Query 005388
Match_columns 699
No_of_seqs 534 out of 3031
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 23:56:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2axn_A 6-phosphofructo-2-kinas 100.0 7.2E-62 2.5E-66 550.8 37.7 339 349-695 33-379 (520)
2 1bif_A 6-phosphofructo-2-kinas 100.0 8.1E-60 2.8E-64 527.3 38.1 339 349-695 37-382 (469)
3 1fzt_A Phosphoglycerate mutase 99.9 1.1E-26 3.8E-31 232.4 13.7 140 553-695 1-149 (211)
4 1h2e_A Phosphatase, YHFR; hydr 99.9 2.2E-26 7.4E-31 230.0 14.6 134 560-697 2-140 (207)
5 2a6p_A Possible phosphoglycera 99.9 5.9E-26 2E-30 227.4 13.1 136 552-696 3-141 (208)
6 3kkk_A Phosphoglycerate mutase 99.9 6.8E-25 2.3E-29 225.5 14.5 140 554-695 6-178 (258)
7 1e58_A Phosphoglycerate mutase 99.9 6.7E-25 2.3E-29 224.6 14.2 136 559-696 2-171 (249)
8 3hjg_A Putative alpha-ribazole 99.9 3.6E-25 1.2E-29 222.4 11.4 133 557-697 3-140 (213)
9 1yfk_A Phosphoglycerate mutase 99.9 1.7E-24 5.9E-29 223.9 16.0 136 558-695 2-172 (262)
10 3d8h_A Glycolytic phosphoglyce 99.9 2E-24 6.7E-29 224.3 15.5 135 559-695 20-188 (267)
11 2hhj_A Bisphosphoglycerate mut 99.9 9.9E-25 3.4E-29 226.3 13.0 138 557-696 1-176 (267)
12 3gp3_A 2,3-bisphosphoglycerate 99.9 1.3E-24 4.3E-29 223.6 12.9 138 556-695 6-176 (257)
13 1qhf_A Protein (phosphoglycera 99.9 3.4E-24 1.2E-28 218.2 14.9 135 560-696 1-169 (240)
14 4emb_A 2,3-bisphosphoglycerate 99.9 3.3E-24 1.1E-28 223.0 14.8 136 558-695 26-194 (274)
15 1rii_A 2,3-bisphosphoglycerate 99.9 4.6E-24 1.6E-28 221.8 14.8 135 559-695 4-170 (265)
16 4eo9_A 2,3-bisphosphoglycerate 99.9 6.1E-24 2.1E-28 220.5 14.4 134 559-694 27-191 (268)
17 2qni_A AGR_C_517P, uncharacter 99.9 5.3E-24 1.8E-28 215.4 13.5 134 554-697 16-152 (219)
18 3dcy_A Regulator protein; OMIM 99.9 5.1E-24 1.7E-28 221.9 12.1 135 555-697 4-148 (275)
19 3e9c_A ZGC:56074; histidine ph 99.9 5.4E-24 1.9E-28 220.5 11.4 131 558-696 2-142 (265)
20 1v37_A Phosphoglycerate mutase 99.9 3.9E-24 1.3E-28 209.1 7.6 122 560-693 1-124 (177)
21 3f3k_A Uncharacterized protein 99.9 6.8E-24 2.3E-28 219.6 9.0 136 557-697 3-159 (265)
22 3r7a_A Phosphoglycerate mutase 99.9 1.8E-23 6.2E-28 212.2 11.9 133 558-696 12-168 (237)
23 3d4i_A STS-2 protein; PGM, 2H- 99.9 5.8E-22 2E-26 205.5 8.7 137 556-697 6-190 (273)
24 3c7t_A Ecdysteroid-phosphate p 99.9 1.1E-21 3.6E-26 202.6 10.4 136 558-697 3-180 (263)
25 3mbk_A Ubiquitin-associated an 99.8 5.4E-21 1.8E-25 197.4 9.6 134 560-697 1-181 (264)
26 3eoz_A Putative phosphoglycera 99.7 9.3E-19 3.2E-23 175.8 6.2 119 557-696 19-141 (214)
27 3mxo_A Serine/threonine-protei 99.7 1.1E-17 3.8E-22 165.9 10.5 117 556-696 7-127 (202)
28 2z0b_A GDE5, KIAA1434, putativ 99.7 2.4E-17 8.3E-22 154.3 10.2 90 27-118 5-108 (131)
29 1ac0_A Glucoamylase; hydrolase 99.7 1.8E-17 6.1E-22 149.9 8.1 90 28-121 4-97 (108)
30 1ujc_A Phosphohistidine phosph 99.6 6.6E-15 2.3E-19 141.3 10.6 63 560-626 1-63 (161)
31 3bmv_A Cyclomaltodextrin gluca 99.6 5.1E-15 1.8E-19 172.6 11.0 96 27-126 580-679 (683)
32 1d3c_A Cyclodextrin glycosyltr 99.6 5.4E-15 1.8E-19 172.5 11.0 96 27-126 583-682 (686)
33 1cyg_A Cyclodextrin glucanotra 99.6 5.7E-15 2E-19 172.1 10.9 97 27-126 576-676 (680)
34 2rfl_A Putative phosphohistidi 99.5 8.1E-15 2.8E-19 142.3 8.5 80 559-642 8-94 (173)
35 1vem_A Beta-amylase; beta-alph 99.5 1.4E-13 4.7E-18 155.6 11.1 97 27-126 416-514 (516)
36 2vn4_A Glucoamylase; hydrolase 99.4 8.7E-13 3E-17 151.5 12.3 89 27-119 493-585 (599)
37 3zvl_A Bifunctional polynucleo 99.3 3E-12 1E-16 140.9 12.1 138 348-527 255-396 (416)
38 3f2i_A ALR0221 protein; alpha- 99.3 1E-12 3.5E-17 128.2 7.3 65 560-626 1-65 (172)
39 1gcy_A Glucan 1,4-alpha-maltot 99.3 1E-13 3.4E-18 157.0 0.0 91 27-118 427-519 (527)
40 1ly1_A Polynucleotide kinase; 99.3 2.9E-12 1E-16 122.3 9.9 121 351-484 2-128 (181)
41 4hbz_A Putative phosphohistidi 99.3 1.2E-12 4.1E-17 129.2 6.9 77 558-639 18-95 (186)
42 1qho_A Alpha-amylase; glycosid 99.3 3.2E-12 1.1E-16 149.1 10.5 90 27-119 578-675 (686)
43 2rhm_A Putative kinase; P-loop 99.3 9.5E-11 3.3E-15 113.2 17.6 123 350-484 4-127 (193)
44 3fjy_A Probable MUTT1 protein; 99.3 1.3E-12 4.6E-17 141.0 4.8 87 557-647 180-270 (364)
45 3a4m_A L-seryl-tRNA(SEC) kinas 99.2 7.8E-11 2.7E-15 121.2 15.4 118 350-483 3-121 (260)
46 2yvu_A Probable adenylyl-sulfa 99.2 1.4E-10 4.9E-15 112.3 14.4 121 349-481 11-132 (186)
47 1ltq_A Polynucleotide kinase; 99.2 1.5E-10 5.2E-15 120.4 14.5 122 351-484 2-128 (301)
48 1m8p_A Sulfate adenylyltransfe 99.2 2.8E-10 9.4E-15 130.3 17.0 142 325-479 370-513 (573)
49 3uie_A Adenylyl-sulfate kinase 99.1 3E-10 1E-14 111.7 13.2 117 350-479 24-140 (200)
50 2gks_A Bifunctional SAT/APS ki 99.1 2.1E-10 7.1E-15 130.7 12.4 144 323-480 344-488 (546)
51 1qhx_A CPT, protein (chloramph 99.1 4.3E-10 1.5E-14 107.6 12.5 124 351-483 3-134 (178)
52 1gvn_B Zeta; postsegregational 99.1 1.7E-09 5.9E-14 113.3 18.0 153 348-509 30-188 (287)
53 3t61_A Gluconokinase; PSI-biol 99.1 3.4E-10 1.1E-14 111.2 10.3 116 350-484 17-133 (202)
54 1x6v_B Bifunctional 3'-phospho 99.0 1.1E-09 3.9E-14 126.1 14.9 120 349-480 50-170 (630)
55 1m7g_A Adenylylsulfate kinase; 99.0 1.6E-09 5.6E-14 107.4 13.8 118 350-479 24-149 (211)
56 2p5t_B PEZT; postsegregational 99.0 1.2E-09 4E-14 111.8 11.4 125 348-483 29-158 (253)
57 2bwj_A Adenylate kinase 5; pho 99.0 6.5E-09 2.2E-13 100.7 15.7 146 350-516 11-164 (199)
58 1tev_A UMP-CMP kinase; ploop, 99.0 1.4E-08 4.8E-13 97.7 16.4 150 350-515 2-161 (196)
59 2c95_A Adenylate kinase 1; tra 99.0 1.9E-09 6.5E-14 104.3 10.0 145 350-515 8-160 (196)
60 3lw7_A Adenylate kinase relate 98.9 8E-09 2.7E-13 97.0 12.7 120 352-484 2-124 (179)
61 2vli_A Antibiotic resistance p 98.9 3.7E-09 1.3E-13 101.3 10.6 121 350-483 4-126 (183)
62 3trf_A Shikimate kinase, SK; a 98.9 1.7E-09 5.9E-14 104.1 8.1 139 351-511 5-148 (185)
63 4eun_A Thermoresistant glucoki 98.9 1.6E-09 5.5E-14 106.5 7.8 113 350-483 28-146 (200)
64 2pez_A Bifunctional 3'-phospho 98.9 1.2E-08 4.2E-13 98.0 13.5 119 350-480 4-123 (179)
65 3vaa_A Shikimate kinase, SK; s 98.9 3.9E-09 1.3E-13 103.7 9.6 129 351-498 25-153 (199)
66 1knq_A Gluconate kinase; ALFA/ 98.9 7.4E-09 2.5E-13 98.9 10.3 113 350-483 7-125 (175)
67 1qf9_A UMP/CMP kinase, protein 98.8 6.7E-08 2.3E-12 92.7 16.5 146 350-515 5-158 (194)
68 2iyv_A Shikimate kinase, SK; t 98.8 5.5E-09 1.9E-13 100.6 8.8 136 352-510 3-141 (184)
69 2cdn_A Adenylate kinase; phosp 98.8 2.1E-08 7.3E-13 98.2 12.5 144 349-516 18-171 (201)
70 3umf_A Adenylate kinase; rossm 98.8 8E-08 2.7E-12 97.0 14.5 146 347-516 25-181 (217)
71 1ukz_A Uridylate kinase; trans 98.8 2.4E-07 8.4E-12 90.4 17.3 119 350-483 14-142 (203)
72 3cm0_A Adenylate kinase; ATP-b 98.7 1.8E-08 6.2E-13 96.9 8.2 115 350-483 3-127 (186)
73 3kb2_A SPBC2 prophage-derived 98.7 5.3E-08 1.8E-12 91.9 9.7 99 353-483 3-116 (173)
74 1kht_A Adenylate kinase; phosp 98.7 7E-08 2.4E-12 92.6 10.1 40 351-390 3-42 (192)
75 1aky_A Adenylate kinase; ATP:A 98.7 1E-07 3.5E-12 94.7 11.7 119 350-483 3-133 (220)
76 3fb4_A Adenylate kinase; psych 98.6 1E-08 3.4E-13 101.4 3.7 146 353-517 2-183 (216)
77 3be4_A Adenylate kinase; malar 98.6 1.4E-07 4.8E-12 93.8 12.0 118 350-483 4-133 (217)
78 1nks_A Adenylate kinase; therm 98.6 6.2E-08 2.1E-12 92.9 8.5 40 352-391 2-41 (194)
79 2pt5_A Shikimate kinase, SK; a 98.6 5.8E-08 2E-12 91.8 8.0 135 352-509 1-137 (168)
80 2xb4_A Adenylate kinase; ATP-b 98.6 1.4E-07 4.6E-12 94.6 10.2 115 352-483 1-127 (223)
81 1e6c_A Shikimate kinase; phosp 98.6 1.4E-07 4.9E-12 89.3 9.5 110 352-482 3-116 (173)
82 3cr8_A Sulfate adenylyltranfer 98.6 1.5E-07 5.3E-12 107.1 11.2 144 324-480 342-487 (552)
83 2plr_A DTMP kinase, probable t 98.6 7.8E-07 2.7E-11 86.6 14.7 30 350-379 3-32 (213)
84 3tlx_A Adenylate kinase 2; str 98.6 1.9E-07 6.5E-12 95.0 10.4 151 349-517 27-212 (243)
85 3dl0_A Adenylate kinase; phosp 98.5 1.8E-07 6.2E-12 92.4 9.2 116 353-482 2-127 (216)
86 3sr0_A Adenylate kinase; phosp 98.5 1.5E-06 5.1E-11 86.8 15.6 145 352-517 1-173 (206)
87 1zd8_A GTP:AMP phosphotransfer 98.5 4.6E-08 1.6E-12 97.8 4.5 147 350-516 6-183 (227)
88 1via_A Shikimate kinase; struc 98.5 1.2E-07 4.3E-12 90.6 6.5 133 353-510 6-139 (175)
89 1nn5_A Similar to deoxythymidy 98.5 2.3E-06 8E-11 83.6 15.4 37 350-386 8-44 (215)
90 1zuh_A Shikimate kinase; alpha 98.4 4E-07 1.4E-11 86.3 7.8 39 353-396 9-47 (168)
91 3nwj_A ATSK2; P loop, shikimat 98.4 4.9E-07 1.7E-11 93.1 8.0 139 351-511 48-199 (250)
92 1ak2_A Adenylate kinase isoenz 98.4 3.7E-07 1.3E-11 91.8 6.8 116 350-483 15-144 (233)
93 4eaq_A DTMP kinase, thymidylat 98.4 9.1E-06 3.1E-10 82.1 16.8 140 350-508 25-189 (229)
94 2bdt_A BH3686; alpha-beta prot 98.4 4.9E-06 1.7E-10 80.3 14.1 114 351-483 2-123 (189)
95 1e4v_A Adenylate kinase; trans 98.4 2.7E-07 9.1E-12 91.4 5.1 33 353-390 2-34 (214)
96 2pbr_A DTMP kinase, thymidylat 98.3 2.4E-06 8.2E-11 82.0 11.2 30 352-381 1-30 (195)
97 2ze6_A Isopentenyl transferase 98.3 1.6E-06 5.5E-11 88.8 10.5 115 352-484 2-140 (253)
98 1kag_A SKI, shikimate kinase I 98.3 6.7E-07 2.3E-11 84.8 6.4 39 351-394 4-42 (173)
99 3iij_A Coilin-interacting nucl 98.3 4.7E-07 1.6E-11 86.8 5.0 39 350-393 10-48 (180)
100 2z0h_A DTMP kinase, thymidylat 98.3 1.3E-05 4.5E-10 77.1 15.0 32 352-383 1-32 (197)
101 1zak_A Adenylate kinase; ATP:A 98.3 5E-06 1.7E-10 82.5 11.8 33 350-382 4-36 (222)
102 4tmk_A Protein (thymidylate ki 98.2 3.6E-05 1.2E-09 77.2 17.3 30 351-380 3-32 (213)
103 2wwf_A Thymidilate kinase, put 98.2 7E-07 2.4E-11 87.3 4.5 37 350-386 9-45 (212)
104 1g8f_A Sulfate adenylyltransfe 98.2 1E-06 3.6E-11 99.4 5.7 67 322-388 366-434 (511)
105 1uj2_A Uridine-cytidine kinase 98.2 7.1E-06 2.4E-10 83.5 10.8 43 349-391 20-67 (252)
106 4edh_A DTMP kinase, thymidylat 98.1 0.00015 5E-09 72.6 19.9 36 350-385 5-40 (213)
107 3lv8_A DTMP kinase, thymidylat 98.1 8.6E-05 2.9E-09 75.7 18.2 36 350-385 26-62 (236)
108 2qor_A Guanylate kinase; phosp 98.1 6.8E-06 2.3E-10 80.7 9.2 27 350-376 11-37 (204)
109 1y63_A LMAJ004144AAA protein; 98.1 4.5E-06 1.5E-10 80.8 7.7 38 350-392 9-47 (184)
110 3gmt_A Adenylate kinase; ssgci 98.1 1.7E-05 5.7E-10 80.8 11.7 146 350-517 7-187 (230)
111 3fdi_A Uncharacterized protein 98.0 7.4E-06 2.5E-10 81.2 8.1 31 351-381 6-36 (201)
112 2jaq_A Deoxyguanosine kinase; 98.0 2.2E-05 7.4E-10 75.9 11.2 25 353-377 2-26 (205)
113 3hdt_A Putative kinase; struct 98.0 3.1E-05 1.1E-09 78.2 12.5 36 350-385 13-48 (223)
114 2f6r_A COA synthase, bifunctio 98.0 4.9E-05 1.7E-09 79.0 13.4 37 350-392 74-110 (281)
115 3v9p_A DTMP kinase, thymidylat 98.0 4E-05 1.4E-09 77.7 12.0 36 350-385 24-63 (227)
116 2grj_A Dephospho-COA kinase; T 97.9 3.3E-05 1.1E-09 76.2 10.5 40 348-392 9-48 (192)
117 1zp6_A Hypothetical protein AT 97.9 3.6E-05 1.2E-09 73.9 10.5 119 350-482 8-126 (191)
118 1vht_A Dephospho-COA kinase; s 97.9 7E-05 2.4E-09 73.9 12.8 37 350-392 3-39 (218)
119 3ake_A Cytidylate kinase; CMP 97.9 3.4E-05 1.1E-09 74.9 9.5 35 353-392 4-38 (208)
120 1uf9_A TT1252 protein; P-loop, 97.9 4.4E-05 1.5E-09 73.8 9.9 39 348-392 5-43 (203)
121 4gp7_A Metallophosphoesterase; 97.9 0.00019 6.4E-09 68.7 14.1 133 350-509 8-141 (171)
122 1gtv_A TMK, thymidylate kinase 97.9 6.3E-06 2.1E-10 80.6 3.6 32 352-383 1-32 (214)
123 3tr0_A Guanylate kinase, GMP k 97.8 6.9E-05 2.3E-09 72.7 10.7 26 351-376 7-32 (205)
124 2bbw_A Adenylate kinase 4, AK4 97.8 9.1E-05 3.1E-09 74.7 11.5 30 350-379 26-55 (246)
125 1jjv_A Dephospho-COA kinase; P 97.8 0.00024 8.4E-09 69.2 13.1 35 352-392 3-37 (206)
126 2if2_A Dephospho-COA kinase; a 97.7 4.3E-05 1.5E-09 74.4 7.1 34 353-392 3-36 (204)
127 3a8t_A Adenylate isopentenyltr 97.7 0.00013 4.6E-09 78.1 11.4 36 348-383 37-72 (339)
128 3ld9_A DTMP kinase, thymidylat 97.7 0.00037 1.3E-08 70.4 13.7 36 349-384 19-55 (223)
129 3tau_A Guanylate kinase, GMP k 97.7 3E-05 1E-09 76.6 5.3 27 350-376 7-33 (208)
130 2qt1_A Nicotinamide riboside k 97.7 0.00011 3.7E-09 71.9 9.0 37 350-390 20-56 (207)
131 4hlc_A DTMP kinase, thymidylat 97.7 0.0015 5.1E-08 64.8 17.3 156 352-527 3-183 (205)
132 3a00_A Guanylate kinase, GMP k 97.6 8.3E-05 2.8E-09 71.9 7.4 25 352-376 2-26 (186)
133 3crm_A TRNA delta(2)-isopenten 97.6 0.00018 6.3E-09 76.6 10.5 32 351-382 5-36 (323)
134 1q3t_A Cytidylate kinase; nucl 97.6 0.001 3.5E-08 66.6 15.2 38 350-392 15-52 (236)
135 1ex7_A Guanylate kinase; subst 97.6 0.00011 3.8E-09 72.2 7.7 23 354-376 4-26 (186)
136 2h92_A Cytidylate kinase; ross 97.6 0.0013 4.5E-08 64.5 15.5 36 351-391 3-38 (219)
137 4i1u_A Dephospho-COA kinase; s 97.6 0.00027 9.3E-09 70.8 10.4 134 350-510 8-168 (210)
138 3hjn_A DTMP kinase, thymidylat 97.5 0.0048 1.6E-07 60.7 18.0 34 352-385 1-34 (197)
139 2laa_A Beta/alpha-amylase; SBD 97.4 0.00027 9.1E-09 63.3 7.3 77 27-117 3-80 (104)
140 3ch4_B Pmkase, phosphomevalona 97.4 0.0019 6.6E-08 64.3 14.1 124 349-478 9-143 (202)
141 1p5z_B DCK, deoxycytidine kina 97.3 0.00031 1E-08 71.7 7.3 28 349-376 22-49 (263)
142 2v54_A DTMP kinase, thymidylat 97.3 0.00046 1.6E-08 66.7 8.0 26 350-375 3-28 (204)
143 3dm5_A SRP54, signal recogniti 97.3 0.00072 2.5E-08 75.0 10.3 43 350-392 99-141 (443)
144 2j41_A Guanylate kinase; GMP, 97.3 0.00066 2.2E-08 65.6 8.6 26 350-375 5-30 (207)
145 3r20_A Cytidylate kinase; stru 97.1 0.0045 1.5E-07 62.9 13.4 38 350-392 8-45 (233)
146 1s96_A Guanylate kinase, GMP k 97.0 0.0032 1.1E-07 63.1 11.0 121 350-482 15-150 (219)
147 1a7j_A Phosphoribulokinase; tr 97.0 0.00037 1.2E-08 72.9 4.2 42 350-391 4-45 (290)
148 1rz3_A Hypothetical protein rb 96.9 0.0016 5.3E-08 63.7 7.4 44 348-391 19-62 (201)
149 1kgd_A CASK, peripheral plasma 96.9 0.00045 1.5E-08 66.4 3.4 26 351-376 5-30 (180)
150 3kl4_A SRP54, signal recogniti 96.9 0.0029 9.8E-08 70.0 10.1 44 349-392 95-138 (433)
151 3ec2_A DNA replication protein 96.8 0.006 2E-07 58.0 10.7 41 351-391 38-79 (180)
152 1vma_A Cell division protein F 96.8 0.0047 1.6E-07 65.1 10.5 43 349-391 102-144 (306)
153 1cke_A CK, MSSA, protein (cyti 96.8 0.00052 1.8E-08 67.6 2.8 37 351-392 5-41 (227)
154 3tmk_A Thymidylate kinase; pho 96.6 0.0082 2.8E-07 60.2 10.0 28 350-377 4-31 (216)
155 2j37_W Signal recognition part 96.5 0.0079 2.7E-07 67.7 10.8 43 349-391 99-141 (504)
156 2xxa_A Signal recognition part 96.5 0.006 2.1E-07 67.4 9.3 43 349-391 98-141 (433)
157 3lnc_A Guanylate kinase, GMP k 96.4 0.0065 2.2E-07 60.3 8.3 26 350-375 26-52 (231)
158 1zu4_A FTSY; GTPase, signal re 96.4 0.012 4.2E-07 62.3 10.7 42 349-390 103-144 (320)
159 3d3q_A TRNA delta(2)-isopenten 96.4 0.0047 1.6E-07 66.2 7.2 35 351-390 7-41 (340)
160 3syl_A Protein CBBX; photosynt 96.3 0.031 1.1E-06 57.4 13.0 31 350-380 66-96 (309)
161 3c8u_A Fructokinase; YP_612366 96.3 0.0058 2E-07 59.9 6.8 41 348-388 19-59 (208)
162 2qby_B CDC6 homolog 3, cell di 96.3 0.017 5.9E-07 60.9 11.0 29 350-378 44-72 (384)
163 4e22_A Cytidylate kinase; P-lo 96.3 0.0013 4.5E-08 66.8 2.2 30 350-379 26-55 (252)
164 1odf_A YGR205W, hypothetical 3 96.3 0.0039 1.3E-07 65.2 5.8 43 348-390 28-73 (290)
165 2chg_A Replication factor C sm 96.3 0.016 5.6E-07 55.2 9.8 28 354-381 41-68 (226)
166 2ffh_A Protein (FFH); SRP54, s 96.2 0.017 5.7E-07 63.7 10.7 42 350-391 97-138 (425)
167 3foz_A TRNA delta(2)-isopenten 96.2 0.0075 2.6E-07 63.9 7.5 28 350-377 9-36 (316)
168 3ney_A 55 kDa erythrocyte memb 96.1 0.007 2.4E-07 59.9 6.6 27 350-376 18-44 (197)
169 1jbk_A CLPB protein; beta barr 96.1 0.016 5.4E-07 54.0 8.7 27 351-377 43-69 (195)
170 3exa_A TRNA delta(2)-isopenten 96.1 0.0064 2.2E-07 64.6 6.5 27 351-377 3-29 (322)
171 2w58_A DNAI, primosome compone 96.0 0.015 5E-07 56.2 8.0 39 352-390 55-93 (202)
172 2ocp_A DGK, deoxyguanosine kin 96.0 0.0031 1.1E-07 63.2 3.4 27 350-376 1-27 (241)
173 1j8m_F SRP54, signal recogniti 96.0 0.019 6.5E-07 60.1 9.2 40 351-390 98-137 (297)
174 2v1u_A Cell division control p 95.9 0.029 1E-06 58.8 10.2 28 350-377 43-70 (387)
175 3bos_A Putative DNA replicatio 95.8 0.0079 2.7E-07 58.7 5.4 40 351-390 52-91 (242)
176 2z4s_A Chromosomal replication 95.8 0.065 2.2E-06 59.0 13.3 39 351-389 130-170 (440)
177 3eph_A TRNA isopentenyltransfe 95.8 0.012 4.1E-07 64.5 7.2 28 351-378 2-29 (409)
178 2yhs_A FTSY, cell division pro 95.8 0.013 4.4E-07 65.8 7.6 42 349-390 291-332 (503)
179 1l8q_A Chromosomal replication 95.8 0.039 1.3E-06 57.5 10.9 39 352-390 38-76 (324)
180 3t15_A Ribulose bisphosphate c 95.8 0.011 3.7E-07 61.4 6.6 40 348-390 33-72 (293)
181 1xjc_A MOBB protein homolog; s 95.8 0.0074 2.5E-07 58.4 4.8 35 352-386 5-39 (169)
182 1njg_A DNA polymerase III subu 95.8 0.033 1.1E-06 53.6 9.4 28 351-378 45-72 (250)
183 3tqc_A Pantothenate kinase; bi 95.8 0.01 3.5E-07 63.1 6.1 43 348-390 89-133 (321)
184 3e70_C DPA, signal recognition 95.7 0.039 1.3E-06 58.7 10.5 40 349-388 127-166 (328)
185 3eie_A Vacuolar protein sortin 95.7 0.06 2.1E-06 56.3 11.6 28 350-377 50-77 (322)
186 3h4m_A Proteasome-activating n 95.6 0.042 1.4E-06 55.8 10.1 26 351-376 51-76 (285)
187 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.04 1.4E-06 54.9 9.7 27 350-376 38-64 (262)
188 4a1f_A DNAB helicase, replicat 95.6 0.053 1.8E-06 57.9 10.9 109 350-467 45-164 (338)
189 3asz_A Uridine kinase; cytidin 95.5 0.0089 3.1E-07 58.1 4.3 27 350-376 5-31 (211)
190 1yrb_A ATP(GTP)binding protein 95.5 0.013 4.4E-07 58.8 5.5 39 349-388 12-50 (262)
191 2v3c_C SRP54, signal recogniti 95.5 0.005 1.7E-07 68.0 2.6 42 350-391 98-139 (432)
192 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.09 3.1E-06 55.3 11.9 26 350-375 44-69 (322)
193 1sq5_A Pantothenate kinase; P- 95.4 0.015 5.3E-07 60.8 5.9 42 349-390 78-121 (308)
194 2cvh_A DNA repair and recombin 95.3 0.059 2E-06 52.1 9.4 35 350-387 19-53 (220)
195 1u94_A RECA protein, recombina 95.3 0.062 2.1E-06 57.7 10.4 38 350-387 62-99 (356)
196 1iqp_A RFCS; clamp loader, ext 95.3 0.037 1.3E-06 56.8 8.2 24 354-377 49-72 (327)
197 3te6_A Regulatory protein SIR3 95.3 0.092 3.1E-06 55.6 11.4 29 349-377 43-71 (318)
198 2qp9_X Vacuolar protein sortin 95.3 0.064 2.2E-06 57.2 10.3 26 351-376 84-109 (355)
199 2vhj_A Ntpase P4, P4; non- hyd 95.2 0.041 1.4E-06 58.6 8.5 24 351-374 123-146 (331)
200 1ls1_A Signal recognition part 95.2 0.069 2.4E-06 55.7 10.1 40 350-389 97-136 (295)
201 2px0_A Flagellar biosynthesis 95.1 0.012 4.2E-07 61.5 4.1 42 350-391 104-146 (296)
202 1fnn_A CDC6P, cell division co 95.1 0.12 4.3E-06 54.2 12.0 34 353-386 46-80 (389)
203 1ofh_A ATP-dependent HSL prote 95.1 0.042 1.4E-06 56.0 7.9 36 351-389 50-85 (310)
204 2q6t_A DNAB replication FORK h 95.1 0.23 7.8E-06 54.5 14.3 109 350-467 199-318 (444)
205 3d8b_A Fidgetin-like protein 1 95.0 0.13 4.6E-06 54.6 12.0 27 350-376 116-142 (357)
206 1sxj_E Activator 1 40 kDa subu 95.0 0.045 1.6E-06 57.3 8.1 26 350-376 36-61 (354)
207 4b4t_M 26S protease regulatory 95.0 0.047 1.6E-06 60.3 8.5 28 350-377 214-241 (434)
208 1rj9_A FTSY, signal recognitio 95.0 0.016 5.5E-07 61.0 4.5 38 350-387 101-138 (304)
209 3bh0_A DNAB-like replicative h 95.0 0.28 9.7E-06 51.3 14.1 38 350-387 67-104 (315)
210 2kjq_A DNAA-related protein; s 94.9 0.019 6.5E-07 53.8 4.4 37 351-387 36-72 (149)
211 1sxj_B Activator 1 37 kDa subu 94.9 0.048 1.6E-06 55.9 7.8 24 354-377 45-68 (323)
212 3u61_B DNA polymerase accessor 94.9 0.056 1.9E-06 56.1 8.4 28 349-376 46-73 (324)
213 3b9p_A CG5977-PA, isoform A; A 94.8 0.055 1.9E-06 55.3 8.0 26 351-376 54-79 (297)
214 2jeo_A Uridine-cytidine kinase 94.8 0.022 7.4E-07 57.3 4.8 29 350-378 24-52 (245)
215 3b9q_A Chloroplast SRP recepto 94.8 0.019 6.6E-07 60.2 4.5 38 349-386 98-135 (302)
216 3p32_A Probable GTPase RV1496/ 94.8 0.026 8.9E-07 60.3 5.5 40 349-388 77-116 (355)
217 1um8_A ATP-dependent CLP prote 94.8 0.029 1E-06 59.8 6.0 26 351-376 72-97 (376)
218 1sxj_C Activator 1 40 kDa subu 94.7 0.054 1.8E-06 56.9 7.5 24 354-377 49-72 (340)
219 2og2_A Putative signal recogni 94.6 0.022 7.5E-07 61.4 4.5 38 349-386 155-192 (359)
220 2zr9_A Protein RECA, recombina 94.6 0.11 3.9E-06 55.5 9.9 38 350-387 60-97 (349)
221 4b4t_J 26S protease regulatory 94.6 0.054 1.8E-06 59.3 7.5 28 351-378 182-209 (405)
222 3czp_A Putative polyphosphate 94.6 0.11 3.7E-06 58.4 10.1 110 349-484 41-170 (500)
223 1np6_A Molybdopterin-guanine d 94.5 0.03 1E-06 54.1 4.9 34 352-385 7-40 (174)
224 3hr8_A Protein RECA; alpha and 94.5 0.19 6.5E-06 54.0 11.6 38 350-387 60-97 (356)
225 3czq_A Putative polyphosphate 94.5 0.088 3E-06 55.5 8.5 36 350-385 85-120 (304)
226 2qby_A CDC6 homolog 1, cell di 94.4 0.11 3.8E-06 54.2 9.3 38 350-387 44-84 (386)
227 4b4t_L 26S protease subunit RP 94.4 0.065 2.2E-06 59.3 7.8 28 350-377 214-241 (437)
228 3rhf_A Putative polyphosphate 94.4 0.11 3.8E-06 54.3 9.1 110 349-484 73-202 (289)
229 2p65_A Hypothetical protein PF 94.4 0.019 6.4E-07 53.6 2.9 27 351-377 43-69 (187)
230 4fcw_A Chaperone protein CLPB; 94.4 0.034 1.2E-06 57.0 5.2 36 352-387 48-83 (311)
231 3vfd_A Spastin; ATPase, microt 94.4 0.11 3.9E-06 55.6 9.5 26 351-376 148-173 (389)
232 1xp8_A RECA protein, recombina 94.3 0.27 9.2E-06 53.0 12.3 37 351-387 74-110 (366)
233 1nd6_A Prostatic acid phosphat 94.3 0.089 3E-06 55.4 8.2 65 562-626 7-87 (354)
234 1lv7_A FTSH; alpha/beta domain 94.3 0.023 8E-07 57.0 3.6 25 352-376 46-70 (257)
235 4b4t_K 26S protease regulatory 94.3 0.074 2.5E-06 58.7 7.8 28 350-377 205-232 (428)
236 2ga8_A Hypothetical 39.9 kDa p 94.2 0.034 1.2E-06 59.9 4.8 28 351-378 24-51 (359)
237 4b4t_I 26S protease regulatory 94.1 0.078 2.7E-06 58.5 7.4 29 350-378 215-243 (437)
238 3pvs_A Replication-associated 94.1 0.079 2.7E-06 58.6 7.6 24 353-376 52-75 (447)
239 2qgz_A Helicase loader, putati 93.9 0.047 1.6E-06 57.2 5.2 40 351-390 152-192 (308)
240 2orw_A Thymidine kinase; TMTK, 93.9 0.044 1.5E-06 53.1 4.5 35 351-385 3-37 (184)
241 1d2n_A N-ethylmaleimide-sensit 93.9 0.043 1.5E-06 55.7 4.6 28 349-376 62-89 (272)
242 4b4t_H 26S protease regulatory 93.9 0.086 2.9E-06 58.6 7.4 29 350-378 242-270 (467)
243 3bgw_A DNAB-like replicative h 93.9 0.51 1.8E-05 52.0 13.6 38 350-387 196-233 (444)
244 1g41_A Heat shock protein HSLU 93.9 0.098 3.3E-06 57.9 7.8 27 351-377 50-76 (444)
245 3aez_A Pantothenate kinase; tr 93.9 0.039 1.3E-06 58.1 4.4 29 349-377 88-116 (312)
246 2r8r_A Sensor protein; KDPD, P 93.8 0.064 2.2E-06 54.3 5.6 40 349-388 4-43 (228)
247 2w0m_A SSO2452; RECA, SSPF, un 93.7 0.055 1.9E-06 52.5 4.9 37 351-387 23-59 (235)
248 3n70_A Transport activator; si 93.7 0.034 1.2E-06 51.2 3.2 30 354-383 27-56 (145)
249 2r6a_A DNAB helicase, replicat 93.7 0.31 1.1E-05 53.6 11.5 38 350-387 202-240 (454)
250 3ntl_A Acid glucose-1-phosphat 93.7 0.18 6.1E-06 55.1 9.3 66 561-626 10-100 (398)
251 3cf0_A Transitional endoplasmi 93.6 0.032 1.1E-06 57.9 3.2 27 350-376 48-74 (301)
252 3pfi_A Holliday junction ATP-d 93.6 0.19 6.5E-06 52.3 9.1 24 353-376 57-80 (338)
253 2z43_A DNA repair and recombin 93.6 0.17 5.8E-06 53.1 8.7 26 350-375 106-131 (324)
254 1lvg_A Guanylate kinase, GMP k 93.6 0.033 1.1E-06 54.2 3.0 26 351-376 4-29 (198)
255 1ye8_A Protein THEP1, hypothet 93.6 0.043 1.5E-06 52.9 3.7 24 353-376 2-25 (178)
256 2r2a_A Uncharacterized protein 93.5 0.05 1.7E-06 53.7 4.1 26 350-375 4-29 (199)
257 3czp_A Putative polyphosphate 93.5 0.17 5.8E-06 56.9 8.9 110 349-484 298-427 (500)
258 1z0n_A 5'-AMP-activated protei 93.4 0.12 4.1E-06 45.2 5.9 53 30-95 10-62 (96)
259 2x8a_A Nuclear valosin-contain 93.3 0.038 1.3E-06 56.9 3.0 23 354-376 47-69 (274)
260 1ixz_A ATP-dependent metallopr 93.2 0.041 1.4E-06 55.2 3.1 23 354-376 52-74 (254)
261 2bjv_A PSP operon transcriptio 93.2 0.05 1.7E-06 54.9 3.7 36 353-388 31-66 (265)
262 2r62_A Cell division protease 93.2 0.029 9.8E-07 56.6 1.8 24 354-377 47-70 (268)
263 3hws_A ATP-dependent CLP prote 93.1 0.035 1.2E-06 59.0 2.5 34 351-387 51-84 (363)
264 2dr3_A UPF0273 protein PH0284; 93.1 0.074 2.5E-06 52.3 4.8 38 350-387 22-59 (247)
265 4dzz_A Plasmid partitioning pr 93.1 0.58 2E-05 44.6 11.0 38 351-388 2-39 (206)
266 1v5w_A DMC1, meiotic recombina 93.1 0.34 1.2E-05 51.4 10.2 25 350-374 121-145 (343)
267 2wsm_A Hydrogenase expression/ 93.1 0.084 2.9E-06 51.2 5.1 28 350-377 29-56 (221)
268 1dkq_A Phytase; histidine acid 93.1 0.16 5.4E-06 55.3 7.8 66 561-626 11-100 (410)
269 2dyk_A GTP-binding protein; GT 93.1 0.021 7.1E-07 52.0 0.6 22 353-374 3-24 (161)
270 3lda_A DNA repair protein RAD5 93.1 0.27 9.4E-06 53.6 9.6 25 350-374 177-201 (400)
271 1q57_A DNA primase/helicase; d 93.1 0.5 1.7E-05 52.5 11.9 38 350-387 241-279 (503)
272 2b8t_A Thymidine kinase; deoxy 93.1 0.09 3.1E-06 52.9 5.3 38 349-386 10-47 (223)
273 2www_A Methylmalonic aciduria 92.9 0.1 3.5E-06 55.6 5.9 38 349-386 72-109 (349)
274 1in4_A RUVB, holliday junction 92.9 0.052 1.8E-06 57.3 3.5 25 352-376 52-76 (334)
275 3it3_A Acid phosphatase; HAP, 92.9 0.23 8E-06 52.7 8.5 66 561-626 11-92 (342)
276 2ce7_A Cell division protein F 92.7 0.18 6.1E-06 56.3 7.6 32 353-387 51-82 (476)
277 2qmh_A HPR kinase/phosphorylas 92.7 0.042 1.4E-06 54.8 2.2 27 350-376 33-59 (205)
278 1tue_A Replication protein E1; 92.7 0.049 1.7E-06 54.5 2.7 26 351-376 58-83 (212)
279 1dek_A Deoxynucleoside monopho 92.6 0.057 2E-06 55.0 3.2 25 352-376 2-26 (241)
280 3uk6_A RUVB-like 2; hexameric 92.6 0.06 2.1E-06 56.6 3.5 26 351-376 70-95 (368)
281 2p67_A LAO/AO transport system 92.6 0.1 3.5E-06 55.3 5.3 38 350-387 55-92 (341)
282 1w5s_A Origin recognition comp 92.5 0.82 2.8E-05 48.3 12.2 28 350-377 49-78 (412)
283 1iy2_A ATP-dependent metallopr 92.5 0.058 2E-06 55.0 3.1 23 354-376 76-98 (278)
284 2f1r_A Molybdopterin-guanine d 92.5 0.061 2.1E-06 51.7 3.0 31 353-383 4-34 (171)
285 3zq6_A Putative arsenical pump 92.4 0.15 5E-06 53.7 6.1 39 351-389 14-52 (324)
286 2gza_A Type IV secretion syste 92.4 0.14 4.8E-06 54.8 6.0 138 351-498 175-314 (361)
287 2c9o_A RUVB-like 1; hexameric 92.4 0.064 2.2E-06 59.1 3.4 27 351-377 63-89 (456)
288 1svi_A GTP-binding protein YSX 92.3 0.26 9E-06 46.3 7.1 24 350-373 22-45 (195)
289 2ehv_A Hypothetical protein PH 92.3 0.11 3.8E-06 51.1 4.7 37 350-386 29-66 (251)
290 1cr0_A DNA primase/helicase; R 92.2 0.12 4.2E-06 53.0 5.1 38 350-387 34-72 (296)
291 1xx6_A Thymidine kinase; NESG, 92.2 0.16 5.4E-06 49.8 5.6 37 350-386 7-43 (191)
292 3ug7_A Arsenical pump-driving 92.1 0.14 4.9E-06 54.5 5.6 41 349-389 24-64 (349)
293 1znw_A Guanylate kinase, GMP k 92.1 0.073 2.5E-06 51.8 3.1 27 350-376 19-45 (207)
294 1z6g_A Guanylate kinase; struc 92.1 0.061 2.1E-06 53.2 2.5 25 351-375 23-47 (218)
295 3cf2_A TER ATPase, transitiona 92.0 0.11 3.7E-06 61.6 5.0 36 349-387 236-271 (806)
296 2vp4_A Deoxynucleoside kinase; 92.0 0.063 2.2E-06 53.3 2.5 26 349-374 18-43 (230)
297 3pxg_A Negative regulator of g 92.0 0.078 2.7E-06 58.8 3.5 25 353-377 203-227 (468)
298 4a74_A DNA repair and recombin 92.0 0.092 3.2E-06 51.0 3.6 26 350-375 24-49 (231)
299 1sxj_D Activator 1 41 kDa subu 91.8 0.091 3.1E-06 54.7 3.7 23 354-376 61-83 (353)
300 2xtp_A GTPase IMAP family memb 91.8 0.3 1E-05 48.9 7.4 24 350-373 21-44 (260)
301 4dcu_A GTP-binding protein ENG 91.8 0.087 3E-06 58.1 3.6 23 351-373 23-45 (456)
302 1svm_A Large T antigen; AAA+ f 91.6 0.1 3.4E-06 56.6 3.8 27 350-376 168-194 (377)
303 1u0j_A DNA replication protein 91.6 0.13 4.3E-06 53.3 4.3 30 349-378 102-131 (267)
304 1n0w_A DNA repair protein RAD5 91.5 0.094 3.2E-06 51.5 3.2 25 350-374 23-47 (243)
305 1r6b_X CLPA protein; AAA+, N-t 91.5 0.37 1.3E-05 56.3 8.7 35 353-390 490-524 (758)
306 2hf9_A Probable hydrogenase ni 91.4 0.14 4.7E-06 49.8 4.3 27 350-376 37-63 (226)
307 2wnh_A 3-phytase; histidine ac 91.4 0.28 9.5E-06 53.5 7.1 66 561-626 19-108 (418)
308 2woo_A ATPase GET3; tail-ancho 91.4 0.17 5.7E-06 53.5 5.1 40 350-389 18-57 (329)
309 3hu3_A Transitional endoplasmi 91.3 0.43 1.5E-05 53.3 8.6 37 351-390 238-274 (489)
310 1hqc_A RUVB; extended AAA-ATPa 91.2 0.089 3E-06 54.2 2.8 25 352-376 39-63 (324)
311 2qm8_A GTPase/ATPase; G protei 91.2 0.19 6.7E-06 53.2 5.4 37 350-386 54-90 (337)
312 2i3b_A HCR-ntpase, human cance 91.2 0.11 3.9E-06 50.6 3.3 28 353-380 3-30 (189)
313 1g8p_A Magnesium-chelatase 38 91.1 0.065 2.2E-06 55.8 1.5 23 354-376 48-70 (350)
314 2wjg_A FEOB, ferrous iron tran 91.1 0.17 5.8E-06 47.3 4.3 24 350-373 6-29 (188)
315 2r44_A Uncharacterized protein 91.0 0.072 2.5E-06 55.5 1.8 24 353-376 48-71 (331)
316 3end_A Light-independent proto 90.9 0.2 6.9E-06 51.6 5.1 39 350-388 40-78 (307)
317 3nme_A Ptpkis1 protein, SEX4 g 90.9 0.21 7.3E-06 52.1 5.3 72 27-115 166-238 (294)
318 1jr3_A DNA polymerase III subu 90.9 0.14 4.6E-06 53.8 3.8 27 351-377 38-64 (373)
319 2eyu_A Twitching motility prot 90.8 0.18 6E-06 51.7 4.5 29 350-378 24-52 (261)
320 3iqw_A Tail-anchored protein t 90.8 0.2 6.9E-06 53.2 5.1 39 350-388 15-53 (334)
321 2hjg_A GTP-binding protein ENG 90.7 0.43 1.5E-05 52.1 7.8 40 433-472 84-124 (436)
322 1sxj_A Activator 1 95 kDa subu 90.7 0.11 3.9E-06 58.1 3.2 26 351-376 77-102 (516)
323 3co5_A Putative two-component 90.7 0.074 2.5E-06 48.9 1.4 23 354-376 30-52 (143)
324 3pxi_A Negative regulator of g 90.6 0.21 7E-06 58.6 5.4 41 350-390 519-560 (758)
325 3m6a_A ATP-dependent protease 90.6 0.14 4.7E-06 58.0 3.7 28 350-377 107-134 (543)
326 2v9p_A Replication protein E1; 90.6 0.15 5E-06 53.8 3.7 26 350-375 125-150 (305)
327 2zan_A Vacuolar protein sortin 90.4 0.11 3.9E-06 57.1 2.8 25 351-375 167-191 (444)
328 1htw_A HI0065; nucleotide-bind 90.4 0.18 6.1E-06 47.8 3.8 26 350-375 32-57 (158)
329 3jvv_A Twitching mobility prot 90.4 0.38 1.3E-05 51.6 6.8 114 352-479 124-240 (356)
330 3kjh_A CO dehydrogenase/acetyl 90.3 0.15 5E-06 50.2 3.2 35 354-388 3-37 (254)
331 2chq_A Replication factor C sm 90.1 0.16 5.6E-06 51.7 3.5 23 354-376 41-63 (319)
332 2zts_A Putative uncharacterize 90.0 0.26 9E-06 48.3 4.9 36 350-385 29-65 (251)
333 1z0f_A RAB14, member RAS oncog 90.0 0.21 7.3E-06 45.8 3.9 26 349-374 13-38 (179)
334 3bc1_A RAS-related protein RAB 90.0 0.22 7.7E-06 46.3 4.1 25 349-373 9-33 (195)
335 1nrj_B SR-beta, signal recogni 90.0 0.18 6.3E-06 48.6 3.6 26 349-374 10-35 (218)
336 3ea0_A ATPase, para family; al 89.9 0.31 1.1E-05 48.0 5.3 39 350-388 4-43 (245)
337 1g3q_A MIND ATPase, cell divis 89.9 0.27 9.2E-06 48.2 4.8 38 351-388 3-40 (237)
338 3k9g_A PF-32 protein; ssgcid, 89.7 0.22 7.6E-06 50.1 4.1 39 350-389 27-65 (267)
339 1c9k_A COBU, adenosylcobinamid 89.7 0.15 5.1E-06 49.7 2.6 22 353-374 1-22 (180)
340 1ojl_A Transcriptional regulat 89.7 0.19 6.5E-06 52.3 3.7 36 352-387 26-61 (304)
341 2ph1_A Nucleotide-binding prot 89.6 0.25 8.6E-06 49.8 4.4 40 350-389 18-57 (262)
342 1nlf_A Regulatory protein REPA 89.6 0.2 7E-06 51.0 3.8 27 350-376 29-55 (279)
343 2gj8_A MNME, tRNA modification 89.5 0.21 7.2E-06 46.7 3.5 25 350-374 3-27 (172)
344 3bfv_A CAPA1, CAPB2, membrane 89.5 0.53 1.8E-05 48.2 6.8 39 350-388 82-120 (271)
345 3tqf_A HPR(Ser) kinase; transf 89.4 0.17 5.7E-06 49.4 2.8 24 351-374 16-39 (181)
346 2woj_A ATPase GET3; tail-ancho 89.4 0.29 1E-05 52.3 5.0 40 350-389 17-58 (354)
347 2afh_E Nitrogenase iron protei 89.4 0.31 1.1E-05 49.7 5.0 36 353-388 4-39 (289)
348 1upt_A ARL1, ADP-ribosylation 89.4 0.29 9.8E-06 44.7 4.3 24 350-373 6-29 (171)
349 2wji_A Ferrous iron transport 89.3 0.23 7.9E-06 45.9 3.6 23 351-373 3-25 (165)
350 2dhr_A FTSH; AAA+ protein, hex 89.3 0.25 8.5E-06 55.5 4.4 23 354-376 67-89 (499)
351 1cp2_A CP2, nitrogenase iron p 89.3 0.33 1.1E-05 48.7 5.0 36 353-388 3-38 (269)
352 3la6_A Tyrosine-protein kinase 89.3 0.57 2E-05 48.5 6.9 42 348-389 90-131 (286)
353 1z2a_A RAS-related protein RAB 89.2 0.26 8.7E-06 44.8 3.8 25 350-374 4-28 (168)
354 2ce2_X GTPase HRAS; signaling 89.2 0.25 8.7E-06 44.4 3.7 24 351-374 3-26 (166)
355 3cmw_A Protein RECA, recombina 89.1 0.95 3.3E-05 57.7 9.9 39 350-388 731-769 (1706)
356 3q9l_A Septum site-determining 89.1 0.33 1.1E-05 48.2 4.8 39 351-389 3-41 (260)
357 3cwq_A Para family chromosome 89.0 0.37 1.3E-05 47.1 5.0 36 352-388 2-37 (209)
358 2ewv_A Twitching motility prot 89.0 0.27 9.2E-06 52.9 4.3 29 350-378 135-163 (372)
359 2j9r_A Thymidine kinase; TK1, 89.0 0.52 1.8E-05 47.1 6.1 38 349-386 26-63 (214)
360 1hyq_A MIND, cell division inh 89.0 0.39 1.3E-05 48.0 5.2 39 351-389 3-41 (263)
361 1ypw_A Transitional endoplasmi 88.9 0.87 3E-05 53.9 9.0 27 350-376 237-263 (806)
362 3kkq_A RAS-related protein M-R 88.9 0.3 1E-05 45.4 4.0 26 349-374 16-41 (183)
363 3cmu_A Protein RECA, recombina 88.9 1.8 6.3E-05 56.0 12.3 49 340-388 1415-1464(2050)
364 3iev_A GTP-binding protein ERA 88.9 1.9 6.4E-05 44.8 10.5 24 350-373 9-32 (308)
365 1kao_A RAP2A; GTP-binding prot 88.8 0.28 9.7E-06 44.2 3.8 23 351-373 3-25 (167)
366 1oix_A RAS-related protein RAB 88.8 0.29 1E-05 46.6 4.0 25 350-374 28-52 (191)
367 2lkc_A Translation initiation 88.8 0.29 9.8E-06 45.1 3.8 24 350-373 7-30 (178)
368 4aee_A Alpha amylase, catalyti 88.7 0.57 2E-05 54.5 7.1 60 27-95 14-73 (696)
369 3io3_A DEHA2D07832P; chaperone 88.7 0.35 1.2E-05 51.7 4.9 39 350-388 17-57 (348)
370 1m7b_A RND3/RHOE small GTP-bin 88.6 0.29 9.8E-06 45.9 3.7 25 350-374 6-30 (184)
371 1ihu_A Arsenical pump-driving 88.5 0.34 1.2E-05 55.0 5.0 39 350-388 7-45 (589)
372 1ky3_A GTP-binding protein YPT 88.4 0.31 1E-05 44.9 3.8 25 350-374 7-31 (182)
373 3con_A GTPase NRAS; structural 88.4 0.3 1E-05 45.8 3.7 25 350-374 20-44 (190)
374 2erx_A GTP-binding protein DI- 88.4 0.3 1E-05 44.4 3.6 23 351-373 3-25 (172)
375 2ged_A SR-beta, signal recogni 88.3 0.29 9.8E-06 46.0 3.6 26 349-374 46-71 (193)
376 1z06_A RAS-related protein RAB 88.2 0.32 1.1E-05 45.8 3.8 24 350-373 19-42 (189)
377 2nzj_A GTP-binding protein REM 88.2 0.33 1.1E-05 44.5 3.7 24 350-373 3-26 (175)
378 3cio_A ETK, tyrosine-protein k 88.1 0.55 1.9E-05 48.8 5.8 37 352-388 105-142 (299)
379 1wf3_A GTP-binding protein; GT 88.1 1.2 4.1E-05 46.3 8.4 22 352-373 8-29 (301)
380 1a5t_A Delta prime, HOLB; zinc 88.1 0.31 1.1E-05 51.2 4.0 28 350-377 23-50 (334)
381 3upu_A ATP-dependent DNA helic 88.1 0.4 1.4E-05 52.8 5.0 28 353-380 47-74 (459)
382 1u8z_A RAS-related protein RAL 88.0 0.34 1.2E-05 43.7 3.8 23 351-373 4-26 (168)
383 1p6x_A Thymidine kinase; P-loo 88.0 0.17 5.9E-06 53.9 2.0 29 350-378 6-34 (334)
384 1pui_A ENGB, probable GTP-bind 87.9 0.19 6.4E-06 48.1 2.0 25 350-374 25-49 (210)
385 2fn4_A P23, RAS-related protei 87.9 0.4 1.4E-05 44.0 4.2 25 350-374 8-32 (181)
386 3cf2_A TER ATPase, transitiona 87.9 0.55 1.9E-05 55.7 6.3 27 351-377 511-537 (806)
387 3e1s_A Exodeoxyribonuclease V, 87.8 0.39 1.3E-05 54.7 4.9 34 352-385 205-238 (574)
388 4dsu_A GTPase KRAS, isoform 2B 87.8 0.34 1.2E-05 45.0 3.7 25 350-374 3-27 (189)
389 2hxs_A RAB-26, RAS-related pro 87.7 0.41 1.4E-05 44.0 4.2 24 350-373 5-28 (178)
390 1c1y_A RAS-related protein RAP 87.7 0.37 1.3E-05 43.7 3.8 23 351-373 3-25 (167)
391 3q85_A GTP-binding protein REM 87.7 0.29 9.8E-06 44.7 3.0 21 352-372 3-23 (169)
392 2oze_A ORF delta'; para, walke 87.6 0.45 1.5E-05 48.6 4.8 40 351-390 35-76 (298)
393 3q72_A GTP-binding protein RAD 87.6 0.27 9.4E-06 44.7 2.8 20 353-372 4-23 (166)
394 1qwo_A Phytase; alpha barrel, 87.4 1.1 3.8E-05 48.9 8.0 47 580-626 100-149 (442)
395 3pxi_A Negative regulator of g 87.2 0.29 1E-05 57.3 3.4 24 353-376 203-226 (758)
396 2h17_A ADP-ribosylation factor 87.1 0.35 1.2E-05 45.2 3.3 25 349-373 19-43 (181)
397 3clv_A RAB5 protein, putative; 87.1 0.54 1.8E-05 43.8 4.6 25 350-374 6-30 (208)
398 2f9l_A RAB11B, member RAS onco 87.1 0.38 1.3E-05 45.8 3.6 24 351-374 5-28 (199)
399 3tif_A Uncharacterized ABC tra 87.0 0.29 1E-05 49.1 2.9 25 351-375 31-55 (235)
400 3cmu_A Protein RECA, recombina 87.0 2.8 9.4E-05 54.4 12.2 39 350-388 1080-1118(2050)
401 1nij_A Hypothetical protein YJ 87.0 0.3 1E-05 51.2 3.1 23 352-374 5-27 (318)
402 4ag6_A VIRB4 ATPase, type IV s 87.0 0.48 1.6E-05 50.7 4.7 39 354-392 38-77 (392)
403 1ek0_A Protein (GTP-binding pr 86.9 0.4 1.4E-05 43.4 3.5 24 351-374 3-26 (170)
404 3b85_A Phosphate starvation-in 86.9 0.32 1.1E-05 48.1 3.0 24 351-374 22-45 (208)
405 1r2q_A RAS-related protein RAB 86.9 0.4 1.4E-05 43.4 3.5 24 350-373 5-28 (170)
406 3tw8_B RAS-related protein RAB 86.9 0.39 1.3E-05 44.1 3.5 24 350-373 8-31 (181)
407 3fkq_A NTRC-like two-domain pr 86.9 0.56 1.9E-05 50.1 5.2 39 350-388 143-181 (373)
408 2zej_A Dardarin, leucine-rich 86.9 0.31 1.1E-05 45.8 2.9 22 352-373 3-24 (184)
409 1z08_A RAS-related protein RAB 86.8 0.43 1.5E-05 43.5 3.7 25 350-374 5-29 (170)
410 1lw7_A Transcriptional regulat 86.8 0.3 1E-05 52.0 3.0 26 351-376 170-195 (365)
411 2pcj_A ABC transporter, lipopr 86.8 0.29 9.9E-06 48.7 2.7 25 351-375 30-54 (224)
412 3ihw_A Centg3; RAS, centaurin, 86.8 0.49 1.7E-05 44.7 4.2 26 349-374 18-43 (184)
413 2cbz_A Multidrug resistance-as 86.7 0.31 1.1E-05 49.0 2.9 25 351-375 31-55 (237)
414 2gf0_A GTP-binding protein DI- 86.7 0.49 1.7E-05 44.5 4.1 24 350-373 7-30 (199)
415 3nbx_X ATPase RAVA; AAA+ ATPas 86.7 0.22 7.5E-06 55.9 1.9 24 353-376 43-66 (500)
416 1wms_A RAB-9, RAB9, RAS-relate 86.6 0.43 1.5E-05 43.8 3.6 24 350-373 6-29 (177)
417 1ihu_A Arsenical pump-driving 86.4 0.64 2.2E-05 52.7 5.6 39 350-388 326-364 (589)
418 3ice_A Transcription terminati 86.4 2 6.8E-05 47.0 9.1 32 353-384 176-207 (422)
419 2fna_A Conserved hypothetical 86.4 0.42 1.4E-05 49.2 3.8 24 353-376 32-55 (357)
420 2g6b_A RAS-related protein RAB 86.4 0.45 1.5E-05 43.8 3.6 24 350-373 9-32 (180)
421 1wcv_1 SOJ, segregation protei 86.4 0.37 1.3E-05 48.4 3.2 39 351-389 7-45 (257)
422 1z0j_A RAB-22, RAS-related pro 86.4 0.45 1.5E-05 43.2 3.5 25 350-374 5-29 (170)
423 2gno_A DNA polymerase III, gam 86.3 2.1 7.3E-05 44.6 9.1 26 351-376 18-43 (305)
424 1g16_A RAS-related protein SEC 86.3 0.48 1.6E-05 43.0 3.7 23 351-373 3-25 (170)
425 1zj6_A ADP-ribosylation factor 86.3 0.5 1.7E-05 44.3 3.9 24 350-373 15-38 (187)
426 3th5_A RAS-related C3 botulinu 86.3 0.14 4.8E-06 49.0 0.0 24 350-373 29-52 (204)
427 1mv5_A LMRA, multidrug resista 86.2 0.39 1.3E-05 48.4 3.3 26 350-375 27-52 (243)
428 2onk_A Molybdate/tungstate ABC 86.2 0.39 1.3E-05 48.5 3.3 24 352-375 25-48 (240)
429 1of1_A Thymidine kinase; trans 86.2 0.32 1.1E-05 52.7 2.8 31 349-379 47-77 (376)
430 1moz_A ARL1, ADP-ribosylation 86.2 0.38 1.3E-05 44.6 3.0 24 349-372 16-39 (183)
431 1pzn_A RAD51, DNA repair and r 86.1 0.42 1.4E-05 50.9 3.6 26 350-375 130-155 (349)
432 1r8s_A ADP-ribosylation factor 86.0 0.43 1.5E-05 43.2 3.2 21 354-374 3-23 (164)
433 1mky_A Probable GTP-binding pr 85.9 0.81 2.8E-05 50.0 5.9 22 353-374 3-24 (439)
434 1vg8_A RAS-related protein RAB 85.9 0.5 1.7E-05 44.8 3.8 25 350-374 7-31 (207)
435 1fzq_A ADP-ribosylation factor 85.8 0.51 1.7E-05 44.3 3.7 24 350-373 15-38 (181)
436 2y8e_A RAB-protein 6, GH09086P 85.8 0.45 1.6E-05 43.6 3.3 24 350-373 13-36 (179)
437 3t1o_A Gliding protein MGLA; G 85.8 0.43 1.5E-05 44.5 3.2 26 350-375 13-38 (198)
438 1mh1_A RAC1; GTP-binding, GTPa 85.7 0.44 1.5E-05 44.0 3.2 24 350-373 4-27 (186)
439 2a9k_A RAS-related protein RAL 85.7 0.51 1.7E-05 43.6 3.6 24 350-373 17-40 (187)
440 2efe_B Small GTP-binding prote 85.7 0.52 1.8E-05 43.4 3.7 24 350-373 11-34 (181)
441 4g1u_C Hemin import ATP-bindin 85.7 0.36 1.2E-05 49.5 2.7 25 351-375 37-61 (266)
442 3lxw_A GTPase IMAP family memb 85.7 0.47 1.6E-05 47.6 3.6 24 350-373 20-43 (247)
443 2d2e_A SUFC protein; ABC-ATPas 85.6 0.43 1.5E-05 48.3 3.3 24 351-374 29-52 (250)
444 1byi_A Dethiobiotin synthase; 85.6 0.81 2.8E-05 44.4 5.2 35 352-386 3-37 (224)
445 3cmw_A Protein RECA, recombina 85.6 3.1 0.00011 53.2 11.5 39 350-388 382-420 (1706)
446 3kta_A Chromosome segregation 85.6 0.45 1.5E-05 44.7 3.2 24 353-376 28-51 (182)
447 2a5y_B CED-4; apoptosis; HET: 85.6 0.5 1.7E-05 53.2 4.1 24 350-373 151-174 (549)
448 1qvr_A CLPB protein; coiled co 85.6 0.41 1.4E-05 57.0 3.5 39 352-390 589-627 (854)
449 3tvt_A Disks large 1 tumor sup 85.6 2.4 8.1E-05 44.2 9.0 44 433-482 188-231 (292)
450 2bme_A RAB4A, RAS-related prot 85.5 0.63 2.2E-05 43.2 4.2 25 350-374 9-33 (186)
451 3lxx_A GTPase IMAP family memb 85.5 0.49 1.7E-05 46.7 3.6 25 349-373 27-51 (239)
452 3cbq_A GTP-binding protein REM 85.5 0.41 1.4E-05 45.8 2.9 23 350-372 22-44 (195)
453 2cxx_A Probable GTP-binding pr 85.4 0.43 1.5E-05 44.4 3.0 20 354-373 4-23 (190)
454 1mky_A Probable GTP-binding pr 85.4 1.3 4.6E-05 48.2 7.4 25 350-374 179-203 (439)
455 2oil_A CATX-8, RAS-related pro 85.4 0.53 1.8E-05 44.2 3.6 26 349-374 23-48 (193)
456 3nh6_A ATP-binding cassette SU 85.4 0.16 5.4E-06 53.5 -0.1 25 351-375 80-104 (306)
457 1b0u_A Histidine permease; ABC 85.4 0.39 1.3E-05 49.0 2.9 25 351-375 32-56 (262)
458 3t5g_A GTP-binding protein RHE 85.4 0.46 1.6E-05 44.0 3.1 24 350-373 5-28 (181)
459 2ff7_A Alpha-hemolysin translo 85.3 0.39 1.3E-05 48.6 2.8 25 351-375 35-59 (247)
460 3oes_A GTPase rhebl1; small GT 85.3 0.55 1.9E-05 44.7 3.7 25 350-374 23-47 (201)
461 1p9r_A General secretion pathw 85.3 0.71 2.4E-05 50.6 5.0 29 350-378 166-194 (418)
462 1zd9_A ADP-ribosylation factor 85.2 0.58 2E-05 44.0 3.8 25 349-373 20-44 (188)
463 3pqc_A Probable GTP-binding pr 85.2 0.53 1.8E-05 43.9 3.5 24 351-374 23-46 (195)
464 1ksh_A ARF-like protein 2; sma 85.2 0.54 1.8E-05 43.8 3.5 24 350-373 17-40 (186)
465 2xj4_A MIPZ; replication, cell 85.1 0.6 2E-05 47.8 4.1 38 352-389 6-43 (286)
466 2il1_A RAB12; G-protein, GDP, 85.1 0.55 1.9E-05 44.4 3.6 25 349-373 24-48 (192)
467 2fh5_B SR-beta, signal recogni 85.1 0.49 1.7E-05 45.4 3.3 25 350-374 6-30 (214)
468 3k4q_A 3-phytase A; PHYA, 3-ph 85.0 1.5 5.2E-05 48.2 7.6 46 581-626 102-150 (444)
469 2zu0_C Probable ATP-dependent 85.0 0.49 1.7E-05 48.5 3.4 24 351-374 46-69 (267)
470 2qen_A Walker-type ATPase; unk 85.0 0.52 1.8E-05 48.4 3.6 25 352-376 32-56 (350)
471 2gf9_A RAS-related protein RAB 85.0 0.68 2.3E-05 43.4 4.1 25 350-374 21-45 (189)
472 2ghi_A Transport protein; mult 85.0 0.42 1.4E-05 48.8 2.9 25 351-375 46-70 (260)
473 3gfo_A Cobalt import ATP-bindi 85.0 0.41 1.4E-05 49.5 2.8 25 351-375 34-58 (275)
474 2ixe_A Antigen peptide transpo 84.9 0.42 1.4E-05 49.1 2.9 25 351-375 45-69 (271)
475 1ypw_A Transitional endoplasmi 84.9 0.27 9.3E-06 58.3 1.6 28 350-377 510-537 (806)
476 2olj_A Amino acid ABC transpor 84.9 0.43 1.5E-05 48.9 2.9 25 351-375 50-74 (263)
477 3tkl_A RAS-related protein RAB 84.8 0.68 2.3E-05 43.3 4.1 24 350-373 15-38 (196)
478 1ji0_A ABC transporter; ATP bi 84.8 0.42 1.4E-05 48.1 2.8 24 351-374 32-55 (240)
479 1x3s_A RAS-related protein RAB 84.8 0.58 2E-05 43.7 3.5 25 350-374 14-38 (195)
480 2a5j_A RAS-related protein RAB 84.8 0.59 2E-05 44.0 3.6 25 349-373 19-43 (191)
481 2i1q_A DNA repair and recombin 84.7 0.55 1.9E-05 48.9 3.7 25 350-374 97-121 (322)
482 1z6t_A APAF-1, apoptotic prote 84.7 0.8 2.7E-05 51.4 5.3 25 350-374 146-170 (591)
483 1g6h_A High-affinity branched- 84.7 0.43 1.5E-05 48.5 2.8 25 351-375 33-57 (257)
484 2bov_A RAla, RAS-related prote 84.7 0.69 2.4E-05 43.7 4.1 25 350-374 13-37 (206)
485 1zbd_A Rabphilin-3A; G protein 84.6 0.5 1.7E-05 44.8 3.0 23 351-373 8-30 (203)
486 2pze_A Cystic fibrosis transme 84.5 0.44 1.5E-05 47.6 2.7 25 351-375 34-58 (229)
487 1m2o_B GTP-binding protein SAR 84.5 0.54 1.8E-05 44.6 3.2 24 350-373 22-45 (190)
488 1e2k_A Thymidine kinase; trans 84.4 0.34 1.2E-05 51.6 1.9 30 350-379 3-32 (331)
489 1f6b_A SAR1; gtpases, N-termin 84.4 0.54 1.9E-05 45.0 3.2 23 350-372 24-46 (198)
490 3dz8_A RAS-related protein RAB 84.4 0.57 1.9E-05 44.1 3.3 25 350-374 22-46 (191)
491 3c5c_A RAS-like protein 12; GD 84.3 0.66 2.3E-05 43.8 3.8 25 350-374 20-44 (187)
492 2qu8_A Putative nucleolar GTP- 84.3 0.74 2.5E-05 45.0 4.2 25 349-373 27-51 (228)
493 1r6b_X CLPA protein; AAA+, N-t 84.3 0.6 2E-05 54.5 4.1 28 351-378 207-234 (758)
494 1kjw_A Postsynaptic density pr 84.3 1.3 4.5E-05 46.1 6.3 23 351-376 105-127 (295)
495 3k1j_A LON protease, ATP-depen 84.1 0.37 1.3E-05 55.0 2.2 25 353-377 62-86 (604)
496 2yz2_A Putative ABC transporte 84.1 0.49 1.7E-05 48.4 2.9 25 351-375 33-57 (266)
497 4bas_A ADP-ribosylation factor 84.0 0.62 2.1E-05 43.7 3.4 24 350-373 16-39 (199)
498 2atv_A RERG, RAS-like estrogen 83.9 0.72 2.5E-05 43.6 3.9 25 350-374 27-51 (196)
499 1vpl_A ABC transporter, ATP-bi 83.9 0.5 1.7E-05 48.2 2.9 25 351-375 41-65 (256)
500 1sgw_A Putative ABC transporte 83.9 0.41 1.4E-05 47.5 2.2 25 351-375 35-59 (214)
No 1
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=100.00 E-value=7.2e-62 Score=550.75 Aligned_cols=339 Identities=45% Similarity=0.817 Sum_probs=317.1
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
..|.+|+|+|+|||||||+|++|+++|+|.++++++|+.|++|+...+.....+||.+.+++.++.+++++..+++++..
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~ 112 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKS 112 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999887765556888888999999999999999999999
Q ss_pred HHh-cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHH
Q 005388 429 WMH-EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (699)
Q Consensus 429 ~L~-~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri 506 (699)
+|. +.|.+||+|+||.+++.|+.++++ .+.+++++||++.|++++++++|+.+++..+|+|.+. ++++++++|.+|+
T Consensus 113 ~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~-d~e~~~~~~~~Ri 191 (520)
T 2axn_A 113 YLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDC-NSAEAMDDFMKRI 191 (520)
T ss_dssp HHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTS-CHHHHHHHHHHHH
T ss_pred HHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccC-CHHHHHHHHHHHH
Confidence 985 569999999999999999999988 6678899999999999999999998887778999998 8999999999999
Q ss_pred HhhhhhccCCCCC------CceEEeecccCCcceeEEeccccCCCcceeeeecccCCCCcceEEecccccccccCCcccC
Q 005388 507 ANYEKVYEPVDEG------SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIGG 580 (699)
Q Consensus 507 ~~y~~~yEpl~e~------~yik~in~~~~~g~~~~~n~i~gyL~~rIvffLmN~~~~~~~I~LVRHGeS~~N~~~~~~G 580 (699)
+.|++.|||++++ +|||+||+ |+++++|+++|||+++|+|||||+|.++++||||||||+.+|..++++|
T Consensus 192 ~~y~~~Yepi~~ee~~~dl~yik~id~----g~~~~~~~~~g~l~~~~~~~l~n~~~~~~~i~LvRHGet~~n~~~~~~g 267 (520)
T 2axn_A 192 SCYEASYQPLDPDKCDRDLSLIKVIDV----GRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGENEHNLQGRIGG 267 (520)
T ss_dssp HHHHTTCCCCCTTTTTTTSEEEEEETT----TTEEEEECCCSHHHHHHHHHHTTCCCSCCCEEEEECCCBHHHHHTBCSS
T ss_pred HhhhhhhcccChhhcccCcceEEEEcC----ccccccCCCCCCcchhhhhhhcccCCCceeEEEeecceeccccCCccCC
Confidence 9999999999832 89999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhhcCCCccccccccccccCcCCCCCHHHHHHhCHHH
Q 005388 581 DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRALDEINAGVCDGMTYEEIKKNMPEE 660 (699)
Q Consensus 581 D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i~g~~v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~ 660 (699)
|.+||+.|++||+.++++|... ...++.|||||+.||+|||+++ +.++.+++.|+|+++|.|+|++++++.++||+.
T Consensus 268 D~pLt~~G~~qA~~l~~~L~~~--~~~~~~v~sSpl~Ra~qTA~~i-~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~ 344 (520)
T 2axn_A 268 DSGLSSRGKKFASALSKFVEEQ--NLKDLRVWTSQLKSTIQTAEAL-RLPYEQWKALNEIDAGVCEELTYEEIRDTYPEE 344 (520)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHH--CCSCCEEEECSSHHHHHHHHTT-TSCEEECGGGSCCCCGGGTTCBHHHHHHHCHHH
T ss_pred CcccCHHHHHHHHHHHHHHHhc--CCCCCeEEeCCcHHHHHHHHHh-CCCcEEccccccccCCcccCCcHHHHHHHCHHH
Confidence 9999999999999999999876 5567899999999999999998 788899999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 005388 661 YEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWC 695 (699)
Q Consensus 661 ~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~ 695 (699)
+..|..+++.+++|+|||+.++.+|+.++|++|..
T Consensus 345 ~~~~~~d~~~~~~p~gEs~~~~~~Rv~~~l~~l~~ 379 (520)
T 2axn_A 345 YALREQDKYYYRYPTGESYQDLVQRLEPVIMELER 379 (520)
T ss_dssp HHHHHHCTTTCCCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999854
No 2
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=100.00 E-value=8.1e-60 Score=527.31 Aligned_cols=339 Identities=44% Similarity=0.777 Sum_probs=314.0
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
.+|++|+|+|+|||||||+|++|+++|+|.+++++.|+.|++|+...+......+|+..+++.++.+...+..++.++..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999777654556788888888888888888888888888
Q ss_pred HHh-cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHH
Q 005388 429 WMH-EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (699)
Q Consensus 429 ~L~-~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri 506 (699)
++. .+|.++|+|++|.++++|+.+.+. .+.++.++|+++.|++++++.+|+.+++..+|++.+. +++++.++|.+|+
T Consensus 117 ~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~~-~~e~~~~~~~~R~ 195 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNR-DSDEATEDFMRRI 195 (469)
T ss_dssp HHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTSTTTTTS-CHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCCcccCC-CHHHHHHHHHHHH
Confidence 885 458899999999999999999887 6668899999999999999999998877778999998 8999999999999
Q ss_pred HhhhhhccCCCCC-----CceEEeecccCCcceeEEeccccCCCcceeeeecccCCCCcceEEecccccccccCCcccCC
Q 005388 507 ANYEKVYEPVDEG-----SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIGGD 581 (699)
Q Consensus 507 ~~y~~~yEpl~e~-----~yik~in~~~~~g~~~~~n~i~gyL~~rIvffLmN~~~~~~~I~LVRHGeS~~N~~~~~~GD 581 (699)
..|++.|||++++ +|||+||+ |+++++|+++|||+++|+|||||+|.++++||||||||+.+|..++++||
T Consensus 196 ~~y~~~ye~l~~~~~~~~~~ik~~d~----~~~~~~~~~~g~~~~~~~~~l~n~~~~~~~i~LvRHGet~~n~~~~~~gD 271 (469)
T 1bif_A 196 ECYENSYESLDEEQDRDLSYIKIMDV----GQSYVVNRVADHIQSRIVYYLMNIHVTPRSIYLCRHGESELNLKGRIGGD 271 (469)
T ss_dssp HHHHTTCCCCCTTTTTTSCEEEEETT----TTEEEEECCCSHHHHHHHHHHTTCCCCCCCEEEEECSCBHHHHHTBCSSC
T ss_pred HHhccEeEECCccccCCcceEEEEcC----ccceeccCccccchhhHHHHHhccCCCCceEEEeccceeccccCCeeCCC
Confidence 9999999999852 99999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhhcCCCccccccccccccCcCCCCCHHHHHHhCHHHH
Q 005388 582 TILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEY 661 (699)
Q Consensus 582 ~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i~g~~v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~~ 661 (699)
.|||+.|++||+.++++|... +..++.|||||+.||+|||+++ +.++..++.|+|+++|.|+|++++++.+.||+.+
T Consensus 272 ~~Lt~~G~~qA~~l~~~l~~~--~~~~~~v~sSpl~Ra~qTA~~l-~~~~~~~~~L~E~~~G~~eg~~~~e~~~~~p~~~ 348 (469)
T 1bif_A 272 PGLSPRGREFSKHLAQFISDQ--NIKDLKVFTSQMKRTIQTAEAL-SVPYEQFKVLNEIDAGVCEEMTYEEIQDHYPLEF 348 (469)
T ss_dssp CCBCHHHHHHHHHHHHHHHHH--TCTTCEEEECSSHHHHHHHTTS-SSCCEECGGGSCCCCGGGTTCBHHHHHHHCHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHh-CCCceECcccccccCCccCCCCHHHHHHHCHHHH
Confidence 999999999999999999875 5678999999999999999987 7888899999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 005388 662 EARKKDKLRYRYPRGESYLDVIQRFAACPCSIWC 695 (699)
Q Consensus 662 ~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~ 695 (699)
..|..+++.+++|+|||+.++.+|+.+++.+|..
T Consensus 349 ~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~ 382 (469)
T 1bif_A 349 ALRDQDKYRYRYPKGESYEDLVQRLEPVIMELER 382 (469)
T ss_dssp HHHHHCTTTCCCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCccccCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999998853
No 3
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=99.94 E-value=1.1e-26 Score=232.38 Aligned_cols=140 Identities=29% Similarity=0.321 Sum_probs=126.8
Q ss_pred cccCCCCcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---c
Q 005388 553 VNTHLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A 627 (699)
Q Consensus 553 mN~~~~~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~ 627 (699)
||.+..+|+||||||||+.+|..++++| |.|||+.|++||+.++++|... +..++.|||||+.||+|||+++ .
T Consensus 1 ~~~~~~~~~l~lvRHGet~~n~~~~~~g~~D~pLt~~G~~qA~~l~~~L~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~ 78 (211)
T 1fzt_A 1 MTTEAAPNLLVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSR--GYKFDIAFTSALQRAQKTCQIILEEV 78 (211)
T ss_dssp CCCTTSCCEEEECBCCCBHHHHHTBCCSSSCCCBCHHHHHHHHHHHHHHHHH--TCCCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEEeCCCCcccccCcccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHHHhc
Confidence 6778888999999999999999888888 9999999999999999998765 4589999999999999999998 3
Q ss_pred C---CCccccccccccccCcCCCCCHHHHHHhCHHH-HHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 005388 628 G---FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWC 695 (699)
Q Consensus 628 g---~~v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~ 695 (699)
+ .++.+++.|+|+++|.|+|++.+++.+.||.. +..|..++ .+.+|+|||+.++..|+..+++++..
T Consensus 79 ~~~~~~~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~w~~~~-~~~~p~gEs~~~~~~R~~~~l~~l~~ 149 (211)
T 1fzt_A 79 GEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWRRSY-DIAPPNGESLKDTAERVLPYYKSTIV 149 (211)
T ss_dssp TCTTSEEEEESTTSCCCCGGGTTCBHHHHHHHHHHHHHHHHHSSS-SCCSTTCCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCceEECcccccccCceecCCCHHHHHHhccHHHHHHHhhCC-CcCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 3 67888999999999999999999999999875 77787765 78899999999999999999999864
No 4
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=99.94 E-value=2.2e-26 Score=230.01 Aligned_cols=134 Identities=34% Similarity=0.387 Sum_probs=124.6
Q ss_pred cceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cCCCcccc
Q 005388 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQW 634 (699)
Q Consensus 560 ~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g~~v~~~ 634 (699)
|+||||||||+.+|..++++| |.|||+.|++||+.++++|. ...++.|||||+.||+|||+++ .+.++.++
T Consensus 2 m~l~lvRHGet~~n~~~~~~g~~D~pLt~~G~~qA~~~~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 77 (207)
T 1h2e_A 2 TTLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLE----AVELAAIYTSTSGRALETAEIVRGGRLIPIYQD 77 (207)
T ss_dssp EEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHTT----TSCCSEEEECSSHHHHHHHHHHHTTCSCCEEEC
T ss_pred CEEEEEeCcCCcccccccCCCCCCCCCCHHHHHHHHHHHHHHc----CCCCCEEEECccHHHHHHHHHHHhcCCCCeEEC
Confidence 589999999999999888888 99999999999999997664 4689999999999999999998 46788899
Q ss_pred ccccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 005388 635 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWCLC 697 (699)
Q Consensus 635 ~~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~ea 697 (699)
+.|+|+++|.|+|++.+++.+.||+.+..|..++..+.+|+|||+.++.+|+..+++++....
T Consensus 78 ~~L~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~ 140 (207)
T 1h2e_A 78 ERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDRH 140 (207)
T ss_dssp GGGSCCCCGGGTTCBHHHHHHHCHHHHHHHHHCGGGCCCSSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCceecCCCCHHHHHHHCHHHHHHHhhCccccCCCCCccHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999989999999999999999999999997653
No 5
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=99.93 E-value=5.9e-26 Score=227.37 Aligned_cols=136 Identities=24% Similarity=0.277 Sum_probs=118.1
Q ss_pred ecccCCCCcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhhcCC
Q 005388 552 LVNTHLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGF 629 (699)
Q Consensus 552 LmN~~~~~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i~g~ 629 (699)
|||++..+|+|||||||++.+|..++++| |.|||+.|++||+.++++|... ...++.|||||+.||+|||+++ +.
T Consensus 3 ~m~M~~~~~~l~lvRHG~t~~n~~~~~~g~~D~pLt~~G~~qA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~~-~~ 79 (208)
T 2a6p_A 3 AMAMGVRNHRLLLLRHGETAWSTLGRHTGGTEVELTDTGRTQAELAGQLLGEL--ELDDPIVICSPRRRTLDTAKLA-GL 79 (208)
T ss_dssp ------CCCCEEEEECCCBTTGGGTBCCSSCCCCBCHHHHHHHHHHHHHHHTT--CCSSCEEEECSSHHHHHHHHHT-TC
T ss_pred ccccCCCceEEEEEeCCCCcccccCcCcCCCCCCCCHHHHHHHHHHHHHHhcC--CCCCCEEEECCcHHHHHHHHHh-CC
Confidence 67777667899999999999999888888 9999999999999999988643 3344999999999999999985 78
Q ss_pred Cc-cccccccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005388 630 PK-IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWCL 696 (699)
Q Consensus 630 ~v-~~~~~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~e 696 (699)
++ .+++.|+|+++|.|+|++.+++.+.+|+ +..|..++ |+|||+.++..|+..++++|...
T Consensus 80 ~~~~~~~~L~E~~~G~~eg~~~~el~~~~p~-~~~~~~~~-----p~gEs~~~~~~R~~~~l~~l~~~ 141 (208)
T 2a6p_A 80 TVNEVTGLLAEWDYGSYEGLTTPQIRESEPD-WLVWTHGC-----PAGESVAQVNDRADSAVALALEH 141 (208)
T ss_dssp CCSEECGGGCCCCCGGGTTCBHHHHHTTCTT-CCHHHHCC-----TTSCCHHHHHHHHHHHHHHHHHH
T ss_pred CceeeccceeecccceeCCCCHHHHHHhCcc-hhhccCCC-----CCCCCHHHHHHHHHHHHHHHHHh
Confidence 88 8999999999999999999999999998 88888764 89999999999999999999764
No 6
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural genomics, medical STRU genomics of pathogenic protozoa, MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Probab=99.92 E-value=6.8e-25 Score=225.50 Aligned_cols=140 Identities=26% Similarity=0.352 Sum_probs=120.6
Q ss_pred ccCCCCcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cC
Q 005388 554 NTHLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG 628 (699)
Q Consensus 554 N~~~~~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g 628 (699)
+.++.+++||||||||+.+|..++++| |.|||+.|++||+.++++|.+. +..++.|||||+.||+|||+++ ++
T Consensus 6 ~~~~~~~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~ 83 (258)
T 3kkk_A 6 HHHMTTYTLVLLRHGESTWNKENKFTGWTDVPLSEKGEEEAIAAGKYLKEK--NFKFDVVYTSVLKRAICTAWNVLKTAD 83 (258)
T ss_dssp ----CCEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred ccccceeEEEEEECCCccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECchHHHHHHHHHHHHhcC
Confidence 345677999999999999999999998 9999999999999999998764 5689999999999999999998 33
Q ss_pred ---CCccccccccccccCcCCCCCHHHHHHhCHHH-HHHHHhCCC------------------------CCCCCCCCCHH
Q 005388 629 ---FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYL 680 (699)
Q Consensus 629 ---~~v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-~~~~~~d~~------------------------~~~~PgGES~~ 680 (699)
.++.+++.|+|+++|.|+|++.+++.+.||+. +..|..... .+++|+|||+.
T Consensus 84 ~~~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~ 163 (258)
T 3kkk_A 84 LLHVPVVKTWRLNERHCGSLQGLNKSETAKKYGEEQVKIWRRSYDIPPPKLDKEDNRWPGHNVVYKNVPKDALPFTECLK 163 (258)
T ss_dssp CTTSCEEECGGGCCCCCGGGTTSBHHHHHHHTCHHHHHHHHHCSSCCCCCCCTTSTTCGGGCGGGTTSCGGGSCSCCCHH
T ss_pred CCCCCeeEccccceeccCcccCCCHHHHHHHhHHHHHHHHhhhcccCCcccccccccccccccccccccccCCCCCCCHH
Confidence 68889999999999999999999999999976 666765311 12478999999
Q ss_pred HHHHHHHHHHHHHHH
Q 005388 681 DVIQRFAACPCSIWC 695 (699)
Q Consensus 681 dv~~Rv~~~L~~L~~ 695 (699)
++..|+..++++|+.
T Consensus 164 ~~~~Rv~~~l~~l~~ 178 (258)
T 3kkk_A 164 DTVERVLPFWFDHIA 178 (258)
T ss_dssp HHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999754
No 7
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=99.92 E-value=6.7e-25 Score=224.64 Aligned_cols=136 Identities=25% Similarity=0.261 Sum_probs=118.8
Q ss_pred CcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cC---CC
Q 005388 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (699)
Q Consensus 559 ~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g---~~ 630 (699)
|++||||||||+.+|..++++| |.|||+.|++||+.++++|... +.+++.|||||+.||+|||+++ .+ .+
T Consensus 2 M~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~l~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 79 (249)
T 1e58_A 2 VTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEE--GYSFDFAYTSVLKRAIHTLWNVLDELDQAWLP 79 (249)
T ss_dssp CEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCTTSC
T ss_pred ceEEEEEeCCCCcccccCCccCcCCCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEECCcHHHHHHHHHHHHhcCCCCCC
Confidence 5799999999999999999988 9999999999999999998754 5689999999999999999998 33 67
Q ss_pred ccccccccccccCcCCCCCHHHHHHhCHHH-HHHHHhCC------------------------CCCCCCCCCCHHHHHHH
Q 005388 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQR 685 (699)
Q Consensus 631 v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-~~~~~~d~------------------------~~~~~PgGES~~dv~~R 685 (699)
+.+++.|+|+++|.|+|++.+++.+.||.. +..|..+. ..+.+|+|||+.++..|
T Consensus 80 ~~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R 159 (249)
T 1e58_A 80 VEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDR 159 (249)
T ss_dssp EEECGGGCCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCTTCCCCCCCTTSTTCGGGSGGGTTCCTTTSCSCCCHHHHHHH
T ss_pred eeeCcccccccCcccCCCcHHHHHHHhhHHHHHHHHhccccCCcccccccccccccchhhhccccCCCCCCCCHHHHHHH
Confidence 888999999999999999999999999875 66776532 01356899999999999
Q ss_pred HHHHHHH-HHHH
Q 005388 686 FAACPCS-IWCL 696 (699)
Q Consensus 686 v~~~L~~-L~~e 696 (699)
+..++++ |...
T Consensus 160 v~~~l~~~i~~~ 171 (249)
T 1e58_A 160 VIPYWNETILPR 171 (249)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHhh
Confidence 9999999 6543
No 8
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=99.92 E-value=3.6e-25 Score=222.41 Aligned_cols=133 Identities=22% Similarity=0.200 Sum_probs=118.2
Q ss_pred CCCcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cCCCc
Q 005388 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPK 631 (699)
Q Consensus 557 ~~~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g~~v 631 (699)
|++++||||||||+.+|. +++| |.|||+.|++||+.+++.| +.+++.|||||+.||+|||+++ .+.++
T Consensus 3 m~~~~i~lvRHGet~~n~--~~~g~~D~pLt~~G~~QA~~~~~~l-----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~ 75 (213)
T 3hjg_A 3 LKTLNIYLMRHGKVDAAP--GLHGQTDLKVKEAEQQQIAMAWKTK-----GYDVAGIISSPLSRCHDLAQILAEQQLLPM 75 (213)
T ss_dssp -CEEEEEEEECCCCSSCS--BCCSSSCCCCCHHHHHHHHHHHHHT-----TCCCSCEEECSSHHHHHHHHHHHHHHTCCE
T ss_pred CceeEEEEECCCCcCCCC--cccCCCCCCCCHHHHHHHHHHHHhc-----CCCCCEEEECChHHHHHHHHHHHhccCCCc
Confidence 567899999999999983 5666 9999999999999998654 4689999999999999999999 57899
Q ss_pred cccccccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 005388 632 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWCLC 697 (699)
Q Consensus 632 ~~~~~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~ea 697 (699)
.+++.|+|+++|.|+|++.+++.+.+|. +..|+.++..+.+|+|||+.++.+|+..++++|.+..
T Consensus 76 ~~~~~L~E~~~G~~eg~~~~e~~~~~~~-~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~ 140 (213)
T 3hjg_A 76 TTEDDLQEMDFGDFDGMPFDLLTEHWKK-LDAFWQSPAHHSLPNAESLSTFSQRVSRAWSQIINDI 140 (213)
T ss_dssp EECGGGSCCCCTTSTTCBTTHHHHSCCC-THHHHHCGGGCCCTTCCCHHHHHHHHHHHHHHHHHHC
T ss_pred EEccccEeCcCCccCCcCHHHHHHhhHH-HHHHHhCcccCCCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999988765 5566678888999999999999999999999998754
No 9
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET: CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Probab=99.91 E-value=1.7e-24 Score=223.89 Aligned_cols=136 Identities=25% Similarity=0.245 Sum_probs=117.8
Q ss_pred CCcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cC---C
Q 005388 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---F 629 (699)
Q Consensus 558 ~~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g---~ 629 (699)
.|++||||||||+.+|..++++| |.|||+.|++||+.++++|.+. +..++.|||||+.||+|||+++ ++ .
T Consensus 2 ~M~~l~LvRHGqt~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~ 79 (262)
T 1yfk_A 2 AAYKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDA--GYEFDICFTSVQKRAIRTLWTVLDAIDQMWL 79 (262)
T ss_dssp -CEEEEEEECCCBTTTTTTBCCTTSCCCBCHHHHHHHHHHHHHHHHH--TCCCSEEEECSCHHHHHHHHHHHHHTTCTTS
T ss_pred CceEEEEEeCCCcccccccCcCCCCCCCCCHHHHHHHHHHHHHHHhC--CCCCCEEEECCcHHHHHHHHHHHHhcCCCCC
Confidence 46799999999999999999988 9999999999999999998765 5689999999999999999998 33 6
Q ss_pred CccccccccccccCcCCCCCHHHHHHhCHHH-HHHHHhCC---------------------C-----CCCCCCCCCHHHH
Q 005388 630 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK---------------------L-----RYRYPRGESYLDV 682 (699)
Q Consensus 630 ~v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-~~~~~~d~---------------------~-----~~~~PgGES~~dv 682 (699)
++..++.|+|+++|.|+|++.+++.+.||+. +..|..+. . ...+|+|||+.++
T Consensus 80 ~v~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~p~~~~~~~~~~~~i~~d~~~~~~~~~~~p~gEs~~~~ 159 (262)
T 1yfk_A 80 PVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDRRYADLTEDQLPSCESLKDT 159 (262)
T ss_dssp CEEECGGGSCCCCGGGTTSBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTHHHHHTCGGGTTSCTTTSCSCCCHHHH
T ss_pred CeeeCcccccccCcccCCCcHHHHHHHccHHHHHHHHhccccCCCcccccccccccccccccccccccCCCCCCCCHHHH
Confidence 7888999999999999999999999999865 56665431 1 1246899999999
Q ss_pred HHHHHHHHHHHHH
Q 005388 683 IQRFAACPCSIWC 695 (699)
Q Consensus 683 ~~Rv~~~L~~L~~ 695 (699)
..|+..+|++++.
T Consensus 160 ~~Rv~~~l~~li~ 172 (262)
T 1yfk_A 160 IARALPFWNEEIV 172 (262)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999653
No 10
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria, glycolysis, I structural genomics consortium, SGC; 2.01A {Cryptosporidium parvum}
Probab=99.91 E-value=2e-24 Score=224.26 Aligned_cols=135 Identities=25% Similarity=0.324 Sum_probs=118.3
Q ss_pred CcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cC---CC
Q 005388 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (699)
Q Consensus 559 ~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g---~~ 630 (699)
|++||||||||+.+|..++++| |.|||+.|++||+.++++|.+. +..++.|||||+.||+|||+++ .+ .+
T Consensus 20 M~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 97 (267)
T 3d8h_A 20 TYKLTLIRHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLLEK--GFKFDVVYTSVLKRAIMTTWTVLKELGNINCP 97 (267)
T ss_dssp CEEEEEEECCCBTTTTTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCTTSC
T ss_pred ceEEEEEeCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCCCCCC
Confidence 4799999999999999999988 9999999999999999998754 5689999999999999999998 23 67
Q ss_pred ccccccccccccCcCCCCCHHHHHHhCHHH-HHHHHhCC--------------------C----CCCCCCCCCHHHHHHH
Q 005388 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK--------------------L----RYRYPRGESYLDVIQR 685 (699)
Q Consensus 631 v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-~~~~~~d~--------------------~----~~~~PgGES~~dv~~R 685 (699)
+.+++.|+|+++|.|+|++.+++.+.||.. +..|..+. + .+.+|+|||+.++.+|
T Consensus 98 i~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R 177 (267)
T 3d8h_A 98 IINHWRLNERHYGALQGLNKSETASKFGEDQVKIWRRSFDVPPPVLEKSDPRWPGNELIYKGICPSCLPTTECLKDTVER 177 (267)
T ss_dssp EEECGGGSCCCCGGGTTCBHHHHHHHSCHHHHHHHHHCSSCCCCCCCTTSTTSGGGSGGGTTSCGGGSCSCCCHHHHHHH
T ss_pred eeECcccccccCCcccCCCHHHHHHhhhHHHHHHHHhccccCCcccccccccccccchhhhccccCCCCCCCCHHHHHHH
Confidence 888999999999999999999999999875 56675431 0 1356899999999999
Q ss_pred HHHHHHH-HHH
Q 005388 686 FAACPCS-IWC 695 (699)
Q Consensus 686 v~~~L~~-L~~ 695 (699)
+..+|++ |..
T Consensus 178 v~~~l~~~i~~ 188 (267)
T 3d8h_A 178 VKPYFEDVIAP 188 (267)
T ss_dssp HHHHHHHTHHH
T ss_pred HHHHHHHHHHh
Confidence 9999999 654
No 11
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=99.91 E-value=9.9e-25 Score=226.31 Aligned_cols=138 Identities=28% Similarity=0.319 Sum_probs=118.7
Q ss_pred CCCcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cC---
Q 005388 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG--- 628 (699)
Q Consensus 557 ~~~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g--- 628 (699)
|++++||||||||+.+|..++++| |.|||+.|++||+.++++|... +..++.|||||+.||+|||+++ ++
T Consensus 1 M~~~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~ 78 (267)
T 2hhj_A 1 MSKYKLIMLRHGEGAWNKENRFCSWVDQKLNSEGMEEARNCGKQLKAL--NFEFDLVFTSVLNRSIHTAWLILEELGQEW 78 (267)
T ss_dssp -CCEEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCTT
T ss_pred CCceEEEEEeCCCCCccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCcCEEEECCcHHHHHHHHHHHHhcCCCC
Confidence 356899999999999999999988 9999999999999999998754 5689999999999999999998 23
Q ss_pred CCccccccccccccCcCCCCCHHHHHHhCHHH-HHHHHhC--------------------CCCC--------CCCCCCCH
Q 005388 629 FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKD--------------------KLRY--------RYPRGESY 679 (699)
Q Consensus 629 ~~v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-~~~~~~d--------------------~~~~--------~~PgGES~ 679 (699)
.++.++++|+|+++|.|+|++.+++.+.||+. +..|..+ +..+ .+|+|||+
T Consensus 79 ~~v~~~~~L~E~~~G~~eG~~~~e~~~~~p~~~~~~w~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~p~gEs~ 158 (267)
T 2hhj_A 79 VPVESSWRLNERHYGALIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEIYNDRRYKVCDVPLDQLPRSESL 158 (267)
T ss_dssp SCEEECGGGSCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTHHHHHTCGGGTSSSSCGGGSCSSCCH
T ss_pred CCeeEcccccccccCCCCCCCHHHHHHHhhHHHHHHHHhcccCCCCcccccccccccccccccccccccccCCCCCCCCH
Confidence 67888999999999999999999999999875 5667431 1122 26899999
Q ss_pred HHHHHHHHHHHHH-HHHH
Q 005388 680 LDVIQRFAACPCS-IWCL 696 (699)
Q Consensus 680 ~dv~~Rv~~~L~~-L~~e 696 (699)
.++..|+..+|++ |...
T Consensus 159 ~~~~~Rv~~~l~~~i~~~ 176 (267)
T 2hhj_A 159 KDVLERLLPYWNERIAPE 176 (267)
T ss_dssp HHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 9999999999999 6543
No 12
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=99.91 E-value=1.3e-24 Score=223.61 Aligned_cols=138 Identities=23% Similarity=0.271 Sum_probs=120.4
Q ss_pred CCCCcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cC--
Q 005388 556 HLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG-- 628 (699)
Q Consensus 556 ~~~~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g-- 628 (699)
|..|.+.||||||||+||..++++| |+|||+.|++||+.++++|... +.+++.|||||+.||+|||+++ ++
T Consensus 6 ~~~~~~~~lvRHGeT~~N~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~ 83 (257)
T 3gp3_A 6 HHHMYKLVLIRHGESTWNKENRFTGWVDVDLTEQGNREARQAGQLLKEA--GYTFDIAYTSVLKRAIRTLWHVQDQMDLM 83 (257)
T ss_dssp ---CEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCT
T ss_pred ccceeeEEEEECCCCcccccCccCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEeCChHHHHHHHHHHHHhcCCC
Confidence 3446789999999999999999999 9999999999999999998764 5689999999999999999998 34
Q ss_pred -CCccccccccccccCcCCCCCHHHHHHhCHHH-HHHHHhCCC------------------------CCCCCCCCCHHHH
Q 005388 629 -FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDV 682 (699)
Q Consensus 629 -~~v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-~~~~~~d~~------------------------~~~~PgGES~~dv 682 (699)
.++.+++.|+|+++|.|+|++.+++.+.||+. +..|..+.. .+++|+|||+.++
T Consensus 84 ~~~i~~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~~w~~~~~~~pp~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~~~ 163 (257)
T 3gp3_A 84 YVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQVLVWRRSYDTPPPALEPGDERAPYADPRYAKVPREQLPLTECLKDT 163 (257)
T ss_dssp TSCEEECGGGSCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCTTCCCCCCCTTCTTCSTTCGGGTTSCGGGSCSSCCHHHH
T ss_pred CCceeECCCccccCCccccCCCHHHHHHHhhHHHHHHHHhccccCCcccccccccccccccccccccccCCCCCCCHHHH
Confidence 78899999999999999999999999999975 667765421 1357899999999
Q ss_pred HHHHHHHHHHHHH
Q 005388 683 IQRFAACPCSIWC 695 (699)
Q Consensus 683 ~~Rv~~~L~~L~~ 695 (699)
..|+..+|++|+.
T Consensus 164 ~~Rv~~~l~~l~~ 176 (257)
T 3gp3_A 164 VARVLPLWNESIA 176 (257)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 13
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=99.91 E-value=3.4e-24 Score=218.20 Aligned_cols=135 Identities=27% Similarity=0.283 Sum_probs=117.2
Q ss_pred cceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cC---CCc
Q 005388 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPK 631 (699)
Q Consensus 560 ~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g---~~v 631 (699)
|+||||||||+.+|..++++| |.|||+.|++||+.++++|.+. +.+++.|||||+.||+|||+++ ++ .++
T Consensus 1 m~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 78 (240)
T 1qhf_A 1 PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEK--KVYPDVLYTSKLSRAIQTANIALEKADRLWIPV 78 (240)
T ss_dssp CEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHTTCTTSCE
T ss_pred CEEEEEECCCcccccCCcccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCcCEEEECCcHHHHHHHHHHHHhcCCCCCCe
Confidence 579999999999999999888 9999999999999999998754 5689999999999999999998 22 678
Q ss_pred cccccccccccCcCCCCCHHHHHHhCHHH-HHHHHhCCC------------------------CCCCCCCCCHHHHHHHH
Q 005388 632 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQRF 686 (699)
Q Consensus 632 ~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-~~~~~~d~~------------------------~~~~PgGES~~dv~~Rv 686 (699)
.+++.|+|+++|.|+|++.+++.+.||+. +..|..+.. .+.+|+|||+.++.+|+
T Consensus 79 ~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~ 158 (240)
T 1qhf_A 79 NRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRL 158 (240)
T ss_dssp EECGGGSCCCCGGGTTCBHHHHHHHHHHHHHHHHHHCSSCCCCCCCTTSTTCCTTCGGGTTSCGGGSCSSCCHHHHHHHH
T ss_pred eeCcccccccCCcccCCcHHHHHHHhhHHHHHHHhhccccCCccccccchhhcccchhhcccccCCCCCCCCHHHHHHHH
Confidence 88999999999999999999999999865 566754311 12458999999999999
Q ss_pred HHHHHH-HHHH
Q 005388 687 AACPCS-IWCL 696 (699)
Q Consensus 687 ~~~L~~-L~~e 696 (699)
..++++ |...
T Consensus 159 ~~~l~~~i~~~ 169 (240)
T 1qhf_A 159 LPYWQDVIAKD 169 (240)
T ss_dssp HHHHHHTHHHH
T ss_pred HHHHHHHHHhh
Confidence 999999 7653
No 14
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.30A {Borrelia burgdorferi}
Probab=99.91 E-value=3.3e-24 Score=223.00 Aligned_cols=136 Identities=22% Similarity=0.196 Sum_probs=120.1
Q ss_pred CCcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cC---C
Q 005388 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---F 629 (699)
Q Consensus 558 ~~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g---~ 629 (699)
.|++||||||||+.+|..++++| |.|||+.|++||+.++++|.+. ...++.|||||+.||+|||+++ ++ .
T Consensus 26 mm~~i~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~--~~~~d~v~sSpl~Ra~qTA~~i~~~~~~~~~ 103 (274)
T 4emb_A 26 FMYKLVLVRHGESEWNKENLFTGWTDVKLSDKGIDEAVEAGLLLKQE--GYSFDIAFSSLLSRANDTLNIILRELGQSYI 103 (274)
T ss_dssp CCEEEEEEECCCBTTTTTTCCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHTTCTTS
T ss_pred hceEEEEEeCCCCcccccCcccCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCCCCC
Confidence 46899999999999999999988 9999999999999999998764 5689999999999999999998 33 6
Q ss_pred CccccccccccccCcCCCCCHHHHHHhCHHH-HHHHHhCCC------------------------CCCCCCCCCHHHHHH
Q 005388 630 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQ 684 (699)
Q Consensus 630 ~v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-~~~~~~d~~------------------------~~~~PgGES~~dv~~ 684 (699)
++.+++.|+|+++|.|+|++.+++.+.||+. +..|..+.. .+++|+|||+.++..
T Consensus 104 ~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~pp~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~~~~~ 183 (274)
T 4emb_A 104 SVKKTWRLNERHYGALQGLNKSETAAKYGEDKVLIWRRSYDVPPMSLDESDDRHPIKDPRYKHIPKRELPSTECLKDTVA 183 (274)
T ss_dssp EEEECGGGSCCCCGGGTTCCHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTCGGGSGGGTTSCGGGSCSCCCHHHHHH
T ss_pred CeeECccccccccccccCCCHHHHHHHhHHHHHHHHHhccccCCcccccccccccccccccccccccCCCCCCCHHHHHH
Confidence 7889999999999999999999999999875 667765321 136789999999999
Q ss_pred HHHHHHHHHHH
Q 005388 685 RFAACPCSIWC 695 (699)
Q Consensus 685 Rv~~~L~~L~~ 695 (699)
|+..+|++|+.
T Consensus 184 Rv~~~l~~l~~ 194 (274)
T 4emb_A 184 RVIPYWTDEIA 194 (274)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 15
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate mutase, SH3 domain binding, structural genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Probab=99.91 E-value=4.6e-24 Score=221.80 Aligned_cols=135 Identities=30% Similarity=0.359 Sum_probs=117.3
Q ss_pred CcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cC---CC
Q 005388 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (699)
Q Consensus 559 ~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g---~~ 630 (699)
|++||||||||+.+|..++++| |.|||+.|++||+.++++|.+. +..++.|||||+.||+|||+++ ++ .+
T Consensus 4 m~~l~LvRHGet~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 81 (265)
T 1rii_A 4 TGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEH--DLLPDVLYTSLLRRAITTAHLALDSADRLWIP 81 (265)
T ss_dssp CCEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSCHHHHHHHHHHHHHTTCTTSC
T ss_pred ceEEEEEeCCCCcccccCCccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHHHHcCCCCCC
Confidence 5799999999999999999998 9999999999999999998754 5689999999999999999998 33 67
Q ss_pred ccccccccccccCcCCCCCHHHHHHhCHHH-HHHHHhCCC------------------CCC----CCCCCCHHHHHHHHH
Q 005388 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------RYR----YPRGESYLDVIQRFA 687 (699)
Q Consensus 631 v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-~~~~~~d~~------------------~~~----~PgGES~~dv~~Rv~ 687 (699)
+..+++|+|+++|.|+|++.+++.++||+. +..|..+.. .|. .|+|||+.++..|+.
T Consensus 82 v~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~p~gEs~~~~~~Rv~ 161 (265)
T 1rii_A 82 VRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIGGGPLTECLADVVARFL 161 (265)
T ss_dssp EEECGGGSCCCCGGGTTSBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTCTTCCTTCGGGGGGTTCCSCCCHHHHHHHHH
T ss_pred eeECccccccccccccCCCHHHHHHHchHHHHHHHHhccccCCCccccccccccccchhhccCCCCCCCCCHHHHHHHHH
Confidence 888999999999999999999999999875 566765311 111 189999999999999
Q ss_pred HHHHH-HHH
Q 005388 688 ACPCS-IWC 695 (699)
Q Consensus 688 ~~L~~-L~~ 695 (699)
++|++ |..
T Consensus 162 ~~l~~~i~~ 170 (265)
T 1rii_A 162 PYFTDVIVG 170 (265)
T ss_dssp HHHHHTHHH
T ss_pred HHHHHHHHH
Confidence 99999 654
No 16
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.45A {Mycobacterium leprae}
Probab=99.90 E-value=6.1e-24 Score=220.50 Aligned_cols=134 Identities=28% Similarity=0.327 Sum_probs=118.5
Q ss_pred CcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cC---CC
Q 005388 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (699)
Q Consensus 559 ~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g---~~ 630 (699)
+++||||||||+.+|..++++| |.|||+.|++||+.++++|.+. ...++.|||||+.||+|||+++ ++ .+
T Consensus 27 ~~~i~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 104 (268)
T 4eo9_A 27 TATLILLRHGESDWNARNLFTGWVDVGLTDKGRAEAVRSGELLAEH--NLLPDVLYTSLLRRAITTAHLALDTADWLWIP 104 (268)
T ss_dssp CEEEEEEECCCBHHHHTTCCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHTTCTTSC
T ss_pred ceEEEEEECCccccccCCCccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHHHhcCCCCCC
Confidence 4789999999999999999988 9999999999999999988754 5689999999999999999998 33 78
Q ss_pred ccccccccccccCcCCCCCHHHHHHhCHHH-HHHHHhCCCCC----------------------CCCCCCCHHHHHHHHH
Q 005388 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKLRY----------------------RYPRGESYLDVIQRFA 687 (699)
Q Consensus 631 v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-~~~~~~d~~~~----------------------~~PgGES~~dv~~Rv~ 687 (699)
+.+++.|+|+++|.|+|++.+++.+.||+. +..|..+.... ++|+|||+.++..|+.
T Consensus 105 ~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~gEs~~~~~~Rv~ 184 (268)
T 4eo9_A 105 VRRSWRLNERHYGALQGLDKAVTKARYGEERFMAWRRSYDTPPPPIEKGSEFSQDADPRYTDIGGGPLTECLADVVTRFL 184 (268)
T ss_dssp EEECGGGSCCCCGGGTTCCHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTCCTTCGGGGGGTTCCSCCCHHHHHHHHH
T ss_pred eEECccccccccCCcCCCCHHHHHHHccHHHHHHhhcccccCCccccccccccccccccccccCCCCCCCCHHHHHHHHH
Confidence 899999999999999999999999999874 77787653221 3589999999999999
Q ss_pred HHHHHHH
Q 005388 688 ACPCSIW 694 (699)
Q Consensus 688 ~~L~~L~ 694 (699)
.+|++++
T Consensus 185 ~~l~~~i 191 (268)
T 4eo9_A 185 PYFTDVI 191 (268)
T ss_dssp HHHHHTH
T ss_pred HHHHHHH
Confidence 9999854
No 17
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=5.3e-24 Score=215.44 Aligned_cols=134 Identities=14% Similarity=0.045 Sum_probs=114.8
Q ss_pred ccCCCCcceEEecccccccccCCcccCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cCCC
Q 005388 554 NTHLTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFP 630 (699)
Q Consensus 554 N~~~~~~~I~LVRHGeS~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g~~ 630 (699)
|.+.+||+||||||||+.+|..+++ .|.|||+.|++||+.++++|... +++.|||||+.||+|||++| .+.+
T Consensus 16 ~~~~~mm~l~LvRHGet~~n~~~~~-~D~pLt~~G~~QA~~l~~~L~~~----~~d~i~sSpl~Ra~qTA~~i~~~~~~~ 90 (219)
T 2qni_A 16 NLYFQGMHALYITHPQVKIDPAVPV-PEWGLSERGAERAREASRLPWAK----ALRRIVSSAETKAIETAHMLAETSGAA 90 (219)
T ss_dssp -----CCEEEEEECCCBCCCSSSCG-GGCCBCHHHHHHHHHHHTSHHHH----TCCEEEECSSHHHHHHHHHHTTTTCCE
T ss_pred hhhhcCcEEEEEeCCCCcccccCcc-CCCCcCHHHHHHHHHHHHHHhcC----CCCEEEECCcHHHHHHHHHHHHhcCCC
Confidence 4445578999999999999988776 49999999999999999888653 78999999999999999999 4678
Q ss_pred ccccccccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 005388 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWCLC 697 (699)
Q Consensus 631 v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~ea 697 (699)
+.+++.|+|+++|.|+|++.+++. +.+..|..++. +.+|+|||+.++.+|+..++++|.+..
T Consensus 91 ~~~~~~L~E~~~G~~eg~~~~~~~----~~~~~~~~~~~-~~~p~gEs~~~~~~Rv~~~l~~l~~~~ 152 (219)
T 2qni_A 91 IEIIEAMHENDRSATGFLPPPEFE----KAADWFFAHPE-ESFQGWERAIDAQARIVEAVKAVLDRH 152 (219)
T ss_dssp EEECGGGCCCCCGGGCCCCHHHHH----HHHHHHHHCTT-SCSTTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred EEECcccccCCCccccCccHHHHH----HHHHHHHhCcc-cCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999988864 45677887764 778999999999999999999997653
No 18
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced glycolysis and apoptosis regulator, CAsp target, structural genomics medical relevance; HET: MSE; 1.75A {Homo sapiens}
Probab=99.90 E-value=5.1e-24 Score=221.90 Aligned_cols=135 Identities=24% Similarity=0.221 Sum_probs=120.4
Q ss_pred cCCCCcceEEecccccccccCCcccC---CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhhc----
Q 005388 555 THLTPRPILLTRHGESRDNVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA---- 627 (699)
Q Consensus 555 ~~~~~~~I~LVRHGeS~~N~~~~~~G---D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i~---- 627 (699)
+++..++||||||||+.+|..++++| |.|||+.|++||+.++++|. ...++.|||||+.||+|||+++.
T Consensus 4 ~~~~~~~i~LvRHGet~~n~~~~~~G~~~D~~Lt~~G~~QA~~l~~~l~----~~~~~~v~sSpl~Ra~qTA~~i~~~~~ 79 (275)
T 3dcy_A 4 FQSARFALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLN----NVKFTHAFSSDLMRTKQTMHGILERSK 79 (275)
T ss_dssp ECCEEEEEEEEECCCBHHHHHTBCCSSSSCCCBCHHHHHHHHHHHHHTT----TCCCSEEEECSSHHHHHHHHHHHTTCS
T ss_pred ccccCcEEEEEeCCCcccccCCccCCCCCCCCcCHHHHHHHHHHHHHhc----cCCCCEEEECChHHHHHHHHHHHHhcc
Confidence 34567899999999999999888877 99999999999999997664 56899999999999999999982
Q ss_pred ---CCCccccccccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 005388 628 ---GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWCLC 697 (699)
Q Consensus 628 ---g~~v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~ea 697 (699)
+.++.+++.|+|+++|.|+|++.+++.+.+| .|..++..+++|+|||+.++..|+..++++|....
T Consensus 80 ~~~~~~v~~~~~L~E~~~G~~eg~~~~ei~~~~~----~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~ 148 (275)
T 3dcy_A 80 FCKDMTVKYDSRLRERKYGVVEGKALSELRAMAK----AAREECPVFTPPGGETLDQVKMRGIDFFEFLCQLI 148 (275)
T ss_dssp SCTTCCEEECGGGSCCCBGGGTTSBHHHHHHHHH----HTTCCTTTCCCTTBCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCeeECcccccCccCCcCCCCHHHHHHHHH----HHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999988765 46667778999999999999999999999998753
No 19
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio} PDB: 3e9d_A 3e9e_A
Probab=99.90 E-value=5.4e-24 Score=220.53 Aligned_cols=131 Identities=29% Similarity=0.332 Sum_probs=84.7
Q ss_pred CCcceEEecccccccccCCcccC---CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---c----
Q 005388 558 TPRPILLTRHGESRDNVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A---- 627 (699)
Q Consensus 558 ~~~~I~LVRHGeS~~N~~~~~~G---D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~---- 627 (699)
..|+||||||||+.+|..++++| |.|||+.|++||+.++++|. ...++.|||||+.||+|||+++ +
T Consensus 2 ~~~~l~LvRHGet~~n~~~~~~G~~~D~pLt~~G~~QA~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~ 77 (265)
T 3e9c_A 2 LTFALTIVRHGETQYNRDKLLQGQGIDTPLSDTGHQQAAAAGRYLK----DLHFTNVFVSNLQRAIQTAEIILGNNLHSS 77 (265)
T ss_dssp EEEEEEEEECCCC-------------CCCCCHHHHHHHHHHHHHTT----TCCCSEEEECSSHHHHHHHHHHHHTCSSCT
T ss_pred cccEEEEEeCCCccccccCcccCCCCCCCcCHHHHHHHHHHHHHHh----cCCCCEEEECCcHHHHHHHHHHHHhccccC
Confidence 45789999999999999988877 99999999999999997763 5689999999999999999998 2
Q ss_pred CCCccccccccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005388 628 GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWCL 696 (699)
Q Consensus 628 g~~v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~e 696 (699)
+.++.+++.|+|+++|.|+|++.+++.+.++ .|..++..+++|+|||+.++..|+..++++|...
T Consensus 78 ~~~v~~~~~L~E~~~G~~eg~~~~ei~~~~~----~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~ 142 (265)
T 3e9c_A 78 ATEMILDPLLRERGFGVAEGRPKEHLKNMAN----AAGQSCRDYTPPGGETLEQVKTRFKMFLKSLFQR 142 (265)
T ss_dssp TCCEEECGGGSCCCCC---------------------------------CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEECccceeCcCCCCCCCCHHHHHHHHH----HhccCCccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999988765 3555666789999999999999999999999876
No 20
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.40A {Thermus thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A 2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A 2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A 2enw_A ...
Probab=99.89 E-value=3.9e-24 Score=209.08 Aligned_cols=122 Identities=29% Similarity=0.355 Sum_probs=110.9
Q ss_pred cceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhhcCCCccccccc
Q 005388 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRAL 637 (699)
Q Consensus 560 ~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i~g~~v~~~~~L 637 (699)
|+|||||||++.+|..++++| |.|||+.|++||+.++++|. ..+ |||||+.||+|||+++ +.++.+++.|
T Consensus 1 m~l~lvRHG~t~~n~~~~~~g~~d~pLt~~G~~qA~~l~~~l~----~~~---i~sSpl~Ra~qTA~~l-~~~~~~~~~L 72 (177)
T 1v37_A 1 MELWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALP----SLP---AFSSDLLRARRTAELA-GFSPRLYPEL 72 (177)
T ss_dssp CEEEEEECCCCHHHHHTBCCSSCCCCCCHHHHHHHHHHTTTSC----SCC---EEECSSHHHHHHHHHT-TCCCEECGGG
T ss_pred CEEEEEeCCCCcccccCcccCCCCCCcCHHHHHHHHHHHHHhc----CCC---EEECCcHHHHHHHHHh-CCCcEECccc
Confidence 579999999999999888888 99999999999999997653 323 9999999999999995 7888999999
Q ss_pred cccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 005388 638 DEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSI 693 (699)
Q Consensus 638 ~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L 693 (699)
+|+++|.|+|++.+++.+.||+.+..| ..+.+|+|||+.++..|+..+++++
T Consensus 73 ~E~~~G~~eg~~~~e~~~~~~~~~~~~----~~~~~p~gEs~~~~~~R~~~~l~~l 124 (177)
T 1v37_A 73 REIHFGALEGALWETLDPRYKEALLRF----QGFHPPGGESLSAFQERVFRFLEGL 124 (177)
T ss_dssp SCCCCGGGTTCBGGGSCHHHHHHHHTT----CSCCCTTSCCHHHHHHHHHHHHHHC
T ss_pred eeCCCCcccCCCHHHHHHHCHHHHHHh----hcCCCCCCCCHHHHHHHHHHHHHHc
Confidence 999999999999999999999988888 4678899999999999999999886
No 21
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote structure initiative; 1.75A {Saccharomyces cerevisiae} PDB: 3lg2_A 3oi7_A* 3ll4_A*
Probab=99.89 E-value=6.8e-24 Score=219.64 Aligned_cols=136 Identities=21% Similarity=0.199 Sum_probs=116.5
Q ss_pred CCCcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHH---hccCCCCEEEEcChHHHHHHHhhhc----
Q 005388 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKR---LKSERAASIWTSTLQRTILTASPIA---- 627 (699)
Q Consensus 557 ~~~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~---l~~~~~~~V~sSpL~RA~QTA~~i~---- 627 (699)
+.+++||||||||+.+|..++++| |.+||+.|++||+.++++|.+. +....++.|||||++||+|||+++.
T Consensus 3 ~~~~~l~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~~~~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~ 82 (265)
T 3f3k_A 3 SLTPRCIIVRHGQTEWSKSGQYTGLTDLPLTPYGEGQMLRTGESVFRNNQFLNPDNITYIFTSPRLRARQTVDLVLKPLS 82 (265)
T ss_dssp CCCCEEEEEECCCCHHHHHTCCCSSCCCCCCHHHHHHHHHHHHHHHTC-CCSCGGGEEEEEECSSHHHHHHHHHHTTTSC
T ss_pred CCCcEEEEEECCCCccccccCccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCCCCEEEECCHHHHHHHHHHHHHhcc
Confidence 456899999999999999999888 9999999999999999988652 1114789999999999999999982
Q ss_pred -----CCCccccccccccccCcCCCCCHHHHHHhCHHH-------HHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 005388 628 -----GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-------YEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWC 695 (699)
Q Consensus 628 -----g~~v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~-------~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~ 695 (699)
+.++.+++.|+|+++|.|+|++.+++.+.||+. |..|. ..+|+|||+.++..|+..++++|.+
T Consensus 83 ~~~~~~~~~~~~~~L~E~~~G~~eg~~~~ei~~~~~~~~~~~~~~~~~w~-----~~~p~gEs~~~~~~R~~~~l~~l~~ 157 (265)
T 3f3k_A 83 DEQRAKIRVVVDDDLREWEYGDYEGMLTREIIELRKSRGLDKERPWNIWR-----DGCENGETTQQIGLRLSRAIARIQN 157 (265)
T ss_dssp HHHHHTSEEEECGGGSCCCCGGGTTCCHHHHHHHHHHTTCCSSSCCCHHH-----HCCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEcCCceeeccCccCCCcHHHHHHHhhhccccccchhhhhc-----cCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 267889999999999999999999999988742 22333 2478999999999999999999986
Q ss_pred Hh
Q 005388 696 LC 697 (699)
Q Consensus 696 ea 697 (699)
.+
T Consensus 158 ~~ 159 (265)
T 3f3k_A 158 LH 159 (265)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 22
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=99.89 E-value=1.8e-23 Score=212.24 Aligned_cols=133 Identities=20% Similarity=0.187 Sum_probs=115.0
Q ss_pred CCcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---c---CC
Q 005388 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A---GF 629 (699)
Q Consensus 558 ~~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~---g~ 629 (699)
++++||||||||+.+|..++++| |+|||+.|++||+.++++|. ...++.|||||+.||+|||+++ + +.
T Consensus 12 ~~~~l~lvRHGet~~n~~~~~~G~~D~pLt~~G~~qA~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~ 87 (237)
T 3r7a_A 12 NVVTLYVTRHGKTILNTNHRAQGWADSPLVEKGVEVATNLGTGLK----DIHFMNAYSSDSGRAIETANLVLKYSEQSKL 87 (237)
T ss_dssp CEEEEEEEECCCBHHHHTTBCCSSCCCCBCHHHHHHHHHHHHHTT----TSCEEEEEECSCHHHHHHHHHHHHHTTCTTS
T ss_pred CceEEEEEeCCcccccccccccCCCCCCcCHHHHHHHHHHHHHhc----CCCCCEEEECCcHHHHHHHHHHHHhcccCCC
Confidence 45899999999999999999988 99999999999999997764 5689999999999999999998 2 47
Q ss_pred CccccccccccccCcCCCCCHHHHHHhCHHH----------------HHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 005388 630 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE----------------YEARKKDKLRYRYPRGESYLDVIQRFAACPCSI 693 (699)
Q Consensus 630 ~v~~~~~L~E~~~G~~eG~t~~ei~~~~P~~----------------~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L 693 (699)
++.+++.|+|+++|.|+|++.+++.+.+|.. +..|.... ..+|+|||+.++..|+..++++|
T Consensus 88 ~~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gEs~~~~~~R~~~~l~~l 165 (237)
T 3r7a_A 88 KLEQRKKLRELNFGIFEGEKLDNMWDAVGKAAGVTSPEELLKFSIQEVIDLIRAA--DPTKQAEDWELFSTRIKAEIDKI 165 (237)
T ss_dssp CEEECGGGCCCCCGGGTTSBHHHHHHHHHHHHTCSSGGGGGGSCHHHHHHHHHHH--CTTCCSCCHHHHHHHHHHHHHHH
T ss_pred CeeeCCCCcccCcchhcCCCHHHHHHHhhhhcCCCCHHHHHHhhhhhhhHHHhhc--CCCCCCCCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999998775432 33443321 25689999999999999999999
Q ss_pred HHH
Q 005388 694 WCL 696 (699)
Q Consensus 694 ~~e 696 (699)
...
T Consensus 166 ~~~ 168 (237)
T 3r7a_A 166 SEE 168 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 23
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=99.85 E-value=5.8e-22 Score=205.49 Aligned_cols=137 Identities=25% Similarity=0.298 Sum_probs=113.1
Q ss_pred CCCCcceEEecccccccc------------cCC------------------cccC---CCCCCHHHHHHHHHHHHHHHHH
Q 005388 556 HLTPRPILLTRHGESRDN------------VRG------------------RIGG---DTILSDAGEIYAKKLANFVEKR 602 (699)
Q Consensus 556 ~~~~~~I~LVRHGeS~~N------------~~~------------------~~~G---D~pLTe~G~~QA~~La~~L~~~ 602 (699)
.+.+++||||||||+.+| ..+ +++| |.|||+.|++||+.++++|.+.
T Consensus 6 ~~~~~~l~lvRHGet~~n~~~~~w~~~~~n~~~~y~~~d~n~p~~~~~r~~~~~G~~~D~pLt~~G~~QA~~l~~~L~~~ 85 (273)
T 3d4i_A 6 TISRRGILVIRHGERVDQVFGKSWLQQCTTADGKYYRPDLNFPRSLPRRSNGIKDFENDPPLSSCGIFQARLAGEALLDS 85 (273)
T ss_dssp TSCCCEEEEEECCCBHHHHHCTTHHHHTBCTTSCBCCSSTTSCSCCCCCTTGGGGGGGSCCBCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCccccccccchhHHHhhhccccccccccccCCcccccccCCCcCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 455689999999999985 222 2344 9999999999999999998765
Q ss_pred hccCCCCEEEEcChHHHHHHHhhh---cC----CCccccccccc-cccCcCCC----CCHHHHHHhCHH---HHHHHHhC
Q 005388 603 LKSERAASIWTSTLQRTILTASPI---AG----FPKIQWRALDE-INAGVCDG----MTYEEIKKNMPE---EYEARKKD 667 (699)
Q Consensus 603 l~~~~~~~V~sSpL~RA~QTA~~i---~g----~~v~~~~~L~E-~~~G~~eG----~t~~ei~~~~P~---~~~~~~~d 667 (699)
+..++.|||||+.||+|||+++ .+ .++.+++.|+| +++|.|+| ++.+++.+.+|. .+..|..+
T Consensus 86 --~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E~~~~g~~eg~~~~~~~~el~~~~~~~~~~~~~~~~~ 163 (273)
T 3d4i_A 86 --GVRVTAVFASPALRCVQTAKHILEELKLEKKLKIRVEPGIFEWMKWEASKATLTFLTLEELKEANFNVDLDYRPALPR 163 (273)
T ss_dssp --TCCEEEEEECSSHHHHHHHHHHHHHHTCTTTSCEEECGGGSCCGGGSCTTGGGGSCCHHHHHHTTCCBCTTCCCSSCG
T ss_pred --CCCCCEEEECchHHHHHHHHHHHHHcCcCCCccEEEChhhhhhhhccccccCCCCCCHHHHHHhCCCCCcccccccCC
Confidence 5689999999999999999998 34 67889999999 99999999 689999887763 34444332
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 005388 668 KLRYRYPRGESYLDVIQRFAACPCSIWCLC 697 (699)
Q Consensus 668 ~~~~~~PgGES~~dv~~Rv~~~L~~L~~ea 697 (699)
..+|+|||+.++.+|+..+|++|....
T Consensus 164 ---~~~p~gEs~~~~~~R~~~~l~~l~~~~ 190 (273)
T 3d4i_A 164 ---CSLMPAESYDQYVERCAVSMGQIINTC 190 (273)
T ss_dssp ---GGCCTTCCHHHHHHHHHHHHHHHHTTS
T ss_pred ---CcCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999987643
No 24
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=99.85 E-value=1.1e-21 Score=202.60 Aligned_cols=136 Identities=21% Similarity=0.104 Sum_probs=109.7
Q ss_pred CCcceEEeccccccc----------------------------ccCCcccC---CCCCCHHHHHHHHHHHHHHHHHhccC
Q 005388 558 TPRPILLTRHGESRD----------------------------NVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSE 606 (699)
Q Consensus 558 ~~~~I~LVRHGeS~~----------------------------N~~~~~~G---D~pLTe~G~~QA~~La~~L~~~l~~~ 606 (699)
++++||||||||+.+ |..++++| |.|||+.|++||+.++++|.+. +.
T Consensus 3 ~~~~l~lvRHGet~~n~~~~w~~~~~~~~~y~~~d~n~p~~~pn~~~~~~g~~~D~pLt~~G~~QA~~l~~~L~~~--~~ 80 (263)
T 3c7t_A 3 SRRWVFALRHGERVDLTYGPWVPHCFENDTYVRKDLNLPLKLAHRAGGKGGYVKDTPLTRLGWFQAQLVGEGMRMA--GV 80 (263)
T ss_dssp -CEEEEEEECCCBHHHHSSSHHHHHEETTEECCCSTTSCSCCCCCTTHHHHHHHSCCBCHHHHHHHHHHHHHHHHT--TC
T ss_pred CceEEEEEeCCccccccchhhHhhhhccCccccccccCCccccccccCcccCCCCCCcCHHHHHHHHHHHHHHHHC--CC
Confidence 568999999999998 34555654 9999999999999999988754 56
Q ss_pred CCCEEEEcChHHHHHHHhhh---cC----CCccccccccc-cccCcC---CCCCHHHHHHhCHHHHHHHHhCCCCCCCCC
Q 005388 607 RAASIWTSTLQRTILTASPI---AG----FPKIQWRALDE-INAGVC---DGMTYEEIKKNMPEEYEARKKDKLRYRYPR 675 (699)
Q Consensus 607 ~~~~V~sSpL~RA~QTA~~i---~g----~~v~~~~~L~E-~~~G~~---eG~t~~ei~~~~P~~~~~~~~d~~~~~~Pg 675 (699)
.++.|||||+.||+|||+++ .+ .++.+++.|+| +++|.| +|++.+++.+.+|.. ..+...... ..|+
T Consensus 81 ~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E~~~~g~~~G~eg~~~~e~~~~~~~~-~~~~~~~~~-~~p~ 158 (263)
T 3c7t_A 81 SIKHVYASPALRCVETAQGFLDGLRADPSVKIKVEPGLFEFKNWHMPKGIDFMTPIELCKAGLNV-DMTYKPYVE-MDAS 158 (263)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTCCTTCCEEECGGGCCCCCTTSCCCCCCCCHHHHHHTTCCB-CTTCCCSCC-CCSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCcCCCCceEeccccccccccccccccccCCHHHHHHhcCCc-ccccccccc-CCCC
Confidence 89999999999999999998 34 77889999999 997555 889999999877641 111111112 2389
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh
Q 005388 676 GESYLDVIQRFAACPCSIWCLC 697 (699)
Q Consensus 676 GES~~dv~~Rv~~~L~~L~~ea 697 (699)
|||+.++.+|+..++++|...+
T Consensus 159 gEs~~~~~~Rv~~~l~~l~~~~ 180 (263)
T 3c7t_A 159 AETMDEFFKRGEVAMQAAVNDT 180 (263)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998654
No 25
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=99.83 E-value=5.4e-21 Score=197.43 Aligned_cols=134 Identities=20% Similarity=0.145 Sum_probs=113.3
Q ss_pred cceEEecccccccccCC------------cc---------------------cCCCCCCHHHHHHHHHHHHHHHHHhccC
Q 005388 560 RPILLTRHGESRDNVRG------------RI---------------------GGDTILSDAGEIYAKKLANFVEKRLKSE 606 (699)
Q Consensus 560 ~~I~LVRHGeS~~N~~~------------~~---------------------~GD~pLTe~G~~QA~~La~~L~~~l~~~ 606 (699)
++||||||||+.+|..+ .+ ..|+|||+.|++||+.++++|.+. +.
T Consensus 1 r~i~l~RHge~~~~~~~~~w~~~~~~~~~~y~~~d~~~p~~~~~r~~~~~~~d~D~pLT~~G~~QA~~l~~~L~~~--~~ 78 (264)
T 3mbk_A 1 RCLFVCRHGERMDVVFGKYWLSQCFDAKGRYIRTNLNMPHSLPQRSGGFRDYEKDAPITVFGCMQARLVGEALLES--NT 78 (264)
T ss_dssp CEEEEEECCCBHHHHHCTTGGGGTBCTTSCBCCCSTTSCSCCCCCTTCGGGGTTSCCBCHHHHHHHHHHHHHHHHT--TC
T ss_pred CeEEEEeCCcccccccchhHHHhhcCCCCceecCCCCCCCcccCCCCchhhcCCCCCCChHHHHHHHHHHHHHHHc--CC
Confidence 57999999998654321 11 138999999999999999998764 57
Q ss_pred CCCEEEEcChHHHHHHHhhh---cC----CCccccccccccccCcCCC-------CCHHHHHHhCHHHHHHHHhCCCCCC
Q 005388 607 RAASIWTSTLQRTILTASPI---AG----FPKIQWRALDEINAGVCDG-------MTYEEIKKNMPEEYEARKKDKLRYR 672 (699)
Q Consensus 607 ~~~~V~sSpL~RA~QTA~~i---~g----~~v~~~~~L~E~~~G~~eG-------~t~~ei~~~~P~~~~~~~~d~~~~~ 672 (699)
.++.|||||+.||+|||+++ ++ .++.+++.|+| +|.|+| ++.+++.+.+|.....|..+...+.
T Consensus 79 ~~d~v~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E--~g~~eg~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 156 (264)
T 3mbk_A 79 VIDHVYCSPSLRCVQTAHNILKGLQQDNHLKIRVEPGLFE--WTKWVAGSTLPAWIPPSELAAANLSVDTTYRPHIPVSK 156 (264)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTCTTTCCBEECGGGSC--CGGGSSSSSCCCCCCHHHHHHTTCCBCTTCCCSSCGGG
T ss_pred CcCEEEECcHHHHHHHHHHHHHHhcccCCCCeeEcCChHH--HhhhccccCCCCCCCHHHHHHhCCCcchhhccccCccc
Confidence 89999999999999999998 33 37889999999 689999 5899999988877777777666778
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHh
Q 005388 673 YPRGESYLDVIQRFAACPCSIWCLC 697 (699)
Q Consensus 673 ~PgGES~~dv~~Rv~~~L~~L~~ea 697 (699)
+|+|||+.++..|+..++++|...+
T Consensus 157 ~p~gEs~~~~~~R~~~~l~~l~~~~ 181 (264)
T 3mbk_A 157 LAISESYDTYINRSFQVTKEIISEC 181 (264)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999998764
No 26
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural genomics, isomerase, structural GE consortium, SGC; 2.40A {Plasmodium falciparum}
Probab=99.74 E-value=9.3e-19 Score=175.81 Aligned_cols=119 Identities=20% Similarity=0.180 Sum_probs=72.5
Q ss_pred CCCcceEEecccccccccCCcccCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---c-CCCcc
Q 005388 557 LTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A-GFPKI 632 (699)
Q Consensus 557 ~~~~~I~LVRHGeS~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~-g~~v~ 632 (699)
+.+++|||||||++.+|..+ -..|.|||+.|++||+.++++|+..+....++.|||||+.||+|||+++ . +.++.
T Consensus 19 ~~~~~i~LvRHGet~~n~~~-g~~d~pLt~~G~~QA~~l~~~L~~~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 97 (214)
T 3eoz_A 19 NTTKHIILVRHGQYERRYKD-DENSKRLTKEGCKQADITGKKLKDILNNKKVSVIYHSDMIRAKETANIISKYFPDANLI 97 (214)
T ss_dssp CCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSHHHHHHHHHHHTTCTTSEEE
T ss_pred CCccEEEEEeCCccccCccC-CcCCCCcCHHHHHHHHHHHHHHHHhcccCCCCEEEECCcHHHHHHHHHHHHHCCCCCee
Confidence 44589999999999999764 1229999999999999999999877656689999999999999999999 2 56788
Q ss_pred ccccccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005388 633 QWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWCL 696 (699)
Q Consensus 633 ~~~~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~e 696 (699)
+++.|+| |+++.+. + .+ ....|+|||+.++..|+..+++++...
T Consensus 98 ~~~~L~E-------G~~~~~~----~--------~~-~~~~~~gEs~~~~~~R~~~~l~~l~~~ 141 (214)
T 3eoz_A 98 NDPNLNE-------GTPYLPD----P--------LP-RHSKFDAQKIKEDNKRINKAYETYFYK 141 (214)
T ss_dssp ECGGGCC-------CC-----------------------------------CCHHHHHHHHCSC
T ss_pred eCccccC-------CCCCCCC----C--------Cc-ccCCCCCccHHHHHHHHHHHHHHHHHh
Confidence 8999999 5554411 0 01 122378999999999999999998654
No 27
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate mutase family member 5, BXLBV68, MGC protein, structural genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo sapiens} PDB: 3o0t_A
Probab=99.72 E-value=1.1e-17 Score=165.88 Aligned_cols=117 Identities=25% Similarity=0.254 Sum_probs=89.5
Q ss_pred CCCCcceEEecccccccccCCcccCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---c-CCCc
Q 005388 556 HLTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A-GFPK 631 (699)
Q Consensus 556 ~~~~~~I~LVRHGeS~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~-g~~v 631 (699)
.+.+++|||||||++ |..++++.|.|||+.|++||+.++++|... +.+++.|||||+.||+|||+++ . +.++
T Consensus 7 ~~~~~~i~lvRHGe~--n~~g~~~~D~pLt~~G~~qA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~ 82 (202)
T 3mxo_A 7 AKATRHIFLIRHSQY--HVDGSLEKDRTLTPLGREQAELTGLRLASL--GLKFNKIVHSSMTRAIETTDIISRHLPGVCK 82 (202)
T ss_dssp CSSCEEEEEEECCCB--CTTCSSGGGCCBCHHHHHHHHHHHHHHHTT--CCCCSEEEEESSHHHHHHHHHHHHTSTTCCE
T ss_pred CCCceEEEEEeCccc--cCCCCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhCCCCCe
Confidence 345689999999994 767777679999999999999999988653 4689999999999999999999 3 6788
Q ss_pred cccccccccccCcCCCCCHHHHHHhCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005388 632 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRFAACPCSIWCL 696 (699)
Q Consensus 632 ~~~~~L~E~~~G~~eG~t~~ei~~~~P~~~~~~~~d~~~~~~PgGES~~dv~~Rv~~~L~~L~~e 696 (699)
.+++.|+| |+++++ .+| +..|. +++|++.++.+|+..+++++...
T Consensus 83 ~~~~~L~E-------g~~~~~---~~~--~~~w~--------~~~es~~~~~~R~~~~~~~~~~~ 127 (202)
T 3mxo_A 83 VSTDLLRE-------GAPIEP---DPP--VSHWK--------PEAVQYYEDGARIEAAFRNYIHR 127 (202)
T ss_dssp EEEGGGCC-------CCC---------------------------CTHHHHHHHHHHHHHHHTTC
T ss_pred eeCccccc-------CCccCC---CCc--HHhhc--------cCCcccccHHHHHHHHHHHHHHh
Confidence 89999999 445432 111 33343 57899999999999999998764
No 28
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=154.29 Aligned_cols=90 Identities=16% Similarity=0.241 Sum_probs=79.0
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCcccccccccc----CCCceEEEEecCCCCCceeeEEEE---ecCC
Q 005388 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE----SASMWELSFVVPPNHETLDFKFLL---KPKY 99 (699)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~----~~~~W~~~l~~~~~~~~leyKf~~---~~~~ 99 (699)
-+.+.-|+|+|++|+ ..++.++|+||+++||+||++||++|... ..+.|.+++++|.. .+|||||++ ++.+
T Consensus 5 s~~~v~V~F~v~~~~-~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~-~~~eYKyvi~~~~~~~ 82 (131)
T 2z0b_A 5 SSGPSQVAFEIRGTL-LPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRG-VSVQYRYFKGYFLEPK 82 (131)
T ss_dssp -CCCEEEEEEEECCC-CTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTT-CCEEEEEEEEEEECCC
T ss_pred CCCeEEEEEEEeeec-CCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCC-CcEEEEEEEEeecCcc
Confidence 346789999999988 88999999999999999999999999999 89999999999664 679999999 7753
Q ss_pred CC------CceeeccCC-CccccCCC
Q 005388 100 GN------GPCIVEEGP-NRLLTGGA 118 (699)
Q Consensus 100 ~~------~~~~wE~g~-NR~l~~~~ 118 (699)
+. ....||+|+ ||+|..+.
T Consensus 83 ~~~g~~~v~~~~WE~g~~NR~l~~~~ 108 (131)
T 2z0b_A 83 TIGGPCQVIVHKWETHLQPRSITPLE 108 (131)
T ss_dssp C----CEEEEEEECCSSCCEEECCCS
T ss_pred ccCCccccceeeECCCCCCcEEecCC
Confidence 33 556999999 99999874
No 29
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=99.70 E-value=1.8e-17 Score=149.93 Aligned_cols=90 Identities=20% Similarity=0.392 Sum_probs=78.4
Q ss_pred CceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCC----CceEEEEecCCCCCceeeEEEEecCCCCCc
Q 005388 28 GGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESA----SMWELSFVVPPNHETLDFKFLLKPKYGNGP 103 (699)
Q Consensus 28 ~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~----~~W~~~l~~~~~~~~leyKf~~~~~~~~~~ 103 (699)
+++.-|+|+|.+| +..++.++|+||++.||+||++||++|+..++ +.|.+++++|.. ..|||||++++. +..
T Consensus 4 ~~~v~V~F~v~~~-t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~-~~~eYKy~v~~~--~g~ 79 (108)
T 1ac0_A 4 PTAVAVTFDLTAT-TTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAG-ESFEYKFIRIES--DDS 79 (108)
T ss_dssp CCCCCEEEEEECC-CCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSS-SCEECCCEECCS--SSC
T ss_pred CCeEEEEEEEeeE-CCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCC-CeEEEEEEEEcC--CCC
Confidence 5678899999998 78899999999999999999999999999855 999999999654 569999999763 334
Q ss_pred eeeccCCCccccCCCCCC
Q 005388 104 CIVEEGPNRLLTGGALQG 121 (699)
Q Consensus 104 ~~wE~g~NR~l~~~~~~~ 121 (699)
+.||+|+||.+..|....
T Consensus 80 ~~WE~g~nR~~~~p~~~~ 97 (108)
T 1ac0_A 80 VEWESDPNREYTVPQACG 97 (108)
T ss_dssp CCCCCSSCCEECCCSSSS
T ss_pred EEeccCCCEEEECCCCCC
Confidence 569999999999887544
No 30
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=99.57 E-value=6.6e-15 Score=141.32 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=56.1
Q ss_pred cceEEecccccccccCCcccCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh
Q 005388 560 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI 626 (699)
Q Consensus 560 ~~I~LVRHGeS~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i 626 (699)
|+|||||||++.+|..+ ..|.|||+.|++||+.++++|... +..++.|||||+.||+|||+++
T Consensus 1 m~l~LvRHg~t~~n~~g--~~d~pLt~~G~~qA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i 63 (161)
T 1ujc_A 1 MQVFIMRHGDAALDAAS--DSVRPLTTNGCDESRLMANWLKGQ--KVEIERVLVSPFLRAEQTLEEV 63 (161)
T ss_dssp CEEEEEECCCBCSCSSS--GGGCCBCHHHHHHHHHHHHHHHHT--TCCCCEEEECSSHHHHHHHHHH
T ss_pred CEEEEEeCCCcCCCCCC--CCcCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEeCchHHHHHHHHHH
Confidence 57999999999999753 239999999999999999998764 4689999999999999999998
No 31
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=99.56 E-value=5.1e-15 Score=172.59 Aligned_cols=96 Identities=26% Similarity=0.317 Sum_probs=85.8
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccc-cccc---cCCCceEEEEecCCCCCceeeEEEEecCCCCC
Q 005388 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKAL-AMGR---ESASMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (699)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal-~M~~---~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~ 102 (699)
.+++.-|+|+|++|++..++.|+|+||+++||+||++||+ +|+. .+.+.|.+++++|. ..+|||||++++.+
T Consensus 580 ~~~~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~-~~~~eyK~~~~~~~--- 655 (683)
T 3bmv_A 580 TGNQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPA-GTTIQFKFIKKNGN--- 655 (683)
T ss_dssp SSSEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEET-TCEEEEEEEEESSS---
T ss_pred CCCeEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccCCCCCCcEEEEEEeCC-CCcEEEEEEEEcCC---
Confidence 4679999999999999999999999999999999999999 9999 89999999999965 47899999999853
Q ss_pred ceeeccCCCccccCCCCCCCceEE
Q 005388 103 PCIVEEGPNRLLTGGALQGDSRSA 126 (699)
Q Consensus 103 ~~~wE~g~NR~l~~~~~~~~~~~~ 126 (699)
.+.||+|+||++..|.....++.+
T Consensus 656 ~~~WE~g~Nr~~~~~~~~~~~~~~ 679 (683)
T 3bmv_A 656 TITWEGGSNHTYTVPSSSTGTVIV 679 (683)
T ss_dssp CCEECCSSCEEEECCSSSCEEEEE
T ss_pred ceEecCCCCeeEECCCCCceEEEe
Confidence 789999999999999865444433
No 32
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=99.56 E-value=5.4e-15 Score=172.51 Aligned_cols=96 Identities=27% Similarity=0.354 Sum_probs=85.9
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccc-cccc---cCCCceEEEEecCCCCCceeeEEEEecCCCCC
Q 005388 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKAL-AMGR---ESASMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (699)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal-~M~~---~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~ 102 (699)
.+++.-|+|+|++|++..++.|+|+||+++||+||++||+ +|.. .+.+.|.+++++|. ..+|||||++++.+
T Consensus 583 ~~~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~-~~~~eyK~~~~~~~--- 658 (686)
T 1d3c_A 583 SGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPA-GKTIEFKFLKKQGS--- 658 (686)
T ss_dssp SSSEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSSSSCTTCEEEEEEEET-TCEEEEEEEEEETT---
T ss_pred CCCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCeEEEEEEeCC-CCcEEEEEEEEcCC---
Confidence 3579999999999999999999999999999999999999 9999 99999999999965 47899999999853
Q ss_pred ceeeccCCCccccCCCCCCCceEE
Q 005388 103 PCIVEEGPNRLLTGGALQGDSRSA 126 (699)
Q Consensus 103 ~~~wE~g~NR~l~~~~~~~~~~~~ 126 (699)
.+.||+|+||++..|.....++..
T Consensus 659 ~~~WE~g~Nr~~~~~~~~~~~~~~ 682 (686)
T 1d3c_A 659 TVTWEGGSNHTFTAPSSGTATINV 682 (686)
T ss_dssp EEEECCSSCEEEECCSSSCEEEEE
T ss_pred ceEecCCCCeEEECCCCCcEEEEE
Confidence 889999999999999866544433
No 33
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=99.56 E-value=5.7e-15 Score=172.11 Aligned_cols=97 Identities=27% Similarity=0.357 Sum_probs=86.0
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccc-cccc---cCCCceEEEEecCCCCCceeeEEEEecCCCCC
Q 005388 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKAL-AMGR---ESASMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (699)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal-~M~~---~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~~ 102 (699)
.+++.-|+|+|++|++..+++|+|+||+++||+||++||+ +|.. .+.+.|.+++++|. ..+|||||++++. ..
T Consensus 576 ~~~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~-~~~~eyK~v~~~~--~~ 652 (680)
T 1cyg_A 576 TNDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPE-GKTIEFKFIKKDS--QG 652 (680)
T ss_dssp SSCEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEES-SCEEEEEEEEECT--TS
T ss_pred CCCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCcEEEEEEeCC-CCcEEEEEEEEeC--CC
Confidence 3579999999999999999999999999999999999999 9999 99999999999965 4789999999994 34
Q ss_pred ceeeccCCCccccCCCCCCCceEE
Q 005388 103 PCIVEEGPNRLLTGGALQGDSRSA 126 (699)
Q Consensus 103 ~~~wE~g~NR~l~~~~~~~~~~~~ 126 (699)
.+.||+|+||++..|.....++..
T Consensus 653 ~~~WE~g~Nr~~~~~~~~~~~~~~ 676 (680)
T 1cyg_A 653 NVTWESGSNHVYTTPTNTTGKIIV 676 (680)
T ss_dssp CEEECCSSCEEEECCSSSCEEEEE
T ss_pred CeEeCCCCCeeEECCCCCcEEEEE
Confidence 589999999999999866544443
No 34
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=99.54 E-value=8.1e-15 Score=142.31 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=64.2
Q ss_pred CcceEEecccccccccCCcccC--CCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cCCC--c
Q 005388 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFP--K 631 (699)
Q Consensus 559 ~~~I~LVRHGeS~~N~~~~~~G--D~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g~~--v 631 (699)
|++|||||||++.+|..+ +| |.|||+.|++||+.++++|.+. ...++.|||||+.||+|||+++ .+.+ +
T Consensus 8 M~~l~LvRHg~t~~n~~~--~g~~d~pLt~~G~~qa~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 83 (173)
T 2rfl_A 8 PTRVYLLRHAKAAWAAPG--ERDFDRGLNEAGFAEAEIIADLAADR--RYRPDLILSSTAARCRQTTQAWQRAFNEGIDI 83 (173)
T ss_dssp CCEEEEEECCCBCC-------CGGGCCBCHHHHHHHHHHHHHHHHH--TCCCSEEEECSSHHHHHHHHHHHHHHC--CEE
T ss_pred ccEEEEEeCCCcCCCCCC--CCcccCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEECCHHHHHHHHHHHHHhcCCCCCe
Confidence 579999999999999765 44 8999999999999999998765 5689999999999999999998 4554 5
Q ss_pred ccccccccccc
Q 005388 632 IQWRALDEINA 642 (699)
Q Consensus 632 ~~~~~L~E~~~ 642 (699)
..++.|.|.+.
T Consensus 84 ~~~~~l~e~~~ 94 (173)
T 2rfl_A 84 VYIDEMYNARS 94 (173)
T ss_dssp EECGGGSSCSS
T ss_pred EECHhHhcCCH
Confidence 67788888764
No 35
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A
Probab=99.45 E-value=1.4e-13 Score=155.58 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=84.0
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCcccc-ccccccCCC-ceEEEEecCCCCCceeeEEEEecCCCCCce
Q 005388 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKA-LAMGRESAS-MWELSFVVPPNHETLDFKFLLKPKYGNGPC 104 (699)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~ka-l~M~~~~~~-~W~~~l~~~~~~~~leyKf~~~~~~~~~~~ 104 (699)
.+.+.-|+|+|++|+...+|.|+|+||++.||+||++|| ++|+..+.+ .|.+++++|.. .+|||||++++. +....
T Consensus 416 t~~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~~~p~~W~~~v~lp~~-~~~eYKyv~~~~-~g~v~ 493 (516)
T 1vem_A 416 GVTPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAE-RNIEFKAFIKSK-DGTVK 493 (516)
T ss_dssp SCCEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEETTTTEEEEEEEEETT-CCEEEEEEEECT-TSCEE
T ss_pred ccCccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccCCCCCEEEEEEEECCC-CcEEEEEEEEeC-CCCee
Confidence 367899999999999999999999999999999999999 799998887 99999999764 579999999873 33444
Q ss_pred eeccCCCccccCCCCCCCceEE
Q 005388 105 IVEEGPNRLLTGGALQGDSRSA 126 (699)
Q Consensus 105 ~wE~g~NR~l~~~~~~~~~~~~ 126 (699)
.||.|+||++..|... +++++
T Consensus 494 ~WE~g~NR~~~~p~~~-~~~~~ 514 (516)
T 1vem_A 494 SWQTIQQSWNPVPLKT-TSHTS 514 (516)
T ss_dssp EECSSCEEESSCCSSC-CEEEE
T ss_pred EEeCCCCEEEecCCCC-CeEEe
Confidence 8999999999998866 55443
No 36
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=99.39 E-value=8.7e-13 Score=151.50 Aligned_cols=89 Identities=18% Similarity=0.293 Sum_probs=78.8
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCC----CceEEEEecCCCCCceeeEEEEecCCCCC
Q 005388 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESA----SMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (699)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~----~~W~~~l~~~~~~~~leyKf~~~~~~~~~ 102 (699)
.+++.-|+|+|+++ +..+|.|+|+||++.||+||++||++|+..++ +.|.+++++|. ...|||||++++.+ .
T Consensus 493 ~~~~v~v~F~v~~~-t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~~t~~~~~W~~~v~lp~-~~~~eYKyvv~~~~--g 568 (599)
T 2vn4_A 493 TPTSVAVTFHELVS-TQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEA-GDVVEYKYINVGQD--G 568 (599)
T ss_dssp CCSEEEEEEEEECC-CCTTCEEEEEESSGGGTTTCTTTSEECBCTTCBTTBCEEEEEEEEET-TCEEEEEEEEECTT--C
T ss_pred CCCeEEEEEEEeEE-cCCCCEEEEEecccCCCCcChhheeecccccCCCCCCcEEEEEEcCC-CCcEEEEEEEECCC--C
Confidence 35678999999997 88899999999999999999999999999986 99999999955 45799999998843 3
Q ss_pred ceeeccCCCccccCCCC
Q 005388 103 PCIVEEGPNRLLTGGAL 119 (699)
Q Consensus 103 ~~~wE~g~NR~l~~~~~ 119 (699)
.+.||.|+||++..|..
T Consensus 569 ~~~WE~g~NR~~~~p~~ 585 (599)
T 2vn4_A 569 SVTWESDPNHTYTVPAV 585 (599)
T ss_dssp CEEECCSSCEEEECCCC
T ss_pred ceEeCCCCCEEEecCcc
Confidence 46699999999998865
No 37
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.34 E-value=3e-12 Score=140.94 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=94.9
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~ 427 (699)
...|.+|+|+|+|||||||+|++|++.+++..++.|.+ + .+..+...+..++.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-----~-------------------~~~~~~~~~~~~l~--- 307 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-----G-------------------SWQRCVSSCQAALR--- 307 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-----C-------------------SHHHHHHHHHHHHH---
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-----H-------------------HHHHHHHHHHHHHh---
Confidence 34678999999999999999999999887665554443 1 12223333444333
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHH
Q 005388 428 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (699)
Q Consensus 428 ~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri 506 (699)
.|..||+|++|..+..|..+.++ .+.++.+.+|.+.|+ .+++.+|+..|........ . .++.++
T Consensus 308 -----~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~-~e~l~~R~~~R~~~~~~~~-~-~~~~~~------- 372 (416)
T 3zvl_A 308 -----QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT-IEQARHNNRFREMTDPSHA-P-VSDMVM------- 372 (416)
T ss_dssp -----TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC-HHHHHHHHHHHHHHCTTCC-C-CCHHHH-------
T ss_pred -----cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC-HHHHHHHHHhhcccCCCcC-C-CCHHHH-------
Confidence 68899999999999999999888 566777777777665 7788888877765322222 2 344443
Q ss_pred HhhhhhccCCCC--C-CceEEeec
Q 005388 507 ANYEKVYEPVDE--G-SYIKMIDM 527 (699)
Q Consensus 507 ~~y~~~yEpl~e--~-~yik~in~ 527 (699)
..+.+.||+++. + .+|..+|+
T Consensus 373 ~~~~~~~e~P~~~E~fd~v~~v~~ 396 (416)
T 3zvl_A 373 FSYRKQFEPPTLAEGFLEILEIPF 396 (416)
T ss_dssp HHHHHHCCCCCGGGTCSEEEEECC
T ss_pred HHHHHhcCCCCcccCCcEEEEEec
Confidence 455556777763 3 67777776
No 38
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=99.34 E-value=1e-12 Score=128.15 Aligned_cols=65 Identities=26% Similarity=0.248 Sum_probs=55.9
Q ss_pred cceEEecccccccccCCcccCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh
Q 005388 560 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI 626 (699)
Q Consensus 560 ~~I~LVRHGeS~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i 626 (699)
|+|||||||++.+|..+....|.|||+.|++||+.++++|.+. +..++.|||||+.||+|||+.+
T Consensus 1 M~l~LvRHg~a~~~~~~~~d~d~pLt~~G~~qA~~~~~~L~~~--~~~~~~i~sSp~~Ra~qTa~~l 65 (172)
T 3f2i_A 1 MELYLIRHGIAEAQKTGIKDEERELTQEGKQKTEKVAYRLVKL--GRQFDLIVTSPLIRARQTAEIL 65 (172)
T ss_dssp CEEEEEECCCBCCC---CCGGGCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHH
T ss_pred CEEEEEcCCCcCccccCCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHH
Confidence 6899999999999865433338999999999999999999765 5789999999999999999998
No 39
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=99.34 E-value=1e-13 Score=157.03 Aligned_cols=91 Identities=21% Similarity=0.294 Sum_probs=0.0
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCcccccccc-ccCCCceEEEEecCCCCCceeeEEEEecCCCC-Cce
Q 005388 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMG-RESASMWELSFVVPPNHETLDFKFLLKPKYGN-GPC 104 (699)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~-~~~~~~W~~~l~~~~~~~~leyKf~~~~~~~~-~~~ 104 (699)
.+.+.-|+|+|.+++...++.|+|+||++.||+||++||++|+ ..+.+.|.+++++|. ..+|||||++++.+.. ..+
T Consensus 427 ~~~~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~W~~~v~lp~-~~~~eyKy~~~~~~~~~~~~ 505 (527)
T 1gcy_A 427 PGALVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDTSGYPTWKGSIALPA-GQNEEWKCLIRNEANATQVR 505 (527)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCEEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccCCCCCeEEEEEEeCC-CCcEEEEEEEEeCCCCccee
Confidence 3568999999999999999999999999999999999999999 578999999999976 4579999999875443 468
Q ss_pred eeccCCCccccCCC
Q 005388 105 IVEEGPNRLLTGGA 118 (699)
Q Consensus 105 ~wE~g~NR~l~~~~ 118 (699)
.||.|+||++..|.
T Consensus 506 ~We~g~nr~~~~~~ 519 (527)
T 1gcy_A 506 QWQGGANNSLTPSE 519 (527)
T ss_dssp --------------
T ss_pred EecCCCCeeEECCC
Confidence 89999999999774
No 40
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.33 E-value=2.9e-12 Score=122.27 Aligned_cols=121 Identities=14% Similarity=0.069 Sum_probs=78.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHH-HHhhcCCCceEeehhhHHHHhhCCCCC--CCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTR-YLRWLGHDTKHFNVGKYRRLKHGVNQS--ADFFRADNPEGMEARNEVAALAMEDMI 427 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~-~L~~~gi~tdv~~~gdyRr~~~g~~~~--~~f~~~~~~~~~~~~~~vA~~~l~dl~ 427 (699)
|.+|+|+|+|||||||+|+.|++ .++ ..+++.|.+|+...+.... ..| ....-........ +.+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~-----~~~i~~d~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~ 69 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG-----FYNINRDDYRQSIMAHEERDEYKY----TKKKEGIVTGMQF---DTAK 69 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT-----EEEECHHHHHHHHTTSCCGGGCCC----CHHHHHHHHHHHH---HHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC-----cEEecHHHHHHHhhCCCccchhhh----chhhhhHHHHHHH---HHHH
Confidence 57899999999999999999998 333 3456667888865542111 112 1211111111111 1222
Q ss_pred HHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 428 SWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 428 ~~L~--~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
..+. ..|..||+|+++.....|+.+.++ ...++++++|.+.|+ .+++.+|+..|..
T Consensus 70 ~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~ 128 (181)
T 1ly1_A 70 SILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVKRNSKRGT 128 (181)
T ss_dssp HHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCC-HHHHHHHHTTCGG
T ss_pred HHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHhcccc
Confidence 3342 468999999999999999988877 455666556666565 7888888876643
No 41
>4hbz_A Putative phosphohistidine phosphatase, SIXA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HP_PGM_LIKE; HET: PGE; 1.55A {Nakamurella multipartita}
Probab=99.32 E-value=1.2e-12 Score=129.23 Aligned_cols=77 Identities=21% Similarity=0.167 Sum_probs=62.7
Q ss_pred CCcceEEecccccccccCCcccCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh-cCCCcccccc
Q 005388 558 TPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI-AGFPKIQWRA 636 (699)
Q Consensus 558 ~~~~I~LVRHGeS~~N~~~~~~GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i-~g~~v~~~~~ 636 (699)
.+++|||||||+++|+..+ .|.|||++|++||+.++++|++. +..++.|||||+.||+|||+.+ ...++...+.
T Consensus 18 ~~k~L~L~RHaka~~~~~D---~dRpLt~~G~~~a~~~~~~l~~~--~~~~d~i~~Spa~Ra~qTa~~~~~~~~~~~~~~ 92 (186)
T 4hbz_A 18 GARTLVLMRHAAAGSAVRD---HDRPLTPDGVRAATAAGQWLRGH--LPAVDVVVCSTAARTRQTLAATGISAQVRYRDE 92 (186)
T ss_dssp CCEEEEEEECCCBCCCSSG---GGCCBCHHHHHHHHHHHHHHHHH--SCCCCEEEEESSHHHHHHHHHHTCCSEEEEEGG
T ss_pred CCcEEEEEECCccCCCCCC---CCCCCCHHHHHHHHHhhhHhhhc--ccCCCccccCcchhHHHHHHhhccccccccccc
Confidence 3578999999999986432 28899999999999999999877 7789999999999999999988 3344444444
Q ss_pred ccc
Q 005388 637 LDE 639 (699)
Q Consensus 637 L~E 639 (699)
|.+
T Consensus 93 ly~ 95 (186)
T 4hbz_A 93 LYG 95 (186)
T ss_dssp GTT
T ss_pred ccc
Confidence 433
No 42
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=99.31 E-value=3.2e-12 Score=149.14 Aligned_cols=90 Identities=24% Similarity=0.364 Sum_probs=80.6
Q ss_pred CCceEEEEEEEEecccC-CCcEEEEecCCCccCCCCc------cccc-cccccCCCceEEEEecCCCCCceeeEEEEecC
Q 005388 27 AGGQFYVSLKMVNIKLK-GDLIPHVYGSVPLVGSWDS------SKAL-AMGRESASMWELSFVVPPNHETLDFKFLLKPK 98 (699)
Q Consensus 27 ~~~~~~v~lkv~aP~l~-~~~~l~l~Gs~~~LG~W~~------~kal-~M~~~~~~~W~~~l~~~~~~~~leyKf~~~~~ 98 (699)
.+.+.-|+|+|++++.. .+|.|+|+||++.||+|++ ++|+ +|...+.+.|.+++++|.. .+|||||++++.
T Consensus 578 ~~~~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~~~~~~W~~~v~l~~~-~~~eyKy~~~~~ 656 (686)
T 1qho_A 578 SGTQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAG-KTIQFKFFIKRA 656 (686)
T ss_dssp SSSEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETT-CEEEEEEEEECT
T ss_pred CCCeEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhcccccCCCCcEEEEEEeCCC-CeEEEEEEEEcC
Confidence 35788999999999998 9999999999999999999 9999 9999999999999999764 579999999875
Q ss_pred CCCCceeeccCCCccccCCCC
Q 005388 99 YGNGPCIVEEGPNRLLTGGAL 119 (699)
Q Consensus 99 ~~~~~~~wE~g~NR~l~~~~~ 119 (699)
+. .+.||.|+||++..|..
T Consensus 657 ~~--~~~We~~~nr~~~~~~~ 675 (686)
T 1qho_A 657 DG--TIQWENGSNHVATTPTG 675 (686)
T ss_dssp TS--CEEECCSSCEEEECCSS
T ss_pred CC--CEEeCCCCCeeEECCCC
Confidence 43 45999999999998864
No 43
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.28 E-value=9.5e-11 Score=113.25 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=74.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
+|.+|+|+|+|||||||+|+.|+++|++ .+++.|++|+...+.. .. ............+...+.+....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~-----~~i~~D~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~ 72 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRL-----PLLSKDAFKEVMFDGL---GW---SDREWSRRVGATAIMMLYHTAAT 72 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEHHHHHHHHHHHH---CC---CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCC-----eEecHHHHHHHHHHhc---Cc---cchHHHHHhhHHHHHHHHHHHHH
Confidence 5789999999999999999999999864 3566777777543311 01 11222222222222222222222
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
+.+.|..||+|+++.....+..+.++ ...+.+.++|.+.|+ ++++.+|+..|..
T Consensus 73 ~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~-~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 73 ILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVAS-GDVLVERILSRIA 127 (193)
T ss_dssp HHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECC-HHHHHHHHHHHHH
T ss_pred HHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHhcC
Confidence 23358889999999433344455555 334555566666665 7888999877754
No 44
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.28 E-value=1.3e-12 Score=141.01 Aligned_cols=87 Identities=16% Similarity=0.104 Sum_probs=71.8
Q ss_pred CCCcceEEecccccccccCCccc-CCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEcChHHHHHHHhhh---cCCCcc
Q 005388 557 LTPRPILLTRHGESRDNVRGRIG-GDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKI 632 (699)
Q Consensus 557 ~~~~~I~LVRHGeS~~N~~~~~~-GD~pLTe~G~~QA~~La~~L~~~l~~~~~~~V~sSpL~RA~QTA~~i---~g~~v~ 632 (699)
..+++|||||||++.+|...... .|.|||+.|++||+.++++|. ...++.|||||+.||+|||+++ ++.++.
T Consensus 180 ~~~~~l~lvRHg~~~~~~~~~~~~~d~pLt~~G~~qa~~~~~~l~----~~~~d~i~sSp~~Ra~~Ta~~~~~~~~~~~~ 255 (364)
T 3fjy_A 180 ATAQNLLIVRHAKAESRKSWKGTDANRPITPKGAAMAFALNRELA----CFNPTRLATSPWLRCQETLQVLSWQTERPME 255 (364)
T ss_dssp GGCEEEEEEECCCBCCTTTCCSCSTTCCBCHHHHHHHHHHHHHHG----GGCEEEEEECSSHHHHHHHHHHHHHHTCCEE
T ss_pred CcceeEEEEeccccccccccCCCcCcCCCCHHHHHHHHHHHHHhc----cCCCCEEEEcChHHHHHHHHHHHHhcCCCeE
Confidence 35689999999999977542111 288999999999999998875 3579999999999999999998 578888
Q ss_pred ccccccccccCcCCC
Q 005388 633 QWRALDEINAGVCDG 647 (699)
Q Consensus 633 ~~~~L~E~~~G~~eG 647 (699)
.++.|+|..++...+
T Consensus 256 ~~~~l~e~~~~~~~~ 270 (364)
T 3fjy_A 256 HINTLTEDAFAEHPA 270 (364)
T ss_dssp ECGGGSHHHHHHCHH
T ss_pred ECcccCccccccCHH
Confidence 899999987765433
No 45
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.24 E-value=7.8e-11 Score=121.25 Aligned_cols=118 Identities=19% Similarity=0.131 Sum_probs=82.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
++.+|+|+|+|||||||+|+.|+++|...|....+++.|.+|....+ | ....+..+... .... +...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~------~-~~~~e~~~~~~---~~~~---i~~~ 69 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV------W-KEKYEEFIKKS---TYRL---IDSA 69 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS------C-CGGGHHHHHHH---HHHH---HHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh------h-hHHHHHHHHHH---HHHH---HHHH
Confidence 46799999999999999999999998877777666688888764332 2 22233322211 1111 1122
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
+. . ..||+|+++.....|+.+.++ ...+.+.++|.+.|+ ++++.+|+..|.
T Consensus 70 l~-~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~-~e~~~~R~~~R~ 121 (260)
T 3a4m_A 70 LK-N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKAS-LDVLIRRNIERG 121 (260)
T ss_dssp HT-T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECC-HHHHHHHHHHTT
T ss_pred hh-C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHHhCC
Confidence 33 3 789999999999999999887 556666666666666 777888887653
No 46
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.20 E-value=1.4e-10 Score=112.33 Aligned_cols=121 Identities=19% Similarity=0.244 Sum_probs=82.0
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
.++.+|+++|+|||||||+++.|++.|...+.+..+++.|.+|.... ....|...++...++....++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~-------- 79 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVS---EGAGFTREERLRHLKRIAWIAR-------- 79 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTT---TTCCCCHHHHHHHHHHHHHHHH--------
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHh---hccCCChhhHHHHHHHHHHHHH--------
Confidence 35789999999999999999999999998888888888887765332 2223332222222222222222
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHH
Q 005388 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRL 481 (699)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~ 481 (699)
.+.+.|.+||+|+++.....|+.+.++ ...+.+.+.|.+.|+ ++++.+|+..
T Consensus 80 ~~~~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~-~e~~~~R~~~ 132 (186)
T 2yvu_A 80 LLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKAS-LEEVIRRDPK 132 (186)
T ss_dssp HHHTTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHCHH
T ss_pred HHHhCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCC-HHHHHHhhhh
Confidence 233468999999999888888888887 444444545555555 7777777643
No 47
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.19 E-value=1.5e-10 Score=120.44 Aligned_cols=122 Identities=14% Similarity=0.071 Sum_probs=80.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCC--CCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--ADFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~--~~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
|.+|+|+|+|||||||+|+.|++.+ ....+++.|++|+...+.... ..|+ ...-..... .+.+.+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r~~~~~~~~g~~~~~~----~~~~~~~~~---~~~~~~~~ 70 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQSIMAHEERDEYKYT----KKKEGIVTG---MQFDTAKS 70 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHHHHTTSCCCC---CC----HHHHHHHHH---HHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHHHHhccCCcccccccc----hhhhhHHHH---HHHHHHHH
Confidence 5789999999999999999999863 123567778888865542111 1222 111111111 11122233
Q ss_pred HHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 429 WMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 429 ~L~--~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
.+. ..|..||+|+++.....|+.+.++ .+.++++++|.+.|+ .+++.+|+..|..
T Consensus 71 ~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~e~~~~R~~~R~~ 128 (301)
T 1ltq_A 71 ILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVKRNSKRGT 128 (301)
T ss_dssp HTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCC-HHHHHHHHHHCGG
T ss_pred HHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECC-HHHHHHHHHhccC
Confidence 342 468999999999999999999887 566777666766664 7888888877653
No 48
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.17 E-value=2.8e-10 Score=130.30 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=99.6
Q ss_pred CCCCCccchhhHHHHHhhhcCCCCCccEEEEEEccCCCChhHHHHHHHHHHhhcC-CCceEeehhhHHHHhhCCCCCCCC
Q 005388 325 NSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNVGKYRRLKHGVNQSADF 403 (699)
Q Consensus 325 ~~~p~~~~~~~~~~l~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~g-i~tdv~~~gdyRr~~~g~~~~~~f 403 (699)
...|.+......+........+.++++++|+|+|+|||||||+|+.|+++|++.| ..+..++.|.+|+. ......|
T Consensus 370 ~~~p~w~~~~eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~---l~~~~~f 446 (573)
T 1m8p_A 370 AHIPEWFSYPEVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHE---LSSELGF 446 (573)
T ss_dssp CCCCTTTSCHHHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHH---TCTTCCC
T ss_pred CCCCcccccccccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHH---hccccCC
Confidence 3444444333345555555655678899999999999999999999999999888 78888988888774 3344556
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHH
Q 005388 404 FRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 479 (699)
Q Consensus 404 ~~~~~~~~~~~~~~vA~~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI 479 (699)
...++.+.++++.++++..++ .|.+||+|.+++.+..|+.++++ .+.+ .++.|.+.|+ .+++.+|.
T Consensus 447 ~~~er~~~i~ri~~v~~~~~~--------~g~~VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~-~ev~~~R~ 513 (573)
T 1m8p_A 447 TREDRHTNIQRIAFVATELTR--------AGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATP-LEHCEQSD 513 (573)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH--------TTCEEEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCC-HHHHHHHC
T ss_pred ChhHHHHHHHHHHHHHHHHHh--------CCCEEEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCC-HHHHHHHh
Confidence 554455555555555555433 79999999999999999999988 4323 3334444444 67777663
No 49
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.14 E-value=3e-10 Score=111.70 Aligned_cols=117 Identities=20% Similarity=0.205 Sum_probs=79.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
++.+|+++|+|||||||+++.|++.|...|.-+..++.+++++. ......|..+.....+.....++..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------- 92 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHG---LNRDLSFKAEDRAENIRRVGEVAKL-------- 92 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTT---TTTTCCSSHHHHHHHHHHHHHHHHH--------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhH---hhcccCcChHHHHHHHHHHHHHHHH--------
Confidence 57899999999999999999999999865655557888777652 2223344333333333333344433
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHH
Q 005388 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNI 479 (699)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI 479 (699)
+...|..+|+++.+..++.|+.++++.. +..++.|.+.|+ .+++.+|+
T Consensus 93 ~~~~~~~vi~~~~~~~~~~r~~~~~~~~-~~~~~~v~L~a~-~e~~~~R~ 140 (200)
T 3uie_A 93 FADAGIICIASLISPYRTDRDACRSLLP-EGDFVEVFMDVP-LSVCEARD 140 (200)
T ss_dssp HHHTTCEEEEECCCCCHHHHHHHHHTSC-TTSEEEEEECCC-HHHHHHHC
T ss_pred HHhCCceEEEecCCchHHHHHHHHHhcC-CCCEEEEEEeCC-HHHHHHhc
Confidence 3347899999999999999999988733 233433444444 77777775
No 50
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.11 E-value=2.1e-10 Score=130.66 Aligned_cols=144 Identities=20% Similarity=0.241 Sum_probs=100.3
Q ss_pred cCCCCCCccchhhHHHHHhhhcCCCCCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCC
Q 005388 323 TKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSAD 402 (699)
Q Consensus 323 ~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~ 402 (699)
.....|++......+........++++.+.+|+++|+|||||||+|+.|+++|+..|.++.+++.|.+|+... ....
T Consensus 344 ~g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~---~~~~ 420 (546)
T 2gks_A 344 QGRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLS---RGLG 420 (546)
T ss_dssp TTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTC---TTCC
T ss_pred CCCCCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhc---cccc
Confidence 3456667666556667777777666677899999999999999999999999999898888999888877542 2334
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHH
Q 005388 403 FFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIR 480 (699)
Q Consensus 403 f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~ 480 (699)
|...++...++.+.+++.. +.+.|..||+|++++.+..|+.++++ .+.++.++||. | +.+++.+|+.
T Consensus 421 f~~~er~~~l~~i~~~~~~--------~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~--~-~~e~~~~Rl~ 488 (546)
T 2gks_A 421 FSKEDRITNILRVGFVASE--------IVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVD--A-PVEVCEERDV 488 (546)
T ss_dssp SSHHHHHHHHHHHHHHHHH--------HHHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEE--C-CGGGHHHHCC
T ss_pred ccHHHHHHHHHHHHHHHHH--------HHhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEe--C-CHHHHHHHhh
Confidence 4332222222333333333 23378999999999999888888877 33343455555 4 4677777764
No 51
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.11 E-value=4.3e-10 Score=107.58 Aligned_cols=124 Identities=15% Similarity=0.077 Sum_probs=72.3
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCC----CCCCcC---CCCHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQ----SADFFR---ADNPEGMEARNEVAALAM 423 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~----~~~f~~---~~~~~~~~~~~~vA~~~l 423 (699)
+.+|+++|+|||||||+|+.|++.|+. ....++.|++++.+.+... ...|.+ ......++.........+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPE---PWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGV 79 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS---CEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC---CeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHH
Confidence 468999999999999999999999753 2334567777764433110 011111 111222332222111111
Q ss_pred HHHHHHHhcCCeEEEEeCCCC-CHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 424 EDMISWMHEGGQVGIFDATNS-SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 424 ~dl~~~L~~~G~vVIlDAtn~-~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
.-+.+.|..||+|+++. ....|+.+++... +..+++|.+.|+ .+++.+|++.|.
T Consensus 80 ----~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~~~-~e~l~~R~~~r~ 134 (178)
T 1qhx_A 80 ----VAMARAGARIIIDDVFLGGAAAQERWRSFVG-DLDVLWVGVRCD-GAVAEGRETARG 134 (178)
T ss_dssp ----HHHHHTTCEEEEEECCTTTHHHHHHHHHHHT-TCCEEEEEEECC-HHHHHHHHHHTS
T ss_pred ----HHHHhcCCeEEEEeccccChHHHHHHHHHhc-CCcEEEEEEECC-HHHHHHHHHhhC
Confidence 11233688999999886 4455666666632 233445555565 888899997764
No 52
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.10 E-value=1.7e-09 Score=113.25 Aligned_cols=153 Identities=11% Similarity=0.079 Sum_probs=89.8
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCC-CCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQ-SADFFRADNPEGMEARNEVAALAMEDM 426 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~-~~~f~~~~~~~~~~~~~~vA~~~l~dl 426 (699)
...|.+|+|+|+|||||||+|+.|++.+. .....++.|.+|....+... ...| ........ ..........+
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R~~~~~~~~~~~~~-~~~a~~~~---~~~~~~~~~~~ 102 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQQHPNFDELVKLY-EKDVVKHV---TPYSNRMTEAI 102 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHTTSTTHHHHHHHH-GGGCHHHH---HHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhHHhchhhHHHHHHc-cchhhhhh---hHHHHHHHHHH
Confidence 34689999999999999999999998863 13345676777753211000 0001 11111111 11111111112
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHH----HHHHHHhhccCCCCCCCCChHHHHHH
Q 005388 427 ISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDII----ERNIRLKIQQSPDYAEEPDFEAGLQD 501 (699)
Q Consensus 427 ~~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i----~rrI~~r~~~spD~s~~~d~e~al~d 501 (699)
+..+.+.|..||+|+++.....+..+++. .+.++.+.++.+.|+ +++. .+|+..|.......... .+++..+.
T Consensus 103 v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p-~~~~~l~~~~Rl~~R~~~g~l~~R~-~~~e~~~~ 180 (287)
T 1gvn_B 103 ISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVP-KINSYLGTIERYETMYADDPMTARA-TPKQAHDI 180 (287)
T ss_dssp HHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCC-HHHHHHHHHHHHHHHHHHCTTTCCC-CCHHHHHH
T ss_pred HHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECC-HHHHHHHHHHHHHHHHHhCCCCCCC-CCHHHHHH
Confidence 22223358899999999998877777776 667887766666666 6666 77877665433323334 44455556
Q ss_pred HHHHHHhh
Q 005388 502 FKNRLANY 509 (699)
Q Consensus 502 ~~~Ri~~y 509 (699)
..+|+..-
T Consensus 181 i~~rl~~a 188 (287)
T 1gvn_B 181 VVKNLPTN 188 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66676544
No 53
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.07 E-value=3.4e-10 Score=111.15 Aligned_cols=116 Identities=13% Similarity=0.185 Sum_probs=71.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH-HhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR-LKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr-~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
.+.+|+|+|.|||||||+|+.|++.+++..++.|.+.....+. ...+ ..|..... ...+ ..+..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g----~~~~~~~~---~~~~--------~~l~~ 81 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEG----IPLTDDDR---WPWL--------AAIGE 81 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHT----CCCCHHHH---HHHH--------HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcC----CCCCchhh---HHHH--------HHHHH
Confidence 3568999999999999999999999875544443332111011 1111 11211101 1111 11112
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
.+ ..|..+|+|+++.....|+.+..+....+.++++.+ +.+++.+|+..|..
T Consensus 82 ~~-~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~---~~e~~~~Rl~~R~~ 133 (202)
T 3t61_A 82 RL-ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHG---SESVLAERMHHRTG 133 (202)
T ss_dssp HH-TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEEC---CHHHHHHHHHHHHS
T ss_pred HH-hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeC---CHHHHHHHHHHhhc
Confidence 22 358889999999999888888776433345566655 58899999988754
No 54
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.05 E-value=1.1e-09 Score=126.05 Aligned_cols=120 Identities=23% Similarity=0.246 Sum_probs=87.5
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
.++.+|+|+|+|||||||+|+.|+++|...+..+..++.+.+|. +......|...++++.++.+.++++.+++
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~---~L~~~~~fs~~dree~~r~i~eva~~~l~---- 122 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ---GLNKNLGFSPEDREENVRRIAEVAKLFAD---- 122 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT---TTTTTCCSSHHHHHHHHHHHHHHHHHHHH----
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh---ccCccccCChhhhHHHHHHHHHHHHHHHh----
Confidence 47889999999999999999999999977777777777666654 33334445445566666665555554433
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHH
Q 005388 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIR 480 (699)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~ 480 (699)
.|.+||.|.++..+..|+.++++ .+.+.+++.|.+.|+ .+++.+|+.
T Consensus 123 ----~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap-~Evl~~Rl~ 170 (630)
T 1x6v_B 123 ----AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAP-LHVCEQRDV 170 (630)
T ss_dssp ----TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECC-HHHHHHHCT
T ss_pred ----CCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECC-HHHHHHHhc
Confidence 79999999888887888999888 555555555555555 778888764
No 55
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.04 E-value=1.6e-09 Score=107.37 Aligned_cols=118 Identities=24% Similarity=0.222 Sum_probs=79.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh-hcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~-~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
.+.+|+++|+|||||||+++.|+++|. ..|++...++.+.+|... .....|+..++...++.+..++..+++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l---~~~~~~~~~~r~~~~~~~~~~~~~~l~---- 96 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGL---NKDLGFSEADRNENIRRIAEVAKLFAD---- 96 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTT---TTTCCSSHHHHHHHHHHHHHHHHHHHH----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhh---ccccCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 568999999999999999999999998 677778888877776432 222344433344444433333333333
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHc-------CCceEEEEEEEeCCHHHHHHHH
Q 005388 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAE-------GNCKIIFLETICNDRDIIERNI 479 (699)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~el~~-------~~~~vifIE~~c~d~e~i~rrI 479 (699)
.|.+||+|..+.....|+.+.++.. .+.+.++|.+.|+ ++++.+|+
T Consensus 97 ----~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~-~e~~~~R~ 149 (211)
T 1m7g_A 97 ----SNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVP-VEVAEQRD 149 (211)
T ss_dssp ----TTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECC-HHHHHTSC
T ss_pred ----CCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCC-HHHHHHhh
Confidence 6899999977666677888888732 2334445555555 67766664
No 56
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.00 E-value=1.2e-09 Score=111.84 Aligned_cols=125 Identities=11% Similarity=0.118 Sum_probs=77.9
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhC---CCCCCCCcCCCCHHHHHH-HHHHHHHHH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG---VNQSADFFRADNPEGMEA-RNEVAALAM 423 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g---~~~~~~f~~~~~~~~~~~-~~~vA~~~l 423 (699)
...|.+|+|+|+|||||||+|+.|++.++ ....+++.|.+|+.... .....+. ........ ..+++
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r~~~~~~~~i~~~~g~---~~~~~~~~~~~~~~---- 98 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFRSQHPHYLELQQEYGK---DSVEYTKDFAGKMV---- 98 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGGTTSTTHHHHHTTCSS---TTHHHHHHHHHHHH----
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHHHhchhHHHHHHHcCc---hHHHHhhHHHHHHH----
Confidence 45688999999999999999999999865 23456777777663211 0011111 11111110 11111
Q ss_pred HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 424 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 424 ~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
..+...+.+.|..+|+|+++.....+..+..+ .+.++.+.++.+.| +.+++.+|+..|.
T Consensus 99 ~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~-~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 99 ESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIAT-KPELSYLSTLIRY 158 (253)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHHHHHH
Confidence 22222233467789999999887777777666 66777766655545 5788888887664
No 57
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.99 E-value=6.5e-09 Score=100.75 Aligned_cols=146 Identities=14% Similarity=0.188 Sum_probs=84.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhh-CCCCC---CCCcC---CCCHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKH-GVNQS---ADFFR---ADNPEGMEARNEVAAL 421 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~-g~~~~---~~f~~---~~~~~~~~~~~~vA~~ 421 (699)
.+.+|+++|.|||||||+|+.|+++|++. +++.|++ |+... +.... ..++. ..... ....
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~ 78 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFT-----HLSTGELLREELASESERSKLIRDIMERGDLVPSG-------IVLE 78 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHH-------HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCe-----EEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHH-------HHHH
Confidence 35789999999999999999999998744 4555554 32211 00000 00000 00111 1111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHH
Q 005388 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 501 (699)
Q Consensus 422 ~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d 501 (699)
.+.+.+......|..+|+|+.....+.+..+.......-.++||++ +++++.+|+..|... . . ..+...+.
T Consensus 79 ~~~~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~---~~~~~~~R~~~R~~~----~-~-~~~~~~~~ 149 (199)
T 2bwj_A 79 LLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDC---SADTMTNRLLQMSRS----S-L-PVDDTTKT 149 (199)
T ss_dssp HHHHHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEEC---CHHHHHHHHHHTCCC----C-S-CHHHHHHH
T ss_pred HHHHHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEEC---CHHHHHHHHHcCCCC----C-C-CCCCCHHH
Confidence 1111111122357889999998888777766543211224666665 688899999876431 1 1 34555677
Q ss_pred HHHHHHhhhhhccCC
Q 005388 502 FKNRLANYEKVYEPV 516 (699)
Q Consensus 502 ~~~Ri~~y~~~yEpl 516 (699)
+.+|+..|....+|+
T Consensus 150 ~~~r~~~~~~~~~~~ 164 (199)
T 2bwj_A 150 IAKRLEAYYRASIPV 164 (199)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888776666553
No 58
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.96 E-value=1.4e-08 Score=97.67 Aligned_cols=150 Identities=15% Similarity=0.221 Sum_probs=78.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCC-C-----CCcC---CCCHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-A-----DFFR---ADNPEGMEARNEVAA 420 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~-~-----~f~~---~~~~~~~~~~~~vA~ 420 (699)
+|++|+++|.|||||||+|+.|++++++. +++.|++-+........ . .+.. ..... ....+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~l~ 73 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYT-----HLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVE---ITISLLK 73 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHH---HHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCe-----EEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHH---HHHHHHH
Confidence 36899999999999999999999987653 46666553322111100 0 0000 00111 1111111
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCc-eEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHH
Q 005388 421 LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNC-KIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGL 499 (699)
Q Consensus 421 ~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~-~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al 499 (699)
..+......+ ..|..+|+|+.....+.++.+........ .-+.|.+.| +++++.+|+..|.... +..+. . .
T Consensus 74 ~~~~~~~~~~-~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~~~~-~r~~~-~----~ 145 (196)
T 1tev_A 74 REMDQTMAAN-AQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC-NNEICIERCLERGKSS-GRSDD-N----R 145 (196)
T ss_dssp HHHHHHHHHC-TTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEEC-CHHHHHHHHHHHHHTS-SCCSC-C----H
T ss_pred HHHHhhhccc-cCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEEC-CHHHHHHHHHcccccC-CCCCC-C----H
Confidence 1122211112 24778999999999887776665522211 112333444 5788888887664311 11111 2 2
Q ss_pred HHHHHHHHhhhhhccC
Q 005388 500 QDFKNRLANYEKVYEP 515 (699)
Q Consensus 500 ~d~~~Ri~~y~~~yEp 515 (699)
+.+.+|+..|.+..+|
T Consensus 146 ~~~~~~~~~~~~~~~~ 161 (196)
T 1tev_A 146 ESLEKRIQTYLQSTKP 161 (196)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHH
Confidence 3345566666555444
No 59
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.95 E-value=1.9e-09 Score=104.31 Aligned_cols=145 Identities=14% Similarity=0.216 Sum_probs=80.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCC-----CCcC---CCCHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-----DFFR---ADNPEGMEARNEVAAL 421 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~-----~f~~---~~~~~~~~~~~~vA~~ 421 (699)
++.+|+++|.|||||||+|+.|++++++. +++.|++-+......... .++. ..... ....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~ 75 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYT-----HLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLE-------TVLD 75 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHH-------HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCe-----EEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHH-------HHHH
Confidence 46789999999999999999999998754 355554322211000000 0000 00010 1111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHH
Q 005388 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 501 (699)
Q Consensus 422 ~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d 501 (699)
.+.+.+.-....|..+|+|+.....+.++.+.........++||.+ +++++.+|+..|....+. .+...+.
T Consensus 76 ~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~---~~e~~~~R~~~R~~~~~~------~~~~~~~ 146 (196)
T 2c95_A 76 MLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDA---GPETMTQRLLKRGETSGR------VDDNEET 146 (196)
T ss_dssp HHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEEC---CHHHHHHHHHHHHTSSSC------GGGSHHH
T ss_pred HHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEEC---CHHHHHHHHHccCCcCCC------CCCCHHH
Confidence 1122222222357889999977777666666554322335666665 688889999877532221 2223345
Q ss_pred HHHHHHhhhhhccC
Q 005388 502 FKNRLANYEKVYEP 515 (699)
Q Consensus 502 ~~~Ri~~y~~~yEp 515 (699)
+.+|+..|....+|
T Consensus 147 ~~~r~~~~~~~~~~ 160 (196)
T 2c95_A 147 IKKRLETYYKATEP 160 (196)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66777776655544
No 60
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.92 E-value=8e-09 Score=96.98 Aligned_cols=120 Identities=12% Similarity=0.099 Sum_probs=68.5
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHH-HHHHHHHHH-HHHHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEA-RNEVAALAM-EDMISW 429 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~-~~~vA~~~l-~dl~~~ 429 (699)
++|+++|.|||||||+|+.| +.+++. +++.|++-+....... ............ ....-...+ +-+...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~-----~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAK-----VIVMSDVVRKRYSIEA---KPGERLMDFAKRLREIYGDGVVARLCVEE 72 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCE-----EEEHHHHHHHHHHHHC------CCHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCc-----EEEHhHHHHHHHHhcC---CChhHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 58999999999999999999 665543 4555554332211110 000111111111 110000011 111223
Q ss_pred H-hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 430 M-HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 430 L-~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
+ ...+..+|+|+. .....++.+.+.......++||.+ +++++.+|+..|.+
T Consensus 73 l~~~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~---~~~~~~~R~~~R~~ 124 (179)
T 3lw7_A 73 LGTSNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHS---PPKIRYKRMIERLR 124 (179)
T ss_dssp HCSCCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEEC---CHHHHHHHHHTCC-
T ss_pred HHhcCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEEC---CHHHHHHHHHhccC
Confidence 3 145888999998 888888888877544555666665 68999999987743
No 61
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.92 E-value=3.7e-09 Score=101.27 Aligned_cols=121 Identities=19% Similarity=0.097 Sum_probs=65.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCC-CceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGH-DTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi-~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
++++|+|+|+|||||||+|+.|+++|++..+ +.+.+ .+.+++.. . .....|... +...+...+++. .
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~-g~~i~~~~-~-~g~~~~~~~--~~~~~~~~~~i~-------~ 71 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEM-GQALRKLT-P-GFSGDPQEH--PMWIPLMLDALQ-------Y 71 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHH-HHHHHHTS-T-TCCSCGGGS--TTHHHHHHHHHH-------H
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhh-HHHHHHhC-c-cccchhhhh--HHHHHHHHHHHH-------H
Confidence 4678999999999999999999999775332 11000 22233322 1 111222111 111111112222 2
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
.+...|.+||+|+++.....+..+.+. .+.++.+.+|.+.|+ ++++.+|+..|.
T Consensus 72 ~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~-~e~~~~R~~~R~ 126 (183)
T 2vli_A 72 ASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAP-LNVVLERLRRDG 126 (183)
T ss_dssp HHHHCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECC-HHHHHHHHHTC-
T ss_pred HHHhCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCC-HHHHHHHHHhcc
Confidence 233358889999999988777776665 445544444445454 888899987664
No 62
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.92 E-value=1.7e-09 Score=104.12 Aligned_cols=139 Identities=17% Similarity=0.236 Sum_probs=76.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L 430 (699)
+.+|+|+|+|||||||+|+.|+++|++. +++.|++++...|.... .++....+..++... ..++ ..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~-----~i~~d~~~~~~~g~~~~-~~~~~~g~~~~~~~~---~~~~----~~~ 71 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRI-----LYDSDKEIEKRTGADIA-WIFEMEGEAGFRRRE---REMI----EAL 71 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHTSCHH-HHHHHHHHHHHHHHH---HHHH----HHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHcCCChh-hHHHHhCHHHHHHHH---HHHH----HHH
Confidence 4579999999999999999999998754 46667767765543221 222222222233221 1222 223
Q ss_pred hcCCeEEEEeC--CCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHH--HHhhccCCCCCCCCCh-HHHHHHHHHH
Q 005388 431 HEGGQVGIFDA--TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNI--RLKIQQSPDYAEEPDF-EAGLQDFKNR 505 (699)
Q Consensus 431 ~~~G~vVIlDA--tn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI--~~r~~~spD~s~~~d~-e~al~d~~~R 505 (699)
......+|..+ +......|+.+... ..++|+.+ +.+++.+|+ +.+. .+|...+. +. +...+.+.+|
T Consensus 72 ~~~~~~vi~~gg~~~~~~~~~~~l~~~----~~vi~L~~---~~e~l~~Rl~~~~~~-~rp~~~~~-~~~~~l~~~~~~r 142 (185)
T 3trf_A 72 CKLDNIILATGGGVVLDEKNRQQISET----GVVIYLTA---SIDTQLKRIGQKGEM-RRPLFIKN-NSKEKLQQLNEIR 142 (185)
T ss_dssp HHSSSCEEECCTTGGGSHHHHHHHHHH----EEEEEEEC---CHHHHHHHHHCCTTC-SSCCCCCH-HHHHHHHHHHHHH
T ss_pred HhcCCcEEecCCceecCHHHHHHHHhC----CcEEEEEC---CHHHHHHHHhhcCCC-CCCCCCCC-CHHHHHHHHHHHH
Confidence 22333444322 23344555544432 24566665 589999999 4432 35666543 32 3333335566
Q ss_pred HHhhhh
Q 005388 506 LANYEK 511 (699)
Q Consensus 506 i~~y~~ 511 (699)
.+.|+.
T Consensus 143 ~~~y~~ 148 (185)
T 3trf_A 143 KPLYQA 148 (185)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 666654
No 63
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.91 E-value=1.6e-09 Score=106.51 Aligned_cols=113 Identities=14% Similarity=0.213 Sum_probs=69.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHH------HHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR------RLKHGVNQSADFFRADNPEGMEARNEVAALAM 423 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyR------r~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l 423 (699)
.+.+|+++|.|||||||+++.|+..+++. .++.++++ +...+. .|........+..+..++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~-----~i~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~- 97 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLE-----FAEADAFHSPENIATMQRGI----PLTDEDRWPWLRSLAEWMDAR- 97 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCE-----EEEGGGGSCHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCe-----EEcccccccHHHHHHHhcCC----CCCCcccccHHHHHHHHHHHH-
Confidence 46789999999999999999999988543 45555442 212221 111111111223333333222
Q ss_pred HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 424 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 424 ~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
...|..+|+|++...+..|+.+.++.. .+.++||. | +.+++.+|+..|.
T Consensus 98 -------~~~g~~viid~~~~~~~~~~~l~~~~~-~~~vv~l~--~-~~e~l~~Rl~~R~ 146 (200)
T 4eun_A 98 -------ADAGVSTIITCSALKRTYRDVLREGPP-SVDFLHLD--G-PAEVIKGRMSKRE 146 (200)
T ss_dssp -------HHTTCCEEEEECCCCHHHHHHHTTSSS-CCEEEEEE--C-CHHHHHHHHTTCS
T ss_pred -------HhcCCCEEEEchhhhHHHHHHHHHhCC-ceEEEEEe--C-CHHHHHHHHHhcc
Confidence 225788899999998888877765522 34555555 4 4889999997664
No 64
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.90 E-value=1.2e-08 Score=98.00 Aligned_cols=119 Identities=21% Similarity=0.204 Sum_probs=74.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
++.+|+++|.|||||||+++.|++.|...|+....++.+.+|+.. .....|...+++..++.....+. .
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--------~ 72 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGL---NKNLGFSPEDREENVRRIAEVAK--------L 72 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT---TTTCCSSHHHHHHHHHHHHHHHH--------H
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHH---hhccccccccHHHHHHHHHHHHH--------H
Confidence 467899999999999999999999986666666666766665422 22222322223333333332221 1
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHH
Q 005388 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIR 480 (699)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~ 480 (699)
+.+.|.+++.+...+....|..+..+ ...++..+.|.+.|+ ++++.+|+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~R~~ 123 (179)
T 2pez_A 73 FADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAP-LHVCEQRDV 123 (179)
T ss_dssp HHHTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHCT
T ss_pred HHHCCCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCC-HHHHHHHHh
Confidence 33367788888777766666766666 444554444555555 777777763
No 65
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=3.9e-09 Score=103.70 Aligned_cols=129 Identities=18% Similarity=0.228 Sum_probs=72.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L 430 (699)
+.+|+++|.|||||||+|+.|++.|++. .++.|++.....+.... .++....+..++.... .++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~-----~i~~d~~~~~~~g~~i~-~~~~~~~~~~~~~~e~-------~~l~~l 91 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVP-----FIDLDWYIEERFHKTVG-ELFTERGEAGFRELER-------NMLHEV 91 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSCHH-HHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcchHHHHHHhCCcHH-HHHHhcChHHHHHHHH-------HHHHHH
Confidence 4589999999999999999999998654 46666665544432211 1222222222222221 222223
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHH
Q 005388 431 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAG 498 (699)
Q Consensus 431 ~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~a 498 (699)
.. +..+|++........++.+..+.+ ...++|+.+ +.+++.+|+..+...+|...+. +.+++
T Consensus 92 ~~-~~~~vi~~ggg~~~~~~~~~~l~~-~~~vi~L~~---~~e~l~~Rl~~~~~~Rp~~~~~-~~~~~ 153 (199)
T 3vaa_A 92 AE-FENVVISTGGGAPCFYDNMEFMNR-TGKTVFLNV---HPDVLFRRLRIAKQQRPILQGK-EDDEL 153 (199)
T ss_dssp TT-CSSEEEECCTTGGGSTTHHHHHHH-HSEEEEEEC---CHHHHHHHHHHTGGGCGGGTTC-CHHHH
T ss_pred hh-cCCcEEECCCcEEccHHHHHHHHc-CCEEEEEEC---CHHHHHHHHhcCCCCCCCcCCC-ChhhH
Confidence 33 344556655544433333333322 345677776 6899999998333346766665 55443
No 66
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.86 E-value=7.4e-09 Score=98.92 Aligned_cols=113 Identities=20% Similarity=0.290 Sum_probs=66.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH------HhhCCCCCCCCcCCCCHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR------LKHGVNQSADFFRADNPEGMEARNEVAALAM 423 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr------~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l 423 (699)
.+.+|+++|.|||||||+++.|++.+++. +++.|++++ ...|. .+.+......+..+..++..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~-----~i~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~- 76 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAA-----FLDGDFLHPRRNIEKMASGE----PLNDDDRKPWLQALNDAAFAM- 76 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCE-----EEEGGGGCCHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHH-
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcE-----EEeCccccchHHHHHhhcCc----CCCccccccHHHHHHHHHHHH-
Confidence 45789999999999999999999987644 455554431 12221 111111111222222222222
Q ss_pred HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 424 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 424 ~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
+ ..|..+|+|+++..+..|+.+.+.. ..+.++||. | +++++.+|+..|.
T Consensus 77 ------~-~~~~~~vi~~~~~~~~~~~~l~~~~-~~~~vv~l~--~-~~e~~~~R~~~R~ 125 (175)
T 1knq_A 77 ------Q-RTNKVSLIVCSALKKHYRDLLREGN-PNLSFIYLK--G-DFDVIESRLKARK 125 (175)
T ss_dssp ------H-HHCSEEEEECCCCSHHHHHHHHTTC-TTEEEEEEE--C-CHHHHHHHHHTST
T ss_pred ------H-hcCCcEEEEeCchHHHHHHHHHhcC-CCEEEEEEE--C-CHHHHHHHHHhcc
Confidence 2 2477899999988877766654321 122455555 4 5888999998764
No 67
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.84 E-value=6.7e-08 Score=92.70 Aligned_cols=146 Identities=14% Similarity=0.327 Sum_probs=77.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhh-CCCCCC---CCcCCCCHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKH-GVNQSA---DFFRADNPEGMEARNEVAALAME 424 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~-g~~~~~---~f~~~~~~~~~~~~~~vA~~~l~ 424 (699)
.+.+|+++|.|||||||+|+.|++++++. +++.|++ |+... +..... .++..... .. ..+....+.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~-~~---~~~~~~~l~ 75 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWV-----HLSAGDLLRQEQQSGSKDGEMIATMIKNGEI-VP---SIVTVKLLK 75 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCTTHHHHHHHHHTTCC-CC---HHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCe-----EeeHHHHHHHHHhcCCHHHHHHHHHHHCCCC-CC---HHHHHHHHH
Confidence 46789999999999999999999998754 4555554 33221 100000 00000000 00 011111111
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcC--Cc-eEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHH
Q 005388 425 DMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEG--NC-KIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 501 (699)
Q Consensus 425 dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~--~~-~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d 501 (699)
+.. ....|..+|+|+.....+.+..+....+. .. .++||. | +++++.+|+..|..... -.+ ...+.
T Consensus 76 ~~i--~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~--~-~~e~~~~R~~~R~~~~~-r~~-----~~~~~ 144 (194)
T 1qf9_A 76 NAI--DANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFD--C-PEEVMTQRLLKRGESSG-RSD-----DNIES 144 (194)
T ss_dssp HHH--HTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEE--C-CHHHHHHHHHHHHTTSC-CTT-----CSHHH
T ss_pred HHH--HhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEE--C-CHHHHHHHHHhccccCC-CCC-----CCHHH
Confidence 111 11257889999988888777777665332 11 234444 4 58888999977753111 111 12345
Q ss_pred HHHHHHhhhhhccC
Q 005388 502 FKNRLANYEKVYEP 515 (699)
Q Consensus 502 ~~~Ri~~y~~~yEp 515 (699)
+.+|+..|.+..+|
T Consensus 145 ~~~ri~~~~~~~~~ 158 (194)
T 1qf9_A 145 IKKRFNTFNVQTKL 158 (194)
T ss_dssp HHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhHHH
Confidence 66677766544433
No 68
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.84 E-value=5.5e-09 Score=100.63 Aligned_cols=136 Identities=21% Similarity=0.219 Sum_probs=75.0
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 431 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~ 431 (699)
.+|+|+|+|||||||+|+.|+++|++. +++.|++++...|... ..++...++..++.... .++..+ +.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~D~~~~~~~g~~~-~~~~~~~g~~~~~~~~~---~~~~~~---~~ 70 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVG-----LLDTDVAIEQRTGRSI-ADIFATDGEQEFRRIEE---DVVRAA---LA 70 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHSSCH-HHHHHHHCHHHHHHHHH---HHHHHH---HH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCC-----EEeCchHHHHHcCCCH-HHHHHHhChHHHHHHHH---HHHHHH---Hh
Confidence 359999999999999999999998754 5777777775554321 11222223333332211 122211 12
Q ss_pred cCCeEEEEeCCC--CCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHH-HHHHh
Q 005388 432 EGGQVGIFDATN--SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK-NRLAN 508 (699)
Q Consensus 432 ~~G~vVIlDAtn--~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~-~Ri~~ 508 (699)
....||.++.. .....|+.+. .+ .++||.+ +.+++.+|+..|. .++.+... +.+..++.++ +|.+.
T Consensus 71 -~~~~vi~~g~~~v~~~~~~~~l~----~~-~vV~L~~---~~e~~~~Rl~~r~-~r~~~~~~-~~~~~i~~~~~~r~~~ 139 (184)
T 2iyv_A 71 -DHDGVLSLGGGAVTSPGVRAALA----GH-TVVYLEI---SAAEGVRRTGGNT-VRPLLAGP-DRAEKYRALMAKRAPL 139 (184)
T ss_dssp -HCCSEEECCTTGGGSHHHHHHHT----TS-CEEEEEC---CHHHHHHHTTCCC-CCSSTTSC-CHHHHHHHHHHHHHHH
T ss_pred -cCCeEEecCCcEEcCHHHHHHHc----CC-eEEEEeC---CHHHHHHHHhCCC-CCCCccCC-CHHHHHHHHHHHHHHH
Confidence 23334433321 2333444332 23 4666665 6889999987653 24555554 5555555554 45555
Q ss_pred hh
Q 005388 509 YE 510 (699)
Q Consensus 509 y~ 510 (699)
|.
T Consensus 140 ~~ 141 (184)
T 2iyv_A 140 YR 141 (184)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 69
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.83 E-value=2.1e-08 Score=98.16 Aligned_cols=144 Identities=18% Similarity=0.238 Sum_probs=79.5
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCCC----CCCcC---CCCHHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFR---ADNPEGMEARNEVAA 420 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~~----~~f~~---~~~~~~~~~~~~vA~ 420 (699)
..|++|+|+|.|||||||+|+.|++++++. +++.|++ |+...+.... ..++. .... ....
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~-----~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~-------~~~~ 85 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIP-----QISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS-------DLTN 85 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCH-------HHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCc-----EEehhHHHHHHHHcCChHHHHHHHHHHcCCcccH-------HHHH
Confidence 467899999999999999999999998653 4665555 3211110000 00000 0000 0111
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCce-EEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHH
Q 005388 421 LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAG 498 (699)
Q Consensus 421 ~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~-vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~a 498 (699)
..+.+...... .|..+|+|+.......++.+..+ .+.+.. .++|.+.| +++++.+|+..|. +++ . +.
T Consensus 86 ~~~~~~~~~~~-~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~-~~e~~~~Rl~~R~--r~~---~-~~--- 154 (201)
T 2cdn_A 86 ELVDDRLNNPD-AANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRV-SEEVLLERLKGRG--RAD---D-TD--- 154 (201)
T ss_dssp HHHHHHTTSGG-GTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC-CHHHHHHHHHHHC--CTT---C-SH---
T ss_pred HHHHHHHhccc-CCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHHcCC--CCC---C-CH---
Confidence 11111111111 35568999988888777777765 333321 13344444 4788899998773 232 1 22
Q ss_pred HHHHHHHHHhhhhhccCC
Q 005388 499 LQDFKNRLANYEKVYEPV 516 (699)
Q Consensus 499 l~d~~~Ri~~y~~~yEpl 516 (699)
+.+.+|+..|....+|+
T Consensus 155 -e~~~~r~~~~~~~~~~~ 171 (201)
T 2cdn_A 155 -DVILNRMKVYRDETAPL 171 (201)
T ss_dssp -HHHHHHHHHHHHHTTTH
T ss_pred -HHHHHHHHHHHHhhHHH
Confidence 34667787777655543
No 70
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.76 E-value=8e-08 Score=96.98 Aligned_cols=146 Identities=14% Similarity=0.246 Sum_probs=83.9
Q ss_pred CCCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCCCCCCcCCCCHHHHHHHH---------
Q 005388 347 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN--------- 416 (699)
Q Consensus 347 ~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~~~~~~~~~--------- 416 (699)
.-.++.+|++.|.|||||+|.|+.|+++++... ++.||. |..... .++.+.....
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h-----IstGdllR~~i~~----------~t~lg~~~~~~~~~G~lVp 89 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH-----LSSGDLLRAEVQS----------GSPKGKELKAMMERGELVP 89 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE-----ECHHHHHHHHHTT----------CCHHHHHHHHHHHHTCCCC
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCce-----EcHHHHHHHHHHc----------CCchHHHHHHHHhcCCCCC
Confidence 445778999999999999999999999977654 444554 332211 1111111111
Q ss_pred -HHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCCh
Q 005388 417 -EVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF 495 (699)
Q Consensus 417 -~vA~~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~ 495 (699)
++...++.+-+.-.......+|+|+---+..+-+.+.+....-..+++++| +.+++.+|+..|... .+ ..
T Consensus 90 de~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v---~~e~~~~Rl~~R~~~----~~--R~ 160 (217)
T 3umf_A 90 LEVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDV---SEEVMRKRLLKRAET----SN--RV 160 (217)
T ss_dssp HHHHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEEC---CHHHHHHHHSCC------------C
T ss_pred HHHHHHHHHHHHhhccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccC---CHHHHHHHHhccccc----CC--CC
Confidence 112222221111122345678999977676666665554222234555655 578888888666321 11 22
Q ss_pred HHHHHHHHHHHHhhhhhccCC
Q 005388 496 EAGLQDFKNRLANYEKVYEPV 516 (699)
Q Consensus 496 e~al~d~~~Ri~~y~~~yEpl 516 (699)
++..+-+.+|++.|.+.-+|+
T Consensus 161 DD~~e~i~~Rl~~Y~~~t~pl 181 (217)
T 3umf_A 161 DDNEETIVKRFRTFNELTKPV 181 (217)
T ss_dssp HHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 344456788999998877776
No 71
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.75 E-value=2.4e-07 Score=90.43 Aligned_cols=119 Identities=13% Similarity=0.179 Sum_probs=66.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhC-CCCCC-----CCcCC---C-CHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG-VNQSA-----DFFRA---D-NPEGMEARNEVA 419 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g-~~~~~-----~f~~~---~-~~~~~~~~~~vA 419 (699)
++.+|+++|.|||||||+|+.|++++++ .+++.|++-+.... ..... .++.. . .+.....+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~-----~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~--- 85 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSF-----VHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLR--- 85 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSC-----EEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHH---
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc-----eEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHH---
Confidence 5679999999999999999999998654 44555554332211 00000 00000 0 111111111
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 420 ALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 420 ~~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
+.+...+..++..+|+|+.....+....+.......-.++||.+ +++++.+|+..|.
T Consensus 86 ----~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~---~~e~~~~Rl~~R~ 142 (203)
T 1ukz_A 86 ----NAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDC---PEDIMLERLLERG 142 (203)
T ss_dssp ----HHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEEC---CHHHHHHHHHHHH
T ss_pred ----HHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEEC---CHHHHHHHHHhcc
Confidence 11222344433688999987777666655544222224566655 5788888887664
No 72
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.73 E-value=1.8e-08 Score=96.87 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=63.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCC-C---CCCcCC---CCHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQ-S---ADFFRA---DNPEGMEARNEVAAL 421 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~-~---~~f~~~---~~~~~~~~~~~vA~~ 421 (699)
++.+|+++|.|||||||+|+.|++++++.. ++.|++ |+...+... . ..++.. .... ....+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~-----i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~---~~~~~--- 71 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKK-----LSTGDILRDHVARGTPLGERVRPIMERGDLVPDD---LILEL--- 71 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEE-----ECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHH---HHHHH---
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeE-----ecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHH---HHHHH---
Confidence 467899999999999999999999987544 444433 222111000 0 000000 0000 00011
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCce-EEEEEEEeCCHHHHHHHHHHhh
Q 005388 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 422 ~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~-vifIE~~c~d~e~i~rrI~~r~ 483 (699)
+ ...+. .| +|+|+.......+..+..+ .+.+.. -++|.+.|+ ++++.+|+..|.
T Consensus 72 -~---~~~l~-~~--~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~-~e~~~~R~~~R~ 127 (186)
T 3cm0_A 72 -I---REELA-ER--VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVP-EEELVRRILRRA 127 (186)
T ss_dssp -H---HHHCC-SE--EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECC-HHHHHHHHHHHH
T ss_pred -H---HHHhc-CC--EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhcc
Confidence 1 11122 23 8999988887777666655 444432 234444455 788888987764
No 73
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.68 E-value=5.3e-08 Score=91.85 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=58.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~ 432 (699)
+|+++|.|||||||+|+.|++.+++..++.+ .+..... .....+ .. ...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d-----~~~~~~~-----------~~~~~~----~~--------~~~l~- 53 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS-----SFELAKS-----------GNEKLF----EH--------FNKLA- 53 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC-----CHHHHTT-----------CHHHHH----HH--------HHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc-----ccccchh-----------HHHHHH----HH--------HHHHH-
Confidence 7999999999999999999999876544444 3333211 001001 10 11122
Q ss_pred CCeEEEEeC---------------CCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 433 GGQVGIFDA---------------TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 433 ~G~vVIlDA---------------tn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
.|..+|+|- .......+..+.........++|+.+ +++++.+|+..|.
T Consensus 54 ~~~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~---~~e~~~~R~~~r~ 116 (173)
T 3kb2_A 54 DEDNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHA---DPSVIKKRLRVRG 116 (173)
T ss_dssp TCCSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEEC---CHHHHHHHHHHHS
T ss_pred hCCCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeC---CHHHHHHHHHhcC
Confidence 477788882 22334444444443222334666665 6899999998773
No 74
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.66 E-value=7e-08 Score=92.56 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=35.0
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
+++|+++|.|||||||+|+.|+++|+..|++..+++.|++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~ 42 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV 42 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHH
Confidence 4689999999999999999999999977776778887765
No 75
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.66 E-value=1e-07 Score=94.67 Aligned_cols=119 Identities=19% Similarity=0.219 Sum_probs=64.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH-HhhCCCCC----CCCcC---CCCHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR-LKHGVNQS----ADFFR---ADNPEGMEARNEVAAL 421 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr-~~~g~~~~----~~f~~---~~~~~~~~~~~~vA~~ 421 (699)
++++|+|+|.|||||||+|+.|+++|++. +++.|++-+ ...+.... ..++. ..... ....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~-------~~~~ 70 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAA-----HLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDD-------IMVN 70 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHH-------HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCce-----EEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHH-------HHHH
Confidence 46789999999999999999999998753 455555533 21110000 00000 00010 1111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCC--c-eEEEEEEEeCCHHHHHHHHHHhh
Q 005388 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGN--C-KIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 422 ~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~--~-~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
.+.+........|..+|+|+...+...++.+..+ ...+ + .++|+.+ +++++.+|+..|.
T Consensus 71 ~l~~~l~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~---~~e~~~~R~~~r~ 133 (220)
T 1aky_A 71 MIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKV---DDELLVARITGRL 133 (220)
T ss_dssp HHHHHHHHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEEC---CHHHHHHHHHTEE
T ss_pred HHHHHHHhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC---CHHHHHHHHhCCC
Confidence 1111111011235578899865566666666554 3222 2 3556655 5888889997764
No 76
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.65 E-value=1e-08 Score=101.36 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=80.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCCCCCCcCCCCHHHHHHHH-------HHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN-------EVAALAME 424 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~~~~~~~~~-------~vA~~~l~ 424 (699)
.|+++|.|||||||+|+.|++.+++. +++.|++ |+...+. .. . .......+. .+....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~-~~--~----~~~~~~~~~~g~~~~~~~~~~~~- 68 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIP-----HISTGDMFRAAIKNG-TE--L----GLKAKSFMDQGNLVPDEVTIGIV- 68 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHHTT-CH--H----HHHHHHHHHHTCCCCHHHHHHHH-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EeeHHHHHHHHHhcC-CH--H----HHHHHHHHHCCCCCCHHHHHHHH-
Confidence 58899999999999999999987654 3555444 3322211 00 0 000000000 0111111
Q ss_pred HHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCc---eEEEEEEEeCCHHHHHHHHHHhhcc------------C
Q 005388 425 DMISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNC---KIIFLETICNDRDIIERNIRLKIQQ------------S 486 (699)
Q Consensus 425 dl~~~L~--~~G~vVIlDAtn~~~e~R~~l~el-~~~~~---~vifIE~~c~d~e~i~rrI~~r~~~------------s 486 (699)
...+. ..|..+|+|+.......+..+.+. .+.+. .++++. | +++++.+|+..|... .
T Consensus 69 --~~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~--~-~~e~~~~Rl~~R~~~~~~g~~y~~~~~p 143 (216)
T 3fb4_A 69 --HERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIK--V-EQEELMKRLTGRWICKTCGATYHTIFNP 143 (216)
T ss_dssp --HHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEE--C-CHHHHHHHHHSEEEETTTCCEEETTTBC
T ss_pred --HHHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEE--C-CHHHHHHHHHcCCCCCccCCccccccCC
Confidence 11222 237789999987888877777766 43333 344554 4 578889999877210 0
Q ss_pred CCCCC----------CCChHHHHHHHHHHHHhhhhhccCCC
Q 005388 487 PDYAE----------EPDFEAGLQDFKNRLANYEKVYEPVD 517 (699)
Q Consensus 487 pD~s~----------~~d~e~al~d~~~Ri~~y~~~yEpl~ 517 (699)
|...+ . ..++..+.+.+|+..|....+|+.
T Consensus 144 p~~~~~~~~~~~~l~~-r~~d~~e~i~~rl~~~~~~~~~~~ 183 (216)
T 3fb4_A 144 PAVEGICDKDGGELYQ-RIDDKPETVKNRLDVNMKQTQPLL 183 (216)
T ss_dssp CSSTTBCTTTCCBEEC-CGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccccCcccc-CCCCCHHHHHHHHHHHHHhHHHHH
Confidence 00000 0 123344567788888887777654
No 77
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.64 E-value=1.4e-07 Score=93.83 Aligned_cols=118 Identities=15% Similarity=0.164 Sum_probs=64.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHh-hCCCCCC----CCcC---CCCHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK-HGVNQSA----DFFR---ADNPEGMEARNEVAAL 421 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~-~g~~~~~----~f~~---~~~~~~~~~~~~vA~~ 421 (699)
+++.|+++|.|||||||+|+.|+++|++. +++.|++-+.. .+..... .++. ....+ ...++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~---~~~~~i~~ 75 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLA-----HLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDE---IVLGLVKE 75 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHH---HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCce-----EEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHH---HHHHHHHH
Confidence 34689999999999999999999998654 45555543322 1100000 0000 00010 11111111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCc---eEEEEEEEeCCHHHHHHHHHHhh
Q 005388 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNC---KIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 422 ~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~---~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
.+. - ...|..+|+|+...+....+.+.++ ...+. .++|+++ +++++.+|+..|.
T Consensus 76 ~l~----~-~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~---~~e~~~~Rl~~R~ 133 (217)
T 3be4_A 76 KFD----L-GVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEI---DDSEIIERISGRC 133 (217)
T ss_dssp HHH----T-TTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEEC---CHHHHHHHHHTEE
T ss_pred HHh----c-cccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC---CHHHHHHHHHcCC
Confidence 111 0 1236778899876666666655543 22222 4566665 5889999998764
No 78
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.62 E-value=6.2e-08 Score=92.92 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=34.9
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyR 391 (699)
++|+++|.|||||||+|+.|+++|+..++....++.|++-
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 4799999999999999999999999878878888876653
No 79
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.62 E-value=5.8e-08 Score=91.77 Aligned_cols=135 Identities=15% Similarity=0.238 Sum_probs=72.4
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 431 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~ 431 (699)
+.|+++|.|||||||+|+.|+++|++. +++.|++.+...|... ..++....+..++.+. . .++..+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~g~~~-~~~~~~~~~~~~~~~~---~----~~l~~l~ 67 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIP-----FYDVDEEVQKREGLSI-PQIFEKKGEAYFRKLE---F----EVLKDLS 67 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSCH-HHHHHHSCHHHHHHHH---H----HHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC-----EEECcHHHHHHcCCCH-HHHHHHhChHHHHHHH---H----HHHHHHh
Confidence 369999999999999999999998743 4666666654443111 1112222333332211 1 1222344
Q ss_pred cCCeEEEEeC--CCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHhh
Q 005388 432 EGGQVGIFDA--TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 509 (699)
Q Consensus 432 ~~G~vVIlDA--tn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri~~y 509 (699)
..+.+||.|+ .......++.+. +. ..++||.+ +++++.+|+..|. .++.+. . ..+.+.+.|.+|.+.|
T Consensus 68 ~~~~~Vi~~g~~~~~~~~~~~~l~---~~-~~~i~l~~---~~e~~~~R~~~r~-~r~~~~-~-~~~~i~~~~~~~~~~~ 137 (168)
T 2pt5_A 68 EKENVVISTGGGLGANEEALNFMK---SR-GTTVFIDI---PFEVFLERCKDSK-ERPLLK-R-PLDEIKNLFEERRKIY 137 (168)
T ss_dssp TSSSEEEECCHHHHTCHHHHHHHH---TT-SEEEEEEC---CHHHHHHHCBCTT-CCBGGG-S-CGGGTHHHHHHHHHHH
T ss_pred ccCCeEEECCCCEeCCHHHHHHHH---cC-CEEEEEEC---CHHHHHHHHhCCC-CCCCCc-c-hHHHHHHHHHHHHHHH
Confidence 4566777643 223444444332 22 35666665 6888888886553 234332 1 2334444455554443
No 80
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.59 E-value=1.4e-07 Score=94.59 Aligned_cols=115 Identities=14% Similarity=0.151 Sum_probs=64.3
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCC-C---CCCcCC---CCHHHHHHHHHHHHHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQ-S---ADFFRA---DNPEGMEARNEVAALAM 423 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~-~---~~f~~~---~~~~~~~~~~~vA~~~l 423 (699)
++|+++|.|||||||+|+.|++++++ .+++.|++ |+...+... . ..++.. ... +....++...+
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~-----~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~---~~~~~~i~~~l 72 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSL-----AHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD---DITIPMVLETL 72 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC-----EEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCH---HHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC-----eEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcH---HHHHHHHHHHH
Confidence 36999999999999999999999864 44666655 332111000 0 000000 001 11112222222
Q ss_pred HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCc---eEEEEEEEeCCHHHHHHHHHHhh
Q 005388 424 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNC---KIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 424 ~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~---~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
. -. . |..+|+|+.......+..+.++ ...+. .++++.+ +++++.+|+..|.
T Consensus 73 ~----~~-~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~---~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 73 E----SK-G-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILL---PREVAKNRIMGRR 127 (223)
T ss_dssp H----HH-C-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC---CHHHHHHHHHTBC
T ss_pred h----cc-c-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEEC---CHHHHHHHHHccc
Confidence 2 01 1 7789999866666666666554 33332 3555554 5889999998774
No 81
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.58 E-value=1.4e-07 Score=89.34 Aligned_cols=110 Identities=14% Similarity=0.208 Sum_probs=59.9
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 431 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~ 431 (699)
.+|+++|.|||||||+|+.|+++|++. +++.|++.+...|.... .++...++..++. +.. .++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~d~~~~~~~g~~~~-~~~~~~~~~~~~~---~~~----~~~~~l~ 69 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYE-----FVDTDIFMQHTSGMTVA-DVVAAEGWPGFRR---RES----EALQAVA 69 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHHHCSCHH-HHHHHHHHHHHHH---HHH----HHHHHHC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCc-----EEcccHHHHHHhCCCHH-HHHHHcCHHHHHH---HHH----HHHHHhh
Confidence 369999999999999999999998754 46666666544332110 1111111111111 111 1222344
Q ss_pred cCCeEEEEeCC--CCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHH--Hh
Q 005388 432 EGGQVGIFDAT--NSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIR--LK 482 (699)
Q Consensus 432 ~~G~vVIlDAt--n~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~--~r 482 (699)
.+..||.++. ......++.+.. . ..++||.+ +++++.+|+. .|
T Consensus 70 -~~~~vi~~g~~~~~~~~~~~~l~~---~-~~~i~l~~---~~e~~~~R~~~~~r 116 (173)
T 1e6c_A 70 -TPNRVVATGGGMVLLEQNRQFMRA---H-GTVVYLFA---PAEELALRLQASLQ 116 (173)
T ss_dssp -CSSEEEECCTTGGGSHHHHHHHHH---H-SEEEEEEC---CHHHHHHHHHHHHC
T ss_pred -cCCeEEECCCcEEeCHHHHHHHHc---C-CeEEEEEC---CHHHHHHHHhhccC
Confidence 4445554332 124444544432 1 24566655 5888889987 55
No 82
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.57 E-value=1.5e-07 Score=107.12 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=79.9
Q ss_pred CCCCCCccchhhHHHHHhhhcCCCCCccEEEEEEccCCCChhHHHHHHHHHHhhcC-CCceEeehhhHHHHhhCCCCCCC
Q 005388 324 KNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNVGKYRRLKHGVNQSAD 402 (699)
Q Consensus 324 ~~~~p~~~~~~~~~~l~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~g-i~tdv~~~gdyRr~~~g~~~~~~ 402 (699)
....|.+...................++.+|+|+|++|||||||++.|+..|...+ .....++.+++++.. .....
T Consensus 342 G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l---~~~l~ 418 (552)
T 3cr8_A 342 GLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHL---SSELG 418 (552)
T ss_dssp TCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHT---TSSCC
T ss_pred CCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhh---ccccC
Confidence 34444444322333333333322334678999999999999999999999987544 345568887776532 22333
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHH
Q 005388 403 FFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIR 480 (699)
Q Consensus 403 f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~ 480 (699)
|...++...++.+..++.. +...+.++|.....+....|+.++++ .+.+ .+++|.+.|+ .+++.+|++
T Consensus 419 f~~~~r~~~~r~i~~v~q~--------l~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~-~e~~~~R~~ 487 (552)
T 3cr8_A 419 FSKAHRDVNVRRIGFVASE--------ITKNRGIAICAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATP-IETCESRDR 487 (552)
T ss_dssp CSHHHHHHHHHHHHHHHHH--------HHHTTCEEEECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC-----------
T ss_pred CCHHHHHHHHHHHHHHHHH--------HHhcCCEEEEecCCccHHHHHHHHHHHHHcC-CEEEEEEcCC-HHHHHHhcc
Confidence 4332232233333333332 33367888887777667788888887 4445 4555555555 577777764
No 83
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.57 E-value=7.8e-07 Score=86.65 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=27.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcC
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~g 379 (699)
++++|+++|.|||||||+|+.|+++|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 357899999999999999999999998765
No 84
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.56 E-value=1.9e-07 Score=95.03 Aligned_cols=151 Identities=14% Similarity=0.208 Sum_probs=85.1
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHH-------HHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-------EVAAL 421 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~-------~vA~~ 421 (699)
.+|++|+|+|.|||||||+|+.|+++++.. +++.|+.-|........ + .......+. .+...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~-----~is~~~~~r~~~~~~~~--~----g~~i~~~~~~g~~~~~~~~~~ 95 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYC-----HLSTGDLLREAAEKKTE--L----GLKIKNIINEGKLVDDQMVLS 95 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHTTSSSH--H----HHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCe-----EEecHHHHHHHHhccch--H----HHHHHHHHhcCCCCcHHHHHH
Confidence 368999999999999999999999987543 35555443322110000 0 000000000 01111
Q ss_pred HHHHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCc---eEEEEEEEeCCHHHHHHHHHHhhccC---------
Q 005388 422 AMEDMISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNC---KIIFLETICNDRDIIERNIRLKIQQS--------- 486 (699)
Q Consensus 422 ~l~dl~~~L~--~~G~vVIlDAtn~~~e~R~~l~el-~~~~~---~vifIE~~c~d~e~i~rrI~~r~~~s--------- 486 (699)
. +...+. ..+..+|+|+...+..+...+.++ ...+. .++++. | +++++.+|+..|....
T Consensus 96 ~---~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~--~-p~e~~~~Rl~~R~~~~~~g~~y~~~ 169 (243)
T 3tlx_A 96 L---VDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFN--V-PDEVLVNRISGRLIHKPSGRIYHKI 169 (243)
T ss_dssp H---HHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEE--C-CHHHHHHHHHTEEEETTTTEEEETT
T ss_pred H---HHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEe--C-CHHHHHHHHHcCCCCcccCcccccc
Confidence 1 122232 237789999976777777776665 33222 244444 4 4799999998775311
Q ss_pred ---C------CCCC----CCChHHHHHHHHHHHHhhhhhccCCC
Q 005388 487 ---P------DYAE----EPDFEAGLQDFKNRLANYEKVYEPVD 517 (699)
Q Consensus 487 ---p------D~s~----~~d~e~al~d~~~Ri~~y~~~yEpl~ 517 (699)
| |..+ . ..++..+.+.+|+..|.+..+|+.
T Consensus 170 ~~pp~~~~~~~~~~~~l~~-r~dd~~e~i~~Rl~~~~~~~~~l~ 212 (243)
T 3tlx_A 170 FNPPKVPFRDDVTNEPLIQ-REDDNEDVLKKRLTVFKSETSPLI 212 (243)
T ss_dssp TBCCSSTTBCTTTCCBCBC-CGGGSHHHHHHHHHHHHHHTTHHH
T ss_pred cCCCcccCccccccccccC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 0 123445678899999988877764
No 85
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.53 E-value=1.8e-07 Score=92.38 Aligned_cols=116 Identities=14% Similarity=0.192 Sum_probs=64.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH-HhhCCCCC----CCCcCCC---CHHHHHHHHHHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR-LKHGVNQS----ADFFRAD---NPEGMEARNEVAALAME 424 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr-~~~g~~~~----~~f~~~~---~~~~~~~~~~vA~~~l~ 424 (699)
.|+|+|.|||||||+|+.|++++++. +++.|++-+ ...+.... ..++... ... ....+....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~l~ 73 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIP-----HISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDE---VTIGIVKERLG 73 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHH---HHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHh
Confidence 58899999999999999999886543 455554433 22111000 0000000 010 01111111111
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHh
Q 005388 425 DMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLK 482 (699)
Q Consensus 425 dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~v-ifIE~~c~d~e~i~rrI~~r 482 (699)
.. ..|..+|+|+.......+..+.+. ...+..+ .+|.+.|+ ++++.+|+..|
T Consensus 74 ----~~-~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R 127 (216)
T 3dl0_A 74 ----KD-DCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVD-KDVLMERLTGR 127 (216)
T ss_dssp ----SG-GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECC-GGGHHHHHHTE
T ss_pred ----cc-cccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHCC
Confidence 11 237789999987888877777766 4333322 23444455 68888888877
No 86
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.52 E-value=1.5e-06 Score=86.80 Aligned_cols=145 Identities=17% Similarity=0.228 Sum_probs=84.1
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCCCCCCcCCCCHHHHHHHH----------HHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN----------EVAA 420 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~~~~~~~~~----------~vA~ 420 (699)
++|+|.|.|||||+|.|+.|+++++... ++.||. |..... .++.+..... ++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~-----istGdllR~~i~~----------~t~lg~~~~~~~~~G~lvpd~iv~ 65 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVH-----ISTGDILREAVQK----------GTPLGKKAKEYMERGELVPDDLII 65 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEE-----EEHHHHHHHHHHH----------TCHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeE-----EcHHHHHHHHHHh----------cChhhhhHHHHHhcCCcCCHHHHH
Confidence 4789999999999999999999976544 555554 432210 1111111111 1111
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhccCC-----------
Q 005388 421 LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSP----------- 487 (699)
Q Consensus 421 ~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~v-ifIE~~c~d~e~i~rrI~~r~~~sp----------- 487 (699)
.+ +...+.+ ...+|+|+---+..+.+.+..+ .+.+.++ .+|+..|+ .+++.+|+..|.....
T Consensus 66 ~l---v~~~l~~-~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~-~e~l~~Rl~~R~~~~~~g~~y~~~~~p 140 (206)
T 3sr0_A 66 AL---IEEVFPK-HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVP-DEVVIERLSGRRINPETGEVYHVKYNP 140 (206)
T ss_dssp HH---HHHHCCS-SSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEETTTBC
T ss_pred HH---HHHhhcc-CCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCC-HHHHHHHHhCCccccCCCceeeeeccC
Confidence 11 1223333 3358999988888888877766 4444432 23344455 6777788877742110
Q ss_pred CC----CCCCChHHHHHHHHHHHHhhhhhccCCC
Q 005388 488 DY----AEEPDFEAGLQDFKNRLANYEKVYEPVD 517 (699)
Q Consensus 488 D~----s~~~d~e~al~d~~~Ri~~y~~~yEpl~ 517 (699)
.- ... ..++-.+-..+|++.|++...|+-
T Consensus 141 p~~g~~l~~-r~DD~~e~i~~Rl~~Y~~~t~pl~ 173 (206)
T 3sr0_A 141 PPPGVKVIQ-REDDKPEVIKKRLEVYREQTAPLI 173 (206)
T ss_dssp CCTTCCCBC-CGGGSHHHHHHHHHHHHHHTTHHH
T ss_pred CCCCceecc-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 001 234444567899999998888763
No 87
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.52 E-value=4.6e-08 Score=97.85 Aligned_cols=147 Identities=16% Similarity=0.228 Sum_probs=77.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCC-C---CCCcCC---CCHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQ-S---ADFFRA---DNPEGMEARNEVAAL 421 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~-~---~~f~~~---~~~~~~~~~~~vA~~ 421 (699)
++++|+++|.|||||||+|+.|++++++.. ++.|++ |....+... . ..++.. ...+ ....++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~-----i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~---~~~~~~~- 76 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKH-----LSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDD---VMTRLAL- 76 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEE-----EEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHH---HHHHHHH-
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeE-----EechHHHHHhhhcCChHHHHHHHHHHcCCcCCHH---HHHHHHH-
Confidence 467899999999999999999999876543 554443 221111000 0 000000 0111 0011111
Q ss_pred HHHHHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhcc---C---------CC
Q 005388 422 AMEDMISWMHE-GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ---S---------PD 488 (699)
Q Consensus 422 ~l~dl~~~L~~-~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~---s---------pD 488 (699)
+.+.+ .+..+|+|+...+..+.+.+..+...+ .++||++ +++++.+|+..|... . |.
T Consensus 77 ------~~l~~~~~~~~vid~~~~~~~~~~~l~~~~~~~-~vi~L~~---~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~ 146 (227)
T 1zd8_A 77 ------HELKNLTQYSWLLDGFPRTLPQAEALDRAYQID-TVINLNV---PFEVIKQRLTARWIHPASGRVYNIEFNPPK 146 (227)
T ss_dssp ------HHHHTCTTSCEEEESCCCSHHHHHHHHTTSCCC-EEEEEEC---CHHHHHHHHTCEEEETTTTEEEETTTBCCS
T ss_pred ------HHHhcccCCCEEEeCCCCCHHHHHHHHHhcCCC-EEEEEEC---CHHHHHHHHHcCcCCCccCCccccccCCCC
Confidence 11221 355688899777765544444332223 4666665 588888888765311 0 00
Q ss_pred CCC----------CCChHHHHHHHHHHHHhhhhhccCC
Q 005388 489 YAE----------EPDFEAGLQDFKNRLANYEKVYEPV 516 (699)
Q Consensus 489 ~s~----------~~d~e~al~d~~~Ri~~y~~~yEpl 516 (699)
..+ . ..++..+.+.+|+..|.+..+|+
T Consensus 147 ~~~~~~~~~~~l~~-r~~~~~e~~~~r~~~y~~~~~~l 183 (227)
T 1zd8_A 147 TVGIDDLTGEPLIQ-REDDKPETVIKRLKAYEDQTKPV 183 (227)
T ss_dssp STTBCTTTCCBCBC-CGGGSHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 000 0 12344566888888887765554
No 88
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.49 E-value=1.2e-07 Score=90.60 Aligned_cols=133 Identities=17% Similarity=0.273 Sum_probs=71.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~L~~ 432 (699)
.|+++|+|||||||+|+.|++.|++. .++.|++++...+.... .++.......++... ..++..+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~-----~~d~d~~~~~~~g~~~~-~~~~~~g~~~~~~~~-------~~~~~~l~~ 72 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV-----FLDSDFLIEQKFNQKVS-EIFEQKRENFFREQE-------QKMADFFSS 72 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE-----EEEHHHHHHHHHTSCHH-HHHHHHCHHHHHHHH-------HHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcccHHHHHHcCCCHH-HHHHHcCHHHHHHHH-------HHHHHHHHc
Confidence 58999999999999999999998754 46667766644432211 122222222222211 112223443
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh-ccCCCCCCCCChHHHHHHHHHHHHhhh
Q 005388 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI-QQSPDYAEEPDFEAGLQDFKNRLANYE 510 (699)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~-~~spD~s~~~d~e~al~d~~~Ri~~y~ 510 (699)
.... |++........+. +.+. ..++||.+ +.+++.+|+..+. ..+|+.. +.+...+.|.+|.+.|.
T Consensus 73 ~~~~-vi~~g~~~~~~~~----l~~~-~~~i~l~~---~~e~~~~R~~~r~~~~r~~~~---~~~~i~~~~~~r~~~y~ 139 (175)
T 1via_A 73 CEKA-CIATGGGFVNVSN----LEKA-GFCIYLKA---DFEYLKKRLDKDEISKRPLFY---DEIKAKKLYNERLSKYE 139 (175)
T ss_dssp CCSE-EEECCTTGGGSTT----GGGG-CEEEEEEC---CHHHHTTCCCGGGTTTSCTTC---CHHHHHHHHHHHHHHHH
T ss_pred cCCE-EEECCCCEehhhH----HhcC-CEEEEEeC---CHHHHHHHHhcccCCCCCCcc---cHHHHHHHHHHHHHHHH
Confidence 3444 4443322211122 3222 35667665 6888888886653 2344433 24555555677776664
No 89
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.48 E-value=2.3e-06 Score=83.64 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=33.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
++++|+++|.|||||||+|+.|+++|+..+++++.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 4679999999999999999999999999888887664
No 90
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.41 E-value=4e-07 Score=86.31 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=30.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhC
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG 396 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g 396 (699)
.|+++|.|||||||+|+.|+++|++. +++.|++.+...|
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~-----~id~D~~~~~~~g 47 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLE-----VLDTDMIISERVG 47 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHhC
Confidence 68999999999999999999998764 4555655554443
No 91
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.38 E-value=4.9e-07 Score=93.06 Aligned_cols=139 Identities=15% Similarity=0.141 Sum_probs=73.0
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhh-CCCCCCCCcCCCCHHHHHHHHH-HHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKH-GVNQSADFFRADNPEGMEARNE-VAALAMEDMIS 428 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~-g~~~~~~f~~~~~~~~~~~~~~-vA~~~l~dl~~ 428 (699)
+.+|+++|+|||||||+++.|++.|++.. ++.|++.+... +... ..+|....+..++.++. +...+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~-----~d~d~~~~~~~~g~~i-~~i~~~~ge~~fr~~e~~~l~~l~----- 116 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTF-----FDCDTLIEQAMKGTSV-AEIFEHFGESVFREKETEALKKLS----- 116 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEE-----EEHHHHHHHHSTTSCH-HHHHHHHCHHHHHHHHHHHHHHHH-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcE-----EeCcHHHHHHhcCccH-HHHHHHhCcHHHHHHHHHHHHHHH-----
Confidence 34799999999999999999999988754 55565555443 2211 12333334444443332 222211
Q ss_pred HHhcCCeEEEEeCC--CCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh-hccCCCCCCCCC--------hHH
Q 005388 429 WMHEGGQVGIFDAT--NSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK-IQQSPDYAEEPD--------FEA 497 (699)
Q Consensus 429 ~L~~~G~vVIlDAt--n~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r-~~~spD~s~~~d--------~e~ 497 (699)
......||.++. ....+.+..+ +. ..++||.+ +.+++.+|+..+ ...+|-..+. + .+.
T Consensus 117 --~~~~~~Via~GgG~v~~~~~~~~l----~~-~~vV~L~a---~~e~l~~Rl~~~~~~~Rpl~~~~-~~~d~~~~~~~~ 185 (250)
T 3nwj_A 117 --LMYHQVVVSTGGGAVIRPINWKYM----HK-GISIWLDV---PLEALAHRIAAVGTGSRPLLHDD-ESGDTYTAALNR 185 (250)
T ss_dssp --HHCSSEEEECCGGGGGSHHHHHHH----TT-SEEEEEEC---CHHHHHHHHHC-----------------CHHHHHHH
T ss_pred --hhcCCcEEecCCCeecCHHHHHHH----hC-CcEEEEEC---CHHHHHHHHhhcCCCCCCcccCC-CcccchhhHHHH
Confidence 121345554432 2233333333 22 45778776 689999999752 2335655542 2 244
Q ss_pred HHHHHHHHHHhhhh
Q 005388 498 GLQDFKNRLANYEK 511 (699)
Q Consensus 498 al~d~~~Ri~~y~~ 511 (699)
..+.|.+|.+.|+.
T Consensus 186 l~~l~~eR~~lY~~ 199 (250)
T 3nwj_A 186 LSTIWDARGEAYTK 199 (250)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh
Confidence 55667777777653
No 92
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.37 E-value=3.7e-07 Score=91.80 Aligned_cols=116 Identities=17% Similarity=0.219 Sum_probs=63.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCC-C---CCCcC---CCCHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQ-S---ADFFR---ADNPEGMEARNEVAAL 421 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~-~---~~f~~---~~~~~~~~~~~~vA~~ 421 (699)
.++.|+|+|.|||||||+|+.|+++|++. +++.|++ |+...+... . ..++. ....+ +...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~-------~~~~ 82 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVC-----HLATGDMLRAMVASGSELGKKLKATMDAGKLVSDE-------MVLE 82 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHH-------HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCc-----eecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHH-------HHHH
Confidence 56789999999999999999999998754 4555544 321111000 0 00000 00010 1111
Q ss_pred HHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHH-Hc---CCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 422 AMEDMISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AE---GNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 422 ~l~dl~~~L~~--~G~vVIlDAtn~~~e~R~~l~el-~~---~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
++. ..+.. .|..+|+|+...+....+.+.++ .. ..-.++|+.+ +++++.+|+..|.
T Consensus 83 ~i~---~~l~~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~---~~e~~~~Rl~~R~ 144 (233)
T 1ak2_A 83 LIE---KNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSI---PDSLLIRRITGRL 144 (233)
T ss_dssp HHH---HHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEEC---CHHHHHHHHHTCE
T ss_pred HHH---HHHhcccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC---CHHHHHHHHHcCC
Confidence 111 11221 24458889865566666655554 22 1224566665 5888899997764
No 93
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.36 E-value=9.1e-06 Score=82.08 Aligned_cols=140 Identities=14% Similarity=0.092 Sum_probs=72.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh-------hhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV-------GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALA 422 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~-------gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~ 422 (699)
++.+|++.|.|||||||+++.|+++|.. +.++..... ...|+... . ... ........+. .+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~~~~~g~~i~~~~~---~-~~~---~~~~~~~ll~-~a~r~ 95 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGGVPTGEEIRKIVL---E-GND---MDIRTEAMLF-AASRR 95 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTTTCHHHHHHHHHTT---C-------CCHHHHHHHH-HHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCCCCchHHHHHHHHh---C-CCC---CCHHHHHHHH-HHHHH
Confidence 5789999999999999999999999987 655432210 11111110 0 000 1111111111 11100
Q ss_pred --H-HHHHHHHhcCCeEEEEe----------CC--CCCHHHHHHHHHHHc---CCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 423 --M-EDMISWMHEGGQVGIFD----------AT--NSSRKRRNMLMKMAE---GNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 423 --l-~dl~~~L~~~G~vVIlD----------At--n~~~e~R~~l~el~~---~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
+ +.+...+ +.|.+||+| +. +...+....+..+.. ..-.++|+.+ +++++.+|+..|..
T Consensus 96 ~~~~~~i~~~l-~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~---~~e~~~~R~~~R~~ 171 (229)
T 4eaq_A 96 EHLVLKVIPAL-KEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNV---SAEVGRERIIKNSR 171 (229)
T ss_dssp HHCCCCCHHHH-HTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEEC---CHHHHHHHHHHC--
T ss_pred HHHHHHHHHHH-HCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeC---CHHHHHHHHHhcCC
Confidence 0 0011112 268999999 43 445555555555521 1223566665 68999999987754
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHh
Q 005388 485 QSPDYAEEPDFEAGLQDFKNRLAN 508 (699)
Q Consensus 485 ~spD~s~~~d~e~al~d~~~Ri~~ 508 (699)
... ..+....+|.+|+..
T Consensus 172 ~~d------r~e~~~~~~~~rv~~ 189 (229)
T 4eaq_A 172 DQN------RLDQEDLKFHEKVIE 189 (229)
T ss_dssp ---------CCCHHHHHHHHHHHH
T ss_pred Ccc------chhhhhHHHHHHHHH
Confidence 211 122234567777754
No 94
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.36 E-value=4.9e-06 Score=80.28 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=64.4
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCC-CCH----HHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRA-DNP----EGMEARNEVAALAMED 425 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~-~~~----~~~~~~~~vA~~~l~d 425 (699)
+.+|+++|.|||||||+++.|+..+. -...++.+++++... .++..+ ... ..++.+...+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~----g~~~i~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~---- 68 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLD----NSAYIEGDIINHMVV-----GGYRPPWESDELLALTWKNITDLTVN---- 68 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSS----SEEEEEHHHHHTTCC-----TTCCCGGGCHHHHHHHHHHHHHHHHH----
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccC----CeEEEcccchhhhhc-----cccccCccchhHHHHHHHHHHHHHHH----
Confidence 35799999999999999999987432 124567776654221 112111 111 112222222221
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-H--cCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005388 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKM-A--EGNCKIIFLETICNDRDIIERNIRLKI 483 (699)
Q Consensus 426 l~~~L~~~G~vVIlDAtn~~~e~R~~l~el-~--~~~~~vifIE~~c~d~e~i~rrI~~r~ 483 (699)
+...|..+|+|.+. ....++.+.++ . ..+.++.++.+. .+.+++.+|+..|.
T Consensus 69 ----~~~~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~-~~~e~l~~R~~~r~ 123 (189)
T 2bdt_A 69 ----FLLAQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILW-TNREELLRRDALRK 123 (189)
T ss_dssp ----HHHTTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEE-CCHHHHHHHTTTSC
T ss_pred ----HHhcCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEe-CCHHHHHHHHHhcc
Confidence 22357788999864 45555555555 2 223355455444 45889899987664
No 95
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.35 E-value=2.7e-07 Score=91.42 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=26.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
.|+++|.|||||||+|+.|+++++. .+++.|++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~-----~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI-----PQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC-----CEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-----eEEeHHHH
Confidence 4899999999999999999998754 34666555
No 96
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.33 E-value=2.4e-06 Score=81.98 Aligned_cols=30 Identities=37% Similarity=0.470 Sum_probs=25.6
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCC
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~ 381 (699)
++|+++|.|||||||+|+.|+++|...|+.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~ 30 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYF 30 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 379999999999999999999998554443
No 97
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.33 E-value=1.6e-06 Score=88.82 Aligned_cols=115 Identities=13% Similarity=0.183 Sum_probs=63.5
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHH---HHhhCCCCC---------CCC------cC-CCCHHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR---RLKHGVNQS---------ADF------FR-ADNPEGM 412 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyR---r~~~g~~~~---------~~f------~~-~~~~~~~ 412 (699)
.+|+++|.|||||||+|+.|++.+++.. ++.|++. ....+.... ..| .+ ..+...+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~-----i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f 76 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPV-----VALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESA 76 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCE-----EECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeE-----EeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHH
Confidence 3799999999999999999999987544 4444432 111111000 001 11 1233333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-Hc----CCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 413 EARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AE----GNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 413 ~~~~~vA~~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el-~~----~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
... +..++ + +...|..+|+++... ..+..+ .. .++.+.++.+.+++.+++.+|+.+|..
T Consensus 77 ~~~---~~~~i----~-~~~~g~~vIl~gg~~-----~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~ 140 (253)
T 2ze6_A 77 HRR---LIFEV----D-WRKSEEGLILEGGSI-----SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVA 140 (253)
T ss_dssp HHH---HHHHH----H-TTTTSSEEEEEECCH-----HHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHH---HHHHH----H-HHhCCCCeEEeccHH-----HHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHHH
Confidence 222 22221 1 223577777775442 123333 33 456666666666766888999988865
No 98
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.30 E-value=6.7e-07 Score=84.80 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=30.9
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 394 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~ 394 (699)
+.+|+++|.|||||||+++.|+..+++ .+++.|++.+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~-----~~id~d~~~~~~ 42 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM-----EFYDSDQEIEKR 42 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTC-----EEEEHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEeccHHHHHH
Confidence 457999999999999999999998764 456666665433
No 99
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.29 E-value=4.7e-07 Score=86.84 Aligned_cols=39 Identities=31% Similarity=0.304 Sum_probs=30.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 393 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~ 393 (699)
++.+|+++|+|||||||+|+.|++++++. .++.|++.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~-----~~~~d~~~~~ 48 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLK-----YINVGDLARE 48 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCe-----EEEHHHHHhh
Confidence 34578999999999999999999997643 4666666443
No 100
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.27 E-value=1.3e-05 Score=77.15 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=26.8
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCce
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~td 383 (699)
++|+++|.|||||||+|+.|+++|...|+.+.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 37999999999999999999999966666543
No 101
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.25 E-value=5e-06 Score=82.55 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=28.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCc
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDT 382 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~t 382 (699)
++++|+++|.|||||||+|+.|+++|++..+++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 457899999999999999999999988655444
No 102
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.22 E-value=3.6e-05 Score=77.18 Aligned_cols=30 Identities=33% Similarity=0.360 Sum_probs=28.1
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCC
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi 380 (699)
+++|++.|.+||||||+++.|+++|...++
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 568999999999999999999999998887
No 103
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.21 E-value=7e-07 Score=87.33 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=33.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
++++|+++|.|||||||+|+.|+++|+..+++++++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4679999999999999999999999999888887653
No 104
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.19 E-value=1e-06 Score=99.36 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=54.0
Q ss_pred ccCCCCCCccchhhHHHHHhhhcCCCCCccEEEEEEccCCCChhHHHHHHHHHHhh-cC-CCceEeehh
Q 005388 322 ETKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LG-HDTKHFNVG 388 (699)
Q Consensus 322 ~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~-~g-i~tdv~~~g 388 (699)
......|++......+.+....+.++.+.+.+|||+|+|||||||+|++|+++|++ .| ..+..++.|
T Consensus 366 r~G~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD 434 (511)
T 1g8f_A 366 RVGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN 434 (511)
T ss_dssp HHTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred hCCCCCCccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCC
Confidence 35667888888888888888887766777899999999999999999999999997 54 444556544
No 105
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.16 E-value=7.1e-06 Score=83.45 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=35.2
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhc-----CCCceEeehhhHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-----GHDTKHFNVGKYR 391 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~-----gi~tdv~~~gdyR 391 (699)
.++++|.++|.|||||||+|+.|++.|++. +..+.+++.|+|-
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 367899999999999999999999998864 3456678887773
No 106
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.14 E-value=0.00015 Score=72.62 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=31.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
++++|++.|.+||||||+++.|+++|...++++...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 468999999999999999999999999888877554
No 107
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.14 E-value=8.6e-05 Score=75.68 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=31.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCC-ceEe
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHD-TKHF 385 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~-tdv~ 385 (699)
++.+|++.|.+||||||+++.|+++|...+++ +...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 46799999999999999999999999988887 4433
No 108
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.11 E-value=6.8e-06 Score=80.73 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
++.+|+++|.|||||||+++.|++.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 467899999999999999999999874
No 109
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.10 E-value=4.5e-06 Score=80.76 Aligned_cols=38 Identities=29% Similarity=0.487 Sum_probs=29.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH-HhhcCCCceEeehhhHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY-LRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~-L~~~gi~tdv~~~gdyRr 392 (699)
++.+|+++|.|||||||+|+.|++. +++. +++.|++-+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~-----~id~d~~~~ 47 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQ-----HLEVGKLVK 47 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEE-----EEEHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCE-----EeeHHHHHH
Confidence 4568999999999999999999998 5543 456565533
No 110
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.09 E-value=1.7e-05 Score=80.79 Aligned_cols=146 Identities=17% Similarity=0.246 Sum_probs=78.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH-HHHhhCCCCCCCCcCCCCHHHHHHHH----------HH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN----------EV 418 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy-Rr~~~g~~~~~~f~~~~~~~~~~~~~----------~v 418 (699)
..+-+-+.|.|||||||+|+.|+++++... ++.|++ |..... . ++.+..... ++
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~-----is~gdllR~~~~~-~---------t~lG~~i~~~~~~G~lvpdei 71 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQ-----ISTGDMLRAAVKA-G---------TPLGVEAKTYMDEGKLVPDSL 71 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCE-----ECHHHHHHHHHHT-T---------CHHHHHHHHHHTTTCCCCHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCe-----eechHHHHHhccC-C---------ChHHHHHHHHHhhccccccHH
Confidence 445678999999999999999999986554 444444 332111 0 011100000 11
Q ss_pred HHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccC----------
Q 005388 419 AALAMEDMISWMHE--GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQS---------- 486 (699)
Q Consensus 419 A~~~l~dl~~~L~~--~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~s---------- 486 (699)
...++. +.|.+ .+..+|+|+.--+..+-+.+.+....--.+++|+| +++++.+|+..|....
T Consensus 72 ~~~ll~---~~l~~~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldv---p~e~l~~Rl~~R~~~~~~G~~Yh~~~ 145 (230)
T 3gmt_A 72 IIGLVK---ERLKEADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDV---PFSEIIERMSGRRTHPASGRTYHVKF 145 (230)
T ss_dssp HHHHHH---HHHHSGGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECC---CHHHHHHHHHTEEEETTTTEEEETTT
T ss_pred HHHHHH---HHHhCcccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeC---CHHHHHHHHHcCCcccccCCcccccC
Confidence 111111 12221 23457889965565544444332111123556655 5888999998875310
Q ss_pred -C-------CCCC----CCChHHHHHHHHHHHHhhhhhccCCC
Q 005388 487 -P-------DYAE----EPDFEAGLQDFKNRLANYEKVYEPVD 517 (699)
Q Consensus 487 -p-------D~s~----~~d~e~al~d~~~Ri~~y~~~yEpl~ 517 (699)
| |..+ . ..++-.+-+.+|++.|.+.-+|+-
T Consensus 146 ~pp~~~~~~d~~g~~L~~-R~DD~~e~i~~Rl~~y~~~t~pl~ 187 (230)
T 3gmt_A 146 NPPKVEGKDDVTGEPLVQ-RDDDKEETVKKRLDVYEAQTKPLI 187 (230)
T ss_dssp BCCSSTTBCTTTCCBCBC-CGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCcCCCccCcccc-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 1 234556668899999988777763
No 111
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.05 E-value=7.4e-06 Score=81.17 Aligned_cols=31 Identities=16% Similarity=0.054 Sum_probs=27.0
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCC
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~ 381 (699)
+.+|.+.|.+||||||+|+.|+++|++..++
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 4689999999999999999999998765433
No 112
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.05 E-value=2.2e-05 Score=75.85 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=23.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
+|+++|.|||||||+|+.|+++|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 6999999999999999999999875
No 113
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.04 E-value=3.1e-05 Score=78.24 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=29.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
.+++|.+.|.+||||||+|+.|+++|++..++.+++
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~ 48 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDIL 48 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHH
Confidence 367999999999999999999999988765554443
No 114
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.99 E-value=4.9e-05 Score=79.00 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=29.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
++++|+++|.|||||||+|+.|+ .+++ .+++.|++.+
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~-----~~id~D~~~~ 110 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGA-----YIIDSDHLGH 110 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTC-----EEEEHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCC-----cEEehhHHHH
Confidence 57899999999999999999999 4543 4566666543
No 115
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.97 E-value=4e-05 Score=77.70 Aligned_cols=36 Identities=22% Similarity=0.156 Sum_probs=28.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc----CCCceEe
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL----GHDTKHF 385 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~----gi~tdv~ 385 (699)
++++|++.|.+||||||+++.|+++|... ++++...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 57899999999999999999999999887 7766544
No 116
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.95 E-value=3.3e-05 Score=76.17 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=31.3
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
++..++|.++|.+||||||+|+.|++.++. .+++.|++-+
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg~-----~vid~D~~~~ 48 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGA-----HVVNVDRIGH 48 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHCC-----EEEEHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCC-----EEEECcHHHH
Confidence 346789999999999999999999998654 4566666633
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.94 E-value=3.6e-05 Score=73.89 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=61.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
++.+|+++|.|||||||+++.|+.. .+.....++.+++++.... .....|.............. +......
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~~~~~~-~~~~~~~~~~~~~~~~v~~~-----l~~~~~~ 78 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDDLWGYIKH-GRIDPWLPQSHQQNRMIMQI-----AADVAGR 78 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTHHHHTCCS-SCCCTTSSSHHHHHHHHHHH-----HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccchhhhhhc-ccccCCccchhhhhHHHHHH-----HHHHHHH
Confidence 4678999999999999999999975 2333446777777553211 11123333221111111111 1111111
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 005388 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (699)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r 482 (699)
+...|..+++|+.... ..++.+..+ ...+.+++ .-| +++++..|+..+
T Consensus 79 ~~~~~~~~~~~~~~~~-~~l~~~~~~-~~~~~~ls--~~~-~~~v~~~R~~~r 126 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRP-DWLPAFTAL-ARPLHYIV--LRT-TAAEAIERCLDR 126 (191)
T ss_dssp HHHTSCEEEECSCCCT-TTTHHHHTT-CSCEEEEE--EEC-CHHHHHHHHHTT
T ss_pred HhccCCeEEEeccCcH-HHHHHHHhc-CCCeEEEE--ecC-CHHHHHHHHHhc
Confidence 2335777888885432 122222211 22333334 434 588888888766
No 118
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.94 E-value=7e-05 Score=73.88 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=29.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
++++|+++|.|||||||+++.|++ ++. .+++.|++-+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~-----~~id~D~~~~ 39 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGI-----NVIDADIIAR 39 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTC-----EEEEHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCC-----EEEEccHHHH
Confidence 468999999999999999999987 543 4566655543
No 119
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.90 E-value=3.4e-05 Score=74.93 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=29.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
+|.++|.|||||||+|+.|++.|+. .+++.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~-----~~~d~d~~~~ 38 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV-----PYLSSGLLYR 38 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC-----CEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC-----ceeccchHHH
Confidence 8999999999999999999999874 3466666554
No 120
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.88 E-value=4.4e-05 Score=73.81 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=30.5
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
..++.+|.++|.|||||||+|+.|++. + ..+++.|++.+
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g-----~~~id~d~~~~ 43 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-G-----YPVLDLDALAA 43 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-T-----CCEEEHHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-C-----CEEEcccHHHH
Confidence 346889999999999999999999986 3 34566666543
No 121
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.87 E-value=0.00019 Score=68.70 Aligned_cols=133 Identities=15% Similarity=0.168 Sum_probs=76.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~~ 429 (699)
++-++.|+|.+||||||+++.+. ....+++.+.+|.......... + .....++.....+...+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~-------~~~~~~~~d~~~g~~~~~~~~~-~---~~~~~~~~~~~~~~~~~------ 70 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF-------KPTEVISSDFCRGLMSDDENDQ-T---VTGAAFDVLHYIVSKRL------ 70 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS-------CGGGEEEHHHHHHHHCSSTTCG-G---GHHHHHHHHHHHHHHHH------
T ss_pred CCEEEEEECCCCCCHHHHHHHHc-------cCCeEEccHHHHHHhcCcccch-h---hHHHHHHHHHHHHHHHH------
Confidence 46789999999999999999843 1234566666665332211111 1 11222333333333322
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHh
Q 005388 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLAN 508 (699)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~al~d~~~Ri~~ 508 (699)
..|..+++|+++.....|++...+ ........++-+..+ ...+..+.+.|.. . .. +++.+....+++..
T Consensus 71 --~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEP-t~~Ld~~~~~R~~----~-~~--~~~vi~~~~~~l~~ 140 (171)
T 4gp7_A 71 --QLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLP-EKVCQERNKNRTD----R-QV--EEYVIRKHTQQMKK 140 (171)
T ss_dssp --HTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCC-HHHHHHHHHTCSS----C-CC--CHHHHHHHHHHHHH
T ss_pred --hCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCC-HHHHHHHHhcccC----C-CC--CHHHHHHHHHHhhh
Confidence 268899999999998776666666 445555555555333 4566666655542 1 23 45555555555554
Q ss_pred h
Q 005388 509 Y 509 (699)
Q Consensus 509 y 509 (699)
.
T Consensus 141 ~ 141 (171)
T 4gp7_A 141 S 141 (171)
T ss_dssp H
T ss_pred h
Confidence 3
No 122
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.86 E-value=6.3e-06 Score=80.64 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=27.5
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCce
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~td 383 (699)
++|+++|.|||||||+++.|+++|...++++.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~ 32 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA 32 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 37999999999999999999999987665543
No 123
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.84 E-value=6.9e-05 Score=72.66 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=23.0
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+.+|.++|.+||||||+++.|+..+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999998753
No 124
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.82 E-value=9.1e-05 Score=74.73 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=26.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcC
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~g 379 (699)
+|.+|+++|.|||||||+++.|+++++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 467999999999999999999999987544
No 125
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.76 E-value=0.00024 Score=69.21 Aligned_cols=35 Identities=26% Similarity=0.201 Sum_probs=27.7
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
++|.++|.|||||||+++.|+. ++ ..+++.|++.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg-----~~~id~d~~~~ 37 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LG-----VPLVDADVVAR 37 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TT-----CCEEEHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CC-----CcccchHHHHH
Confidence 5799999999999999999987 43 33566666644
No 126
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.73 E-value=4.3e-05 Score=74.42 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=27.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
+|.++|.|||||||+++.|++ ++ ..+++.|++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g-----~~~i~~d~~~~ 36 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG-----AYVLDADKLIH 36 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT-----CEEEEHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC-----CEEEEccHHHH
Confidence 689999999999999999998 64 44566666544
No 127
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.72 E-value=0.00013 Score=78.11 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=28.2
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCce
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~td 383 (699)
..++.+|+++|.+||||||||..|+++|+...+++|
T Consensus 37 ~~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~D 72 (339)
T 3a8t_A 37 HRKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSD 72 (339)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECC
T ss_pred ccCCceEEEECCCCCCHHHHHHHHHHHCCCcEEccc
Confidence 345679999999999999999999998764433333
No 128
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.70 E-value=0.00037 Score=70.40 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=32.6
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhh-cCCCceE
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKH 384 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~-~gi~tdv 384 (699)
.++++|++.|++||||||+++.|+++|.. .|+++.+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 46789999999999999999999999998 8887765
No 129
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.68 E-value=3e-05 Score=76.63 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=24.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
++.+|+++|.+||||||+++.|++.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998764
No 130
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.67 E-value=0.00011 Score=71.90 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=28.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
.+.+|.++|.|||||||+|+.|++.+. ...+++.|++
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 567899999999999999999998652 2345666555
No 131
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.66 E-value=0.0015 Score=64.85 Aligned_cols=156 Identities=13% Similarity=0.124 Sum_probs=75.7
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee-------hhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHH--HHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN-------VGKYRRLKHGVNQSADFFRADNPEGMEARNEV--AALA 422 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~-------~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~v--A~~~ 422 (699)
..|++-|..||||||.++.|+++|. .++++.... ....|+...... .........+... +...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~eP~~t~~g~~ir~~l~~~~-------~~~~~~~~lLf~a~R~~~~ 74 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTREPGGVPTGEEIRKIVLEGN-------DMDIRTEAMLFAASRREHL 74 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEESSTTCHHHHHHHHHHHSSC-------CCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEeeCCCCChHHHHHHHHHhccc-------CCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999996 355544321 122344332211 1122221111111 1111
Q ss_pred HHHHHHHHhcCCeEEEEeCC------------CCCHHHHHHHHHHHcCCc---eEEEEEEEeCCHHHHHHHHHHhhccCC
Q 005388 423 MEDMISWMHEGGQVGIFDAT------------NSSRKRRNMLMKMAEGNC---KIIFLETICNDRDIIERNIRLKIQQSP 487 (699)
Q Consensus 423 l~dl~~~L~~~G~vVIlDAt------------n~~~e~R~~l~el~~~~~---~vifIE~~c~d~e~i~rrI~~r~~~sp 487 (699)
.+.+...|. .|.+||+|-- +...+.-..+..+...+. -++|+.+ ++++..+|+.+|... .
T Consensus 75 ~~~i~p~l~-~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~---~~e~~~~Ri~~r~~~-~ 149 (205)
T 4hlc_A 75 VLKVIPALK-EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNV---SAEVGRERIIKNSRD-Q 149 (205)
T ss_dssp HHTHHHHHH-TTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEEC---CHHHHHHHHHC------
T ss_pred HHHHHHHHH-cCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCC---CHHHHHHHHHhcCCc-c
Confidence 122222333 5999999932 122222222333221121 3677777 799999999776442 2
Q ss_pred CCCCCCChHHHHHHHHHHHH-hhhhhccCCCCCCceEEeec
Q 005388 488 DYAEEPDFEAGLQDFKNRLA-NYEKVYEPVDEGSYIKMIDM 527 (699)
Q Consensus 488 D~s~~~d~e~al~d~~~Ri~-~y~~~yEpl~e~~yik~in~ 527 (699)
|. .|.--.+|.+|+. .|.+..+.- ...++.||.
T Consensus 150 dr-----~e~~~~~f~~~v~~~Y~~l~~~~--~~~~~~IDa 183 (205)
T 4hlc_A 150 NR-----LDQEDLKFHEKVIEGYQEIIHNE--SQRFKSVNA 183 (205)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHSC--CTTEEEEET
T ss_pred cc-----hhccCHHHHHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 21 1222235666653 344443311 123556675
No 132
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.63 E-value=8.3e-05 Score=71.91 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=22.4
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.+|+++|.+||||||+.+.|...+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3688999999999999999998765
No 133
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.61 E-value=0.00018 Score=76.58 Aligned_cols=32 Identities=34% Similarity=0.189 Sum_probs=26.7
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCc
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDT 382 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~t 382 (699)
+.+|+++|.+||||||+|+.|++.+++..++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~ 36 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISV 36 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEec
Confidence 46899999999999999999999976544333
No 134
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.60 E-value=0.001 Score=66.64 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=30.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
++.+|.++|.|||||||+++.|++.|++. +++.|++.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~-----~~d~d~~~~ 52 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFT-----YLDTGAMYR 52 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCE-----EEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCc-----eecCCCeeE
Confidence 46689999999999999999999987643 455565544
No 135
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.59 E-value=0.00011 Score=72.21 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.7
Q ss_pred EEEEccCCCChhHHHHHHHHHHh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~ 376 (699)
||++|.+|+|||||.++|.+.+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987753
No 136
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.58 E-value=0.0013 Score=64.52 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=29.1
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyR 391 (699)
|++|+++|.|||||||+|+.|++.+++. +++.|++-
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~-----~~~~d~~~ 38 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMI-----YVDTGAMY 38 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCE-----EEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCc-----eecCChHH
Confidence 5789999999999999999999987643 45555553
No 137
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.57 E-value=0.00027 Score=70.84 Aligned_cols=134 Identities=13% Similarity=0.041 Sum_probs=74.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCC----------CCCCcCCCC-----------
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQ----------SADFFRADN----------- 408 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~----------~~~f~~~~~----------- 408 (699)
.-..|-++|.+||||||+|+.|++ +++.. ++.|.+-+.....+. ...++.+++
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~g~~v-----idaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~v 81 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-RGASL-----VDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALI 81 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-TTCEE-----EEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-CCCcE-----EECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHH
Confidence 345799999999999999999997 55544 555554443322111 122333221
Q ss_pred ---HHHHHHHHHHHHH-HHHHHHHHHhcC-CeEEEEeCCCCCH-HHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 005388 409 ---PEGMEARNEVAAL-AMEDMISWMHEG-GQVGIFDATNSSR-KRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (699)
Q Consensus 409 ---~~~~~~~~~vA~~-~l~dl~~~L~~~-G~vVIlDAtn~~~-e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r 482 (699)
++..+.++.+..- ..+.+..++.+. +..||+|+.-+.. ..... + .+ .+++|.+ ++++..+|+..|
T Consensus 82 F~d~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~~~---~--~D-~vi~V~a---p~e~r~~Rl~~R 152 (210)
T 4i1u_A 82 FSDEDARRRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRNWKA---R--CD-RVLVVDC---PVDTQIARVMQR 152 (210)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHHHHH---H--CS-EEEEEEC---CHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCCccc---c--CC-eEEEEEC---CHHHHHHHHHhc
Confidence 1222233333222 233455566544 4578999987665 32211 1 12 3556655 588888888777
Q ss_pred hccCCCCCCCCChHHHHHHHHHHHHhhh
Q 005388 483 IQQSPDYAEEPDFEAGLQDFKNRLANYE 510 (699)
Q Consensus 483 ~~~spD~s~~~d~e~al~d~~~Ri~~y~ 510 (699)
. +. +.+++ .+|+..|.
T Consensus 153 d-------g~-s~eea----~~ri~~Q~ 168 (210)
T 4i1u_A 153 N-------GF-TREQV----EAIIARQA 168 (210)
T ss_dssp H-------CC-CHHHH----HHHHHHSC
T ss_pred C-------CC-CHHHH----HHHHHHcC
Confidence 4 23 55554 45666553
No 138
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.49 E-value=0.0048 Score=60.68 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=30.3
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
++|++-|..||||||.++.|+++|...|+++...
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4789999999999999999999999988877554
No 139
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=97.43 E-value=0.00027 Score=63.25 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=57.4
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceE-EEEecCCCCCceeeEEEEecCCCCCcee
Q 005388 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWE-LSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (699)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~-~~l~~~~~~~~leyKf~~~~~~~~~~~~ 105 (699)
.|.++-|..+ + .=+.+.|-.. +.+|+|++..+++|+...++.|. .+++++. ...||||| . +....
T Consensus 3 ~g~~vtiyY~---~---g~~~vylHyg-~~~g~Wt~~~~v~M~~~~~~gw~~~TI~l~~-g~~~~~~F--~----dG~~~ 68 (104)
T 2laa_A 3 TGNKVTIYYK---K---GFNSPYIHYR-PAGGSWTAAPGVKMQDAEISGYAKITVDIGS-ASQLEAAF--N----DGNNN 68 (104)
T ss_dssp CCCEEEEEEE---C---SSSSCEEEEE-ETTSCCCSSSCEECEEETTTTEEEEEEECTT-CSCEEEEE--E----CSSSC
T ss_pred CCCEEEEEEc---C---CCCcEEEEEc-CCCCCCCcCCccccccccCCCeEEEEEECCC-CCEEEEEE--e----CCCCc
Confidence 4566666666 2 2334444444 77799999999999999888995 9999986 46899999 2 22357
Q ss_pred eccCCCccccCC
Q 005388 106 VEEGPNRLLTGG 117 (699)
Q Consensus 106 wE~g~NR~l~~~ 117 (699)
||++.||-...+
T Consensus 69 WDNn~g~Nyt~~ 80 (104)
T 2laa_A 69 WDSNNTKNYSFS 80 (104)
T ss_dssp EESTTTSCEEEC
T ss_pred CcCCCCccEEec
Confidence 999999987754
No 140
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.41 E-value=0.0019 Score=64.32 Aligned_cols=124 Identities=9% Similarity=0.010 Sum_probs=64.4
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHH----hhCCCCCCCC-cCCCCHHHHHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL----KHGVNQSADF-FRADNPEGMEARNEVAALAM 423 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~----~~g~~~~~~f-~~~~~~~~~~~~~~vA~~~l 423 (699)
..+++|+++|+|||||+|+|+.|.+.++.. ...++..+|.-|. ..|+..+..+ .....++.-+.+..+.....
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~--~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R 86 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGAD--VCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKR 86 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTT--TEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCC--CceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999877543 3455666665442 2333322211 11223322223333332222
Q ss_pred HH-----HHHHHhc-CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHH
Q 005388 424 ED-----MISWMHE-GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERN 478 (699)
Q Consensus 424 ~d-----l~~~L~~-~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rr 478 (699)
.. +...+.. ...++|+|++-...+. +.+++.-...+.++.|++ ++++..+|
T Consensus 87 ~~d~~~~~~~~~~~~~~~~vII~dvR~~~Ev-~~fr~~~g~~~~iirI~a---s~~~R~~R 143 (202)
T 3ch4_B 87 QADPGFFCRKIVEGISQPIWLVSDTRRVSDI-QWFREAYGAVTQTVRVVA---LEQSRQQR 143 (202)
T ss_dssp HHCTTTTHHHHSBTCCCSEEEECCCCSHHHH-HHHHHHHGGGEEEEEEEE---CHHHHHHT
T ss_pred hcCchHHHHHHHHhcCCCcEEEeCCCCHHHH-HHHHHhCCCcEEEEEEEC---CHHHHHHH
Confidence 21 1111111 1347888887655332 333333222355566665 57776666
No 141
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.32 E-value=0.00031 Score=71.65 Aligned_cols=28 Identities=25% Similarity=0.186 Sum_probs=24.9
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.++++|++.|.+||||||+++.|+++|.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999999873
No 142
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.30 E-value=0.00046 Score=66.72 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=24.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
++++|+++|.|||||||+++.|+++|
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999987
No 143
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.29 E-value=0.00072 Score=74.98 Aligned_cols=43 Identities=30% Similarity=0.468 Sum_probs=38.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
+|.+|+|+|+||+||||++..|+.+|...|.++-+++.|.||-
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 5899999999999999999999999998898888887766543
No 144
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.26 E-value=0.00066 Score=65.64 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=23.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.+.+|+++|.|||||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999999876
No 145
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.13 E-value=0.0045 Score=62.89 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=30.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
.|++|+++|.|||||||+|+.|++.|++. .++.|.+.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~-----~~d~g~~~r 45 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGAR-----YLDTGAMYR 45 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC-----cccCCcHHH
Confidence 57899999999999999999999998754 355555433
No 146
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.02 E-value=0.0032 Score=63.12 Aligned_cols=121 Identities=12% Similarity=0.148 Sum_probs=63.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh--cCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHH------HH--
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNE------VA-- 419 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~--~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~------vA-- 419 (699)
.+.+++++|.+|||||||.+.|...+.. ...... +.. |..+.+.....+|... ....+..+.. .+
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~-~tt---r~~~~~e~~gi~y~fq-~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVS-HTT---RQPRPGEVHGEHYFFV-NHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCC-EEC---SCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEE-ecC---CCCCcccccCceEEEC-CHHHHHHHHhcCHHHHHHHH
Confidence 3568999999999999999999987641 111111 111 1111111111122111 1112211100 00
Q ss_pred -H----HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 005388 420 -A----LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (699)
Q Consensus 420 -~----~~l~dl~~~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r 482 (699)
. .-.+.+..++. .|.++|+| .....+..++++...+ .++|| ...+.+.+++|+..|
T Consensus 90 ~~~~yg~~~~~v~~~l~-~G~illLD---LD~~~~~~i~~~l~~~-~tI~i--~th~~~~l~~Rl~~r 150 (219)
T 1s96_A 90 FGNYYGTSREAIEQVLA-TGVDVFLD---IDWQGAQQIRQKMPHA-RSIFI--LPPSKIELDRRLRGR 150 (219)
T ss_dssp TTEEEEEEHHHHHHHHT-TTCEEEEE---CCHHHHHHHHHHCTTC-EEEEE--ECSSHHHHHHHHHTT
T ss_pred HhccCCCCHHHHHHHHh-cCCeEEEE---ECHHHHHHHHHHccCC-EEEEE--ECCCHHHHHHHHHHc
Confidence 0 00011222333 59999999 8888888888873333 33343 346789999998554
No 147
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.01 E-value=0.00037 Score=72.90 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=34.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyR 391 (699)
++.+|.++|-+||||||+|+.|++.|+..+....+++.|+|-
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 467899999999999999999999998878888888888874
No 148
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.90 E-value=0.0016 Score=63.72 Aligned_cols=44 Identities=27% Similarity=0.294 Sum_probs=36.3
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyR 391 (699)
..++.+|.++|.+||||||+++.|+..+...+.++.+++.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 34678999999999999999999999987767777666666553
No 149
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.00045 Score=66.41 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.1
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+.+|+++|.+|||||||++.|.+.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999998754
No 150
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.88 E-value=0.0029 Score=69.98 Aligned_cols=44 Identities=32% Similarity=0.421 Sum_probs=38.2
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
.+|.+|+|+|++|+||||++..|+.+|...+.++-+++.|.||-
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~ 138 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP 138 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence 35889999999999999999999999998888888887766543
No 151
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.83 E-value=0.006 Score=58.03 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=32.7
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh-hcCCCceEeehhhHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYR 391 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~-~~gi~tdv~~~gdyR 391 (699)
+..++++|.||+||||+++.|+..+. ..|..+..++..++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~ 79 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 45789999999999999999999886 556666667665543
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.79 E-value=0.0047 Score=65.12 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=36.0
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyR 391 (699)
.++.+|+++|.+|+||||++..|+..+...+.++-+++.|.+|
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 3578999999999999999999999998777777777665543
No 153
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.76 E-value=0.00052 Score=67.56 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=29.3
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr 392 (699)
+.+|.++|.|||||||+|+.|++.+++. .++.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~-----~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWH-----LLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC-----cccCcceee
Confidence 4689999999999999999999987643 355555543
No 154
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.57 E-value=0.0082 Score=60.19 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=25.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
++++|++.|.+||||||+++.|+++|..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4678999999999999999999999876
No 155
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.55 E-value=0.0079 Score=67.71 Aligned_cols=43 Identities=33% Similarity=0.470 Sum_probs=35.8
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyR 391 (699)
.++.+|+++|.||+||||++.+|+.++...|.++-+++.|.||
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 4577999999999999999999999998888888888776554
No 156
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.50 E-value=0.006 Score=67.39 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=38.1
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhc-CCCceEeehhhHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKYR 391 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~-gi~tdv~~~gdyR 391 (699)
.+|.+|+++|.+|+||||++..|+.+|... |.++-+++.|-+|
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 357899999999999999999999999988 9999998887654
No 157
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.45 E-value=0.0065 Score=60.34 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=16.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHH-HHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLT-RYL 375 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La-~~L 375 (699)
.+.+|.++|.+||||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34589999999999999999999 765
No 158
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.41 E-value=0.012 Score=62.28 Aligned_cols=42 Identities=29% Similarity=0.382 Sum_probs=35.4
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
.++.+|.++|.+|+||||++..|+..+...+.++-+++.|-+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 357899999999999999999999999877877777765543
No 159
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.37 E-value=0.0047 Score=66.20 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=28.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
+.+|+++|.+||||||+|+.|++.|+. .+++.|.|
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~-----~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNG-----EIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTE-----EEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCC-----ceeccccc
Confidence 468999999999999999999999763 45555553
No 160
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.33 E-value=0.031 Score=57.35 Aligned_cols=31 Identities=35% Similarity=0.488 Sum_probs=26.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCC
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi 380 (699)
.+.-|+++|.||+|||++|+.|++.+...+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 3446899999999999999999999976544
No 161
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.29 E-value=0.0058 Score=59.86 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=31.1
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
..++.+|.++|.+|||||||++.|+..+...|...-.+..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d 59 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecC
Confidence 34678999999999999999999999987433334444443
No 162
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.29 E-value=0.017 Score=60.93 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=25.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
.+..++++|.||+||||+|+.+++.+...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34589999999999999999999988543
No 163
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.28 E-value=0.0013 Score=66.84 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=26.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcC
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~g 379 (699)
.+.+|.++|.+||||||+++.|+++|++..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 456899999999999999999999987644
No 164
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.27 E-value=0.0039 Score=65.17 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=33.6
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcC--CCceEe-ehhhH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG--HDTKHF-NVGKY 390 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~g--i~tdv~-~~gdy 390 (699)
..+|.+|.++|.+||||||+|+.|++.+...+ .++.++ ..|+|
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 45789999999999999999999999997543 334444 66655
No 165
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.27 E-value=0.016 Score=55.18 Aligned_cols=28 Identities=36% Similarity=0.374 Sum_probs=24.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCC
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~gi~ 381 (699)
++++|.||+|||++++.+++.+...+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 68 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWR 68 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccc
Confidence 8999999999999999999988654433
No 166
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.21 E-value=0.017 Score=63.74 Aligned_cols=42 Identities=36% Similarity=0.366 Sum_probs=36.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyR 391 (699)
++.+|+++|.+|+||||++..|+..+...+.++-+++.|-+|
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 577899999999999999999999998878888887765444
No 167
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.20 E-value=0.0075 Score=63.93 Aligned_cols=28 Identities=39% Similarity=0.371 Sum_probs=25.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.|.+|+++|.+||||||||..|++.++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~ 36 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPV 36 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCC
Confidence 4678999999999999999999998653
No 168
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.15 E-value=0.007 Score=59.95 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
++.+|+++|.+|+|||||.+.|.+.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456799999999999999999998754
No 169
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.14 E-value=0.016 Score=53.97 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
+..++++|.||+|||++|+.+++.+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999999864
No 170
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.12 E-value=0.0064 Score=64.59 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=24.2
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
+.+|+++|.+||||||||..|++.++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCcc
Confidence 568999999999999999999998653
No 171
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.01 E-value=0.015 Score=56.19 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=32.6
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
..|+++|-||+||||+|++|+..+...+.+...++..++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 568899999999999999999998877777766766544
No 172
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.01 E-value=0.0031 Score=63.16 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=24.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+|++|++.|.+||||||+++.|+++|.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 368999999999999999999999974
No 173
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.95 E-value=0.019 Score=60.12 Aligned_cols=40 Identities=33% Similarity=0.459 Sum_probs=34.7
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
+.+|+++|.+|+||||++..|+..+...+.++-+++.|-+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 6788999999999999999999999877888877776644
No 174
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.86 E-value=0.029 Score=58.81 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=24.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.+..++++|.||+||||+++.+++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4457899999999999999999998854
No 175
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.85 E-value=0.0079 Score=58.74 Aligned_cols=40 Identities=20% Similarity=0.067 Sum_probs=33.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
+..++++|.||+||||+|+.+++.+...+.....++..++
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 4568899999999999999999999877777777766554
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.84 E-value=0.065 Score=58.98 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=29.9
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhc--CCCceEeehhh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGK 389 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~--gi~tdv~~~gd 389 (699)
+--++++|.||+||||+|+.|+..+... +.+...++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 3458999999999999999999988654 45555555543
No 177
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.84 E-value=0.012 Score=64.50 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=25.0
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
+.+|+++|.+||||||||..|++.++..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~ 29 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGE 29 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEE
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCe
Confidence 4689999999999999999999998743
No 178
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.83 E-value=0.013 Score=65.81 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=33.0
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
.++.+|.|+|.+||||||+.+.|+..+...+.+..+.+.+.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF 332 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence 467899999999999999999999988765555555444444
No 179
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.83 E-value=0.039 Score=57.46 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=31.1
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
..++++|.||+||||+|+.|+..+...+.+...++..++
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 358899999999999999999998655666666665444
No 180
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.82 E-value=0.011 Score=61.42 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=31.6
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
...|..++++|.||+|||++|++|++.++ .+...++.+++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~---~~~i~v~~~~l 72 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG---INPIMMSAGEL 72 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT---CCCEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCEEEEeHHHh
Confidence 34677889999999999999999999974 55556665544
No 181
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.79 E-value=0.0074 Score=58.38 Aligned_cols=35 Identities=20% Similarity=0.090 Sum_probs=31.1
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
.+|+++|.+||||||++.+|.+.|...+.++-++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 47999999999999999999999988888877773
No 182
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.76 E-value=0.033 Score=53.57 Aligned_cols=28 Identities=32% Similarity=0.286 Sum_probs=24.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
+.+++++|.||+||||+++.+++.+...
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3478999999999999999999988753
No 183
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.76 E-value=0.01 Score=63.07 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=34.3
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhh--cCCCceEeehhhH
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 390 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~--~gi~tdv~~~gdy 390 (699)
...|++|.++|.+||||||+++.|...+.. .+..+.++..|+|
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 567899999999999999999999998864 2345566666665
No 184
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.72 E-value=0.039 Score=58.65 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=32.9
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
.++.+|.|+|.+|+||||+.+.|+..+...+.+..+...|
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 4688999999999999999999999988766665555443
No 185
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.66 E-value=0.06 Score=56.32 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=24.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.+.-|+|+|.||+|||++|++|+..++.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~ 77 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANS 77 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCC
Confidence 4557999999999999999999998653
No 186
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.65 E-value=0.042 Score=55.82 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=22.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+.-++++|.||+|||++|++|++.++
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 44589999999999999999998864
No 187
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.64 E-value=0.04 Score=54.94 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.+.-|+++|.||+|||++|++|++.++
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 344588999999999999999999864
No 188
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.57 E-value=0.053 Score=57.93 Aligned_cols=109 Identities=12% Similarity=0.073 Sum_probs=61.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH----HHHh----hCCCCCCCCcCCCCHHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY----RRLK----HGVNQSADFFRADNPEGMEARNEVAAL 421 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy----Rr~~----~g~~~~~~f~~~~~~~~~~~~~~vA~~ 421 (699)
+.-++++.|-||+||||+|..++..+...+.++-+|+...= ..+. .+.....-....-.......+...+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~-- 122 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCF-- 122 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHH--
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHH--
Confidence 45689999999999999999999887766667666654321 1111 0100000000001111122111111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEEE
Q 005388 422 AMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLET 467 (699)
Q Consensus 422 ~l~dl~~~L~~~G~vVIlDAtn~~~e-~R~~l~el-~~~-~~~vifIE~ 467 (699)
..+.+ ..+.|.|..+.+.. -|..++.+ .++ ++.+++|.-
T Consensus 123 ------~~l~~-~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 123 ------DHLSQ-KKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp ------HHHHH-SCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred ------HHHhc-CCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 12322 45777777666654 57777777 566 789999986
No 189
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.52 E-value=0.0089 Score=58.11 Aligned_cols=27 Identities=37% Similarity=0.406 Sum_probs=24.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
++.+|.++|.+||||||+++.|+..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999999876
No 190
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.50 E-value=0.013 Score=58.80 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=34.3
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
.++.+++++|.+|+||||++..|+..|. .+.++-+++.|
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D 50 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLD 50 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 3678899999999999999999999999 88888888654
No 191
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.47 E-value=0.005 Score=67.98 Aligned_cols=42 Identities=40% Similarity=0.608 Sum_probs=36.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyR 391 (699)
.|.+|+++|.||+||||++..|+.++...|.++-+++.|-+|
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 467899999999999999999999998888888888776553
No 192
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.41 E-value=0.09 Score=55.25 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.+.-|+|+|.||+|||++|++|++.+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34578999999999999999999986
No 193
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.41 E-value=0.015 Score=60.79 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=31.9
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHh--hcCCCceEeehhhH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKY 390 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~--~~gi~tdv~~~gdy 390 (699)
.++.+|.++|.+||||||+++.|+..+. -......+++.|++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 4678999999999999999999999876 23334555555543
No 194
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.31 E-value=0.059 Score=52.09 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=26.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
.+-+++++|-||+||||+++.|+. ..+.++-.++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEEC
Confidence 345899999999999999999997 23444444543
No 195
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.30 E-value=0.062 Score=57.71 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=31.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
...++++.|-||+||||+|..|+..+...+.++-.++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 34589999999999999999999887766767777765
No 196
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.29 E-value=0.037 Score=56.84 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=22.2
Q ss_pred EEEEccCCCChhHHHHHHHHHHhh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
++++|.||+||||+|+.+++.+..
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999999753
No 197
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.092 Score=55.63 Aligned_cols=29 Identities=7% Similarity=-0.083 Sum_probs=25.7
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
..+-.++++|.||+|||++++.+++.|..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35667899999999999999999999963
No 198
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.27 E-value=0.064 Score=57.21 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.9
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+.-|+|+|.||+|||++|++|+..++
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Confidence 34588899999999999999999875
No 199
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.22 E-value=0.041 Score=58.59 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCChhHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
+-++++.|.||+||||||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 346789999999999999999976
No 200
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.21 E-value=0.069 Score=55.69 Aligned_cols=40 Identities=35% Similarity=0.360 Sum_probs=33.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gd 389 (699)
++.+|.++|.+|+||||+++.|+..+...+.++.+++.|-
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 4678888899999999999999999887777777776543
No 201
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.14 E-value=0.012 Score=61.51 Aligned_cols=42 Identities=31% Similarity=0.308 Sum_probs=34.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh-cCCCceEeehhhHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYR 391 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~-~gi~tdv~~~gdyR 391 (699)
++.+|+++|.+|+||||++..|+..+.. .|.++-+++.|.+|
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 4668999999999999999999999874 67777777766543
No 202
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.13 E-value=0.12 Score=54.19 Aligned_cols=34 Identities=29% Similarity=0.255 Sum_probs=26.6
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhc-CCCceEee
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFN 386 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~-gi~tdv~~ 386 (699)
.++++|.||+||||+++.+++.+... +.....++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 78899999999999999999988644 33333343
No 203
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.09 E-value=0.042 Score=56.01 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=27.3
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gd 389 (699)
+.-++++|.||+|||++|+.|++.++ .+...++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~---~~~~~i~~~~ 85 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN---APFIKVEATK 85 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT---CCEEEEEGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC---CCEEEEcchh
Confidence 44588999999999999999999874 3444455433
No 204
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.07 E-value=0.23 Score=54.52 Aligned_cols=109 Identities=12% Similarity=0.110 Sum_probs=62.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh-cCCCceEeehhh----HHHHh----hCCCCCCCCcCCCCHHHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGK----YRRLK----HGVNQSADFFRADNPEGMEARNEVAA 420 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~-~gi~tdv~~~gd----yRr~~----~g~~~~~~f~~~~~~~~~~~~~~vA~ 420 (699)
+.-+++++|-||+|||++|..++..... .+.++-.|+... +.++. .+.....-....-....+..+...+.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~ 278 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVAS 278 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999988764 366676666532 22111 12221110001112222222222221
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEEE
Q 005388 421 LAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLET 467 (699)
Q Consensus 421 ~~l~dl~~~L~~~G~vVIlDAtn~~~-e~R~~l~el-~~~~~~vifIE~ 467 (699)
.+. ...+.|.|....+. +.+..++.+ .++++.+++|..
T Consensus 279 --------~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 279 --------RLS-EAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp --------HHH-TSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred --------HHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 232 34577777655554 457777777 567888888876
No 205
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.03 E-value=0.13 Score=54.60 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.+.-|+|+|.||+|||++|++|++.++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 355689999999999999999998854
No 206
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.02 E-value=0.045 Score=57.28 Aligned_cols=26 Identities=19% Similarity=0.177 Sum_probs=22.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.+. ++++|.||+||||+++.|++.+.
T Consensus 36 ~~~-~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 36 LPH-LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CCC-EEEECSTTSSHHHHHHTHHHHHS
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHHc
Confidence 445 89999999999999999999763
No 207
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.00 E-value=0.047 Score=60.32 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=24.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.|.=|+|.|.||+|||++|++||..+++
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNA 241 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCC
Confidence 3556999999999999999999998764
No 208
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.99 E-value=0.016 Score=60.95 Aligned_cols=38 Identities=34% Similarity=0.455 Sum_probs=30.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
++.+|.++|.+||||||+++.|+..+...+.+..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~ 138 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG 138 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 56789999999999999999999998765555544433
No 209
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.97 E-value=0.28 Score=51.28 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=30.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
+.-+++++|-||+||||+|..++......+.++-.|+.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 45689999999999999999999877655555555553
No 210
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.95 E-value=0.019 Score=53.78 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=29.1
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
.-.++++|.+|+||||+++.|+..+...|.+...++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 3468889999999999999999988765655555543
No 211
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.91 E-value=0.048 Score=55.86 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=22.2
Q ss_pred EEEEccCCCChhHHHHHHHHHHhh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
++++|.||+||||+|+.+++.+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999998753
No 212
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.90 E-value=0.056 Score=56.08 Aligned_cols=28 Identities=25% Similarity=0.199 Sum_probs=24.0
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
..|-++++.|.||+|||++|+.|++.++
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 3456789999999999999999998864
No 213
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.84 E-value=0.055 Score=55.31 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.2
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+.-|+++|.||+||||+|+.|++.++
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998864
No 214
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.83 E-value=0.022 Score=57.26 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=25.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
++.+|.++|.+||||||+++.|+..++..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 46789999999999999999999988654
No 215
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.80 E-value=0.019 Score=60.24 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=30.6
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
.++.+|.|+|..||||||+.+.|+..+...+.+..+..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35789999999999999999999999876554544443
No 216
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.78 E-value=0.026 Score=60.26 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=34.3
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
.+..+|+++|.||+||||++..|+..+...|.++-+++.|
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 3567899999999999999999999988778887777654
No 217
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.77 E-value=0.029 Score=59.81 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=22.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+.-|+|+|.||+|||++|+.|++.++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34588999999999999999999864
No 218
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.65 E-value=0.054 Score=56.92 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=22.2
Q ss_pred EEEEccCCCChhHHHHHHHHHHhh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
++++|.||+||||+|+.|++.+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 889999999999999999999763
No 219
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.62 E-value=0.022 Score=61.41 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=30.9
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
.++.+|.|+|..||||||+.+.|+..+...+.+..+..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 36789999999999999999999999876555544443
No 220
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.60 E-value=0.11 Score=55.47 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=30.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
+.-++++.|-||+||||+|..++..+...+..+-.++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 34579999999999999999999877655656655554
No 221
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.59 E-value=0.054 Score=59.31 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=24.2
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
|.=|+|.|.||+|||.+|++||..++..
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 4458999999999999999999986643
No 222
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=94.57 E-value=0.11 Score=58.41 Aligned_cols=110 Identities=12% Similarity=0.087 Sum_probs=65.6
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
..+++|+|-|+-||||++..+.|.+.|.-.|+++..+..-.++... ..|+ .....
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~------~~yl-------------------~R~~~ 95 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELE------RPPQ-------------------WRFWR 95 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHT------SCTT-------------------HHHHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhcc------CChh-------------------hhHHH
Confidence 4689999999999999999999999998888777666332222211 1121 11112
Q ss_pred HHhcCCeEEEEeCCCCCH------------H-HHHHHHH---H----HcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 429 WMHEGGQVGIFDATNSSR------------K-RRNMLMK---M----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~------------e-~R~~l~e---l----~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
.+=..|.+||+|-..... + ....+.. + ...|+.++-+-..+ ++++.++|+..|..
T Consensus 96 ~lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~i-s~eeq~kRl~~R~~ 170 (500)
T 3czp_A 96 RLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHL-SKKQLKERLKALEK 170 (500)
T ss_dssp HCCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-CHHHHHHCC-----
T ss_pred hCCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEC-CHHHHHHHHHHHhc
Confidence 233569999999764322 2 1111221 1 45676664444444 48999999988754
No 223
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.55 E-value=0.03 Score=54.06 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=28.9
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
.+|+++|.+||||||+.+.|...+...+.++-++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i 40 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEE
Confidence 4789999999999999999999987777665555
No 224
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.54 E-value=0.19 Score=54.01 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=30.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
+.-++.+.|-||+|||||+..++..+...+.++-.++.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 45689999999999999999999888766655555544
No 225
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=94.48 E-value=0.088 Score=55.47 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=32.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
.+++|+|-|+-||||+|..+.|.++|.-.|+++..+
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~ 120 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVAL 120 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEEC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEe
Confidence 589999999999999999999999998888776555
No 226
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.45 E-value=0.11 Score=54.24 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=29.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc---CCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL---GHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~---gi~tdv~~~ 387 (699)
.+-.++++|.||+||||+++.+++.+... +.....++.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 45578999999999999999999988544 444444543
No 227
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.44 E-value=0.065 Score=59.26 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=24.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.|.=|+|.|.||+|||++|++||..++.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~ 241 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGA 241 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3556999999999999999999998764
No 228
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=94.44 E-value=0.11 Score=54.25 Aligned_cols=110 Identities=15% Similarity=0.217 Sum_probs=68.6
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
..++||+|-|+-|+||.++.+.|.+.|.-.|+++..|..-..+... ..| +.....
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~~------~~y-------------------lwR~~~ 127 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEKS------HDF-------------------LWRIEK 127 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHHT------SCT-------------------THHHHT
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhhc------CCH-------------------HHHHHH
Confidence 3689999999999999999999999998888777665321111100 111 111111
Q ss_pred HHhcCCeEEEEeCCCCCHH-------------HHHH---HHHH----HcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 429 WMHEGGQVGIFDATNSSRK-------------RRNM---LMKM----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e-------------~R~~---l~el----~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
.|=..|.++|+|-....+. .... +..+ ...|+.++=+-+.+ +.++-++|+..|..
T Consensus 128 ~lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhI-skeEQ~kR~~~R~~ 202 (289)
T 3rhf_A 128 QVPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNI-SKDEQKKRLIARLD 202 (289)
T ss_dssp TCCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEC-CHHHHHHHHHHHHH
T ss_pred hCCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEC-CHHHHHHHHHHHhc
Confidence 2335699999998755431 1122 2222 45677664444444 48888999988865
No 229
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.41 E-value=0.019 Score=53.56 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=23.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
+..++++|.||+||||+|+.+++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999999854
No 230
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.41 E-value=0.034 Score=57.03 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=28.8
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
..++++|-||+|||++|+.|++.+...+.....++.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~ 83 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 83 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence 479999999999999999999998655444445544
No 231
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.37 E-value=0.11 Score=55.64 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.2
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+.-|+|+|-||+|||++|++|++.++
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc
Confidence 45689999999999999999998854
No 232
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.34 E-value=0.27 Score=52.96 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=29.7
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
.-++++.|-||+||||+|..|+..+...+.++-.++.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4478889999999999999999887656666666654
No 233
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP: c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A* 2l3h_A 2l77_A 2l79_A
Probab=94.29 E-value=0.089 Score=55.42 Aligned_cols=65 Identities=23% Similarity=0.273 Sum_probs=47.7
Q ss_pred eEEecccccccccCC---cc------cCCCCCCHHHHHHHHHHHHHHHHHhccCC-------CCEEEEcChHHHHHHHhh
Q 005388 562 ILLTRHGESRDNVRG---RI------GGDTILSDAGEIYAKKLANFVEKRLKSER-------AASIWTSTLQRTILTASP 625 (699)
Q Consensus 562 I~LVRHGeS~~N~~~---~~------~GD~pLTe~G~~QA~~La~~L~~~l~~~~-------~~~V~sSpL~RA~QTA~~ 625 (699)
.+|.|||...-.... .+ .|...||+.|.+|...+|++|+++....- --.|+++...||++||+.
T Consensus 7 ~vl~RHG~R~P~~~~~~~~~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~rY~~ll~~~~~~~~v~vrst~~~Rt~~SA~~ 86 (354)
T 1nd6_A 7 TLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMT 86 (354)
T ss_dssp EEEEECCCBCCSCCCTTCSCCGGGSTTCTTCBCHHHHHHHHHHHHHHHHHTTTTTCSSCCGGGEEEEEESCHHHHHHHHH
T ss_pred EEEecCCCCCCccccCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhccccCcCeEEEEECCchHHHHHHHH
Confidence 567899987543210 00 12357999999999999999998854321 125889999999999998
Q ss_pred h
Q 005388 626 I 626 (699)
Q Consensus 626 i 626 (699)
+
T Consensus 87 f 87 (354)
T 1nd6_A 87 N 87 (354)
T ss_dssp H
T ss_pred H
Confidence 8
No 234
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.28 E-value=0.023 Score=57.05 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.3
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.-|+++|.||+||||+|+.|+..++
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3488999999999999999998864
No 235
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.074 Score=58.66 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=24.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.|.=|+|.|.||+|||++|++||..++.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456999999999999999999998764
No 236
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.21 E-value=0.034 Score=59.94 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
...|+++|.||+||||+++.|++.|++.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4468899999999999999999998854
No 237
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.11 E-value=0.078 Score=58.51 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
.|.=|+|.|.||+|||.+|++||..++..
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~ 243 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSAT 243 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCC
Confidence 34569999999999999999999987643
No 238
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.10 E-value=0.079 Score=58.59 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=22.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
-++|+|-||+||||+|+.|++.++
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 589999999999999999999864
No 239
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.93 E-value=0.047 Score=57.20 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=33.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh-hcCCCceEeehhhH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKY 390 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~-~~gi~tdv~~~gdy 390 (699)
+.-++|.|-||+|||++|++|+..+. ..+.++..++..++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 34688999999999999999999998 88888777776554
No 240
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.92 E-value=0.044 Score=53.10 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=27.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
..+++++|.||+||||++.+++..+...+.++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 35899999999999999988877766556555544
No 241
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.90 E-value=0.043 Score=55.66 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=24.6
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
..+.-++++|.||+|||++|++|++.++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566899999999999999999999854
No 242
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.89 E-value=0.086 Score=58.64 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=25.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
.|.=|+|.|.||+|||++|++||..++..
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCC
Confidence 45569999999999999999999997643
No 243
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.89 E-value=0.51 Score=51.99 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=31.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
+.-++++.|-||+||||+|..++......+.++-+|+.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 55689999999999999999999887665666666654
No 244
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.87 E-value=0.098 Score=57.94 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
+.-|+|+|.||+||||+|++|++.++.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 345899999999999999999998754
No 245
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.87 E-value=0.039 Score=58.12 Aligned_cols=29 Identities=31% Similarity=0.227 Sum_probs=26.1
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.++.+|.++|.+||||||+++.|+..+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 46789999999999999999999998863
No 246
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.81 E-value=0.064 Score=54.28 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=35.1
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
.+++-|++.|-||+||||+|-.++..+...|.++.+.+.|
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 3567899999999999999999999999889888777665
No 247
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.73 E-value=0.055 Score=52.48 Aligned_cols=37 Identities=22% Similarity=0.167 Sum_probs=28.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
+-+++++|.||+||||+++.|+..+...+.++..++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 4578899999999999999999777555555555543
No 248
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.73 E-value=0.034 Score=51.25 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=23.9
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCce
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~gi~td 383 (699)
|++.|-||+|||++|+.|+......+....
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v 56 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFV 56 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence 789999999999999999987544344433
No 249
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.71 E-value=0.31 Score=53.57 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=30.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh-cCCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~-~gi~tdv~~~ 387 (699)
+.-++++.|-||+||||++..|+..+.. .|.++-+|+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 4558999999999999999999988764 3666666654
No 250
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase, phytate binding site, hydrolase; HET: IHP; 1.88A {Enterobacter cloacae} PDB: 1nt4_A*
Probab=93.69 E-value=0.18 Score=55.05 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=48.5
Q ss_pred ceEEeccccccc-cc--------CC-----cccCCCCCCHHHHHHHHHHHHHHHHHhc--c-------C--CCCEEEEcC
Q 005388 561 PILLTRHGESRD-NV--------RG-----RIGGDTILSDAGEIYAKKLANFVEKRLK--S-------E--RAASIWTST 615 (699)
Q Consensus 561 ~I~LVRHGeS~~-N~--------~~-----~~~GD~pLTe~G~~QA~~La~~L~~~l~--~-------~--~~~~V~sSp 615 (699)
-++|.|||...- .. .. -..|...||+.|.+|...+|++++++.. + . ..-.|+++.
T Consensus 10 V~vl~RHG~R~P~~~~~~~~~~~~~~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~rY~~~~ll~~~~~~~~~~v~vrst~ 89 (398)
T 3ntl_A 10 VLIMSRANLRAPLANNGSVLEQSTPKQWPEWEVPGGQLTTKGGVLEVYMGHYMREWLAQQGMVKTGECPAADSVYAYANS 89 (398)
T ss_dssp EEEEEECCSBCCCGGGHHHHHHTCSSCCCCCSSCTTSBCHHHHHHHHHHHHHHHHHHHHTTSSCTTSCCCTTSEEEEECS
T ss_pred EEEEecCCCCCCCCCCcccccCCCCcccccCCCCccccchHHHHHHHHHHHHHHHHHhhcCCCccccCCCcCeEEEEECC
Confidence 467889997643 11 00 0123678999999999999999998862 1 1 223689999
Q ss_pred hHHHHHHHhhh
Q 005388 616 LQRTILTASPI 626 (699)
Q Consensus 616 L~RA~QTA~~i 626 (699)
..||++||+.+
T Consensus 90 ~~Rt~~SA~~f 100 (398)
T 3ntl_A 90 LQRTVATAQFF 100 (398)
T ss_dssp SHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 99999999998
No 251
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.64 E-value=0.032 Score=57.89 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.+..|+|+|.||+|||++|++|+..++
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 345689999999999999999998864
No 252
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.60 E-value=0.19 Score=52.30 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
-|+++|.||+|||++|+.|++.++
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998854
No 253
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.58 E-value=0.17 Score=53.11 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=22.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
..-+++++|-||+||||+|..|+...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 34589999999999999999999764
No 254
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.58 E-value=0.033 Score=54.22 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=22.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+.+++++|.+||||||+.+.|...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 34789999999999999999998764
No 255
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.57 E-value=0.043 Score=52.95 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=22.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.+.++|.+||||||+.+.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999886
No 256
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.48 E-value=0.05 Score=53.68 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.+++++++|.||||||++|..+...+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35789999999999999998876443
No 257
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=93.47 E-value=0.17 Score=56.87 Aligned_cols=110 Identities=14% Similarity=0.063 Sum_probs=69.6
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~~~f~~~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
..+++|+|-|.-||||++..+.|...|.-.|+++..+..-..+... ..|+ .....
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~~------~~yl-------------------~R~~~ 352 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEERA------QPYL-------------------WRFWR 352 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHHT------SCTT-------------------HHHHT
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhhc------chHH-------------------HHHHH
Confidence 4789999999999999999999999998888877666332222211 1121 11111
Q ss_pred HHhcCCeEEEEeCCCCCH------------H-HHHHHHH---H----HcCCceEEEEEEEeCCHHHHHHHHHHhhc
Q 005388 429 WMHEGGQVGIFDATNSSR------------K-RRNMLMK---M----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (699)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~------------e-~R~~l~e---l----~~~~~~vifIE~~c~d~e~i~rrI~~r~~ 484 (699)
.+=..|.++|+|-..... + ....+.. + ...|+.++-+-..+ ++++.++|+..|..
T Consensus 353 ~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~i-s~eeQ~~R~~~R~~ 427 (500)
T 3czp_A 353 HIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAI-DKQTQMERFKEREK 427 (500)
T ss_dssp TCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEC-CHHHHHHHHHHHHH
T ss_pred hCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEEC-CHHHHHHHHHHHhc
Confidence 133469999999876542 2 1112222 2 34566654444444 48999999988865
No 258
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A
Probab=93.36 E-value=0.12 Score=45.15 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=42.1
Q ss_pred eEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEE
Q 005388 30 QFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLL 95 (699)
Q Consensus 30 ~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~ 95 (699)
..-|+| +-+| ....+.|+|+=. +|+ +++|.+.. +.|++.+.+++ +..+|||+|
T Consensus 10 ~~~v~F-~wap---~a~~V~v~GdFn---~W~---~~~m~~~~-g~w~~~v~l~~--G~~~YKf~V 62 (96)
T 1z0n_A 10 ARPTVF-RWTG---GGKEVYLSGSFN---NWS---KLPMTRSQ-NNFVAILDLPE--GEHQYKFFV 62 (96)
T ss_dssp CEEEEE-EECS---CCSCEEEEEGGG---TTC---CEECEEET-TEEEEEEEECS--EEEEEEEEE
T ss_pred ceEEEE-EECC---CCcEEEEEEEeC---CCc---cccCEECC-CEEEEEEEccC--CCEEEEEEE
Confidence 356788 7777 367889999876 898 68999864 89999998765 346999998
No 259
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.29 E-value=0.038 Score=56.90 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.2
Q ss_pred EEEEccCCCChhHHHHHHHHHHh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~ 376 (699)
|+|+|.||+||||+++.|+..++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC
Confidence 89999999999999999998754
No 260
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.22 E-value=0.041 Score=55.16 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEccCCCChhHHHHHHHHHHh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~ 376 (699)
++++|.||+||||+++.|+..+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998754
No 261
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.17 E-value=0.05 Score=54.86 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=28.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
-|+++|-||+|||++|+.|++.+...+.....++..
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~ 66 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence 478899999999999999998876544455556543
No 262
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.16 E-value=0.029 Score=56.59 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=22.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHhh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
|+++|.||+|||++|++|++.++.
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 789999999999999999998754
No 263
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.14 E-value=0.035 Score=59.04 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=26.3
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
+.-|+|+|.||+|||++|++|++.++ .+...++.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~---~~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD---VPFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEech
Confidence 44588999999999999999999864 34444443
No 264
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.13 E-value=0.074 Score=52.28 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=29.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
.+-+++++|-||+||||++.+++..+...+.++..++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34589999999999999999998776555555555544
No 265
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.11 E-value=0.58 Score=44.55 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=32.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
+.+.++.+-.|+||||+|..|+..|...|.++-+++.|
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34555568899999999999999999999999999875
No 266
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.11 E-value=0.34 Score=51.39 Aligned_cols=25 Identities=20% Similarity=0.009 Sum_probs=22.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..-+++++|-||+||||+|..|+..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999976
No 267
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.11 E-value=0.084 Score=51.22 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=24.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
+...|+++|.+|+||||+..+|...+..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3468999999999999999999988653
No 268
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP; 2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A* 1dkm_A 1dkn_A 1dko_A 1dkl_A
Probab=93.10 E-value=0.16 Score=55.30 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=47.9
Q ss_pred ceEEecccccccccCCc------------c-cCCCCCCHHHHHHHHHHHHHHHHHhcc---C--------CCCEEEEcCh
Q 005388 561 PILLTRHGESRDNVRGR------------I-GGDTILSDAGEIYAKKLANFVEKRLKS---E--------RAASIWTSTL 616 (699)
Q Consensus 561 ~I~LVRHGeS~~N~~~~------------~-~GD~pLTe~G~~QA~~La~~L~~~l~~---~--------~~~~V~sSpL 616 (699)
-.+|.|||...-..... + .+...||..|.+|...+|++++++... . .--.|+++..
T Consensus 11 v~vl~RHG~R~P~~~~~~~~~~~~~~w~~w~~~~g~LT~~G~~~~~~lG~~lr~ry~~~~ll~~~~~p~~~~v~v~st~~ 90 (410)
T 1dkq_A 11 VVIVSRAGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVD 90 (410)
T ss_dssp EEEEEECCSBCCSCCCHHHHHTCSSCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCCTTTEEEEECSS
T ss_pred EEEEecCCcCCCCCCCccccccCcccccCCCCCCCccchHHHHHHHHHHHHHHHHHHhcCCCccccCCCcceEEEEeCCc
Confidence 45678999774432110 0 124579999999999999999988621 1 1224899999
Q ss_pred HHHHHHHhhh
Q 005388 617 QRTILTASPI 626 (699)
Q Consensus 617 ~RA~QTA~~i 626 (699)
.||++||+.+
T Consensus 91 ~RT~~SA~~~ 100 (410)
T 1dkq_A 91 ERTRKTGEAF 100 (410)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 269
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.10 E-value=0.021 Score=51.97 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.3
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~ 374 (699)
-|+++|.+|+||||+..+|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999998753
No 270
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.10 E-value=0.27 Score=53.56 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..-++.++|-||+|||||+..|+-.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4558999999999999999988743
No 271
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.07 E-value=0.5 Score=52.51 Aligned_cols=38 Identities=5% Similarity=-0.158 Sum_probs=31.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc-CCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~-gi~tdv~~~ 387 (699)
..-++++.|-||+||||+|..++..+... +.++-.|+.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 45689999999999999999999887654 667766665
No 272
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.06 E-value=0.09 Score=52.89 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=32.4
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
.+..+++++|-||+||||++..++.++...+.++-++.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 35679999999999999999999998887788887774
No 273
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.94 E-value=0.1 Score=55.60 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=30.6
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
....+|.++|.||+|||||-.+|...+...+.+.-++.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 34678999999999999999999988765555555553
No 274
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.94 E-value=0.052 Score=57.25 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.6
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
-.++++|.||+||||+++.|+..++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4588999999999999999999874
No 275
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella tularensis subsp} PDB: 4e3w_A 2glc_A 2glb_A 2gla_A 3it0_A* 3it1_A* 3it2_A 2p36_A*
Probab=92.85 E-value=0.23 Score=52.74 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=48.3
Q ss_pred ceEEecccccccccC--C----cccCCCCCCHHHHHHHHHHHHHHHHHh---ccC-------CCCEEEEcChHHHHHHHh
Q 005388 561 PILLTRHGESRDNVR--G----RIGGDTILSDAGEIYAKKLANFVEKRL---KSE-------RAASIWTSTLQRTILTAS 624 (699)
Q Consensus 561 ~I~LVRHGeS~~N~~--~----~~~GD~pLTe~G~~QA~~La~~L~~~l---~~~-------~~~~V~sSpL~RA~QTA~ 624 (699)
-+.+.|||...-... . -..|...||+.|.+|...+|++++++. .+. .--.+++++..||++||+
T Consensus 11 v~v~~RHG~R~p~~~~p~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~~Yv~~~~~l~~~~~~~~v~~rst~~~Rt~~Sa~ 90 (342)
T 3it3_A 11 VSMITRHGDRAPFANIENANYSWGTELSELTPIGMNQEYNLGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQ 90 (342)
T ss_dssp EEEEEECCCBCCSSCCTTCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHTTTSCSSCSSCCTTSEEEEECSSHHHHHHHH
T ss_pred EEEEEeCCCCCCcccCCCCcccCCCChHhhhHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEECCChHHHHHHH
Confidence 467889998643211 0 012245799999999999999999886 221 122578999999999999
Q ss_pred hh
Q 005388 625 PI 626 (699)
Q Consensus 625 ~i 626 (699)
.+
T Consensus 91 ~~ 92 (342)
T 3it3_A 91 SL 92 (342)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 276
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.72 E-value=0.18 Score=56.32 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=25.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
-|+|+|.||+|||++|++|+..++ .....++.
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~---~~f~~is~ 82 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEAN---VPFFHISG 82 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT---CCEEEEEG
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC---CCeeeCCH
Confidence 388999999999999999998864 33334444
No 277
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.72 E-value=0.042 Score=54.75 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.+..|+++|.+|+||||+|..|++++.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 356799999999999999999998754
No 278
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.68 E-value=0.049 Score=54.50 Aligned_cols=26 Identities=15% Similarity=0.461 Sum_probs=23.3
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+-.|++.|.||+||||+|.+|++.+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999999874
No 279
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=92.64 E-value=0.057 Score=54.97 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.5
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
++|.++|.+||||||+|+.|+++++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g 26 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYS 26 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998744
No 280
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.62 E-value=0.06 Score=56.64 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=23.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+..++++|.||+|||++|+.+++.+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35789999999999999999999986
No 281
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.60 E-value=0.1 Score=55.29 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=31.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
+..+|.++|.||+||||+...|+..+...+.++.+++.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 56788899999999999999999988777777666654
No 282
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.53 E-value=0.82 Score=48.33 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=23.9
Q ss_pred ccEEEEE--EccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVL--VGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvm--vGLPGSGKSTlAr~La~~L~~ 377 (699)
.+-++++ +|.||+||||+++.+++.+..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 3457777 999999999999999988754
No 283
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.50 E-value=0.058 Score=55.01 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEccCCCChhHHHHHHHHHHh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~ 376 (699)
|+++|.||+||||+++.|+..+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 88999999999999999998764
No 284
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.49 E-value=0.061 Score=51.74 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=26.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCce
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~td 383 (699)
+|.++|.+|||||||++.|.+.+...+.+.-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G 34 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVA 34 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceE
Confidence 6899999999999999999999876654443
No 285
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.44 E-value=0.15 Score=53.70 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=35.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gd 389 (699)
+.++++.|-.|.||||+|..|+..|...|.++-+++.|-
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 688999999999999999999999998899998888763
No 286
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.40 E-value=0.14 Score=54.83 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=66.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhHHHHhhCCCCC-CCCcC-CCCHHHHHHHHHHHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-ADFFR-ADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdyRr~~~g~~~~-~~f~~-~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
+.+|+++|-+||||||+.+.|...+.... ....+ ++.+......... ..+.. ...... ..... ...+.+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~-g~I~i--e~~~e~~~~~~~~~v~~v~~q~~~~~--~~~~~--t~~~~i~~ 247 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQ-RLITI--EDVPELFLPDHPNHVHLFYPSEAKEE--ENAPV--TAATLLRS 247 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTS-CEEEE--ESSSCCCCTTCSSEEEEECC------------C--CHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCc-eEEEE--CCccccCccccCCEEEEeecCccccc--ccccc--CHHHHHHH
Confidence 45799999999999999999998754321 11122 1111111000000 01111 100000 00000 01111112
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhccCCCCCCCCChHHH
Q 005388 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAG 498 (699)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r~~~spD~s~~~d~e~a 498 (699)
.+.......|++..... +..+.+..+ ..+....+.++..++......|+...........+. +.+..
T Consensus 248 ~l~~~pd~~l~~e~r~~-~~~~~l~~l-~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~~~~~~~-~~~~i 314 (361)
T 2gza_A 248 CLRMKPTRILLAELRGG-EAYDFINVA-ASGHGGSITSCHAGSCELTFERLALMVLQNRQGRQL-PYEII 314 (361)
T ss_dssp HTTSCCSEEEESCCCST-HHHHHHHHH-HTTCCSCEEEEECSSHHHHHHHHHHHHTTSTTGGGS-CHHHH
T ss_pred HHhcCCCEEEEcCchHH-HHHHHHHHH-hcCCCeEEEEECCCCHHHHHHHHHHHHhccccccCC-CHHHH
Confidence 23334556777776543 333444444 334555577788888899999997765533322344 45554
No 287
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.40 E-value=0.064 Score=59.14 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=23.7
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
+.-|+|.|.||+|||++|++|++.++.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 345889999999999999999999763
No 288
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.26 E-value=0.26 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=20.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
...-|+++|.+|+|||||..+|..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356699999999999999999874
No 289
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.26 E-value=0.11 Score=51.12 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=26.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh-hcCCCceEee
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFN 386 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~-~~gi~tdv~~ 386 (699)
+.-++.++|.+||||||+++.|+.... ..+....+++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 345899999999999999999985332 2333444443
No 290
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.17 E-value=0.12 Score=52.96 Aligned_cols=38 Identities=11% Similarity=-0.031 Sum_probs=29.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc-CCCceEeeh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNV 387 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~-gi~tdv~~~ 387 (699)
..-+++++|-||+||||+++.|+..+... |.++.+++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34589999999999999999999887644 545545543
No 291
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.16 E-value=0.16 Score=49.78 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=32.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
+..+++++|-+||||||.+-.++.++...+.++-++.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4579999999999999999999998877788888774
No 292
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.13 E-value=0.14 Score=54.50 Aligned_cols=41 Identities=22% Similarity=0.127 Sum_probs=36.8
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gd 389 (699)
..+.++++.|-+|.||||+|..|+..|...|.++-+++.|-
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45778999999999999999999999998899999998764
No 293
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.07 E-value=0.073 Score=51.85 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=23.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
++-++.++|.+||||||+.+.|+..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 355899999999999999999998764
No 294
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.07 E-value=0.061 Score=53.23 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
+.++.++|.+|||||||.+.|+..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999999865
No 295
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.04 E-value=0.11 Score=61.64 Aligned_cols=36 Identities=25% Similarity=0.182 Sum_probs=28.0
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
..|.=|+|.|.||+|||++|++|+..++ .....++.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg---~~~~~v~~ 271 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETG---AFFFLING 271 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTT---CEEEEEEH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC---CeEEEEEh
Confidence 3566799999999999999999998754 34444544
No 296
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.99 E-value=0.063 Score=53.34 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.4
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
.++.+|.+.|..||||||+++.|+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999999999875
No 297
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.98 E-value=0.078 Score=58.78 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=22.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
-++|+|.||+|||++|+.|++.+..
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHh
Confidence 3689999999999999999999854
No 298
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.96 E-value=0.092 Score=51.02 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=22.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
..-++.++|.+||||||+++.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999753
No 299
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.84 E-value=0.091 Score=54.67 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=21.8
Q ss_pred EEEEccCCCChhHHHHHHHHHHh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~ 376 (699)
++++|.||+||||+|+.|++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999976
No 300
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.83 E-value=0.3 Score=48.92 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
.+.-|+++|.||+|||||..+|..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 457799999999999999988874
No 301
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.78 E-value=0.087 Score=58.07 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.0
Q ss_pred cEEEEEEccCCCChhHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
...|+++|.||+|||||..+|..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 34799999999999999998864
No 302
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.59 E-value=0.1 Score=56.59 Aligned_cols=27 Identities=26% Similarity=0.177 Sum_probs=23.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.+.+|+++|.||+||||+++.|+..++
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 455899999999999999999998764
No 303
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.55 E-value=0.13 Score=53.30 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=25.1
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
.++-.|++.|.||+|||++|.+|+..+...
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l~ 131 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY 131 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 445679999999999999999999875433
No 304
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.52 E-value=0.094 Score=51.48 Aligned_cols=25 Identities=20% Similarity=0.065 Sum_probs=22.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
+.-++.++|.||+||||+++.|+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999974
No 305
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.48 E-value=0.37 Score=56.32 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=27.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
-++|+|.||+|||++|+.|++.++ .....++..+|
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~---~~~~~i~~s~~ 524 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALG---IELLRFDMSEY 524 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT---CEEEEEEGGGC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc---CCEEEEechhh
Confidence 689999999999999999999974 44445655444
No 306
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.43 E-value=0.14 Score=49.84 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+...|+++|.+|+||||+..+|...+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 356788889999999999999998754
No 307
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella pneumoniae} PDB: 2wni_A 2wu0_A
Probab=91.39 E-value=0.28 Score=53.49 Aligned_cols=66 Identities=21% Similarity=0.165 Sum_probs=47.4
Q ss_pred ceEEecccccccccC--------------CcccCCCCCCHHHHHHHHHHHHHHHHHhc--cC------C--CCEEEEcCh
Q 005388 561 PILLTRHGESRDNVR--------------GRIGGDTILSDAGEIYAKKLANFVEKRLK--SE------R--AASIWTSTL 616 (699)
Q Consensus 561 ~I~LVRHGeS~~N~~--------------~~~~GD~pLTe~G~~QA~~La~~L~~~l~--~~------~--~~~V~sSpL 616 (699)
-.+|.|||...-... .--.+...||+.|.+|...+|++|+++.. +. . --.|+++..
T Consensus 19 v~~~~RHG~R~P~~~~~~~l~~~~~~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~rY~~~~ll~~~~~~~~~v~~rst~~ 98 (418)
T 2wnh_A 19 VVELSRHGIRPPTAGNREAIEAATGRPWTEWTTHDGELTGHGYAAVVNKGREEGQHYRQLGLLQAGCPTAESIYVRASPL 98 (418)
T ss_dssp EEEEEECCCCCCCHHHHHHHHHHHTSCCCCCSSCTTSCCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCTTTEEEEECSS
T ss_pred EEEEEeCCCCCCCCCcchhHHhcCccccccCCCCcCccChhHHHHHHHHHHHHHHHHHhcCCcccCCCCCCeEEEEECCC
Confidence 356789998744320 00012457999999999999999988754 21 1 124889999
Q ss_pred HHHHHHHhhh
Q 005388 617 QRTILTASPI 626 (699)
Q Consensus 617 ~RA~QTA~~i 626 (699)
.||++||+.+
T Consensus 99 ~Rt~~Sa~~f 108 (418)
T 2wnh_A 99 QRTRATAQAL 108 (418)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999988
No 308
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=91.37 E-value=0.17 Score=53.46 Aligned_cols=40 Identities=18% Similarity=0.074 Sum_probs=35.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gd 389 (699)
.+.++++.|-+|.||||+|..|+..|...|.++-+++.|-
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~ 57 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDP 57 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3567889999999999999999999999999999988763
No 309
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.29 E-value=0.43 Score=53.30 Aligned_cols=37 Identities=27% Similarity=0.238 Sum_probs=27.4
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
+.-|+|+|.||+|||++|++|+..+ +.....++..++
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l 274 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 274 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHh
Confidence 4458899999999999999999885 334444554333
No 310
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.22 E-value=0.089 Score=54.23 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.4
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
..|+++|.||+|||++|+.+++.++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999999865
No 311
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.16 E-value=0.19 Score=53.25 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=29.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
+..+|.++|.||+||||+.+.|...+...+.+..++.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 5678999999999999999999988765555555543
No 312
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.15 E-value=0.11 Score=50.56 Aligned_cols=28 Identities=32% Similarity=0.390 Sum_probs=23.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCC
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi 380 (699)
+|.++|.+|+||||+.+.|+..+...|+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~Gi 30 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSGV 30 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCCE
Confidence 5889999999999999999998863343
No 313
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.06 E-value=0.065 Score=55.82 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=21.6
Q ss_pred EEEEccCCCChhHHHHHHHHHHh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~ 376 (699)
|+|+|-||+|||++|+.|++.+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 89999999999999999999865
No 314
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.06 E-value=0.17 Score=47.31 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
++.-|+++|.+|+|||||.++|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999975
No 315
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.99 E-value=0.072 Score=55.49 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHHh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
-++|.|.||+|||++|+.|++.++
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 388999999999999999999865
No 316
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.93 E-value=0.2 Score=51.65 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=33.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
+..+|.++|-.|+||||+|..|+..|...|.++-+++.|
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 344555569999999999999999999999999998875
No 317
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=90.90 E-value=0.21 Score=52.09 Aligned_cols=72 Identities=13% Similarity=0.248 Sum_probs=56.3
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccC-CCceEEEEecCCCCCceeeEEEEecCCCCCcee
Q 005388 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRES-ASMWELSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (699)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~-~~~W~~~l~~~~~~~~leyKf~~~~~~~~~~~~ 105 (699)
....-.|+|+..+| ....+.|+|+=. +|+ +.++|+... .+.|++++.+++ +..+|||++=. .
T Consensus 166 ~~~k~~v~f~~~~~---~~~~V~v~GsF~---~W~--~~~~l~k~~~~g~~~~~~~L~~--G~y~YkFiVDG-------~ 228 (294)
T 3nme_A 166 GLKRKTVTLTLKDK---GFSRVEISGLDI---GWG--QRIPLTLGKGTGFWILKRELPE--GQFEYKYIIDG-------E 228 (294)
T ss_dssp CCCCEEEEEEEECS---SCSCEEEEETTT---EEE--EEEECEECTTTCEEEEEEEECS--EEEEEEEEETT-------E
T ss_pred ccccccceeeeccC---CCCEEEEEEecc---CCC--CcccceEcCCCCEEEEEEECCC--ceEEEEEEECC-------E
Confidence 34556899999999 567799999776 798 789999964 899999999886 57899999743 3
Q ss_pred eccCCCcccc
Q 005388 106 VEEGPNRLLT 115 (699)
Q Consensus 106 wE~g~NR~l~ 115 (699)
|-..++-...
T Consensus 229 w~~d~~~~~~ 238 (294)
T 3nme_A 229 WTHNEAEPFI 238 (294)
T ss_dssp EECCTTSCEE
T ss_pred EeeCCCCCee
Confidence 7777765533
No 318
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.85 E-value=0.14 Score=53.76 Aligned_cols=27 Identities=33% Similarity=0.331 Sum_probs=24.1
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
+-.++++|.||+||||+|+.+++.+..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 347899999999999999999999864
No 319
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.82 E-value=0.18 Score=51.66 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=25.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
+.-+++++|.+||||||+.+.|...+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 45689999999999999999999987643
No 320
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.80 E-value=0.2 Score=53.22 Aligned_cols=39 Identities=21% Similarity=0.102 Sum_probs=35.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
.+.++++.|-.|.||||+|..|+..|...|.++-+++.|
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 356788999999999999999999999889999898876
No 321
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.74 E-value=0.43 Score=52.11 Aligned_cols=40 Identities=3% Similarity=0.028 Sum_probs=26.1
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCH
Q 005388 433 GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDR 472 (699)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~el-~~~~~~vifIE~~c~d~ 472 (699)
.+-+.|+|+++........+.++ .+.+.+++++--.|+..
T Consensus 84 d~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCc
Confidence 36777899998644433445444 56677887777777754
No 322
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.70 E-value=0.11 Score=58.11 Aligned_cols=26 Identities=35% Similarity=0.363 Sum_probs=23.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+..++++|.||+||||+|+.|++.++
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999999975
No 323
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.66 E-value=0.074 Score=48.88 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=20.2
Q ss_pred EEEEccCCCChhHHHHHHHHHHh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~ 376 (699)
|++.|-||+|||++|+.|+....
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTTS
T ss_pred EEEECCCCccHHHHHHHHHHhCC
Confidence 78899999999999999987643
No 324
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.65 E-value=0.21 Score=58.59 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=32.8
Q ss_pred ccE-EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 350 RHL-AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 350 ~~~-lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
+|. -++|+|.||+|||++|++|++.+...+.....++..+|
T Consensus 519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~ 560 (758)
T 3pxi_A 519 RPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY 560 (758)
T ss_dssp SCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhc
Confidence 443 69999999999999999999998655566666776555
No 325
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.59 E-value=0.14 Score=57.99 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.+..++|+|.||+||||+|+.|+..++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4557999999999999999999999853
No 326
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.58 E-value=0.15 Score=53.78 Aligned_cols=26 Identities=23% Similarity=0.580 Sum_probs=23.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
++-++.++|.+|||||||.+.|...+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34579999999999999999999886
No 327
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.42 E-value=0.11 Score=57.07 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
+.-|+|+|.||+|||++|++|+..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4568899999999999999999986
No 328
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.39 E-value=0.18 Score=47.75 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=23.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
..-++.++|..|+||||+.+.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999999886
No 329
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.38 E-value=0.38 Score=51.56 Aligned_cols=114 Identities=11% Similarity=0.092 Sum_probs=57.7
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhc-CCCceEeehhhHHHHhhCCCCCCCCcC--CCCHHHHHHHHHHHHHHHHHHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKYRRLKHGVNQSADFFR--ADNPEGMEARNEVAALAMEDMIS 428 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~-gi~tdv~~~gdyRr~~~g~~~~~~f~~--~~~~~~~~~~~~vA~~~l~dl~~ 428 (699)
-+|+++|.+||||||+.+.|...+... +.. ++..++-.. ........+.. ............++ .
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~--i~t~ed~~e--~~~~~~~~~v~q~~~~~~~~~~~~~La--------~ 191 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHH--ILTIEDPIE--FVHESKKCLVNQREVHRDTLGFSEALR--------S 191 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCE--EEEEESSCC--SCCCCSSSEEEEEEBTTTBSCHHHHHH--------H
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcE--EEEccCcHH--hhhhccccceeeeeeccccCCHHHHHH--------H
Confidence 489999999999999999999988754 222 222221111 00000000100 00000000111222 2
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHH
Q 005388 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNI 479 (699)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI 479 (699)
.|...-.++|+|=.. ..+..+.+.++...|.. +++-.+..+....-.|+
T Consensus 192 aL~~~PdvillDEp~-d~e~~~~~~~~~~~G~~-vl~t~H~~~~~~~~dRl 240 (356)
T 3jvv_A 192 ALREDPDIILVGEMR-DLETIRLALTAAETGHL-VFGTLHTTSAAKTIDRV 240 (356)
T ss_dssp HTTSCCSEEEESCCC-SHHHHHHHHHHHHTTCE-EEEEESCSSHHHHHHHH
T ss_pred HhhhCcCEEecCCCC-CHHHHHHHHHHHhcCCE-EEEEEccChHHHHHHHH
Confidence 244567899999877 45555555666555654 45545555443333343
No 330
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.32 E-value=0.15 Score=50.17 Aligned_cols=35 Identities=20% Similarity=0.124 Sum_probs=31.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
|.+.|-.|+||||+|..|+..|...|.++-+++.|
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D 37 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGD 37 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEEC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34489999999999999999999999998888775
No 331
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=90.08 E-value=0.16 Score=51.70 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=21.7
Q ss_pred EEEEccCCCChhHHHHHHHHHHh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~ 376 (699)
++++|.||+|||++|+.+++.+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhc
Confidence 89999999999999999999874
No 332
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.04 E-value=0.26 Score=48.28 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=26.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh-hcCCCceEe
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHF 385 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~-~~gi~tdv~ 385 (699)
..-+++++|-||+|||++|..++.... ..+..+-.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~ 65 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee
Confidence 356899999999999999999876532 234444444
No 333
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.02 E-value=0.21 Score=45.84 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=22.0
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
...+-|+++|.+|+|||||..+|...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34567999999999999999998753
No 334
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.96 E-value=0.22 Score=46.27 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.7
Q ss_pred CccEEEEEEccCCCChhHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
...+=|+++|.+|+|||||..+|..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 3567799999999999999998875
No 335
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.96 E-value=0.18 Score=48.57 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.2
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
....-|+++|.+|+|||||..+|...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999864
No 336
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.93 E-value=0.31 Score=47.96 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=33.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc-CCCceEeehh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVG 388 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~-gi~tdv~~~g 388 (699)
.+.+.+..+-.|+||||+|..|+..|... |.++-+++.|
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 43 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDIS 43 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECC
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECC
Confidence 35566677889999999999999999988 9999999875
No 337
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=89.91 E-value=0.27 Score=48.20 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=32.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
+.+.+..+-.|+||||+|..|+..|...|.++-+++.|
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D 40 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD 40 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 45566678899999999999999999889898888775
No 338
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=89.71 E-value=0.22 Score=50.07 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=33.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gd 389 (699)
.+.+.++.+-.|+||||+|..|+..|. .|.++-+++.|-
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~ 65 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDT 65 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECT
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCC
Confidence 455666679999999999999999999 899998888753
No 339
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.68 E-value=0.15 Score=49.72 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~ 374 (699)
+|+++|-+|||||++|.+|+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3788999999999999999865
No 340
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.68 E-value=0.19 Score=52.34 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=27.1
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~ 387 (699)
.-|+++|-||+|||++|+.|+......+.....++.
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~ 61 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNC 61 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEEC
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeC
Confidence 347899999999999999999876544444444543
No 341
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=89.61 E-value=0.25 Score=49.81 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=34.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gd 389 (699)
.+.+.++.|-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 57 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADF 57 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4566677789999999999999999998898988887653
No 342
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.60 E-value=0.2 Score=51.00 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+.-+++++|-||+||||++..|+..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345899999999999999999997654
No 343
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.52 E-value=0.21 Score=46.74 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
.+.-|+++|.||+|||||.++|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999753
No 344
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=89.48 E-value=0.53 Score=48.22 Aligned_cols=39 Identities=21% Similarity=0.155 Sum_probs=31.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
.+.+.+...-+|.||||+|..|+..|...|.++-+++.|
T Consensus 82 ~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp CCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 344444446799999999999999999889999888875
No 345
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.44 E-value=0.17 Score=49.39 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..-|+|+|.||+||||+|..|.++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 457999999999999999999975
No 346
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=89.44 E-value=0.29 Score=52.27 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=35.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh--hcCCCceEeehhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGK 389 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~--~~gi~tdv~~~gd 389 (699)
.+.++++.|-.|.||||+|..|+..|. ..|.++-+++.|-
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 457888999999999999999999999 8899999988763
No 347
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.42 E-value=0.31 Score=49.70 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=31.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
+|.+.|-.|+||||+|..|+..|...|.++-++|.|
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D 39 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD 39 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 344479999999999999999999889999888875
No 348
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.37 E-value=0.29 Score=44.67 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
+++-|+++|.+|+|||||..+|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 457799999999999999998864
No 349
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.33 E-value=0.23 Score=45.90 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
...|+++|.||+|||||.++|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999974
No 350
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=89.29 E-value=0.25 Score=55.50 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.4
Q ss_pred EEEEccCCCChhHHHHHHHHHHh
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~ 376 (699)
|+|+|.||+||||+|++|+..+.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998764
No 351
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.27 E-value=0.33 Score=48.68 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=31.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
+|.+.|-.|+||||+|..|+..|...|.++-++|.|
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D 38 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCC
Confidence 344479999999999999999999889999888775
No 352
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=89.26 E-value=0.57 Score=48.49 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=34.9
Q ss_pred CCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhh
Q 005388 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (699)
Q Consensus 348 ~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gd 389 (699)
...+.+.+..+-+|.||||+|..|+..|...|.++-+++.|-
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 131 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDM 131 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccC
Confidence 345666677788999999999999999998899998887753
No 353
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.21 E-value=0.26 Score=44.78 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..+=|+++|.+|+|||||..+|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999998753
No 354
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.21 E-value=0.25 Score=44.39 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
++-|+++|.+|+||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 355899999999999999998754
No 355
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.08 E-value=0.95 Score=57.70 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=32.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
++-+|++.|-||+||||||..++..+...+.++-.|+..
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~E 769 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 769 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEecc
Confidence 456899999999999999999998887666677666653
No 356
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.08 E-value=0.33 Score=48.16 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=33.3
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gd 389 (699)
+.+.+..+-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 456666788999999999999999998899998887763
No 357
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.04 E-value=0.37 Score=47.09 Aligned_cols=36 Identities=31% Similarity=0.275 Sum_probs=30.9
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
.+.++.+-.|+||||+|..|+..|...| ++-+++.|
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D 37 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGD 37 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEEC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECC
Confidence 3555678899999999999999999889 88888765
No 358
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.02 E-value=0.27 Score=52.91 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=25.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
.+-+|+++|.+||||||+.+.|...+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 45689999999999999999999987654
No 359
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.00 E-value=0.52 Score=47.14 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=32.9
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
.+..+++++|-+||||||.+-.++.+....+.++.++.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34679999999999999999999988887888888774
No 360
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=88.96 E-value=0.39 Score=48.02 Aligned_cols=39 Identities=31% Similarity=0.297 Sum_probs=33.3
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gd 389 (699)
+.+.++.+-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 456677789999999999999999998898888887653
No 361
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.94 E-value=0.87 Score=53.94 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
.+.-|+|+|.||+||||+|+.|+..++
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 455699999999999999999998754
No 362
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.88 E-value=0.3 Score=45.41 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.1
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
...+-|+++|.+|+|||||..+|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35677999999999999999988843
No 363
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.88 E-value=1.8 Score=55.96 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=37.2
Q ss_pred HhhhcC-CCCCccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 340 ADQMLG-PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 340 ~~~~~~-~~~~~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
.|.+.+ -.-.++..|+++|.||+||||||.+++......|.++..++..
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 344444 2223567899999999999999999998877778788777654
No 364
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=88.85 E-value=1.9 Score=44.81 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
.+-.|.++|.||+|||||..+|..
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 466899999999999999988863
No 365
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.83 E-value=0.28 Score=44.22 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.2
Q ss_pred cEEEEEEccCCCChhHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
++-|+++|.||+|||||..+|..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 46699999999999999988874
No 366
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.81 E-value=0.29 Score=46.56 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..+.|+++|.+|+|||||.+.|...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 4578999999999999999999864
No 367
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.77 E-value=0.29 Score=45.12 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
++.-|+++|.+|+|||||..+|..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999998864
No 368
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=88.69 E-value=0.57 Score=54.45 Aligned_cols=60 Identities=10% Similarity=0.070 Sum_probs=52.7
Q ss_pred CCceEEEEEEEEecccCCCcEEEEecCCCccCCCCccccccccccCCCceEEEEecCCCCCceeeEEEE
Q 005388 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLL 95 (699)
Q Consensus 27 ~~~~~~v~lkv~aP~l~~~~~l~l~Gs~~~LG~W~~~kal~M~~~~~~~W~~~l~~~~~~~~leyKf~~ 95 (699)
..+..-|+|.+..|. ....+.|+|+-. +|++. +.+|... .+.|++.+++|+- .-+|||+|
T Consensus 14 ~~~~~~v~f~~~~~~--~~~~v~~~G~Fn---~w~~~-~~~~~~~-~~~~~~~~~L~~g--~~~y~f~v 73 (696)
T 4aee_A 14 RKGRYIVKFTRHWPQ--YAKNIYLIGEFT---SLYPG-FVKLRKI-EEQGIVYLKLWPG--EYGYGFQI 73 (696)
T ss_dssp EEEEEEEEEEEECCT--TCSCEEEEETTS---CSSTT-SCBCEEE-TTEEEEEEEECSE--EEEEEEEE
T ss_pred CCCcEEEEEEEECCC--CCcEEEEEEecC---CCCCC-CcceEec-CCeEEEEEEcCCc--eEEEEEEE
Confidence 457788999999988 567899999999 99985 6899988 8999999999885 68999998
No 369
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=88.68 E-value=0.35 Score=51.71 Aligned_cols=39 Identities=18% Similarity=0.051 Sum_probs=34.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHh--hcCCCceEeehh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVG 388 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~--~~gi~tdv~~~g 388 (699)
.+.++++.|-.|.||||+|..|+..+. ..|.++-+++.|
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 346888999999999999999999999 889999999876
No 370
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.55 E-value=0.29 Score=45.93 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..+=|+++|.+|+|||||.++|...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999998753
No 371
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=88.47 E-value=0.34 Score=54.95 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=34.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
.+.+++++|-+|.||||+|..|+..+...|.++-+++.|
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 345788999999999999999999999889999888876
No 372
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.44 E-value=0.31 Score=44.89 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..+-|+++|.+|+|||||..+|...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999888753
No 373
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.38 E-value=0.3 Score=45.80 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
+++-|+++|.+|+|||||...|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 5678999999999999999999853
No 374
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.35 E-value=0.3 Score=44.41 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=20.3
Q ss_pred cEEEEEEccCCCChhHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
.+-|+++|.+|+|||||..+|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 45699999999999999998874
No 375
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.34 E-value=0.29 Score=46.03 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.1
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..+.-|+++|.+|+||||+..+|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35567999999999999999998753
No 376
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.19 E-value=0.32 Score=45.75 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
+.+-|+++|.+|+|||||..+|..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 567799999999999999988864
No 377
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.16 E-value=0.33 Score=44.49 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=20.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
.++-|+++|.||+|||||..+|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 356699999999999999998864
No 378
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=88.14 E-value=0.55 Score=48.83 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=30.9
Q ss_pred EEEEEE-ccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 352 LAIVLV-GLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 352 ~lIvmv-GLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
.+|+++ .-+|.||||+|..|+..|...|.++-+++.|
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D 142 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 142 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECC
Confidence 455555 4699999999999999999889999888765
No 379
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=88.11 E-value=1.2 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.5
Q ss_pred EEEEEEccCCCChhHHHHHHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~ 373 (699)
..|+++|.||+|||||..+|..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4599999999999999998874
No 380
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=88.08 E-value=0.31 Score=51.18 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=24.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.+-.++++|.||+|||++|+.+++.|.-
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 4557999999999999999999999864
No 381
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.07 E-value=0.4 Score=52.75 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=25.6
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCC
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi 380 (699)
.+++.|.||+||||++..++++|...+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999987665
No 382
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.05 E-value=0.34 Score=43.71 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.2
Q ss_pred cEEEEEEccCCCChhHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
++=|+++|.+|+|||||..+|..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 45699999999999999988874
No 383
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=88.05 E-value=0.17 Score=53.94 Aligned_cols=29 Identities=21% Similarity=0.085 Sum_probs=26.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
+++.|++-|.-|+||||+++.|+++|...
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~~ 34 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASGG 34 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 56889999999999999999999998863
No 384
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.95 E-value=0.19 Score=48.13 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
.+..|+++|.+|+|||||.+.|...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999888743
No 385
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.91 E-value=0.4 Score=44.03 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..+-|+++|.+|+|||||..+|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999988754
No 386
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.88 E-value=0.55 Score=55.69 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.3
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
|.=|+|.|.||+|||.+|++|+..++.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCC
Confidence 344889999999999999999988654
No 387
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=87.84 E-value=0.39 Score=54.72 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=28.0
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEe
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~ 385 (699)
-+++++|.||+||||+++.|.+.+...+.+..+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 4788999999999999999999887766555443
No 388
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.83 E-value=0.34 Score=44.97 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
+++=|+++|.+|+|||||..+|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999998743
No 389
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.75 E-value=0.41 Score=44.01 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
+++-|+++|.||+|||||..+|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 456799999999999999999874
No 390
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.72 E-value=0.37 Score=43.66 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.2
Q ss_pred cEEEEEEccCCCChhHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
++=|+++|.+|+|||||..+|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45689999999999999998875
No 391
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.71 E-value=0.29 Score=44.69 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.7
Q ss_pred EEEEEEccCCCChhHHHHHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLT 372 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La 372 (699)
+=|+++|.||+|||||..+|.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 348999999999999999985
No 392
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=87.60 E-value=0.45 Score=48.60 Aligned_cols=40 Identities=10% Similarity=-0.030 Sum_probs=32.9
Q ss_pred cEEEEEE--ccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 351 HLAIVLV--GLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 351 ~~lIvmv--GLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
+.+.++. +-.|+||||+|..|+..|...|.++-+++.|-.
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q 76 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQ 76 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4444444 699999999999999999988999988887644
No 393
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.58 E-value=0.27 Score=44.68 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=18.1
Q ss_pred EEEEEccCCCChhHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLT 372 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La 372 (699)
=|+++|.||+|||||.++|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999998885
No 394
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle, glycoprotein phosphohistidine, hydrolase; HET: NEP NAG; 1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB: 1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Probab=87.35 E-value=1.1 Score=48.92 Aligned_cols=47 Identities=21% Similarity=0.133 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcc---CCCCEEEEcChHHHHHHHhhh
Q 005388 580 GDTILSDAGEIYAKKLANFVEKRLKS---ERAASIWTSTLQRTILTASPI 626 (699)
Q Consensus 580 GD~pLTe~G~~QA~~La~~L~~~l~~---~~~~~V~sSpL~RA~QTA~~i 626 (699)
|...||+.|.+|...+|++|+++... ...-.|+||...||++||+.+
T Consensus 100 g~G~LT~~G~~q~~~lG~~lr~rY~~ll~~~~v~vrST~~~Rti~Sa~~f 149 (442)
T 1qwo_A 100 GADDLTPFGEQQLVNSGIKFYQRYKALARSVVPFIRASGSDRVIASGEKF 149 (442)
T ss_dssp CSSSBCHHHHHHHHHHHHHHHHHTHHHHTTCCCEEEEESCHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHhccCceEEEeCCccHHHHHHHHH
Confidence 35679999999999999999876321 122469999999999999987
No 395
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=87.24 E-value=0.29 Score=57.31 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=22.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
-++|+|.||+|||++|+.|++.+.
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999999984
No 396
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=87.09 E-value=0.35 Score=45.21 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=20.8
Q ss_pred CccEEEEEEccCCCChhHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
.+.+-|+++|.+|+|||||..+|..
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhc
Confidence 3567799999999999999998874
No 397
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=87.07 E-value=0.54 Score=43.79 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
.++-|+++|.+|+|||||..+|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999988754
No 398
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.05 E-value=0.38 Score=45.81 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCChhHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
.+-|+++|.+|+|||||.+.|...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999999854
No 399
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.01 E-value=0.29 Score=49.13 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.-++.++|.+|||||||.+.|+..+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4579999999999999999998553
No 400
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.00 E-value=2.8 Score=54.37 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=32.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
++-+++++|-||+||||+|.++...-...|.++..++..
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~e 1118 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1118 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcc
Confidence 456799999999999999999998777678787777654
No 401
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.99 E-value=0.3 Score=51.15 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.7
Q ss_pred EEEEEEccCCCChhHHHHHHHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
-+++++|+.||||||+.+.|...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 37899999999999999999865
No 402
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.96 E-value=0.48 Score=50.74 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=32.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCceEeeh-hhHHH
Q 005388 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV-GKYRR 392 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~-gdyRr 392 (699)
++++|.+||||||+.+.|...+...+.+..+++. ++|+.
T Consensus 38 ~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 77 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYKE 77 (392)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCSHH
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCHHH
Confidence 6789999999999999999888777888878865 34444
No 403
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.94 E-value=0.4 Score=43.44 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.3
Q ss_pred cEEEEEEccCCCChhHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
++=|+++|.+|+|||||..+|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999888743
No 404
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.94 E-value=0.32 Score=48.10 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
.-++.++|..|||||||.+.|+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 447889999999999999999976
No 405
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=86.94 E-value=0.4 Score=43.44 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=20.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
.++-|+++|.+|+|||||..+|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 356799999999999999998875
No 406
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=86.93 E-value=0.39 Score=44.14 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=20.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
..+-|+++|.+|+|||||..+|..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999988863
No 407
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=86.92 E-value=0.56 Score=50.12 Aligned_cols=39 Identities=15% Similarity=0.079 Sum_probs=33.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
.+.+.++.|-.|.||||+|..|+..|...|.++-+++.|
T Consensus 143 ~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 143 SSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 445555567999999999999999999889999999876
No 408
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.90 E-value=0.31 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.5
Q ss_pred EEEEEEccCCCChhHHHHHHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~ 373 (699)
+-|+++|.||+|||||.+.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3489999999999999999875
No 409
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.80 E-value=0.43 Score=43.45 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..+-|+++|.+|+|||||..+|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999888743
No 410
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=86.80 E-value=0.3 Score=51.98 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=22.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
...+.++|-+|||||||++.|+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998754
No 411
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.80 E-value=0.29 Score=48.74 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.-++.++|..|||||||.+.|+..+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998543
No 412
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.77 E-value=0.49 Score=44.69 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=22.0
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
.+.+=|+++|.+|+|||||..+|...
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45677999999999999999887753
No 413
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.73 E-value=0.31 Score=49.01 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.0
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.-++.++|.+|||||||.+.|+..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998654
No 414
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.69 E-value=0.49 Score=44.46 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
..+-|+++|.+|+|||||..+|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 456799999999999999998875
No 415
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=86.68 E-value=0.22 Score=55.91 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
=|+|+|.||+|||++|+.|+..+.
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred eeEeecCchHHHHHHHHHHHHHHh
Confidence 488999999999999999998763
No 416
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=86.63 E-value=0.43 Score=43.83 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
..+=|+++|.+|+|||||..+|..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 456699999999999999998874
No 417
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=86.44 E-value=0.64 Score=52.73 Aligned_cols=39 Identities=31% Similarity=0.302 Sum_probs=35.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
++.++++.|.+|.||||+|..|+..|...|.++-+++.|
T Consensus 326 ~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~D 364 (589)
T 1ihu_A 326 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD 364 (589)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCC
Confidence 467888999999999999999999999889999888765
No 418
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=86.42 E-value=2 Score=46.96 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=25.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhhcCCCceE
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv 384 (699)
-+.++|-||+|||||++.|++.+...+-++++
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~ 207 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL 207 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE
T ss_pred EEEEecCCCCChhHHHHHHHHHHhhcCCCeeE
Confidence 47789999999999999999988765444443
No 419
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=86.41 E-value=0.42 Score=49.17 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=22.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+++++|.+|+|||++++.+++.+.
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999998864
No 420
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.39 E-value=0.45 Score=43.81 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
.++-|+++|.+|+|||||..+|..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 456799999999999999998864
No 421
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=86.39 E-value=0.37 Score=48.36 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=32.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gd 389 (699)
+.+.++.+-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 7 ~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 445555588899999999999999998899998888764
No 422
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=86.38 E-value=0.45 Score=43.22 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
+.+=|+++|.+|+|||||.++|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3466999999999999999998754
No 423
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=86.33 E-value=2.1 Score=44.60 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=22.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
...++|.|.||+||||+|+.|++.++
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~ 43 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVE 43 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45899999999999999999998643
No 424
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.32 E-value=0.48 Score=43.01 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.0
Q ss_pred cEEEEEEccCCCChhHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
.+=|+++|.+|+|||||..+|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45689999999999999998873
No 425
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.25 E-value=0.5 Score=44.28 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
+.+-|+++|.+|+|||||..+|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 567899999999999999998873
No 426
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=86.33 E-value=0.14 Score=48.98 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=20.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
+.+-|+++|.+|+|||||..+|..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 456799999999999999988763
No 427
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=86.23 E-value=0.39 Score=48.38 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
..-++.++|..|||||||.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999998654
No 428
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=86.21 E-value=0.39 Score=48.51 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=21.3
Q ss_pred EEEEEEccCCCChhHHHHHHHHHH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
-++.++|..||||||+.+.|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998654
No 429
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=86.20 E-value=0.32 Score=52.71 Aligned_cols=31 Identities=23% Similarity=0.092 Sum_probs=24.1
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHHHhhcC
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~L~~~g 379 (699)
.+.+.|++-|.-|+||||+++.|+++|...+
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g 77 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 3567899999999999999999999987655
No 430
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.17 E-value=0.38 Score=44.60 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=20.9
Q ss_pred CccEEEEEEccCCCChhHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLT 372 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La 372 (699)
..++-|+++|.+|+|||||..+|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 356789999999999999998876
No 431
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.05 E-value=0.42 Score=50.87 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=23.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
..-++.++|-||||||||++.|+..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999765
No 432
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.01 E-value=0.43 Score=43.25 Aligned_cols=21 Identities=48% Similarity=0.491 Sum_probs=18.8
Q ss_pred EEEEccCCCChhHHHHHHHHH
Q 005388 354 IVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~~ 374 (699)
|+++|.+|+|||||..+|...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998753
No 433
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=85.94 E-value=0.81 Score=49.98 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q 005388 353 AIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~ 374 (699)
.|+++|.|++|||||-.+|...
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998743
No 434
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=85.93 E-value=0.5 Score=44.78 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..+-|+++|.+|+|||||..+|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999988753
No 435
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=85.84 E-value=0.51 Score=44.31 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
...-|+++|.+|+|||||..+|..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 457799999999999999988864
No 436
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=85.83 E-value=0.45 Score=43.56 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
+++-|+++|.+|+|||||..+|..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 346799999999999999998873
No 437
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=85.81 E-value=0.43 Score=44.48 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
..+=|+++|.||+|||||.+.|....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 45669999999999999987776543
No 438
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=85.72 E-value=0.44 Score=44.02 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=20.6
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
+.+=|+++|.+|+|||||..+|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 346699999999999999988874
No 439
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=85.69 E-value=0.51 Score=43.57 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
..+-|+++|.+|+|||||..+|..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhh
Confidence 356799999999999999988874
No 440
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=85.67 E-value=0.52 Score=43.44 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
.++=|+++|.+|+|||||..+|..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 456799999999999999988874
No 441
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.66 E-value=0.36 Score=49.54 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.-++.++|..|||||||.+.|+..+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4579999999999999999998543
No 442
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=85.66 E-value=0.47 Score=47.65 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.2
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
.++-|+|+|.||+|||||...|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 567899999999999999988863
No 443
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.64 E-value=0.43 Score=48.31 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCChhHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
.-++.++|..|||||||.+.|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999964
No 444
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=85.64 E-value=0.81 Score=44.38 Aligned_cols=35 Identities=20% Similarity=0.116 Sum_probs=28.9
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEee
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~ 386 (699)
.+.+..+-+|+||||+|..|+..|...|.++-+++
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 44555567999999999999999998888887764
No 445
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.62 E-value=3.1 Score=53.16 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=31.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~g 388 (699)
+.-++++.|-||+||||+|.+++......+..+-.|+..
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E 420 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 420 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 456899999999999999999998876666666666553
No 446
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.61 E-value=0.45 Score=44.70 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+.+++|-.||||||+.++|.--|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 789999999999999999987654
No 447
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=85.57 E-value=0.5 Score=53.16 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
...+|.++|++|.||||||++++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999996
No 448
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.57 E-value=0.41 Score=56.99 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=29.7
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhhH
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gdy 390 (699)
.-++|+|-||+|||++|+.|++.+...+.....++...+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 627 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc
Confidence 378999999999999999999998654444445554433
No 449
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=85.56 E-value=2.4 Score=44.20 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=26.2
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 005388 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (699)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~el~~~~~~vifIE~~c~d~e~i~rrI~~r 482 (699)
.|..||+|..- +-+..+.......++|-+..++.+.+++|++++
T Consensus 188 ~gk~viLdid~------qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r 231 (292)
T 3tvt_A 188 KGKHCILDVSG------NAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRM 231 (292)
T ss_dssp HTCEEEECCCT------HHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTS
T ss_pred cCCcEEEeccc------hhhhhcccccccceEEEEECCCHHHHHHHHhCC
Confidence 59999998752 333334222333344545567788888876543
No 450
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=85.52 E-value=0.63 Score=43.15 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..+=|+++|.+|+|||||..+|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999988743
No 451
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=85.49 E-value=0.49 Score=46.75 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=21.4
Q ss_pred CccEEEEEEccCCCChhHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
...+-|+++|.+|+|||||...|..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHcC
Confidence 3567799999999999999998874
No 452
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=85.45 E-value=0.41 Score=45.77 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLT 372 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La 372 (699)
..+-|+++|.||+|||||.++|.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45779999999999999998884
No 453
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=85.44 E-value=0.43 Score=44.40 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=18.2
Q ss_pred EEEEccCCCChhHHHHHHHH
Q 005388 354 IVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 354 IvmvGLPGSGKSTlAr~La~ 373 (699)
|+++|.+|+|||||..+|..
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999988874
No 454
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=85.43 E-value=1.3 Score=48.24 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
.++-|+++|.||+|||||.+.|...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999998754
No 455
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=85.39 E-value=0.53 Score=44.23 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.0
Q ss_pred CccEEEEEEccCCCChhHHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
...+=|+++|.+|+|||||..+|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 35567999999999999999988753
No 456
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.38 E-value=0.16 Score=53.48 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.2
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.-++.++|.+|||||||.+.|...+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 4579999999999999999999765
No 457
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.38 E-value=0.39 Score=49.04 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.-++.++|..|||||||.+.|+..+
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998543
No 458
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=85.36 E-value=0.46 Score=44.03 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=20.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
+..-|+++|.+|+|||||..+|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 456799999999999999988873
No 459
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=85.30 E-value=0.39 Score=48.63 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.-++.++|.+|||||||.+.|+..+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998653
No 460
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=85.29 E-value=0.55 Score=44.70 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
+.+=|+++|.+|+|||||..+|...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 4567999999999999999998853
No 461
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.28 E-value=0.71 Score=50.57 Aligned_cols=29 Identities=24% Similarity=0.140 Sum_probs=25.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
..-+|+++|.+||||||+.+.|...+...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 34589999999999999999999887643
No 462
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=85.25 E-value=0.58 Score=44.01 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.7
Q ss_pred CccEEEEEEccCCCChhHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
.+++-|+++|.+|+|||||..+|..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 3567799999999999999998874
No 463
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=85.18 E-value=0.53 Score=43.88 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=20.1
Q ss_pred cEEEEEEccCCCChhHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..-|+++|.+|+|||||..+|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 446889999999999999888643
No 464
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=85.18 E-value=0.54 Score=43.84 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
+++-|+++|.+|+|||||..+|..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 567799999999999999988874
No 465
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=85.13 E-value=0.6 Score=47.78 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=32.2
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHhhcCCCceEeehhh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~~~gi~tdv~~~gd 389 (699)
.+.+..+-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 6 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 6 VIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 44555688999999999999999998899998888764
No 466
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=85.12 E-value=0.55 Score=44.44 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.2
Q ss_pred CccEEEEEEccCCCChhHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
..++=|+++|.+|+|||||..+|..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3456699999999999999999863
No 467
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=85.07 E-value=0.49 Score=45.36 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=20.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
+.+-|+++|.+|+|||||..+|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998754
No 468
>3k4q_A 3-phytase A; PHYA, 3-phosphotase, MYO-inositol hexakis phosphate phosphohydrolase, 37288-11-2, MYO-inositol hexakis sulfate, 62-1; HET: IHS NAG; 2.20A {Aspergillus niger} SCOP: c.60.1.2 PDB: 3k4p_A* 1ihp_A
Probab=85.03 E-value=1.5 Score=48.25 Aligned_cols=46 Identities=17% Similarity=0.060 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhc---cCCCCEEEEcChHHHHHHHhhh
Q 005388 581 DTILSDAGEIYAKKLANFVEKRLK---SERAASIWTSTLQRTILTASPI 626 (699)
Q Consensus 581 D~pLTe~G~~QA~~La~~L~~~l~---~~~~~~V~sSpL~RA~QTA~~i 626 (699)
+..||+.|.+|...+|.++.++.. ...--.+++|...||++||+.+
T Consensus 102 ~g~LT~~G~~~~~~lG~~~r~rY~~l~~~~~~~~rst~~~Rt~~Sa~~f 150 (444)
T 3k4q_A 102 ADDLTPFGEQELVNSGIKFYQRYESLTRNIVPFIRSSGSSRVIASGKKF 150 (444)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHTHHHHTTCCCEEEEEESHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhHHhccCCceEEEeCCccHHHHHHHHH
Confidence 668999999999999999987632 1122368999999999999988
No 469
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.03 E-value=0.49 Score=48.48 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
.-++.++|..|||||||.+.|+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999964
No 470
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=85.02 E-value=0.52 Score=48.43 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=22.2
Q ss_pred EEEEEEccCCCChhHHHHHHHHHHh
Q 005388 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 352 ~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
-+++++|.+|+||||+++.+.+.++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC
Confidence 3789999999999999999998753
No 471
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=84.99 E-value=0.68 Score=43.42 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..+-|+++|.+|+|||||..+|...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999988753
No 472
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=84.98 E-value=0.42 Score=48.76 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.9
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.-++.++|..|||||||.+.|+..+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4579999999999999999998654
No 473
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=84.95 E-value=0.41 Score=49.47 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=21.9
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.-++.++|..|||||||.+.|+..+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998654
No 474
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=84.93 E-value=0.42 Score=49.09 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.-++.++|.+|||||||.+.|+..+
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998553
No 475
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=84.90 E-value=0.27 Score=58.25 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhh
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.+..++|+|.||+||||+|+.|+..++.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 3446889999999999999999998753
No 476
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=84.86 E-value=0.43 Score=48.94 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.-++.++|..|||||||.+.|+..+
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4579999999999999999998543
No 477
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=84.85 E-value=0.68 Score=43.33 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=21.1
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
..+-|+++|.+|+|||||..+|..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 456799999999999999998875
No 478
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.82 E-value=0.42 Score=48.05 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCChhHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
.-++.++|..|||||||.+.|+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999854
No 479
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=84.78 E-value=0.58 Score=43.70 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
.++-|+++|.+|+|||||..+|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567999999999999999988753
No 480
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=84.76 E-value=0.59 Score=44.03 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=21.5
Q ss_pred CccEEEEEEccCCCChhHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
...+=|+++|.+|+|||||..+|..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhc
Confidence 4566799999999999999988874
No 481
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=84.74 E-value=0.55 Score=48.88 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=22.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..-+++++|-||+|||++|..|+..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999975
No 482
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=84.71 E-value=0.8 Score=51.40 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.7
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..-+|+++|++|.||||+|++++..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhc
Confidence 4568999999999999999998753
No 483
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=84.69 E-value=0.43 Score=48.52 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.-++.++|..|||||||.+.|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998654
No 484
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=84.66 E-value=0.69 Score=43.65 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=21.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..+-|+++|.+|+|||||..+|...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999888743
No 485
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=84.59 E-value=0.5 Score=44.81 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.0
Q ss_pred cEEEEEEccCCCChhHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
.+=|+++|.+|+|||||..+|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 45699999999999999988864
No 486
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=84.53 E-value=0.44 Score=47.59 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=21.8
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.-++.++|..|||||||.+.|+..+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998654
No 487
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=84.48 E-value=0.54 Score=44.59 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=19.9
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
++.-|+++|.||+|||||.++|..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999998875
No 488
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=84.44 E-value=0.34 Score=51.57 Aligned_cols=30 Identities=23% Similarity=0.107 Sum_probs=23.3
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHHHhhcC
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~L~~~g 379 (699)
+.+.|.+-|.-|+||||+++.|+++|...+
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 457899999999999999999999987655
No 489
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=84.42 E-value=0.54 Score=44.95 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.0
Q ss_pred ccEEEEEEccCCCChhHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLT 372 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La 372 (699)
++.-|+++|.||+|||||.++|.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34568999999999999999886
No 490
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.42 E-value=0.57 Score=44.12 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..+=|+++|.+|+|||||..+|...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcC
Confidence 3456999999999999999988864
No 491
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=84.34 E-value=0.66 Score=43.75 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.5
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..+=|+++|.+|+|||||..+|...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 4577999999999999999888753
No 492
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=84.34 E-value=0.74 Score=44.95 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.4
Q ss_pred CccEEEEEEccCCCChhHHHHHHHH
Q 005388 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 349 ~~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
....-|+++|.+|+|||||..+|..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567799999999999999988864
No 493
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.29 E-value=0.6 Score=54.53 Aligned_cols=28 Identities=29% Similarity=0.147 Sum_probs=23.9
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHhhc
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~~~ 378 (699)
+.-++++|-||+|||++|+.|++.+...
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~~~ 234 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 3457899999999999999999998643
No 494
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=84.27 E-value=1.3 Score=46.14 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=18.2
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHHh
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L~ 376 (699)
+.+||++|. ||+||.++|.+.+.
T Consensus 105 ~r~ivl~GP---gK~tl~~~L~~~~~ 127 (295)
T 1kjw_A 105 ARPIIILGP---TKDRANDDLLSEFP 127 (295)
T ss_dssp CCCEEEEST---THHHHHHHHHHHCT
T ss_pred CCEEEEECC---CHHHHHHHHHhhCc
Confidence 446788884 89999999988754
No 495
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=84.14 E-value=0.37 Score=55.04 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=22.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHhh
Q 005388 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (699)
Q Consensus 353 lIvmvGLPGSGKSTlAr~La~~L~~ 377 (699)
.++|+|-||+||||+|+.|+..+..
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCc
Confidence 6899999999999999999998753
No 496
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=84.08 E-value=0.49 Score=48.41 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.-++.++|..|||||||.+.|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4579999999999999999998654
No 497
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=83.99 E-value=0.62 Score=43.72 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.8
Q ss_pred ccEEEEEEccCCCChhHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~ 373 (699)
.+.-|+++|.+|+|||||..+|..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999988863
No 498
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.94 E-value=0.72 Score=43.59 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=21.4
Q ss_pred ccEEEEEEccCCCChhHHHHHHHHH
Q 005388 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (699)
Q Consensus 350 ~~~lIvmvGLPGSGKSTlAr~La~~ 374 (699)
..+=|+++|.+|+|||||..+|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999988753
No 499
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.93 E-value=0.5 Score=48.21 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.-++.++|..|||||||.+.|+..+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998543
No 500
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=83.88 E-value=0.41 Score=47.52 Aligned_cols=25 Identities=24% Similarity=0.285 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCChhHHHHHHHHHH
Q 005388 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (699)
Q Consensus 351 ~~lIvmvGLPGSGKSTlAr~La~~L 375 (699)
.-++.++|..||||||+.+.|+..+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998654
Done!