 167 (227)
T ss_pred HHHHHHHHh
Confidence 999999765
No 12
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=99.93 E-value=3.7e-25 Score=222.45 Aligned_cols=138 Identities=33% Similarity=0.437 Sum_probs=129.2
Q ss_pred CcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cCCCccc
Q 005388 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQ 633 (699)
Q Consensus 559 ~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g~~v~~ 633 (699)
+++|||||||||.+|..++++| |.|||+.|++||+.+++.|... ...++.|||||+.||+|||+++ .+.++..
T Consensus 2 ~~~i~lvRHGqt~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~~--~~~~~~i~sS~l~Ra~~TA~~~a~~~~~~~~~ 79 (208)
T COG0406 2 MMRLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAEALAERLAAR--DIGFDAIYSSPLKRAQQTAEPLAEELGLPLEV 79 (208)
T ss_pred ceEEEEEecCCccccccccccCCCCCCCCHHHHHHHHHHHHHHhhc--CCCCCEEEECchHHHHHHHHHHHHhcCCCcee
Confidence 5789999999999999999998 9999999999999999988654 5689999999999999999999 5677889
Q ss_pred cccccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 005388 634 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWCLCQ 698 (699)
Q Consensus 634 ~~~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~ea~ 698 (699)
++.|+|+++|.|+|++.+++.+.+|..+..|..+++.+.+|+|||+.++..|+.++++++..+..
T Consensus 80 ~~~l~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~~~~~~~ 144 (208)
T COG0406 80 DDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLAPPPGGESLADVSKRVVAALAELLRSPP 144 (208)
T ss_pred cCCeeEeecccccCCcHHHHHHhCHHHHHHHhcCccccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999987654
No 13
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=99.92 E-value=7.1e-25 Score=214.61 Aligned_cols=130 Identities=28% Similarity=0.370 Sum_probs=119.6
Q ss_pred eEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cCCCcccccc
Q 005388 562 ILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWRA 636 (699)
Q Consensus 562 I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g~~v~~~~~ 636 (699)
||||||||+.+|..+++ | |.|||+.|++||+.+++.|. ..+++.|||||+.||+|||+++ .+.++.+++.
T Consensus 1 i~lvRHg~t~~n~~~~~-g~~d~~Lt~~G~~qa~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~ 75 (177)
T TIGR03162 1 LYLIRHGETDVNAGLCY-GQTDVPLAEKGAEQAAALREKLA----DVPFDAVYSSPLSRCRELAEILAERRGLPIIKDPR 75 (177)
T ss_pred CEEEeCCCCccCCCcee-CCCCCCcChhHHHHHHHHHHHhc----CCCCCEEEECchHHHHHHHHHHHhhcCCCceECCc
Confidence 68999999999998888 6 99999999999999998764 5689999999999999999999 4678899999
Q ss_pred ccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 005388 637 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWCLC 697 (699)
Q Consensus 637 L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~ea 697 (699)
|+|+++|.|+|++.+++.+.|| .+..|..++..+.+|+|||+.++..|+..++++|....
T Consensus 76 L~E~~~G~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~l~~~~ 135 (177)
T TIGR03162 76 LREMDFGDWEGRSWDEIPEAYP-ELDAWAADWQHARPPGGESFADFYQRVSEFLEELLKAH 135 (177)
T ss_pred cccccCCccCCCCHHHHHHhCH-HHHHHHhCcccCCCcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998 68889888888899999999999999999999998653
No 14
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=99.92 E-value=8.4e-25 Score=227.28 Aligned_cols=135 Identities=27% Similarity=0.294 Sum_probs=117.4
Q ss_pred CCCcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhhc------C
Q 005388 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------G 628 (699)
Q Consensus 557 ~~~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i~------g 628 (699)
|+|++|||||||||.+|..++++| |.|||+.|++||+.+++.|... ...++.|||||+.||+|||++|. .
T Consensus 2 ~~m~~i~LVRHGqt~~n~~~~~~G~~D~pLTe~G~~QA~~~a~~l~~~--~~~~~~IysSpl~Ra~qTA~~i~~~~~~~~ 79 (249)
T PRK14120 2 MMTYTLVLLRHGESEWNAKNLFTGWVDVDLTEKGEAEAKRGGELLAEA--GVLPDVVYTSLLRRAIRTANLALDAADRLW 79 (249)
T ss_pred CCCcEEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEecChHHHHHHHHHHHHhcccCC
Confidence 356889999999999999999988 9999999999999999988642 34689999999999999999982 3
Q ss_pred CCccccccccccccCcCCCCCHHHHHHhCHH-HHHHHHhCCCCC----------------------CCCCCCCHHHHHHH
Q 005388 629 FPKIQWRALDEINAGVCDGMTYEEIKKNMPE-EYEARKKDKLRY----------------------RYPRGESYLDVIQR 685 (699)
Q Consensus 629 ~~v~~~~~L~E~~~G~~eG~t~~ei~~~~P~-~~~~~~~d~~~~----------------------~~PgGES~~dv~~R 685 (699)
.++.++++|+|+++|.|||++..++.++||+ .+..|..+.... .+|+|||+.++.+|
T Consensus 80 ~~i~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~GES~~~~~~R 159 (249)
T PRK14120 80 IPVRRSWRLNERHYGALQGKDKAETKAEYGEEQFMLWRRSYDTPPPPIEDGSEYSQDNDPRYADLGVGPRTECLKDVVAR 159 (249)
T ss_pred CCeEECCCcccccccccCCCCHHHHHHHccHHHHHHHHhccccCCCccccccccccccCccccccCCCCCCCCHHHHHHH
Confidence 5778889999999999999999999999997 477887653222 14899999999999
Q ss_pred HHHHHHHH
Q 005388 686 FAACPCSI 693 (699)
Q Consensus 686 v~~~L~~L 693 (699)
+..+|+++
T Consensus 160 v~~~l~~~ 167 (249)
T PRK14120 160 FLPYWEDD 167 (249)
T ss_pred HHHHHHHH
Confidence 99999985
No 15
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=99.92 E-value=1.7e-24 Score=224.55 Aligned_cols=135 Identities=27% Similarity=0.288 Sum_probs=116.2
Q ss_pred cceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cC---CCc
Q 005388 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPK 631 (699)
Q Consensus 560 ~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g---~~v 631 (699)
|+|||||||||.+|..++++| |.+||+.|++||+.++++|... ..+++.|||||++||+|||++| .+ .++
T Consensus 1 ~~l~lVRHGqt~~n~~~~~~G~~D~~Lt~~G~~QA~~la~~L~~~--~~~~d~iysSpl~Ra~qTA~ii~~~~~~~~~~i 78 (245)
T TIGR01258 1 MKLVLVRHGESEWNALNLFTGWVDVKLSEKGQQEAKRAGELLKEE--GYEFDVAYTSLLKRAIHTLNIALDELDQLWIPV 78 (245)
T ss_pred CEEEEEeCCCcCccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEEcChHHHHHHHHHHHHhcCCCCCCe
Confidence 579999999999999999998 9999999999999999988643 4578999999999999999999 23 567
Q ss_pred cccccccccccCcCCCCCHHHHHHhCHHH-HHHHHhCCC------------------CC------CCCCCCCHHHHHHHH
Q 005388 632 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------RY------RYPRGESYLDVIQRF 686 (699)
Q Consensus 632 ~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-~~~~~~d~~------------------~~------~~PgGES~~dv~~Rv 686 (699)
..++.|+|+++|.|+|++++++.+.||+. +..|..+.. .| .+|+|||+.++..|+
T Consensus 79 ~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~d~~y~~~~~~~~p~GES~~~~~~Rv 158 (245)
T TIGR01258 79 KKSWRLNERHYGALQGLNKAETAAKYGEEQVNIWRRSFDVPPPPIDESDPRSPHNDPRYAHLDPKVLPLTESLKDTIARV 158 (245)
T ss_pred eeCcccccccCCCCcCCCHHHHHHHhhHHHHHHHHhhccCCCCcCCcccccccccChhhhcCCcccCCCCCCHHHHHHHH
Confidence 77899999999999999999999999976 556654311 12 378999999999999
Q ss_pred HHHHHHHHHH
Q 005388 687 AACPCSIWCL 696 (699)
Q Consensus 687 ~~~L~~L~~e 696 (699)
..+|++++..
T Consensus 159 ~~~l~~l~~~ 168 (245)
T TIGR01258 159 LPYWNDEIAP 168 (245)
T ss_pred HHHHHHHHhh
Confidence 9999998643
No 16
>PRK13462 acid phosphatase; Provisional
Probab=99.92 E-value=2.1e-24 Score=217.79 Aligned_cols=130 Identities=23% Similarity=0.272 Sum_probs=112.7
Q ss_pred CCCcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCC--EEEEcChHHHHHHHhhhcCCCc-
Q 005388 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAA--SIWTSTLQRTILTASPIAGFPK- 631 (699)
Q Consensus 557 ~~~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~--~V~sSpL~RA~QTA~~i~g~~v- 631 (699)
..+++|||||||||.+|..++++| |.|||+.|++||+++++.|.. .+++ .|||||+.||+|||+.+ +.++
T Consensus 3 ~~~~~i~LvRHG~t~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~----~~~~~~~i~sSpl~Ra~qTA~~i-~~~~~ 77 (203)
T PRK13462 3 VRNHRLLLLRHGETEWSKSGRHTGRTELELTETGRTQAELAGQALGE----LELDDPLVISSPRRRALDTAKLA-GLTVD 77 (203)
T ss_pred ccccEEEEEeCCCCCcccCCCccCCCCCCCCHHHHHHHHHHHHHHHh----CCCCCCEEEECchHHHHHHHHHh-cCccc
Confidence 356899999999999999999988 899999999999999988754 3455 79999999999999988 5554
Q ss_pred cccccccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 005388 632 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWCLC 697 (699)
Q Consensus 632 ~~~~~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~ea 697 (699)
..+++|+|+++|.|+|++..++.+.||+ +..|. ..+|+|||+.++..|+..+++++....
T Consensus 78 ~~~~~LrE~~~G~~eG~~~~ei~~~~~~-~~~~~-----~~~p~gES~~~~~~Rv~~~l~~i~~~~ 137 (203)
T PRK13462 78 EVSGLLAEWDYGSYEGLTTPQIRESEPD-WLVWT-----HGCPGGESVAQVNERADRAVALALEHM 137 (203)
T ss_pred ccCccccccCCccccCCcHHHHHHhCch-HHhhc-----CCCCCCccHHHHHHHHHHHHHHHHHhC
Confidence 6789999999999999999999999987 43443 345899999999999999999987653
No 17
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=99.92 E-value=1.8e-24 Score=217.55 Aligned_cols=130 Identities=28% Similarity=0.332 Sum_probs=117.3
Q ss_pred ceEEecccccccccCCcccC---CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cCCCcccc
Q 005388 561 PILLTRHGESRDNVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQW 634 (699)
Q Consensus 561 ~I~LVRHGeS~~N~~~~~~G---D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g~~v~~~ 634 (699)
+||||||||+.+|..++++| |.|||+.|++||+.++++|. ..+++.|||||+.||+|||++| .+.++.++
T Consensus 1 ~i~lvRHG~t~~n~~~~~~g~~~d~~Lt~~G~~qa~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 76 (204)
T TIGR03848 1 TVILVRHGRSTANTAGTLAGRTPGVDLDERGREQAAALAERLA----DLPIAAIVSSPLERCRETAEPIAEARGLPPRVD 76 (204)
T ss_pred CEEEEeCCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHHh----cCCCCEEEeCcHHHHHHHHHHHHHhcCCCceEC
Confidence 48999999999999998888 48999999999999998775 4589999999999999999998 57789999
Q ss_pred ccccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005388 635 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWCL 696 (699)
Q Consensus 635 ~~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~e 696 (699)
++|+|+++|.|+|++++++.+. ..|..|..++..+.+|+|||+.++..|+..+++++.+.
T Consensus 77 ~~L~E~~~G~~eG~~~~e~~~~--~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~~~~~ 136 (204)
T TIGR03848 77 ERLGECDYGDWTGRELKELAKE--PLWPVVQAHPSAAVFPGGESLAQVQARAVAAVREHDAR 136 (204)
T ss_pred cccccCCCCeeCCcCHHHHhCc--HHHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999754 35777888888889999999999999999999998754
No 18
>PRK03482 phosphoglycerate mutase; Provisional
Probab=99.92 E-value=1.8e-24 Score=219.15 Aligned_cols=134 Identities=29% Similarity=0.290 Sum_probs=114.9
Q ss_pred CcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cCCCccc
Q 005388 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQ 633 (699)
Q Consensus 559 ~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g~~v~~ 633 (699)
|++|||||||++.+|..++++| |.+||+.|++||+.++++|. ..+++.|||||+.||+|||++| .+.++.+
T Consensus 1 m~~i~lvRHG~t~~n~~~~~~g~~d~~Lt~~G~~qA~~~~~~l~----~~~~~~I~sSpl~Ra~qTA~~i~~~~~~~~~~ 76 (215)
T PRK03482 1 MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVAERAK----ELGITHIISSDLGRTRRTAEIIAQACGCDIIF 76 (215)
T ss_pred CcEEEEEeCCCcccccccccCCCCCCCcCHHHHHHHHHHHHHHh----cCCCCEEEECCcHHHHHHHHHHHHhcCCCeeE
Confidence 4789999999999999888887 99999999999999998874 4578999999999999999998 5778889
Q ss_pred cccccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005388 634 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWCL 696 (699)
Q Consensus 634 ~~~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~e 696 (699)
+++|+|+++|.|+|++++++...++.....+...+..+.+|+|||+.++..|+..+|+++...
T Consensus 77 ~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~Rv~~~l~~~~~~ 139 (215)
T PRK03482 77 DPRLRELNMGVLEKRHIDSLTEEEEGWRRQLVNGTVDGRIPEGESMQELSDRMHAALESCLEL 139 (215)
T ss_pred ChhccccCCccccCCcHHHHHhhHHHHHHhhhcCCCccCCCCCccHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987654322222333455678899999999999999999998754
No 19
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=99.91 E-value=2.5e-24 Score=223.56 Aligned_cols=134 Identities=25% Similarity=0.276 Sum_probs=116.2
Q ss_pred cceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cC---CCc
Q 005388 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPK 631 (699)
Q Consensus 560 ~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g---~~v 631 (699)
|+|||||||||.+|..++++| |.|||+.|++||+.++++|... ..+++.|||||++||+|||++| .+ .++
T Consensus 1 ~~i~LVRHGqt~~n~~~~~~G~~D~pLte~G~~QA~~la~~L~~~--~~~~d~IysSpl~Ra~qTA~~i~~~~~~~~~~~ 78 (247)
T PRK14115 1 TKLVLIRHGESQWNKENRFTGWTDVDLSEKGVSEAKAAGKLLKEE--GYTFDVAYTSVLKRAIRTLWIVLDELDQMWLPV 78 (247)
T ss_pred CEEEEEECCCcccccccCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEEcCCHHHHHHHHHHHHHcCCCCCCc
Confidence 579999999999999999998 9999999999999999988643 4578999999999999999998 33 367
Q ss_pred cccccccccccCcCCCCCHHHHHHhCHHH-HHHHHhCCC------------------------CCCCCCCCCHHHHHHHH
Q 005388 632 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQRF 686 (699)
Q Consensus 632 ~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-~~~~~~d~~------------------------~~~~PgGES~~dv~~Rv 686 (699)
..++.|+|+++|.|+|++++++.+++|+. +..|..+.. .+.+|+|||+.++..|+
T Consensus 79 ~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv 158 (247)
T PRK14115 79 EKSWRLNERHYGALQGLNKAETAAKYGDEQVKIWRRSYDVPPPALEKDDERYPGHDPRYAKLPEEELPLTESLKDTIARV 158 (247)
T ss_pred eECccccccccccccCCCHHHHHHHhhHHHHHHHhcccccCCCcccccccccccccchhhcccCCCCCCCCcHHHHHHHH
Confidence 88999999999999999999999999976 556654211 23579999999999999
Q ss_pred HHHHHHHHH
Q 005388 687 AACPCSIWC 695 (699)
Q Consensus 687 ~~~L~~L~~ 695 (699)
..+|++++.
T Consensus 159 ~~~l~~~i~ 167 (247)
T PRK14115 159 LPYWNETIA 167 (247)
T ss_pred HHHHHHHHH
Confidence 999998764
No 20
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=99.90 E-value=2.5e-23 Score=199.68 Aligned_cols=130 Identities=28% Similarity=0.350 Sum_probs=112.8
Q ss_pred ceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cCCCccccc
Q 005388 561 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWR 635 (699)
Q Consensus 561 ~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g~~v~~~~ 635 (699)
+|||||||++.+|..+.+.| |.|||+.|++||+.++++|...+ ...++.|||||+.||+|||+++ .+.+ .+.+
T Consensus 1 ~i~lvRHG~s~~n~~~~~~g~~d~~Lt~~G~~qa~~~a~~l~~~~-~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~-~~~~ 78 (155)
T smart00855 1 RLYLIRHGETEANREGRLTGWTDSPLTELGRAQAEALGELLASLG-RLRFDVIYSSPLLRARETAEALAIALGLG-EVDP 78 (155)
T ss_pred CEEEEeCCCCcccccCeEcCCCCCCCCHHHHHHHHHHHHHHHhcc-CCCCCEEEeCchHHHHHHHHHHHHhcCCC-CCCh
Confidence 58999999999998777665 99999999999999999886431 3588999999999999999998 3444 4889
Q ss_pred cccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005388 636 ALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWCL 696 (699)
Q Consensus 636 ~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~e 696 (699)
.|+|+++|.|+|++++++.+.+|+.+..| +.+.+|+|||+.++..|+..+++++...
T Consensus 79 ~L~E~~~G~~~g~~~~~~~~~~~~~~~~~----~~~~~~~gEs~~~~~~Rv~~~~~~i~~~ 135 (155)
T smart00855 79 RLRERDYGAWEGLTKEEERAKAWTRPADW----LGAAPPGGESLADVVERLVRALEELIAT 135 (155)
T ss_pred hhhhcccceecCCcHHHHHHHHHHHHhcc----CCCCCcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998888765444 5778899999999999999999999764
No 21
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.90 E-value=3.5e-23 Score=226.59 Aligned_cols=136 Identities=28% Similarity=0.342 Sum_probs=123.5
Q ss_pred CCCcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cCCCc
Q 005388 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPK 631 (699)
Q Consensus 557 ~~~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g~~v 631 (699)
.++++|||||||++.+|..++++| |.+||+.|++||+.+++.|... .+++.|||||+.||+|||+.+ ++.++
T Consensus 169 ~~~~~i~LvRHGet~~n~~~~~~g~~D~~Lt~~G~~QA~~l~~~l~~~---~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~ 245 (372)
T PRK07238 169 GTPTRLLLLRHGQTELSVQRRYSGRGNPELTEVGRRQAAAAARYLAAR---GGIDAVVSSPLQRARDTAAAAAKALGLDV 245 (372)
T ss_pred CCceEEEEEeCCCCCcccCCeeeCCCCCCcCHHHHHHHHHHHHHHhcc---CCCCEEEECChHHHHHHHHHHHHhcCCCc
Confidence 356899999999999999988887 9999999999999999887532 178999999999999999998 56788
Q ss_pred cccccccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005388 632 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWCL 696 (699)
Q Consensus 632 ~~~~~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~e 696 (699)
.+++.|+|+++|.|+|++++++.+.||+.+..|..++ .+.+|+|||+.++..|+..++++|...
T Consensus 246 ~~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~w~~~~-~~~~p~gEs~~~~~~Rv~~~l~~l~~~ 309 (372)
T PRK07238 246 TVDDDLIETDFGAWEGLTFAEAAERDPELHRAWLADT-SVAPPGGESFDAVARRVRRARDRLIAE 309 (372)
T ss_pred EECccceeCCCCccCCCCHHHHHHHCHHHHHHHHhCC-CCCCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998876 578899999999999999999998764
No 22
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=99.90 E-value=9.1e-24 Score=200.52 Aligned_cols=133 Identities=36% Similarity=0.532 Sum_probs=121.8
Q ss_pred ceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cCCCccccc
Q 005388 561 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWR 635 (699)
Q Consensus 561 ~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g~~v~~~~ 635 (699)
+|||||||++.+|..++.++ |.|||+.|+.||+.+++.|.+. ..+++.|||||+.||+|||+.+ ++.++.+++
T Consensus 1 ~i~liRHg~~~~n~~~~~~~~~d~~Lt~~G~~qA~~~~~~l~~~--~~~~~~i~~Sp~~R~~qTA~~~~~~~~~~~~~~~ 78 (158)
T PF00300_consen 1 RIYLIRHGESEFNAEGRVQGDSDPPLTERGREQARQLGEYLAER--DIQIDVIYSSPLRRCIQTAEIIAEGLGIEIIVDP 78 (158)
T ss_dssp EEEEEE-S-BHHHHTTBCGTTSSTGBEHHHHHHHHHHHHHHHHT--TSSCSEEEEESSHHHHHHHHHHHHHHTSEEEEEG
T ss_pred CEEEEECCccccccCCCcCCCCCccccHHHHHHHHhhccccccc--ccCceEEecCCcchhhhhhchhhccccccccccc
Confidence 58999999999998888887 6689999999999999988754 6789999999999999999999 468899999
Q ss_pred cccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 005388 636 ALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWC 695 (699)
Q Consensus 636 ~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~ 695 (699)
.|+|+++|.|+|++..++.+.+|..+..|..++..+.+|+|||+.++..|+..+++.|..
T Consensus 79 ~l~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~~~~l~~ 138 (158)
T PF00300_consen 79 RLREIDFGDWEGRPFDEIEEKFPDEFEAWWSDPYFYRPPGGESWEDFQQRVKQFLDELIA 138 (158)
T ss_dssp GGSCCGCGGGTTSBHHHHHHHHHHHHHHHHHHTSSCGSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhcccchhhHHhhhhcccchhhccccccccccCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998999999988899999999999999999999999984
No 23
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=1.4e-21 Score=197.14 Aligned_cols=137 Identities=28% Similarity=0.298 Sum_probs=121.3
Q ss_pred CCcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cC---C
Q 005388 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---F 629 (699)
Q Consensus 558 ~~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g---~ 629 (699)
...+++|||||||+||.+++++| |.+||+.|.+||++++++|... +..++.+|||++.||+|||+.| .+ .
T Consensus 4 ~~~~lvlvRHGes~wN~e~~~~G~~D~~Lte~G~~qA~~~~~~l~~~--~~~~~~~~tS~l~RakqT~~~il~~~~~~~~ 81 (214)
T KOG0235|consen 4 NTFRLVLVRHGESEWNKENIFQGWIDAPLTEKGEEQAKAAAQRLKDL--NIEFDVCYTSDLKRAKQTAELILEELKQKKV 81 (214)
T ss_pred cceEEEEEecCchhhhhhCcccccccCccChhhHHHHHHHHHHHHhc--CCcccEEecCHHHHHHHHHHHHHHhhccCCc
Confidence 45789999999999999999999 9999999999999999999766 6789999999999999999999 23 7
Q ss_pred CccccccccccccCcCCCCCHHHHHHhCHHH--HHHHHhCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005388 630 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE--YEARKKDK-LRYRYPRGESYLDVIQRFAACPCSIWCL 696 (699)
Q Consensus 630 ~v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~--~~~~~~d~-~~~~~PgGES~~dv~~Rv~~~L~~L~~e 696 (699)
|+....+|+|+++|.++|+...++.++++++ +..|.... ....+|.|||+.++..|+.++|++.+..
T Consensus 82 pv~~~~~L~ER~yG~l~Gl~~~e~~~~~g~~~~~~~~r~~~~~~~~~p~~EsL~~~~~R~~~~~~e~i~~ 151 (214)
T KOG0235|consen 82 PVLYTWRLNERHYGDLQGLNKRETAKRYGEEQVYEDPRLSDLDEIPLPDGESLKDCLDRLLPFWNEEIAK 151 (214)
T ss_pred ceEechhhchhhhccccCccHHHHHHHcchhccccchhhccCCcCCCCCCccHHHHHHHHHHHHHHhhhh
Confidence 8899999999999999999999999999987 45555443 3455789999999999999999987654
No 24
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=99.79 E-value=5.2e-19 Score=182.52 Aligned_cols=122 Identities=25% Similarity=0.273 Sum_probs=102.8
Q ss_pred cccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cC---CCccccccccccccC
Q 005388 572 DNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPKIQWRALDEINAG 643 (699)
Q Consensus 572 ~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g---~~v~~~~~L~E~~~G 643 (699)
+|..++++| |.|||+.|++||+.+++.|... +.+++.|||||++||+|||++| .+ .++..+++|+|+++|
T Consensus 1 ~N~~~~~qG~~D~pLTe~G~~QA~~l~~~L~~~--~~~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~L~E~~~G 78 (236)
T PTZ00123 1 WNKENRFTGWTDVPLSEKGVQEAREAGKLLKEK--GFRFDVVYTSVLKRAIKTAWIVLEELGQLHVPVIKSWRLNERHYG 78 (236)
T ss_pred CcccCceeCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCCCCCCceeCchhhhcccc
Confidence 577788888 9999999999999999988643 4679999999999999999998 22 467788999999999
Q ss_pred cCCCCCHHHHHHhCHHHHHHHHhCCCC-------------------------CCCCCCCCHHHHHHHHHHHHHHHHH
Q 005388 644 VCDGMTYEEIKKNMPEEYEARKKDKLR-------------------------YRYPRGESYLDVIQRFAACPCSIWC 695 (699)
Q Consensus 644 ~~eG~t~~ei~~~~P~~~~~~~~d~~~-------------------------~~~PgGES~~dv~~Rv~~~L~~L~~ 695 (699)
.|||++++++.+.+|+.+..|+.+++. +++|+|||+.++.+|+.++|++++.
T Consensus 79 ~~EG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gES~~~~~~Rv~~~l~~li~ 155 (236)
T PTZ00123 79 ALQGLNKSETAEKHGEEQVKIWRRSYDIPPPPLEKSDERYPGNDPVYKDIPKDALPNTECLKDTVERVLPYWEDHIA 155 (236)
T ss_pred cccCCCHHHHHHHccHHHHHHHhcccCCCCCCcccccccccccchhhhccccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999874444333221 3458999999999999999998753
No 25
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=99.78 E-value=8.8e-19 Score=157.51 Aligned_cols=93 Identities=28% Similarity=0.504 Sum_probs=85.7
Q ss_pred EEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEEecCCCCCceeeccCCCc
Q 005388 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPNR 112 (699)
Q Consensus 33 v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~g~NR 112 (699)
|+|+|.+|++.+++.++|+|+++.||+|++++|++|+....+.|++++++|....++||||++++.++ ..+.||.|+||
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi~~~~~-~~~~WE~g~nr 80 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYIIANKDS-GVVSWENGPNR 80 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEEEeCCC-CcEEEEcCCCe
Confidence 79999999999999999999999999999999999999999999999999988779999999998765 67889999999
Q ss_pred cccCCCCCCCceEE
Q 005388 113 LLTGGALQGDSRSA 126 (699)
Q Consensus 113 ~l~~~~~~~~~~~~ 126 (699)
.+..|.++.....+
T Consensus 81 ~~~~p~~~~~~~~~ 94 (99)
T cd05816 81 ELSAPSLKGESSTL 94 (99)
T ss_pred EEECCccCCCCceE
Confidence 99999986664433
No 26
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.2e-18 Score=173.43 Aligned_cols=134 Identities=24% Similarity=0.244 Sum_probs=118.3
Q ss_pred CcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh------cCCC
Q 005388 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI------AGFP 630 (699)
Q Consensus 559 ~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i------~g~~ 630 (699)
|++++|+|||||+||..+++.| |.+||+.|+.||...|+.|++. +..||.+|||-|+||++|+.++ ..+|
T Consensus 1 ~~~Lvl~RHGqSeWN~~NlFtGW~Dv~LtekG~~EA~~ag~llk~~--~~~~dia~TS~L~RAi~T~~i~L~e~d~~~ip 78 (230)
T COG0588 1 MMKLVLLRHGQSEWNKENLFTGWVDVDLTEKGISEAKAAGKLLKEE--GLEFDIAYTSVLKRAIKTLNIVLEESDQLWIP 78 (230)
T ss_pred CceEEEEecCchhhhhcCceeeeeecCcchhhHHHHHHHHHHHHHc--CCCcceeehHHHHHHHHHHHHHhhhhcccCcc
Confidence 4789999999999999999999 9999999999999999999876 7899999999999999999998 3578
Q ss_pred ccccccccccccCcCCCCCHHHHHHhCHHH-HHHHHhCCCCCCCC---------------------C----CCCHHHHHH
Q 005388 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKLRYRYP---------------------R----GESYLDVIQ 684 (699)
Q Consensus 631 v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-~~~~~~d~~~~~~P---------------------g----GES~~dv~~ 684 (699)
+....+|+|+++|.+.|+...+..++|.++ +..|.+ .+...+| + +||+.+..+
T Consensus 79 v~kswrLNERhYG~LqGlnK~~t~~kyGeeqv~~wRR-sydi~PP~~~~~~~~~~~~d~ry~~~~~~~~p~~EsLkdt~~ 157 (230)
T COG0588 79 VIKSWRLNERHYGALQGLNKAETAAKYGEEQVLIWRR-SYDIPPPKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVE 157 (230)
T ss_pred hhhHHHhhhhhhhhhhcCChHHHHHHHhHHHHHHHHH-hcCCCCCCcccccccccccccccccccccCCCccchHHHHHH
Confidence 888889999999999999999999999876 455554 3455555 3 499999999
Q ss_pred HHHHHHHHHHH
Q 005388 685 RFAACPCSIWC 695 (699)
Q Consensus 685 Rv~~~L~~L~~ 695 (699)
|+.++|++.+.
T Consensus 158 Rv~Pyw~~~I~ 168 (230)
T COG0588 158 RVLPYWEDDIA 168 (230)
T ss_pred HhhHHHHHHhh
Confidence 99999997553
No 27
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=99.75 E-value=2e-18 Score=154.10 Aligned_cols=90 Identities=26% Similarity=0.493 Sum_probs=75.0
Q ss_pred eEEEEEEEEecccCCCcEEEEecCCCccCCCCcccccccccc----CCCceEEEEecCCCCCceeeEEEEecCCCCCcee
Q 005388 30 QFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE----SASMWELSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (699)
Q Consensus 30 ~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~----~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~ 105 (699)
|.-|+|+| +.++.+++.|+|+||+++||+||++||++|... +++.|.+++.+|. ..+|||||++++.+. .+.
T Consensus 1 ~v~V~F~v-~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~-~~~~eYKy~i~~~~g--~~~ 76 (96)
T PF00686_consen 1 QVSVTFRV-NYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPA-GTPFEYKYVIKDADG--NVI 76 (96)
T ss_dssp EEEEEEEE-SE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEET-TSEEEEEEEEEETTS--EEE
T ss_pred CEEEEEEE-EeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcC-CCEEEEEEEEEeCCC--CEE
Confidence 56799999 569999999999999999999999999999975 6799999999999 668999999988666 669
Q ss_pred eccCCCccccCCCCCCCc
Q 005388 106 VEEGPNRLLTGGALQGDS 123 (699)
Q Consensus 106 wE~g~NR~l~~~~~~~~~ 123 (699)
||.|+||.+..|.....+
T Consensus 77 WE~g~nR~~~~~~~~~~~ 94 (96)
T PF00686_consen 77 WESGENRVLTVPSSGSST 94 (96)
T ss_dssp E-SSSEEEEE--SSSEEE
T ss_pred ECCCCCEEEECCCCCcee
Confidence 999999999988776544
No 28
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.68 E-value=2.2e-16 Score=153.82 Aligned_cols=100 Identities=26% Similarity=0.329 Sum_probs=92.9
Q ss_pred CCCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 005388 347 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM 426 (699)
Q Consensus 347 ~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl 426 (699)
.++++.+|||+|||||||||||.+|+++|...|+.+.++++|.. ++|++.+.+|+++++.++.++..++|+...+
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv---R~gL~~dLgFs~edR~eniRRvaevAkll~d-- 93 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV---RHGLNRDLGFSREDRIENIRRVAEVAKLLAD-- 93 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH---hhcccCCCCCChHHHHHHHHHHHHHHHHHHH--
Confidence 45688999999999999999999999999999999999999766 6788999999999999999999999999555
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHHHc
Q 005388 427 ISWMHEGGQVGIFDATNSSRKRRNMLMKMAE 457 (699)
Q Consensus 427 ~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~ 457 (699)
+|.+||+..+.+.++.|++.+++.+
T Consensus 94 ------aG~iviva~ISP~r~~R~~aR~~~~ 118 (197)
T COG0529 94 ------AGLIVIVAFISPYREDRQMARELLG 118 (197)
T ss_pred ------CCeEEEEEeeCccHHHHHHHHHHhC
Confidence 9999999999999999999999944
No 29
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=99.68 E-value=1.2e-16 Score=144.17 Aligned_cols=93 Identities=25% Similarity=0.292 Sum_probs=81.4
Q ss_pred ceEEEEEEEEecccCCCcEEEEecCCCccCCCCcccccccc----ccCCCceEEEEecCCCCCceeeEEEEecCCCCCce
Q 005388 29 GQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMG----RESASMWELSFVVPPNHETLDFKFLLKPKYGNGPC 104 (699)
Q Consensus 29 ~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~----~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~ 104 (699)
.|.-|+|+|++|++..++.++|+||.|.||+|++.+|+.|. ....+.|.+++++|... ++||||++++.+ ..+
T Consensus 1 ~~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~-~~eyK~~~~~~~--~~~ 77 (101)
T cd05807 1 DQVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGT-TIEFKFIKKNGD--NTV 77 (101)
T ss_pred CcEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCC-cEEEEEEEECCC--CCE
Confidence 47889999999999999999999999999999999999643 35789999999999987 899999999865 356
Q ss_pred eeccCCCccccCCCCCCCce
Q 005388 105 IVEEGPNRLLTGGALQGDSR 124 (699)
Q Consensus 105 ~wE~g~NR~l~~~~~~~~~~ 124 (699)
.||.|+||.+..|....++.
T Consensus 78 ~WE~g~nr~~~~p~~~~~~~ 97 (101)
T cd05807 78 TWESGSNHTYTAPSSTTGTI 97 (101)
T ss_pred EEEeCCCEEEeCCCCCceEE
Confidence 79999999999997655443
No 30
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.65 E-value=5.3e-16 Score=137.66 Aligned_cols=85 Identities=25% Similarity=0.436 Sum_probs=77.5
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccC-CCceEEEEecCC-CCCceeeEEEEecCCCCCceeeccC
Q 005388 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRES-ASMWELSFVVPP-NHETLDFKFLLKPKYGNGPCIVEEG 109 (699)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~-~~~W~~~l~~~~-~~~~leyKf~~~~~~~~~~~~wE~g 109 (699)
+|+|++++ ++..++.++|+||++.||+||+++|++|+..+ .+.|.++++++. ...+|+|||++++.+ ..+.||.|
T Consensus 1 ~v~f~i~~-~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~~~~~--~~~~wE~~ 77 (96)
T cd05467 1 QVRFQVRC-TTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVIVDDD--GNVQWESG 77 (96)
T ss_pred CEEEEEEE-ECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEEECCC--CCEEeccC
Confidence 48999999 88999999999999999999999999999998 999999999998 446899999999866 57789999
Q ss_pred CCccccCCCC
Q 005388 110 PNRLLTGGAL 119 (699)
Q Consensus 110 ~NR~l~~~~~ 119 (699)
+||.+..|..
T Consensus 78 ~~r~~~~~~~ 87 (96)
T cd05467 78 SNRVLTVPST 87 (96)
T ss_pred CCeEEEcCCC
Confidence 9999988754
No 31
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=99.65 E-value=4.9e-16 Score=140.83 Aligned_cols=97 Identities=25% Similarity=0.339 Sum_probs=84.1
Q ss_pred eEEEEEEEEe-cccCCCcEEEEecCCCccCCCCcc--ccc-cccccCCCceEEEEecCCCCCceeeEEEEecCCCCCcee
Q 005388 30 QFYVSLKMVN-IKLKGDLIPHVYGSVPLVGSWDSS--KAL-AMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (699)
Q Consensus 30 ~~~v~lkv~a-P~l~~~~~l~l~Gs~~~LG~W~~~--kal-~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~ 105 (699)
|.-|+|.|.+ |++..++.++|+||.+.||+||+. +|+ +|...++++|.+++++|... ++||||++++.+ ..+.
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~-~veyK~v~~~~~--g~v~ 78 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGT-YIEFKFLKAPAD--GTGT 78 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCC-cEEEEEEEECCC--CCEE
Confidence 5679999976 799999999999999999999996 456 89999999999999999985 899999999866 3677
Q ss_pred eccCCCccccCCCCCCCceEEEEE
Q 005388 106 VEEGPNRLLTGGALQGDSRSALFR 129 (699)
Q Consensus 106 wE~g~NR~l~~~~~~~~~~~~~~~ 129 (699)
||.|+||.+..|....++..+.++
T Consensus 79 WE~g~Nr~~~~p~~~~~~~~~~w~ 102 (103)
T cd05820 79 WEGGSNHAYTTPSGGTGTVTVTWQ 102 (103)
T ss_pred EEeCCCEeEECCCCCcEEEEEEec
Confidence 999999999999877766655443
No 32
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.65 E-value=9.7e-16 Score=148.53 Aligned_cols=116 Identities=25% Similarity=0.336 Sum_probs=88.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
+|++|||+|||||||||||++|.++|...++++.++++|.+| .+++.+.+|..+++.+.++++.++|+.+.+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR---~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~----- 72 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR---HGLNADLGFSKEDREENIRRIAEVAKLLAD----- 72 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC---TTTTTT--SSHHHHHHHHHHHHHHHHHHHH-----
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh---hccCCCCCCCHHHHHHHHHHHHHHHHHHHh-----
Confidence 478999999999999999999999999999999999997774 466778889888999999999999988655
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHH
Q 005388 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERN 478 (699)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rr 478 (699)
+|.+||++++.+.++.|+.++++.... .++.|.+.|+ .+++++|
T Consensus 73 ---~G~ivIva~isp~~~~R~~~R~~~~~~-~f~eVyv~~~-~e~~~~R 116 (156)
T PF01583_consen 73 ---QGIIVIVAFISPYREDREWARELIPNE-RFIEVYVDCP-LEVCRKR 116 (156)
T ss_dssp ---TTSEEEEE----SHHHHHHHHHHHHTT-EEEEEEEES--HHHHHHH
T ss_pred ---CCCeEEEeeccCchHHHHHHHHhCCcC-ceEEEEeCCC-HHHHHHh
Confidence 999999999999999999999994422 3444444455 5555554
No 33
>COG0645 Predicted kinase [General function prediction only]
Probab=99.63 E-value=2.3e-15 Score=146.17 Aligned_cols=143 Identities=16% Similarity=0.195 Sum_probs=121.0
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhC-----CCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG-----VNQSADFFRADNPEGMEARNEVAALAMED 425 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g-----~~~~~~f~~~~~~~~~~~~~~vA~~~l~d 425 (699)
+.+++|+|+||+||||+|+.|++.|++..+++|++ |+.+.| ......|+.......|..+...|..++.
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~i-----rk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~- 74 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVI-----RKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLS- 74 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhcCceEEehHHH-----HHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHh-
Confidence 36899999999999999999999999988777766 998887 2334456677788889999999999888
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHH
Q 005388 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (699)
Q Consensus 426 l~~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~ 504 (699)
.|..||+|+++..+..|+.++.+ ...++.+..|.|.|+ +++++.|+..|+. |.++. +.+.+
T Consensus 75 -------~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap-~~v~~~rl~aR~~---d~sDA-~~~il------ 136 (170)
T COG0645 75 -------SGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAP-EEVLRGRLAARKG---DASDA-TFDIL------ 136 (170)
T ss_pred -------CCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCc-HHHHHHHHHHhCC---Ccccc-hHHHH------
Confidence 89999999999999999999999 788889988999887 8999999998854 77877 77666
Q ss_pred HHHhhhhhccCCCCC
Q 005388 505 RLANYEKVYEPVDEG 519 (699)
Q Consensus 505 Ri~~y~~~yEpl~e~ 519 (699)
..+...++|+.+.
T Consensus 137 --~~q~~~~~~~~~~ 149 (170)
T COG0645 137 --RVQLAEDEPWTEW 149 (170)
T ss_pred --HHHHhhhCCcccc
Confidence 6666677888754
No 34
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.62 E-value=1.2e-15 Score=136.89 Aligned_cols=87 Identities=22% Similarity=0.338 Sum_probs=79.2
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEEecCCCC-CceeeccCC
Q 005388 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGN-GPCIVEEGP 110 (699)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~-~~~~wE~g~ 110 (699)
.|+|.+.+-+...++.++|+|+++.||+|++++|++|..++++.|.+++++|... +|||||++++.+.. ..+.||.|+
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~-~veyKyv~~~~~~~~~~v~WE~g~ 80 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPAST-NVEWKCLKRNETNPTAGVQWQGGG 80 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCC-eEEEEEEEEcCCCCcceEEEeeCC
Confidence 5788888888999999999999999999999999999999999999999999874 79999999987753 557899999
Q ss_pred CccccCCCC
Q 005388 111 NRLLTGGAL 119 (699)
Q Consensus 111 NR~l~~~~~ 119 (699)
||.+..|.-
T Consensus 81 Nr~~~~p~~ 89 (97)
T cd05810 81 NNQLTTGNS 89 (97)
T ss_pred CEEEeCCCC
Confidence 999998876
No 35
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.61 E-value=1.8e-15 Score=136.39 Aligned_cols=82 Identities=22% Similarity=0.430 Sum_probs=76.2
Q ss_pred EEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEEecCCCCCceeeccCCCc
Q 005388 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPNR 112 (699)
Q Consensus 33 v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~g~NR 112 (699)
|+|+++++ +..++.|+|+|+++.||+|++++|++|+..+.+.|++++++|. ..++||||++++.++...+.||.|+||
T Consensus 2 v~F~i~~~-t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~-~~~veYKY~i~~~~~~~~~~WE~g~nr 79 (100)
T cd05817 2 VTFKIHYP-TQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPE-SVYIEYKYFVSNYDDPNTVLWESGPNR 79 (100)
T ss_pred EEEEEEEE-cCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECC-CCcEEEEEEEEecCCCCCeEecCCCCE
Confidence 78999999 8899999999999999999999999999999999999999998 567999999998776667899999999
Q ss_pred cccC
Q 005388 113 LLTG 116 (699)
Q Consensus 113 ~l~~ 116 (699)
.+..
T Consensus 80 ~~~~ 83 (100)
T cd05817 80 VLRT 83 (100)
T ss_pred EEEe
Confidence 9884
No 36
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=99.59 E-value=5e-15 Score=133.24 Aligned_cols=87 Identities=16% Similarity=0.244 Sum_probs=76.1
Q ss_pred eEEEEEEEEecccCCCcEEEEecCCCccCCCCcccc-cccc-ccCCCceEEEEecCCCCCceeeEEEEecCCCCCceeec
Q 005388 30 QFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKA-LAMG-RESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVE 107 (699)
Q Consensus 30 ~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~ka-l~M~-~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE 107 (699)
|.-|+|+|++|++..++.++|+||.+.||+|++.++ +.|. ....+.|.+++++|... ++||||++++.+. ..+.||
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~-~veyKyv~~~~~~-~~~~WE 79 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGR-NIEFKAIKKSKDG-TNKSWQ 79 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCC-cEEEEEEEEcCCC-CeeEEe
Confidence 678999999999999999999999999999999872 5554 35679999999999885 8999999998663 256799
Q ss_pred cCCCccccCCC
Q 005388 108 EGPNRLLTGGA 118 (699)
Q Consensus 108 ~g~NR~l~~~~ 118 (699)
.|+||.+..|.
T Consensus 80 ~g~nr~~~~p~ 90 (99)
T cd05809 80 GGQQSWYPVPL 90 (99)
T ss_pred cCCCeeEECCC
Confidence 99999999987
No 37
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=99.59 E-value=4.9e-15 Score=131.57 Aligned_cols=83 Identities=25% Similarity=0.460 Sum_probs=74.3
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEEecCCCCCceeeccCCC
Q 005388 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPN 111 (699)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~g~N 111 (699)
-|+|+|++ ++..++.++|+||++.||+||++||++|+....+.|.+++++|... ++||||++++... ...||.|+|
T Consensus 2 ~v~F~v~~-~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~-~~eYKy~~~~~~~--~~~WE~~~n 77 (95)
T cd05808 2 AVTFNVTA-TTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGT-AIEYKYIKKDGSG--TVTWESGPN 77 (95)
T ss_pred eEEEEEEE-ECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCC-eEEEEEEEECCCC--cEEEecCCC
Confidence 48899999 7889999999999999999999999999999999999999999865 7999999987433 356999999
Q ss_pred ccccCCC
Q 005388 112 RLLTGGA 118 (699)
Q Consensus 112 R~l~~~~ 118 (699)
|.+..|.
T Consensus 78 r~~~~~~ 84 (95)
T cd05808 78 RTATTPA 84 (95)
T ss_pred EEEECCC
Confidence 9999764
No 38
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.58 E-value=3.4e-14 Score=133.61 Aligned_cols=139 Identities=21% Similarity=0.225 Sum_probs=89.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~ 432 (699)
||+|+|+|||||||+|+.|++.++ ..+++.|+++....+....... ...... ..+...+.++.....+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~l~ 68 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIRRRLAGEDPPSPS---DYIEAE----ERAYQILNAAIRKALR 68 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHHHHHCCSSSGCCC---CCHHHH----HHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHHHHHcccccccch---hHHHHH----HHHHHHHHHHHHHHHH
Confidence 799999999999999999998866 5568888888866552222111 111111 1111122122222223
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHH
Q 005388 433 GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (699)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri 506 (699)
.|..+|+|.+|..+..|+.+.++ .+.++++.+|.+.|+ .+++.+|+..|.... +.... .+++.++++.+++
T Consensus 69 ~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~-~~~~~~R~~~R~~~~-~~~~~-~~~~~~~~~~~~~ 140 (143)
T PF13671_consen 69 NGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAP-EETLRERLAQRNREG-DKRFE-VPEEVFDRMLARF 140 (143)
T ss_dssp TT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHH-HHHHHHHHHTTHCCC-TTS-----HHHHHHHHHHH
T ss_pred cCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECC-HHHHHHHHHhcCCcc-ccccc-CcHHHHHHHHHhh
Confidence 68999999999999999999998 788999999999887 688889998887744 33323 3445555554444
No 39
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=99.58 E-value=8e-15 Score=132.15 Aligned_cols=85 Identities=24% Similarity=0.343 Sum_probs=72.0
Q ss_pred EEEEEEecccCCCcEEEEecCCCccCCCCccccccccccC---CCceEEEEecCCCCCceeeEEEEecCCCCCceeeccC
Q 005388 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRES---ASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEG 109 (699)
Q Consensus 33 v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~---~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~g 109 (699)
|+|++... ...++.++|+|+++.||+|++++|++|..++ .++|++++++|. ..++||||++++. +...+.||.|
T Consensus 2 l~f~i~~~-t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~-~~~veYky~v~~~-~~~~~~wE~g 78 (101)
T cd05815 2 LSFKLPYY-TQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPP-GFSSEYNYYVVDD-RKSVLRSESG 78 (101)
T ss_pred EEEEEEEE-ccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCC-CCcEEEEEEEEcC-CCcEEEeecC
Confidence 67777664 4568999999999999999999999997753 448999999998 5789999999875 5556779999
Q ss_pred CCccccCCCCC
Q 005388 110 PNRLLTGGALQ 120 (699)
Q Consensus 110 ~NR~l~~~~~~ 120 (699)
+||.+..|...
T Consensus 79 ~nr~~~~~~~~ 89 (101)
T cd05815 79 EKRKLVLPEGL 89 (101)
T ss_pred CCEeEECCccc
Confidence 99999988853
No 40
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.57 E-value=4.1e-15 Score=138.37 Aligned_cols=83 Identities=19% Similarity=0.422 Sum_probs=74.4
Q ss_pred EEEEEEecccCCCcEEEEecCCCccCCCCcccccccccc--CCCceEEEEecCCCCCceeeEEEEecC----CCCCce--
Q 005388 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE--SASMWELSFVVPPNHETLDFKFLLKPK----YGNGPC-- 104 (699)
Q Consensus 33 v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~--~~~~W~~~l~~~~~~~~leyKf~~~~~----~~~~~~-- 104 (699)
|+|+|++|++..++.++|+|++++||+|++++|++|..+ ..+.|.+++++|... ++||||++++. .+.+.+
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~-~veYkY~~~~~~~~~~~~~~~~~ 81 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGV-DFQYRYFVAVVLNDSGPCQVIVR 81 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCC-eEEEEEEEEEeccCCCCccEEEe
Confidence 799999999999999999999999999999999999998 889999999999966 79999999874 344566
Q ss_pred eeccCCC-ccccC
Q 005388 105 IVEEGPN-RLLTG 116 (699)
Q Consensus 105 ~wE~g~N-R~l~~ 116 (699)
.||+++| |.+..
T Consensus 82 ~WE~~~~~R~~~~ 94 (120)
T cd05814 82 KWETHLQPRSIKP 94 (120)
T ss_pred eccCCCCccEecc
Confidence 8999999 76653
No 41
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=99.57 E-value=1.4e-14 Score=131.56 Aligned_cols=92 Identities=24% Similarity=0.443 Sum_probs=78.7
Q ss_pred CceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccC----CCceEEEEecCCCCCceeeEEEEecCCCCCc
Q 005388 28 GGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRES----ASMWELSFVVPPNHETLDFKFLLKPKYGNGP 103 (699)
Q Consensus 28 ~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~----~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~ 103 (699)
+.+.-|+|++.++. ..++.++|+|+++.||+|++.+|++|..++ .+.|.+++++|.. .++||||++++.+ ..
T Consensus 4 ~~~v~V~F~i~~~t-~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~-~~veYKy~~~~~~--~~ 79 (106)
T cd05811 4 ATTVAVTFNERVTT-SYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAG-TSFEYKFIRKESD--GS 79 (106)
T ss_pred CCEEEEEEEEeeEc-CCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCC-CcEEEEEEEEcCC--Cc
Confidence 45677999999975 689999999999999999999999998764 5899999999984 4799999998755 46
Q ss_pred eeeccCCCccccCCCCCCCc
Q 005388 104 CIVEEGPNRLLTGGALQGDS 123 (699)
Q Consensus 104 ~~wE~g~NR~l~~~~~~~~~ 123 (699)
+.||+|+||.+..|....+.
T Consensus 80 ~~WE~~~nr~~~~~~~~~~~ 99 (106)
T cd05811 80 VTWESDPNRSYTVPSGCGTT 99 (106)
T ss_pred EEEecCCCeEEECCCCCCcc
Confidence 78999999999988764433
No 42
>PLN02950 4-alpha-glucanotransferase
Probab=99.52 E-value=3.2e-14 Score=170.41 Aligned_cols=102 Identities=25% Similarity=0.405 Sum_probs=93.0
Q ss_pred CCCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEEecCCCCCcee
Q 005388 26 HAGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (699)
Q Consensus 26 ~~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~ 105 (699)
..+++.-|+|+|+||++..++.++|+||++.||+||+++|++|+.++++.|++++++++...+|||||++++.+ ..+.
T Consensus 148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~--g~v~ 225 (909)
T PLN02950 148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAE--GLVS 225 (909)
T ss_pred CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCC--CceE
Confidence 45778899999999999999999999999999999999999999999999999999999888999999999965 3578
Q ss_pred eccCCCccccCCCCCCCceEEEEE
Q 005388 106 VEEGPNRLLTGGALQGDSRSALFR 129 (699)
Q Consensus 106 wE~g~NR~l~~~~~~~~~~~~~~~ 129 (699)
||.|+||.+..|.+.+++..+++.
T Consensus 226 WE~g~NR~~~~p~~~~~~~~~~~~ 249 (909)
T PLN02950 226 LELGVNRELSLDSSSGKPPSYIVA 249 (909)
T ss_pred EeeCCCceeecCcccCCceEEEec
Confidence 999999999999999877655543
No 43
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=99.52 E-value=4.3e-14 Score=150.96 Aligned_cols=114 Identities=22% Similarity=0.292 Sum_probs=83.7
Q ss_pred cceEEecccccccccCCcccCCCC---CCHHHHHHHHHHHHHHHHHhcc----CCCCEEEEcChHHHHHHHhhh---c-C
Q 005388 560 RPILLTRHGESRDNVRGRIGGDTI---LSDAGEIYAKKLANFVEKRLKS----ERAASIWTSTLQRTILTASPI---A-G 628 (699)
Q Consensus 560 ~~I~LVRHGeS~~N~~~~~~GD~p---LTe~G~~QA~~La~~L~~~l~~----~~~~~V~sSpL~RA~QTA~~i---~-g 628 (699)
++||||||||+.++ + ..|.+ ||+.|++||++++++|.+.... .+++.||||||.||+|||++| . +
T Consensus 103 ~~L~LVRHGq~~~~--~--~~d~~~~~LTe~G~~QA~~lg~~L~~~~~~~~~~~~~d~IysSPL~RA~qTAeiIa~~~~~ 178 (299)
T PTZ00122 103 RQIILVRHGQYINE--S--SNDDNIKRLTELGKEQARITGKYLKEQFGEILVDKKVKAIYHSDMTRAKETAEIISEAFPG 178 (299)
T ss_pred eEEEEEECCCCCCC--C--CCCcccCCCCHHHHHHHHHHHHHHHHhhccccccCCCCEEEEcCcHHHHHHHHHHHHhCCC
Confidence 78999999996544 2 23444 9999999999999988754221 278999999999999999998 2 4
Q ss_pred CCccccccccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 005388 629 FPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWCLC 697 (699)
Q Consensus 629 ~~v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~ea 697 (699)
.++..+++|+|. ++..+. | .+..+.++++|+ .++..|+..+++++....
T Consensus 179 ~~v~~d~~LrEG-------~~~~~~----~--------~~~~~~~~gee~-~~~~~Rv~~al~~i~~r~ 227 (299)
T PTZ00122 179 VRLIEDPNLAEG-------VPCAPD----P--------PSRGFKPTIEEI-LEDMKRIEAAFEKYFHRP 227 (299)
T ss_pred CCceeCcccccC-------CccccC----c--------cccccCCCcchH-HHHHHHHHHHHHHHHHhc
Confidence 678889999992 222211 1 012344556666 666999999999987543
No 44
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.51 E-value=6.1e-14 Score=124.60 Aligned_cols=84 Identities=21% Similarity=0.340 Sum_probs=71.3
Q ss_pred EEEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEEecCCCCCceeeccCC
Q 005388 31 FYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGP 110 (699)
Q Consensus 31 ~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~g~ 110 (699)
+.|+|+++... ..++.++|+||+++||+|+ +|++|... .+.|++++++|... ++||||++++.+. .+.||.|+
T Consensus 2 ~~v~F~~~~~~-~~Gq~l~v~G~~~~LG~W~--~~~~l~~~-~~~W~~~~~l~~~~-~ieyKy~~~~~~~--~v~WE~g~ 74 (92)
T cd05818 2 VKLQVRLDHQV-KFGEHVAILGSTKELGSWK--KKVPMNWT-ENGWVCDLELDGGE-LVEYKFVIVKRDG--SVIWEGGN 74 (92)
T ss_pred EEEEEEEEEEc-CCCCEEEEEeChHHHCCCC--CCCccccC-CCCEEEEEEeCCCC-cEEEEEEEEcCCC--CEEEEeCC
Confidence 46888888755 6799999999999999999 56778776 57899999999874 8999999998653 56799999
Q ss_pred CccccCCCCCC
Q 005388 111 NRLLTGGALQG 121 (699)
Q Consensus 111 NR~l~~~~~~~ 121 (699)
||.+..|....
T Consensus 75 Nr~~~~~~~~~ 85 (92)
T cd05818 75 NRVLELPKEGN 85 (92)
T ss_pred CEEEEccCCCC
Confidence 99999886644
No 45
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.51 E-value=6.1e-14 Score=125.05 Aligned_cols=79 Identities=25% Similarity=0.418 Sum_probs=72.3
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEEecCCCCCceeeccCCC
Q 005388 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPN 111 (699)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~g~N 111 (699)
-|+|+|++|++.+++.++|+||++.||+|++ +++|...+.+.|..++++|... ++||||++++ +...+.||.|+|
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~--~~~l~~~~~~~W~~~v~lp~~~-~ieYky~~~~--~~~~~~WE~~~n 76 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHS--YIPLQYVKDGFWSASVSLPVDT-HVEWKFVLVE--NGQVTRWEECSN 76 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCc--cccCcCCCCCCEEEEEEecCCC-cEEEEEEEEc--CCCEEEeecCCC
Confidence 4899999999999999999999999999996 8999999999999999999976 7999999976 446778999999
Q ss_pred cccc
Q 005388 112 RLLT 115 (699)
Q Consensus 112 R~l~ 115 (699)
|.+.
T Consensus 77 r~~~ 80 (95)
T cd05813 77 RLLE 80 (95)
T ss_pred eEEE
Confidence 9988
No 46
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=99.49 E-value=1.1e-13 Score=131.84 Aligned_cols=77 Identities=35% Similarity=0.463 Sum_probs=66.4
Q ss_pred ceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---c-CCCcccc
Q 005388 561 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A-GFPKIQW 634 (699)
Q Consensus 561 ~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~-g~~v~~~ 634 (699)
+|||||||++.++......+ |.+||+.|++||+.++++|... ..+++.|||||+.||+|||+++ . +.++...
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~--~~~~~~i~~Sp~~Ra~qTa~~l~~~~~~~~~~~~ 78 (153)
T cd07067 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKEL--GIKFDRIYSSPLKRAIQTAEIILEELPGLPVEVD 78 (153)
T ss_pred CEEEEECCCCcccccCcccCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECcHHHHHHHHHHHHHhcCCCCceeC
Confidence 58999999999987765544 8999999999999999988654 3478999999999999999999 2 5677888
Q ss_pred ccccc
Q 005388 635 RALDE 639 (699)
Q Consensus 635 ~~L~E 639 (699)
+.|+|
T Consensus 79 ~~L~e 83 (153)
T cd07067 79 PRLRE 83 (153)
T ss_pred ccchH
Confidence 88888
No 47
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=99.44 E-value=2.8e-13 Score=124.39 Aligned_cols=83 Identities=25% Similarity=0.330 Sum_probs=72.5
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCcccccccccc-------CCCceEEEEecCCCC--CceeeEEEEecCCCCC
Q 005388 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE-------SASMWELSFVVPPNH--ETLDFKFLLKPKYGNG 102 (699)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~-------~~~~W~~~l~~~~~~--~~leyKf~~~~~~~~~ 102 (699)
-|||.|.|--+++++.++|+||.|.||+||+++|++|..+ ..++|.++++++... .+|||||+.++ ..
T Consensus 2 ~~~f~~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~~~--~~- 78 (112)
T cd05806 2 LFRFGVVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLKRE--AG- 78 (112)
T ss_pred EEEEEEEEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEEeC--CC-
Confidence 4899999988899999999999999999999999999997 557899999999985 69999999876 22
Q ss_pred ceeec---cCCCccccCC
Q 005388 103 PCIVE---EGPNRLLTGG 117 (699)
Q Consensus 103 ~~~wE---~g~NR~l~~~ 117 (699)
.+.|| .++||.+.+.
T Consensus 79 ~v~WE~~~~~~nr~~~~~ 96 (112)
T cd05806 79 ALIWEGNGPHHDRCCVYD 96 (112)
T ss_pred eeEEecCCCCCCeEEecc
Confidence 67799 7799986544
No 48
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.43 E-value=5.5e-13 Score=153.60 Aligned_cols=147 Identities=16% Similarity=0.150 Sum_probs=115.7
Q ss_pred ccccCCCCCCccchhhHHHHHhhhcCCCCCccEEEEEEccCCCChhHHHHHHHHHHhh-cCCCceEeehhhHHHHhhCCC
Q 005388 320 DTETKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRRLKHGVN 398 (699)
Q Consensus 320 ~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~-~gi~tdv~~~gdyRr~~~g~~ 398 (699)
+.......|++...+..+++...++.+...++.+|||+|+|||||||+|++|++.|++ .+.++.+++.|.+|+.+ .
T Consensus 361 ~l~~G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l---~ 437 (568)
T PRK05537 361 RLREGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHL---S 437 (568)
T ss_pred HHHCCCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhc---c
Confidence 3356888999999899899999998888889999999999999999999999999997 67778888888887644 3
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHH
Q 005388 399 QSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIER 477 (699)
Q Consensus 399 ~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~r 477 (699)
....|.+.+++..++++..++..++. .|.+||+|++++.++.|+.++++ .+.+ .+++|.+.++ .+++.+
T Consensus 438 ge~~f~~~er~~~~~~l~~~a~~v~~--------~Gg~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p-~e~l~~ 507 (568)
T PRK05537 438 SELGFSKEDRDLNILRIGFVASEITK--------NGGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVATP-LEVCEQ 507 (568)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHh--------CCCEEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCC-HHHHHH
Confidence 34567666677667666666666554 79999999999999999999999 4433 3334444444 677777
Q ss_pred HH
Q 005388 478 NI 479 (699)
Q Consensus 478 rI 479 (699)
|+
T Consensus 508 R~ 509 (568)
T PRK05537 508 RD 509 (568)
T ss_pred hc
Confidence 76
No 49
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.42 E-value=1.6e-12 Score=147.94 Aligned_cols=137 Identities=17% Similarity=0.169 Sum_probs=96.9
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
.+|.||+|+|+|||||||+|+.+++.+++.. ++.|++.. +......+..+|.
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~-----vn~D~lg~-------------------~~~~~~~a~~~L~---- 418 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKH-----VNADTLGS-------------------TQNCLTACERALD---- 418 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCeE-----ECcHHHHH-------------------HHHHHHHHHHHHh----
Confidence 4789999999999999999999998766554 44333311 2223334444444
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHH
Q 005388 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (699)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri~ 507 (699)
.|..||+|+||.+++.|..+.++ .++++++.++.+.++ .+++++|++.|.. .+.++..-++.++ .
T Consensus 419 ----~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p-~e~~~~Rn~~R~~--~~~s~~~vp~~v~-------~ 484 (526)
T TIGR01663 419 ----QGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAP-LAQAKHNIAFREL--SDSAHIKIKDMVF-------N 484 (526)
T ss_pred ----CCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC-HHHHHHHHHhhcc--CCcccCCCCHHHH-------H
Confidence 79999999999999999999999 788999999999887 7788888887765 2333331235553 4
Q ss_pred hhhhhccCCC--CC-CceEEeec
Q 005388 508 NYEKVYEPVD--EG-SYIKMIDM 527 (699)
Q Consensus 508 ~y~~~yEpl~--e~-~yik~in~ 527 (699)
.|.+.|||.+ |+ .-|..||+
T Consensus 485 ~~~k~fE~Pt~~EGF~~I~~v~f 507 (526)
T TIGR01663 485 GMKKKFEAPALAEGFIAIHEINF 507 (526)
T ss_pred HHHhhCCCCCcccCceEEEEEeC
Confidence 5555666654 44 55566666
No 50
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.41 E-value=4.3e-12 Score=134.61 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=98.9
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCC-cCCCCHH-HHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADF-FRADNPE-GMEARNEVAALAMEDMIS 428 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f-~~~~~~~-~~~~~~~vA~~~l~dl~~ 428 (699)
+.+|+|+|+|||||||+|++|++++. ....++.|++|+...+......+ +....+. ........+..+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 71 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAA------ 71 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHH------
Confidence 57899999999999999999999872 34567777888865443221111 1111111 111222222222
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHH
Q 005388 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (699)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri~ 507 (699)
+ ..|..+|+|+++..+..|+.+.++ .+.++.+.+|.+.| +.+++.+|+..|.. .. .+++.++..++|++
T Consensus 72 -l-~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~-~~e~~~~R~~~R~~------~~-~~~~~i~~~~~~~~ 141 (300)
T PHA02530 72 -L-KSGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDV-PVEELVKRNRKRGE------RA-VPEDVLRSMFKQMK 141 (300)
T ss_pred -H-HcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCC-CHHHHHHHHHccCc------CC-CCHHHHHHHHHHHH
Confidence 2 368899999999999999999988 66777777777766 58888999987732 12 46678888899999
Q ss_pred hhhhhccCC
Q 005388 508 NYEKVYEPV 516 (699)
Q Consensus 508 ~y~~~yEpl 516 (699)
.|...-.|+
T Consensus 142 ~~~~~~~p~ 150 (300)
T PHA02530 142 EYRGLVWPV 150 (300)
T ss_pred HhcCCCCce
Confidence 886554444
No 51
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.39 E-value=2.9e-12 Score=123.29 Aligned_cols=114 Identities=22% Similarity=0.205 Sum_probs=85.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~ 432 (699)
+|+|+|+|||||||+|+.|++.+.+.+.++..++.+.+|+...+ ...|..+.+.+.++.+...++. +.+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~---~~~~~~~~~~~~~~~~~~~a~~--------l~~ 69 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNK---DLGFSREDREENIRRIAEVAKL--------LAD 69 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhh---ccCCCcchHHHHHHHHHHHHHH--------HHh
Confidence 58999999999999999999999887888888888888874422 2345444555555544444443 334
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHH
Q 005388 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNI 479 (699)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI 479 (699)
+|.+||+|+++..+..|..++++.+ ++++.++.+.|+. +++.+|.
T Consensus 70 ~G~~VIid~~~~~~~~R~~~~~l~~-~~~~~~i~l~~~~-e~~~~R~ 114 (149)
T cd02027 70 AGLIVIAAFISPYREDREAARKIIG-GGDFLEVFVDTPL-EVCEQRD 114 (149)
T ss_pred CCCEEEEccCCCCHHHHHHHHHhcC-CCCEEEEEEeCCH-HHHHHhC
Confidence 7999999999999999999998855 6778788887874 4555543
No 52
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=99.39 E-value=1.3e-12 Score=124.24 Aligned_cols=108 Identities=27% Similarity=0.394 Sum_probs=95.3
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~ 427 (699)
.++..+|||+||+||||||+|-+|.+.|...|.-+.++++|.+ ++|++.+.+|..+++.++.++..++|+...+
T Consensus 28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNv---RhGLN~DL~F~a~dR~ENIRRigeVaKLFAD--- 101 (207)
T KOG0635|consen 28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNV---RHGLNKDLGFKAEDRNENIRRIGEVAKLFAD--- 101 (207)
T ss_pred cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccc---ccccccccCcchhhhhhhHHHHHHHHHHHhc---
Confidence 4578899999999999999999999999999999999999766 7899999999999999999999999998444
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeC
Q 005388 428 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICN 470 (699)
Q Consensus 428 ~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~ 470 (699)
.|.+.|..-..+.+..|+..+++ .+.. |||++.+
T Consensus 102 -----ag~iciaSlISPYR~dRdacRel~~~~~----FiEvfmd 136 (207)
T KOG0635|consen 102 -----AGVICIASLISPYRKDRDACRELLPEGD----FIEVFMD 136 (207)
T ss_pred -----cceeeeehhcCchhccHHHHHHhccCCC----eEEEEec
Confidence 89999999999999999999999 4444 4554433
No 53
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.33 E-value=2.2e-11 Score=128.42 Aligned_cols=135 Identities=18% Similarity=0.253 Sum_probs=79.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~ 432 (699)
||+|||+|||||||+|+.|+++|...+.++.+++.++.+ ..... |.+...++..+. .+-.. +...|.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~-----~~~~~-y~~~~~Ek~~R~--~l~s~----v~r~ls- 69 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG-----IDRND-YADSKKEKEARG--SLKSA----VERALS- 69 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH------TTSS-S--GGGHHHHHH--HHHHH----HHHHHT-
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc-----cchhh-hhchhhhHHHHH--HHHHH----HHHhhc-
Confidence 799999999999999999999999988888889765553 12222 544444433221 11111 111233
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHH
Q 005388 433 GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (699)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri~ 507 (699)
...+||+|++|..+.+|..+.++ .+.+..+..|.|.|+.+..+++|..+... ... .++.+++...|++
T Consensus 70 ~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~-----~~~--~~e~i~~m~~RfE 138 (270)
T PF08433_consen 70 KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEP-----ERY--PEETIDDMIQRFE 138 (270)
T ss_dssp T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S-------S---HHHHHHHHHH--
T ss_pred cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCC-----CCC--CHHHHHHHHHHhc
Confidence 46899999999999999999999 77888888899999988888888543221 112 3456555555554
No 54
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.32 E-value=1.9e-11 Score=121.01 Aligned_cols=117 Identities=25% Similarity=0.291 Sum_probs=85.3
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
.++.+|+|+|+|||||||+|+.|+..+...+..+..++.+++|+... ....|...++...++.+..++...
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~---~~~~~~~~~~~~~~~~~~~~~~~~------ 86 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLN---KDLGFSEEDRKENIRRIGEVAKLF------ 86 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhc---cccCCCHHHHHHHHHHHHHHHHHH------
Confidence 46889999999999999999999999987777777888888877442 233454444555555555555443
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHH
Q 005388 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERN 478 (699)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rr 478 (699)
..+|.+||+|++++.+..|+.++.+.+. .+++++.+.|+ .+++.+|
T Consensus 87 --~~~G~~VI~d~~~~~~~~r~~~~~~~~~-~~~~~v~l~~~-~e~~~~R 132 (184)
T TIGR00455 87 --VRNGIIVITSFISPYRADRQMVRELIEK-GEFIEVFVDCP-LEVCEQR 132 (184)
T ss_pred --HcCCCEEEEecCCCCHHHHHHHHHhCcC-CCeEEEEEeCC-HHHHHHh
Confidence 3479999999999999999999988332 24555666666 4555544
No 55
>PRK06762 hypothetical protein; Provisional
Probab=99.31 E-value=3.4e-11 Score=116.86 Aligned_cols=115 Identities=15% Similarity=0.037 Sum_probs=77.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L 430 (699)
|.+|+|+|+|||||||+|+.|+++++ ....+++.|.+|+...+.... ......+.+...++. .
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~---~~~~~i~~D~~r~~l~~~~~~------~~~~~~~~~~~~~~~--------~ 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG---RGTLLVSQDVVRRDMLRVKDG------PGNLSIDLIEQLVRY--------G 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEecHHHHHHHhccccCC------CCCcCHHHHHHHHHH--------H
Confidence 68999999999999999999999973 356677888888754322110 011112223333333 2
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 431 HEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 431 ~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
.+.|.+||+|+++.....|..+..+ ...++++.++.+.++ .++..+|+..|.
T Consensus 65 ~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap-~e~~~~R~~~R~ 117 (166)
T PRK06762 65 LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLS-FEETLRRHSTRP 117 (166)
T ss_pred HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCC-HHHHHHHHhccc
Confidence 3379999999999888888888888 555555555555555 566677766564
No 56
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.31 E-value=1.7e-11 Score=116.97 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=76.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhC--CCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG--VNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g--~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L 430 (699)
||+|+|+|||||||+|+.|++.+++.. ++.|++++.... ......+.....+.....+...+. ..+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~-----i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l 68 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPF-----IDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALL-------AKL 68 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEE-----EeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHH-------HHH
Confidence 589999999999999999999876544 444555542100 001112222223332333322222 122
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 431 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 431 ~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
...|..+|+|+++..+..|+.+..+. ++..+.+|.+.|+ ++++++|+..|..
T Consensus 69 ~~~~~~vVid~~~~~~~~r~~~~~~~-~~~~~~~v~l~~~-~~~~~~R~~~R~~ 120 (150)
T cd02021 69 ASAGEGVVVACSALKRIYRDILRGGA-ANPRVRFVHLDGP-REVLAERLAARKG 120 (150)
T ss_pred HhCCCCEEEEeccccHHHHHHHHhcC-CCCCEEEEEEECC-HHHHHHHHHhccc
Confidence 23588899999999999998888876 5666767777776 7888999988853
No 57
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.30 E-value=1.9e-11 Score=126.91 Aligned_cols=115 Identities=21% Similarity=0.131 Sum_probs=78.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~ 432 (699)
||+|+|+|||||||+|++|+++|...+.++.+++.|.+|+.... +....+.. ++.....++.-+.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~-------~~~~~e~~-------~~~~~~~~i~~~l~ 66 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV-------WKEKYEEF-------IRDSTLYLIKTALK 66 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH-------hhHHhHHH-------HHHHHHHHHHHHHh
Confidence 58999999999999999999999988888888888877763310 11111111 11111111112223
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHh
Q 005388 433 GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLK 482 (699)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r 482 (699)
.|..||+|++|..+..|..+.++ ...++++..|.+.|+ .+++.+|...|
T Consensus 67 ~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p-~e~~~~Rn~~R 116 (249)
T TIGR03574 67 NKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAP-LDTLLRRNIER 116 (249)
T ss_pred CCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCC-HHHHHHHHHhC
Confidence 58899999999999999988887 566777777777676 45555665544
No 58
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=99.29 E-value=1.3e-11 Score=116.53 Aligned_cols=64 Identities=36% Similarity=0.542 Sum_probs=56.6
Q ss_pred ceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh
Q 005388 561 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI 626 (699)
Q Consensus 561 ~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i 626 (699)
+|+|||||++.++..+++.+ |.+||+.|++||+.++++|.+. ...++.|||||+.||+|||+++
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~l~~~l~~~--~~~~~~v~sSp~~R~~~Ta~~~ 66 (153)
T cd07040 1 VLYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRER--YIKFDRIYSSPLKRAIQTAEII 66 (153)
T ss_pred CEEEEeCCCCccccCCCccCCCCCCcCHHHHHHHHHHHHHHHHh--CCCCCEEEECChHHHHHHHHHH
Confidence 48999999999987766444 9999999999999999998765 2478999999999999999998
No 59
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=99.28 E-value=7.5e-12 Score=121.07 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=55.2
Q ss_pred cceEEecccccccccCCcccCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh
Q 005388 560 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI 626 (699)
Q Consensus 560 ~~I~LVRHGeS~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i 626 (699)
|+|||||||++.++.. -..|.+||+.|++||+.++++|.+. +..++.|||||+.||+|||+.+
T Consensus 1 m~l~LvRHg~a~~~~~--~d~dr~Lt~~G~~qa~~~~~~l~~~--~~~~d~i~sSp~~Ra~qTa~~l 63 (152)
T TIGR00249 1 MQLFIMRHGDAALDAA--SDSVRPLTTNGCDESRLVAQWLKGQ--GVEIERILVSPFVRAEQTAEIV 63 (152)
T ss_pred CEEEEEeCCCcccccC--CCCCCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEECCcHHHHHHHHHH
Confidence 5799999999998764 2338899999999999999998754 4578999999999999999998
No 60
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.28 E-value=4.1e-11 Score=120.36 Aligned_cols=119 Identities=25% Similarity=0.279 Sum_probs=90.6
Q ss_pred CCCCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 005388 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (699)
Q Consensus 346 ~~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~d 425 (699)
+.+++|.+|+|+|+|||||||+|+.|++.|...+..+..++.|++|+.... ..+|...++.+.++++..+|..+++
T Consensus 19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~---~~~~~~~~~~~~~~~l~~~a~~~~~- 94 (198)
T PRK03846 19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCS---DLGFSDADRKENIRRVGEVAKLMVD- 94 (198)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhh---cCCcCcccHHHHHHHHHHHHHHHhh-
Confidence 445688999999999999999999999999877888888988888764332 3456666677777777666666544
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHH
Q 005388 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERN 478 (699)
Q Consensus 426 l~~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rr 478 (699)
.|.+||.+..++.++.|+.++++ .+.+ +++|.+.|+ .+++.+|
T Consensus 95 -------~G~~VI~~~~~~~~~~R~~~r~~l~~~~--~i~V~L~~~-~e~~~~R 138 (198)
T PRK03846 95 -------AGLVVLTAFISPHRAERQMVRERLGEGE--FIEVFVDTP-LAICEAR 138 (198)
T ss_pred -------CCCEEEEEeCCCCHHHHHHHHHHcccCC--EEEEEEcCC-HHHHHhc
Confidence 79999999988999999999998 4444 333444455 5666666
No 61
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.28 E-value=1.3e-11 Score=121.29 Aligned_cols=140 Identities=18% Similarity=0.221 Sum_probs=97.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~ 432 (699)
=|+|+|+||+||||++++||+.|+...+++|.+ -....+... ..+|....+..++.++..+...+- .
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~-----Ie~~~g~sI-~eIF~~~GE~~FR~~E~~vl~~l~------~- 70 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPFIDTDQE-----IEKRTGMSI-AEIFEEEGEEGFRRLETEVLKELL------E- 70 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCcccchHH-----HHHHHCcCH-HHHHHHHhHHHHHHHHHHHHHHHh------h-
Confidence 389999999999999999999999888777665 444455333 467888888888888765544222 1
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCCh-HHHHHHHHHHHHhhhh
Q 005388 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNRLANYEK 511 (699)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~-e~al~d~~~Ri~~y~~ 511 (699)
.+..||. |..-.-..+..+.+.+....++||++ +.+++.+|+... ..+|.+.+. ++ +.+.+.|.+|...|++
T Consensus 71 ~~~~Via--TGGG~v~~~enr~~l~~~g~vv~L~~---~~e~l~~Rl~~~-~~RPll~~~-~~~~~l~~L~~~R~~~Y~e 143 (172)
T COG0703 71 EDNAVIA--TGGGAVLSEENRNLLKKRGIVVYLDA---PFETLYERLQRD-RKRPLLQTE-DPREELEELLEERQPLYRE 143 (172)
T ss_pred cCCeEEE--CCCccccCHHHHHHHHhCCeEEEEeC---CHHHHHHHhccc-cCCCcccCC-ChHHHHHHHHHHHHHHHHH
Confidence 2334432 22222222333333222347888887 899999999843 458999988 88 6676778999999986
Q ss_pred h
Q 005388 512 V 512 (699)
Q Consensus 512 ~ 512 (699)
.
T Consensus 144 ~ 144 (172)
T COG0703 144 V 144 (172)
T ss_pred h
Confidence 4
No 62
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.27 E-value=6.6e-11 Score=116.07 Aligned_cols=115 Identities=20% Similarity=0.212 Sum_probs=82.2
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
+.+.+|+|+|+|||||||+|+.|++.|...+.++.+++.|.+|+... ....+..+++...++.+..++..+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~---~~~~~~~~~r~~~~~~~~~~a~~~~----- 73 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLS---KGLGFSKEDRDTNIRRIGFVANLLT----- 73 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHh---cCCCCChhhHHHHHHHHHHHHHHHH-----
Confidence 35679999999999999999999999987777788888888876432 2234545556666666555555433
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHH
Q 005388 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERN 478 (699)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rr 478 (699)
..|.+||+|++++.+..|+.++.+.. .+ .+|.+.|+ .+++.+|
T Consensus 74 ---~~g~~vi~~~~~~~~~~~~~l~~~~~-~~--~~v~l~~~-~e~~~~R 116 (175)
T PRK00889 74 ---RHGVIVLVSAISPYRETREEVRANIG-NF--LEVFVDAP-LEVCEQR 116 (175)
T ss_pred ---hCCCEEEEecCCCCHHHHHHHHhhcC-Ce--EEEEEcCC-HHHHHHh
Confidence 37999999999988888887777642 34 44445556 5555555
No 63
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=99.27 E-value=1e-11 Score=121.11 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=54.3
Q ss_pred cceEEecccccccccCCcccCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh
Q 005388 560 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI 626 (699)
Q Consensus 560 ~~I~LVRHGeS~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i 626 (699)
|+|||||||++.++.. ...|.|||+.|++||+.++++|... +..++.|||||+.||+|||+++
T Consensus 1 m~l~lvRHg~a~~~~~--~d~~rpLt~~G~~qa~~~~~~l~~~--~~~~d~i~sSp~~Ra~qTa~~l 63 (159)
T PRK10848 1 MQVFIMRHGDAALDAA--SDSVRPLTTCGCDESRLMANWLKGQ--KVDIERVLVSPYLRAEQTLEVV 63 (159)
T ss_pred CEEEEEeCCCCCCCCC--CCcCCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEECCHHHHHHHHHHH
Confidence 5799999999998752 1226799999999999999998754 4578999999999999999998
No 64
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=99.27 E-value=9.7e-12 Score=121.27 Aligned_cols=66 Identities=21% Similarity=0.213 Sum_probs=60.2
Q ss_pred CcceEEecccccccccCCcccCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh
Q 005388 559 PRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI 626 (699)
Q Consensus 559 ~~~I~LVRHGeS~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i 626 (699)
||+|||+|||++.+...+.-..|.+||+.|+++++++|++|+++ ...+|.|+|||..||+|||+.+
T Consensus 1 m~~L~LmRHgkA~~~~~~~~D~dR~Lt~~G~~ea~~~a~~L~~~--~~~~D~VL~Spa~Ra~QTae~v 66 (163)
T COG2062 1 MMRLYLMRHGKAEWAAPGIADFDRPLTERGRKEAELVAAWLAGQ--GVEPDLVLVSPAVRARQTAEIV 66 (163)
T ss_pred CceEEEeecccccccCCCCCCccCcCCHHHHHHHHHHHHHHHhc--CCCCCEEEeChhHHHHHHHHHH
Confidence 58999999999999886644558999999999999999999987 6689999999999999999998
No 65
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.26 E-value=5.9e-11 Score=116.73 Aligned_cols=118 Identities=18% Similarity=0.115 Sum_probs=76.2
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCC----CCCc------C-CCCHHHHHHHHHHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS----ADFF------R-ADNPEGMEARNEVAA 420 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~----~~f~------~-~~~~~~~~~~~~vA~ 420 (699)
.+|+|+|+|||||||+|+.|++.+.... -.++.|+|+......... ..+. . +.....|..+...+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 79 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPW---LHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVA 79 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCc---cccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHH
Confidence 4899999999999999999999875321 234556666543211110 0011 1 112234454555555
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCC-CHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 421 LAMEDMISWMHEGGQVGIFDATNS-SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 421 ~~l~dl~~~L~~~G~vVIlDAtn~-~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
.+++ .|.+||+|+++. ....|+.+..+. +.++++|++.|++ +++.+|+..|.
T Consensus 80 ~~l~--------~G~~VIvD~~~~~~~~~r~~~~~~~--~~~~~~v~l~~~~-~~l~~R~~~R~ 132 (175)
T cd00227 80 AMAR--------AGANVIADDVFLGRAALQDCWRSFV--GLDVLWVGVRCPG-EVAEGRETARG 132 (175)
T ss_pred HHHh--------CCCcEEEeeeccCCHHHHHHHHHhc--CCCEEEEEEECCH-HHHHHHHHhcC
Confidence 4444 799999999998 667777777663 3567888888885 67777777664
No 66
>KOG4754 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=1.8e-11 Score=122.10 Aligned_cols=138 Identities=19% Similarity=0.155 Sum_probs=100.8
Q ss_pred CcceEEecccccccccCCcccC---------CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhhc--
Q 005388 559 PRPILLTRHGESRDNVRGRIGG---------DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-- 627 (699)
Q Consensus 559 ~~~I~LVRHGeS~~N~~~~~~G---------D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i~-- 627 (699)
-++||||||||..+|+.+.-.. |+.||+.|++|+..++..+...--...++.|++||++||+||+...+
T Consensus 14 ~KtiyLvRHgQg~HNV~g~~~h~ay~s~~~fD~~LTplG~~Qv~~l~~~~~A~qL~~~ieliv~SPMrRtLqT~v~~f~~ 93 (248)
T KOG4754|consen 14 CKTIYLVRHGQGIHNVAGEEDHKAYWSEDYFDPHLTPLGWKQVDNLRKHLMAKQLPNKIELIVVSPMRRTLQTMVIAFGG 93 (248)
T ss_pred ceEEEEEeccccccccCcccchhhhhhhhccccccCHHHHHHHHHHhhhhhhhhcCCceeEEEechHHHHHHHHHHHhcc
Confidence 4789999999999998754211 89999999999999998776542233489999999999999999862
Q ss_pred --------CCCccccccc----cc-cccCcCC-CCCHHHHHHhCHHH-HHHHHhC-CCCCCCCCCCCHHHHHHHHHHHHH
Q 005388 628 --------GFPKIQWRAL----DE-INAGVCD-GMTYEEIKKNMPEE-YEARKKD-KLRYRYPRGESYLDVIQRFAACPC 691 (699)
Q Consensus 628 --------g~~v~~~~~L----~E-~~~G~~e-G~t~~ei~~~~P~~-~~~~~~d-~~~~~~PgGES~~dv~~Rv~~~L~ 691 (699)
..++.+.+.+ +| +.--.|+ +.+..+.++.||.. |.....+ ...+.+--.|++.+.+.|-..+++
T Consensus 94 ~~~e~g~~~~p~~vsp~~i~~~rE~lG~hpCD~r~~v~~~~~lfp~~DFs~~~~dv~~~~~pdy~ed~e~~a~r~re~~~ 173 (248)
T KOG4754|consen 94 YLAEDGEDPAPVKVSPPFIAVCRETLGDHPCDRRSSVTDLMKLFPAYDFSLCETDVDPLKKPDYREDDEESAARSREFLE 173 (248)
T ss_pred eeccCCCcCCceeecchHHHHHHHHhCCCcccccchhHHHHhhcccccceeeccCcchhccCcchhhHHHHHHhHHHHHH
Confidence 1345555666 88 6555666 55788888888842 2222222 112232345999999999999999
Q ss_pred HHHHH
Q 005388 692 SIWCL 696 (699)
Q Consensus 692 ~L~~e 696 (699)
++..+
T Consensus 174 ~l~~r 178 (248)
T KOG4754|consen 174 WLAKR 178 (248)
T ss_pred HHHhC
Confidence 98764
No 67
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.24 E-value=3.1e-11 Score=120.56 Aligned_cols=136 Identities=21% Similarity=0.152 Sum_probs=88.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~ 432 (699)
||+++|+|||||||+|+.|++.|...++++..+ ..||++...- .+++.-..+...+...+-+..++...+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l-~kdy~~~i~~----DEslpi~ke~yres~~ks~~rlldSal----- 72 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHL-EKDYLRGILW----DESLPILKEVYRESFLKSVERLLDSAL----- 72 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhcccc-chhhhhheec----ccccchHHHHHHHHHHHHHHHHHHHHh-----
Confidence 799999999999999999999999888777655 3457553211 112221122222222222323444332
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHH
Q 005388 433 GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (699)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri~ 507 (699)
....||+|++|....+|.++... .+....+..|.+.|+...++++| ..|.. |-+++.++..+.|++
T Consensus 73 kn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN-~erge--------pip~Evl~qly~RfE 139 (261)
T COG4088 73 KNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRN-RERGE--------PIPEEVLRQLYDRFE 139 (261)
T ss_pred cceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhh-ccCCC--------CCCHHHHHHHHHhhc
Confidence 27799999999999999888887 66666666777778865666666 33321 246777777666655
No 68
>COG4639 Predicted kinase [General function prediction only]
Probab=99.23 E-value=7.3e-11 Score=113.36 Aligned_cols=112 Identities=21% Similarity=0.207 Sum_probs=82.1
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L 430 (699)
+.|++|+|+|||||||+|+..- ...++++.+++|+.+ |...+..-.........+.+.+.+...+.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~-------~~~~~lsld~~r~~l-g~~~~~e~sqk~~~~~~~~l~~~l~qrl~------ 67 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENF-------LQNYVLSLDDLRLLL-GVSASKENSQKNDELVWDILYKQLEQRLR------ 67 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhC-------CCcceecHHHHHHHh-hhchhhhhccccHHHHHHHHHHHHHHHHH------
Confidence 4689999999999999997643 566789999998844 32222222222223344555555555444
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHH
Q 005388 431 HEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERN 478 (699)
Q Consensus 431 ~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rr 478 (699)
.|...|+||||..++.|+.+.++ ..+++..++|++..+...++.||
T Consensus 68 --~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRN 114 (168)
T COG4639 68 --RGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARN 114 (168)
T ss_pred --cCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHh
Confidence 69999999999999999999999 88999999999988855555555
No 69
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.22 E-value=5.1e-11 Score=139.51 Aligned_cols=120 Identities=20% Similarity=0.244 Sum_probs=92.8
Q ss_pred CCCCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 005388 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (699)
Q Consensus 346 ~~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~d 425 (699)
+.+.+|.+|+|+|+|||||||+|++|+++|.+.+..+..++.|++|+... ....|.++++...++.+..+|...++
T Consensus 455 ~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~---~~~~~~~~~r~~~~~~l~~~a~~~~~- 530 (632)
T PRK05506 455 RKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLN---RDLGFSDADRVENIRRVAEVARLMAD- 530 (632)
T ss_pred HhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccC---CCCCCCHHHHHHHHHHHHHHHHHHHh-
Confidence 34557899999999999999999999999998888889999999987443 33456666677777777776666554
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHH
Q 005388 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERN 478 (699)
Q Consensus 426 l~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rr 478 (699)
+|.+||+|++++.+..|+.++++.... .+.++.+.|+ .+.+.+|
T Consensus 531 -------~G~~Vivda~~~~~~~R~~~r~l~~~~-~~~~v~L~~~-~e~~~~R 574 (632)
T PRK05506 531 -------AGLIVLVSFISPFREERELARALHGEG-EFVEVFVDTP-LEVCEAR 574 (632)
T ss_pred -------CCCEEEEECCCCCHHHHHHHHHhcccC-CeEEEEECCC-HHHHHhh
Confidence 899999999999999999999884322 3444555455 6666666
No 70
>PRK06193 hypothetical protein; Provisional
Probab=99.22 E-value=4.9e-11 Score=120.84 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=58.9
Q ss_pred CCcceEEecccccccccCCcccC-------CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhhc
Q 005388 558 TPRPILLTRHGESRDNVRGRIGG-------DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA 627 (699)
Q Consensus 558 ~~~~I~LVRHGeS~~N~~~~~~G-------D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i~ 627 (699)
+...|||||||++++|..+.+.| |.+||++|++||+.++++|.+. +..++.|||||+.||+|||+.+.
T Consensus 41 ~~~~L~LvRHGet~~n~~~~~~gd~d~~~~~rpLt~~G~~qA~~l~~~L~~~--~~~~d~V~sSpl~Ra~qTA~il~ 115 (206)
T PRK06193 41 KGGYVIYFRHAATDRSQADQDTSDMDDCSTQRNLSEEGREQARAIGEAFRAL--AIPVGKVISSPYCRAWETAQLAF 115 (206)
T ss_pred cCCEEEEEeCccCCCCccCCcccccccCcCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHh
Confidence 34789999999999887766655 3599999999999999998754 56789999999999999999884
No 71
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=99.20 E-value=2.6e-11 Score=122.06 Aligned_cols=86 Identities=20% Similarity=0.226 Sum_probs=65.2
Q ss_pred CCCcceEEecccccccccCCc-ccCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhhc-CCCcccc
Q 005388 557 LTPRPILLTRHGESRDNVRGR-IGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-GFPKIQW 634 (699)
Q Consensus 557 ~~~~~I~LVRHGeS~~N~~~~-~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i~-g~~v~~~ 634 (699)
...++||||||||+.+...+. ...+.|||+.|++||+.++++|.+. ...+.|||||+.||+|||+++. +.++..+
T Consensus 52 ~~~~~L~LiRHGet~~~~~~~~~sD~RpLTerG~~qA~~lg~~L~~~---~~~d~I~sSpa~Ra~qTAe~ia~~~~v~~~ 128 (201)
T PRK15416 52 KQHPVVVLFRHAERCDRSDNQCLSDKTGITVKGTQDARELGKAFSAD---IPDYDLYSSNTVRTIQSATWFSAGKKLTVD 128 (201)
T ss_pred cCCCEEEEEeCccccCccCCCCCCCCCCCCHHHHHHHHHHHHHHhCC---CCCCEEEECCCHHHHHHHHHHhcCCCcEec
Confidence 345789999999983222121 1113689999999999999988643 2337999999999999999993 5677788
Q ss_pred ccccccccCcC
Q 005388 635 RALDEINAGVC 645 (699)
Q Consensus 635 ~~L~E~~~G~~ 645 (699)
+.|.|.+.+.+
T Consensus 129 ~~Lye~~~~~~ 139 (201)
T PRK15416 129 KRLSDCGNGIY 139 (201)
T ss_pred HHHhhcCchhH
Confidence 89999887643
No 72
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.17 E-value=3.3e-10 Score=110.76 Aligned_cols=141 Identities=15% Similarity=0.203 Sum_probs=90.3
Q ss_pred EccCCCChhHHHHHHHHHHhhcCCCceEeeh-hhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 005388 357 VGLPARGKTFTAAKLTRYLRWLGHDTKHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQ 435 (699)
Q Consensus 357 vGLPGSGKSTlAr~La~~L~~~gi~tdv~~~-gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~~G~ 435 (699)
.|+|||||||+++.|+..++...++.|++.. ..+|+...| ..+.+.........+..++... +..+|.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 69 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASG----EPLNDDDRKPWLQALNDAAFAM-------QRTNKV 69 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCC----CCCChhhHHHHHHHHHHHHHHH-------HHcCCc
Confidence 4999999999999999999876666666532 112332222 1222222222333333333321 223466
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHhhhhhccC
Q 005388 436 VGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKVYEP 515 (699)
Q Consensus 436 vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri~~y~~~yEp 515 (699)
.||+ +++..+..|+.+++ .++++.||.|.|+ .+++++|++.|.. ++ . +++.+ ..|...+||
T Consensus 70 ~viv-~s~~~~~~r~~~~~---~~~~~~~v~l~a~-~~~l~~Rl~~R~~---~~--a-~~~vl--------~~Q~~~~ep 130 (163)
T PRK11545 70 SLIV-CSALKKHYRDLLRE---GNPNLSFIYLKGD-FDVIESRLKARKG---HF--F-KTQML--------VTQFETLQE 130 (163)
T ss_pred eEEE-EecchHHHHHHHHc---cCCCEEEEEEECC-HHHHHHHHHhccC---CC--C-CHHHH--------HHHHHHcCC
Confidence 6666 89998888877765 5667788888777 7999999998864 34 3 56665 566677898
Q ss_pred CCCC-CceEEeec
Q 005388 516 VDEG-SYIKMIDM 527 (699)
Q Consensus 516 l~e~-~yik~in~ 527 (699)
+++. ..+..||.
T Consensus 131 ~~~~e~~~~~id~ 143 (163)
T PRK11545 131 PGADETDVLVVDI 143 (163)
T ss_pred CCCCCCCEEEEeC
Confidence 8754 55666665
No 73
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.17 E-value=3.3e-10 Score=109.59 Aligned_cols=114 Identities=19% Similarity=0.284 Sum_probs=68.6
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhh-HHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gd-yRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~ 432 (699)
|+|+|+|||||||+|+.|++.+++..++.|.+.... .++...+ ..+........+..+.+.+... +.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-------l~- 68 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAG----IPLNDDDRWPWLQNLNDASTAA-------AA- 68 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcC----CCCChhhHHHHHHHHHHHHHHH-------Hh-
Confidence 579999999999999999999864443333331110 1222222 1222222333333333333332 22
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
.|..+|+|+++..+..|+.++ ..+..+.++.+.|+ .+++.+|++.|.
T Consensus 69 ~~~~~Vi~~t~~~~~~r~~~~---~~~~~~~~i~l~~~-~e~~~~R~~~R~ 115 (163)
T TIGR01313 69 KNKVGIITCSALKRHYRDILR---EAEPNLHFIYLSGD-KDVILERMKARK 115 (163)
T ss_pred cCCCEEEEecccHHHHHHHHH---hcCCCEEEEEEeCC-HHHHHHHHHhcc
Confidence 466679999999888887776 33445555555555 788899998774
No 74
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.17 E-value=1.5e-10 Score=110.11 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=83.3
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEG 433 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~~ 433 (699)
|+++|+|||||||+|+.|+++|++..++.+ ++.+...+... ..++....+..+..++.- ++..+...
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d-----~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~-------~~~~~~~~ 68 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD-----ELIEQRAGMSI-PEIFAEEGEEGFRELERE-------VLLLLLTK 68 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch-----HHHHHHcCCCH-HHHHHHHCHHHHHHHHHH-------HHHHHhcc
Confidence 789999999999999999999887665544 44554444322 233333344433333221 11113334
Q ss_pred CeEEEEeCCCC--CHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHhhhh
Q 005388 434 GQVGIFDATNS--SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEK 511 (699)
Q Consensus 434 G~vVIlDAtn~--~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri~~y~~ 511 (699)
+..||..+... .... +.....+..++||++ +.+++.+|+..|. .+|.++.. +.+.+.+.|.+|.+.|++
T Consensus 69 ~~~vi~~g~~~i~~~~~----~~~~~~~~~~i~l~~---~~e~~~~R~~~r~-~r~~~~~~-~~~~~~~~~~~r~~~Y~~ 139 (154)
T cd00464 69 ENAVIATGGGAVLREEN----RRLLLENGIVVWLDA---SPEELLERLARDK-TRPLLQDE-DPERLRELLEEREPLYRE 139 (154)
T ss_pred CCcEEECCCCccCcHHH----HHHHHcCCeEEEEeC---CHHHHHHHhccCC-CCCCCCCC-CHHHHHHHHHHHHHHHHH
Confidence 55555433221 2222 223223556778876 6899999998775 47777766 566777778888888876
Q ss_pred h
Q 005388 512 V 512 (699)
Q Consensus 512 ~ 512 (699)
.
T Consensus 140 ~ 140 (154)
T cd00464 140 V 140 (154)
T ss_pred h
Confidence 5
No 75
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.14 E-value=4.1e-10 Score=110.56 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=76.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
+|.+|+|+|+|||||||+|+.|+++|...+..+.+++.+.+|+... ..+|......+...+...++..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~----~~~~~~~~~~~~~~~~~~l~~~-------- 73 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILG----HYGYDKQSRIEMALKRAKLAKF-------- 73 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcC----CCCCCHHHHHHHHHHHHHHHHH--------
Confidence 6789999999999999999999999987777777888888877431 1122221222222222222222
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHH
Q 005388 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIR 480 (699)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~ 480 (699)
+...|.+||+|+++..++.++.++.+.. .+.++|+.+ +++++.+|+.
T Consensus 74 l~~~g~~VI~~~~~~~~~~~~~~~~~~~-~~~~v~l~~---~~e~~~~R~~ 120 (176)
T PRK05541 74 LADQGMIVIVTTISMFDEIYAYNRKHLP-NYFEVYLKC---DMEELIRRDQ 120 (176)
T ss_pred HHhCCCEEEEEeCCcHHHHHHHHHhhcC-CeEEEEEeC---CHHHHHHhch
Confidence 3347999999999987777777766633 233455554 4778788764
No 76
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.09 E-value=6.9e-10 Score=120.41 Aligned_cols=128 Identities=17% Similarity=0.132 Sum_probs=82.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHh-hcCCCceEeehhhHHH-----HhhCCCCCCCCcCCCCHHHHHHHHHHHH------
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRR-----LKHGVNQSADFFRADNPEGMEARNEVAA------ 420 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~-~~gi~tdv~~~gdyRr-----~~~g~~~~~~f~~~~~~~~~~~~~~vA~------ 420 (699)
+++|+|+||+||||+++.|++.|. ..|+++.+++.||+-. ...+...+. .|...+....+.++..+.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~-~~k~~R~~i~~~le~~v~a~~~g~ 79 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPS-QWKQFRQELLKYLEHFLVAVINGS 79 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHH-HHHHHHHHHHHHHHHHHHHhcCcc
Confidence 478999999999999999999997 6899999999988741 111111111 111112222222222110
Q ss_pred ----------HHHHHHHHHHhcC------------------------CeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEE
Q 005388 421 ----------LAMEDMISWMHEG------------------------GQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFL 465 (699)
Q Consensus 421 ----------~~l~dl~~~L~~~------------------------G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifI 465 (699)
.+..+.+..|+++ +..+|+|++|..+..|..+..+ ...+..+..|
T Consensus 80 ~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V 159 (340)
T TIGR03575 80 ELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQL 159 (340)
T ss_pred cccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 1111112333322 4579999999999999999999 6677778888
Q ss_pred EEEeCCHHHHHHHHHHh
Q 005388 466 ETICNDRDIIERNIRLK 482 (699)
Q Consensus 466 E~~c~d~e~i~rrI~~r 482 (699)
.+.|+ .+++.+|...|
T Consensus 160 ~ld~p-le~~l~RN~~R 175 (340)
T TIGR03575 160 FLDCP-VESCLLRNKQR 175 (340)
T ss_pred EEeCC-HHHHHHHHhcC
Confidence 88888 45555665555
No 77
>PRK13948 shikimate kinase; Provisional
Probab=99.09 E-value=5.8e-10 Score=111.21 Aligned_cols=139 Identities=17% Similarity=0.111 Sum_probs=92.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHH-HHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAA-LAMEDMIS 428 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~-~~l~dl~~ 428 (699)
.+..|+|+|+|||||||+++.|++.|++..+++|. +++...|.... ++|....+..++.++..+. .++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~-----~ie~~~g~si~-~if~~~Ge~~fR~~E~~~l~~l~~---- 78 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDR-----YIERVTGKSIP-EIFRHLGEAYFRRCEAEVVRRLTR---- 78 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCH-----HHHHHHhCCHH-HHHHHhCHHHHHHHHHHHHHHHHh----
Confidence 46789999999999999999999998876655554 46666665433 5566677777776654332 2222
Q ss_pred HHhcCCeEEEE--eCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHH
Q 005388 429 WMHEGGQVGIF--DATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (699)
Q Consensus 429 ~L~~~G~vVIl--DAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri 506 (699)
.+..||. .++...++.|+.++ +. ..++||.+ +++.+.+|+.. ..+|...+....+.+.+.|.+|.
T Consensus 79 ----~~~~VIa~GgG~v~~~~n~~~l~---~~-g~vV~L~~---~~e~l~~Rl~~--~~RPll~~~~~~~~l~~l~~~R~ 145 (182)
T PRK13948 79 ----LDYAVISLGGGTFMHEENRRKLL---SR-GPVVVLWA---SPETIYERTRP--GDRPLLQVEDPLGRIRTLLNERE 145 (182)
T ss_pred ----cCCeEEECCCcEEcCHHHHHHHH---cC-CeEEEEEC---CHHHHHHHhcC--CCCCCCCCCChHHHHHHHHHHHH
Confidence 3444443 24455666666544 33 46778875 68999999953 34787765412455666678888
Q ss_pred Hhhhh
Q 005388 507 ANYEK 511 (699)
Q Consensus 507 ~~y~~ 511 (699)
+.|++
T Consensus 146 ~~Y~~ 150 (182)
T PRK13948 146 PVYRQ 150 (182)
T ss_pred HHHHh
Confidence 88854
No 78
>PRK00625 shikimate kinase; Provisional
Probab=99.09 E-value=4.3e-10 Score=111.23 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=82.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCC---CCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGV---NQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~---~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
.|+|+|+|||||||+|+.|+++|++..+++ |++-+...+. .....+|....++.++..+..+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~-----D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~------- 69 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDT-----DDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTS------- 69 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEh-----hHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHH-------
Confidence 489999999999999999999987665444 4444444443 1233456666777777666544332
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHhh
Q 005388 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 509 (699)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri~~y 509 (699)
+.. ...||..+ .......+.+..+ +.+..++|+++ +.+++.+|+..|.. .++.. ..+...+.|.+|.+.|
T Consensus 70 l~~-~~~VIs~G-Gg~~~~~e~~~~l-~~~~~Vv~L~~---~~e~l~~Rl~~R~~-~~~~~---~~~~~~~ll~~R~~~Y 139 (173)
T PRK00625 70 LPV-IPSIVALG-GGTLMIEPSYAHI-RNRGLLVLLSL---PIATIYQRLQKRGL-PERLK---HAPSLEEILSQRIDRM 139 (173)
T ss_pred hcc-CCeEEECC-CCccCCHHHHHHH-hcCCEEEEEEC---CHHHHHHHHhcCCC-CcccC---cHHHHHHHHHHHHHHH
Confidence 222 33444322 2222222222223 33456888887 68999999986532 11121 3456666688999998
Q ss_pred hh
Q 005388 510 EK 511 (699)
Q Consensus 510 ~~ 511 (699)
++
T Consensus 140 ~~ 141 (173)
T PRK00625 140 RS 141 (173)
T ss_pred HH
Confidence 76
No 79
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.09 E-value=2.8e-09 Score=107.60 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=79.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCC-----C------CcCCCCH-H---HHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-----D------FFRADNP-E---GMEA 414 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~-----~------f~~~~~~-~---~~~~ 414 (699)
.+++|+++|+||+||||+|+.|++.++. . .++..|-.|+...+..... . ++.+... . +|..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~---~-~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~ 77 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAI---D-IVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLD 77 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC---e-EEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHH
Confidence 4679999999999999999999998643 2 2444444566544321111 1 1222221 1 1222
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 415 RNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 415 ~~~vA~~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
..+.....+..+...+..+|..+|+|+++..+..++... ..+ +.++.+.+++++++++|+..|..
T Consensus 78 q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~---~~~--v~~i~l~v~d~e~lr~Rl~~R~~ 142 (197)
T PRK12339 78 QARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENR---TNN--IRAFYLYIRDAELHRSRLADRIN 142 (197)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHH---hcC--eEEEEEEeCCHHHHHHHHHHHhh
Confidence 223333445555555555899999999999998875433 223 34555667789999999998865
No 80
>PLN02950 4-alpha-glucanotransferase
Probab=99.06 E-value=4.7e-10 Score=134.93 Aligned_cols=86 Identities=24% Similarity=0.292 Sum_probs=74.4
Q ss_pred EEEEEEecccC-CCcEEEEecCCCccCCCCccccccccccCCC---ceEEEEecCCCCCceeeEEEEecCCCCCceeecc
Q 005388 33 VSLKMVNIKLK-GDLIPHVYGSVPLVGSWDSSKALAMGRESAS---MWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEE 108 (699)
Q Consensus 33 v~lkv~aP~l~-~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~---~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~wE~ 108 (699)
|+|+.++|... .++.++|+||.+.||+|+++||++|+.++.+ .|+++++++. ..++||||++++.+ ...+.||.
T Consensus 9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~-~~~ieYKYv~v~~~-g~vi~WE~ 86 (909)
T PLN02950 9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPE-GFSCEYSYYVVDDN-KNVLRWEA 86 (909)
T ss_pred EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecC-CCeEEEEEEEEeCC-Cceeeeec
Confidence 66777788776 6999999999999999999999999877544 8999999998 56799999999865 56688999
Q ss_pred CCCccccCCCCC
Q 005388 109 GPNRLLTGGALQ 120 (699)
Q Consensus 109 g~NR~l~~~~~~ 120 (699)
|+||.+..|...
T Consensus 87 g~NR~l~lp~~~ 98 (909)
T PLN02950 87 GKKRKLVLPEGL 98 (909)
T ss_pred CCCeeEECCccc
Confidence 999999998654
No 81
>PRK13946 shikimate kinase; Provisional
Probab=98.98 E-value=3.2e-09 Score=105.54 Aligned_cols=139 Identities=17% Similarity=0.226 Sum_probs=83.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
.+..|+|+|+|||||||+|+.|++.|++..+++|.+ .+...+.... .++...++..++.++. .++..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~-----~~~~~g~~~~-e~~~~~ge~~~~~~e~-------~~l~~ 75 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTE-----IERAARMTIA-EIFAAYGEPEFRDLER-------RVIAR 75 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHH-----HHHHhCCCHH-HHHHHHCHHHHHHHHH-------HHHHH
Confidence 356899999999999999999999998877666654 4444443222 3344444544433321 11222
Q ss_pred HhcCCeEEEEeC--CCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHH-HHHHHH
Q 005388 430 MHEGGQVGIFDA--TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ-DFKNRL 506 (699)
Q Consensus 430 L~~~G~vVIlDA--tn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~-d~~~Ri 506 (699)
+.+.+..||... ++..+..|+.+.. +..++||.+ +.+++.+|+..+.. .|..++. ++.+.++ .+.+|-
T Consensus 76 l~~~~~~Vi~~ggg~~~~~~~r~~l~~----~~~~v~L~a---~~e~~~~Rl~~r~~-rp~~~~~-~~~~~i~~~~~~R~ 146 (184)
T PRK13946 76 LLKGGPLVLATGGGAFMNEETRAAIAE----KGISVWLKA---DLDVLWERVSRRDT-RPLLRTA-DPKETLARLMEERY 146 (184)
T ss_pred HHhcCCeEEECCCCCcCCHHHHHHHHc----CCEEEEEEC---CHHHHHHHhcCCCC-CCcCCCC-ChHHHHHHHHHHHH
Confidence 333466666653 4566666776653 234566665 68889999986643 5655543 3333333 355666
Q ss_pred Hhhh
Q 005388 507 ANYE 510 (699)
Q Consensus 507 ~~y~ 510 (699)
+.|.
T Consensus 147 ~~y~ 150 (184)
T PRK13946 147 PVYA 150 (184)
T ss_pred HHHH
Confidence 6554
No 82
>PRK14532 adenylate kinase; Provisional
Probab=98.98 E-value=2e-09 Score=106.72 Aligned_cols=142 Identities=21% Similarity=0.284 Sum_probs=79.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCC-----CCCcCC---CCHHHHHHHHHHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-----ADFFRA---DNPEGMEARNEVAALAME 424 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~-----~~f~~~---~~~~~~~~~~~vA~~~l~ 424 (699)
-|+|+|.|||||||+|+.|++++++..++ .|++-|........ ..++.. ..+ ++...++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is-----~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~~~~ 69 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS-----TGDMLRAAIASGSELGQRVKGIMDRGELVSD-------EIVIALIE 69 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe-----CcHHHHHHHHcCCHHHHHHHHHHHCCCccCH-------HHHHHHHH
Confidence 48899999999999999999997765544 44433322110000 000000 011 11111121
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhc--cCCCCCCCCChHHHHH
Q 005388 425 DMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQ--QSPDYAEEPDFEAGLQ 500 (699)
Q Consensus 425 dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~v-ifIE~~c~d~e~i~rrI~~r~~--~spD~s~~~d~e~al~ 500 (699)
+...- ...|..+|+|+...+..+++.+.++ ...+..+ +.|.+.|+ ++++.+|+..|.. .++|. -.+
T Consensus 70 ~~~~~-~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~-~~~~~~Rl~~R~~~~~r~dd--------~~~ 139 (188)
T PRK14532 70 ERLPE-AEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVD-DEALIERIVKRFEEQGRPDD--------NPE 139 (188)
T ss_pred HHHhC-cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCcCcCCCCCC--------CHH
Confidence 11111 1246788999999999999988876 4445432 34444455 7888888887642 12221 223
Q ss_pred HHHHHHHhhhhhccCC
Q 005388 501 DFKNRLANYEKVYEPV 516 (699)
Q Consensus 501 d~~~Ri~~y~~~yEpl 516 (699)
.+.+|+..|.+...|+
T Consensus 140 ~~~~Rl~~~~~~~~~i 155 (188)
T PRK14532 140 VFVTRLDAYNAQTAPL 155 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4667777775554443
No 83
>KOG3734 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=98.98 E-value=1.6e-09 Score=113.13 Aligned_cols=137 Identities=26% Similarity=0.211 Sum_probs=98.5
Q ss_pred CCCCcceEEecccccccccCCc------------c------------------cC---CCCCCHHHHHHHHHHHHHHHHH
Q 005388 556 HLTPRPILLTRHGESRDNVRGR------------I------------------GG---DTILSDAGEIYAKKLANFVEKR 602 (699)
Q Consensus 556 ~~~~~~I~LVRHGeS~~N~~~~------------~------------------~G---D~pLTe~G~~QA~~La~~L~~~ 602 (699)
....+.|++|||||..++..+. + .+ |+|||..|..|++.+|+.|...
T Consensus 9 ~~~~~~i~vmRHgERvD~if~~~W~~~~~~~~~~y~~~d~n~p~~l~qr~~~~~~y~~d~pit~~g~~~~~~~gr~l~~a 88 (272)
T KOG3734|consen 9 IDVPRNIFVMRHGERVDNIFGKLWLKTCARPDGKYVPDDMNMPFRLPQRIRSPKGYPIDPPITVSGFIQCKLIGRELLNA 88 (272)
T ss_pred cCCCceEEEEEcccccccccchhhhhhhcCCCCCcCCCCccCCccccccccCcccCccCCCccchhHHHHHHHHHHHHhc
Confidence 3446889999999998743221 1 11 8899999999999999999876
Q ss_pred hccCCCCEEEEcChHHHHHHHhhh---cC----CCccccccccccccCcCCC-----CCHHHHHHhCHHH---HHHHHhC
Q 005388 603 LKSERAASIWTSTLQRTILTASPI---AG----FPKIQWRALDEINAGVCDG-----MTYEEIKKNMPEE---YEARKKD 667 (699)
Q Consensus 603 l~~~~~~~V~sSpL~RA~QTA~~i---~g----~~v~~~~~L~E~~~G~~eG-----~t~~ei~~~~P~~---~~~~~~d 667 (699)
+..++.|||||..||+|||..+ .+ ..+.+++.|-|.-.=.-.+ .+..++....+.. |....
T Consensus 89 --~~~i~~ifcSPs~r~VqTa~~i~~~~g~e~~~~i~vePgL~e~~~~~~~~~~p~~is~~el~~~~~~VD~~y~P~~-- 164 (272)
T KOG3734|consen 89 --GIAIDVIFCSPSLRCVQTAAKIKKGLGIEKKLKIRVEPGLFEPEKWPKDGKFPFFISPDELKFPGFPVDLNYDPVY-- 164 (272)
T ss_pred --CCCcceeecCCchhHHHHHHHHHHhhchhcCeeEEecchhcchhhhcccCCCCCcCCHHHHhccCCCcccccchhh--
Confidence 7789999999999999999998 33 5778888888864322122 2344554432211 11100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 005388 668 KLRYRYPRGESYLDVIQRFAACPCSIWCLCQ 698 (699)
Q Consensus 668 ~~~~~~PgGES~~dv~~Rv~~~L~~L~~ea~ 698 (699)
.+.+-++||++++.+|+..++..|++.+.
T Consensus 165 --~~~~~~~es~e~~~~R~~~~~k~i~~k~~ 193 (272)
T KOG3734|consen 165 --KETPRWGESLEDCNDRIQKVFKAIADKYP 193 (272)
T ss_pred --hhcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 12244789999999999999999998764
No 84
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=98.94 E-value=5.2e-09 Score=105.81 Aligned_cols=139 Identities=17% Similarity=0.243 Sum_probs=87.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCC-ceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHD-TKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 431 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~-tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~ 431 (699)
||++||+|.|||||.|+.|.+.|...+.+ +..+..| ...|......|.+..+++.. +.+ +...++--.
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~d----eslg~~~ns~y~~s~~EK~l--Rg~-----L~S~v~R~L 71 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDD----ESLGIEKNSNYGDSQAEKAL--RGK-----LRSAVDRSL 71 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEech----hhcCCCCcccccccHHHHHH--HHH-----HHHHHHhhc
Confidence 79999999999999999999999988755 3333221 23566665666554444332 222 222222223
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHH
Q 005388 432 EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (699)
Q Consensus 432 ~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri~ 507 (699)
..|.+||+|+-|..+..|.++.++ +........|.+-|+ ++..++.-.. +..|+-.++ + ++.++++..|++
T Consensus 72 sk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp-~e~~r~~Ns~--~~~p~e~gy-~-~e~le~L~~RyE 143 (281)
T KOG3062|consen 72 SKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVP-QELCREWNSE--REDPGEDGY-D-DELLEALVQRYE 143 (281)
T ss_pred ccCcEEEEecccccccceeeeeeehhccceeEEEEEecCC-HHHHHHhccc--CCCCCCCCC-C-HHHHHHHHHHhh
Confidence 359999999999999999999998 444444444555455 4443333333 335555555 3 455566666655
No 85
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.94 E-value=3.3e-08 Score=110.61 Aligned_cols=130 Identities=12% Similarity=0.180 Sum_probs=92.3
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCC--------CC--------------cCC
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA--------DF--------------FRA 406 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~--------~f--------------~~~ 406 (699)
.+|.+|+|+|.||+||||+|.+|+.++++. .+++.|.+|+...+.-... .| ...
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~----~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~ 328 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGIT----RIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEP 328 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCc----EEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCccccccccc
Confidence 369999999999999999999999998763 2555666677554421110 00 001
Q ss_pred CC---HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 407 DN---PEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 407 ~~---~~~~~~~~~vA~~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
.. -.+|+...+.+...++.+++.....|.++|+|++++.+..+. .....+..++.++|.|+|++.+++|+..|.
T Consensus 329 ~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~---~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra 405 (475)
T PRK12337 329 TRAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLR---HPYQAGALVVPMLVTLPDEALHRRRFELRD 405 (475)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHH---HHHhcCCceEEEEEEECCHHHHHHHHHHHh
Confidence 11 123444444555556777777666799999999999998765 224556778899999999999999998887
Q ss_pred cc
Q 005388 484 QQ 485 (699)
Q Consensus 484 ~~ 485 (699)
+.
T Consensus 406 ~~ 407 (475)
T PRK12337 406 RE 407 (475)
T ss_pred hh
Confidence 63
No 86
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.93 E-value=1.8e-09 Score=106.23 Aligned_cols=152 Identities=17% Similarity=0.242 Sum_probs=85.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCCCCCCcCCCCHHHHHHH-------HHHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAME 424 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~~~~~~~~-------~~vA~~~l~ 424 (699)
+|+++|.|||||||+|++|+++++... ++.|++ |+.... ... + .......+ .+++..++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~-----is~~d~lr~~~~~-~~~--~----~~~~~~~~~~g~~~~~~~~~~ll~ 68 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTH-----LSAGDLLRAEIKS-GSE--N----GELIESMIKNGKIVPSEVTVKLLK 68 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeE-----EECChHHHHHHhc-CCh--H----HHHHHHHHHCCCcCCHHHHHHHHH
Confidence 589999999999999999999976544 444333 443221 000 0 00000000 011111221
Q ss_pred HHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHHHc--CCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHH
Q 005388 425 DMISWMHE-GGQVGIFDATNSSRKRRNMLMKMAE--GNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 501 (699)
Q Consensus 425 dl~~~L~~-~G~vVIlDAtn~~~e~R~~l~el~~--~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d 501 (699)
..+.. .+..+|+|+...+.+.+..+.++.. ....+ +|.+.|+ ++++.+|+..|... .+-. +...+.
T Consensus 69 ---~~~~~~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~-~i~l~~~-~~~~~~Rl~~R~~~-~~r~-----dd~~e~ 137 (183)
T TIGR01359 69 ---NAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKF-VLFFDCP-EEVMIKRLLKRGQS-SGRV-----DDNIES 137 (183)
T ss_pred ---HHHhccCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCE-EEEEECC-HHHHHHHHhcCCcc-CCCC-----CCCHHH
Confidence 12222 2678999999999988888887632 22222 3444455 78888888777532 1111 122345
Q ss_pred HHHHHHhhhhhccCCCC----CCceEEeec
Q 005388 502 FKNRLANYEKVYEPVDE----GSYIKMIDM 527 (699)
Q Consensus 502 ~~~Ri~~y~~~yEpl~e----~~yik~in~ 527 (699)
+.+|+..|.+...|+-+ ..++..||.
T Consensus 138 ~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~ 167 (183)
T TIGR01359 138 IKKRFRTYNEQTLPVIEHYENKGKVKEINA 167 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 67888888776666432 234556665
No 87
>PRK13949 shikimate kinase; Provisional
Probab=98.93 E-value=4.3e-09 Score=103.56 Aligned_cols=137 Identities=19% Similarity=0.199 Sum_probs=81.3
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEG 433 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~~ 433 (699)
|+++|+|||||||+|+.|++.|++..+++|.+ -+...+.. -..+|....+..++.++.-+... +...
T Consensus 4 I~liG~~GsGKstl~~~La~~l~~~~id~D~~-----i~~~~~~~-~~~~~~~~g~~~fr~~e~~~l~~-------l~~~ 70 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELGLSFIDLDFF-----IENRFHKT-VGDIFAERGEAVFRELERNMLHE-------VAEF 70 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeecccHH-----HHHHHCcc-HHHHHHHhCHHHHHHHHHHHHHH-------HHhC
Confidence 89999999999999999999998777666644 22222221 12344444555555544433221 2223
Q ss_pred CeEEEEeCCCC--CHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHH----HHHHHHHHHH
Q 005388 434 GQVGIFDATNS--SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEA----GLQDFKNRLA 507 (699)
Q Consensus 434 G~vVIlDAtn~--~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~----al~d~~~Ri~ 507 (699)
...||.++... ..+.++.+ .+.+ .++||.+ +.+.+.+||+.+.+.+|...+. ..+. +.+.|.+|.+
T Consensus 71 ~~~vis~Ggg~~~~~~~~~~l---~~~~-~vi~L~~---~~~~~~~Ri~~~~~~RP~~~~~-~~~~~~~~i~~l~~~R~~ 142 (169)
T PRK13949 71 EDVVISTGGGAPCFFDNMELM---NASG-TTVYLKV---SPEVLFVRLRLAKQQRPLLKGK-SDEELLDFIIEALEKRAP 142 (169)
T ss_pred CCEEEEcCCcccCCHHHHHHH---HhCC-eEEEEEC---CHHHHHHHHhcCCCCCCCCCCC-ChHHHHHHHHHHHHHHHH
Confidence 44555443221 23333333 3334 4678887 7899999998655557877655 4343 3345667777
Q ss_pred hhhh
Q 005388 508 NYEK 511 (699)
Q Consensus 508 ~y~~ 511 (699)
.|++
T Consensus 143 ~Y~~ 146 (169)
T PRK13949 143 FYRQ 146 (169)
T ss_pred HHHh
Confidence 7665
No 88
>PRK14527 adenylate kinase; Provisional
Probab=98.93 E-value=5.9e-09 Score=104.01 Aligned_cols=158 Identities=16% Similarity=0.190 Sum_probs=87.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCCCC-----CCcCCCCHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSA-----DFFRADNPEGMEARNEVAALAM 423 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~-----~f~~~~~~~~~~~~~~vA~~~l 423 (699)
++.+|+++|.|||||||+|+.|+++++...+++ |+. |+.. ...... .+.......--+....++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~-----gd~~r~~~-~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~--- 75 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLST-----GDILRDHV-ARGTELGQRAKPIMEAGDLVPDELILALIR--- 75 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc-----cHHHHHHH-hcCcHHHHHHHHHHHcCCCCcHHHHHHHHH---
Confidence 578999999999999999999999988766555 332 3321 110000 0000000000001111111
Q ss_pred HHHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEE-EEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHH
Q 005388 424 EDMISWMHE-GGQVGIFDATNSSRKRRNMLMKM-AEGNCKII-FLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (699)
Q Consensus 424 ~dl~~~L~~-~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vi-fIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~ 500 (699)
+.+.. .+..+|+|+...+..+++.+..+ ...+..+. +|.+.|+ .+++.+|+..|... ..-.+ | -.+
T Consensus 76 ----~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~-~~~~~~Rl~~R~~~-~~r~d--d---~~~ 144 (191)
T PRK14527 76 ----DELAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVP-DEELIRRIVERARQ-EGRSD--D---NEE 144 (191)
T ss_pred ----HHHhcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcCccc-CCCCC--C---CHH
Confidence 22222 24569999977778888888776 44444432 2344445 78889999877532 11111 1 134
Q ss_pred HHHHHHHhhhhhccCCC----CCCceEEeec
Q 005388 501 DFKNRLANYEKVYEPVD----EGSYIKMIDM 527 (699)
Q Consensus 501 d~~~Ri~~y~~~yEpl~----e~~yik~in~ 527 (699)
-+.+|++.|.+..+|+- +..-++.||.
T Consensus 145 ~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~ 175 (191)
T PRK14527 145 TVRRRQQVYREQTQPLVDYYEARGHLKRVDG 175 (191)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhcCCEEEEEC
Confidence 46778888887777653 2233455554
No 89
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=98.91 E-value=3e-09 Score=113.05 Aligned_cols=110 Identities=26% Similarity=0.335 Sum_probs=95.9
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~ 427 (699)
+-+...||++||+|+||||++-+|.++|...|+.+..+++|.+ ++|++...+|+.++++++++++.++|+...+
T Consensus 47 gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdni---rhgl~knlgfs~edreenirriaevaklfad--- 120 (627)
T KOG4238|consen 47 GFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNI---RHGLNKNLGFSPEDREENIRRIAEVAKLFAD--- 120 (627)
T ss_pred CccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchh---hhhhhhccCCCchhHHHHHHHHHHHHHHHhc---
Confidence 3467889999999999999999999999999999999999776 6788999999999999999999999998444
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeC
Q 005388 428 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICN 470 (699)
Q Consensus 428 ~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~ 470 (699)
+|.+.|-....+..+.|...+++ ...+.+ |+|+.++
T Consensus 121 -----aglvcitsfispf~~dr~~arkihe~~~l~--f~ev~v~ 157 (627)
T KOG4238|consen 121 -----AGLVCITSFISPFAKDRENARKIHESAGLP--FFEVFVD 157 (627)
T ss_pred -----CCceeeehhcChhhhhhhhhhhhhcccCCc--eEEEEec
Confidence 89999999999999999999999 555655 5555444
No 90
>PRK13947 shikimate kinase; Provisional
Probab=98.90 E-value=7.8e-09 Score=100.59 Aligned_cols=136 Identities=18% Similarity=0.177 Sum_probs=77.9
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEG 433 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~~ 433 (699)
|+++|+|||||||+|+.|++.|++..+++|.+ .+...|... ..++....+..++..+..+.. .+...
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~~id~d~~-----~~~~~g~~~-~~~~~~~ge~~~~~~e~~~~~-------~l~~~ 70 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFGFIDTDKE-----IEKMTGMTV-AEIFEKDGEVRFRSEEKLLVK-------KLARL 70 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEECchh-----hhhhcCCcH-HHHHHHhChHHHHHHHHHHHH-------HHhhc
Confidence 89999999999999999999998876555544 554444322 134444555555544432222 12223
Q ss_pred CeEEEEeCC--CCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHhhh
Q 005388 434 GQVGIFDAT--NSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYE 510 (699)
Q Consensus 434 G~vVIlDAt--n~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri~~y~ 510 (699)
+..||..+. -...+.+.. +.+.+ .++||.+ +++.+.+|+..+. .+|........+...+.|.+|.+.|+
T Consensus 71 ~~~vi~~g~g~vl~~~~~~~---l~~~~-~vv~L~~---~~~~l~~Rl~~r~-~rp~~~~~~~~~~i~~~~~~r~~~y~ 141 (171)
T PRK13947 71 KNLVIATGGGVVLNPENVVQ---LRKNG-VVICLKA---RPEVILRRVGKKK-SRPLLMVGDPEERIKELLKEREPFYD 141 (171)
T ss_pred CCeEEECCCCCcCCHHHHHH---HHhCC-EEEEEEC---CHHHHHHHhcCCC-CCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 445542221 122333322 33444 4677766 7899999998663 35655333023444455667766664
No 91
>PRK14531 adenylate kinase; Provisional
Probab=98.90 E-value=2.2e-09 Score=106.52 Aligned_cols=139 Identities=17% Similarity=0.173 Sum_probs=80.4
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCc-eEeehhhHHHHhhCCCCCCCCcCCCCHHHHH--H-----HHHHHHHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDT-KHFNVGKYRRLKHGVNQSADFFRADNPEGME--A-----RNEVAALAM 423 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~t-dv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~--~-----~~~vA~~~l 423 (699)
.-|+++|.|||||||+|+.|+++++...+++ +++ |+...... .+ ...... . -.++...++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~l-----r~~~~~~~---~~----~~~~~~~~~~G~~v~d~l~~~~~ 70 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLL-----RSEVAAGS---AL----GQEAEAVMNRGELVSDALVLAIV 70 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHH-----HHHHhcCC---HH----HHHHHHHHHcCCCCCHHHHHHHH
Confidence 3589999999999999999999987665544 333 44321110 00 000000 0 001111111
Q ss_pred HHHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHH
Q 005388 424 EDMISWMHE-GGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (699)
Q Consensus 424 ~dl~~~L~~-~G~vVIlDAtn~~~e~R~~l~el-~~~~~~v-ifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~ 500 (699)
.+.|.. .+..+|+|+...+..+++.+.++ .+.+..+ .+|.+.| +++++.+|+..|.+ +| |.+ +
T Consensus 71 ---~~~l~~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~-~~~~l~~Rl~~R~r--~d-----D~~---e 136 (183)
T PRK14531 71 ---ESQLKALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLEL-DDAVLIERLLARGR--AD-----DNE---A 136 (183)
T ss_pred ---HHHHhhccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEEC-CHHHHHHHhhcCCC--CC-----CCH---H
Confidence 112222 24457889999999988888776 4333322 2344444 48999999987743 11 222 2
Q ss_pred HHHHHHHhhhhhccCC
Q 005388 501 DFKNRLANYEKVYEPV 516 (699)
Q Consensus 501 d~~~Ri~~y~~~yEpl 516 (699)
.+.+|++.|++..+|+
T Consensus 137 ~i~~Rl~~y~~~~~pv 152 (183)
T PRK14531 137 VIRNRLEVYREKTAPL 152 (183)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567888888777765
No 92
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.88 E-value=3.1e-08 Score=98.17 Aligned_cols=146 Identities=14% Similarity=0.156 Sum_probs=87.2
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh-hHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG-KYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g-dyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L 430 (699)
-+++++|++||||||+++.|+..+....++.+.+... ..|+...+. .+.+.........+..++... +
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~----~~~~~~~~~~~~~~~~~~~~~-------~ 72 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGI----PLTDEDRLPWLERLNDASYSL-------Y 72 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCC----CCCcccchHHHHHHHHHHHHH-------H
Confidence 4789999999999999999999887654444433221 134433222 222222222233333333221 1
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHhhh
Q 005388 431 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYE 510 (699)
Q Consensus 431 ~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri~~y~ 510 (699)
..+...+|+ +++..+..|+.+++. +..+.||.|.|+ .+++.+|+.+|.. ++ + +++.+ ..|.
T Consensus 73 ~~~~~g~iv-~s~~~~~~R~~~r~~---~~~~~~v~l~a~-~~~l~~Rl~~R~~---~~--~-~~~vl--------~~Q~ 133 (176)
T PRK09825 73 KKNETGFIV-CSSLKKQYRDILRKS---SPNVHFLWLDGD-YETILARMQRRAG---HF--M-PPDLL--------QSQF 133 (176)
T ss_pred hcCCCEEEE-EEecCHHHHHHHHhh---CCCEEEEEEeCC-HHHHHHHHhcccC---CC--C-CHHHH--------HHHH
Confidence 212334455 889998888877544 556777777777 7899999988853 22 3 56665 6677
Q ss_pred hhccCCCCC-CceEEeec
Q 005388 511 KVYEPVDEG-SYIKMIDM 527 (699)
Q Consensus 511 ~~yEpl~e~-~yik~in~ 527 (699)
+.|||.+.+ .=+..+|.
T Consensus 134 ~~~e~~~~~e~~~~~~d~ 151 (176)
T PRK09825 134 DALERPCADEHDIARIDV 151 (176)
T ss_pred HHcCCCCCCcCCeEEEEC
Confidence 777877533 12444454
No 93
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.87 E-value=8.3e-09 Score=99.80 Aligned_cols=142 Identities=16% Similarity=0.255 Sum_probs=74.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
.+.+|+|+|+|||||||+|+.|+++|++.. ++.|++.+...+.... .++.......+.... ..++.++
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~-----~d~d~~~~~~~g~~~~-~~~~~~g~~~~~~~~---~~~~~~l--- 70 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDF-----IDTDHLIEARAGKSIP-EIFEEEGEAAFRELE---EEVLAEL--- 70 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCE-----EEChHHHHHHcCCCHH-HHHHHHCHHHHHHHH---HHHHHHH---
Confidence 467899999999999999999999987544 4555556555443322 222223333332222 1112211
Q ss_pred HhcCCeEEEEeCC-CC-CHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCCh-HHHHHHHHHHH
Q 005388 430 MHEGGQVGIFDAT-NS-SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNRL 506 (699)
Q Consensus 430 L~~~G~vVIlDAt-n~-~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~-e~al~d~~~Ri 506 (699)
+...+ .||..+. .. ....|..+ . .+..++||.+ +.+.+.+|+..+.. .+-.... +. +...+.|..|.
T Consensus 71 ~~~~~-~vi~~g~~~~~~~~~r~~l---~-~~~~~v~l~~---~~~~~~~R~~~~~~-r~~~~~~-~~~~~~~~~~~~~~ 140 (175)
T PRK00131 71 LARHN-LVISTGGGAVLREENRALL---R-ERGTVVYLDA---SFEELLRRLRRDRN-RPLLQTN-DPKEKLRDLYEERD 140 (175)
T ss_pred HhcCC-CEEEeCCCEeecHHHHHHH---H-hCCEEEEEEC---CHHHHHHHhcCCCC-CCcCCCC-ChHHHHHHHHHHHH
Confidence 11223 3443332 11 22334333 2 2455666655 67888899976543 3333322 22 33334455566
Q ss_pred Hhhhhhc
Q 005388 507 ANYEKVY 513 (699)
Q Consensus 507 ~~y~~~y 513 (699)
..|...|
T Consensus 141 ~~~~~~~ 147 (175)
T PRK00131 141 PLYEEVA 147 (175)
T ss_pred HHHHhhc
Confidence 6565443
No 94
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.86 E-value=1e-08 Score=118.12 Aligned_cols=145 Identities=13% Similarity=0.134 Sum_probs=99.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
+...|+|+|+|||||||+++.|++.|++..+++|. +-....|... .++|....++.++.++..+...+.
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~-----~ie~~~g~si-~eif~~~Ge~~FR~~E~~~l~~~~----- 73 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV-----EIEREIGMSI-PSYFEEYGEPAFREVEADVVADML----- 73 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH-----HHHHHHCcCH-HHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 34569999999999999999999999987766654 3444444333 357777788888777655443221
Q ss_pred HhcCCeEEEEeCC---CCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHH
Q 005388 430 MHEGGQVGIFDAT---NSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (699)
Q Consensus 430 L~~~G~vVIlDAt---n~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri 506 (699)
. ....|| ... -..++.|+.+.++.+.+..++||.. +++.+.+|+... ..+|-+.+. ..+.+.+.|.+|.
T Consensus 74 -~-~~~~VI-s~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~---~~~~l~~Rl~~~-~~RPll~~~-~~~~~~~l~~~R~ 145 (542)
T PRK14021 74 -E-DFDGIF-SLGGGAPMTPSTQHALASYIAHGGRVVYLDA---DPKEAMERANRG-GGRPMLNGD-ANKRWKKLFKQRD 145 (542)
T ss_pred -h-cCCeEE-ECCCchhCCHHHHHHHHHHHhcCCEEEEEEC---CHHHHHHHHhCC-CCCCCCCCC-cHHHHHHHHHHHH
Confidence 1 222333 222 2345667777766444557889988 799999999754 347877654 4667777788999
Q ss_pred Hhhhhhc
Q 005388 507 ANYEKVY 513 (699)
Q Consensus 507 ~~y~~~y 513 (699)
+.|++..
T Consensus 146 ~~Y~~~A 152 (542)
T PRK14021 146 PVFRQVA 152 (542)
T ss_pred HHHHhhC
Confidence 9998743
No 95
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.84 E-value=3.1e-08 Score=99.66 Aligned_cols=128 Identities=19% Similarity=0.293 Sum_probs=78.6
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcC---CCCHHHHHHHHHHHHHHHH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFR---ADNPEGMEARNEVAALAME 424 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~---~~~~~~~~~~~~vA~~~l~ 424 (699)
...|.+|+|.|-|||||||++..+...+. +....++|.|++|+.. ..|.. .............+....+
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~------p~~~~~~~~~~~~~~~~~~~~a~~~~~ 83 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFH------PDYDELLKADPDEASELTQKEASRLAE 83 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGS------TTHHHHHHHHCCCTHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhc------cchhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 45899999999999999999999998865 5667789999997732 11100 0011122333344555555
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 425 DMISWMHEGGQVGIFDATNSSRKRRN-MLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 425 dl~~~L~~~G~vVIlDAtn~~~e~R~-~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
.+.+++.+.|..+|+|.|+...+.-. .+..+.+.|+++..+-+.|+ +++-..|+..|..
T Consensus 84 ~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~-~e~s~~rv~~R~~ 143 (199)
T PF06414_consen 84 KLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVP-PELSIERVRQRYE 143 (199)
T ss_dssp HHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE----HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECC-HHHHHHHHHHHHH
Confidence 56666667899999999999877644 55566788998877766665 7877788877744
No 96
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.84 E-value=1.6e-08 Score=96.72 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=94.9
Q ss_pred EccCCCChhHHHHHHHHHHhhcCCCceEeeh-hhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 005388 357 VGLPARGKTFTAAKLTRYLRWLGHDTKHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQ 435 (699)
Q Consensus 357 vGLPGSGKSTlAr~La~~L~~~gi~tdv~~~-gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~~G~ 435 (699)
.|.+||||||++++|+++|++..++-|-|+. .+++|.. ......++++.--.+.+...+.... +.|.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~----~GiPL~DdDR~pWL~~l~~~~~~~~--------~~~~ 68 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMS----AGIPLNDDDRWPWLEALGDAAASLA--------QKNK 68 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHh----CCCCCCcchhhHHHHHHHHHHHHhh--------cCCC
Confidence 3889999999999999999999988888776 3333333 3334455555543444444444322 2566
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHhhhhhccC
Q 005388 436 VGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKVYEP 515 (699)
Q Consensus 436 vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri~~y~~~yEp 515 (699)
.+|+-+..+++.+|+.+++-.. ++.++|++- +.+++.+|+..|+.+ | + +..++ +-|-...|+
T Consensus 69 ~~vi~CSALKr~YRD~LR~~~~-~~~Fv~L~g---~~~~i~~Rm~~R~gH---F--M--~~~ll-------~SQfa~LE~ 130 (161)
T COG3265 69 HVVIACSALKRSYRDLLREANP-GLRFVYLDG---DFDLILERMKARKGH---F--M--PASLL-------DSQFATLEE 130 (161)
T ss_pred ceEEecHHHHHHHHHHHhccCC-CeEEEEecC---CHHHHHHHHHhcccC---C--C--CHHHH-------HHHHHHhcC
Confidence 7888999999999999997743 377777776 799999999988762 2 1 22332 333333444
Q ss_pred CCCCCceEEeec
Q 005388 516 VDEGSYIKMIDM 527 (699)
Q Consensus 516 l~e~~yik~in~ 527 (699)
...+..+..|+.
T Consensus 131 P~~de~vi~idi 142 (161)
T COG3265 131 PGADEDVLTIDI 142 (161)
T ss_pred CCCCCCEEEeeC
Confidence 443357777776
No 97
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.83 E-value=3e-08 Score=97.75 Aligned_cols=138 Identities=21% Similarity=0.232 Sum_probs=83.3
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L 430 (699)
+..|+++|+||+||||+|+.|++.+++..+++ |..++...|... ..++....+..|+.++. .++++ +
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~-----D~~i~~~~g~~i-~~~~~~~g~~~fr~~e~---~~l~~----l 70 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS-----DQEIEKRTGADI-GWVFDVEGEEGFRDREE---KVINE----L 70 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEEC-----CchHHHHhCcCH-hHHHHHhCHHHHHHHHH---HHHHH----H
Confidence 45699999999999999999999977554444 444555554321 23445556666665532 22222 2
Q ss_pred hcCCeEEEEeCCC---CCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChH-HHHHHHHHHH
Q 005388 431 HEGGQVGIFDATN---SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFE-AGLQDFKNRL 506 (699)
Q Consensus 431 ~~~G~vVIlDAtn---~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e-~al~d~~~Ri 506 (699)
...+.+|| .... .+++.|..+. +. ..++||++ +.+.+.+|+..+. .+|...+. .++ .+.+.+.+|.
T Consensus 71 ~~~~~~vi-~~ggg~v~~~~~~~~l~---~~-~~vv~L~~---~~e~~~~Ri~~~~-~rP~~~~~-~~~~~~~~l~~~R~ 140 (172)
T PRK05057 71 TEKQGIVL-ATGGGSVKSRETRNRLS---AR-GVVVYLET---TIEKQLARTQRDK-KRPLLQVD-DPREVLEALANERN 140 (172)
T ss_pred HhCCCEEE-EcCCchhCCHHHHHHHH---hC-CEEEEEeC---CHHHHHHHHhCCC-CCCCCCCC-CHHHHHHHHHHHHH
Confidence 22344444 3322 2333343333 33 36788887 7899999997553 47888755 444 3444567787
Q ss_pred Hhhhh
Q 005388 507 ANYEK 511 (699)
Q Consensus 507 ~~y~~ 511 (699)
+.|++
T Consensus 141 ~~Y~~ 145 (172)
T PRK05057 141 PLYEE 145 (172)
T ss_pred HHHHh
Confidence 77755
No 98
>PRK01184 hypothetical protein; Provisional
Probab=98.78 E-value=1.2e-07 Score=93.79 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=73.0
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhh-HHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHH-HHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM-ISW 429 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gd-yRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl-~~~ 429 (699)
++|+|+|+|||||||+|+ +++.+++ .+++.|| +|+........ ...........+.+..+......++ ...
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~-----~~i~~~d~lr~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 74 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGI-----PVVVMGDVIREEVKKRGLE-PTDENIGKVAIDLRKELGMDAVAKRTVPK 74 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCC-----cEEEhhHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 489999999999999997 5555443 3355444 46644221111 1111112222222222221222111 222
Q ss_pred Hh-cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHh
Q 005388 430 MH-EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLAN 508 (699)
Q Consensus 430 L~-~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri~~ 508 (699)
+. ..+..||+|+. .....++.+++.....+.+++| .|+ .++..+|+..|.+ ..|. . + .+++.+|+..
T Consensus 75 i~~~~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v--~~~-~~~~~~Rl~~R~~-~~d~--~-~----~~~~~~r~~~ 142 (184)
T PRK01184 75 IREKGDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAI--HAP-PEVRFERLKKRGR-SDDP--K-S----WEELEERDER 142 (184)
T ss_pred HHhcCCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEE--ECC-HHHHHHHHHHcCC-CCCh--h-h----HHHHHHHHHH
Confidence 33 34789999998 4666666666653323344444 455 7788888876643 1111 1 1 4566777765
Q ss_pred h
Q 005388 509 Y 509 (699)
Q Consensus 509 y 509 (699)
+
T Consensus 143 q 143 (184)
T PRK01184 143 E 143 (184)
T ss_pred H
Confidence 4
No 99
>PLN02200 adenylate kinase family protein
Probab=98.77 E-value=9.1e-08 Score=99.13 Aligned_cols=141 Identities=16% Similarity=0.286 Sum_probs=80.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCCCCCCcCCCCHHHHHHH-------HHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAAL 421 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~~~~~~~~-------~~vA~~ 421 (699)
.|++|+++|.|||||||+|+.|+++++.. .++.|++ |+..... .. ........+ .++...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~-----his~gdllR~~i~~~-s~------~~~~i~~~~~~G~~vp~e~~~~ 109 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFK-----HLSAGDLLRREIASN-SE------HGAMILNTIKEGKIVPSEVTVK 109 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCe-----EEEccHHHHHHHhcc-Ch------hHHHHHHHHHcCCCCcHHHHHH
Confidence 57899999999999999999999997653 3555554 3322111 00 000000000 011111
Q ss_pred HHHHHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHHHcCCc-eEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHH
Q 005388 422 AMEDMISWMHE-GGQVGIFDATNSSRKRRNMLMKMAEGNC-KIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGL 499 (699)
Q Consensus 422 ~l~dl~~~L~~-~G~vVIlDAtn~~~e~R~~l~el~~~~~-~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al 499 (699)
.+. ..+.. .+..+|+|+...+.+++..+..+..... .+++++ |+ ++++.+|+..|...+.| +-.
T Consensus 110 ~l~---~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld--~~-~e~~~~Rl~~R~~~r~d--------d~~ 175 (234)
T PLN02200 110 LIQ---KEMESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFD--CP-EEEMVKRVLNRNQGRVD--------DNI 175 (234)
T ss_pred HHH---HHHhcCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEE--CC-HHHHHHHHHcCcCCCCC--------CCH
Confidence 111 11221 2456899998888888877776632222 344454 44 77888888776432222 123
Q ss_pred HHHHHHHHhhhhhccCC
Q 005388 500 QDFKNRLANYEKVYEPV 516 (699)
Q Consensus 500 ~d~~~Ri~~y~~~yEpl 516 (699)
+.+.+|++.|.+..+|+
T Consensus 176 e~~~~Rl~~y~~~~~pv 192 (234)
T PLN02200 176 DTIKKRLKVFNALNLPV 192 (234)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45678888888877764
No 100
>PLN02199 shikimate kinase
Probab=98.77 E-value=2.8e-08 Score=105.58 Aligned_cols=141 Identities=17% Similarity=0.175 Sum_probs=88.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHh-hCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK-HGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~-~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
...|+|+|+|||||||+++.|++.|++..+++|.+ -+.. .|. .-..+|....+..++.++..+..-+.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~l-----Ie~~~~G~-sI~eIf~~~GE~~FR~~E~e~L~~L~----- 170 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTL-----IEQAMNGT-SVAEIFVHHGENFFRGKETDALKKLS----- 170 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHH-----HHHHhcCC-CHHHHHHHhCHHHHHHHHHHHHHHHH-----
Confidence 44799999999999999999999988877666544 3332 232 22356777788777766654443222
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh-hccCCCCCCCCCh-------HHHHHH
Q 005388 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK-IQQSPDYAEEPDF-------EAGLQD 501 (699)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r-~~~spD~s~~~d~-------e~al~d 501 (699)
.....|| . |..-.-.+...+.+.+. ..++||.+ +.+.+.+||... ...+|...+. +. +.+.+.
T Consensus 171 --~~~~~VI-S-tGGG~V~~~~n~~~L~~-G~vV~Lda---s~E~l~~RL~~~~~~~RPLL~~~-~~d~~~~~~~~L~~L 241 (303)
T PLN02199 171 --SRYQVVV-S-TGGGAVIRPINWKYMHK-GISIWLDV---PLEALAHRIAAVGTDSRPLLHDE-SGDAYSVAFKRLSAI 241 (303)
T ss_pred --hcCCEEE-E-CCCcccCCHHHHHHHhC-CeEEEEEC---CHHHHHHHHhhcCCCCCCcCCCC-CcchhhhHHHHHHHH
Confidence 1233343 3 33222333444444333 45788887 799999999852 2346776543 33 455566
Q ss_pred HHHHHHhhhh
Q 005388 502 FKNRLANYEK 511 (699)
Q Consensus 502 ~~~Ri~~y~~ 511 (699)
|.+|.+.|++
T Consensus 242 ~~~R~plY~~ 251 (303)
T PLN02199 242 WDERGEAYTN 251 (303)
T ss_pred HHHHHHHHHh
Confidence 7888888875
No 101
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.75 E-value=4.8e-08 Score=95.30 Aligned_cols=137 Identities=18% Similarity=0.257 Sum_probs=76.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~ 432 (699)
.|+++|+|||||||+|+.|++.|++..+++ |.+.....+..... ++.......++.++.-+... +.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~-----D~~~~~~~g~~~~~-~~~~~g~~~~~~~e~~~~~~-------~~- 69 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDT-----DQWLQSTSNMTVAE-IVEREGWAGFRARESAALEA-------VT- 69 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEc-----cHHHHHHhCCCHHH-HHHHHCHHHHHHHHHHHHHH-------hc-
Confidence 478899999999999999999988765444 44455444433322 33333444444443322221 22
Q ss_pred CCeEEEEeCCC--CCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhc--cCCCCCCCCCh-HHHHHHHHHHHH
Q 005388 433 GGQVGIFDATN--SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ--QSPDYAEEPDF-EAGLQDFKNRLA 507 (699)
Q Consensus 433 ~G~vVIlDAtn--~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~--~spD~s~~~d~-e~al~d~~~Ri~ 507 (699)
.+..||.-+.+ .....|..+ .+.+ .++|+.+ +++++.+|+..+.. .+|...+. +. +...+-|.+|.+
T Consensus 70 ~~~~vi~~ggg~vl~~~~~~~l---~~~~-~~v~l~~---~~~~~~~Rl~~r~~~~~rp~~~~~-~~~~~~~~~~~~r~~ 141 (171)
T PRK03731 70 APSTVIATGGGIILTEENRHFM---RNNG-IVIYLCA---PVSVLANRLEANPEEDQRPTLTGK-PISEEVAEVLAEREA 141 (171)
T ss_pred CCCeEEECCCCccCCHHHHHHH---HhCC-EEEEEEC---CHHHHHHHHccccccccCCcCCCC-ChHHHHHHHHHHHHH
Confidence 24344432221 233334333 2333 4677776 78999999976532 24545444 43 334444666777
Q ss_pred hhhh
Q 005388 508 NYEK 511 (699)
Q Consensus 508 ~y~~ 511 (699)
.|++
T Consensus 142 ~y~~ 145 (171)
T PRK03731 142 LYRE 145 (171)
T ss_pred HHHH
Confidence 7764
No 102
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.73 E-value=7.2e-08 Score=92.76 Aligned_cols=122 Identities=15% Similarity=0.202 Sum_probs=83.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhh-HHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gd-yRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
-|.+|++.|.+||||||++++|.+.|+|..++.|-|+.-. .++...| ....++++-- .+.+++..+..++.
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~G----ipLnD~DR~p---WL~~i~~~~~~~l~- 82 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQG----IPLNDDDRWP---WLKKIAVELRKALA- 82 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcC----CCCCcccccH---HHHHHHHHHHHHhh-
Confidence 4679999999999999999999999999998888776633 3343333 2233344432 33333333332211
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-H-----c-CCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-A-----E-GNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~el-~-----~-~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
.|+.||+.+..+++.+|+.++.- . + ...++.||-... ..+++..|+..|+.
T Consensus 83 ----~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~Rl~~R~g 140 (191)
T KOG3354|consen 83 ----SGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKRLKKRKG 140 (191)
T ss_pred ----cCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHHHHHhhccc
Confidence 69999999999999999999984 1 1 123444444444 58999999988865
No 103
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.71 E-value=1.1e-07 Score=93.43 Aligned_cols=140 Identities=15% Similarity=0.231 Sum_probs=71.1
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCC----------CCCCcCCCCHHHHHHHHHHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQ----------SADFFRADNPEGMEARNEVAA 420 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~----------~~~f~~~~~~~~~~~~~~vA~ 420 (699)
.+|+++|.|||||||+|+.|+++++... ++.|++ |+...+... ...+.+ ....+..+...+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~- 75 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTH-----LSTGDLLRAEVASGSERGKQLQAIMESGDLVP--LDTVLDLLKDAM- 75 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcE-----EeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH-
Confidence 3789999999999999999999976443 444443 332111000 000000 011111111111
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHH
Q 005388 421 LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (699)
Q Consensus 421 ~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~ 500 (699)
..- ...|..+|+|+...+..+...+.........++++++ +++.+.+|+..|... .+-.+. -..
T Consensus 76 ------~~~-~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~---~~~~~~~Rl~~R~~~-~~r~d~-----~~~ 139 (188)
T TIGR01360 76 ------VAA-LGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDC---SEDTMVKRLLKRAET-SGRVDD-----NEK 139 (188)
T ss_pred ------Hcc-cCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEEC---CHHHHHHHHHccccc-CCCCCC-----CHH
Confidence 111 1247889999987665444443322111223445554 478888898776531 222222 123
Q ss_pred HHHHHHHhhhhhccC
Q 005388 501 DFKNRLANYEKVYEP 515 (699)
Q Consensus 501 d~~~Ri~~y~~~yEp 515 (699)
.+.+|+..|.....|
T Consensus 140 ~~~~r~~~~~~~~~~ 154 (188)
T TIGR01360 140 TIKKRLETYYKATEP 154 (188)
T ss_pred HHHHHHHHHHHhhHH
Confidence 456677666544333
No 104
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.66 E-value=2.6e-07 Score=91.66 Aligned_cols=123 Identities=20% Similarity=0.230 Sum_probs=69.8
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhC-C-CCCCCC-cCCC---CHHHHHHHHHHHHHHHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG-V-NQSADF-FRAD---NPEGMEARNEVAALAMED 425 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g-~-~~~~~f-~~~~---~~~~~~~~~~vA~~~l~d 425 (699)
.+|+|.|-|.|||||||+.|+..+. ..--.+..|.+++.... . ....++ +..+ ....+..+......+
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~---~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--- 75 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLP---EPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAA--- 75 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSS---S-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHH---
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCc---CCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHH---
Confidence 4799999999999999999999875 22234666777773211 1 111222 1111 122222222222221
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHH-HHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 426 MISWMHEGGQVGIFDATNSSRKR-RNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 426 l~~~L~~~G~vVIlDAtn~~~e~-R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
++-+.+.|..||+|........ .+.++++.+ +++++||.+.|+ .+++++|=+.|.
T Consensus 76 -iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~-~~~vl~VgV~Cp-leil~~RE~~Rg 131 (174)
T PF07931_consen 76 -IAAMARAGNNVIVDDVFLGPRWLQDCLRRLLA-GLPVLFVGVRCP-LEILERRERARG 131 (174)
T ss_dssp -HHHHHHTT-EEEEEE--TTTHHHHHHHHHHHT-TS-EEEEEEE---HHHHHHHHHHHT
T ss_pred -HHHHHhCCCCEEEecCccCcHHHHHHHHHHhC-CCceEEEEEECC-HHHHHHHHHhcC
Confidence 1224458999999999888775 677766543 788999999999 567777776664
No 105
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.63 E-value=1.1e-07 Score=102.38 Aligned_cols=148 Identities=16% Similarity=0.181 Sum_probs=82.5
Q ss_pred CCCCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 005388 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (699)
Q Consensus 346 ~~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~d 425 (699)
++-.++..|+++|+|||||||+|+.|++.|++..+ +.|.+.....|.... .++....+..++.++.- ++.
T Consensus 128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i-----d~D~~i~~~~G~~i~-ei~~~~G~~~fr~~e~~---~l~- 197 (309)
T PRK08154 128 RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFV-----ELNREIEREAGLSVS-EIFALYGQEGYRRLERR---ALE- 197 (309)
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE-----eHHHHHHHHhCCCHH-HHHHHHCHHHHHHHHHH---HHH-
Confidence 34456778999999999999999999999876554 445556555553322 22333344444433222 111
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHH
Q 005388 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 505 (699)
Q Consensus 426 l~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~R 505 (699)
+.+.+.+.+||..+... ...-..+..+.+ ++.++||.+ +++.+.+|+..+...+|...+....+.+.+.+.+|
T Consensus 198 --~ll~~~~~~VI~~Ggg~-v~~~~~~~~l~~-~~~~V~L~a---~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R 270 (309)
T PRK08154 198 --RLIAEHEEMVLATGGGI-VSEPATFDLLLS-HCYTVWLKA---SPEEHMARVRAQGDLRPMADNREAMEDLRRILASR 270 (309)
T ss_pred --HHHhhCCCEEEECCCch-hCCHHHHHHHHh-CCEEEEEEC---CHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHH
Confidence 11223354555443332 111111112323 445666655 68999999987654445332221356666667777
Q ss_pred HHhhh
Q 005388 506 LANYE 510 (699)
Q Consensus 506 i~~y~ 510 (699)
.+.|+
T Consensus 271 ~~~y~ 275 (309)
T PRK08154 271 EPLYA 275 (309)
T ss_pred HHHHH
Confidence 77775
No 106
>PRK12338 hypothetical protein; Provisional
Probab=98.60 E-value=3.6e-07 Score=98.37 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=83.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCC------------------C--C-
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRA------------------D--N- 408 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~------------------~--~- 408 (699)
+|.+|+++|.||+||||+|++|+++|++.. +...|-+|+...+.... .+.+. . .
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~----~~~tD~~r~~~~~~~~~-~~~P~l~~ssy~a~~~l~~~~~~~~~~~ 77 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKH----LIETDFIREVVRGIIGK-EYAPALHKSSYNAYTALRDKENFKNNEE 77 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeE----EccChHHHHHHcCCCCc-ccCchhhcccHHHHhhcCCcccccchHH
Confidence 578999999999999999999999987643 23444458766553221 11000 0 0
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 409 --PEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 409 --~~~~~~~~~vA~~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
-.+|.....++...++.++.-....|..+|+++....+........ .....+.|+-.. +|++..++|...|..
T Consensus 78 ~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~--~~~~~v~~~vl~-~dee~h~~Rf~~R~~ 152 (319)
T PRK12338 78 LICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQF--EENASIHFFILS-ADEEVHKERFVKRAM 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhh--cccCceEEEEEE-CCHHHHHHHHHHhhh
Confidence 1234444555566666666655567999999999999877654221 122345555554 789999999988764
No 107
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.59 E-value=5.2e-07 Score=89.25 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=81.1
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCCCCCCcCCCCHHHHHHHH---HHH-HHHHHHHHH
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN---EVA-ALAMEDMIS 428 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~~~~~~~~~---~vA-~~~l~dl~~ 428 (699)
|+++|.|||||||+|+.|++.++... ++.|++ |+..... . .+ .......+. .+- ..+..-+..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~-----i~~~~l~~~~~~~~-~--~~----~~~~~~~~~~g~~~~~~~~~~l~~~ 69 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH-----ISTGDLLREEIASG-T--EL----GKKAKEYIDSGKLVPDEIVIKLLKE 69 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE-----EECcHHHHHHHhcC-C--hH----HHHHHHHHHcCCccCHHHHHHHHHH
Confidence 79999999999999999999865443 555444 3322110 0 00 000000000 000 001111122
Q ss_pred HHhc--CCeEEEEeCCCCCHHHHHHHHHHHc-CCceEEEEEEEeCCHHHHHHHHHHhhccCC---CCC-----------C
Q 005388 429 WMHE--GGQVGIFDATNSSRKRRNMLMKMAE-GNCKIIFLETICNDRDIIERNIRLKIQQSP---DYA-----------E 491 (699)
Q Consensus 429 ~L~~--~G~vVIlDAtn~~~e~R~~l~el~~-~~~~vifIE~~c~d~e~i~rrI~~r~~~sp---D~s-----------~ 491 (699)
.+.+ .+..+|+|+...+..+.+.+.+... .....++|.+.|+ ++++.+|+..|..... .|. .
T Consensus 70 ~l~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~ 148 (194)
T cd01428 70 RLKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVP-DEVLIERILGRRICPVSGRVYHLGKDDVTGEPLS 148 (194)
T ss_pred HHhcccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccc
Confidence 2332 2566889998777777777777632 2233334444455 7888888887753210 110 0
Q ss_pred CCChHHHHHHHHHHHHhhhhhccCCC
Q 005388 492 EPDFEAGLQDFKNRLANYEKVYEPVD 517 (699)
Q Consensus 492 ~~d~e~al~d~~~Ri~~y~~~yEpl~ 517 (699)
. ..++..+.+.+|+..|+...+|+-
T Consensus 149 ~-r~dd~~~~i~~R~~~y~~~~~~i~ 173 (194)
T cd01428 149 Q-RSDDNEETIKKRLEVYKEQTAPLI 173 (194)
T ss_pred c-CCCCCHHHHHHHHHHHHHhHHHHH
Confidence 0 112233568889999988777764
No 108
>PRK14530 adenylate kinase; Provisional
Probab=98.58 E-value=5.5e-07 Score=91.57 Aligned_cols=148 Identities=16% Similarity=0.233 Sum_probs=79.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCH-HHHHHH-----HHHHHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNP-EGMEAR-----NEVAALAMEDM 426 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~-~~~~~~-----~~vA~~~l~dl 426 (699)
.|+++|.|||||||+|+.|+++++... ++.|++-+...+..... .+..... ..+... .++...++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~-----i~~g~~lr~~~~~~~~~-~~~~~~~~~~~~~~g~~~~d~~~~~~l~-- 76 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEH-----VTTGDALRANKQMDISD-MDTEYDTPGEYMDAGELVPDAVVNEIVE-- 76 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE-----EeccHHHHHhccCCccc-ccchHHHHHHHHHcCCCCCHHHHHHHHH--
Confidence 588899999999999999999976443 44455544222111111 1111000 000000 011112121
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCC----CC------------
Q 005388 427 ISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPD----YA------------ 490 (699)
Q Consensus 427 ~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD----~s------------ 490 (699)
..+. ....+|+|+...+.+.++.+..+...+ .++++++ +.+++.+|+..|... +. |.
T Consensus 77 -~~l~-~~~~~IldG~pr~~~q~~~l~~~~~~d-~vI~Ld~---~~~~l~~Rl~~R~~~-~~~g~~~~~~~~~p~~~~~~ 149 (215)
T PRK14530 77 -EALS-DADGFVLDGYPRNLEQAEYLESITDLD-VVLYLDV---SEEELVDRLTGRRVC-PDCGANYHVEFNQPEEEGVC 149 (215)
T ss_pred -HHHh-cCCCEEEcCCCCCHHHHHHHHHhcCCC-EEEEEeC---CHHHHHHHHhCCCcC-cccCCccccCCCCCcccccC
Confidence 1222 234578898666676766665543222 3556665 578888999877431 11 00
Q ss_pred -------CCCChHHHHHHHHHHHHhhhhhccCC
Q 005388 491 -------EEPDFEAGLQDFKNRLANYEKVYEPV 516 (699)
Q Consensus 491 -------~~~d~e~al~d~~~Ri~~y~~~yEpl 516 (699)
.. ..++..+...+|+..|.+...|+
T Consensus 150 ~~~~~rl~~-R~dD~~e~i~~Rl~~y~~~~~~v 181 (215)
T PRK14530 150 DECGGELIQ-RDDDTEETVRERLDVFEENTEPV 181 (215)
T ss_pred cccCCcccC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 00 11233455788999998876665
No 109
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.56 E-value=1e-07 Score=96.61 Aligned_cols=145 Identities=16% Similarity=0.161 Sum_probs=79.4
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCCCCCCcCCCCHHHHHHHH-------HHHHHHHHH
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN-------EVAALAMED 425 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~~~~~~~~~-------~vA~~~l~d 425 (699)
|+++|.|||||||+|+.|+++++... ++.|+. |+..... . .+ .......+. ++... -
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~-----is~gdllr~~~~~~-~--~~----~~~~~~~~~~g~~vp~~~~~~---l 66 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPH-----ISTGDLLRAEIKAG-T--PL----GKKAKEYMEKGELVPDEIVNQ---L 66 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCe-----eehhHHHHHhhccc-c--HH----HHHHHHHHhCCCCCCHHHHHH---H
Confidence 78899999999999999999876544 444443 3322110 0 00 000000000 11111 1
Q ss_pred HHHHHhc---CCeEEEEeCCCCCHHHHHHHHHHHc-CCceEEEEEEEeCCHHHHHHHHHHhhcc---CCCC---------
Q 005388 426 MISWMHE---GGQVGIFDATNSSRKRRNMLMKMAE-GNCKIIFLETICNDRDIIERNIRLKIQQ---SPDY--------- 489 (699)
Q Consensus 426 l~~~L~~---~G~vVIlDAtn~~~e~R~~l~el~~-~~~~vifIE~~c~d~e~i~rrI~~r~~~---spD~--------- 489 (699)
+...+.+ .+..+|+|+...+..+.+.+.+... .-..++++++ + ++++.+|+..|... ...|
T Consensus 67 ~~~~i~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~--~-~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~ 143 (210)
T TIGR01351 67 VKERLTQNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDV--P-DEELVERLSGRRICPSCGRVYHLKFNPPKV 143 (210)
T ss_pred HHHHHhcCcccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEEC--C-HHHHHHHHHCCCccCCcCCccccccCCCcc
Confidence 1223332 2567999997777777777776633 2223455554 4 78888899877420 0000
Q ss_pred ------CC----CCChHHHHHHHHHHHHhhhhhccCCC
Q 005388 490 ------AE----EPDFEAGLQDFKNRLANYEKVYEPVD 517 (699)
Q Consensus 490 ------s~----~~d~e~al~d~~~Ri~~y~~~yEpl~ 517 (699)
.+ . ..++-.+-+.+|+..|+....|+-
T Consensus 144 ~~~~~~~~~~l~~-R~dD~~e~i~~Rl~~y~~~~~~v~ 180 (210)
T TIGR01351 144 PGCDDCTGELLIQ-REDDTEEVVKKRLEVYKEQTEPLI 180 (210)
T ss_pred CCcCcccCCcccc-CCCCCHHHHHHHHHHHHHhhHHHH
Confidence 00 0 112234457889999988777764
No 110
>PRK06696 uridine kinase; Validated
Probab=98.53 E-value=6.6e-07 Score=91.66 Aligned_cols=150 Identities=19% Similarity=0.259 Sum_probs=82.3
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHH-----hhCCCCCCCCcCCCCHHHHHHHHHHHHHH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL-----KHGVNQSADFFRADNPEGMEARNEVAALA 422 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~-----~~g~~~~~~f~~~~~~~~~~~~~~vA~~~ 422 (699)
..+|++|.+.|.|||||||+|++|++.|+..|..+.+++.|+|-+- ..+.....+++.. .-.+..+.+.....
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~--~~d~~~L~~~l~~~ 96 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYED--AYDYTALRRLLLDP 96 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCcc--ccCHHHHHHHHHhh
Confidence 4579999999999999999999999999877777777777777331 1122222222211 11111221111110
Q ss_pred H--------H----H-----HH--HH-HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 005388 423 M--------E----D-----MI--SW-MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (699)
Q Consensus 423 l--------~----d-----l~--~~-L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r 482 (699)
+ . + +. .+ ....+.+||+|++...... +..+. -.++||++ +.++..+|+..|
T Consensus 97 l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~---~~~~~---d~~i~v~~---~~e~~~~R~~~R 167 (223)
T PRK06696 97 LGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPE---LRDLW---DYKIFLDT---DFEVSRRRGAKR 167 (223)
T ss_pred ccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhh---HHhhC---CEEEEEEC---CHHHHHHHHHHh
Confidence 0 0 0 00 00 0123568899998765332 21111 13456655 578888887666
Q ss_pred hccCCCCCCCCChHHHHHHHHHHHHhhhhhc
Q 005388 483 IQQSPDYAEEPDFEAGLQDFKNRLANYEKVY 513 (699)
Q Consensus 483 ~~~spD~s~~~d~e~al~d~~~Ri~~y~~~y 513 (699)
.. +... ..+++...|..|....+..|
T Consensus 168 d~--~~~g---~~~~~~~~~~~r~~~~~~~y 193 (223)
T PRK06696 168 DT--EAFG---SYEEAEKMYLARYHPAQKLY 193 (223)
T ss_pred hh--hhhC---CchHHHHHHHHHHhHHHHHH
Confidence 42 2222 23456777888874444444
No 111
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.53 E-value=1.1e-07 Score=92.15 Aligned_cols=132 Identities=18% Similarity=0.199 Sum_probs=78.8
Q ss_pred CCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEE
Q 005388 360 PARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIF 439 (699)
Q Consensus 360 PGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~~G~vVIl 439 (699)
|||||||+++.||+.|+|..+++|.+ -....|... ..++....++.++..+.-+...+ +...+.++.+
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~-----i~~~~g~si-~~i~~~~G~~~fr~~E~~~l~~l------~~~~~~VIa~ 68 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDE-----IEERTGMSI-SEIFAEEGEEAFRELESEALREL------LKENNCVIAC 68 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHH-----HHHHHTSHH-HHHHHHHHHHHHHHHHHHHHHHH------HCSSSEEEEE
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHH-----HHHHhCCcH-HHHHHcCChHHHHHHHHHHHHHH------hccCcEEEeC
Confidence 79999999999999999887665544 333444222 23444445555555443333222 2222333333
Q ss_pred eC-CCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCCh-HHHHHHHHHHHHhhhhh
Q 005388 440 DA-TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNRLANYEKV 512 (699)
Q Consensus 440 DA-tn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~-e~al~d~~~Ri~~y~~~ 512 (699)
-+ +-...+.|+.++ ....++||.. +.+.+.+|+..+.. +|-+.+. .. +...+.+.+|.+.|++.
T Consensus 69 GGG~~~~~~~~~~L~----~~g~vI~L~~---~~~~l~~Rl~~~~~-Rp~l~~~-~~~~~~~~~~~~R~~~Y~~~ 134 (158)
T PF01202_consen 69 GGGIVLKEENRELLK----ENGLVIYLDA---DPEELAERLRARDN-RPLLKGK-MEHEEILELLFEREPLYEQA 134 (158)
T ss_dssp -TTGGGSHHHHHHHH----HHSEEEEEE-----HHHHHHHHHHHCT-SGGTCSH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHH----hCCEEEEEeC---CHHHHHHHHhCCCC-CCCCCCC-ChHHHHHHHHHHHHHHHHhc
Confidence 22 233444555555 3456889988 79999999987765 7877765 33 34556666888888764
No 112
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.48 E-value=3e-07 Score=93.47 Aligned_cols=150 Identities=15% Similarity=0.148 Sum_probs=81.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCc-eEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHH---HHH-HHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDT-KHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNE---VAA-LAMEDMI 427 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~t-dv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~---vA~-~~l~dl~ 427 (699)
-|+++|.|||||||+|+.|++++++..+++ +++ |+....... ........+.. +-. ...+-+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~-----r~~~~~~~~-------~~~~~~~~~~~g~~~p~~~~~~~i~ 69 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDML-----RAAVKAGTE-------LGKEAKSYMDAGELVPDEIVIGLVK 69 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccH-----HHHHhccch-------HHHHHHHHHHcCCcCCHHHHHHHHH
Confidence 489999999999999999999988766554 222 442211100 00000000000 000 0011111
Q ss_pred HHHhc--CCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhccC-----------C-----
Q 005388 428 SWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQS-----------P----- 487 (699)
Q Consensus 428 ~~L~~--~G~vVIlDAtn~~~e~R~~l~el-~~~~~~v-ifIE~~c~d~e~i~rrI~~r~~~s-----------p----- 487 (699)
..+.+ .+..+|+|+...+..+.+.+.++ ...+..+ .+|.+.|+ .+++.+|+..|.... |
T Consensus 70 ~~l~~~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~ 148 (215)
T PRK00279 70 ERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVP-DEELVERLSGRRICPACGRTYHVKFNPPKVEG 148 (215)
T ss_pred HHHhccCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHhCCcccCccCCcccccCCCCCCcC
Confidence 22322 23468999977777777777665 4444332 45555666 678888887774200 0
Q ss_pred -------CCCCCCChHHHHHHHHHHHHhhhhhccCCC
Q 005388 488 -------DYAEEPDFEAGLQDFKNRLANYEKVYEPVD 517 (699)
Q Consensus 488 -------D~s~~~d~e~al~d~~~Ri~~y~~~yEpl~ 517 (699)
.... ..++..+.+.+|+..|++..+|+-
T Consensus 149 ~~~~~~~~l~~--r~dd~~~~i~~Rl~~y~~~~~~i~ 183 (215)
T PRK00279 149 KCDVCGEELIQ--RADDNEETVRKRLEVYHKQTAPLI 183 (215)
T ss_pred cCcCCCCcccC--CCCCCHHHHHHHHHHHHHhhHHHH
Confidence 0100 123334557889999988777764
No 113
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.47 E-value=5.1e-07 Score=102.93 Aligned_cols=136 Identities=17% Similarity=0.219 Sum_probs=82.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~ 432 (699)
-|+++|+|||||||+|+.|++.|++..+ +.|++++...|... ..+|....+..++.++.-+...+ .+
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~i-----d~D~~i~~~~g~~i-~~i~~~~Ge~~fr~~E~~~l~~l-------~~ 68 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFI-----DMDEEIERREGRSV-RRIFEEDGEEYFRLKEKELLREL-------VE 68 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEE-----ECcHHHHHHcCCCH-HHHHHHhhhHHHHHHHHHHHHHH-------hh
Confidence 4899999999999999999999876654 55555666555433 23455556666654443332211 11
Q ss_pred CCeEEEEeCC--CCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHhhh
Q 005388 433 GGQVGIFDAT--NSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYE 510 (699)
Q Consensus 433 ~G~vVIlDAt--n~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri~~y~ 510 (699)
....||-.+. -...+.|+.++ + + .++|+.+ +.+++.+|+..+ .+|...+. .+...+.|.+|.+.|+
T Consensus 69 ~~~~Vis~Gggvv~~~~~r~~l~---~-~-~vI~L~a---s~e~l~~Rl~~~--~RPLl~~~--~e~l~~L~~~R~~lY~ 136 (488)
T PRK13951 69 RDNVVVATGGGVVIDPENRELLK---K-E-KTLFLYA---PPEVLMERVTTE--NRPLLREG--KERIREIWERRKQFYT 136 (488)
T ss_pred cCCEEEECCCccccChHHHHHHh---c-C-eEEEEEC---CHHHHHHHhccC--CCCCcccc--HHHHHHHHHHHHHHHh
Confidence 2223322211 11234455443 2 2 3677766 689999999754 35655432 4566677888999987
Q ss_pred hhc
Q 005388 511 KVY 513 (699)
Q Consensus 511 ~~y 513 (699)
+.+
T Consensus 137 ~~~ 139 (488)
T PRK13951 137 EFR 139 (488)
T ss_pred ccc
Confidence 644
No 114
>PRK06217 hypothetical protein; Validated
Probab=98.43 E-value=3.2e-06 Score=83.83 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=70.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~ 432 (699)
-|+++|.|||||||+|++|++.|+.. +++.|++.... ....+...... +.+...+.. .+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-----~~~~D~~~~~~----~~~~~~~~~~~---~~~~~~~~~-------~~~- 62 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-----HLDTDDYFWLP----TDPPFTTKRPP---EERLRLLLE-------DLR- 62 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-----EEEcCceeecc----CCCCccccCCH---HHHHHHHHH-------HHh-
Confidence 49999999999999999999997644 45444443311 11112111111 111112111 122
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhcc---CCCCCCCCChHHHHHHHHHHHHhh
Q 005388 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ---SPDYAEEPDFEAGLQDFKNRLANY 509 (699)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~---spD~s~~~d~e~al~d~~~Ri~~y 509 (699)
.+...|+|+.... .++.+. ...+ .++||++ +.++..+|+..|... .|...+. +.+....+|.+++..|
T Consensus 63 ~~~~~vi~G~~~~--~~~~~~--~~~d-~~i~Ld~---~~~~~~~Rl~~R~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~ 133 (183)
T PRK06217 63 PREGWVLSGSALG--WGDPLE--PLFD-LVVFLTI---PPELRLERLRLREFQRYGNRILPGG-DMHKASLEFLEWAASY 133 (183)
T ss_pred cCCCEEEEccHHH--HHHHHH--hhCC-EEEEEEC---CHHHHHHHHHcCcccccCcccCCCC-CHHHHHHHHHHHHHhc
Confidence 3455788855432 222222 2223 3677776 688999999877532 1122333 5566666777777655
Q ss_pred h
Q 005388 510 E 510 (699)
Q Consensus 510 ~ 510 (699)
.
T Consensus 134 ~ 134 (183)
T PRK06217 134 D 134 (183)
T ss_pred c
Confidence 3
No 115
>KOG4609 consensus Predicted phosphoglycerate mutase [General function prediction only]
Probab=98.39 E-value=2.5e-07 Score=92.82 Aligned_cols=75 Identities=25% Similarity=0.295 Sum_probs=59.9
Q ss_pred CCcceEEecccccccccCCcccCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhhc-----CCCcc
Q 005388 558 TPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-----GFPKI 632 (699)
Q Consensus 558 ~~~~I~LVRHGeS~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i~-----g~~v~ 632 (699)
+.+.|+||||||-... +.-..||+.|++||+.+++.|++. +.+|+.|..|++.||.+||.+|+ +...+
T Consensus 93 atRhI~LiRHgeY~~~-----g~~~hLTelGReQAE~tGkRL~el--glk~d~vv~StM~RA~ETadIIlk~l~d~lk~~ 165 (284)
T KOG4609|consen 93 ATRHIFLIRHGEYHVD-----GSLEHLTELGREQAELTGKRLAEL--GLKFDKVVASTMVRATETADIILKHLPDDLKRV 165 (284)
T ss_pred hhceEEEEeccceecc-----CchhhcchhhHHHHHHHhHHHHHc--CCchhhhhhhhhhhhHHHHHHHHHhCCCcccee
Confidence 3588999999995322 112379999999999999999877 88999999999999999999992 33444
Q ss_pred ccccccc
Q 005388 633 QWRALDE 639 (699)
Q Consensus 633 ~~~~L~E 639 (699)
..+.|+|
T Consensus 166 s~~ll~E 172 (284)
T KOG4609|consen 166 SCPLLRE 172 (284)
T ss_pred ccccccc
Confidence 5566666
No 116
>PRK03839 putative kinase; Provisional
Probab=98.39 E-value=4.7e-07 Score=89.25 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=56.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~ 432 (699)
.|+++|+|||||||+|++|++.+++.. ++.|++-+.. + .. ..+....+..++.++..+.. .+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~-----id~d~~~~~~-~--~~-~~~~~~~~~~~~~l~~~~~~-------~~-- 63 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEY-----VDLTEFALKK-G--IG-EEKDDEMEIDFDKLAYFIEE-------EF-- 63 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE-----Eehhhhhhhc-C--Cc-ccCChhhhcCHHHHHHHHHH-------hc--
Confidence 589999999999999999999987654 4444442211 1 11 11111112222332222221 11
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
.+..+|+|+.+. .+...++ ++|+.+ +++++.+|+..|.
T Consensus 64 ~~~~vIidG~~~---------~l~~~~~-vi~L~~---~~~~~~~Rl~~R~ 101 (180)
T PRK03839 64 KEKNVVLDGHLS---------HLLPVDY-VIVLRA---HPKIIKERLKERG 101 (180)
T ss_pred cCCCEEEEeccc---------cccCCCE-EEEEEC---CHHHHHHHHHHcC
Confidence 244578888432 1122332 566655 6899999998764
No 117
>PRK04040 adenylate kinase; Provisional
Probab=98.35 E-value=6.1e-06 Score=82.79 Aligned_cols=39 Identities=31% Similarity=0.378 Sum_probs=31.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
+.+|+++|.|||||||+++.|++.|. ....+++.|++.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~---~~~~~~~~g~~~~ 40 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK---EDYKIVNFGDVML 40 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc---cCCeEEecchHHH
Confidence 57899999999999999999999974 2344567777744
No 118
>PRK08356 hypothetical protein; Provisional
Probab=98.34 E-value=1.5e-05 Score=79.89 Aligned_cols=121 Identities=17% Similarity=0.116 Sum_probs=62.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCCCCCCcC-CC------CHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFR-AD------NPEGMEARNEVAAL 421 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~-~~------~~~~~~~~~~vA~~ 421 (699)
..++|+++|.|||||||+|+.|++ + ++. +++.++. ++ .........+|. .. ....+....+++..
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~-~---g~~--~is~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~ 76 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE-K---GFC--RVSCSDPLID-LLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKE 76 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH-C---CCc--EEeCCCcccc-cccccccccccccHHHHhhccccccHHHHHHHHHH
Confidence 457899999999999999999963 2 443 3444443 22 111111111111 10 01111111222210
Q ss_pred ------HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhcc
Q 005388 422 ------AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ 485 (699)
Q Consensus 422 ------~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~ 485 (699)
..+.+...+.. +..+|+|+. .+...++.+... +..++||.+ +.+++.+|+..|...
T Consensus 77 ~yG~~~~~~~~~~~~~~-~~~ividG~-r~~~q~~~l~~~---~~~vi~l~~---~~~~~~~Rl~~R~~~ 138 (195)
T PRK08356 77 KYGEDILIRLAVDKKRN-CKNIAIDGV-RSRGEVEAIKRM---GGKVIYVEA---KPEIRFERLRRRGAE 138 (195)
T ss_pred hcCcHHHHHHHHHHhcc-CCeEEEcCc-CCHHHHHHHHhc---CCEEEEEEC---CHHHHHHHHHhcCCc
Confidence 00111222333 336888977 666666665542 345666665 578899999877653
No 119
>PRK06761 hypothetical protein; Provisional
Probab=98.30 E-value=1.7e-06 Score=92.02 Aligned_cols=124 Identities=15% Similarity=0.163 Sum_probs=78.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
+.+|+++|+|||||||+++.|+++|...+++++++..++. +... ......|..++.....+.....++...+ ..
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d--~~~~~~~~~eer~~~l~~~~~f~~~l~~---~~ 77 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPAD--YDGVACFTKEEFDRLLSNYPDFKEVLLK---NV 77 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchh--hccccCCCHHHHHHHHHhhhHHHHHHHH---HH
Confidence 3589999999999999999999999988888887654332 2211 1122334333334334444444433222 12
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHH-H-HcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 430 MHEGGQVGIFDATNSSRKRRNMLMK-M-AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~e-l-~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
+ ..|..+|+-..-.....|+.+.+ + ....+..++ + + +++.+++|+.+|..
T Consensus 78 ~-~~g~~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h-~--~-p~e~i~~R~~~rw~ 129 (282)
T PRK06761 78 L-KKGDYYLLPYRKIKNEFGDQFSDELFNDISKNDIY-E--L-PFDKNTELITDRWN 129 (282)
T ss_pred H-HcCCeEEEEehhhhHHHhhhhhhhhcccceeeeee-c--C-CHHHHHHHHHHHHH
Confidence 2 25888899888888888988885 2 222333333 3 3 58999999977643
No 120
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.29 E-value=3.3e-05 Score=76.08 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=29.4
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
++|++.|.+||||||+++.|+++|...|..+..+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4799999999999999999999998777766544
No 121
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.28 E-value=3.3e-06 Score=77.24 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=27.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
+|+++|.|||||||+|+.|++.++ ..+++.|++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~-----~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG-----FPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-----CEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-----CeEEEecce
Confidence 689999999999999999999975 335666774
No 122
>PRK14528 adenylate kinase; Provisional
Probab=98.28 E-value=1e-05 Score=80.80 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=76.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCCC-----CCCcCCCCHHHHHHHHHHHHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS-----ADFFRADNPEGMEARNEVAALAMEDM 426 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~~-----~~f~~~~~~~~~~~~~~vA~~~l~dl 426 (699)
.|++.|.|||||||+|+.|+++++.. +++.|+. |... ..... ..|.....- .-..+.... +
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~-----~is~~~~lr~~~-~~~~~~g~~~~~~~~~g~l----vp~~~~~~~---~ 69 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIP-----QISTGDILREAV-KNQTAMGIEAKRYMDAGDL----VPDSVVIGI---I 69 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC-----eeeCCHHHHHHh-hcCCHHHHHHHHHHhCCCc----cCHHHHHHH---H
Confidence 37889999999999999999987543 3444555 3321 11100 000000000 000111111 1
Q ss_pred HHHHhc--CCeEEEEeCCCCCHHHHHHHHHH-HcCCc-eEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHH
Q 005388 427 ISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNC-KIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDF 502 (699)
Q Consensus 427 ~~~L~~--~G~vVIlDAtn~~~e~R~~l~el-~~~~~-~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~ 502 (699)
.+.+.+ ....+|+|+--.+.++-+.+.++ ...+. .-.+|.+.|+ ++++.+|+..|..... -. ++..+.+
T Consensus 70 ~~~l~~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~-~~~~~~Rl~~R~~~~g-r~-----dd~~e~i 142 (186)
T PRK14528 70 KDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVP-DGELLKRLLGRAEIEG-RA-----DDNEATI 142 (186)
T ss_pred HHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhcCccccC-CC-----CCCHHHH
Confidence 122222 23458889865566666666655 32221 1123444455 7788888877743211 11 1223447
Q ss_pred HHHHHhhhhhccCCC
Q 005388 503 KNRLANYEKVYEPVD 517 (699)
Q Consensus 503 ~~Ri~~y~~~yEpl~ 517 (699)
.+|+..|.+...|+-
T Consensus 143 ~~Rl~~y~~~~~pv~ 157 (186)
T PRK14528 143 KNRLDNYNKKTLPLL 157 (186)
T ss_pred HHHHHHHHHHhHHHH
Confidence 889999988888774
No 123
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.27 E-value=3e-05 Score=83.09 Aligned_cols=130 Identities=12% Similarity=0.140 Sum_probs=80.9
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCC-CC-------CCCc-------CCCCH----
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVN-QS-------ADFF-------RADNP---- 409 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~-~~-------~~f~-------~~~~~---- 409 (699)
..|++|+++|.+||||||+|++|+++|+. . .+++.|.+|+...... .+ ..|. .+..+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~---~-~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l 165 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGI---R-SVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVI 165 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCC---C-EEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhh
Confidence 47899999999999999999999999853 2 3566677775432210 00 0110 01111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhcc
Q 005388 410 EGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ 485 (699)
Q Consensus 410 ~~~~~~~~vA~~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~ 485 (699)
.+|..-.+.....++.++.-..+.|..+|+-+.+..++.-+... .+. -.++.+-|...|++.+++|...|.+.
T Consensus 166 ~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~--~~~-~~~i~~~l~i~~ee~h~~RF~~R~~~ 238 (301)
T PRK04220 166 YGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKY--LEN-PNVFMFVLTLSDEEAHKARFYARARV 238 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhh--hcC-CCEEEEEEEECCHHHHHHHHHHHHhh
Confidence 12333333333335555555555799999999999987643321 222 22344556778999999999888763
No 124
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.27 E-value=4.6e-06 Score=82.88 Aligned_cols=149 Identities=14% Similarity=0.106 Sum_probs=81.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHH------H
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED------M 426 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~d------l 426 (699)
+|.++|.|||||||+|+.|++.|...+.++.+++.|+|-+-........+.++....-.+..+.+....+.+. .
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 5889999999999999999999998888999999999955221111111222222111122222222221110 0
Q ss_pred HHH-----------HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHH--HHHHHHHHhhccCCCCCCCC
Q 005388 427 ISW-----------MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRD--IIERNIRLKIQQSPDYAEEP 493 (699)
Q Consensus 427 ~~~-----------L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e--~i~rrI~~r~~~spD~s~~~ 493 (699)
+++ ......++|+++.+.... .++++. ++ .+||++ + .+ .+.||+.+-... .+.
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~---~l~~~~--d~-~I~vd~--~-~~~~rl~rri~RD~~~----rg~- 146 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNE---RLRSLL--DI-RVAVSG--G-VHLNRLLRRVVRDIQF----RGY- 146 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCH---hHHhhc--CE-EEEEeC--C-ccHHHHHHHHHHhHHh----hCC-
Confidence 000 001346899999887632 344442 22 246665 3 34 356666543322 233
Q ss_pred ChHHHHHHHHHHHHhhhhhccCC
Q 005388 494 DFEAGLQDFKNRLANYEKVYEPV 516 (699)
Q Consensus 494 d~e~al~d~~~Ri~~y~~~yEpl 516 (699)
+.+..+.. ..+++.++..|+|-
T Consensus 147 ~~~~~i~~-~~~~~~~~~~~~~~ 168 (179)
T cd02028 147 SAELTILM-WPSVPSGEEFIIPP 168 (179)
T ss_pred CHHHHhhh-cccccCchhhcCCC
Confidence 55666555 45666666666553
No 125
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.27 E-value=5.9e-05 Score=75.21 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=28.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceE
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv 384 (699)
+.+|++.|.+||||||+++.|+++|...|..+.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~ 36 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVF 36 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence 5789999999999999999999999776644433
No 126
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.25 E-value=1.2e-05 Score=79.05 Aligned_cols=26 Identities=23% Similarity=0.100 Sum_probs=23.4
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.+|+++|.|||||||+++.|+..+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 37999999999999999999998764
No 127
>PRK13975 thymidylate kinase; Provisional
Probab=98.24 E-value=2.5e-05 Score=77.69 Aligned_cols=27 Identities=33% Similarity=0.333 Sum_probs=25.0
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
+++|++.|++||||||+|+.|+++|+.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999999984
No 128
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.24 E-value=6.5e-06 Score=81.89 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=22.4
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.+|+++|.+|||||||++.|+..+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999988754
No 129
>PRK07667 uridine kinase; Provisional
Probab=98.23 E-value=1.8e-05 Score=79.35 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=38.6
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
..+++|.|+|.|||||||+|+.|++.|+..+.++.+++.|+|
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 355899999999999999999999999988999999999886
No 130
>PRK08233 hypothetical protein; Provisional
Probab=98.23 E-value=1.5e-05 Score=77.93 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
++++|++.|.|||||||+|+.|++.|+
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 358999999999999999999999875
No 131
>PLN02674 adenylate kinase
Probab=98.22 E-value=8.8e-06 Score=84.93 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=82.4
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHH-------HHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-------EVAALAM 423 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~-------~vA~~~l 423 (699)
+.-|++.|.|||||||+|+.|++++++.. ++.|+.-|........ + +....+.+. ++...++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~h-----is~GdllR~~i~~~s~--~----g~~i~~~~~~G~lvpd~iv~~lv 99 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCH-----LATGDMLRAAVAAKTP--L----GIKAKEAMDKGELVSDDLVVGII 99 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcE-----EchhHHHHHHHhccCh--h----hHHHHHHHHcCCccCHHHHHHHH
Confidence 45688999999999999999999977655 4444443322111000 0 010000000 1111111
Q ss_pred HHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhcc---CCCC-------
Q 005388 424 EDMISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQ---SPDY------- 489 (699)
Q Consensus 424 ~dl~~~L~--~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~v-ifIE~~c~d~e~i~rrI~~r~~~---spD~------- 489 (699)
. +.|. ..+..+|+|+.-.+..+-+.+.++ ...++.+ .+|++.|+ .+++.+|+..|... ...|
T Consensus 100 ~---~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~-~~~l~~Rl~gR~~~~~~g~~yn~~~~pp 175 (244)
T PLN02674 100 D---EAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAID-DAILEERITGRWIHPSSGRTYHTKFAPP 175 (244)
T ss_pred H---HHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhccccccccCCccccccCCC
Confidence 1 1222 224679999988888887777765 3333222 23444454 78888888776321 0000
Q ss_pred --------CC----CCChHHHHHHHHHHHHhhhhhccCCC
Q 005388 490 --------AE----EPDFEAGLQDFKNRLANYEKVYEPVD 517 (699)
Q Consensus 490 --------s~----~~d~e~al~d~~~Ri~~y~~~yEpl~ 517 (699)
.+ . ..++-.+-..+|++.|.+.-.|+-
T Consensus 176 ~~~~~~~~~g~~L~~-R~DD~~e~i~~RL~~Y~~~t~pv~ 214 (244)
T PLN02674 176 KVPGVDDVTGEPLIQ-RKDDTAAVLKSRLEAFHKQTEPVI 214 (244)
T ss_pred cccCcccccCCcccc-CCCCCHHHHHHHHHHHHHHhHHHH
Confidence 00 0 123334557889999988777764
No 132
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.21 E-value=1.8e-05 Score=74.31 Aligned_cols=145 Identities=16% Similarity=0.137 Sum_probs=75.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~ 432 (699)
+|+++|.|||||||+|+.|++.++...++.+.+....+.+.... . .... ...+....... + +..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~~~------~--~~~~----~i~~~l~~~~~---~-~~~ 64 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASE------V--AAIP----EVRKALDERQR---E-LAK 64 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHHHH------h--cccH----hHHHHHHHHHH---H-Hhh
Confidence 58999999999999999999998765555543322111110000 0 0000 01111111111 1 222
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHhh-hh
Q 005388 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY-EK 511 (699)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri~~y-~~ 511 (699)
+..+|+|+...... +....-.++||.+ ++++..+|+..|.... -.+. +++++.+.+.+|-+.. +.
T Consensus 65 -~~~~Vidg~~~~~~-------~~~~~~~~i~l~~---~~~~r~~R~~~r~~~~--~~~~-~~~~~~~~~~~~d~~~~~~ 130 (147)
T cd02020 65 -KPGIVLEGRDIGTV-------VFPDADLKIFLTA---SPEVRAKRRAKQLQAK--GEGV-DLEEILAEIIERDERDSTR 130 (147)
T ss_pred -CCCEEEEeeeeeeE-------EcCCCCEEEEEEC---CHHHHHHHHHHHHHhC--CCCC-CHHHHHHHHHHHHHHhhhc
Confidence 33567787653210 1111223455554 6787777776653321 1234 7888888888875543 44
Q ss_pred hccCCCCCCceEEeec
Q 005388 512 VYEPVDEGSYIKMIDM 527 (699)
Q Consensus 512 ~yEpl~e~~yik~in~ 527 (699)
.+.|.+...|--+||.
T Consensus 131 ~~~~~~~~~~dl~i~~ 146 (147)
T cd02020 131 YVAPLKLAEDAIVIDT 146 (147)
T ss_pred ccccccCCCCcEEEeC
Confidence 4456554466666664
No 133
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.20 E-value=5.6e-06 Score=85.63 Aligned_cols=119 Identities=21% Similarity=0.200 Sum_probs=63.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHH--------HHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR--------NEVAAL 421 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~--------~~vA~~ 421 (699)
.|+-|++.|.|||||||+|+.|++++++.. ++.|+.-+........ + .......+ ..++..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~-----is~gdllr~~~~~~t~--l----g~~i~~~~~~G~lvpd~iv~~l 73 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKH-----INMGNILREEIKAKTT--I----GKEIQKVVTSGNLVPDNLVIAI 73 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcE-----EECChHHHHHhhcCCh--H----HHHHHHHHHcCCcCCHHHHHHH
Confidence 345599999999999999999999977655 4444443322111000 0 00000000 011111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 422 ~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
+.+.+.+.+...+...|+|+.--+..++..+.+... . ..+|...++ .+++.+|+..|.
T Consensus 74 v~~~l~~~~~~~~~g~iLDGfPRt~~Qa~~l~~~~~--~-~~vi~l~~~-~~~~~~Rl~~Rr 131 (229)
T PTZ00088 74 VKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKITN--I-DLFVNIYLP-RNILIKKLLGRR 131 (229)
T ss_pred HHHHHHhhccccCceEEEecCCCCHHHHHHHHhcCC--C-CEEEEEeCC-HHHHHHHHHcCc
Confidence 222222212234667899997667777776654422 1 223444455 667777776663
No 134
>PRK02496 adk adenylate kinase; Provisional
Probab=98.19 E-value=1.1e-05 Score=79.76 Aligned_cols=136 Identities=16% Similarity=0.248 Sum_probs=73.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCCCCCCcCCCCHHHHHHH-------HHHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAME 424 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~~~~~~~~-------~~vA~~~l~ 424 (699)
-|+|.|.|||||||+|+.|++.++... ++.|+. |+.... ... . .......+ .++...++
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~-----i~~~~~~~~~~~~-~~~--~----g~~~~~~~~~g~~~~~~~~~~~l- 69 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPH-----ISTGDILRQAIKE-QTP--L----GIKAQGYMDKGELVPDQLVLDLV- 69 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE-----EEhHHHHHHHHhc-cCh--h----HHHHHHHHHCCCccCHHHHHHHH-
Confidence 388899999999999999999876443 444444 332211 000 0 00000000 01111111
Q ss_pred HHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHH-HcCC---ceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHH
Q 005388 425 DMISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGN---CKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAG 498 (699)
Q Consensus 425 dl~~~L~~--~G~vVIlDAtn~~~e~R~~l~el-~~~~---~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~a 498 (699)
...+.+ ....+|+|+.-.+..+...+.++ ...+ ..++++.+ +++++.+|+..|.+ +| +.+
T Consensus 70 --~~~l~~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~---~~~~~~~Rl~~R~~--~d-----d~~-- 135 (184)
T PRK02496 70 --QERLQQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDV---PDDVVVERLLARGR--KD-----DTE-- 135 (184)
T ss_pred --HHHHhCcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeC---CHHHHHHHHhcCCC--CC-----CCH--
Confidence 122221 23457889988877776666655 2222 23344444 58888999987743 22 222
Q ss_pred HHHHHHHHHhhhhhccCC
Q 005388 499 LQDFKNRLANYEKVYEPV 516 (699)
Q Consensus 499 l~d~~~Ri~~y~~~yEpl 516 (699)
+.+.+|+..|++.-+|+
T Consensus 136 -~~~~~r~~~y~~~~~~v 152 (184)
T PRK02496 136 -EVIRRRLEVYREQTAPL 152 (184)
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 24567888887744443
No 135
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.17 E-value=2.3e-05 Score=76.88 Aligned_cols=26 Identities=27% Similarity=0.184 Sum_probs=23.2
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.+|+++|.+||||||+++.|++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 47999999999999999999987654
No 136
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.15 E-value=7.9e-06 Score=79.06 Aligned_cols=36 Identities=31% Similarity=0.389 Sum_probs=28.4
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
++|+++|.|||||||+|+.|++.|+.. +++.|++.+
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~-----~~~~~~~~~ 36 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLK-----LISAGDIFR 36 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCc-----eecHHHHHH
Confidence 479999999999999999999987644 455555433
No 137
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.15 E-value=2e-05 Score=78.96 Aligned_cols=27 Identities=33% Similarity=0.305 Sum_probs=24.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.+.+|+++|.+||||||+++.|++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456899999999999999999999864
No 138
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.13 E-value=0.00022 Score=70.83 Aligned_cols=34 Identities=32% Similarity=0.374 Sum_probs=29.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceE
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv 384 (699)
+++|++.|.|||||||+++.|++.|...|..+.+
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~ 36 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLF 36 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 5789999999999999999999999887766543
No 139
>PRK04182 cytidylate kinase; Provisional
Probab=98.12 E-value=3.6e-06 Score=81.97 Aligned_cols=29 Identities=31% Similarity=0.340 Sum_probs=25.2
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCC
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi 380 (699)
++|+++|.|||||||+|+.|++.|++..+
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~i 29 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHV 29 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEe
Confidence 47999999999999999999999775443
No 140
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.11 E-value=1.1e-05 Score=78.74 Aligned_cols=127 Identities=22% Similarity=0.278 Sum_probs=68.3
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCc-eEeehhhHHHHhhCCCCCC-CC---cCCC--CHHHHHHHHHHHHHHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDT-KHFNVGKYRRLKHGVNQSA-DF---FRAD--NPEGMEARNEVAALAME 424 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~t-dv~~~gdyRr~~~g~~~~~-~f---~~~~--~~~~~~~~~~vA~~~l~ 424 (699)
++|.+.|+|||||||+|+.|+++++...+.+ ++| |......+-+. +| .+.+ -+.....++.
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iF-----R~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~------- 68 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIF-----REMARERGMSLEEFSRYAEEDPEIDKEIDRRQK------- 68 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHH-----HHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHH-------
Confidence 3688999999999999999999987654332 223 65433222221 11 1111 1111111111
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHH
Q 005388 425 DMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (699)
Q Consensus 425 dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~ 504 (699)
-+...|.+|+= .+...|.......++ +|+.. +.++..+||..|.. . +.+++++.-.+
T Consensus 69 ----e~a~~~nvVle-------grLA~Wi~k~~adlk-I~L~A---pl~vRa~Ria~REg-------i-~~~~a~~~~~~ 125 (179)
T COG1102 69 ----ELAKEGNVVLE-------GRLAGWIVREYADLK-IWLKA---PLEVRAERIAKREG-------I-DVDEALAETVE 125 (179)
T ss_pred ----HHHHcCCeEEh-------hhhHHHHhccccceE-EEEeC---cHHHHHHHHHHhcC-------C-CHHHHHHHHHH
Confidence 12224555552 233333322223443 34443 58999999988753 3 67777776666
Q ss_pred HHHhhhhhc
Q 005388 505 RLANYEKVY 513 (699)
Q Consensus 505 Ri~~y~~~y 513 (699)
|=...++.|
T Consensus 126 RE~se~kRY 134 (179)
T COG1102 126 REESEKKRY 134 (179)
T ss_pred HHHHHHHHH
Confidence 554444444
No 141
>PRK13808 adenylate kinase; Provisional
Probab=98.11 E-value=7.7e-06 Score=88.81 Aligned_cols=146 Identities=16% Similarity=0.240 Sum_probs=75.4
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCCCCCCcCCCCHHHHHHH-------HHHHHHHHHH
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMED 425 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~~~~~~~~-------~~vA~~~l~d 425 (699)
|+|.|.|||||||+|+.|++.++... ++.|+. |... ...... .......+ .++...++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~-----is~gdlLR~~i-~~~s~~------g~~~~~~~~~G~lVPdeiv~~li~- 69 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQ-----LSTGDMLRAAV-AAGTPV------GLKAKDIMASGGLVPDEVVVGIIS- 69 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce-----ecccHHHHHHh-hcCChh------hHHHHHHHHcCCCCCHHHHHHHHH-
Confidence 78899999999999999999976544 443443 3311 100000 00000000 011111111
Q ss_pred HHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhccCCC-CCCCCChHHHHH
Q 005388 426 MISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPD-YAEEPDFEAGLQ 500 (699)
Q Consensus 426 l~~~L~--~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~v-ifIE~~c~d~e~i~rrI~~r~~~spD-~s~~~d~e~al~ 500 (699)
+.|. .....+|+|+--.+.++.+.+.++ ...++.+ ++|++.| +++++.+|+..|...... .... ..++-.+
T Consensus 70 --e~l~~~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDV-p~evll~Rl~~R~~~~~~rg~~~-R~DD~~E 145 (333)
T PRK13808 70 --DRIEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRV-NEGALLARVETRVAEMRARGEEV-RADDTPE 145 (333)
T ss_pred --HHHhcccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEEC-CHHHHHHHHHcCcccccccCCcc-CCCCCHH
Confidence 1121 123458889866666777666655 3222211 2333444 578888888776321000 0000 1223345
Q ss_pred HHHHHHHhhhhhccCC
Q 005388 501 DFKNRLANYEKVYEPV 516 (699)
Q Consensus 501 d~~~Ri~~y~~~yEpl 516 (699)
.+.+|+..|+..-+|+
T Consensus 146 ~i~kRL~~Y~~~t~PL 161 (333)
T PRK13808 146 VLAKRLASYRAQTEPL 161 (333)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 6788999998876665
No 142
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.09 E-value=2.8e-05 Score=77.86 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
++.+|+|+|.||||||||+++|.+.+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 578999999999999999999988753
No 143
>PLN02459 probable adenylate kinase
Probab=98.09 E-value=2.8e-05 Score=81.81 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=64.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCCCCCCcCCCCHHHHHHHH-------HHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN-------EVAAL 421 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~~~~~~~~~-------~vA~~ 421 (699)
+++.|++.|.|||||||+|+.|++++++.. ++.|+. |+.... .. .+ .......+. ++...
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~-----is~gdllR~ei~~-~t--~l----g~~i~~~~~~G~lVPdeiv~~ 95 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPH-----IATGDLVREEIKS-SG--PL----GAQLKEIVNQGKLVPDEIIFS 95 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcE-----EeCcHHHHHHHhc-cc--hh----HHHHHHHHHcCCccCHHHHHH
Confidence 456688899999999999999999977554 343443 332210 00 00 011111010 11111
Q ss_pred HHHHHHHHHh----cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 422 AMEDMISWMH----EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 422 ~l~dl~~~L~----~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
++. ..|. .....+|+|+.--+..+-+.+..+.... .+++++ |+ .+++.+|+..|.
T Consensus 96 ll~---~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id-~Vi~L~--v~-d~~l~~Rl~gR~ 154 (261)
T PLN02459 96 LLS---KRLEAGEEEGESGFILDGFPRTVRQAEILEGVTDID-LVVNLK--LR-EEVLVEKCLGRR 154 (261)
T ss_pred HHH---HHHhcccccCCceEEEeCCCCCHHHHHHHHhcCCCC-EEEEEE--CC-HHHHHHHhhccc
Confidence 111 2222 1246799999888887777776553222 244444 55 677788887663
No 144
>PRK14526 adenylate kinase; Provisional
Probab=98.08 E-value=8.7e-06 Score=83.20 Aligned_cols=143 Identities=16% Similarity=0.233 Sum_probs=77.3
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCCCCCCcCCCCHHHHHHH-------HHHHHHHHHH
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMED 425 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~~~~~~~~-------~~vA~~~l~d 425 (699)
|+++|.|||||||+|+.|++.+++.. ++.|+. |+.... ... . .......+ .+++...+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~-----is~G~llr~~~~~-~t~--~----g~~i~~~~~~g~lvpd~~~~~lv~- 69 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYH-----ISTGDLFRENILN-STP--L----GKEIKQIVENGQLVPDSITIKIVE- 69 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce-----eecChHHHHhccc-CCh--h----hHHHHHHHHcCccCChHHHHHHHH-
Confidence 77899999999999999999876544 334444 332111 000 0 00001100 011111111
Q ss_pred HHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCC---CC-----------
Q 005388 426 MISWMHE--GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSP---DY----------- 489 (699)
Q Consensus 426 l~~~L~~--~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~sp---D~----------- 489 (699)
+.|.. ....+|+|+.--+.++-+.+.++.. ... +|++.|+ ++++.+|+..|..... .|
T Consensus 70 --~~l~~~~~~~g~ilDGfPR~~~Qa~~l~~~~~-~~~--vi~l~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~ 143 (211)
T PRK14526 70 --DKINTIKNNDNFILDGFPRNINQAKALDKFLP-NIK--IINFLID-EELLIKRLSGRRICKSCNNIFNIYTLPTKEKG 143 (211)
T ss_pred --HHHhcccccCcEEEECCCCCHHHHHHHHHhcC-CCE--EEEEECC-HHHHHHHHHCCCcccccCCccccccCCCCccC
Confidence 22221 2456788987777776666655422 122 4444555 7888888877642110 00
Q ss_pred ---------CCCCChHHHHHHHHHHHHhhhhhccCCC
Q 005388 490 ---------AEEPDFEAGLQDFKNRLANYEKVYEPVD 517 (699)
Q Consensus 490 ---------s~~~d~e~al~d~~~Ri~~y~~~yEpl~ 517 (699)
. . ..++..+-+.+|++.|.+.-.|+-
T Consensus 144 ~~~~~~~~l~-~-R~DD~~e~i~~Rl~~y~~~t~pv~ 178 (211)
T PRK14526 144 ICDVCKGDLY-Q-RKDDKEESLKTRLQEYKLQTKPLI 178 (211)
T ss_pred cCCCCCCeee-c-cCCCCHHHHHHHHHHHHHhhhHHH
Confidence 0 1 223344567889999988877764
No 145
>PRK13973 thymidylate kinase; Provisional
Probab=98.08 E-value=0.00026 Score=72.19 Aligned_cols=125 Identities=15% Similarity=0.060 Sum_probs=69.0
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee-------hhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHH-HH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN-------VGKYRRLKHGVNQSADFFRADNPEGMEARNEVAA-LA 422 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~-------~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~-~~ 422 (699)
+++|++-|.+||||||.++.|+++|...|+++.... ++..|+...+... ..+ .......+....+ ..
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~-~~~----~~~~~~ll~~a~r~~~ 77 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAA-ELY----GPRMEALLFAAARDDH 77 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCc-cCC----CHHHHHHHHHHHHHHH
Confidence 578999999999999999999999988887776552 3334443332111 111 1222111111111 11
Q ss_pred HHH-HHHHHhcCCeEEEEeCCCCC------------HHHHHHHHHHH-c--CCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 423 MED-MISWMHEGGQVGIFDATNSS------------RKRRNMLMKMA-E--GNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 423 l~d-l~~~L~~~G~vVIlDAtn~~------------~e~R~~l~el~-~--~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
+.+ +...|. .|.+||.|--..+ .+....+.... . .---++|++| ++++..+|+..|..
T Consensus 78 ~~~~i~~~l~-~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv---~~e~~~~Rl~~R~~ 151 (213)
T PRK13973 78 VEEVIRPALA-RGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDI---PAEVGLERAAKRRG 151 (213)
T ss_pred HHHHHHHHHH-CCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeC---CHHHHHHHHHhccC
Confidence 122 223343 5889998865522 11222222221 1 1223566766 68999999987753
No 146
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.06 E-value=3e-05 Score=78.65 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.1
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..+.+|+++|.||+|||||+++|.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 36788999999999999999999865
No 147
>PRK14529 adenylate kinase; Provisional
Probab=98.06 E-value=2.6e-05 Score=80.43 Aligned_cols=114 Identities=13% Similarity=0.211 Sum_probs=64.6
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCc-eEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHH-------HHHHHHHHHH
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDT-KHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMED 425 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~gi~t-dv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~-------~~vA~~~l~d 425 (699)
|+|.|.|||||||+|+.|+++++..++++ +++ |....+ ...+ .....+.+ .++... -
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdll-----r~~i~~---~t~l----g~~i~~~i~~G~lvpdei~~~---l 67 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIF-----REHIGG---GTEL----GKKAKEYIDRGDLVPDDITIP---M 67 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhh-----hhhccC---CChH----HHHHHHHHhccCcchHHHHHH---H
Confidence 78899999999999999999988666543 222 331110 0000 11111101 011111 1
Q ss_pred HHHHHhcC-CeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhh
Q 005388 426 MISWMHEG-GQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 426 l~~~L~~~-G~vVIlDAtn~~~e~R~~l~el-~~~~~~v-ifIE~~c~d~e~i~rrI~~r~ 483 (699)
+.+.|.+. ....|+|+.--+..+-+.+.++ .+.++.+ .+|+..|+ .+++.+|+..|.
T Consensus 68 v~~~l~~~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~-~~~l~~Rl~~R~ 127 (223)
T PRK14529 68 ILETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLP-REVAKNRIMGRR 127 (223)
T ss_pred HHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHhhCCc
Confidence 22333322 4569999999998888777765 3323221 23444455 688888887763
No 148
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.06 E-value=6.6e-05 Score=80.31 Aligned_cols=106 Identities=14% Similarity=0.253 Sum_probs=62.4
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L 430 (699)
..+|+++|++||||||+++.|+. +++.. ++ .. .. ..+.+++..+... .
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~~-~g~~~-----~d--~~-----------------~~---~L~~~l~~~~~~~---~- 53 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALED-LGYYC-----VD--NL-----------------PP---SLLPKLVELLAQS---G- 53 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH-cCCeE-----EC--Cc-----------------CH---HHHHHHHHHHHhc---C-
Confidence 35899999999999999999973 23321 11 00 01 1111222211110 0
Q ss_pred hcCCeEEEEeCCCCC--HHHHHHHHHHHcCCc--eEEEEEEEeCCHHHHHHHHHHhhccCCCCCC
Q 005388 431 HEGGQVGIFDATNSS--RKRRNMLMKMAEGNC--KIIFLETICNDRDIIERNIRLKIQQSPDYAE 491 (699)
Q Consensus 431 ~~~G~vVIlDAtn~~--~e~R~~l~el~~~~~--~vifIE~~c~d~e~i~rrI~~r~~~spD~s~ 491 (699)
......+++|..+.. ++.++.+..+.+.++ .++|+++ +.+++.+|+....+.+|...+
T Consensus 54 ~~~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a---~~e~L~~Rl~~~rr~RPLl~~ 115 (288)
T PRK05416 54 GIRKVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDA---SDEVLIRRYSETRRRHPLSGD 115 (288)
T ss_pred CCCCeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEEC---CHHHHHHHHhhcccCCCccCC
Confidence 013468889998763 356667777754454 4566666 689999999765444665543
No 149
>PRK06547 hypothetical protein; Provisional
Probab=98.01 E-value=4.1e-05 Score=75.82 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=26.1
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
..+.+|+++|.|||||||+|+.|++.++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~ 42 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQ 42 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 467899999999999999999999986543
No 150
>PRK07261 topology modulation protein; Provisional
Probab=98.00 E-value=2.3e-05 Score=77.25 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
-|+++|.|||||||+|++|++.++..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~ 27 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCP 27 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 38999999999999999999886543
No 151
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.96 E-value=5.5e-05 Score=76.40 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=32.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
++.+|.++|.|||||||+|+.|++.+. +..+.+++.|+|
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCcc
Confidence 688999999999999999999999873 345566777766
No 152
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.96 E-value=0.00017 Score=70.83 Aligned_cols=135 Identities=19% Similarity=0.311 Sum_probs=78.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHh-hcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 431 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~-~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~ 431 (699)
||+=++-+|+||||+|.+|+.-++ |-.+..|-+... ++ . +.++.+++ -|.
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~k--~~----------------~-------~f~~~~l~----~L~ 51 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGEWGHVQNDNITGK--RK----------------P-------KFIKAVLE----LLA 51 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCCC--CH----------------H-------HHHHHHHH----HHh
Confidence 355678899999999999999998 877666555221 11 1 11222222 121
Q ss_pred -cCCeEEEEeCCCCCHHHHHHHHHH---HcC-------CceEEEEEEEeCC-HH----HHHHHHHHhhccCCCCCCCCCh
Q 005388 432 -EGGQVGIFDATNSSRKRRNMLMKM---AEG-------NCKIIFLETICND-RD----IIERNIRLKIQQSPDYAEEPDF 495 (699)
Q Consensus 432 -~~G~vVIlDAtn~~~e~R~~l~el---~~~-------~~~vifIE~~c~d-~e----~i~rrI~~r~~~spD~s~~~d~ 495 (699)
..-.+||+|=.|.....|+++.+. .+. +++++.|...-++ .+ +...|+..|.-.....+.. ..
T Consensus 52 ~~~~~vViaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~-~~ 130 (168)
T PF08303_consen 52 KDTHPVVIADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKAD-SK 130 (168)
T ss_pred hCCCCEEEEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecC-CC
Confidence 357799999999999999988876 233 6666666653332 33 3455665553211122211 10
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCC
Q 005388 496 EAGLQDFKNRLANYEKVYEPVDEG 519 (699)
Q Consensus 496 e~al~d~~~Ri~~y~~~yEpl~e~ 519 (699)
-.+....=+..+.+.|||++..
T Consensus 131 --~~~~~~~Im~gFi~rfep~~~~ 152 (168)
T PF08303_consen 131 --DEKKVEGIMEGFIKRFEPVDPD 152 (168)
T ss_pred --CHHHHHHHHHHHHHhcCCCCCC
Confidence 1122333445556668888753
No 153
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.95 E-value=0.00016 Score=69.27 Aligned_cols=131 Identities=18% Similarity=0.273 Sum_probs=70.6
Q ss_pred EEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHH------HHHHHHHHH-HH
Q 005388 356 LVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNE------VAALAMEDM-IS 428 (699)
Q Consensus 356 mvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~------vA~~~l~dl-~~ 428 (699)
+.|-|||||||+|+.|+++++. ..++.++.-|..... .++.+...... +-...+-++ ..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~-----~~is~~~llr~~~~~---------~s~~g~~i~~~l~~g~~vp~~~v~~ll~~ 66 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL-----VHISVGDLLREEIKS---------DSELGKQIQEYLDNGELVPDELVIELLKE 66 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS-----EEEEHHHHHHHHHHT---------TSHHHHHHHHHHHTTSS--HHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc-----ceechHHHHHHHHhh---------hhHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 5799999999999999999654 346665553322110 11111111000 001111111 12
Q ss_pred HHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHH
Q 005388 429 WMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (699)
Q Consensus 429 ~L~--~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~v-ifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~ 504 (699)
.+. ......|+|+--.+.++-+.+.++ ...++.+ .+|.+.|+ .+.+.+|+.. + +. +.+.+
T Consensus 67 ~l~~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~-~~~~~~R~~~---------d--~~----~~i~~ 130 (151)
T PF00406_consen 67 RLEQPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCP-DETLIERLSQ---------D--NE----EVIKK 130 (151)
T ss_dssp HHHSGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE---HHHHHHHHHT---------G--SH----HHHHH
T ss_pred HHhhhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccc-hhhhhhhccc---------C--CH----HHHHH
Confidence 232 236778999988887776666664 2234433 56666677 5677777754 1 12 23678
Q ss_pred HHHhhhhhccCC
Q 005388 505 RLANYEKVYEPV 516 (699)
Q Consensus 505 Ri~~y~~~yEpl 516 (699)
|++.|++.-+|+
T Consensus 131 Rl~~y~~~~~~i 142 (151)
T PF00406_consen 131 RLEEYRENTEPI 142 (151)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887765554
No 154
>PRK08118 topology modulation protein; Reviewed
Probab=97.93 E-value=6.7e-05 Score=73.82 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=25.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCce
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~gi~td 383 (699)
|+++|.|||||||+|++|++.++...++.|
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 899999999999999999999765444443
No 155
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.89 E-value=0.00012 Score=72.89 Aligned_cols=141 Identities=18% Similarity=0.237 Sum_probs=77.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHH-------HHHHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMED 425 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~-------~~vA~~~l~d 425 (699)
-|++.|.|||||||+|++|+++++-..++ .|++=+ .+..... +...+....+ ..+...++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hls-----tgd~~r--~~~~~~t----~lg~~~k~~i~~g~lv~d~i~~~~v~- 69 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLD-----TGDILR--AAIAERT----ELGEEIKKYIDKGELVPDEIVNGLVK- 69 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc-----HhHHhH--hhhccCC----hHHHHHHHHHHcCCccchHHHHHHHH-
Confidence 38899999999999999999996654444 333311 1110100 0011111100 011212222
Q ss_pred HHHHHhcC--CeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHH
Q 005388 426 MISWMHEG--GQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 501 (699)
Q Consensus 426 l~~~L~~~--G~vVIlDAtn~~~e~R~~l~el-~~~~~~v-ifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d 501 (699)
.++.+. ...+|+|..-.+...-+.+..+ .+.+.+. ..+++.+++ +.+..|+..|.. ++ + | ..+.
T Consensus 70 --~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~-~~~~~r~~~r~~-r~---d--d---~~~~ 137 (178)
T COG0563 70 --ERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPE-ELLLERLLGRRV-RE---D--D---NEET 137 (178)
T ss_pred --HHHHhhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCH-HHHHHHHhCccc-cc---c--C---CHHH
Confidence 223322 2279999988887776666655 4434333 345566665 777888866532 11 1 1 2234
Q ss_pred HHHHHHhhhhhccCCC
Q 005388 502 FKNRLANYEKVYEPVD 517 (699)
Q Consensus 502 ~~~Ri~~y~~~yEpl~ 517 (699)
+.+|+..|.+.-.|+-
T Consensus 138 ~~~R~~~y~~~~~pli 153 (178)
T COG0563 138 VKKRLKVYHEQTAPLI 153 (178)
T ss_pred HHHHHHHHHhcccchh
Confidence 6788888887777764
No 156
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.89 E-value=1.5e-05 Score=72.91 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=21.1
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q 005388 354 IVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L 375 (699)
|+++|.|||||||+|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997
No 157
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.89 E-value=7.5e-05 Score=74.78 Aligned_cols=150 Identities=18% Similarity=0.250 Sum_probs=81.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCC----ceEeehhhHHHHh-----hCC-CCCCCCcCCCCHHHHHHHHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHD----TKHFNVGKYRRLK-----HGV-NQSADFFRADNPEGMEARNEVAALA 422 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~----tdv~~~gdyRr~~-----~g~-~~~~~f~~~~~~~~~~~~~~vA~~~ 422 (699)
||-++|.|||||||+|++|+..|+..++. ..++..++|.... .+. .....|..+ ..-.+..+.+....+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p-~a~d~~~l~~~l~~L 79 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHP-DAFDFDLLKEDLKAL 79 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSG-GGBSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCc-cccCHHHHHHHHHHH
Confidence 68899999999999999999999987776 4455555542211 111 111122111 111122332222221
Q ss_pred HHHH------HHH----------HhcCCeEEEEeCCCCC-HHHHHHHHHHHcCCceEEEEEEEeCCHH-HHHHHHHHhhc
Q 005388 423 MEDM------ISW----------MHEGGQVGIFDATNSS-RKRRNMLMKMAEGNCKIIFLETICNDRD-IIERNIRLKIQ 484 (699)
Q Consensus 423 l~dl------~~~----------L~~~G~vVIlDAtn~~-~e~R~~l~el~~~~~~vifIE~~c~d~e-~i~rrI~~r~~ 484 (699)
.+.- ++| ......+||+++.+.. .+. ++++. ++ .+||++ +.+ .+.|||.+...
T Consensus 80 ~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~---l~~l~--D~-~ifld~---~~~~~l~Rri~RD~~ 150 (194)
T PF00485_consen 80 KNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEE---LRDLF--DL-KIFLDA---DEDLRLERRIQRDVA 150 (194)
T ss_dssp HTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHC---HGGG---SE-EEEEEE----HHHHHHHHHHHHHH
T ss_pred hCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeee---ecccc--ee-EEEecc---cHHHHHHHHhhhhcc
Confidence 1100 000 0122468889988854 222 33332 23 357776 455 46777765443
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhhhhhccCCC
Q 005388 485 QSPDYAEEPDFEAGLQDFKNRLANYEKVYEPVD 517 (699)
Q Consensus 485 ~spD~s~~~d~e~al~d~~~Ri~~y~~~yEpl~ 517 (699)
. .+. +.+++++.|..+.+.+++..+|-.
T Consensus 151 ~----rG~-~~~~~~~~~~~~~~~~~~~I~p~~ 178 (194)
T PF00485_consen 151 E----RGR-SPEEVIAQYERVRPGYERYIEPQK 178 (194)
T ss_dssp H----S-S--HHHHHHHHHTHHHHHHHCTGGGG
T ss_pred c----cCC-cceeEEEEeecCChhhhhheeccc
Confidence 2 345 788999999988888887777754
No 158
>PRK15453 phosphoribulokinase; Provisional
Probab=97.82 E-value=6.1e-05 Score=80.02 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=39.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
++.+|+++|.|||||||+|++|++.|+..++.+.+++.|+|.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 5678999999999999999999999988888888999998865
No 159
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.81 E-value=0.00021 Score=71.03 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
+.+|+++|.|||||+|++++|.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3579999999999999999999874
No 160
>PLN02924 thymidylate kinase
Probab=97.79 E-value=0.0008 Score=69.32 Aligned_cols=37 Identities=38% Similarity=0.522 Sum_probs=32.9
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
..+++|++.|.+||||||+++.|+++|...|+++..+
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~ 50 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELW 50 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceee
Confidence 3568999999999999999999999999988887654
No 161
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.74 E-value=0.00072 Score=67.41 Aligned_cols=145 Identities=15% Similarity=0.244 Sum_probs=84.6
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHH----------HH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN----------EV 418 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~----------~v 418 (699)
..+.+|++.|-|||||-|.+.+|+++++|.. ++.||.=|..... +.++.+..... ++
T Consensus 6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~ftH-----lSaGdLLR~E~~~--------~gse~g~~I~~~i~~G~iVP~ei 72 (195)
T KOG3079|consen 6 DKPPIIFVLGGPGSGKGTQCEKIVEKYGFTH-----LSAGDLLRAEIAS--------AGSERGALIKEIIKNGDLVPVEI 72 (195)
T ss_pred cCCCEEEEEcCCCCCcchHHHHHHHHcCcee-----ecHHHHHHHHHcc--------ccChHHHHHHHHHHcCCcCcHHH
Confidence 3567899999999999999999999977654 5666653322111 11222211111 22
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHc-CCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHH
Q 005388 419 AALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAE-GNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEA 497 (699)
Q Consensus 419 A~~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~-~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~ 497 (699)
...+|++...-..+.+ ..++|+---..+++..|..... .---++|++| .+++.-+|+-.|.+.+. -.+. +
T Consensus 73 ~~~LL~~am~~~~~~~-~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc---~ee~~l~Rll~R~q~~~-R~DD-n--- 143 (195)
T KOG3079|consen 73 TLSLLEEAMRSSGDSN-GFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDC---PEETMLKRLLHRGQSNS-RSDD-N--- 143 (195)
T ss_pred HHHHHHHHHHhcCCCC-eEEecCCCCChHHHHHHHHHhcCCCCEEEEEeC---CHHHHHHHHHhhcccCC-CCCC-c---
Confidence 2233322221122212 2788887777777777766533 2233566766 57888888877766433 3332 2
Q ss_pred HHHHHHHHHHhhhhhccCC
Q 005388 498 GLQDFKNRLANYEKVYEPV 516 (699)
Q Consensus 498 al~d~~~Ri~~y~~~yEpl 516 (699)
.+..++|++.|.+.-.|+
T Consensus 144 -~esikkR~et~~~~t~Pv 161 (195)
T KOG3079|consen 144 -EESIKKRLETYNKSTLPV 161 (195)
T ss_pred -hHHHHHHHHHHHHcchHH
Confidence 234678999988766665
No 162
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.72 E-value=9.2e-05 Score=78.14 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=37.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
+|.++|.+||||||++++|++.|+..++++.+++.|+|.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 5889999999999999999999998888899999999866
No 163
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.71 E-value=0.00053 Score=67.95 Aligned_cols=141 Identities=19% Similarity=0.234 Sum_probs=72.2
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCC-cCCCCHHHHHHHHHH---HH------
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADF-FRADNPEGMEARNEV---AA------ 420 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f-~~~~~~~~~~~~~~v---A~------ 420 (699)
+.+|+|+|.+|||||||+++|.+.+.-.......... |..+.+.....+| |- ..+.+..+.+- +.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TT---R~~r~~E~~g~~y~fv--s~~~f~~~~~~~~fie~~~~~g 76 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTT---RPPRPGEVDGVDYHFV--SKEEFERMIKAGEFIEYGEYDG 76 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEES---S-GGTTS-TTTSEEE----HHHHHHHHHTTHEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecc---cCCcccccCCcceEEE--eechhhhhhccccEEEEeeecc
Confidence 4578999999999999999999886532111111111 3323221111112 11 22222222110 00
Q ss_pred ----HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChH
Q 005388 421 ----LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFE 496 (699)
Q Consensus 421 ----~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e 496 (699)
...+.+...+ +.|.++|+|.. .+-+..+.+.+...++|-+.+++.+.+++|++.+.. +.
T Consensus 77 ~~YGt~~~~i~~~~-~~gk~~il~~~------~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~---------~~- 139 (183)
T PF00625_consen 77 NYYGTSKSAIDKVL-EEGKHCILDVD------PEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGD---------ES- 139 (183)
T ss_dssp EEEEEEHHHHHHHH-HTTTEEEEEET------HHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTH---------CH-
T ss_pred hhhhhccchhhHhh-hcCCcEEEEcc------HHHHHHHHhcccCceEEEEEccchHHHHHHHhcccc---------cc-
Confidence 0001111112 26889999865 234455534466666676677889999999876532 11
Q ss_pred HHHHHHHHHHHhhhhhccC
Q 005388 497 AGLQDFKNRLANYEKVYEP 515 (699)
Q Consensus 497 ~al~d~~~Ri~~y~~~yEp 515 (699)
.+...+|+...++.++-
T Consensus 140 --~~~i~~r~~~~~~~~~~ 156 (183)
T PF00625_consen 140 --EEEIEERLERAEKEFEH 156 (183)
T ss_dssp --HHHHHHHHHHHHHHHGG
T ss_pred --HHHHHHHHHHHHHHHhH
Confidence 23345566665555543
No 164
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.00037 Score=77.42 Aligned_cols=44 Identities=36% Similarity=0.534 Sum_probs=40.3
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
..|.+|+|+||-||||||.|-+||+||...+.++-++..|.||-
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 46899999999999999999999999999999988888888865
No 165
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.68 E-value=0.00057 Score=67.93 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
+|++.|.+||||||+++.|++++++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~ 25 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGY 25 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999998654
No 166
>PRK13974 thymidylate kinase; Provisional
Probab=97.68 E-value=0.0012 Score=67.30 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=26.2
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcC
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~g 379 (699)
+.+|+|.|.+||||||.++.|+++|...|
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g 31 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSG 31 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999997544
No 167
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=97.67 E-value=5.6e-05 Score=82.17 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=72.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
.+-+|+++|+||+||||++......-++..++.+++ +..++ |+.....+
T Consensus 268 ~~eiV~~vgfp~sGks~f~a~~~~~~~y~~vn~d~l--g~~~~-----------------------------C~~~~~e~ 316 (422)
T KOG2134|consen 268 HGEIVVAVGFPGSGKSTFAAKRVVPNGYKIVNADTL--GTPQN-----------------------------CLLANAEA 316 (422)
T ss_pred CCcEEEEEecCCCCcchhhhhhcccCceeEeecccC--CCchh-----------------------------hHHHHHHH
Confidence 447999999999999999877665433444444444 11211 22111222
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
|. .|..||+|.||+..+.|..+.+. .+.++.+.++|..|+ .+..+.|+..|..
T Consensus 317 l~-~~~sVvidnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s-~eq~~hn~~fR~~ 370 (422)
T KOG2134|consen 317 LK-HGKSVVIDNTNPDAESRKYYLDCATEREIPIRCFEMNSS-VEQAQHNNRFREL 370 (422)
T ss_pred hh-cccEEeeCCCCcchHHHHHHhhhHHHhCccceeeeeccH-HHhhhccccchhh
Confidence 33 58899999999999999999998 777888999999888 6666777766643
No 168
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.66 E-value=0.00057 Score=66.76 Aligned_cols=147 Identities=12% Similarity=0.108 Sum_probs=97.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCC-CHHHHHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRAD-NPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~-~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
|.+.+|.|..||||||+-..+-..+. -...++|.|..-... .+.+ +...++ .++. ..+...+
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~---~~~~~VN~D~iA~~i---------~p~~p~~~~i~----A~r~-ai~~i~~ 64 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLL---PGIVFVNADEIAAQI---------SPDNPTSAAIQ----AARV-AIDRIAR 64 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhc---CCeEEECHHHHhhhc---------CCCCchHHHHH----HHHH-HHHHHHH
Confidence 67889999999999998765554432 244567766553211 1111 111111 1221 2223344
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHhh
Q 005388 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 509 (699)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri~~y 509 (699)
+.+.|...+...|...+..++.++..+..||-++...+..+..++-.+|++.|..+.. .+. ..+.....|.+++++.
T Consensus 65 ~I~~~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GG--H~I-pED~Ir~RY~rsle~l 141 (187)
T COG4185 65 LIDLGRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGG--HDI-PEDKIRRRYRRSLELL 141 (187)
T ss_pred HHHcCCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCC--CCC-cHHHHHHHHHHHHHHH
Confidence 5567999999999999999999999988899888877788889999999999876433 233 3345555677777776
Q ss_pred hhhccCCC
Q 005388 510 EKVYEPVD 517 (699)
Q Consensus 510 ~~~yEpl~ 517 (699)
...++=.|
T Consensus 142 ~~~l~l~d 149 (187)
T COG4185 142 AQALTLAD 149 (187)
T ss_pred HHHHhhcc
Confidence 66655444
No 169
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.62 E-value=0.00089 Score=68.90 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=35.2
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceE-eehhhH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH-FNVGKY 390 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv-~~~gdy 390 (699)
..++.+|.+.|.+||||||+++.|+..+...+....+ ++.|+|
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 3578999999999999999999999999877666555 555554
No 170
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.62 E-value=0.00042 Score=69.93 Aligned_cols=34 Identities=24% Similarity=0.104 Sum_probs=27.5
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
++|.++|.+||||||+|+.|++.++...+++|.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~ 35 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIY 35 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHH
Confidence 3699999999999999999998876655555443
No 171
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.61 E-value=0.00079 Score=67.36 Aligned_cols=116 Identities=19% Similarity=0.174 Sum_probs=63.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHH--------------
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------------- 415 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~-------------- 415 (699)
++++|+++|.+|+|||||.++|-+... ..+. .... -|..+.|.-...+|+=-..++.-+.+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~S-VS~T---TR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gn 77 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFS-VSAT---TRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGN 77 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC-eEEE-EEec---cCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCC
Confidence 578999999999999999999998762 1111 1111 13333222111112111111111111
Q ss_pred -----HHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 416 -----NEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 416 -----~~vA~~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
..-+..+++ .|..||+|-.- +-+..+.+.--.+++|-+.|++.+.+++|++.|..
T Consensus 78 yYGT~~~~ve~~~~--------~G~~vildId~------qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgt 137 (191)
T COG0194 78 YYGTSREPVEQALA--------EGKDVILDIDV------QGALQVKKKMPNAVSIFILPPSLEELERRLKGRGT 137 (191)
T ss_pred cccCcHHHHHHHHh--------cCCeEEEEEeh------HHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCC
Confidence 112223333 69999997644 22333321111566666778999999999998865
No 172
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.61 E-value=9.1e-05 Score=84.85 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=29.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
++++|.+.|.+||||||+|+.|+++|++..++++-+
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~ 318 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAM 318 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCce
Confidence 457899999999999999999999998655554433
No 173
>PLN02348 phosphoribulokinase
Probab=97.60 E-value=0.0004 Score=76.93 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=36.3
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcC---------------CCceEeehhhH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG---------------HDTKHFNVGKY 390 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~g---------------i~tdv~~~gdy 390 (699)
..+|++|-+.|-|||||||+|+.|+..|+..+ ..+.+++.|+|
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDY 103 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDY 103 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccc
Confidence 35789999999999999999999999997542 35668888888
No 174
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.58 E-value=0.00049 Score=77.35 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=39.2
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyR 391 (699)
.+|.+|+|+|++|+||||++.+|+.+|...|.++-+++.|.||
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 3578999999999999999999999998888888899998887
No 175
>PRK07933 thymidylate kinase; Validated
Probab=97.57 E-value=0.0033 Score=64.30 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=30.0
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
++|++-|.-||||||+++.|+++|...|+++.+.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~ 34 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL 34 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4799999999999999999999999888766544
No 176
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.55 E-value=0.0002 Score=71.94 Aligned_cols=31 Identities=29% Similarity=0.188 Sum_probs=24.5
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCce
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~td 383 (699)
.+|.++|.+||||||+++.|++ ++...+++|
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D 33 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDAD 33 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEec
Confidence 5799999999999999999997 554333333
No 177
>PTZ00301 uridine kinase; Provisional
Probab=97.54 E-value=0.00064 Score=69.57 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=77.3
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhc-CCC-ceEeehhhHHHHhhCCCC-CCCCcCCCCHHH--HHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL-GHD-TKHFNVGKYRRLKHGVNQ-SADFFRADNPEG--MEARNEVAALAMED 425 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~-gi~-tdv~~~gdyRr~~~g~~~-~~~f~~~~~~~~--~~~~~~vA~~~l~d 425 (699)
.++|-+.|-|||||||+|+.|++.|... +.. +.++..|+|-+-...... ..+..+-+...+ ...+.+....+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 4789999999999999999999888532 333 346777777331111110 011222222222 22222222221110
Q ss_pred ------HHHHHh----------cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCC
Q 005388 426 ------MISWMH----------EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDY 489 (699)
Q Consensus 426 ------l~~~L~----------~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~ 489 (699)
.++|-. ....++|+++.+.... ..+.++. +++ +||++ +....+.||+.+-...
T Consensus 83 ~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~--~~l~~l~--D~~-ifvd~--~~d~~~~Rr~~Rd~~~---- 151 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN--AELRNEM--DCL-IFVDT--PLDICLIRRAKRDMRE---- 151 (210)
T ss_pred CcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC--HHHHHhC--CEE-EEEeC--ChhHHHHHHHhhhHHh----
Confidence 011110 1246888888887311 2333332 332 67775 4444455555433221
Q ss_pred CCCCChHHHHHHHHHHHHhhhhhc-cCCC
Q 005388 490 AEEPDFEAGLQDFKNRLANYEKVY-EPVD 517 (699)
Q Consensus 490 s~~~d~e~al~d~~~Ri~~y~~~y-Epl~ 517 (699)
.+. +.+.+++.|..+...-...| +|..
T Consensus 152 rG~-~~e~v~~~~~~~v~~~~~~~I~p~k 179 (210)
T PTZ00301 152 RGR-TFESVIEQYEATVRPMYYAYVEPSK 179 (210)
T ss_pred cCC-CHHHHHHHHHHhhcccHHHHcCccc
Confidence 244 67888777777644333333 4443
No 178
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.50 E-value=0.00082 Score=66.90 Aligned_cols=31 Identities=26% Similarity=0.188 Sum_probs=24.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCce
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~td 383 (699)
+|.++|-+||||||+|+.|++..++..+++|
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D 31 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDAD 31 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCC
Confidence 4889999999999999999987544433433
No 179
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.49 E-value=0.0008 Score=68.08 Aligned_cols=42 Identities=36% Similarity=0.418 Sum_probs=35.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
|.+|+|+|.+|+||||.+.+|+.++...+.+.-+++.|.||-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 679999999999999999999999987788888888877753
No 180
>PRK10867 signal recognition particle protein; Provisional
Probab=97.49 E-value=0.00059 Score=76.92 Aligned_cols=44 Identities=34% Similarity=0.458 Sum_probs=39.6
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhc-CCCceEeehhhHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKYRR 392 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~-gi~tdv~~~gdyRr 392 (699)
.+|.+|+|+|++|+||||++..||.+|... |.++-+++.|.||-
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 358999999999999999999999999877 88888999888866
No 181
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.0061 Score=62.40 Aligned_cols=126 Identities=21% Similarity=0.166 Sum_probs=70.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee-------hhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN-------VGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALA 422 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~-------~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~ 422 (699)
++++|++-|.=||||||.++.|.++|...|+++...- +...|....... ..........+...++.-
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~------~~~~~~~e~lLfaadR~~ 75 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGE------EKLSPKAEALLFAADRAQ 75 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCc------cCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999887654431 111222211110 112222222222222211
Q ss_pred -HHHHHHHHhcCCeEEEEeCCCCCH------------HHHHHHHHHHc---CCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 423 -MEDMISWMHEGGQVGIFDATNSSR------------KRRNMLMKMAE---GNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 423 -l~dl~~~L~~~G~vVIlDAtn~~~------------e~R~~l~el~~---~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
+...+.-....|.+||+|=-..+. +....+.+... ..--++|+.+ ++++..+|+.+|..
T Consensus 76 h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv---~~e~al~R~~~r~~ 150 (208)
T COG0125 76 HLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDV---PPEVALERIRKRGE 150 (208)
T ss_pred HHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeC---CHHHHHHHHHhcCC
Confidence 111121222468999998544332 22222223322 1223577877 79999999988865
No 182
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.00076 Score=69.16 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=33.8
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
.++++|-+.|-+||||||+|+.|...|+-. ..-+++.|+|=+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk 47 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYK 47 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeecccccc
Confidence 456899999999999999999999998843 555677777733
No 183
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.46 E-value=0.00054 Score=68.91 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=27.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
+|.++|.|||||||+|+.|++.+. .+.+++.|+|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf 34 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQDDF 34 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC----CCeEEccccc
Confidence 588999999999999999999863 3556666666
No 184
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.46 E-value=0.0019 Score=66.20 Aligned_cols=28 Identities=29% Similarity=0.147 Sum_probs=24.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCC
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi 380 (699)
+|++-|.-||||||+++.|+++|.+.++
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~ 28 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 5889999999999999999999876433
No 185
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.00065 Score=70.69 Aligned_cols=141 Identities=17% Similarity=0.206 Sum_probs=81.9
Q ss_pred hhHHHHHhhhcCCCCCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCC--------C----
Q 005388 334 VAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--------A---- 401 (699)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~--------~---- 401 (699)
+|..-+..... ++...|++|++-|-||.||||+|..||++|+- +. ++..|-.|+.+.+.-.. .
T Consensus 73 ~a~rY~lwR~i-r~~~~p~IILIGGasGVGkStIA~ElA~rLgI---~~-visTD~IREvlR~ii~~~l~PtLh~Ssy~A 147 (299)
T COG2074 73 VAKRYLLWRRI-RKMKRPLIILIGGASGVGKSTIAGELARRLGI---RS-VISTDSIREVLRKIISPELLPTLHTSSYDA 147 (299)
T ss_pred HHHHHHHHHHH-hccCCCeEEEecCCCCCChhHHHHHHHHHcCC---ce-eecchHHHHHHHHhCCHHhcchhhHhHHHH
Confidence 45555555544 24457999999999999999999999999763 22 34444446644321110 0
Q ss_pred ----CCcCCCC--HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHH-HHHHHHHHcCCceEEEEEEEeCCHHH
Q 005388 402 ----DFFRADN--PEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKR-RNMLMKMAEGNCKIIFLETICNDRDI 474 (699)
Q Consensus 402 ----~f~~~~~--~~~~~~~~~vA~~~l~dl~~~L~~~G~vVIlDAtn~~~e~-R~~l~el~~~~~~vifIE~~c~d~e~ 474 (699)
......+ -.+|..-...+.-.++.++.-..++|..+|+.++..-+.. +.... +..++..-+...|+++
T Consensus 148 wkalr~~~~~~piiaGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~~~-----~~n~~~~~l~i~dee~ 222 (299)
T COG2074 148 WKALRDPTDENPIIAGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEEAL-----GNNVFMFMLYIADEEL 222 (299)
T ss_pred HHHhcCCCCCcchhhhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHhhh-----ccceEEEEEEeCCHHH
Confidence 0000111 1223333333333333333333348999999999988764 22222 2223344456789999
Q ss_pred HHHHHHHhhc
Q 005388 475 IERNIRLKIQ 484 (699)
Q Consensus 475 i~rrI~~r~~ 484 (699)
.++|.-.|.+
T Consensus 223 Hr~RF~~R~~ 232 (299)
T COG2074 223 HRERFYDRIR 232 (299)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 186
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.44 E-value=0.0016 Score=65.16 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=30.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyR 391 (699)
+|.++|.+||||||+|+.|...+ .+..+.+++.|+|-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 57899999999999999999987 34466777777764
No 187
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.44 E-value=0.00055 Score=77.28 Aligned_cols=44 Identities=41% Similarity=0.555 Sum_probs=39.4
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
.+|.+|+|+|++|+||||++..|+.+|...+.++-+++.|.||-
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 36889999999999999999999999998888888888887755
No 188
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.41 E-value=0.00096 Score=70.86 Aligned_cols=44 Identities=30% Similarity=0.351 Sum_probs=37.7
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
.++.+|+|+|.||+||||++..|+.++...+.++-+++.|.||.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 35678999999999999999999999988888888888776644
No 189
>PLN02842 nucleotide kinase
Probab=97.40 E-value=0.00088 Score=76.53 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.6
Q ss_pred EEEccCCCChhHHHHHHHHHHhhcC
Q 005388 355 VLVGLPARGKTFTAAKLTRYLRWLG 379 (699)
Q Consensus 355 vmvGLPGSGKSTlAr~La~~L~~~g 379 (699)
++.|.|||||||+|+.|+++++...
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~h 25 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVH 25 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCE
Confidence 4789999999999999999976543
No 190
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.37 E-value=0.014 Score=57.75 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.9
Q ss_pred EEccCCCChhHHHHHHHHHHhhcCCC
Q 005388 356 LVGLPARGKTFTAAKLTRYLRWLGHD 381 (699)
Q Consensus 356 mvGLPGSGKSTlAr~La~~L~~~gi~ 381 (699)
+=|+.||||||+++.|+++|...+++
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~ 26 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYK 26 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 35999999999999999999999887
No 191
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.37 E-value=0.0026 Score=63.05 Aligned_cols=34 Identities=26% Similarity=0.199 Sum_probs=25.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
+|.++|.|||||||+|+.|++ ++.. +++.|++-+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~-----~i~~D~~~~ 34 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIP-----VIDADKIAH 34 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCC-----EEecCHHHH
Confidence 488999999999999999998 4433 455555544
No 192
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.34 E-value=0.0016 Score=66.19 Aligned_cols=36 Identities=28% Similarity=0.265 Sum_probs=27.7
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
.++|-++|.|||||||+|+.+++ ++... ++.|++-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~v-----idaD~v~r 37 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPV-----IDADDVAR 37 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeE-----EEccHHHH
Confidence 47899999999999999999998 55443 55555444
No 193
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.33 E-value=0.00086 Score=68.97 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=30.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhh--cCCCceEeehhhH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 390 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~--~gi~tdv~~~gdy 390 (699)
+|-+.|.+||||||+|+.|+..|.. .+.++.+++.|+|
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 4678999999999999999999874 3456667777766
No 194
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.001 Score=72.82 Aligned_cols=104 Identities=21% Similarity=0.313 Sum_probs=67.1
Q ss_pred CCCCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhh------CCCCCCCCcCCCCHHHHHHHHHHH
Q 005388 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKH------GVNQSADFFRADNPEGMEARNEVA 419 (699)
Q Consensus 346 ~~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~------g~~~~~~f~~~~~~~~~~~~~~vA 419 (699)
+...+|-||.|+||-|+||||.+-+||.|+...|.++-++..|.||--.+ .....-.||..+.+.- -.++|
T Consensus 96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~d---pv~ia 172 (483)
T KOG0780|consen 96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEAD---PVKIA 172 (483)
T ss_pred cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccc---hHHHH
Confidence 34568999999999999999999999999999999998888888865211 1111233444332211 11333
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Q 005388 420 ALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM 455 (699)
Q Consensus 420 ~~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el 455 (699)
.+. +..|=+++-.++|+|...-.+..-..+.++
T Consensus 173 ~eg---v~~fKke~fdvIIvDTSGRh~qe~sLfeEM 205 (483)
T KOG0780|consen 173 SEG---VDRFKKENFDVIIVDTSGRHKQEASLFEEM 205 (483)
T ss_pred HHH---HHHHHhcCCcEEEEeCCCchhhhHHHHHHH
Confidence 333 334444556677777666555555555555
No 195
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.27 E-value=0.0017 Score=73.27 Aligned_cols=44 Identities=34% Similarity=0.472 Sum_probs=38.7
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHh-hcCCCceEeehhhHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRR 392 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~-~~gi~tdv~~~gdyRr 392 (699)
.+|.+|+|+|+||+||||++..|+.+|. ..+.++-+++.|.||-
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 3589999999999999999999999986 4688888898888765
No 196
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.26 E-value=0.0033 Score=61.39 Aligned_cols=40 Identities=45% Similarity=0.580 Sum_probs=34.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
+++++|.||+||||+++.|+..+...+.++-+++.|.+|.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 6899999999999999999999987788888888776653
No 197
>PRK13976 thymidylate kinase; Provisional
Probab=97.24 E-value=0.011 Score=60.57 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=25.0
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
++|++-|.-||||||+++.|+++|...
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~ 27 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDI 27 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 479999999999999999999999875
No 198
>PRK05439 pantothenate kinase; Provisional
Probab=97.24 E-value=0.0014 Score=70.87 Aligned_cols=43 Identities=21% Similarity=0.182 Sum_probs=37.1
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhh--cCCCceEeehhhH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 390 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~--~gi~tdv~~~gdy 390 (699)
...|++|-++|-|||||||+|+.|+..|.. .+.++.++..|+|
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 457899999999999999999999998874 3567888888887
No 199
>PLN02165 adenylate isopentenyltransferase
Probab=97.24 E-value=0.0011 Score=72.31 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=28.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCce
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~td 383 (699)
.+.+|+++|.+|||||+||..|++.+++..+++|
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 4558999999999999999999999876444443
No 200
>PRK14974 cell division protein FtsY; Provisional
Probab=97.23 E-value=0.0016 Score=71.23 Aligned_cols=44 Identities=34% Similarity=0.437 Sum_probs=37.8
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
.+|.+|+|+|.||+||||++.+|+.+|...+.++-+++.|.||.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 35789999999999999999999999988887777777776654
No 201
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.21 E-value=0.0048 Score=62.93 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=24.2
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
..+|++.|+=|+||||||+.|+++|+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999977
No 202
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.20 E-value=0.0059 Score=61.79 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=30.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
.+.+|.++|.+||||||+++.|+..+.. ..+.+++.|+|
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 4679999999999999999999988764 23445555555
No 203
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.17 E-value=0.00045 Score=57.98 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=25.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
+|+++|.|||||||+|+.|++.| .+.+..++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i 31 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVL 31 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEE
Confidence 47889999999999999999998 34455444
No 204
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.16 E-value=0.0054 Score=65.33 Aligned_cols=120 Identities=14% Similarity=0.220 Sum_probs=62.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~ 432 (699)
+||++||+||||||..+.|+. ++|..++- . -. ..+.+++..+.+. --..
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED-~Gy~cvDN-------l-----------------P~---~Ll~~l~~~~~~~---~~~~ 51 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALED-LGYYCVDN-------L-----------------PP---SLLPQLIELLAQS---NSKI 51 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHh-cCeeEEcC-------C-----------------cH---HHHHHHHHHHHhc---CCCC
Confidence 799999999999999888884 45543221 1 01 1112222221110 0001
Q ss_pred CCeEEEEeCCCCCH--HHHHHHHHH--HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHH
Q 005388 433 GGQVGIFDATNSSR--KRRNMLMKM--AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (699)
Q Consensus 433 ~G~vVIlDAtn~~~--e~R~~l~el--~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri~ 507 (699)
....+++|.-+..- +.-+.+.++ ....++++|+|+ + .+++-+|-..-.+..|--.+. ...++++.=.+.++
T Consensus 52 ~~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA--~-d~~LirRy~eTRR~HPL~~~~-~~le~I~~Er~~L~ 126 (284)
T PF03668_consen 52 EKVAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDA--S-DEVLIRRYSETRRRHPLSSDG-SLLEAIEKERELLE 126 (284)
T ss_pred ceEEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEEC--C-hHHHHHHHHhccCCCCCCCCC-CcHHHHHHHHHHHH
Confidence 24567778877642 223444445 345667777776 4 555555554444446655544 33344444333333
No 205
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.13 E-value=0.0028 Score=68.89 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=36.8
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyR 391 (699)
.++.+|.++|.+|+||||++..|+.++...+.++-+++.|.||
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 3578999999999999999999999998777777777776654
No 206
>PRK07429 phosphoribulokinase; Provisional
Probab=97.13 E-value=0.0028 Score=69.10 Aligned_cols=41 Identities=20% Similarity=0.110 Sum_probs=32.3
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
..++++|-++|-+||||||+++.|++.|+... ..+++.|+|
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~--~~vi~~Dd~ 45 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEEL--VTVICTDDY 45 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCc--eEEEEeccc
Confidence 35789999999999999999999999887432 234555665
No 207
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.11 E-value=0.0041 Score=60.76 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=75.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh--hcCCCceEeehhhHHHHhhC--CCCCCCCcCC-----CCHHH----HHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYRRLKHG--VNQSADFFRA-----DNPEG----MEARN 416 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~--~~gi~tdv~~~gdyRr~~~g--~~~~~~f~~~-----~~~~~----~~~~~ 416 (699)
+..+|++-|-|.+|||.||.+++.... |+.+-.|.| =...-- .....+|.-+ +..+. +.-+.
T Consensus 22 ~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f-----~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~ 96 (205)
T COG3896 22 EGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLF-----WEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPIL 96 (205)
T ss_pred CceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHH-----HHhCCHHhhccccccccccccccCCceeeEeechhHH
Confidence 456899999999999999999997764 766555544 111000 0001111111 01100 11112
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCC
Q 005388 417 EVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYA 490 (699)
Q Consensus 417 ~vA~~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s 490 (699)
+.+..-..-.+.-+.++|..+|.|+.-.+++..-..... -.+++|.||-+.|++++..+|+.+ |....|.|.
T Consensus 97 e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~-l~g~~v~~VGV~~p~E~~~~Re~r-r~dR~pG~~ 168 (205)
T COG3896 97 ELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRV-LEGCRVWMVGVHVPDEEGARRELR-RGDRHPGWN 168 (205)
T ss_pred HHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHH-HhCCceEEEEeeccHHHHHHHHhh-cCCcCcchh
Confidence 222211111222244579999999999886543333222 247899999999998887777776 333245444
No 208
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.0057 Score=60.32 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=30.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
+++++++|.||+||||+.+.+.+.| ++..++|-|++
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l----~~~~ivNyG~~ 39 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL----VKHKIVNYGDL 39 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH----hhceeeeHhHH
Confidence 6899999999999999999999887 55666777776
No 209
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.09 E-value=0.0012 Score=67.35 Aligned_cols=36 Identities=19% Similarity=0.090 Sum_probs=29.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
.|++|.++|.+||||||+++.|++.++...+++|.+
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i 40 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTI 40 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHH
Confidence 478999999999999999999998876555555544
No 210
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=97.03 E-value=0.00088 Score=69.08 Aligned_cols=58 Identities=26% Similarity=0.315 Sum_probs=47.6
Q ss_pred cceEEecccccccccCCcccCCCCCCHHHHHHHHHHHHHHHHHhccC--------CCCEEEEcChHHHHHHHhhh
Q 005388 560 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSE--------RAASIWTSTLQRTILTASPI 626 (699)
Q Consensus 560 ~~I~LVRHGeS~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~--------~~~~V~sSpL~RA~QTA~~i 626 (699)
+..+++|||+..- ..||+.|.+|+..+|++++++.... ..-.+++|+..||+|||+.+
T Consensus 4 ~v~~~~RHg~r~p---------~~LT~~G~~q~~~~G~~lr~~y~~~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~ 69 (242)
T cd07061 4 QVQVLSRHGDRYP---------GELTPFGRQQAFELGRYFRQRYGELLLLHSYNRSDLYIRSSDSQRTLQSAQAF 69 (242)
T ss_pred EEEEEEecCCCCc---------hhhhHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEEECCCcHHHHHHHHH
Confidence 3467899999753 3599999999999999999875332 23378999999999999998
No 211
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.00 E-value=0.0039 Score=64.34 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=29.1
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceE
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv 384 (699)
+++|.+.|.|||||||+|+.|+++|+...+++..
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~ 37 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGA 37 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCch
Confidence 5789999999999999999999998866555544
No 212
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=96.99 E-value=0.0061 Score=62.03 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=25.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCce
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~td 383 (699)
.+++|.++|-+||||||+++.|.. +++..+++|
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D 36 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEAD 36 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEecc
Confidence 568999999999999999999996 444333333
No 213
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=96.94 E-value=0.024 Score=57.51 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=26.0
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyR 391 (699)
++|.++|-+||||||+++.|+. ++. .+++.|++-
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~-----~vid~D~i~ 35 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGF-----LIVDADQVA 35 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCC-----eEEeCcHHH
Confidence 3799999999999999999996 333 346665543
No 214
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=96.93 E-value=0.0084 Score=59.96 Aligned_cols=133 Identities=13% Similarity=0.138 Sum_probs=69.6
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCC----------CCCcCCC--------------
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS----------ADFFRAD-------------- 407 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~----------~~f~~~~-------------- 407 (699)
++|-++|-.||||||+++.|++ ++.. +++.|.+-+.....+.. ..++.++
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~-----vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~ 74 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFP-----VIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFS 74 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-E-----EEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTT
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCC-----EECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhc
Confidence 5799999999999999999997 4543 35555443322221110 1122111
Q ss_pred CHHHHHHHHHHHHH-HHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 408 NPEGMEARNEVAAL-AMEDMISWMHEG--GQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 408 ~~~~~~~~~~vA~~-~l~dl~~~L~~~--G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
+++..+.++.+..- ..+.+..++... ...+|+|+.-+....- . ...+ .+++|.| +.++..+|+..|..
T Consensus 75 d~~~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~~---~--~~~D-~vi~V~a---~~e~ri~Rl~~R~~ 145 (180)
T PF01121_consen 75 DPEKLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESGL---E--KLCD-EVIVVYA---PEEIRIKRLMERDG 145 (180)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTTG---G--GGSS-EEEEEE-----HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhhH---h--hhhc-eEEEEEC---CHHHHHHHHHhhCC
Confidence 22333344443332 334445555543 2688889887654311 1 1112 3455554 57888888877742
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhhhh
Q 005388 485 QSPDYAEEPDFEAGLQDFKNRLANYEK 511 (699)
Q Consensus 485 ~spD~s~~~d~e~al~d~~~Ri~~y~~ 511 (699)
+ +.++ +..|+..|..
T Consensus 146 -------~-~~~~----~~~ri~~Q~~ 160 (180)
T PF01121_consen 146 -------L-SEEE----AEARIASQMP 160 (180)
T ss_dssp -------S-THHH----HHHHHHTS--
T ss_pred -------C-cHHH----HHHHHHhCCC
Confidence 3 4444 4667776643
No 215
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.93 E-value=0.0045 Score=56.64 Aligned_cols=32 Identities=34% Similarity=0.446 Sum_probs=25.7
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
|+++|.||+||||+++.|+++++ .+...++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG---FPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT---SEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc---ccccccccc
Confidence 68999999999999999999964 444455543
No 216
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.93 E-value=0.0024 Score=60.75 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+|+++|.+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478899999999999999998754
No 217
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.0068 Score=58.78 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=27.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
-|+++|=||+||||+|.+|+..++... ++.+++-|
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~-----i~isd~vk 43 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEY-----IEISDLVK 43 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCce-----EehhhHHh
Confidence 489999999999999999998865433 55566655
No 218
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=96.88 E-value=0.0023 Score=64.21 Aligned_cols=120 Identities=13% Similarity=0.172 Sum_probs=67.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCce-EeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH---H
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK-HFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI---S 428 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~td-v~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~---~ 428 (699)
++.+.|+|++|||++.+.|.-.-..+.++.. .+.-||++-. ..+..+.. +.+ ...+.......|...+. +
T Consensus 3 LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmd-aTpSaD~a-~ke----qRgr~~~~iEk~ISaiqedtd 76 (291)
T KOG4622|consen 3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMD-ATPSADKA-AKE----QRGRFECHIEKCISAIQEDTD 76 (291)
T ss_pred eeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhh-cCcchhhh-HHH----HhchHHHHHHHHHHHHhcccC
Confidence 6889999999999999998766555543322 2334666421 11111111 111 12222333333333222 1
Q ss_pred H------------HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHH
Q 005388 429 W------------MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERN 478 (699)
Q Consensus 429 ~------------L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rr 478 (699)
| .+.+..+.++|..|..+.+|..+.++ ..+|+.+=.|-....-.+.+++|
T Consensus 77 wppqvrrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaN 139 (291)
T KOG4622|consen 77 WPPQVRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQAN 139 (291)
T ss_pred CCchheeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhc
Confidence 2 12224688899999999999999999 77777664444423323444443
No 219
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.86 E-value=0.0014 Score=72.36 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=31.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
.|.+|+++|++|||||||+.+|.+.|... +++-++
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~i 38 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYY 38 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEE
Confidence 58999999999999999999999999876 666665
No 220
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.85 E-value=0.0054 Score=67.00 Aligned_cols=41 Identities=27% Similarity=0.292 Sum_probs=36.2
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
..++.+|.++|.||+||||+...|...+...+.++-++..|
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~D 93 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVD 93 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeC
Confidence 34789999999999999999999999999888888877664
No 221
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=96.81 E-value=0.0087 Score=62.73 Aligned_cols=33 Identities=24% Similarity=0.079 Sum_probs=26.1
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceE
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv 384 (699)
++|-++|-.||||||+++.|.+.++...+++|.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~ 34 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADL 34 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHH
Confidence 479999999999999999999875554444443
No 222
>PHA03132 thymidine kinase; Provisional
Probab=96.79 E-value=0.094 Score=61.22 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=23.7
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.++|++-|.-|+||||+++.|+++|
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~l 281 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGIL 281 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999999998
No 223
>PRK09169 hypothetical protein; Validated
Probab=96.78 E-value=0.0037 Score=80.40 Aligned_cols=139 Identities=12% Similarity=-0.051 Sum_probs=81.4
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L 430 (699)
..-|+|+|++|+|||||++.|+..|++..+++|.... ...+.... .+|..+. .++ +.+...+.++.
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIe-----ks~GrkI~-rIFa~eG--~FR---e~Eaa~V~Dll--- 2175 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIA-----KKIGKKIA-RIQALRG--LSP---EQAAARVRDAL--- 2175 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHH-----HHhCCCHH-HHHHhcC--chH---HHHHHHHHHHh---
Confidence 3469999999999999999999999998887766532 22222221 1222222 112 22222222222
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCCh--------HHHHHHH
Q 005388 431 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF--------EAGLQDF 502 (699)
Q Consensus 431 ~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~--------e~al~d~ 502 (699)
. ..+|+..-.......+....+.+.|+ +||+.. +.+.+.+|+.... .+|-..+. ++ ++.++.+
T Consensus 2176 -r--~~vVLSTGGGav~~~enr~~L~~~Gl-vV~L~a---n~~tl~~Rty~g~-NRPLL~~~-~~~FEiQFHT~esl~Lk 2246 (2316)
T PRK09169 2176 -R--WEVVLPAEGFGAAVEQARQALGAKGL-RVMRIN---NGFAAPDTTYAGL-NVNLRTAA-GLDFEIQFHTADSLRTK 2246 (2316)
T ss_pred -c--CCeEEeCCCCcccCHHHHHHHHHCCE-EEEEEC---CHHHHHHHhccCC-CCccccCC-CCccchhccHHHHHHHH
Confidence 1 24455444444333333333455564 566665 7889999997553 35655544 44 5666777
Q ss_pred HHHHHhhhhh
Q 005388 503 KNRLANYEKV 512 (699)
Q Consensus 503 ~~Ri~~y~~~ 512 (699)
.+|-..|++.
T Consensus 2247 ~eRhpLYEqv 2256 (2316)
T PRK09169 2247 NKTHKLYEKL 2256 (2316)
T ss_pred HHhHHHHHHh
Confidence 7888888663
No 224
>PLN02772 guanylate kinase
Probab=96.78 E-value=0.013 Score=65.25 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=23.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
...+|+++|.+|+||+||.++|.+.+.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p 160 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFP 160 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhcc
Confidence 556899999999999999999988653
No 225
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.76 E-value=0.0061 Score=60.40 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.4
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
++|+++|-||.||||+|++|+ .|++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~ 26 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYK 26 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCc
Confidence 369999999999999999999 65543
No 226
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=96.76 E-value=0.0071 Score=61.19 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~ 373 (699)
+|.++|-+||||||+++.|++
T Consensus 1 ~i~itG~~gsGKst~~~~l~~ 21 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE 21 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH
Confidence 578999999999999999975
No 227
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.74 E-value=0.011 Score=68.66 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=32.6
Q ss_pred CCCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHH
Q 005388 347 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (699)
Q Consensus 347 ~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyR 391 (699)
...++++|.+.|.+||||||+|+.|+..+. .+-+++.|+|.
T Consensus 61 ~~~~riIIGIaGpSGSGKTTLAk~LaglLp----~vgvIsmDdy~ 101 (656)
T PLN02318 61 KNDGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVISMDNYN 101 (656)
T ss_pred cCCCeEEEEEECCCCCcHHHHHHHHHhhCC----CcEEEEEccee
Confidence 344689999999999999999999998763 34567677774
No 228
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.74 E-value=0.011 Score=60.89 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=27.4
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCc
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDT 382 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~t 382 (699)
+++|.+.|.+||||||+|+.|+++|+...+++
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~ 33 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDS 33 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeC
Confidence 47899999999999999999999987654444
No 229
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.73 E-value=0.0084 Score=56.37 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=29.6
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
+++++|-||+||||++..++..+...+.++..++.+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 378999999999999999999887666666666554
No 230
>PHA00729 NTP-binding motif containing protein
Probab=96.72 E-value=0.011 Score=61.32 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
..-|+++|-||+||||+|.+|++.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999875
No 231
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.0072 Score=67.37 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=37.4
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyR 391 (699)
.+|.+|.|+|.+|+||||++.+|+..|...+.++-+++.|.||
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 3467899999999999999999999998778788888887776
No 232
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.69 E-value=0.016 Score=60.03 Aligned_cols=117 Identities=15% Similarity=0.288 Sum_probs=70.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHH--------------H
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR--------------N 416 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~--------------~ 416 (699)
++.-+++|.|||||||......+.|+..|.++.++|.|---. ...|-...+-...-.. .
T Consensus 2 ~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd-------~~~Y~~~v~I~elit~edvm~~~~LGPNg~l 74 (290)
T KOG1533|consen 2 PFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPAND-------NLPYECAVDIRELITVEDVMEELGLGPNGAL 74 (290)
T ss_pred CcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCccc-------CCCCCCcccHHHHccHHHHHHHhCCCCchhH
Confidence 345688999999999999999999999999999988751100 0111111111000000 1
Q ss_pred HHHHHHHHHHHHHHhc-----CCeEEEEeCCCC------CHHHHHHHHHHHcCCceEEEEEE----EeCCHHH
Q 005388 417 EVAALAMEDMISWMHE-----GGQVGIFDATNS------SRKRRNMLMKMAEGNCKIIFLET----ICNDRDI 474 (699)
Q Consensus 417 ~vA~~~l~dl~~~L~~-----~G~vVIlDAtn~------~~e~R~~l~el~~~~~~vifIE~----~c~d~e~ 474 (699)
..+.+.++.=++||.. .+.-+|+|+..- .-..+..++.+.+.++.++-|.. .|+++..
T Consensus 75 ~yc~E~l~~~idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~ 147 (290)
T KOG1533|consen 75 KYCMEYLEANIDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSK 147 (290)
T ss_pred HHHHHHHHhhhHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHH
Confidence 2333344444566542 367889998632 22456677777678888776665 6666644
No 233
>PLN02422 dephospho-CoA kinase
Probab=96.61 E-value=0.026 Score=58.76 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=21.6
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcC
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLG 379 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~g 379 (699)
+|.++|-+||||||+++.|++ ++...
T Consensus 3 ~igltG~igsGKstv~~~l~~-~g~~~ 28 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFKS-SGIPV 28 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeE
Confidence 699999999999999999994 34333
No 234
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.54 E-value=0.0051 Score=55.25 Aligned_cols=35 Identities=34% Similarity=0.365 Sum_probs=27.7
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
..++++|.||+||||+++.|+..+...+.....++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 46899999999999999999999876643344443
No 235
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.53 E-value=0.0045 Score=61.24 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=22.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+|+++|-||||||++|..|+..++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 689999999999999999998865
No 236
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.52 E-value=0.017 Score=62.64 Aligned_cols=92 Identities=23% Similarity=0.354 Sum_probs=64.2
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~ 427 (699)
..+|.+|+|+|..|+||||...+||.+|...|.++.+--.|.+|- . +.+++.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRA-----------------a-----------AiEQL~ 187 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRA-----------------A-----------AIEQLE 187 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHH-----------------H-----------HHHHHH
Confidence 457999999999999999999999999999998887776666644 1 334444
Q ss_pred HHHhcCCeEEEEeCCCCCHH--HHHHHHHHHcCCceEEEEEE
Q 005388 428 SWMHEGGQVGIFDATNSSRK--RRNMLMKMAEGNCKIIFLET 467 (699)
Q Consensus 428 ~~L~~~G~vVIlDAtn~~~e--~R~~l~el~~~~~~vifIE~ 467 (699)
.|-.+.|..+|--.....+. -.+.+......++.++++..
T Consensus 188 ~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDT 229 (340)
T COG0552 188 VWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDT 229 (340)
T ss_pred HHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEeC
Confidence 55555677777633333333 23334444566788877765
No 237
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.47 E-value=0.02 Score=56.28 Aligned_cols=108 Identities=24% Similarity=0.304 Sum_probs=62.1
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHH--hhC-----CC-C------CCCCcCCC-CH--HHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL--KHG-----VN-Q------SADFFRAD-NP--EGME 413 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~--~~g-----~~-~------~~~f~~~~-~~--~~~~ 413 (699)
++=|.++|.||+||||++.+|+..|...|+++-=|-..++|+- +.| +. . ..++...- .. -..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~ 84 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVE 84 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHH
Confidence 4568999999999999999999999988766554444444431 111 00 0 01111110 00 0123
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCCCC----CHHHHHHHHHHHcCCceE
Q 005388 414 ARNEVAALAMEDMISWMHEGGQVGIFDATNS----SRKRRNMLMKMAEGNCKI 462 (699)
Q Consensus 414 ~~~~vA~~~l~dl~~~L~~~G~vVIlDAtn~----~~e~R~~l~el~~~~~~v 462 (699)
.+++++..+++.+. +.-.++|+|=..+ .+..++.+.+..+.+-++
T Consensus 85 ~le~i~~~al~rA~----~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpl 133 (179)
T COG1618 85 GLEEIAIPALRRAL----EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPL 133 (179)
T ss_pred HHHHHhHHHHHHHh----hcCCEEEEecccchhhccHHHHHHHHHHhcCCCcE
Confidence 34445544444222 1357999998866 456777777775555443
No 238
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.47 E-value=0.0057 Score=57.80 Aligned_cols=47 Identities=17% Similarity=0.348 Sum_probs=39.6
Q ss_pred HHhhhcCCCCCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 339 VADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 339 l~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
+.+-...+...+|+|+-+.|-||+|||++|+.||+.|-..|.++..+
T Consensus 41 i~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V 87 (127)
T PF06309_consen 41 IKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFV 87 (127)
T ss_pred HHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCce
Confidence 33334455678999999999999999999999999998888888766
No 239
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.42 E-value=0.012 Score=62.52 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=28.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
+|.++|-+||||||+++.|+..|+..+ ..++..|+|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc--eEEEECccc
Confidence 477899999999999999998876443 345656665
No 240
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.42 E-value=0.061 Score=63.57 Aligned_cols=151 Identities=16% Similarity=0.087 Sum_probs=70.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcC-CCceEeeh-hhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~g-i~tdv~~~-gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~ 427 (699)
-+-.++|+|.||+||||+|+.|++.|.... .....-+. ...|+...|...+....+......++...++...+. +
T Consensus 36 l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~---y 112 (702)
T PRK14960 36 LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVP---Y 112 (702)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHh---h
Confidence 356899999999999999999999987532 11110000 011222222211111111111111222222221110 1
Q ss_pred HHHhcCCeEEEEeCCCC-CHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHH
Q 005388 428 SWMHEGGQVGIFDATNS-SRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 505 (699)
Q Consensus 428 ~~L~~~G~vVIlDAtn~-~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~R 505 (699)
.-......++|+|-... +....+.+.+. .+..-.+.||-+ |++...+-.-|..|.. .-++... +.++. ..+.++
T Consensus 113 ~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILa-Ttd~~kIp~TIlSRCq-~feFkpL-s~eEI-~k~L~~ 188 (702)
T PRK14960 113 APTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFA-TTDPQKLPITVISRCL-QFTLRPL-AVDEI-TKHLGA 188 (702)
T ss_pred hhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEE-ECChHhhhHHHHHhhh-eeeccCC-CHHHH-HHHHHH
Confidence 11122357999997765 44545555555 332223334433 5666555555544433 3445544 45544 344444
Q ss_pred HH
Q 005388 506 LA 507 (699)
Q Consensus 506 i~ 507 (699)
+-
T Consensus 189 Il 190 (702)
T PRK14960 189 IL 190 (702)
T ss_pred HH
Confidence 43
No 241
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=96.41 E-value=0.044 Score=55.65 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=63.0
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCC--------------------------CCCcC
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--------------------------ADFFR 405 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~--------------------------~~f~~ 405 (699)
++|=++|--||||||+++.+. .++.-.+++|++ -|....++.+ .-+|.
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~v-----aR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~ 75 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVV-----AREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFS 75 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHH-----HHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhC
Confidence 467889999999999999998 444444444443 3322111110 11122
Q ss_pred C-CCHHHHHH--HHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH--HcCCceEEEEEEEeCCHHHHHHHHH
Q 005388 406 A-DNPEGMEA--RNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM--AEGNCKIIFLETICNDRDIIERNIR 480 (699)
Q Consensus 406 ~-~~~~~~~~--~~~vA~~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el--~~~~~~vifIE~~c~d~e~i~rrI~ 480 (699)
+ ........ .-.+..++++++..++..+-.++|+|..- +++. .+.=.++ +-++|+ +++-.+|+-
T Consensus 76 ~~~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPL--------LFE~~~~~~~~~t--vvV~cd-~~~Ql~Rl~ 144 (225)
T KOG3220|consen 76 DPKKRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPL--------LFEAKLLKICHKT--VVVTCD-EELQLERLV 144 (225)
T ss_pred CHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechH--------HHHHhHHhheeeE--EEEEEC-cHHHHHHHH
Confidence 1 11111111 12366677788888888877788888743 4443 2222233 334566 666666775
Q ss_pred Hh
Q 005388 481 LK 482 (699)
Q Consensus 481 ~r 482 (699)
+|
T Consensus 145 ~R 146 (225)
T KOG3220|consen 145 ER 146 (225)
T ss_pred Hh
Confidence 55
No 242
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.045 Score=64.54 Aligned_cols=151 Identities=14% Similarity=0.094 Sum_probs=73.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCC------CceEe-ehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGH------DTKHF-NVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALA 422 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi------~tdv~-~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~ 422 (699)
-+-.++|+|-+|.||||+|+.|++.|...+- ...-- .-...++...|...+....+......++.+.++....
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~ 116 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKA 116 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHH
Confidence 4567999999999999999999999875221 10000 0011122222221221111111111222222222211
Q ss_pred HHHHHHHHhcCCeEEEEeCCCC-CHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHH
Q 005388 423 MEDMISWMHEGGQVGIFDATNS-SRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (699)
Q Consensus 423 l~dl~~~L~~~G~vVIlDAtn~-~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~ 500 (699)
.. .-......++|+|-... +...-+.+.+. .+-.-.++||-+ |++...|-.-|+.|.. .-.+... +.++. .
T Consensus 117 ~~---~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILa-Ttep~kLlpTIrSRCq-~f~f~~l-s~eei-~ 189 (700)
T PRK12323 117 VY---APTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILA-TTDPQKIPVTVLSRCL-QFNLKQM-PPGHI-V 189 (700)
T ss_pred Hh---chhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEE-eCChHhhhhHHHHHHH-hcccCCC-ChHHH-H
Confidence 10 00112246899998765 34444444444 443334455544 6777777777776654 4455554 44444 3
Q ss_pred HHHHHHH
Q 005388 501 DFKNRLA 507 (699)
Q Consensus 501 d~~~Ri~ 507 (699)
.+.+++-
T Consensus 190 ~~L~~Il 196 (700)
T PRK12323 190 SHLDAIL 196 (700)
T ss_pred HHHHHHH
Confidence 4444443
No 243
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.35 E-value=0.057 Score=61.72 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=76.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCce-Eee-hhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK-HFN-VGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~td-v~~-~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~ 427 (699)
-+-.++|+|.||+||||+|+.|++.|.-...... ..+ -...+....+...+-...+.....+++...++...+..
T Consensus 39 i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~--- 115 (484)
T PRK14956 39 IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKF--- 115 (484)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHh---
Confidence 3457999999999999999999999864321110 000 00112222222111111121111122222222211110
Q ss_pred HHHhcCCeEEEEeCCCC-CHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHH
Q 005388 428 SWMHEGGQVGIFDATNS-SRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 505 (699)
Q Consensus 428 ~~L~~~G~vVIlDAtn~-~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~R 505 (699)
.-......++|+|-... +.+.-+.+... .+....++||= .|+....+...|..|.. .=++... +.++ +..+.++
T Consensus 116 ~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFIL-aTte~~kI~~TI~SRCq-~~~f~~l-s~~~-i~~~L~~ 191 (484)
T PRK14956 116 APMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFIL-ATTEFHKIPETILSRCQ-DFIFKKV-PLSV-LQDYSEK 191 (484)
T ss_pred hhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEe-ecCChhhccHHHHhhhh-eeeecCC-CHHH-HHHHHHH
Confidence 00112246899998765 44444544444 44445667774 46667777777877653 3345544 4433 4566666
Q ss_pred HHhh
Q 005388 506 LANY 509 (699)
Q Consensus 506 i~~y 509 (699)
+...
T Consensus 192 i~~~ 195 (484)
T PRK14956 192 LCKI 195 (484)
T ss_pred HHHH
Confidence 6544
No 244
>PLN02840 tRNA dimethylallyltransferase
Probab=96.31 E-value=0.0059 Score=68.49 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=28.6
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCce
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~td 383 (699)
..+.+|+++|.+||||||+|..|++.++...+..|
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~D 53 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISAD 53 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEecc
Confidence 45668999999999999999999999875444443
No 245
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=96.28 E-value=0.022 Score=63.71 Aligned_cols=31 Identities=32% Similarity=0.269 Sum_probs=24.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceE
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv 384 (699)
.|.++|.+||||||+|+.|++ ++...+++|.
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~ 33 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADV 33 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEehHH
Confidence 589999999999999999997 5554444443
No 246
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.28 E-value=0.06 Score=54.56 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=32.2
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
....+++++|-||+||||+|.+++..+...+.++-.++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 356789999999999999999999888766666666644
No 247
>PRK06893 DNA replication initiation factor; Validated
Probab=96.25 E-value=0.074 Score=54.88 Aligned_cols=35 Identities=9% Similarity=0.017 Sum_probs=29.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
.++++|-||+|||+|+++++..+...+.++..++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 68999999999999999999998777766666644
No 248
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=96.25 E-value=0.04 Score=54.26 Aligned_cols=121 Identities=12% Similarity=0.139 Sum_probs=62.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCC-CCCcCCCCHHHHHHHHH------------
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-ADFFRADNPEGMEARNE------------ 417 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~-~~f~~~~~~~~~~~~~~------------ 417 (699)
..+|+++|.+|+||-||-......|.... +..+. ||....+... .+--+.-.+..+..++.
T Consensus 5 G~lI~vvGPSGAGKDtl~~~ar~~l~~~~-r~~fv-----rRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhG 78 (192)
T COG3709 5 GRLIAVVGPSGAGKDTLLDAARARLAGRP-RLHFV-----RRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHG 78 (192)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHhccCC-ceEEE-----EEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcC
Confidence 57899999999999999988888876431 11222 3322111100 00001112222222221
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhcc
Q 005388 418 VAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ 485 (699)
Q Consensus 418 vA~~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~ 485 (699)
+.--+=.++..||.. |.+||+.+. +...-.++.. |+-+.+.|+...++++.+|+..|.++
T Consensus 79 L~Ygip~eId~wl~~-G~vvl~NgS---Ra~Lp~arrr----y~~Llvv~ita~p~VLaqRL~~RGRE 138 (192)
T COG3709 79 LSYGIPAEIDLWLAA-GDVVLVNGS---RAVLPQARRR----YPQLLVVCITASPEVLAQRLAERGRE 138 (192)
T ss_pred ccccCchhHHHHHhC-CCEEEEecc---HhhhHHHHHh----hhcceeEEEecCHHHHHHHHHHhccC
Confidence 011112345556665 999998543 3222222222 11223334455799999999999763
No 249
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.24 E-value=0.015 Score=69.78 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=27.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCce
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~td 383 (699)
+|.+.|.|||||||+|+.|+++|++..+++-
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g 33 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTG 33 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecC
Confidence 6899999999999999999999987655543
No 250
>PRK12377 putative replication protein; Provisional
Probab=96.22 E-value=0.054 Score=56.96 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=34.8
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
.-++|.|-||+|||+||.+|+..+...+..+..++..+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 46899999999999999999999988888887777655533
No 251
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.029 Score=61.92 Aligned_cols=58 Identities=22% Similarity=0.246 Sum_probs=37.6
Q ss_pred cccccccccCCCCCCccchhhHHHHHhhhcCCCCCccE-EEEEEccCCCChhHHHHHHHHHHh
Q 005388 315 IDLKLDTETKNSMPAAAGAVAAAAVADQMLGPKEHRHL-AIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 315 ~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~-lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
++|.++..+++-+.|+ +.-+-+..+++.-. .+|+ -|+|+|.||+|||-||++++-..+
T Consensus 212 ~DIagl~~AK~lL~EA---VvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEA---VVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred HhhcchHHHHHHHHHH---HhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 4677776666655442 33333333333222 2344 699999999999999999998855
No 252
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.21 E-value=0.035 Score=66.33 Aligned_cols=152 Identities=13% Similarity=0.077 Sum_probs=74.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcC-CCceEee-hhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFN-VGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~g-i~tdv~~-~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~ 427 (699)
-+-.++|+|-+|+||||+|+.|++.|.... ....--. -...++...+...+....+......++.+.++... +.
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~----a~ 112 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER----AV 112 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHH----HH
Confidence 456788999999999999999999987431 1110000 01112222221111101111111222222222221 11
Q ss_pred HH-HhcCCeEEEEeCCCCC-HHHHHHH-HHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHH
Q 005388 428 SW-MHEGGQVGIFDATNSS-RKRRNML-MKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (699)
Q Consensus 428 ~~-L~~~G~vVIlDAtn~~-~e~R~~l-~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~ 504 (699)
.. ......++|||-.... ....+.+ +.+.+..-.++||-+ |++...|-.-|+.|.. .-+++.. ..++. ..+++
T Consensus 113 ~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILa-Ttd~~KIp~TIrSRCq-~f~Fk~L-s~eeI-v~~L~ 188 (830)
T PRK07003 113 YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILA-TTDPQKIPVTVLSRCL-QFNLKQM-PAGHI-VSHLE 188 (830)
T ss_pred hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEE-ECChhhccchhhhheE-EEecCCc-CHHHH-HHHHH
Confidence 11 1123578999987654 3433444 444443334555544 6777777666766654 3456555 44444 44445
Q ss_pred HHHhh
Q 005388 505 RLANY 509 (699)
Q Consensus 505 Ri~~y 509 (699)
+|...
T Consensus 189 ~Il~~ 193 (830)
T PRK07003 189 RILGE 193 (830)
T ss_pred HHHHH
Confidence 54433
No 253
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.21 E-value=0.0079 Score=65.10 Aligned_cols=29 Identities=38% Similarity=0.395 Sum_probs=25.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
.+.+|+++|.+|||||++|..|++.++..
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~ 31 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGE 31 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCc
Confidence 45799999999999999999999997643
No 254
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.20 E-value=0.016 Score=50.16 Aligned_cols=54 Identities=22% Similarity=0.473 Sum_probs=44.8
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEEe
Q 005388 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLK 96 (699)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~~ 96 (699)
.|+|++.||. ...+.|.|+-. +|+ .++|++...+.|++++.+++ ...+|||++-
T Consensus 3 ~vtf~~~ap~---a~~V~v~G~fn---~W~---~~~m~~~~~G~w~~~~~l~~--G~y~Ykf~vd 56 (82)
T cd02861 3 PVVFAYRGPE---ADSVYLAGSFN---NWN---AIPMEREGDGLWVVTVELRP--GRYEYKFVVD 56 (82)
T ss_pred cEEEEEECCC---CCEEEEEeECC---CCC---cccCEECCCCcEEEEEeCCC--CcEEEEEEEC
Confidence 5899999994 37899998765 787 68999988899999998775 4579999984
No 255
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.035 Score=62.43 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=35.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHH-hhcCCCceEeehhhHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYL-RWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L-~~~gi~tdv~~~gdyRr 392 (699)
++.+|+++|.+|+||||++.+|+..+ ...|.++-+++.|.||-
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 46789999999999999999999765 45677788888888765
No 256
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.022 Score=63.25 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=37.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
++.+|+++|..|+||||++..|+.++...+.++-+++.|.||-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 4678999999999999999999998877788888888888854
No 257
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.087 Score=58.96 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=25.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
-+-.++|+|.||+||||+|+.+++.|..
T Consensus 37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 37 VGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567999999999999999999999875
No 258
>CHL00181 cbbX CbbX; Provisional
Probab=96.18 E-value=0.13 Score=55.19 Aligned_cols=31 Identities=35% Similarity=0.440 Sum_probs=26.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCC
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi 380 (699)
.+.-|++.|-||+||||+|+.+++.+...|+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 3556899999999999999999998865554
No 259
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.16 E-value=0.04 Score=50.11 Aligned_cols=36 Identities=28% Similarity=0.267 Sum_probs=27.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
+..++++|-||+|||++++.+++.+...+.....++
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 446889999999999999999998764444444443
No 260
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.09 E-value=0.036 Score=56.18 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=31.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
.+..|+++|-||+||||+|+.+++++...+.+...++..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 455799999999999999999999987666666566543
No 261
>PRK13768 GTPase; Provisional
Probab=96.08 E-value=0.013 Score=61.65 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=34.1
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
+++|++.|.+|+||||++..++..+...|.++-+++.|
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D 39 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLD 39 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECC
Confidence 46899999999999999999999998888888888764
No 262
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.05 E-value=0.074 Score=64.65 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=25.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
-+-.++|+|.||+||||+|+.|++.|..
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 4567899999999999999999999874
No 263
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.00 E-value=0.073 Score=61.02 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=24.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
-+-.++|+|.||+||||+|+.+++.+.-
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4557899999999999999999999863
No 264
>PLN02796 D-glycerate 3-kinase
Probab=95.98 E-value=0.0076 Score=66.03 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=34.4
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
.+|++|.++|.+||||||+++.|...+...+..+-.+..|++
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 478999999999999999999999998766655555655544
No 265
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.98 E-value=0.12 Score=57.04 Aligned_cols=27 Identities=37% Similarity=0.358 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
-+-.++++|.||+||||+|+.+++.+.
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 456799999999999999999999986
No 266
>PF13173 AAA_14: AAA domain
Probab=95.97 E-value=0.051 Score=50.67 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=49.5
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 431 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~ 431 (699)
.++++.|..++||||+++++++.+. ..-+.-.++.++.+... .. ..++....+ +...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~-----------------~~-~~~~~~~~~----~~~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRR-----------------LA-DPDLLEYFL----ELIK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHH-----------------Hh-hhhhHHHHH----Hhhc
Confidence 4799999999999999999998865 22233334444332211 00 000111111 1112
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Q 005388 432 EGGQVGIFDATNSSRKRRNMLMKMA 456 (699)
Q Consensus 432 ~~G~vVIlDAtn~~~e~R~~l~el~ 456 (699)
.+...+++|-....+.....+..+.
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~ 84 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLV 84 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHH
Confidence 2467899999988888777777773
No 267
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.95 E-value=0.079 Score=54.95 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=30.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gd 389 (699)
.++++|.||+||||++++++.++...+.++..++.++
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 6899999999999999999998887676666665543
No 268
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.94 E-value=0.1 Score=53.22 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=32.6
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
....+++++|.||+|||++|.+++...-..+.++..++.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3567999999999999999999998776566666666554
No 269
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.91 E-value=0.0094 Score=64.02 Aligned_cols=43 Identities=21% Similarity=0.204 Sum_probs=33.5
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhc--CCCceEeehhhH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 390 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~--gi~tdv~~~gdy 390 (699)
...|.+|-+.|.+||||||+|+.|...+... ...+.+++.|+|
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f 103 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF 103 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence 3578999999999999999999999888632 335566666654
No 270
>PRK08116 hypothetical protein; Validated
Probab=95.90 E-value=0.062 Score=57.04 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=33.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
..-++|.|-||+|||+||.+++.+|...+..+..++..++
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~l 153 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQL 153 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3458999999999999999999999877877777776554
No 271
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.87 E-value=0.087 Score=55.29 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=34.1
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
..++|.|-||+|||+||.+|+.+|...+..+.+++..++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l 138 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI 138 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH
Confidence 368999999999999999999999888888888877555
No 272
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.87 E-value=0.11 Score=53.36 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=31.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc-CCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~-gi~tdv~~~ 387 (699)
+.-+++++|.||+|||+++..++..+... +.++-.|+.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 45689999999999999999998877655 777777764
No 273
>PLN03025 replication factor C subunit; Provisional
Probab=95.86 E-value=0.072 Score=57.65 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.2
Q ss_pred EEEEccCCCChhHHHHHHHHHHh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~ 376 (699)
++++|-||+||||+|+.+++.+.
T Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 67899999999999999999874
No 274
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=95.83 E-value=0.037 Score=65.96 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=28.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceE
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv 384 (699)
..+|.+.|.+||||||+|+.|+++|++..+++..
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~ 475 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGA 475 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHH
Confidence 4578899999999999999999999887655543
No 275
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.83 E-value=0.0098 Score=63.48 Aligned_cols=42 Identities=33% Similarity=0.362 Sum_probs=36.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc-C-CCceEeehhhHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-G-HDTKHFNVGKYR 391 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~-g-i~tdv~~~gdyR 391 (699)
++.+|+|+|.+|+||||++.+|+.++... + .++-+++.|.||
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 56799999999999999999999998765 4 788888877764
No 276
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.80 E-value=0.01 Score=66.50 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=35.1
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
..+|++|-+.|.+||||||+++.|...+...+.++-++..|+|
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf 251 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDF 251 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence 3478999999999999999999999887665666666766655
No 277
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.78 E-value=0.089 Score=55.27 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=24.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcC
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~g 379 (699)
..-+++.|.||+||||+|+.+++.+...+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 34588999999999999999999886544
No 278
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.78 E-value=0.013 Score=58.39 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=30.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
.+.+|.++|.+||||||+.+.|.+.|...++++-++
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~I 40 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEE
Confidence 456899999999999999999999998777666555
No 279
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.76 E-value=0.0082 Score=62.59 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=26.9
Q ss_pred EEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 356 LVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 356 mvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
++|.|||||||+++.+.+++...+.++.++|.|
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 479999999999999999999999999999875
No 280
>PRK05973 replicative DNA helicase; Provisional
Probab=95.75 E-value=0.011 Score=61.69 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=31.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
+.-++++.|-||+|||++|..++...-..|.++-.|+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 55689999999999999999999876666777766654
No 281
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.01 Score=64.06 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=24.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
-..+|+++|.||+|||+|+++|+++|.-
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 3458999999999999999999999864
No 282
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=95.74 E-value=0.088 Score=55.86 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=68.5
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
..|+||+|-|+-||||..+-+.|...|.-.|+++..|..-.- .+..+. -+.....
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~-----------------eE~~~p--------~lWRfw~ 108 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSA-----------------EELDHD--------FLWRIHK 108 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCH-----------------HHHcCc--------hHHHHHH
Confidence 469999999999999999999999998877766655521000 111111 1111111
Q ss_pred HHhcCCeEEEEeCCCCCHHH-------------HHHHHH---H----HcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 429 WMHEGGQVGIFDATNSSRKR-------------RNMLMK---M----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~-------------R~~l~e---l----~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
.|=..|.++|+|-+...+.. +..+.+ + ...|+.++=+-+.. +.++.++|++.+..
T Consensus 109 ~lP~~G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhI-sk~eQ~kRl~~r~~ 183 (264)
T TIGR03709 109 ALPERGEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHI-SKEEQKKRFLARLD 183 (264)
T ss_pred hCCCCCeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeC-CHHHHHHHHHHHhc
Confidence 23346999999987665421 222221 1 45677664444444 48999999988865
No 283
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=95.73 E-value=0.1 Score=54.95 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=20.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
+||++||+|+|||+-.+.|+. ++|.
T Consensus 3 lvIVTGlSGAGKsvAl~~lED-lGyy 27 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLED-LGYY 27 (286)
T ss_pred EEEEecCCCCcHHHHHHHHHh-cCee
Confidence 799999999999998888874 4554
No 284
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.70 E-value=0.0096 Score=65.56 Aligned_cols=30 Identities=30% Similarity=0.288 Sum_probs=26.7
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
..++.+++|+|.||+||||+|++|++.|+.
T Consensus 75 ~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 75 EERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345788999999999999999999999875
No 285
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.68 E-value=0.095 Score=52.70 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=29.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
+..++.++|.||+|||++|.+++......+.++-.++
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5679999999999999999999987765565555553
No 286
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.68 E-value=0.014 Score=61.76 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=37.2
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
..+|.+|+.+|+.||||||+.++|..+|....-+-.++|.|
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLD 56 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLD 56 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCC
Confidence 45789999999999999999999999999888888888886
No 287
>PRK13695 putative NTPase; Provisional
Probab=95.67 E-value=0.11 Score=51.01 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=24.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCC
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~ 381 (699)
-|+++|.||+||||+++.|...+...|+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~ 30 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYK 30 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 58999999999999999999887644544
No 288
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.65 E-value=0.041 Score=53.25 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=18.2
Q ss_pred EEEEccCCCChhHHHHHHHHH
Q 005388 354 IVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~ 374 (699)
|+++|-||+|||||++.|+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999988
No 289
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.65 E-value=0.032 Score=51.30 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.+.+++++|-||+|||++++.+.+.+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 4568999999999999999999998864
No 290
>PRK08727 hypothetical protein; Validated
Probab=95.63 E-value=0.14 Score=53.04 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=30.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
.|+++|-+|+|||+++++++..+...+.++..++..
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 499999999999999999999888777777666543
No 291
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.63 E-value=0.012 Score=57.40 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=30.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
+|.++|.+||||||++.+|.+.|...|.++-++
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 578999999999999999999998888888777
No 292
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.63 E-value=0.2 Score=59.20 Aligned_cols=140 Identities=17% Similarity=0.191 Sum_probs=66.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCC-ceEeeh-hhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHD-TKHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~-tdv~~~-gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
+-.++|+|-||+||||+|+.|++.|.-.... ..-.+. ...|+...+...+..+.+......++....+.. ...
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~-----~~~ 112 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKE-----AIG 112 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHHHHHHHH-----HHH
Confidence 4579999999999999999999998642110 001111 112333333222211122111111222111111 111
Q ss_pred H--HhcCCeEEEEeCC-CCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHH
Q 005388 429 W--MHEGGQVGIFDAT-NSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAG 498 (699)
Q Consensus 429 ~--L~~~G~vVIlDAt-n~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~a 498 (699)
+ +.....++|+|-. ..+.+..+.+... .+..-.++||- .|++...+...|..|.. .-.+... +.+++
T Consensus 113 ~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifIL-aTt~~~kll~TI~SRcq-~i~F~pL-s~~eL 183 (624)
T PRK14959 113 YAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVL-ATTEPHKFPVTIVSRCQ-HFTFTRL-SEAGL 183 (624)
T ss_pred hhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEE-ecCChhhhhHHHHhhhh-ccccCCC-CHHHH
Confidence 1 1223568888855 4455555555555 33223444553 36666655555655543 2345444 44444
No 293
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.019 Score=58.23 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=29.0
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
-++|-+.|...|||||||+.|.+++... .+++.|||
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~----~lIhqDDF 39 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGC----SLIHQDDF 39 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCC----eeeccccc
Confidence 3678889999999999999999987643 36766666
No 294
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.56 E-value=0.12 Score=50.56 Aligned_cols=35 Identities=23% Similarity=0.132 Sum_probs=28.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
++++.|-||+|||++|.+++...-..|.++-.++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 37899999999999999998776666777766654
No 295
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.55 E-value=0.18 Score=60.13 Aligned_cols=29 Identities=34% Similarity=0.355 Sum_probs=25.5
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.-+-.++|+|-||+||||+|+.|++.|.-
T Consensus 36 rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 36 RLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 34568999999999999999999999864
No 296
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.55 E-value=0.038 Score=57.24 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=22.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
=++|.|.||.||||||+-|+..++
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~ 75 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELG 75 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred eEEEECCCccchhHHHHHHHhccC
Confidence 489999999999999999999865
No 297
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=95.54 E-value=0.026 Score=60.12 Aligned_cols=45 Identities=20% Similarity=0.196 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccC-------CCCEEEEcChHHHHHHHhhh
Q 005388 582 TILSDAGEIYAKKLANFVEKRLKSE-------RAASIWTSTLQRTILTASPI 626 (699)
Q Consensus 582 ~pLTe~G~~QA~~La~~L~~~l~~~-------~~~~V~sSpL~RA~QTA~~i 626 (699)
..||+.|.+|...+|++++++.... ..-.|++|...||++||+.+
T Consensus 61 g~LT~~G~~q~~~lG~~lr~~Y~~l~~~~~~~~~v~vrSt~~~Rt~~Sa~af 112 (347)
T PF00328_consen 61 GQLTPRGMEQHYQLGKRLRERYPGLFPDNYNPEQVYVRSTNKQRTIQSAQAF 112 (347)
T ss_dssp TSBTHHHHHHHHHHHHHHHHHHHTSSTSSS-TTTEEEEEESSHHHHHHHHHH
T ss_pred CcccchhhhHHHHHHHHHHHHHHHhccccccccceeEEEeccchHHHHHHHH
Confidence 3499999999999999999886432 23468999999999999988
No 298
>PRK08181 transposase; Validated
Probab=95.53 E-value=0.079 Score=56.37 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=32.7
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
.-++|+|-||+|||+||.+|+..+...|.++..++..+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L 145 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDL 145 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHH
Confidence 359999999999999999999998877888777765444
No 299
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.52 E-value=0.1 Score=55.74 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=25.3
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCC
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi 380 (699)
.-+++.|.||+||||+|+.+++.+...+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 45899999999999999999999876654
No 300
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.19 Score=55.95 Aligned_cols=42 Identities=31% Similarity=0.369 Sum_probs=33.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh-hcC-CCceEeehhhHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLG-HDTKHFNVGKYR 391 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~-~~g-i~tdv~~~gdyR 391 (699)
++.+|+|+|.+|+||||++.+|+.++. ..| .++-++..|.||
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 456899999999999999999998764 334 456677777775
No 301
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.11 Score=58.13 Aligned_cols=44 Identities=30% Similarity=0.351 Sum_probs=37.0
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhh----cCCCceEeehhhHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW----LGHDTKHFNVGKYRR 392 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~----~gi~tdv~~~gdyRr 392 (699)
..|.+|+|+|.+|+||||++.+|+.++.. .+.++-+++.|.||-
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 35779999999999999999999988863 366788888888864
No 302
>PRK05642 DNA replication initiation factor; Validated
Probab=95.48 E-value=0.1 Score=54.04 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=31.4
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
-.++++|-+|+|||+|+++++.++...+.++..++.+++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~ 84 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL 84 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence 357899999999999999999887766777777766443
No 303
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.45 E-value=0.1 Score=54.72 Aligned_cols=38 Identities=18% Similarity=0.082 Sum_probs=30.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc-CCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~-gi~tdv~~~ 387 (699)
...++++.|-||+||||++.+++..+-.. +.++-.++.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44589999999999999999999877544 777766665
No 304
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.45 E-value=0.35 Score=51.79 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=24.9
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+..|-+++++|.||+||||+|+.+++.++
T Consensus 40 ~~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 40 GRIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 34567889999999999999999998863
No 305
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.45 E-value=0.22 Score=56.61 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=30.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhc--CCCceEeehhhH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 390 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~--gi~tdv~~~gdy 390 (699)
-++++|-||+|||+|+++++..+... +.++..++..++
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~ 189 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF 189 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 37889999999999999999998765 455555665444
No 306
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.064 Score=62.57 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=24.9
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+.|.=|+|.|.||+|||++|++|+..-+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~ 493 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAG 493 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhc
Confidence 4677799999999999999999998764
No 307
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.41 E-value=0.24 Score=58.77 Aligned_cols=150 Identities=19% Similarity=0.106 Sum_probs=72.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcC-CCce-EeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTK-HFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~g-i~td-v~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~ 427 (699)
-+-.++|+|-+|+||||+|+.|++.|.-.. .... .-.-...|+...|...+....+......++.+.++... +.
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~----~~ 112 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDN----VQ 112 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHH----HH
Confidence 455799999999999999999999987531 1110 00001123322232222111122111112222222211 11
Q ss_pred HH-HhcCCeEEEEeCCCC-CHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHH
Q 005388 428 SW-MHEGGQVGIFDATNS-SRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (699)
Q Consensus 428 ~~-L~~~G~vVIlDAtn~-~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~ 504 (699)
.. ......++|+|-... +...-+.+.+. .+-.-.++||-+ |+++..+-.-|+-|.. .-.+... +.++. ..+.+
T Consensus 113 ~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~-Tt~~~kLl~TI~SRC~-~~~f~~L-s~~ei-~~~L~ 188 (647)
T PRK07994 113 YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA-TTDPQKLPVTILSRCL-QFHLKAL-DVEQI-RQQLE 188 (647)
T ss_pred hhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEe-cCCccccchHHHhhhe-EeeCCCC-CHHHH-HHHHH
Confidence 00 112246899997654 45455555544 443334445544 6666666555655543 3345544 45544 44444
Q ss_pred HHH
Q 005388 505 RLA 507 (699)
Q Consensus 505 Ri~ 507 (699)
++-
T Consensus 189 ~il 191 (647)
T PRK07994 189 HIL 191 (647)
T ss_pred HHH
Confidence 443
No 308
>PLN02748 tRNA dimethylallyltransferase
Probab=95.40 E-value=0.02 Score=65.23 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=50.8
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCC-----------C-CCCcCCCCHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQ-----------S-ADFFRADNPEGMEARN 416 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~-----------~-~~f~~~~~~~~~~~~~ 416 (699)
..+.+|+++|.+|||||+||..|++.++...++.|.+ --||.+-.+.+. . .++-+....-.+....
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Dsm--QVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~ 97 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSM--QVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFR 97 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchh--eeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHH
Confidence 3566899999999999999999999976433333321 023432222111 0 1233333333344444
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Q 005388 417 EVAALAMEDMISWMHEGGQVGIFDATNSS 445 (699)
Q Consensus 417 ~vA~~~l~dl~~~L~~~G~vVIlDAtn~~ 445 (699)
..|..+++++ +.++...+|+-+|+.+
T Consensus 98 ~~A~~~I~~I---~~rgk~PIlVGGTglY 123 (468)
T PLN02748 98 DHAVPLIEEI---LSRNGLPVIVGGTNYY 123 (468)
T ss_pred HHHHHHHHHH---HhcCCCeEEEcChHHH
Confidence 5555555433 3344556666666543
No 309
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=95.39 E-value=0.33 Score=50.59 Aligned_cols=110 Identities=17% Similarity=0.215 Sum_probs=68.9
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
..|+||+|-|+.||||.-+.+.|...|.-.++++..|..- ..+ +...--+...-.
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~p------------------t~e-------E~~~p~lwRfw~ 83 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKP------------------SDR-------ERTQWYFQRYVQ 83 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCC------------------CHH-------HHcChHHHHHHH
Confidence 4699999999999999999999999988777776655221 011 011111221122
Q ss_pred HHhcCCeEEEEeCCCCCHHH-------------HHHHH---HH----HcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 429 WMHEGGQVGIFDATNSSRKR-------------RNMLM---KM----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~-------------R~~l~---el----~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
-|=..|+++|+|-....... ...+. .+ ...|+.++=+-+.. +.+.-++|++.+..
T Consensus 84 ~lP~~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhI-sk~eQ~kRl~~r~~ 158 (230)
T TIGR03707 84 HLPAAGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSV-SREEQLRRFKARID 158 (230)
T ss_pred hCCCCCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC-CHHHHHHHHHHHhc
Confidence 23346999999887766522 11111 11 45677764444444 48999999988865
No 310
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.37 E-value=0.12 Score=58.39 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=35.7
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh--hcCCCceEeehhhHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYRR 392 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~--~~gi~tdv~~~gdyRr 392 (699)
+.+|+|+|.+|+||||++..|+.++. ..+.++-+++.|.||-
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~ 264 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI 264 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence 45899999999999999999998886 4467888899888863
No 311
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.36 E-value=0.22 Score=58.56 Aligned_cols=148 Identities=16% Similarity=0.117 Sum_probs=68.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCc-eEeeh-hhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDT-KHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~t-dv~~~-gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~ 427 (699)
.+-.++++|.||+||||+|+.+++.|.-..... +.-+. +..|+...+...+....+.....++....++...+.. .
T Consensus 37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~--~ 114 (605)
T PRK05896 37 LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINY--L 114 (605)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHh--c
Confidence 456799999999999999999999986322111 00000 1112222222111111111111223322222222110 1
Q ss_pred HHHhcCCeEEEEeCCC-CCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHH
Q 005388 428 SWMHEGGQVGIFDATN-SSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 503 (699)
Q Consensus 428 ~~L~~~G~vVIlDAtn-~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~ 503 (699)
. +.....++|+|-.. .+.+..+.+... .+..-.++||- .|+.+.-+-.-|+.|.. .-++... +.+++..-+.
T Consensus 115 P-~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL-~Tt~~~KLl~TI~SRcq-~ieF~~L-s~~eL~~~L~ 188 (605)
T PRK05896 115 P-TTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIF-ATTEFQKIPLTIISRCQ-RYNFKKL-NNSELQELLK 188 (605)
T ss_pred h-hhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEE-ECCChHhhhHHHHhhhh-hcccCCC-CHHHHHHHHH
Confidence 1 11235688888653 344444555554 33323344443 35566666555655543 3345544 4555433333
No 312
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.35 E-value=0.23 Score=57.87 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.+-.++|+|.||+||||+|+.|++.|.-
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4557899999999999999999999863
No 313
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.35 E-value=0.25 Score=57.24 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=25.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
-+-.++|+|-||+||||+|+.|++.|..
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4568999999999999999999999874
No 314
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.32 E-value=0.11 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLT 372 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La 372 (699)
.|.+++++|.||+||||+|+.|+
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcC
Confidence 46779999999999999999885
No 315
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.32 E-value=0.02 Score=48.91 Aligned_cols=34 Identities=32% Similarity=0.303 Sum_probs=29.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
+|+++|.+|+||||++..|+..|...+.++-+++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4788999999999999999999988787776663
No 316
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.31 E-value=0.2 Score=61.04 Aligned_cols=151 Identities=20% Similarity=0.194 Sum_probs=70.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceE--eehhhHHHHhhCCCCCCCCc--CCCCHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH--FNVGKYRRLKHGVNQSADFF--RADNPEGMEARNEVAALAMED 425 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv--~~~gdyRr~~~g~~~~~~f~--~~~~~~~~~~~~~vA~~~l~d 425 (699)
-+..++|+|.+|+||||+|+.|++.|.-....+.. -.-...|+...+.....++. +......++.+.++...+.
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~-- 113 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAF-- 113 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHH--
Confidence 45578999999999999999999998632111100 00011222222211122221 1111111222222221110
Q ss_pred HHHHHhcCCeEEEEeCC-CCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHH
Q 005388 426 MISWMHEGGQVGIFDAT-NSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 503 (699)
Q Consensus 426 l~~~L~~~G~vVIlDAt-n~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~ 503 (699)
+.-+.....++|||-. ..+.+--+.+.++ .+-.-.++||-+ |++.+.|-.-|+.|.. .-.|... ..++ +..+.
T Consensus 114 -~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~-tt~~~kLl~TIrSRc~-~v~F~~l-~~~~-l~~~L 188 (824)
T PRK07764 114 -FAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFA-TTEPDKVIGTIRSRTH-HYPFRLV-PPEV-MRGYL 188 (824)
T ss_pred -hchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEE-eCChhhhhHHHHhhee-EEEeeCC-CHHH-HHHHH
Confidence 0112234678888855 4455555555555 443334455533 5566655555665543 2234433 3433 34444
Q ss_pred HHHH
Q 005388 504 NRLA 507 (699)
Q Consensus 504 ~Ri~ 507 (699)
+++.
T Consensus 189 ~~il 192 (824)
T PRK07764 189 ERIC 192 (824)
T ss_pred HHHH
Confidence 4443
No 317
>PRK04296 thymidine kinase; Provisional
Probab=95.31 E-value=0.11 Score=52.10 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=30.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
..+++++|-||+||||++..++.++...+.++.++.
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 368999999999999999999988876677777773
No 318
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.31 E-value=0.34 Score=52.53 Aligned_cols=130 Identities=13% Similarity=0.125 Sum_probs=74.7
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L 430 (699)
+.-++|.|-||+|||+||.+|+..+...|+++..++..++-+.... .+. . + .+.+.++.+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~-----~~~-~-~-------------~~~~~l~~l 215 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN-----SIS-D-G-------------SVKEKIDAV 215 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH-----HHh-c-C-------------cHHHHHHHh
Confidence 3458999999999999999999999988999888876554221100 000 0 0 011112223
Q ss_pred hcCCeEEEEeCCCC---CHHHHHHHH-HH--Hc-CCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHH
Q 005388 431 HEGGQVGIFDATNS---SRKRRNMLM-KM--AE-GNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 503 (699)
Q Consensus 431 ~~~G~vVIlDAtn~---~~e~R~~l~-el--~~-~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~ 503 (699)
. .-.++|+|.... +...|..+. .+ .. .+-...++-+..+ .+.+.+.+....+ .|. -....+...
T Consensus 216 ~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~-~~el~~~~~~~~~--g~~-----e~~~a~ri~ 286 (306)
T PRK08939 216 K-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD-FDELEHHLAYTQR--GED-----ETWKAARIM 286 (306)
T ss_pred c-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC-HHHHHHHHhhhcc--Ccc-----hhhHHHHHH
Confidence 2 367899998864 455564443 33 12 2334556666665 5666666632221 110 112335678
Q ss_pred HHHHhh
Q 005388 504 NRLANY 509 (699)
Q Consensus 504 ~Ri~~y 509 (699)
+||...
T Consensus 287 dRI~~~ 292 (306)
T PRK08939 287 ERIRYL 292 (306)
T ss_pred HHHHHh
Confidence 888754
No 319
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=95.30 E-value=0.13 Score=51.02 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=24.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
+|.+.+-.|||++++|++|++.|+...++.+++
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii 33 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDREII 33 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-HHHH
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCHHHH
Confidence 688899999999999999999988655444333
No 320
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=95.30 E-value=0.52 Score=50.18 Aligned_cols=43 Identities=23% Similarity=0.215 Sum_probs=34.7
Q ss_pred HHhhhcCCCCCccEEEEEEccCCCChhHHHHHHHHHHhhcCCC
Q 005388 339 VADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (699)
Q Consensus 339 l~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~ 381 (699)
+.|.++.+.+....||++-|-=|+|||++|+.||+.|+.....
T Consensus 59 l~Dktskrf~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP 101 (393)
T KOG3877|consen 59 LKDKTSKRFHENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFP 101 (393)
T ss_pred hcchhhhhhcccceEEEEeCCcccCchhHHHHHHHHhCCcccc
Confidence 3355555666778899999999999999999999999865433
No 321
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.30 E-value=0.023 Score=55.71 Aligned_cols=34 Identities=29% Similarity=0.232 Sum_probs=30.3
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
.+|.++|.+||||||++.+|.+.|...|.++-++
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~i 35 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVI 35 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 3799999999999999999999999888777666
No 322
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.30 E-value=0.2 Score=57.87 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=24.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
+-.++|+|.||+||||+|+.|++.|.-
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 457999999999999999999999864
No 323
>PRK09087 hypothetical protein; Validated
Probab=95.27 E-value=0.089 Score=54.40 Aligned_cols=117 Identities=14% Similarity=0.052 Sum_probs=58.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCC-CC-CCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGV-NQ-SADFFRADNPEGMEARNEVAALAMEDMISWM 430 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~-~~-~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L 430 (699)
.++++|-+|||||||++.+++..+...++...+..+-.-....+. -- +..+.. ..++ .+-.++..+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~-~~~~-----------~lf~l~n~~ 113 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGG-FDET-----------GLFHLINSV 113 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCC-CCHH-----------HHHHHHHHH
Confidence 479999999999999999997754433222211110000000000 00 001111 1111 122233334
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHH---HcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 431 HEGGQVGIFDATNSSRKRRNMLMKM---AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 431 ~~~G~vVIlDAtn~~~e~R~~l~el---~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
.+.|..+|+-++..-.+......++ .+.+ ..+++.-.+.+.+.+-++++..
T Consensus 114 ~~~g~~ilits~~~p~~~~~~~~dL~SRl~~g---l~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 114 RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA---TVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred HhCCCeEEEECCCChHHhccccccHHHHHhCC---ceeecCCCCHHHHHHHHHHHHH
Confidence 4567778877776555443322333 2222 3566666777776666665543
No 324
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.27 E-value=0.32 Score=57.58 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=25.8
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.-+-.++|+|-+|+||||+|+.|++.|.-
T Consensus 36 rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 36 RLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34668999999999999999999999874
No 325
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.27 E-value=0.13 Score=57.86 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.6
Q ss_pred EEEEEccCCCChhHHHHHHHHHHh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
-++|+|.||+||||+|+.|++.++
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 577899999999999999998865
No 326
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.26 E-value=0.024 Score=52.64 Aligned_cols=35 Identities=34% Similarity=0.397 Sum_probs=30.9
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
|+++|.+|+||||++..|++++...+.++-+++.|
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D 36 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDAD 36 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 78999999999999999999998778777777654
No 327
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.23 E-value=0.059 Score=60.45 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
-...|+++|-+|||||||+++|+++++..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 34569999999999999999999987643
No 328
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.20 E-value=0.33 Score=52.67 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=25.3
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
..+-.++|+|.||+||||+|+.|++.|.-
T Consensus 34 ~~~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 34 RIAHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34568999999999999999999999863
No 329
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.18 E-value=0.025 Score=60.85 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=34.7
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
..+.+|.++|.||+||||+...|+..+...+.++-+++.|
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4577888999999999999999999998888888887665
No 330
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=95.17 E-value=0.018 Score=61.82 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.6
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
+|+++|.+|||||++|..|++.++.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~ 25 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNA 25 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCC
Confidence 5899999999999999999998654
No 331
>PRK06921 hypothetical protein; Provisional
Probab=95.14 E-value=0.24 Score=52.49 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=30.1
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhc-CCCceEeeh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNV 387 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~-gi~tdv~~~ 387 (699)
..-++|.|-||+|||+||.+|+..+... ++.+..+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 3468999999999999999999998766 666655543
No 332
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.13 E-value=0.13 Score=53.84 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=63.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc-CCCceEeehhhHHH-----Hh---hCCCCCCCCcCCCCHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKYRR-----LK---HGVNQSADFFRADNPEGMEARNEVAA 420 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~-gi~tdv~~~gdyRr-----~~---~g~~~~~~f~~~~~~~~~~~~~~vA~ 420 (699)
++-|+++.|.||.|||++|..++..+... +.++-.|+.+.-.+ .. .+.....-.........++.+.+.
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~-- 95 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAA-- 95 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHH--
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHH--
Confidence 45689999999999999999999988765 57888887642211 11 111110000011122223322222
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHH-HHHHHHH-Hc-CCceEEEEEE
Q 005388 421 LAMEDMISWMHEGGQVGIFDATNSSRKR-RNMLMKM-AE-GNCKIIFLET 467 (699)
Q Consensus 421 ~~l~dl~~~L~~~G~vVIlDAtn~~~e~-R~~l~el-~~-~~~~vifIE~ 467 (699)
...+.+ ....|.|....+.+. +..++.+ .+ .++.++||.-
T Consensus 96 ------~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDy 138 (259)
T PF03796_consen 96 ------AEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDY 138 (259)
T ss_dssp ------HHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred ------HHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEech
Confidence 222333 557888877777654 6666666 44 7888888875
No 333
>PRK06526 transposase; Provisional
Probab=95.13 E-value=0.091 Score=55.39 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=30.1
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
+.-++++|-||+|||++|..|+..+...|.++..+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 4458999999999999999999888777776655544
No 334
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.13 E-value=0.017 Score=59.19 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=28.6
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCce
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~td 383 (699)
++|.+=|..||||||+|+.|+++|++..++|=
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTG 36 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTG 36 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeeccc
Confidence 78889999999999999999999998776653
No 335
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.04 E-value=0.15 Score=52.81 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=27.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
+.-++++.|-||+|||++|.+++...-..|-++-.++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 5678999999999999999987755333455555553
No 336
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.03 E-value=0.19 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
+|+++|.+||||||+.+.|..++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 7999999999999999999988764
No 337
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.02 E-value=0.31 Score=45.32 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCChhHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
...|+++|.||+||||+...|...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998743
No 338
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=95.01 E-value=0.35 Score=55.65 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=70.7
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~ 427 (699)
...|++|+|-|+-||||++..+.|.+.|.-.|+++..+..-.- .+. ..--+....
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~-----------------eE~--------~~~flwRfw 91 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSD-----------------EER--------ERPPMWRFW 91 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCH-----------------HHh--------cCcHHHHHH
Confidence 3479999999999999999999999999988887666622111 111 111222222
Q ss_pred HHHhcCCeEEEEeCCCCCHH-------------HHHHHHH---H----HcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 428 SWMHEGGQVGIFDATNSSRK-------------RRNMLMK---M----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 428 ~~L~~~G~vVIlDAtn~~~e-------------~R~~l~e---l----~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
..|=..|.++|+|-+...+. .+..+.+ + ...|+.++=+-..+ +.++-++|+..|..
T Consensus 92 ~~lP~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhI-sk~EQ~kRl~~r~~ 167 (493)
T TIGR03708 92 RRLPPKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHL-SKKQQKERLKKLEK 167 (493)
T ss_pred HhCCCCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC-CHHHHHHHHHHHhc
Confidence 22334699999988766542 2222221 1 45677664444444 48899999988865
No 339
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.01 E-value=0.03 Score=53.65 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=28.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
+|.++|..+|||||+++.|..+|...|.+.-++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i 34 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI 34 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence 689999999999999999999999888887644
No 340
>PRK04195 replication factor C large subunit; Provisional
Probab=95.01 E-value=0.094 Score=60.15 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=28.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
+..++|+|.||+||||+|+.|++.++ .....+|..++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~---~~~ielnasd~ 75 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG---WEVIELNASDQ 75 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEccccc
Confidence 56799999999999999999999865 34444554433
No 341
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=94.99 E-value=0.072 Score=46.07 Aligned_cols=52 Identities=17% Similarity=0.442 Sum_probs=42.3
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEE
Q 005388 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLL 95 (699)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~ 95 (699)
-|+|+..+ ....+.|+|+=. +|++ .++|.+.... |.+.+++++ +..+|||++
T Consensus 3 ~v~f~~~~----~a~~V~v~G~F~---~W~~--~~pm~~~~~~-~~~~~~L~~--g~y~YkF~V 54 (79)
T cd02859 3 PTTFVWPG----GGKEVYVTGSFD---NWKK--KIPLEKSGKG-FSATLRLPP--GKYQYKFIV 54 (79)
T ss_pred EEEEEEcC----CCcEEEEEEEcC---CCCc--cccceECCCC-cEEEEEcCC--CCEEEEEEE
Confidence 36666666 568999999875 7986 6999998766 999999887 578999998
No 342
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.98 E-value=0.021 Score=53.52 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=21.6
Q ss_pred EEEEccCCCChhHHHHHHHHHHh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~ 376 (699)
|+++|-||+|||++|+.|++.++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999999984
No 343
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.98 E-value=0.32 Score=55.98 Aligned_cols=28 Identities=32% Similarity=0.331 Sum_probs=24.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
-+-.++|+|.||+||||+|+.|++.|.-
T Consensus 34 i~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 34 IPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred CCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 3557999999999999999999998863
No 344
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=94.98 E-value=0.11 Score=55.08 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=33.0
Q ss_pred CCCCccEEEEEEccCCCChhHHHHHHHHHHhhcCCC--ceEeeh
Q 005388 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHD--TKHFNV 387 (699)
Q Consensus 346 ~~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~--tdv~~~ 387 (699)
..++.|++|-++|-||+||||+|+.|+..|..-+-. ++++-.
T Consensus 77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpm 120 (283)
T COG1072 77 NNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTM 120 (283)
T ss_pred CCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEec
Confidence 346899999999999999999999999998744333 444433
No 345
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.97 E-value=0.022 Score=54.43 Aligned_cols=29 Identities=24% Similarity=0.106 Sum_probs=25.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
.+.+|++.|-+|+||||+++.|++.|+..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 45689999999999999999999998754
No 346
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.94 E-value=0.11 Score=56.24 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
..-++++.||+|||||||.|.|-+-.
T Consensus 53 ~GeIfViMGLSGSGKSTLvR~~NrLi 78 (386)
T COG4175 53 EGEIFVIMGLSGSGKSTLVRLLNRLI 78 (386)
T ss_pred CCeEEEEEecCCCCHHHHHHHHhccC
Confidence 35678889999999999999988654
No 347
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.92 E-value=0.036 Score=61.45 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=30.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhc--CCCceEeehhhHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKYRRL 393 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~--gi~tdv~~~gdyRr~ 393 (699)
=.||-|.||+||||||+.|+..++.. .++.......+.|+.
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i 92 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREI 92 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHH
Confidence 36788999999999999999998743 344445555666663
No 348
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.92 E-value=0.24 Score=57.46 Aligned_cols=42 Identities=33% Similarity=0.302 Sum_probs=33.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc--CCCceEeehhhHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKYR 391 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~--gi~tdv~~~gdyR 391 (699)
.+-+|.|+|.+|+||||++.+|+.++... +.++.+++.|.||
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 45688999999999999999999877544 3567778777775
No 349
>PF05729 NACHT: NACHT domain
Probab=94.90 E-value=0.024 Score=53.73 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=24.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcC
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLG 379 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~g 379 (699)
+++++|-||+||||+++.++..+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 689999999999999999999887554
No 350
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.90 E-value=0.15 Score=53.46 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=24.7
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
....+|.++|++|.||||+|+++++...
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~ 44 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLR 44 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccc
Confidence 4677999999999999999999997743
No 351
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.89 E-value=0.15 Score=52.16 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=31.2
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
-.++++|-||+|||++|+++++.+...+.....++..
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 3589999999999999999999887677777777653
No 352
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.88 E-value=0.25 Score=48.68 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=23.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+.-+++++|.||+||||++..|+..+.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999998775
No 353
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.88 E-value=0.5 Score=55.61 Aligned_cols=151 Identities=19% Similarity=0.161 Sum_probs=71.6
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCce--EeehhhHHHHhhCCCCCCCC--cCCCCHHHHHHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK--HFNVGKYRRLKHGVNQSADF--FRADNPEGMEARNEVAALAME 424 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~td--v~~~gdyRr~~~g~~~~~~f--~~~~~~~~~~~~~~vA~~~l~ 424 (699)
.-+-.++|+|.+|+||||+|+.|++.|........ .-.-...|....+.....++ .+.....+++...++...+
T Consensus 33 r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~-- 110 (584)
T PRK14952 33 RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRA-- 110 (584)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHH--
Confidence 35668999999999999999999999875321110 00001112211111111122 1111111233222222111
Q ss_pred HHHHH--HhcCCeEEEEeCCCC-CHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHH
Q 005388 425 DMISW--MHEGGQVGIFDATNS-SRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (699)
Q Consensus 425 dl~~~--L~~~G~vVIlDAtn~-~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~ 500 (699)
.+ +.....++|+|-... +.+--+.+... .+..-.++||-+ |++...+-.-|+.|.. .=++... +.++. .
T Consensus 111 ---~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~-tte~~kll~TI~SRc~-~~~F~~l-~~~~i-~ 183 (584)
T PRK14952 111 ---FYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFA-TTEPEKVLPTIRSRTH-HYPFRLL-PPRTM-R 183 (584)
T ss_pred ---HhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEE-eCChHhhHHHHHHhce-EEEeeCC-CHHHH-H
Confidence 11 123467899987644 44444444444 443334555533 4556655555655533 3345544 44443 4
Q ss_pred HHHHHHHh
Q 005388 501 DFKNRLAN 508 (699)
Q Consensus 501 d~~~Ri~~ 508 (699)
.+..++..
T Consensus 184 ~~L~~i~~ 191 (584)
T PRK14952 184 ALIARICE 191 (584)
T ss_pred HHHHHHHH
Confidence 44444443
No 354
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.86 E-value=0.32 Score=57.37 Aligned_cols=29 Identities=38% Similarity=0.406 Sum_probs=25.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
-+-.++|+|.+|+||||+|+.|++.|...
T Consensus 45 i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 45 IAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 45579999999999999999999998743
No 355
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=94.83 E-value=0.044 Score=56.99 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=30.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
+|.++|.+||||||++.+|+++|...|+++-++
T Consensus 3 vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi 35 (229)
T PRK14494 3 AIGVIGFKDSGKTTLIEKILKNLKERGYRVATA 35 (229)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 789999999999999999999999889888877
No 356
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.82 E-value=0.44 Score=56.02 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=68.4
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhc-CCCceEeeh-hhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM 426 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~-gi~tdv~~~-gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl 426 (699)
.-+-.++|+|-+|+||||+|+.|++.|.-. +....--+. ...|+...|...+-...+......++.+.++... +
T Consensus 36 ~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~----~ 111 (576)
T PRK14965 36 RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELREN----V 111 (576)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHH----H
Confidence 356789999999999999999999998632 111000000 0112222222221111111111122222222211 1
Q ss_pred HHH--HhcCCeEEEEeCCCC-CHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHH
Q 005388 427 ISW--MHEGGQVGIFDATNS-SRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAG 498 (699)
Q Consensus 427 ~~~--L~~~G~vVIlDAtn~-~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~a 498 (699)
.+ +.....++|+|-... +...-+.+.+. .+..-.++||- .|+++.-+-.-|+.|.. .=++... +.+++
T Consensus 112 -~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl-~t~~~~kl~~tI~SRc~-~~~f~~l-~~~~i 183 (576)
T PRK14965 112 -KYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIF-ATTEPHKVPITILSRCQ-RFDFRRI-PLQKI 183 (576)
T ss_pred -HhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEE-EeCChhhhhHHHHHhhh-hhhcCCC-CHHHH
Confidence 11 122356888987543 44444445544 44333455553 35666666666655543 3345544 44444
No 357
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.80 E-value=0.21 Score=56.37 Aligned_cols=31 Identities=23% Similarity=0.185 Sum_probs=26.1
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCC
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~ 381 (699)
|.-|+|+|.||+|||++|+.|++.++...+.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~ 80 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChhee
Confidence 5679999999999999999999997644433
No 358
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.78 E-value=0.048 Score=54.05 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=32.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh-hcCCCceEeehhhH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKY 390 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~-~~gi~tdv~~~gdy 390 (699)
...++|+|.+|+|||.+|++|++.|. -...+...+|...|
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc
Confidence 45799999999999999999999987 44456666776655
No 359
>PRK09183 transposase/IS protein; Provisional
Probab=94.76 E-value=0.3 Score=51.59 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=31.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
+..++++|-||+||||+|..|+..+...|.++..++..++
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l 141 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADL 141 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHH
Confidence 3467899999999999999998877667777766654333
No 360
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.75 E-value=0.66 Score=52.97 Aligned_cols=133 Identities=12% Similarity=0.176 Sum_probs=69.9
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhc--CCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 431 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~--gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~ 431 (699)
++++|-+|+|||+|+++++.++... +.++..++..++.+... ..+.. ....++++...+.
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~-----------------~~l~~-~~~~~~~~~~~~~ 205 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAV-----------------DILQK-THKEIEQFKNEIC 205 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH-----------------HHHHH-hhhHHHHHHHHhc
Confidence 7889999999999999999987643 45555565544422110 00000 0012223333333
Q ss_pred cCCeEEEEeCCCCC---HHHHHHHHHH----HcCCceEEEEEEEeCCHHH---HHHHHHHhhccCC--CCCCCCChHHHH
Q 005388 432 EGGQVGIFDATNSS---RKRRNMLMKM----AEGNCKIIFLETICNDRDI---IERNIRLKIQQSP--DYAEEPDFEAGL 499 (699)
Q Consensus 432 ~~G~vVIlDAtn~~---~e~R~~l~el----~~~~~~vifIE~~c~d~e~---i~rrI~~r~~~sp--D~s~~~d~e~al 499 (699)
.-.++|+|..... ....+.+..+ ...+- .+++-+..+ ++. +..|+..|-.... +... |+.+...
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k-~iIltsd~~-P~~l~~l~~rL~SR~~~Gl~~~L~~-pd~e~r~ 281 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDK-QLFFSSDKS-PELLNGFDNRLITRFNMGLSIAIQK-LDNKTAT 281 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCC-cEEEECCCC-HHHHhhccHHHHHHHhCCceeccCC-cCHHHHH
Confidence 3568888988443 3445555554 33333 344444344 333 3567776654222 2333 2566655
Q ss_pred HHHHHHHHh
Q 005388 500 QDFKNRLAN 508 (699)
Q Consensus 500 ~d~~~Ri~~ 508 (699)
+-+..+++.
T Consensus 282 ~iL~~~~~~ 290 (450)
T PRK14087 282 AIIKKEIKN 290 (450)
T ss_pred HHHHHHHHh
Confidence 555555553
No 361
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.74 E-value=0.24 Score=48.54 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.-++.++|.+|||||||.+.|+..+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 45799999999999999999997654
No 362
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.72 E-value=0.11 Score=57.74 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=32.2
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
-..|..+.+.|.||+|||.+|+++++.++ +....++.++.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg---~~~i~vsa~eL 184 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMG---IEPIVMSAGEL 184 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcC---CCeEEEEHHHh
Confidence 35788999999999999999999999855 45566666444
No 363
>PRK04328 hypothetical protein; Provisional
Probab=94.70 E-value=0.19 Score=52.62 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=28.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
++-++++.|-||+|||++|.++...--..|.++-.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4678999999999999999998765334466665554
No 364
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.65 E-value=0.044 Score=54.58 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=33.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
+.-++|.|-||+|||++|.+++..+-..|..+..++..+.-.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~ 88 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLD 88 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceec
Confidence 456999999999999999999999988999999888866544
No 365
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.63 E-value=0.25 Score=57.21 Aligned_cols=29 Identities=24% Similarity=0.167 Sum_probs=25.6
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.-+-+++|+|.||+||||+|+.|++.+.-
T Consensus 34 ~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 34 RLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34667999999999999999999999864
No 366
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.62 E-value=0.39 Score=54.00 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=61.4
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHh-hcCCCceEeehhhHH----HHhh----CCCCCCCCcCCCCHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYR----RLKH----GVNQSADFFRADNPEGMEARNEVA 419 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~-~~gi~tdv~~~gdyR----r~~~----g~~~~~~f~~~~~~~~~~~~~~vA 419 (699)
.+.-+|++.|-||+|||++|-.++..+. ..+.++-+|+...-. .+.. +..........-+...+..+....
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~~ 271 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAV 271 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 3566899999999999999999998875 347777777643221 1111 111110000011222222222222
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEEE
Q 005388 420 ALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLET 467 (699)
Q Consensus 420 ~~~l~dl~~~L~~~G~vVIlDAtn~~~e-~R~~l~el-~~~-~~~vifIE~ 467 (699)
. .+.+ ....|.|....+.. -|..++.+ .+. ++.+++|.-
T Consensus 272 ~--------~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDy 313 (421)
T TIGR03600 272 D--------RLSE-KDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDY 313 (421)
T ss_pred H--------HHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 1 2332 45677776666654 47777777 444 688888864
No 367
>PRK06620 hypothetical protein; Validated
Probab=94.59 E-value=0.34 Score=49.71 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=21.8
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
-.++++|.||+||||+++.++...+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 3589999999999999999887754
No 368
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.57 E-value=0.32 Score=53.30 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=33.5
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
.-++|.|-||+|||+||.+++..+...|..+..++..++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l 222 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADEL 222 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHH
Confidence 459999999999999999999999888888877766554
No 369
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.57 E-value=0.15 Score=58.51 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=35.3
Q ss_pred hhhcCCCCCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 341 ~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
|.+.+..=.+..++++.|-||+||||++.+++...-..|-++-.+...
T Consensus 253 D~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e 300 (484)
T TIGR02655 253 DEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE 300 (484)
T ss_pred HHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 334443334677999999999999999999998776667676665543
No 370
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.56 E-value=0.036 Score=53.50 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=31.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
+|.++|.+|+||||++..|+..+...+.+.-+++.|
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 378899999999999999999998888888777654
No 371
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.54 E-value=0.35 Score=56.24 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
-+-.++|+|-||+||||+|+.|++.|.-
T Consensus 37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 37 LHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567899999999999999999999864
No 372
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.52 E-value=0.67 Score=52.73 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=28.2
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcC--CCceEeehhhH
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLG--HDTKHFNVGKY 390 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~g--i~tdv~~~gdy 390 (699)
++++|-||+|||+|+++++.++.... .++..++..++
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f 171 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 89999999999999999999886543 34444555443
No 373
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.49 E-value=0.43 Score=54.96 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.|.-++|.|.||+|||++|++|+..++
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 344589999999999999999998864
No 374
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.47 E-value=0.029 Score=50.92 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.9
Q ss_pred EEEEccCCCChhHHHHHHHHHHhh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
|+|.|-||.|||++|+.|++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998763
No 375
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=0.18 Score=56.86 Aligned_cols=146 Identities=18% Similarity=0.268 Sum_probs=89.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
..++|+=..--|+||||+|+-|.+-++|-.+..|-+++ ..... + .++.+ ..-
T Consensus 373 e~tll~pia~igcgktt~ak~l~~lf~w~~vqnd~lsg------------------k~~~k---~---~~kai----~~~ 424 (758)
T COG5324 373 EFTLLVPIATIGCGKTTVAKILEKLFGWPVVQNDNLSG------------------KGGPK---R---FAKAI----IEE 424 (758)
T ss_pred eeEEEEEEEEeccCcccHHHHHHHHcCCcccccCCCCC------------------CCchh---H---HHHHH----HHH
Confidence 45577777788999999999999999997766555532 11111 1 11111 111
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH---HcCCceEEEEEEEe--CCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHH
Q 005388 430 MHEGGQVGIFDATNSSRKRRNMLMKM---AEGNCKIIFLETIC--NDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (699)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~el---~~~~~~vifIE~~c--~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~ 504 (699)
++++-.+|++|-.|..-..|..+.+- .-.+++++-+-..- .-++....|+-+|... .... -+++..+.-+.
T Consensus 425 ~r~~~~~v~~drnnh~~~~r~~lq~d~l~~~~~vr~v~~p~~~~~ev~e~~~~rvlqrg~~---hqsi-k~~eg~~kv~~ 500 (758)
T COG5324 425 FRNGHSVVFADRNNHISNMRSTLQTDILALIDGVRFVALPFKHTPEVPEFVQNRVLQRGDR---HQSI-KVSEGVDKVKA 500 (758)
T ss_pred hccCceEEEEcccchhhhhhhhhhcceEEEecCcEEEecccccCcccHHHHHHHHHhccCC---ccce-eeccchHHHHH
Confidence 33345577888888887788777653 34566666553311 2256677777655331 1112 34556666677
Q ss_pred HHHhhhhhccCCCCC-----CceEEeec
Q 005388 505 RLANYEKVYEPVDEG-----SYIKMIDM 527 (699)
Q Consensus 505 Ri~~y~~~yEpl~e~-----~yik~in~ 527 (699)
=+..+-++|.|++.+ .|--||..
T Consensus 501 imn~f~k~ykp~~~~~~~d~~~d~~iel 528 (758)
T COG5324 501 IMNTFYKQYKPFDAGNKHDANYDDIIEL 528 (758)
T ss_pred HHHHHHHhcCCCCCCCCccccccceeec
Confidence 778888999999865 56555544
No 376
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.45 E-value=0.4 Score=56.49 Aligned_cols=27 Identities=30% Similarity=0.268 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
-+-.++|+|-||+||||+|+.|++.|.
T Consensus 37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 37 VAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456789999999999999999999986
No 377
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.41 E-value=0.23 Score=51.76 Aligned_cols=136 Identities=17% Similarity=0.207 Sum_probs=69.0
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHH-HHHHHHHHHHHH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEA-RNEVAALAMEDM 426 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~-~~~vA~~~l~dl 426 (699)
+..|- +++.|.||.||||-...||+.|-- +.|......++.+. +-.-..++- +...|..-+.
T Consensus 46 gnmP~-liisGpPG~GKTTsi~~LAr~LLG----------~~~ke~vLELNASd----eRGIDvVRn~IK~FAQ~kv~-- 108 (333)
T KOG0991|consen 46 GNMPN-LIISGPPGTGKTTSILCLARELLG----------DSYKEAVLELNASD----ERGIDVVRNKIKMFAQKKVT-- 108 (333)
T ss_pred CCCCc-eEeeCCCCCchhhHHHHHHHHHhC----------hhhhhHhhhccCcc----ccccHHHHHHHHHHHHhhcc--
Confidence 34453 788999999999999999988642 22222222222221 111111211 1111211111
Q ss_pred HHHHhcC-CeEEEEeCC-CCCHHHHHHHH---HHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHH
Q 005388 427 ISWMHEG-GQVGIFDAT-NSSRKRRNMLM---KMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 501 (699)
Q Consensus 427 ~~~L~~~-G~vVIlDAt-n~~~e~R~~l~---el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d 501 (699)
|-.+ -.++|+|-- ..+..-.+.++ ++...... |. ..|+..+.|-+=|+.|-. ---|+.. +.+..++.
T Consensus 109 ---lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttR--Fa-laCN~s~KIiEPIQSRCA-iLRyskl-sd~qiL~R 180 (333)
T KOG0991|consen 109 ---LPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTR--FA-LACNQSEKIIEPIQSRCA-ILRYSKL-SDQQILKR 180 (333)
T ss_pred ---CCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccch--hh-hhhcchhhhhhhHHhhhH-hhhhccc-CHHHHHHH
Confidence 1111 358888854 34444333333 33333333 33 237777777777876643 3346655 56666666
Q ss_pred HHHHHHh
Q 005388 502 FKNRLAN 508 (699)
Q Consensus 502 ~~~Ri~~ 508 (699)
.++=.+.
T Consensus 181 l~~v~k~ 187 (333)
T KOG0991|consen 181 LLEVAKA 187 (333)
T ss_pred HHHHHHH
Confidence 5554443
No 378
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.40 E-value=0.077 Score=60.23 Aligned_cols=26 Identities=42% Similarity=0.565 Sum_probs=22.9
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.-|+++|.||+|||++|++|+..+..
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35788999999999999999998763
No 379
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.39 E-value=0.53 Score=56.82 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
-+++.|.||+||||+|+.|++.+.
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 368899999999999999998754
No 380
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.38 E-value=0.26 Score=52.48 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=21.8
Q ss_pred EEEEccCCCChhHHHHHHHHHHhh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
++++|.||+||||+++.+++.+..
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 699999999999999999998753
No 381
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.38 E-value=0.65 Score=55.76 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=25.5
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.-+-.++|+|.||.||||+|+.|++.|.-
T Consensus 38 rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 38 KISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 34668999999999999999999999863
No 382
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.37 E-value=0.32 Score=51.83 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.3
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
--++++|.||+|||++|+.++..++
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3478999999999999999999865
No 383
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.37 E-value=0.27 Score=51.85 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=28.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
...+++++|-||+|||++|.+++...-..|-++-.++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 5678999999999999999999876544465555554
No 384
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.35 E-value=0.03 Score=61.03 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=24.8
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCC
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLGH 380 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~gi 380 (699)
|++.|.||+||||+++.|++.|++..+
T Consensus 67 ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 67 VMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred EEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 899999999999999999999987654
No 385
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.34 E-value=0.037 Score=65.09 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=34.6
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
...+.+.+|||+||-||||||.-+|++ -|+++.-+|..|-|-
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq---aGYsVvEINASDeRt 364 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ---AGYSVVEINASDERT 364 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh---cCceEEEeccccccc
Confidence 345678999999999999999999998 667777777766554
No 386
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.33 E-value=0.46 Score=50.68 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=33.9
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyR 391 (699)
+-.|+++|.+|+||||+++.|+..+...+.++-+++.|.+|
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 45899999999999999999999887656667777776665
No 387
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.28 E-value=0.041 Score=53.38 Aligned_cols=31 Identities=23% Similarity=0.127 Sum_probs=21.7
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
...+.+++++|.||+|||++.+++.+++...
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3456789999999999999999999998765
No 388
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.27 E-value=1.1 Score=51.09 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=24.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
.|.-++|+|.||+|||++|++++..+...
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~ 244 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSAT 244 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 45568899999999999999999987643
No 389
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=94.22 E-value=0.13 Score=53.45 Aligned_cols=153 Identities=18% Similarity=0.228 Sum_probs=78.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCCCCCCcCCCCHHHHHHHHH---HHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARNE---VAALAMED 425 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~~~~~~~~~~---vA~~~l~d 425 (699)
++.-++++|-||+||.|.|..|++.+.... +..||. |..... .. .+ ..+....+.+ +-....-.
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~h-----l~tGdllr~~ia~--~t-el----g~~~~~~~~~g~lvpDeiv~~ 81 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIH-----ISTGDLLRDEIAS--GT-EL----GKEAKEAIDKGKLVPDEVVVR 81 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCcc-----chhHHHHHHHHhc--cC-cH----HHHHHHHHHhcCcCcHHHHHH
Confidence 467899999999999999999999866544 444544 332210 00 00 0111111110 00011111
Q ss_pred HHHHHhcC---CeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccC----------------
Q 005388 426 MISWMHEG---GQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQS---------------- 486 (699)
Q Consensus 426 l~~~L~~~---G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~s---------------- 486 (699)
+++...++ ....|+|..-.+...-+.+.+....-- .+|+..|+ .+.|.+||..|..+.
T Consensus 82 ~l~~~l~~~~~~~~~ildg~Prt~~qa~~l~~~~~~~d--~Vi~l~vp-~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~ 158 (235)
T KOG3078|consen 82 LLEKRLENPRCQKGFILDGFPRTVQQAEELLDRIAQID--LVINLKVP-EEVLVDRITGRRIHPASGRVYHLEFNPPKVP 158 (235)
T ss_pred HHHhhccccccccccccCCCCcchHHHHHHHHccCCcc--eEEEecCC-HHHHHHHHhcccccCcccceecccccCCccc
Confidence 22222222 367888888777654444333311111 35555566 788889887773211
Q ss_pred --CCCCCC---CChHHHHHHHHHHHHhhhhhccCCC
Q 005388 487 --PDYAEE---PDFEAGLQDFKNRLANYEKVYEPVD 517 (699)
Q Consensus 487 --pD~s~~---~d~e~al~d~~~Ri~~y~~~yEpl~ 517 (699)
+|..+. -..++..+-.+.|+..|.++-.|+-
T Consensus 159 ~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~~pv~ 194 (235)
T KOG3078|consen 159 GKDDITGEPLIQREDDKPEVVKKRLKAYKEQTKPVL 194 (235)
T ss_pred cccccccChhhcCccccHHHHHHHHHHHhhcchHHH
Confidence 111100 0223444556788888887666654
No 390
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.18 E-value=0.4 Score=52.39 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=29.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
+..++.+.|.|||||||||-.++......+..+-.++.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 56789999999999999999988777655655555543
No 391
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.17 E-value=1.4 Score=45.85 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.3
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+-+++++|.+|+||||+++.+...+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44789999999999999999998876
No 392
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=94.15 E-value=0.033 Score=57.57 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.7
Q ss_pred EEEEEEccCCCChhHHHHHHHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
++|.++|+|||||||+|+.+.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~ 23 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN 23 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc
Confidence 47999999999999999999764
No 393
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.14 E-value=0.11 Score=55.80 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=38.0
Q ss_pred hcCCCCCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 343 MLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 343 ~~~~~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
...+.+++|+++-+.|-||+||+++|+.|++.+...|.++..+
T Consensus 102 ~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V 144 (344)
T KOG2170|consen 102 WANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFV 144 (344)
T ss_pred hcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhH
Confidence 3345578999999999999999999999999999999888776
No 394
>PF13245 AAA_19: Part of AAA domain
Probab=94.10 E-value=0.054 Score=46.58 Aligned_cols=25 Identities=36% Similarity=0.301 Sum_probs=18.8
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
-++++.|.||||||+++..+..++-
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688899999999966655555554
No 395
>PRK05636 replicative DNA helicase; Provisional
Probab=94.06 E-value=0.35 Score=55.93 Aligned_cols=142 Identities=13% Similarity=0.121 Sum_probs=77.8
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhh-cCCCceEeehhh----HHHHhhCCCCCCC---C-cCCCCHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGK----YRRLKHGVNQSAD---F-FRADNPEGMEARNEVA 419 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~-~gi~tdv~~~gd----yRr~~~g~~~~~~---f-~~~~~~~~~~~~~~vA 419 (699)
.+.-+|++.|-||.|||++|..++..... .+..+-+|+... +..+.......-. + ...-+++.+..+.+.+
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~a~ 342 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRL 342 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 35678999999999999999999987653 355665665432 2111111111000 1 0111233333332222
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHH
Q 005388 420 ALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEA 497 (699)
Q Consensus 420 ~~~l~dl~~~L~~~G~vVIlDAtn~~~-e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~ 497 (699)
. .+. +....|.|..+.+. +-|..++.+ .+.++++++|.- -.++ . . ... .. +...
T Consensus 343 ~--------~l~-~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDY----Lql~----~---~-~~~--~~-~r~~ 398 (505)
T PRK05636 343 G--------KIA-QAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDY----LQLM----S---S-GKR--VE-SRQQ 398 (505)
T ss_pred H--------HHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcc----hHhc----C---C-CCC--CC-cHHH
Confidence 2 232 35678888888775 457778877 667888877753 2222 1 0 111 12 3344
Q ss_pred HHHHHHHHHHhhhhhcc
Q 005388 498 GLQDFKNRLANYEKVYE 514 (699)
Q Consensus 498 al~d~~~Ri~~y~~~yE 514 (699)
.+....+++....+.+.
T Consensus 399 ei~~isr~LK~lAkel~ 415 (505)
T PRK05636 399 EVSEFSRQLKLLAKELD 415 (505)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 55667777777666553
No 396
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.04 E-value=0.38 Score=51.69 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=27.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcC--CCceEeehhhH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLG--HDTKHFNVGKY 390 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~g--i~tdv~~~gdy 390 (699)
.++++|.||+||||+|+.+++.+...+ .+...++..++
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 377999999999999999999986432 22334554333
No 397
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.98 E-value=0.73 Score=51.53 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=29.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhc--CCCceEeehhhH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 390 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~--gi~tdv~~~gdy 390 (699)
.+++.|-||+|||+|+++++..+... +..+..++..++
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~ 177 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF 177 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH
Confidence 47889999999999999999998654 455555665444
No 398
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=93.97 E-value=0.071 Score=50.47 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.7
Q ss_pred EEEEccCCCChhHHHHHHHHH
Q 005388 354 IVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~ 374 (699)
|+++|.||+|||++..++...
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 789999999999999998754
No 399
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.93 E-value=0.54 Score=53.02 Aligned_cols=109 Identities=16% Similarity=0.115 Sum_probs=59.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh-cCCCceEeehhhHHHH----hhC--CCCCC-CCc-CCCCHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRRL----KHG--VNQSA-DFF-RADNPEGMEARNEVAA 420 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~-~gi~tdv~~~gdyRr~----~~g--~~~~~-~f~-~~~~~~~~~~~~~vA~ 420 (699)
+.-++++.|-||+|||+++..++..+.. .+..+-.|+...-... ... ...+. .+. ..-....+..+...
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a-- 271 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSA-- 271 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHH--
Confidence 5679999999999999999999987654 4666666655322211 111 01110 000 00122222221111
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEEE
Q 005388 421 LAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLET 467 (699)
Q Consensus 421 ~~l~dl~~~L~~~G~vVIlDAtn~~~e-~R~~l~el-~~~~~~vifIE~ 467 (699)
...+.+ ....|.|....+.. -+..++.+ .+.++++++|.-
T Consensus 272 ------~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~ 313 (434)
T TIGR00665 272 ------AGKLSE-APLYIDDTPGLTITELRAKARRLKREHGLGLIVIDY 313 (434)
T ss_pred ------HHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 122332 34566665555544 56777777 667888888864
No 400
>COG4240 Predicted kinase [General function prediction only]
Probab=93.90 E-value=0.081 Score=54.81 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=37.4
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcC-CCceEeehhhH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNVGKY 390 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~g-i~tdv~~~gdy 390 (699)
.+|+++-++|.-||||||+|-.|...|...+ .++-.++.||+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDl 90 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDL 90 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhh
Confidence 4699999999999999999999999999888 47777888766
No 401
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.87 E-value=0.93 Score=50.78 Aligned_cols=43 Identities=30% Similarity=0.275 Sum_probs=33.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh--hcCCCceEeehhhHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYRR 392 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~--~~gi~tdv~~~gdyRr 392 (699)
++.+|.|+|..|.||||.-.+||.++. ....++-++..|.||=
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI 246 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI 246 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh
Confidence 377999999999999877777776665 4456677888888854
No 402
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=93.86 E-value=0.035 Score=67.67 Aligned_cols=32 Identities=25% Similarity=0.193 Sum_probs=27.4
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCc
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDT 382 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~t 382 (699)
+++|.+.|.|||||||+|+.|+++|++..+++
T Consensus 34 ~~~i~idG~~gsGKst~~~~la~~l~~~~~~~ 65 (863)
T PRK12269 34 TVIIALDGPAGSGKSSVCRLLASRLGAQCLNT 65 (863)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 36899999999999999999999998754433
No 403
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.86 E-value=0.51 Score=56.91 Aligned_cols=42 Identities=29% Similarity=0.310 Sum_probs=33.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh-hcC-CCceEeehhhHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLG-HDTKHFNVGKYR 391 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~-~~g-i~tdv~~~gdyR 391 (699)
.+.+|.|+|..|+||||+..+|+.++. ..| .++-++..|.||
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 357999999999999999999998774 444 355667777776
No 404
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.85 E-value=0.49 Score=51.77 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=29.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
+..++.+.|.|||||||||-.++......+-.+-.++.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 46689999999999999999998776655555555543
No 405
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=93.85 E-value=0.19 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCChhHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
++-|+++|.||+||||+..+|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 566999999999999999999754
No 406
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.84 E-value=0.069 Score=52.80 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=22.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcC
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLG 379 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~g 379 (699)
|+++|-||+||||+.+++.+.|...+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~ 27 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKG 27 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTC
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccC
Confidence 78999999999999999999995433
No 407
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.076 Score=62.53 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=29.0
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCC
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~ 381 (699)
..+..+++|+|.||.|||.+|+.||+.|+...++
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR 468 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFR 468 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEE
Confidence 3567799999999999999999999998865433
No 408
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.82 E-value=0.79 Score=54.35 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=26.0
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
.-+-.++|+|.||+||||+|+.|++.|...
T Consensus 36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345579999999999999999999998753
No 409
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=93.81 E-value=0.29 Score=53.18 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=70.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe---ehhhHHH------HhhCCCCC-CCCcCCCCHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF---NVGKYRR------LKHGVNQS-ADFFRADNPEGMEARNEVA 419 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~---~~gdyRr------~~~g~~~~-~~f~~~~~~~~~~~~~~vA 419 (699)
+-.||++.|--|+|||-||..||.+++...+++|-+ .+.++-- ...|.... .+....+-+.+.......|
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a 85 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA 85 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence 457999999999999999999999977655554422 1111100 00111111 1233333343445555566
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH-----H---H--------cCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 420 ALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMK-----M---A--------EGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 420 ~~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~e-----l---~--------~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
..+.+++ ++++...+|+-++|..-.. .+.+ . . +..|...||.+.+ ++.++.+++..|.
T Consensus 86 ~~aie~I---~~rgk~PIv~GGs~~yi~a--l~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda-~~~VL~~~l~~RV 159 (348)
T KOG1384|consen 86 SRAIEEI---HSRGKLPIVVGGSNSYLQA--LLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDA-DQAVLFERLDKRV 159 (348)
T ss_pred HHHHHHH---HhCCCCCEEeCCchhhHHH--HhhcCCCcccCcccccCCCCCcccccceEEEEEec-chHHHHHHHHHHH
Confidence 5555432 3444567777777765321 1111 0 0 1124444555544 4888999998775
Q ss_pred c
Q 005388 484 Q 484 (699)
Q Consensus 484 ~ 484 (699)
-
T Consensus 160 D 160 (348)
T KOG1384|consen 160 D 160 (348)
T ss_pred H
Confidence 3
No 410
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.79 E-value=0.46 Score=56.34 Aligned_cols=25 Identities=32% Similarity=0.382 Sum_probs=23.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.++|+|-||+||||+|+.|++.|.-
T Consensus 40 a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred eEEEECCCCCChHHHHHHHHHHhcC
Confidence 5899999999999999999999864
No 411
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.78 E-value=0.044 Score=61.61 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=28.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCce
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~td 383 (699)
.|.-|+|+|.||+|||++|++|++.++...++.+
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd 79 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence 3456999999999999999999999876554444
No 412
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.75 E-value=0.3 Score=52.02 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=24.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.|..+++.|.||+||||+|..|++.|.
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 455899999999999999999999987
No 413
>PRK08760 replicative DNA helicase; Provisional
Probab=93.75 E-value=0.51 Score=54.27 Aligned_cols=110 Identities=18% Similarity=0.148 Sum_probs=61.9
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhh-cCCCceEeehhhHHH----HhhCCCCCC---CCcC-CCCHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRR----LKHGVNQSA---DFFR-ADNPEGMEARNEVA 419 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~-~gi~tdv~~~gdyRr----~~~g~~~~~---~f~~-~~~~~~~~~~~~vA 419 (699)
.+.-+|++.|-||.|||++|-.++..... .+..+-+|+...-.. +.......- .+.. .-....+..+...+
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~ 306 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAI 306 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHH
Confidence 35679999999999999999999987653 366676776543221 111111000 0100 11222222222211
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEEE
Q 005388 420 ALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLET 467 (699)
Q Consensus 420 ~~~l~dl~~~L~~~G~vVIlDAtn~~~e-~R~~l~el-~~~~~~vifIE~ 467 (699)
..|.+ -...|.|....+.+ -|..++.+ .+.++.+++|.-
T Consensus 307 --------~~l~~-~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDy 347 (476)
T PRK08760 307 --------KMLKE-TKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDY 347 (476)
T ss_pred --------HHHhc-CCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 22332 45667777677655 47777777 566778777764
No 414
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=0.61 Score=52.10 Aligned_cols=127 Identities=23% Similarity=0.344 Sum_probs=74.1
Q ss_pred ccCCCccccccccccccccccccCCccccccc-ccceecccCCCCceecccccccc-----ccccccccccCCCC---CC
Q 005388 259 SVPDPSKVYSSSGMVESKSVGTFSPLQKQDSH-RGLFVDRGVGSPRLVKSASASTF-----NIDLKLDTETKNSM---PA 329 (699)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~r~ss~~~~-----~~~~~~~~~~~~~~---p~ 329 (699)
.+.|-.|+.-..|-+.--.+|.++. +.... -+-|+++--|-|.|.|-||-+.| ...+.-.......+ +.
T Consensus 274 ~ltD~~Kli~tVgGlTaLAaGvYTt--keg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~~~~~s~~gk 351 (630)
T KOG0742|consen 274 FLTDWNKLIATVGGLTALAAGVYTT--KEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQGSRSASSRGK 351 (630)
T ss_pred HhhhhHhHHHHhhhHHHHHhhheec--cccchhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhhhHhhhhcCC
Confidence 3456666666666666777777766 22222 25688888999999999885222 11111110110000 00
Q ss_pred --ccchhhHH-------HHHhhhcCC-CCCccE-EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 330 --AAGAVAAA-------AVADQMLGP-KEHRHL-AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 330 --~~~~~~~~-------~l~~~~~~~-~~~~~~-lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
-.+-+-.+ .|+..+.-+ .++.|+ -|+|.|.||+|||-+|+.|+++ -|.+--++.+||+
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~---SGlDYA~mTGGDV 420 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARH---SGLDYAIMTGGDV 420 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhh---cCCceehhcCCCc
Confidence 01111122 333333333 345555 5899999999999999999988 6667667766665
No 415
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.68 E-value=0.5 Score=52.65 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=30.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
..-++++.|-||+||||++.+++..+...+.++-.++.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~ 118 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG 118 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 45689999999999999999999887766555555543
No 416
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=93.65 E-value=0.2 Score=51.70 Aligned_cols=124 Identities=14% Similarity=0.108 Sum_probs=59.0
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCC--C-------CCcCCC-CHHHHHHHHHHHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--A-------DFFRAD-NPEGMEARNEVAAL 421 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~--~-------~f~~~~-~~~~~~~~~~vA~~ 421 (699)
.|++++|.+|+|||.+|-.|++.+++-.+..|-+ --|+....+...+ . .|..+- -.++.-. .+-|..
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dri--q~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~-a~ea~~ 78 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRI--QCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIIN-AEEAHE 78 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SG--GG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecce--ecccccccccCCCCHHHHcccceeeeccccccCCCcC-HHHHHH
Confidence 3789999999999999999999988765444433 1233333222111 0 111110 0011100 111222
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-----HcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 422 ~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el-----~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
.|-+.+..+.. +..+|+.+... ..+.++ -..++.+...-...+|++.-..++.+|.+
T Consensus 79 ~Li~~v~~~~~-~~~~IlEGGSI-----SLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~ 140 (233)
T PF01745_consen 79 RLISEVNSYSA-HGGLILEGGSI-----SLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVR 140 (233)
T ss_dssp HHHHHHHTTTT-SSEEEEEE--H-----HHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHH
T ss_pred HHHHHHHhccc-cCceEEeCchH-----HHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHH
Confidence 23333333444 66788876553 333443 23677777777778888887777766654
No 417
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.64 E-value=0.92 Score=51.82 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=24.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
-+-.++|+|.||+||||+|+.+++.+.-
T Consensus 38 i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 38 AAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4567999999999999999999999853
No 418
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.64 E-value=1.2 Score=48.92 Aligned_cols=145 Identities=17% Similarity=0.184 Sum_probs=73.0
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceE--eehhhHHHHhhCCCCCCCCcCCC---CHHHHHHHHHHHHHH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH--FNVGKYRRLKHGVNQSADFFRAD---NPEGMEARNEVAALA 422 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv--~~~gdyRr~~~g~~~~~~f~~~~---~~~~~~~~~~vA~~~ 422 (699)
+.-+-.++++|.+|.||+++|+.+++.|.-....... =.-..-|+...|..++..+..++ ....++...++...
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~- 97 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSF- 97 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHH-
Confidence 4456789999999999999999999998632111000 00011133333333332222221 11112222222211
Q ss_pred HHHHHHH-HhcCCeEEEEeCC-CCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHH
Q 005388 423 MEDMISW-MHEGGQVGIFDAT-NSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGL 499 (699)
Q Consensus 423 l~dl~~~-L~~~G~vVIlDAt-n~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al 499 (699)
+... ......++|+|.. ..+.+--+.+.+. .+..-.++|| ..+++++.+-.-|+-|... -.+... +.+++.
T Consensus 98 ---~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fi-L~t~~~~~ll~TI~SRc~~-~~~~~~-~~~~~~ 171 (328)
T PRK05707 98 ---VVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLL-LISHQPSRLLPTIKSRCQQ-QACPLP-SNEESL 171 (328)
T ss_pred ---HhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEE-EEECChhhCcHHHHhhcee-eeCCCc-CHHHHH
Confidence 1110 1123567778655 4466666666655 4444456666 5577777777777666542 233333 455553
No 419
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.59 E-value=0.64 Score=53.00 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=30.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
..-++++.|-||+||||++.+++..+...+.++-.++.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~ 116 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG 116 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 45689999999999999999999887655656555543
No 420
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=93.58 E-value=0.62 Score=48.90 Aligned_cols=109 Identities=15% Similarity=0.241 Sum_probs=62.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhC---CC-CCCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG---VN-QSADFFRADNPEGMEARNEVAALAMEDM 426 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g---~~-~~~~f~~~~~~~~~~~~~~vA~~~l~dl 426 (699)
++++++.|--|+||||+|..|+.++...+.++-+++.|--.....+ .. ....+.+. .+ +-....+++
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~~~l~~~~~~i~~~-~~--------i~~r~fD~L 73 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGYKALNVRRLNIMDG-DE--------INTRNFDAL 73 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhHHhcCCcceecccC-Cc--------cchhhHHHH
Confidence 5677778999999999999999999888888888877522111111 01 11111111 11 111123444
Q ss_pred HHHHhcCCeEEEEeCCCCCHHH-HH-----HHHHH-HcCCceEEEEEEE
Q 005388 427 ISWMHEGGQVGIFDATNSSRKR-RN-----MLMKM-AEGNCKIIFLETI 468 (699)
Q Consensus 427 ~~~L~~~G~vVIlDAtn~~~e~-R~-----~l~el-~~~~~~vifIE~~ 468 (699)
+..+...+..+|+|.....-.- .+ .+.++ .+.+..+++..++
T Consensus 74 ve~i~~~~~dvIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi 122 (241)
T PRK13886 74 VEMIASTEGDVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVV 122 (241)
T ss_pred HHHHhccCCCEEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEE
Confidence 5555445666888877654332 22 23344 6678877766553
No 421
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.56 E-value=0.51 Score=47.88 Aligned_cols=27 Identities=19% Similarity=0.070 Sum_probs=23.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
...++.++|.||+|||+++..++....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 466899999999999999999987643
No 422
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=93.55 E-value=0.06 Score=60.44 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=28.1
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
-=|++.|-||+||||+|++||+++...|.=++.+
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy~~~GkiVKTm 297 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFYASQGKIVKTM 297 (604)
T ss_pred cceEEecCCCCChhHHHHHHHHHHHhcCcEEeec
Confidence 3489999999999999999999998877544333
No 423
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.52 E-value=1.5 Score=48.52 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=25.1
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
..+-.++++|.||+|||++++.+.+.+...
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 344567899999999999999999988644
No 424
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.48 E-value=0.76 Score=54.25 Aligned_cols=37 Identities=22% Similarity=0.394 Sum_probs=29.4
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhc--CCCceEeehhhH
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 390 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~--gi~tdv~~~gdy 390 (699)
++|+|-+|+|||+|+++++.++... +.++..++..++
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef 355 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF 355 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 7999999999999999999998643 556666655443
No 425
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.13 Score=59.01 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.6
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
.-|.=|+++|.||+|||-|||++|-.
T Consensus 335 KLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 335 KLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cCCCceEEeCCCCCchhHHHHHhhcc
Confidence 34566999999999999999999965
No 426
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=93.42 E-value=0.2 Score=55.78 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=37.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh-------hcCCCceEeehhhHHHHhhC
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-------WLGHDTKHFNVGKYRRLKHG 396 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~-------~~gi~tdv~~~gdyRr~~~g 396 (699)
++-++.++|-.||||||+++.|.--.. |.|-.++--+.++||+....
T Consensus 348 rGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSa 401 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSA 401 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHH
Confidence 566899999999999999999985432 55666777778999996643
No 427
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.42 E-value=0.5 Score=51.91 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=23.3
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
+.+|++.|-||||||.||-.|++.|
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHh
Confidence 3589999999999999999999998
No 428
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.41 E-value=0.092 Score=56.03 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=28.6
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
+|.++|.+|||||||+..|.+.|...| ++-++
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~I 34 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG-RVGTV 34 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEE
Confidence 699999999999999999999999888 65555
No 429
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=93.39 E-value=0.099 Score=51.76 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=25.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
+++++|+.||||||+-+.|.+ ....+.+.-++
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI 33 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVI 33 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEE
Confidence 689999999999999999997 44456666555
No 430
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=93.38 E-value=0.095 Score=48.49 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.5
Q ss_pred EEEEccCCCChhHHHHHHHHH
Q 005388 354 IVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~ 374 (699)
|+++|.||+||||+..+|...
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988643
No 431
>PRK06321 replicative DNA helicase; Provisional
Probab=93.38 E-value=0.83 Score=52.48 Aligned_cols=110 Identities=14% Similarity=0.074 Sum_probs=61.5
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhh-cCCCceEeehhhHHH----HhhCCCCC---CCC-cCCCCHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRR----LKHGVNQS---ADF-FRADNPEGMEARNEVA 419 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~-~gi~tdv~~~gdyRr----~~~g~~~~---~~f-~~~~~~~~~~~~~~vA 419 (699)
.+.-+|++.|-||.|||++|-.|+..... .+.++-+|+...=.. +....... ..+ ...-....+..+...+
T Consensus 224 ~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~ 303 (472)
T PRK06321 224 SPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIVSVV 303 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHHHHHHHHH
Confidence 35579999999999999999999987642 366666666532221 11111000 011 1111222233222222
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEEE
Q 005388 420 ALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLET 467 (699)
Q Consensus 420 ~~~l~dl~~~L~~~G~vVIlDAtn~~~-e~R~~l~el-~~~~~~vifIE~ 467 (699)
.. |.+ ....|-|..+.+. +-|..++.+ .+.++++++|.-
T Consensus 304 ~~--------l~~-~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDy 344 (472)
T PRK06321 304 NE--------MQE-HTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDY 344 (472)
T ss_pred HH--------HHc-CCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 22 332 4456656666554 457888877 667788887754
No 432
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.35 E-value=0.29 Score=49.94 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=27.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc-CCCceEee
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFN 386 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~-gi~tdv~~ 386 (699)
++-++++.|-||+|||++|.+++..--.. |-++-.++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 45689999999999999999877554334 66665554
No 433
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.35 E-value=0.19 Score=57.37 Aligned_cols=39 Identities=15% Similarity=0.002 Sum_probs=30.7
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
.+.-++++.|-||+||||++.+++..+...+.++-.++.
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~ 130 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSG 130 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 356789999999999999999999887665555545544
No 434
>PRK08006 replicative DNA helicase; Provisional
Probab=93.31 E-value=0.86 Score=52.34 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=62.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh-hcCCCceEeehhhHHH----HhhCCCC--C-CCCc-CCCCHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRR----LKHGVNQ--S-ADFF-RADNPEGMEARNEVAA 420 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~-~~gi~tdv~~~gdyRr----~~~g~~~--~-~~f~-~~~~~~~~~~~~~vA~ 420 (699)
+.-+|++.|-||.|||++|-.|+.... ..+.++-+|+..-=.. +...... + ..+. ..-+++.+..+...+.
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~~ 302 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMG 302 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHH
Confidence 567899999999999999999998765 3466666666532211 1111101 0 0111 1123333333333332
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEEE
Q 005388 421 LAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLET 467 (699)
Q Consensus 421 ~~l~dl~~~L~~~G~vVIlDAtn~~~e-~R~~l~el-~~~-~~~vifIE~ 467 (699)
. +.......|.|....+.. -|..++.+ .++ ++.+++|.-
T Consensus 303 ~--------~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDY 344 (471)
T PRK08006 303 I--------LLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDY 344 (471)
T ss_pred H--------HHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 2 212355778787777765 57777776 444 577777753
No 435
>PRK05595 replicative DNA helicase; Provisional
Probab=93.28 E-value=0.78 Score=52.13 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=61.9
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhh-cCCCceEeehhhHHH----HhhCCC--CC-CCCcC-CCCHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRR----LKHGVN--QS-ADFFR-ADNPEGMEARNEVA 419 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~-~gi~tdv~~~gdyRr----~~~g~~--~~-~~f~~-~~~~~~~~~~~~vA 419 (699)
.+.-+|++.|-||.|||++|-.++..+.. .|.++-+|+...=.+ +..... .+ ..+.. .-....+..+.+.+
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~~~~~~~~ 278 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARAS 278 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 35668999999999999999999987653 466776776532211 111100 01 00100 11222222222222
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEEE
Q 005388 420 ALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLET 467 (699)
Q Consensus 420 ~~~l~dl~~~L~~~G~vVIlDAtn~~~e-~R~~l~el-~~~~~~vifIE~ 467 (699)
. .+.+ ....|.|....+.. -|..++.+ .+.++.+++|.-
T Consensus 279 ~--------~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDy 319 (444)
T PRK05595 279 G--------PLAA-AKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDY 319 (444)
T ss_pred H--------HHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeH
Confidence 1 2322 45677777777654 57777777 567788777754
No 436
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.24 E-value=1.2 Score=52.20 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=24.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
-+-.++|+|.+|+||||+|+.|++.+.
T Consensus 37 ~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 37 ISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 466899999999999999999999976
No 437
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=93.24 E-value=0.39 Score=43.48 Aligned_cols=61 Identities=11% Similarity=0.185 Sum_probs=47.6
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecC-----CCCCceeeEEEEecCC
Q 005388 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVP-----PNHETLDFKFLLKPKY 99 (699)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~-----~~~~~leyKf~~~~~~ 99 (699)
-++|++-||. -..+.|+|+-. +|++.. .+|.+...+.|++.+... .++.--.|||.|...+
T Consensus 6 g~~FrvwAP~---A~~V~l~GdFn---~W~~~~-~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~ 71 (99)
T cd02854 6 GVTYREWAPN---AEEVYLIGDFN---NWDRNA-HPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPS 71 (99)
T ss_pred eEEEEEECCC---CCEEEEEccCC---CCCCcC-cccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCC
Confidence 3789999995 45788888765 898744 679998999999998863 3455678999998743
No 438
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.21 E-value=1.3 Score=53.59 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=23.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.|.-|+|.|.||+|||++|++|+..++.
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~ 513 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGA 513 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3455889999999999999999988653
No 439
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=93.20 E-value=0.17 Score=49.89 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=20.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
+..-|+++|++|+||||+..+|..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~ 39 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKN 39 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999988874
No 440
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=93.19 E-value=0.091 Score=53.68 Aligned_cols=36 Identities=25% Similarity=0.170 Sum_probs=33.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
+++++|-+|+||||++..|+.++...|.++-+++.|
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d 36 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTD 36 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 478999999999999999999999999999998875
No 441
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=93.18 E-value=0.37 Score=45.70 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.8
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~ 374 (699)
+|+++|.+|+||||+..+|...
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~ 23 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKT 23 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhc
Confidence 4899999999999999999754
No 442
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=93.14 E-value=1.1 Score=47.52 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.|.++|.+|+|||||+.+|....+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g 27 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGG 27 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999986544
No 443
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.14 E-value=0.11 Score=51.29 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=31.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
..++-++|..+||||||..+|.+.|...|+++-++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~i 36 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATV 36 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEE
Confidence 35889999999999999999999999999887776
No 444
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.13 E-value=0.48 Score=48.73 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=28.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
++-++++.|-||+|||++|.+++...-..+.++-.++.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 56789999999999999999997554334555555543
No 445
>PRK08506 replicative DNA helicase; Provisional
Probab=93.11 E-value=0.75 Score=52.83 Aligned_cols=110 Identities=10% Similarity=0.098 Sum_probs=61.1
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH-----Hhh---CCCCCCCCcCCCCHHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR-----LKH---GVNQSADFFRADNPEGMEARNEVAA 420 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr-----~~~---g~~~~~~f~~~~~~~~~~~~~~vA~ 420 (699)
.+.-+|++.|-||.|||++|..++...-..+.++-+|+...=.. ... +.....-....-+...+..+.+.+.
T Consensus 190 ~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~ 269 (472)
T PRK08506 190 NKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACD 269 (472)
T ss_pred CCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 35569999999999999999999988655566666666532211 111 1111000000112222222222222
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-Hc-CCceEEEEEE
Q 005388 421 LAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AE-GNCKIIFLET 467 (699)
Q Consensus 421 ~~l~dl~~~L~~~G~vVIlDAtn~~~e-~R~~l~el-~~-~~~~vifIE~ 467 (699)
.+.+ ....|.|..+.+.. -|..++.+ .+ .++.+++|.-
T Consensus 270 --------~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDy 310 (472)
T PRK08506 270 --------ELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDY 310 (472)
T ss_pred --------HHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcC
Confidence 2332 45777777676655 47777777 33 3577777754
No 446
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.10 E-value=0.097 Score=60.04 Aligned_cols=42 Identities=31% Similarity=0.343 Sum_probs=32.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh-cC-CCceEeehhhHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LG-HDTKHFNVGKYR 391 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~-~g-i~tdv~~~gdyR 391 (699)
++.+|.|+|..|+||||++.+|+.++.. .| .++-++..|.||
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 4579999999999999999999988753 33 356667666663
No 447
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=93.10 E-value=0.14 Score=48.44 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=18.6
Q ss_pred EEEEccCCCChhHHHHHHHHH
Q 005388 354 IVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~ 374 (699)
|+++|.+|+|||++..++...
T Consensus 2 i~iiG~~~~GKssli~~~~~~ 22 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLG 22 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 689999999999999988744
No 448
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=93.05 E-value=1 Score=44.06 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
++.-|+|+|.+|+||||+..+|...
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4556899999999999999998754
No 449
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.03 E-value=0.12 Score=54.48 Aligned_cols=41 Identities=27% Similarity=0.280 Sum_probs=35.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
++.=+++.|-||+|||+||.+|+..+-..|+++..+..-+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el 144 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDL 144 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 45569999999999999999999999977999998877544
No 450
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=92.97 E-value=0.079 Score=61.69 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=27.3
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
..++.+++|+|.||+||||||+.|++.|...
T Consensus 100 ~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 100 EEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 3456699999999999999999999998865
No 451
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.97 E-value=0.63 Score=50.28 Aligned_cols=120 Identities=13% Similarity=0.063 Sum_probs=61.0
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCC-CCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-DFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~-~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
+..|+++|.+||||||++++|...+........++...|.++.... .... .+....... -+.++.+.+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~-~~~~v~~~~~~~~~---~~~~~l~~a------- 200 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCA-APNVVQLRTSDDAI---SMTRLLKAT------- 200 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCC-CCCEEEEEecCCCC---CHHHHHHHH-------
Confidence 3468899999999999999999887643112233333455443221 1111 111111110 122233332
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
|+..-..+|+.=.-.. +.-+.+. ....|..-.+--+++++....-.|+..-.
T Consensus 201 LR~~pD~iivGEiR~~-ea~~~l~-a~~tGh~G~~tTiHa~~~~~ai~Rl~~l~ 252 (299)
T TIGR02782 201 LRLRPDRIIVGEVRGG-EALDLLK-AWNTGHPGGIATIHANNAKAALDRLEQLI 252 (299)
T ss_pred hcCCCCEEEEeccCCH-HHHHHHH-HHHcCCCCeEEeeccCCHHHHHHHHHHHH
Confidence 3334556666555443 3333332 23334332345567778777777876543
No 452
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=92.96 E-value=0.15 Score=60.28 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=31.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
+.-+++|+|.||.|||.|++.+|+.|+...++ ++.|-.|.
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR---~sLGGvrD 388 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAKALGRKFVR---ISLGGVRD 388 (782)
T ss_pred CCcEEEEECCCCCCchhHHHHHHHHhCCCEEE---EecCcccc
Confidence 44589999999999999999999998765543 55555554
No 453
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.95 E-value=0.076 Score=55.97 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
-|++.|.||+|||++|+.|++.++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 366899999999999999998764
No 454
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.94 E-value=0.11 Score=52.63 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=25.1
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+++.+|.++|.+||||||+-.+|.+.+.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3678999999999999999999998865
No 455
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=92.92 E-value=0.34 Score=56.46 Aligned_cols=109 Identities=24% Similarity=0.264 Sum_probs=61.4
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhc-------CCCceEeehhhHHHHhhCCCCCCCCcC-----------CC-CHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL-------GHDTKHFNVGKYRRLKHGVNQSADFFR-----------AD-NPEG 411 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~-------gi~tdv~~~gdyRr~~~g~~~~~~f~~-----------~~-~~~~ 411 (699)
+..+.++|.+||||||+++.|.+.+... |.+..-++.+.+|+...-..++.-.|. ++ .+
T Consensus 355 Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~-- 432 (567)
T COG1132 355 GEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATD-- 432 (567)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCH--
Confidence 3457899999999999999999987631 444455666677775443333322222 21 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--CCeEEEEe--CCCCCHHHHHHHHHH---HcCCceEEEE
Q 005388 412 MEARNEVAALAMEDMISWMHE--GGQVGIFD--ATNSSRKRRNMLMKM---AEGNCKIIFL 465 (699)
Q Consensus 412 ~~~~~~vA~~~l~dl~~~L~~--~G~vVIlD--Atn~~~e~R~~l~el---~~~~~~vifI 465 (699)
+.+.+.++.+ .+.+|+.+ +|...++. +.+..-.+|+++.-. .+ +.+++.+
T Consensus 433 -eei~~a~k~a--~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~-~~~ILIL 489 (567)
T COG1132 433 -EEIEEALKLA--NAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR-NPPILIL 489 (567)
T ss_pred -HHHHHHHHHh--ChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc-CCCEEEE
Confidence 2233333332 22334332 36655555 567777776665433 33 3355555
No 456
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=92.91 E-value=0.2 Score=56.43 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=22.8
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
--|+|+|.||+|||++|+.|++.++
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcC
Confidence 4699999999999999999998865
No 457
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.90 E-value=0.2 Score=58.00 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=24.4
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
|.=|+|.|.||+|||++|++++..|...
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 4458999999999999999999998643
No 458
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.90 E-value=0.32 Score=54.59 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=23.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.|.-|++.|.||+|||++|++++..++
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 456688999999999999999998754
No 459
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.89 E-value=0.048 Score=51.83 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=18.5
Q ss_pred EEEEccCCCChhHHHHHHHHHHhh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
|++-|.||.||||+|++|++.++.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 688999999999999999999764
No 460
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=92.88 E-value=0.082 Score=49.83 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=18.4
Q ss_pred EEEEccCCCChhHHHHHHHH
Q 005388 354 IVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~ 373 (699)
|+++|.||+||||+.++|..
T Consensus 3 i~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999874
No 461
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=92.88 E-value=0.19 Score=52.34 Aligned_cols=112 Identities=21% Similarity=0.242 Sum_probs=62.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
.|+||+|-|+.||||..+.+.|.+.|.-.++++..|..-.-.... ..| +.....-
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE~~------~p~-------------------lwRfw~~ 84 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEELR------RPF-------------------LWRFWRA 84 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHHHT------S-T-------------------THHHHTT
T ss_pred CcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhHcC------CCc-------------------HHHHHHh
Confidence 679999999999999999999999888777777666321111100 001 1100001
Q ss_pred HhcCCeEEEEeCCCCCHHH-------------HHHHHH---H----HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCC
Q 005388 430 MHEGGQVGIFDATNSSRKR-------------RNMLMK---M----AEGNCKIIFLETICNDRDIIERNIRLKIQQSPD 488 (699)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~-------------R~~l~e---l----~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD 488 (699)
|=..|+++|+|......-. ...+.+ + ...|+.++=+-+.. +.+.-++|++++.. +|.
T Consensus 85 lP~~G~I~if~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhI-sk~eQ~kRl~~~~~-~p~ 161 (228)
T PF03976_consen 85 LPARGQIGIFDRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHI-SKKEQKKRLKEREE-DPL 161 (228)
T ss_dssp S--TT-EEEEES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE---HHHHHHHHHHHHH-SCC
T ss_pred CCCCCEEEEEecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEe-CHHHHHHHHHHHhc-Ccc
Confidence 1235888888877654321 111111 1 45676664443444 48999999998875 443
No 462
>CHL00195 ycf46 Ycf46; Provisional
Probab=92.87 E-value=0.3 Score=56.27 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=24.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.|.-|+|+|.||+|||++|++|+..++.
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~ 285 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQL 285 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4556899999999999999999998654
No 463
>PRK10536 hypothetical protein; Provisional
Probab=92.84 E-value=0.91 Score=48.16 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=20.7
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~ 374 (699)
+++++|-+|+|||++|.+++..
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999975
No 464
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.84 E-value=0.24 Score=49.28 Aligned_cols=122 Identities=13% Similarity=0.015 Sum_probs=60.1
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhC-CCCCCCCcCCCCHH--HHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG-VNQSADFFRADNPE--GMEARNEVAALAMEDMI 427 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g-~~~~~~f~~~~~~~--~~~~~~~vA~~~l~dl~ 427 (699)
+..|+++|.+||||||+.+.|...+.... ....+ .+....... ...-.-.+...... ......+..+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~-~~i~i--ed~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDE-RIITI--EDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRS------ 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCC-CEEEE--CCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHH------
Confidence 45799999999999999999998765322 12122 222221110 00000001110000 00001122222
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 428 SWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 428 ~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
.++..-..+|++=.-. .+....+. ....|..-.+--+++++....-+|+.....
T Consensus 96 -~lR~~pd~i~igEir~-~ea~~~~~-a~~tGh~g~~~T~Ha~s~~~~~~Rl~~~~~ 149 (186)
T cd01130 96 -ALRMRPDRIIVGEVRG-GEALDLLQ-AMNTGHPGGMTTIHANSAEEALTRLELLPS 149 (186)
T ss_pred -HhccCCCEEEEEccCc-HHHHHHHH-HHhcCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 2333455666654443 34444433 334444434566678888888888876654
No 465
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.83 E-value=0.54 Score=47.95 Aligned_cols=37 Identities=19% Similarity=0.095 Sum_probs=27.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
++-++++.|-||+|||++|.+++...-..+.++-.++
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4568899999999999999999866433455554553
No 466
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.81 E-value=0.81 Score=44.99 Aligned_cols=26 Identities=31% Similarity=0.310 Sum_probs=22.7
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.-++.++|.+|+||||+.+.|+..+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45799999999999999999997654
No 467
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.80 E-value=0.88 Score=44.50 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=23.0
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.-++.++|.+|+||||+.+.|+..+.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 45799999999999999999997654
No 468
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.78 E-value=1.3 Score=50.59 Aligned_cols=35 Identities=26% Similarity=0.189 Sum_probs=28.7
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
+++.|-||+|||+|+++++..+...+.++..++..
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 67889999999999999999987666666656543
No 469
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=92.76 E-value=0.12 Score=57.19 Aligned_cols=36 Identities=25% Similarity=0.138 Sum_probs=32.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
.+.+|.++|.|||||||+..+|.+.|...|+++-++
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~i 239 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLI 239 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 456999999999999999999999999888887666
No 470
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.74 E-value=0.5 Score=50.19 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=23.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+.-++-++|-+||||||+||.|.+-+.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 345789999999999999999997664
No 471
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.73 E-value=0.085 Score=59.44 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=23.6
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
--|+|+|.||+|||++|+.|++.+++.
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~p 135 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVP 135 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 358999999999999999999987643
No 472
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=92.70 E-value=0.32 Score=46.97 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.4
Q ss_pred EEEEccCCCChhHHHHHHHHHHh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~ 376 (699)
|+++|.+|+||||+..+|.....
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~ 24 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTG 24 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcC
Confidence 78899999999999999987644
No 473
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.68 E-value=0.12 Score=48.80 Aligned_cols=28 Identities=32% Similarity=0.209 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
...+|+|.|=-|+||||++|.|++.|+.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4679999999999999999999999864
No 474
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=92.66 E-value=0.14 Score=49.52 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.8
Q ss_pred EEEEccCCCChhHHHHHHHHH
Q 005388 354 IVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~ 374 (699)
|+++|.+|+|||||..++...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999998754
No 475
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=92.63 E-value=0.19 Score=54.34 Aligned_cols=86 Identities=12% Similarity=0.147 Sum_probs=49.3
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhh---HHHHhhCCCCC------------CCCcCCCCHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK---YRRLKHGVNQS------------ADFFRADNPEGMEAR 415 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gd---yRr~~~g~~~~------------~~f~~~~~~~~~~~~ 415 (699)
+.+|+++|..|||||.||-.|+++ . ..++|.|- ||..-.|.... .++-+....-.+...
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~-----~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f 77 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-K-----AEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIF 77 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-C-----CcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHH
Confidence 348999999999999999999988 2 24555543 33322221111 123333333334444
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Q 005388 416 NEVAALAMEDMISWMHEGGQVGIFDATNSS 445 (699)
Q Consensus 416 ~~vA~~~l~dl~~~L~~~G~vVIlDAtn~~ 445 (699)
.+.|..+++++ +.++..++|+-+|...
T Consensus 78 ~~~a~~~i~~i---~~~gk~PilvGGTglY 104 (300)
T PRK14729 78 YKEALKIIKEL---RQQKKIPIFVGGSAFY 104 (300)
T ss_pred HHHHHHHHHHH---HHCCCCEEEEeCchHH
Confidence 55555555432 3344456777777754
No 476
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.59 E-value=0.27 Score=51.53 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=31.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
+.-+++++|.||+|||++|.+++...-..|.++..+..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~ 59 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST 59 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 45689999999999999999999777666777766644
No 477
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.58 E-value=0.93 Score=44.40 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=22.7
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.-++.++|.+||||||+.+.|+..+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45799999999999999999987653
No 478
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.57 E-value=0.98 Score=44.54 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=23.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+.-++.++|.+||||||+.+.|+..+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345799999999999999999997653
No 479
>PRK09165 replicative DNA helicase; Provisional
Probab=92.56 E-value=0.96 Score=52.29 Aligned_cols=110 Identities=16% Similarity=0.103 Sum_probs=58.8
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhc---------------CCCceEeehhhHHH----Hh-h---CCCCCCCCcC
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL---------------GHDTKHFNVGKYRR----LK-H---GVNQSADFFR 405 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~---------------gi~tdv~~~gdyRr----~~-~---g~~~~~~f~~ 405 (699)
.+.-+|++.|-||.|||++|-.++...... +..+-+|+...=.. +. . +.....-...
T Consensus 215 ~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v~~~~i~~~ 294 (497)
T PRK09165 215 HPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRG 294 (497)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcC
Confidence 355689999999999999998888765422 34444554432211 11 0 1111000000
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEEE
Q 005388 406 ADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLET 467 (699)
Q Consensus 406 ~~~~~~~~~~~~vA~~~l~dl~~~L~~~G~vVIlDAtn~~~e-~R~~l~el-~~~~~~vifIE~ 467 (699)
.-.+..+..+...+.. +. .....|-|....+.. -|..++.+ .+.++.+++|.-
T Consensus 295 ~l~~~e~~~l~~a~~~--------l~-~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDy 349 (497)
T PRK09165 295 KISEEDFEKLVDASQE--------LQ-KLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDY 349 (497)
T ss_pred CCCHHHHHHHHHHHHH--------Hh-cCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 1122222222222222 22 245666676666654 57777777 567788887754
No 480
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.55 E-value=1.2 Score=43.74 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=22.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
..-++.++|..|+|||||.+.|+..+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345799999999999999999986543
No 481
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.53 E-value=0.88 Score=45.53 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=22.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
..-++.++|.+|||||||.+.|+..+
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999999765
No 482
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.52 E-value=0.092 Score=58.65 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.|.-|+++|.||+|||++|++++..++.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~ 191 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNA 191 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCC
Confidence 4556999999999999999999998653
No 483
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.51 E-value=0.098 Score=56.80 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
+-.++++|.||+||||+|+.+++.+++
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 345789999999999999999999764
No 484
>PRK06851 hypothetical protein; Provisional
Probab=92.49 E-value=0.16 Score=56.33 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=31.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
...+++|+|.||+||||+.++|.+.+...|.++..+
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~ 64 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFL 64 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 467899999999999999999999998778777666
No 485
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.46 E-value=1.4 Score=46.19 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=25.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcC
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~g 379 (699)
.|+=++++|-+||||||+...|-..+....
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f 41 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKF 41 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccC
Confidence 467799999999999999999998876543
No 486
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.45 E-value=0.22 Score=52.60 Aligned_cols=38 Identities=32% Similarity=0.360 Sum_probs=30.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
+..+|=++|.||+|||||-.+|.+++...+.++-++-.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAV 65 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAV 65 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEE
Confidence 56789999999999999999999999988888877754
No 487
>PRK05748 replicative DNA helicase; Provisional
Probab=92.43 E-value=1.3 Score=50.35 Aligned_cols=110 Identities=12% Similarity=0.086 Sum_probs=60.6
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhh-cCCCceEeehhh----HHHHh-hCCC-CCCC-Cc-CCCCHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGK----YRRLK-HGVN-QSAD-FF-RADNPEGMEARNEVA 419 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~-~gi~tdv~~~gd----yRr~~-~g~~-~~~~-f~-~~~~~~~~~~~~~vA 419 (699)
.+.-+|++.|-||.|||++|-.++..... .+.++-+|+... +.++. .... .+.. +. ..-....+..+.+.+
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~ 280 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAM 280 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHH
Confidence 35678999999999999999999987653 366666666432 22211 1111 0100 10 011222222222222
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEEE
Q 005388 420 ALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLET 467 (699)
Q Consensus 420 ~~~l~dl~~~L~~~G~vVIlDAtn~~~e-~R~~l~el-~~~-~~~vifIE~ 467 (699)
. .+.+ ....|.|..+.+.. -|..++.+ .+. ++++++|.-
T Consensus 281 ~--------~l~~-~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDy 322 (448)
T PRK05748 281 G--------SLSD-APIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDY 322 (448)
T ss_pred H--------HHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 2 2322 44666666666654 57777777 454 688777764
No 488
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.42 E-value=0.43 Score=50.12 Aligned_cols=118 Identities=9% Similarity=0.021 Sum_probs=62.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCC-CCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-DFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~-~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
....|+++|-+||||||+.+.|..++.... ..++...+-++... ..... .+........+ .++.+.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~--~~iv~iEd~~E~~l-~~~~~~~~~~~~~~~~~---~~~l~~------- 192 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPED--ERIVTIEDPPELRL-PGPNQIQIQTRRDEISY---EDLLKS------- 192 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTT--SEEEEEESSS-S---SCSSEEEEEEETTTBSH---HHHHHH-------
T ss_pred cceEEEEECCCccccchHHHHHhhhccccc--cceEEeccccceee-cccceEEEEeecCcccH---HHHHHH-------
Confidence 367899999999999999999998876552 23332223222111 11110 11111001011 122222
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 005388 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (699)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r 482 (699)
.|+.+-..+|++=.-....... .+....|..+.+--+++++....-.|+..-
T Consensus 193 ~LR~~pD~iiigEiR~~e~~~~--~~a~~tGh~~~~tT~Ha~s~~~~i~Rl~~l 244 (270)
T PF00437_consen 193 ALRQDPDVIIIGEIRDPEAAEA--IQAANTGHLGSLTTLHANSAEDAIERLADL 244 (270)
T ss_dssp HTTS--SEEEESCE-SCHHHHH--HHHHHTT-EEEEEEEE-SSHHHHHHHHHHH
T ss_pred HhcCCCCcccccccCCHhHHHH--HHhhccCCceeeeeeecCCHHHHHHHHHHH
Confidence 2444567888876666544433 334455666657778889998888888654
No 489
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=92.38 E-value=0.091 Score=57.94 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.|.-|+++|.||+|||++|++++..+..
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~ 182 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNA 182 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCC
Confidence 3556899999999999999999998654
No 490
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=92.37 E-value=0.12 Score=52.29 Aligned_cols=27 Identities=41% Similarity=0.377 Sum_probs=24.1
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
|+.|.++|.+||||||+.+.|.+.+..
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 578999999999999999999988764
No 491
>PRK10646 ADP-binding protein; Provisional
Probab=92.35 E-value=0.13 Score=50.24 Aligned_cols=28 Identities=25% Similarity=0.151 Sum_probs=25.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.+.+|+|.|=-|+||||++|.|++.|+.
T Consensus 27 ~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 27 GATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4568999999999999999999999874
No 492
>PHA02542 41 41 helicase; Provisional
Probab=92.33 E-value=1.1 Score=51.38 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=32.9
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
.+.-+|++.|-||.||||+|-.++......|.++-+|+..
T Consensus 188 ~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLE 227 (473)
T PHA02542 188 ERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISME 227 (473)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEecc
Confidence 4567899999999999999999998876567777777653
No 493
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=0.38 Score=57.68 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=29.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
-|.=++|+|+||+|||-||+++|-. -+++-.-+++.++-.
T Consensus 343 iPkGvLL~GPPGTGKTLLAKAiAGE---AgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 343 IPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSVSGSEFVE 382 (774)
T ss_pred CcCceEEECCCCCcHHHHHHHHhcc---cCCceeeechHHHHH
Confidence 3445899999999999999999965 556655555555543
No 494
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=92.27 E-value=0.34 Score=45.59 Aligned_cols=22 Identities=32% Similarity=0.253 Sum_probs=19.7
Q ss_pred EEEEEEccCCCChhHHHHHHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~ 373 (699)
++|.++|-|++|||||..+|..
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhC
Confidence 4789999999999999999973
No 495
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.25 E-value=0.74 Score=44.83 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=22.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
..-++.++|.+|+|||||.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999998654
No 496
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.24 E-value=0.17 Score=54.47 Aligned_cols=50 Identities=24% Similarity=0.319 Sum_probs=39.5
Q ss_pred HHHHhhhcCCCCCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 337 AAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 337 ~~l~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
.++....+. ....+.+|=++|.||+||||+--+|.+.|...|+++-++..
T Consensus 38 ~~ll~~l~p-~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAV 87 (323)
T COG1703 38 RELLRALYP-RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAV 87 (323)
T ss_pred HHHHHHHhh-cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEE
Confidence 344444333 34467789999999999999999999999999998888754
No 497
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.23 E-value=0.14 Score=55.10 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=28.4
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
.+..+|.++|.||||||||...|.+.|... .++-++
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEE
Confidence 467899999999999999999999887543 234444
No 498
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.17 E-value=1.7 Score=50.71 Aligned_cols=29 Identities=31% Similarity=0.334 Sum_probs=25.5
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+.-+-+++++|.||+||||+|+.|++.|.
T Consensus 33 grl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 33 NRLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred CCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 34566899999999999999999999975
No 499
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.12 E-value=1.3 Score=48.96 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=25.5
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
..|-.++++|-+|.||||+|+.+++.|.-
T Consensus 43 rl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 43 KLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 34568999999999999999999999864
No 500
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=92.09 E-value=0.51 Score=41.26 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=39.9
Q ss_pred EEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCc-eeeEEEEe
Q 005388 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHET-LDFKFLLK 96 (699)
Q Consensus 32 ~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~-leyKf~~~ 96 (699)
.|+|++-||. -+.+.|.|+.. ..+.++|+....+.|++++ +.++.. -.|+|++-
T Consensus 7 ~v~F~vwAP~---A~~V~L~~~~~------~~~~~~m~~~~~G~W~~~v--~~l~~g~Y~Y~~~vd 61 (85)
T cd02858 7 TVTFRLFAPK---ANEVQVRGSWG------GAGSHPMTKDEAGVWSVTT--GPLAPGIYTYSFLVD 61 (85)
T ss_pred cEEEEEECCC---CCEEEEEeecC------CCccEeCeECCCeEEEEEE--CCCCCcEEEEEEEEC
Confidence 4899999995 35677776542 3457899999999999998 335443 48888874
Done!