Query 005389
Match_columns 699
No_of_seqs 458 out of 2890
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 22:40:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 2E-103 4E-108 897.3 42.9 602 20-695 2-607 (657)
2 PF01031 Dynamin_M: Dynamin ce 100.0 9.6E-58 2.1E-62 484.6 23.0 287 235-521 2-290 (295)
3 smart00053 DYNc Dynamin, GTPas 100.0 1.2E-46 2.6E-51 384.0 26.8 239 22-262 1-239 (240)
4 KOG0447 Dynamin-like GTP bindi 100.0 1E-33 2.2E-38 301.8 31.3 421 21-456 280-724 (980)
5 PF00350 Dynamin_N: Dynamin fa 99.9 4.2E-22 9.1E-27 193.4 14.9 166 50-225 1-168 (168)
6 COG0218 Predicted GTPase [Gene 99.6 1.4E-14 3.1E-19 141.7 16.9 127 45-232 22-152 (200)
7 COG1159 Era GTPase [General fu 99.6 1.4E-14 3.1E-19 149.0 16.6 125 49-233 8-132 (298)
8 PRK09866 hypothetical protein; 99.6 3.1E-13 6.7E-18 151.7 28.0 192 25-232 51-306 (741)
9 COG1160 Predicted GTPases [Gen 99.6 1.8E-14 3.9E-19 156.0 15.4 124 48-230 4-127 (444)
10 smart00302 GED Dynamin GTPase 99.6 3.4E-15 7.4E-20 130.5 6.2 47 649-695 1-47 (92)
11 COG0699 Predicted GTPases (dyn 99.6 7.4E-14 1.6E-18 160.5 17.9 377 97-523 2-379 (546)
12 COG0486 ThdF Predicted GTPase 99.5 7.5E-13 1.6E-17 143.9 22.5 151 21-232 190-341 (454)
13 TIGR00436 era GTP-binding prot 99.5 8.4E-13 1.8E-17 138.8 18.8 120 49-230 2-122 (270)
14 COG3596 Predicted GTPase [Gene 99.5 3.4E-13 7.4E-18 137.0 12.4 185 46-309 37-227 (296)
15 COG1160 Predicted GTPases [Gen 99.5 6.9E-13 1.5E-17 143.8 15.5 206 17-308 145-355 (444)
16 PRK00089 era GTPase Era; Revie 99.4 3.4E-12 7.3E-17 135.6 18.8 121 49-230 7-128 (292)
17 PF02421 FeoB_N: Ferrous iron 99.4 3.3E-13 7.1E-18 129.3 9.6 117 49-230 2-120 (156)
18 TIGR03156 GTP_HflX GTP-binding 99.4 2.9E-12 6.4E-17 139.2 17.0 126 45-229 187-315 (351)
19 COG1084 Predicted GTPase [Gene 99.4 3.1E-12 6.8E-17 132.9 15.1 142 30-231 152-296 (346)
20 PF01926 MMR_HSR1: 50S ribosom 99.4 4E-12 8.7E-17 115.9 13.4 115 49-224 1-116 (116)
21 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 5.8E-12 1.3E-16 125.9 14.7 133 49-240 2-140 (196)
22 cd04163 Era Era subfamily. Er 99.4 1.6E-11 3.4E-16 117.0 15.7 122 47-229 3-125 (168)
23 cd01895 EngA2 EngA2 subfamily. 99.4 1.6E-11 3.5E-16 118.2 15.5 127 47-230 2-128 (174)
24 PRK00454 engB GTP-binding prot 99.4 1.9E-11 4.2E-16 121.4 16.5 126 45-231 22-151 (196)
25 TIGR03594 GTPase_EngA ribosome 99.3 2.8E-11 6.1E-16 135.5 18.9 150 21-228 144-296 (429)
26 PRK11058 GTPase HflX; Provisio 99.3 2.1E-11 4.5E-16 135.6 17.5 125 46-229 196-323 (426)
27 PRK00093 GTP-binding protein D 99.3 3.8E-11 8.3E-16 134.7 19.8 151 21-229 146-298 (435)
28 cd01897 NOG NOG1 is a nucleola 99.3 2.7E-11 5.8E-16 117.0 15.4 25 48-72 1-25 (168)
29 TIGR03598 GTPase_YsxC ribosome 99.3 1.4E-11 3.1E-16 121.1 13.3 125 45-230 16-144 (179)
30 PRK12299 obgE GTPase CgtA; Rev 99.3 4E-11 8.7E-16 129.4 16.7 124 47-230 158-286 (335)
31 PRK05291 trmE tRNA modificatio 99.3 1.2E-10 2.7E-15 130.7 21.2 145 23-230 190-336 (449)
32 PRK03003 GTP-binding protein D 99.3 9.3E-11 2E-15 132.8 19.9 151 20-229 182-336 (472)
33 PRK15494 era GTPase Era; Provi 99.3 9.8E-11 2.1E-15 127.0 18.8 122 48-230 53-175 (339)
34 cd01878 HflX HflX subfamily. 99.3 4.6E-11 1E-15 119.8 15.1 127 45-230 39-168 (204)
35 PRK03003 GTP-binding protein D 99.3 5.6E-11 1.2E-15 134.6 17.4 124 45-229 36-160 (472)
36 TIGR00450 mnmE_trmE_thdF tRNA 99.3 4.7E-10 1E-14 125.6 24.5 148 21-230 177-325 (442)
37 PRK12298 obgE GTPase CgtA; Rev 99.3 5.9E-11 1.3E-15 130.6 16.9 123 47-230 159-290 (390)
38 KOG0448 Mitofusin 1 GTPase, in 99.3 6.3E-10 1.4E-14 124.7 24.8 167 47-236 109-282 (749)
39 COG2262 HflX GTPases [General 99.3 8E-11 1.7E-15 126.1 17.0 167 44-306 189-358 (411)
40 TIGR03594 GTPase_EngA ribosome 99.3 4.8E-11 1E-15 133.6 15.6 121 49-230 1-122 (429)
41 PRK09518 bifunctional cytidyla 99.3 1.7E-10 3.6E-15 136.9 20.7 153 19-230 418-576 (712)
42 cd01876 YihA_EngB The YihA (En 99.3 7E-11 1.5E-15 113.0 14.4 122 49-231 1-126 (170)
43 cd01894 EngA1 EngA1 subfamily. 99.3 5.5E-11 1.2E-15 112.9 13.5 75 149-230 46-120 (157)
44 PF02212 GED: Dynamin GTPase e 99.3 8.1E-12 1.8E-16 109.5 7.0 48 649-696 1-48 (92)
45 KOG1423 Ras-like GTPase ERA [C 99.3 5.6E-11 1.2E-15 121.9 13.7 128 48-233 73-203 (379)
46 cd01898 Obg Obg subfamily. Th 99.3 5.9E-11 1.3E-15 114.7 13.4 24 49-72 2-25 (170)
47 cd01853 Toc34_like Toc34-like 99.2 1.2E-10 2.6E-15 120.7 15.3 131 44-232 28-166 (249)
48 PRK04213 GTP-binding protein; 99.2 1.8E-10 3.9E-15 115.2 15.6 125 45-230 7-145 (201)
49 PRK12296 obgE GTPase CgtA; Rev 99.2 1.5E-10 3.3E-15 129.8 16.3 26 46-71 158-183 (500)
50 cd00880 Era_like Era (E. coli 99.2 1.7E-10 3.8E-15 108.4 14.5 76 148-231 45-120 (163)
51 cd04164 trmE TrmE (MnmE, ThdF, 99.2 2.5E-10 5.4E-15 108.2 15.3 119 49-230 3-122 (157)
52 cd01887 IF2_eIF5B IF2/eIF5B (i 99.2 7.8E-11 1.7E-15 113.5 11.8 116 48-229 1-116 (168)
53 PRK09518 bifunctional cytidyla 99.2 1.3E-10 2.8E-15 137.8 16.0 123 46-229 274-397 (712)
54 TIGR02729 Obg_CgtA Obg family 99.2 1.6E-10 3.4E-15 124.6 15.2 125 46-230 156-288 (329)
55 PF04548 AIG1: AIG1 family; I 99.2 5.3E-11 1.2E-15 120.6 10.7 132 49-239 2-139 (212)
56 cd04104 p47_IIGP_like p47 (47- 99.2 2.1E-10 4.6E-15 114.8 14.8 71 148-230 52-122 (197)
57 TIGR00991 3a0901s02IAP34 GTP-b 99.2 3E-10 6.5E-15 119.7 16.2 149 22-239 21-178 (313)
58 PRK00093 GTP-binding protein D 99.2 2.5E-10 5.3E-15 128.2 16.6 122 47-229 1-123 (435)
59 cd04171 SelB SelB subfamily. 99.2 3.2E-10 7E-15 108.5 13.7 66 149-230 52-119 (164)
60 PRK12297 obgE GTPase CgtA; Rev 99.2 4.9E-10 1.1E-14 124.1 16.9 120 47-228 158-287 (424)
61 cd00881 GTP_translation_factor 99.2 3.7E-10 8.1E-15 110.7 13.5 67 148-229 62-128 (189)
62 cd01864 Rab19 Rab19 subfamily. 99.2 7.3E-10 1.6E-14 107.0 15.3 118 47-230 3-123 (165)
63 PF05049 IIGP: Interferon-indu 99.2 2.6E-10 5.6E-15 123.2 12.8 212 24-327 16-246 (376)
64 cd01868 Rab11_like Rab11-like. 99.1 5E-10 1.1E-14 107.9 13.5 116 48-229 4-122 (165)
65 PF10662 PduV-EutP: Ethanolami 99.1 3.4E-10 7.5E-15 106.3 11.6 63 152-229 40-103 (143)
66 cd01879 FeoB Ferrous iron tran 99.1 6.7E-10 1.4E-14 105.8 13.6 71 149-230 44-116 (158)
67 cd04142 RRP22 RRP22 subfamily. 99.1 1.3E-09 2.9E-14 109.2 16.2 123 49-229 2-130 (198)
68 cd01861 Rab6 Rab6 subfamily. 99.1 5.7E-10 1.2E-14 106.8 13.1 115 49-229 2-119 (161)
69 cd01866 Rab2 Rab2 subfamily. 99.1 5.7E-10 1.2E-14 108.3 13.1 117 47-229 4-123 (168)
70 PRK09554 feoB ferrous iron tra 99.1 7.5E-10 1.6E-14 131.2 16.0 121 48-230 4-127 (772)
71 cd00154 Rab Rab family. Rab G 99.1 5.9E-10 1.3E-14 105.3 12.4 115 48-228 1-118 (159)
72 KOG1191 Mitochondrial GTPase [ 99.1 3.4E-09 7.3E-14 115.4 18.2 128 46-232 267-406 (531)
73 cd04124 RabL2 RabL2 subfamily. 99.1 1.5E-09 3.3E-14 104.6 14.0 113 49-228 2-117 (161)
74 COG0370 FeoB Fe2+ transport sy 99.1 3.6E-10 7.7E-15 128.1 10.9 119 48-230 4-123 (653)
75 cd01862 Rab7 Rab7 subfamily. 99.1 2.4E-09 5.3E-14 103.5 15.4 115 49-229 2-123 (172)
76 cd04127 Rab27A Rab27a subfamil 99.1 2.4E-09 5.3E-14 104.7 15.4 67 149-229 64-134 (180)
77 cd04136 Rap_like Rap-like subf 99.1 1.7E-09 3.7E-14 103.7 14.0 115 48-229 2-120 (163)
78 cd01890 LepA LepA subfamily. 99.1 1.2E-09 2.6E-14 106.7 13.2 67 148-229 67-133 (179)
79 cd01867 Rab8_Rab10_Rab13_like 99.1 1.5E-09 3.2E-14 105.2 13.3 117 47-229 3-122 (167)
80 cd01865 Rab3 Rab3 subfamily. 99.1 1.4E-09 3E-14 105.1 13.0 68 149-230 51-121 (165)
81 cd04112 Rab26 Rab26 subfamily. 99.1 1.3E-09 2.8E-14 108.3 12.9 67 149-229 51-120 (191)
82 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.1 1.1E-09 2.5E-14 105.8 11.8 122 44-230 19-143 (221)
83 cd01850 CDC_Septin CDC/Septin. 99.1 1.3E-09 2.7E-14 115.0 13.2 137 49-231 6-159 (276)
84 cd04122 Rab14 Rab14 subfamily. 99.1 1.9E-09 4E-14 104.3 13.2 117 48-230 3-122 (166)
85 cd04106 Rab23_lke Rab23-like s 99.1 1.8E-09 3.9E-14 103.4 12.9 69 148-230 51-121 (162)
86 cd04118 Rab24 Rab24 subfamily. 99.1 2.4E-09 5.3E-14 106.2 14.1 25 49-73 2-26 (193)
87 cd04157 Arl6 Arl6 subfamily. 99.1 1.6E-09 3.4E-14 103.8 12.3 68 149-230 46-119 (162)
88 cd04113 Rab4 Rab4 subfamily. 99.1 2.1E-09 4.5E-14 103.1 13.2 115 49-229 2-119 (161)
89 cd04101 RabL4 RabL4 (Rab-like4 99.1 2.4E-09 5.2E-14 102.9 13.5 68 148-230 52-122 (164)
90 PF00009 GTP_EFTU: Elongation 99.1 5.1E-10 1.1E-14 111.1 9.1 69 145-228 67-135 (188)
91 cd04119 RJL RJL (RabJ-Like) su 99.0 2.1E-09 4.5E-14 103.2 12.5 115 49-229 2-124 (168)
92 cd01881 Obg_like The Obg-like 99.0 8.2E-10 1.8E-14 107.1 9.6 21 52-72 1-21 (176)
93 smart00175 RAB Rab subfamily o 99.0 2.3E-09 5E-14 102.7 12.5 67 149-229 50-119 (164)
94 cd04138 H_N_K_Ras_like H-Ras/N 99.0 4.6E-09 9.9E-14 100.2 14.5 116 48-229 2-120 (162)
95 cd01860 Rab5_related Rab5-rela 99.0 2.5E-09 5.4E-14 102.6 12.6 115 49-229 3-120 (163)
96 cd04120 Rab12 Rab12 subfamily. 99.0 5.3E-09 1.1E-13 105.3 15.4 69 148-229 49-119 (202)
97 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.0 2.2E-09 4.8E-14 103.6 12.3 67 149-229 52-121 (166)
98 PRK15467 ethanolamine utilizat 99.0 5.5E-09 1.2E-13 100.9 14.9 23 49-71 3-25 (158)
99 cd04114 Rab30 Rab30 subfamily. 99.0 5.2E-09 1.1E-13 101.1 14.8 117 46-229 6-126 (169)
100 cd04144 Ras2 Ras2 subfamily. 99.0 4.4E-09 9.6E-14 104.4 14.2 67 149-229 48-120 (190)
101 cd01893 Miro1 Miro1 subfamily. 99.0 4.9E-09 1.1E-13 101.5 14.1 67 149-230 48-118 (166)
102 KOG1954 Endocytosis/signaling 99.0 2.1E-09 4.5E-14 112.6 12.0 168 46-232 57-228 (532)
103 cd04107 Rab32_Rab38 Rab38/Rab3 99.0 8.3E-09 1.8E-13 103.4 16.1 68 148-229 50-124 (201)
104 cd04159 Arl10_like Arl10-like 99.0 2.9E-09 6.2E-14 100.7 12.0 68 149-230 45-116 (159)
105 TIGR00993 3a0901s04IAP86 chlor 99.0 4.7E-09 1E-13 118.9 15.6 125 48-230 119-251 (763)
106 smart00173 RAS Ras subfamily o 99.0 2.4E-09 5.1E-14 103.0 11.5 24 49-72 2-25 (164)
107 cd04145 M_R_Ras_like M-Ras/R-R 99.0 2.9E-09 6.3E-14 102.1 12.1 67 149-229 51-121 (164)
108 cd04147 Ras_dva Ras-dva subfam 99.0 8E-09 1.7E-13 103.3 15.7 67 149-229 48-118 (198)
109 cd04110 Rab35 Rab35 subfamily. 99.0 8.4E-09 1.8E-13 103.3 15.6 117 47-229 6-124 (199)
110 cd01863 Rab18 Rab18 subfamily. 99.0 5.3E-09 1.2E-13 100.2 13.6 115 49-229 2-120 (161)
111 cd04108 Rab36_Rab34 Rab34/Rab3 99.0 8.6E-09 1.9E-13 100.6 15.2 115 49-229 2-120 (170)
112 cd04123 Rab21 Rab21 subfamily. 99.0 5.5E-09 1.2E-13 99.6 13.4 115 49-229 2-119 (162)
113 cd04116 Rab9 Rab9 subfamily. 99.0 9.1E-09 2E-13 99.7 14.9 117 47-228 5-127 (170)
114 cd04111 Rab39 Rab39 subfamily. 99.0 1.5E-08 3.2E-13 102.7 16.9 117 48-229 3-123 (211)
115 cd04139 RalA_RalB RalA/RalB su 99.0 4.6E-09 9.9E-14 100.5 12.5 115 49-229 2-119 (164)
116 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.0 3.5E-09 7.6E-14 104.6 12.0 68 148-229 52-123 (183)
117 cd01891 TypA_BipA TypA (tyrosi 99.0 3.2E-09 6.9E-14 105.8 11.7 68 148-230 65-132 (194)
118 cd04109 Rab28 Rab28 subfamily. 99.0 5.3E-09 1.1E-13 106.1 12.8 116 49-229 2-123 (215)
119 TIGR02528 EutP ethanolamine ut 99.0 9.3E-09 2E-13 96.7 13.6 24 49-72 2-25 (142)
120 cd04175 Rap1 Rap1 subgroup. T 99.0 4.5E-09 9.8E-14 101.2 11.7 68 148-229 49-120 (164)
121 cd04132 Rho4_like Rho4-like su 99.0 1.3E-08 2.8E-13 100.4 15.2 24 49-72 2-25 (187)
122 TIGR00491 aIF-2 translation in 99.0 5.6E-09 1.2E-13 120.3 14.2 134 45-229 2-135 (590)
123 cd01892 Miro2 Miro2 subfamily. 99.0 8.2E-09 1.8E-13 100.6 13.0 118 47-229 4-122 (169)
124 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.0 2E-08 4.4E-13 98.1 15.8 115 49-229 4-121 (172)
125 PTZ00369 Ras-like protein; Pro 98.9 1.1E-08 2.4E-13 101.4 14.1 26 47-72 5-30 (189)
126 cd04165 GTPBP1_like GTPBP1-lik 98.9 8.8E-09 1.9E-13 105.3 13.6 70 147-230 83-153 (224)
127 cd04169 RF3 RF3 subfamily. Pe 98.9 1.1E-08 2.5E-13 107.2 14.6 136 48-230 3-138 (267)
128 cd04176 Rap2 Rap2 subgroup. T 98.9 8.5E-09 1.9E-13 99.1 12.4 115 49-229 3-120 (163)
129 smart00178 SAR Sar1p-like memb 98.9 7.1E-09 1.5E-13 102.5 12.2 112 47-229 17-132 (184)
130 cd04161 Arl2l1_Arl13_like Arl2 98.9 8.4E-09 1.8E-13 100.3 12.3 69 148-230 43-115 (167)
131 cd00876 Ras Ras family. The R 98.9 1E-08 2.2E-13 97.6 12.5 114 49-229 1-118 (160)
132 cd04140 ARHI_like ARHI subfami 98.9 7.7E-09 1.7E-13 100.0 11.8 25 48-72 2-26 (165)
133 cd04154 Arl2 Arl2 subfamily. 98.9 6.7E-09 1.5E-13 101.3 11.5 114 46-230 13-130 (173)
134 cd04156 ARLTS1 ARLTS1 subfamil 98.9 7E-09 1.5E-13 99.3 11.3 68 148-229 44-115 (160)
135 cd04160 Arfrp1 Arfrp1 subfamil 98.9 1.2E-08 2.6E-13 98.4 13.0 69 148-230 50-122 (167)
136 cd04168 TetM_like Tet(M)-like 98.9 1.1E-08 2.4E-13 105.5 13.4 130 50-230 2-131 (237)
137 cd00879 Sar1 Sar1 subfamily. 98.9 1.6E-08 3.5E-13 100.0 14.1 121 36-229 10-134 (190)
138 PLN03110 Rab GTPase; Provision 98.9 3.1E-08 6.7E-13 100.7 16.4 117 47-229 12-131 (216)
139 cd04125 RabA_like RabA-like su 98.9 3.5E-08 7.7E-13 97.6 16.5 67 149-229 50-119 (188)
140 cd01889 SelB_euk SelB subfamil 98.9 2.6E-08 5.6E-13 99.1 15.5 66 148-230 68-135 (192)
141 smart00174 RHO Rho (Ras homolo 98.9 7E-09 1.5E-13 100.8 11.2 23 50-72 1-23 (174)
142 cd04162 Arl9_Arfrp2_like Arl9/ 98.9 7.2E-09 1.5E-13 100.5 11.1 69 148-230 44-114 (164)
143 cd04115 Rab33B_Rab33A Rab33B/R 98.9 1.2E-08 2.5E-13 99.3 12.6 116 48-229 3-123 (170)
144 cd01886 EF-G Elongation factor 98.9 6.3E-09 1.4E-13 109.3 11.4 83 132-230 49-131 (270)
145 cd01896 DRG The developmentall 98.9 2.3E-08 4.9E-13 102.9 15.3 23 49-71 2-24 (233)
146 cd00878 Arf_Arl Arf (ADP-ribos 98.9 9E-09 2E-13 98.4 11.2 69 148-230 43-115 (158)
147 PTZ00133 ADP-ribosylation fact 98.9 2.2E-08 4.7E-13 99.0 14.1 67 149-229 62-132 (182)
148 cd04166 CysN_ATPS CysN_ATPS su 98.9 6.4E-09 1.4E-13 105.1 10.5 84 131-230 61-145 (208)
149 PLN03108 Rab family protein; P 98.9 5E-08 1.1E-12 98.7 16.7 117 47-229 6-125 (210)
150 cd04151 Arl1 Arl1 subfamily. 98.9 1E-08 2.3E-13 98.2 11.2 68 149-230 44-115 (158)
151 cd04170 EF-G_bact Elongation f 98.9 2.9E-08 6.3E-13 104.3 15.5 68 148-230 64-131 (268)
152 PLN00223 ADP-ribosylation fact 98.9 3.6E-08 7.7E-13 97.4 15.0 68 149-230 62-133 (181)
153 cd04177 RSR1 RSR1 subgroup. R 98.9 2.6E-08 5.6E-13 96.6 13.8 115 49-229 3-120 (168)
154 cd01870 RhoA_like RhoA-like su 98.9 2.5E-08 5.4E-13 97.0 13.6 25 48-72 2-26 (175)
155 cd04158 ARD1 ARD1 subfamily. 98.9 2.2E-08 4.7E-13 97.4 13.0 67 149-229 44-114 (169)
156 smart00177 ARF ARF-like small 98.9 1E-08 2.2E-13 100.4 10.7 68 148-229 57-128 (175)
157 cd04149 Arf6 Arf6 subfamily. 98.9 2.1E-08 4.6E-13 97.6 12.3 67 149-229 54-124 (168)
158 PLN03118 Rab family protein; P 98.9 1.7E-08 3.7E-13 102.0 11.9 25 48-72 15-39 (211)
159 cd00877 Ran Ran (Ras-related n 98.9 1.4E-08 3.1E-13 98.6 10.8 66 148-228 49-117 (166)
160 cd01884 EF_Tu EF-Tu subfamily. 98.9 1.9E-08 4.2E-13 100.6 11.8 128 49-229 4-132 (195)
161 cd00157 Rho Rho (Ras homology) 98.9 1.5E-08 3.2E-13 98.0 10.6 24 49-72 2-25 (171)
162 cd01888 eIF2_gamma eIF2-gamma 98.8 4.7E-08 1E-12 98.3 14.5 23 49-71 2-24 (203)
163 cd04135 Tc10 TC10 subfamily. 98.8 3.2E-08 6.9E-13 96.1 12.5 24 49-72 2-25 (174)
164 cd04137 RheB Rheb (Ras Homolog 98.8 3.2E-08 7E-13 96.8 12.4 24 49-72 3-26 (180)
165 TIGR00475 selB selenocysteine- 98.8 4E-08 8.7E-13 113.8 15.0 68 148-230 50-118 (581)
166 TIGR00231 small_GTP small GTP- 98.8 4.3E-08 9.3E-13 91.9 12.4 30 48-78 2-31 (161)
167 cd04117 Rab15 Rab15 subfamily. 98.8 4.8E-08 1E-12 94.2 13.0 115 49-229 2-119 (161)
168 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.8 3.3E-08 7.2E-13 96.6 11.8 26 47-72 15-40 (174)
169 cd04128 Spg1 Spg1p. Spg1p (se 98.8 8.7E-08 1.9E-12 94.7 14.8 67 148-229 49-118 (182)
170 cd04150 Arf1_5_like Arf1-Arf5- 98.8 4.2E-08 9.2E-13 94.5 12.3 68 148-229 44-115 (159)
171 cd04134 Rho3 Rho3 subfamily. 98.8 4E-08 8.7E-13 97.5 12.4 69 148-230 48-119 (189)
172 cd04126 Rab20 Rab20 subfamily. 98.8 1.2E-07 2.7E-12 96.6 16.1 67 149-229 45-114 (220)
173 cd04143 Rhes_like Rhes_like su 98.8 8.4E-08 1.8E-12 99.6 15.0 24 49-72 2-25 (247)
174 cd00882 Ras_like_GTPase Ras-li 98.8 5.3E-08 1.2E-12 90.0 11.8 70 148-231 45-118 (157)
175 cd01874 Cdc42 Cdc42 subfamily. 98.8 7.8E-08 1.7E-12 94.3 13.5 116 48-230 2-120 (175)
176 cd04105 SR_beta Signal recogni 98.8 5.7E-08 1.2E-12 97.8 12.8 69 149-230 49-124 (203)
177 CHL00189 infB translation init 98.8 3.7E-08 8E-13 115.6 12.9 119 46-229 243-361 (742)
178 PRK10512 selenocysteinyl-tRNA- 98.8 6.7E-08 1.5E-12 112.4 15.0 67 149-230 52-119 (614)
179 PLN03071 GTP-binding nuclear p 98.8 5E-08 1.1E-12 99.4 12.2 67 148-229 62-131 (219)
180 cd01871 Rac1_like Rac1-like su 98.8 1.3E-07 2.9E-12 92.6 14.8 69 148-230 49-120 (174)
181 cd04146 RERG_RasL11_like RERG/ 98.8 2.3E-08 4.9E-13 96.5 9.1 24 49-72 1-24 (165)
182 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.8 2E-07 4.3E-12 95.7 16.4 117 46-229 12-131 (232)
183 cd04102 RabL3 RabL3 (Rab-like3 98.8 1.8E-07 3.9E-12 94.1 15.3 26 49-74 2-27 (202)
184 TIGR00487 IF-2 translation ini 98.7 4.3E-08 9.3E-13 113.2 11.9 116 46-229 86-201 (587)
185 cd04130 Wrch_1 Wrch-1 subfamil 98.7 7.6E-08 1.6E-12 93.8 11.9 24 49-72 2-25 (173)
186 TIGR01393 lepA GTP-binding pro 98.7 1.2E-07 2.7E-12 109.9 15.6 132 47-229 3-136 (595)
187 cd01885 EF2 EF2 (for archaea a 98.7 6.2E-08 1.4E-12 98.8 11.6 66 148-228 73-138 (222)
188 cd04148 RGK RGK subfamily. Th 98.7 5E-08 1.1E-12 99.5 10.9 24 49-72 2-25 (221)
189 PRK05306 infB translation init 98.7 3.8E-08 8.3E-13 116.4 11.1 115 46-229 289-403 (787)
190 cd04155 Arl3 Arl3 subfamily. 98.7 9.2E-08 2E-12 92.8 12.0 27 46-72 13-39 (173)
191 cd04121 Rab40 Rab40 subfamily. 98.7 9.8E-08 2.1E-12 95.0 11.8 67 148-229 55-124 (189)
192 TIGR00437 feoB ferrous iron tr 98.7 1E-07 2.2E-12 110.6 13.7 70 149-229 42-113 (591)
193 TIGR00484 EF-G translation elo 98.7 8.2E-08 1.8E-12 113.8 12.7 135 46-231 9-143 (689)
194 PRK04004 translation initiatio 98.7 1E-07 2.3E-12 110.2 13.0 134 44-228 3-136 (586)
195 cd04131 Rnd Rnd subfamily. Th 98.7 3.5E-07 7.5E-12 90.1 14.9 114 49-229 3-119 (178)
196 cd01875 RhoG RhoG subfamily. 98.7 3.5E-07 7.6E-12 91.0 15.0 116 48-230 4-122 (191)
197 cd04167 Snu114p Snu114p subfam 98.7 1.5E-07 3.2E-12 95.4 12.3 66 148-228 71-136 (213)
198 KOG0095 GTPase Rab30, small G 98.7 4.6E-07 9.9E-12 83.9 13.9 122 46-232 6-129 (213)
199 PRK05433 GTP-binding protein L 98.7 3.1E-07 6.8E-12 106.7 16.0 132 47-229 7-140 (600)
200 PF00735 Septin: Septin; Inte 98.7 7.6E-08 1.6E-12 101.6 9.7 139 49-232 6-159 (281)
201 COG1100 GTPase SAR1 and relate 98.7 8.3E-07 1.8E-11 89.7 16.6 120 48-234 6-130 (219)
202 PRK00007 elongation factor G; 98.7 1.5E-07 3.2E-12 111.6 12.7 135 46-231 9-143 (693)
203 KOG0084 GTPase Rab1/YPT1, smal 98.6 7.8E-08 1.7E-12 93.5 8.3 119 46-230 8-129 (205)
204 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.6 2.3E-07 4.9E-12 94.7 12.2 114 49-230 3-120 (222)
205 PRK12739 elongation factor G; 98.6 1.5E-07 3.3E-12 111.5 12.2 134 46-230 7-140 (691)
206 KOG1490 GTP-binding protein CR 98.6 5.2E-08 1.1E-12 106.1 7.3 148 25-231 144-297 (620)
207 COG0536 Obg Predicted GTPase [ 98.6 2.2E-07 4.7E-12 97.7 11.5 164 50-307 162-336 (369)
208 CHL00071 tufA elongation facto 98.6 1.6E-07 3.4E-12 104.7 11.0 68 148-230 75-143 (409)
209 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.6 2.5E-07 5.5E-12 91.5 11.3 115 48-229 6-123 (182)
210 TIGR01394 TypA_BipA GTP-bindin 98.6 2.9E-07 6.2E-12 106.7 13.1 129 48-230 2-131 (594)
211 PRK00741 prfC peptide chain re 98.6 4.1E-07 8.9E-12 104.0 14.1 138 46-230 9-146 (526)
212 smart00176 RAN Ran (Ras-relate 98.6 2.4E-07 5.2E-12 93.1 10.7 67 148-229 44-113 (200)
213 KOG1489 Predicted GTP-binding 98.6 1.3E-07 2.8E-12 98.1 8.5 122 47-230 196-327 (366)
214 cd01883 EF1_alpha Eukaryotic e 98.6 1.6E-07 3.4E-12 95.7 9.0 83 131-229 61-151 (219)
215 cd01899 Ygr210 Ygr210 subfamil 98.6 3.1E-06 6.8E-11 90.9 19.3 37 50-86 1-37 (318)
216 KOG0093 GTPase Rab3, small G p 98.6 6.5E-07 1.4E-11 82.8 11.7 118 148-310 70-189 (193)
217 cd04129 Rho2 Rho2 subfamily. 98.6 9.1E-07 2E-11 87.6 13.3 24 49-72 3-26 (187)
218 PLN03127 Elongation factor Tu; 98.5 4.2E-07 9E-12 102.1 11.7 130 47-229 61-191 (447)
219 PRK12317 elongation factor 1-a 98.5 1.8E-07 3.9E-12 104.9 8.7 80 132-229 69-153 (425)
220 PF08477 Miro: Miro-like prote 98.5 5.4E-08 1.2E-12 88.5 3.7 24 49-72 1-24 (119)
221 COG4917 EutP Ethanolamine util 98.5 2.3E-07 5.1E-12 83.8 7.6 103 48-229 2-104 (148)
222 KOG0078 GTP-binding protein SE 98.5 4.7E-07 1E-11 89.3 10.4 122 44-230 9-132 (207)
223 PF00071 Ras: Ras family; Int 98.5 3.4E-07 7.4E-12 87.7 9.2 115 49-229 1-118 (162)
224 PRK10218 GTP-binding protein; 98.5 3.8E-07 8.3E-12 105.6 11.0 131 46-230 4-135 (607)
225 PRK05506 bifunctional sulfate 98.5 6.2E-07 1.3E-11 105.4 12.6 66 148-229 104-171 (632)
226 cd04133 Rop_like Rop subfamily 98.5 4.2E-07 9.2E-12 89.4 9.5 115 49-230 3-120 (176)
227 PRK12736 elongation factor Tu; 98.5 6.5E-07 1.4E-11 99.3 12.1 129 48-229 13-142 (394)
228 TIGR02836 spore_IV_A stage IV 98.5 9.9E-07 2.2E-11 95.5 12.7 167 30-230 5-195 (492)
229 cd01900 YchF YchF subfamily. 98.5 3.7E-07 7.9E-12 95.8 9.0 37 50-86 1-37 (274)
230 TIGR02034 CysN sulfate adenyly 98.5 4E-07 8.7E-12 101.3 9.8 83 131-230 64-148 (406)
231 KOG2486 Predicted GTPase [Gene 98.5 4E-07 8.8E-12 93.0 8.7 78 149-230 184-263 (320)
232 PLN03126 Elongation factor Tu; 98.5 9.7E-07 2.1E-11 99.8 12.5 131 47-230 81-212 (478)
233 TIGR00503 prfC peptide chain r 98.5 1.2E-06 2.6E-11 100.2 13.4 137 46-229 10-146 (527)
234 PRK05124 cysN sulfate adenylyl 98.5 9.6E-07 2.1E-11 100.0 12.3 143 45-230 25-175 (474)
235 cd01882 BMS1 Bms1. Bms1 is an 98.5 9.6E-07 2.1E-11 90.4 11.2 65 148-230 83-148 (225)
236 PTZ00258 GTP-binding protein; 98.5 6.7E-07 1.5E-11 98.0 10.5 44 45-88 19-62 (390)
237 TIGR03680 eif2g_arch translati 98.5 1.4E-06 3E-11 97.1 13.0 67 148-230 80-149 (406)
238 PLN00023 GTP-binding protein; 98.4 1.2E-06 2.6E-11 93.3 11.6 29 44-72 18-46 (334)
239 TIGR00485 EF-Tu translation el 98.4 6.1E-07 1.3E-11 99.6 9.7 130 48-230 13-143 (394)
240 PRK13351 elongation factor G; 98.4 1.1E-06 2.5E-11 104.3 12.6 134 46-230 7-140 (687)
241 KOG1547 Septin CDC10 and relat 98.4 2.2E-06 4.7E-11 85.7 12.3 81 148-230 104-199 (336)
242 cd01858 NGP_1 NGP-1. Autoanti 98.4 7.6E-07 1.6E-11 85.7 8.9 53 22-77 80-132 (157)
243 PRK09601 GTP-binding protein Y 98.4 1.1E-06 2.3E-11 95.3 11.0 38 48-86 3-41 (364)
244 PRK12735 elongation factor Tu; 98.4 1.4E-06 3E-11 96.8 11.9 67 148-229 75-142 (396)
245 PRK00049 elongation factor Tu; 98.4 1.3E-06 2.8E-11 97.0 11.6 129 48-229 13-142 (396)
246 PF00025 Arf: ADP-ribosylation 98.4 4.7E-07 1E-11 88.9 6.5 69 148-230 58-130 (175)
247 cd04103 Centaurin_gamma Centau 98.4 5.3E-06 1.2E-10 80.0 13.1 24 49-72 2-25 (158)
248 PTZ00132 GTP-binding nuclear p 98.4 1.2E-05 2.7E-10 81.3 16.0 66 149-229 59-127 (215)
249 COG1163 DRG Predicted GTPase [ 98.3 5.5E-07 1.2E-11 94.0 6.0 25 48-72 64-88 (365)
250 PTZ00416 elongation factor 2; 98.3 1.9E-06 4E-11 104.1 11.5 65 149-228 93-157 (836)
251 PLN00116 translation elongatio 98.3 2.9E-06 6.3E-11 102.6 12.8 66 148-228 98-163 (843)
252 PRK07560 elongation factor EF- 98.3 2.3E-06 5E-11 102.1 11.8 134 46-229 19-153 (731)
253 COG2229 Predicted GTPase [Gene 98.3 6.7E-06 1.5E-10 79.5 12.2 128 45-230 8-136 (187)
254 PRK04000 translation initiatio 98.3 5.1E-06 1.1E-10 92.6 13.3 23 48-70 10-32 (411)
255 cd04178 Nucleostemin_like Nucl 98.3 1.9E-06 4.1E-11 84.5 8.7 32 47-78 117-148 (172)
256 TIGR00483 EF-1_alpha translati 98.3 2.6E-06 5.7E-11 95.5 10.9 81 132-229 70-155 (426)
257 KOG0098 GTPase Rab2, small G p 98.3 5E-06 1.1E-10 80.3 11.1 120 46-230 5-126 (216)
258 TIGR00490 aEF-2 translation el 98.3 3.4E-06 7.3E-11 100.5 12.2 67 148-229 86-152 (720)
259 KOG2655 Septin family protein 98.3 2.9E-06 6.2E-11 91.0 10.4 84 148-233 79-176 (366)
260 KOG0079 GTP-binding protein H- 98.3 5.2E-06 1.1E-10 77.0 10.2 118 47-230 8-127 (198)
261 COG5019 CDC3 Septin family pro 98.3 5.9E-06 1.3E-10 88.0 11.9 83 148-232 82-179 (373)
262 cd01849 YlqF_related_GTPase Yl 98.3 1.5E-06 3.3E-11 83.4 7.0 40 45-84 98-138 (155)
263 PF09439 SRPRB: Signal recogni 98.3 1.2E-06 2.5E-11 86.2 5.9 26 47-72 3-28 (181)
264 KOG0080 GTPase Rab18, small G 98.3 1.7E-06 3.7E-11 81.3 6.7 116 46-228 10-130 (209)
265 KOG0092 GTPase Rab5/YPT51 and 98.2 1.6E-06 3.4E-11 84.3 6.2 117 48-230 6-125 (200)
266 cd01855 YqeH YqeH. YqeH is an 98.2 3.2E-06 6.9E-11 84.0 8.5 44 21-72 109-152 (190)
267 PRK09602 translation-associate 98.2 5.9E-06 1.3E-10 91.4 11.0 39 48-86 2-40 (396)
268 KOG0075 GTP-binding ADP-ribosy 98.2 4.3E-06 9.3E-11 77.6 7.3 70 148-230 65-137 (186)
269 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 3.3E-06 7.2E-11 79.8 6.8 25 49-73 85-109 (141)
270 PRK12740 elongation factor G; 98.2 7.8E-06 1.7E-10 96.9 11.2 68 148-230 60-127 (668)
271 PTZ00327 eukaryotic translatio 98.2 1.8E-05 3.9E-10 89.0 13.5 66 149-230 118-186 (460)
272 cd01873 RhoBTB RhoBTB subfamil 98.2 8.6E-06 1.9E-10 81.5 9.5 66 148-229 66-134 (195)
273 cd01851 GBP Guanylate-binding 98.1 1.4E-05 3.1E-10 81.7 10.9 37 47-83 7-46 (224)
274 TIGR03596 GTPase_YlqF ribosome 98.1 1.5E-05 3.2E-10 84.3 9.6 56 22-77 88-148 (276)
275 KOG0410 Predicted GTP binding 98.1 2E-05 4.3E-10 82.3 10.0 128 43-229 174-308 (410)
276 PTZ00141 elongation factor 1- 98.0 1.8E-05 3.8E-10 89.2 10.2 22 49-70 9-30 (446)
277 PLN00043 elongation factor 1-a 98.0 2.2E-05 4.8E-10 88.4 10.7 83 132-229 70-159 (447)
278 KOG0087 GTPase Rab11/YPT3, sma 98.0 1.6E-05 3.4E-10 78.5 8.2 119 46-229 13-133 (222)
279 PRK09563 rbgA GTPase YlqF; Rev 98.0 1.1E-05 2.3E-10 85.8 7.5 56 22-77 91-151 (287)
280 KOG0073 GTP-binding ADP-ribosy 98.0 3.6E-05 7.8E-10 73.0 9.9 111 47-228 16-130 (185)
281 KOG1145 Mitochondrial translat 98.0 5.4E-05 1.2E-09 83.9 12.5 119 46-234 152-270 (683)
282 PRK09435 membrane ATPase/prote 98.0 0.00036 7.8E-09 75.3 18.7 24 47-70 56-79 (332)
283 KOG0086 GTPase Rab4, small G p 98.0 2.7E-05 5.9E-10 72.6 8.6 119 47-230 9-129 (214)
284 KOG0091 GTPase Rab39, small G 98.0 5.2E-05 1.1E-09 71.7 10.5 69 148-229 58-130 (213)
285 KOG0394 Ras-related GTPase [Ge 98.0 1.6E-05 3.4E-10 76.8 7.0 119 46-229 8-132 (210)
286 cd01856 YlqF YlqF. Proteins o 97.9 4.4E-05 9.5E-10 74.6 9.8 54 22-75 86-143 (171)
287 TIGR00157 ribosome small subun 97.9 2.5E-05 5.5E-10 81.0 8.5 27 48-74 121-147 (245)
288 PRK12288 GTPase RsgA; Reviewed 97.9 2E-05 4.4E-10 85.6 8.0 27 49-75 207-233 (347)
289 KOG4252 GTP-binding protein [S 97.9 5.3E-05 1.2E-09 72.6 9.4 67 149-230 70-139 (246)
290 PRK12289 GTPase RsgA; Reviewed 97.9 2.2E-05 4.9E-10 85.4 7.7 28 49-76 174-201 (352)
291 PF03193 DUF258: Protein of un 97.9 4.9E-06 1.1E-10 80.2 2.3 28 48-75 36-63 (161)
292 COG0532 InfB Translation initi 97.9 7.1E-05 1.5E-09 83.4 11.3 116 45-230 3-122 (509)
293 TIGR01425 SRP54_euk signal rec 97.9 0.00018 4E-09 79.8 14.2 79 148-237 183-261 (429)
294 KOG0090 Signal recognition par 97.9 5.9E-05 1.3E-09 74.7 9.1 70 149-232 83-162 (238)
295 PRK11889 flhF flagellar biosyn 97.9 5.5E-05 1.2E-09 82.4 9.7 100 149-261 322-421 (436)
296 TIGR00750 lao LAO/AO transport 97.9 0.00026 5.6E-09 75.8 14.7 25 46-70 33-57 (300)
297 COG0480 FusA Translation elong 97.8 9E-05 1.9E-09 86.9 11.5 136 46-231 9-144 (697)
298 COG1161 Predicted GTPases [Gen 97.8 0.0001 2.3E-09 79.5 9.6 26 48-73 133-158 (322)
299 TIGR03597 GTPase_YqeH ribosome 97.7 7.8E-05 1.7E-09 81.7 8.6 42 21-71 137-178 (360)
300 KOG0395 Ras-related GTPase [Ge 97.7 7.2E-05 1.6E-09 74.9 7.1 117 47-230 3-123 (196)
301 PRK14723 flhF flagellar biosyn 97.7 0.00029 6.2E-09 83.1 13.0 172 49-262 187-368 (767)
302 KOG1532 GTPase XAB1, interacts 97.7 0.001 2.2E-08 68.4 15.0 222 46-317 18-277 (366)
303 PRK13768 GTPase; Provisional 97.7 8.9E-05 1.9E-09 77.3 7.8 76 149-232 98-179 (253)
304 COG5256 TEF1 Translation elong 97.7 4.4E-05 9.6E-10 82.5 5.4 84 131-231 69-161 (428)
305 KOG0097 GTPase Rab14, small G 97.7 0.00019 4.1E-09 66.0 8.5 118 47-230 11-131 (215)
306 PRK14722 flhF flagellar biosyn 97.7 7.3E-05 1.6E-09 81.7 6.8 103 149-261 217-325 (374)
307 COG1162 Predicted GTPases [Gen 97.7 8.6E-05 1.9E-09 78.0 7.0 24 48-71 165-188 (301)
308 cd01859 MJ1464 MJ1464. This f 97.7 0.00028 6E-09 67.7 9.9 46 22-72 81-126 (156)
309 KOG0088 GTPase Rab21, small G 97.6 0.00027 5.8E-09 66.5 9.2 111 148-308 62-179 (218)
310 PRK12727 flagellar biosynthesi 97.6 0.00062 1.4E-08 77.0 13.6 100 148-261 429-528 (559)
311 PRK06731 flhF flagellar biosyn 97.6 0.001 2.2E-08 69.9 14.4 101 148-261 155-255 (270)
312 PRK10416 signal recognition pa 97.6 0.00022 4.9E-09 76.7 9.8 95 148-252 197-294 (318)
313 PRK00098 GTPase RsgA; Reviewed 97.6 0.00018 3.8E-09 76.9 8.7 25 48-72 165-189 (298)
314 PRK14721 flhF flagellar biosyn 97.6 0.00018 3.8E-09 79.9 8.9 100 149-261 271-370 (420)
315 KOG1144 Translation initiation 97.6 0.00084 1.8E-08 76.7 14.1 135 43-228 471-605 (1064)
316 PRK13796 GTPase YqeH; Provisio 97.6 6E-05 1.3E-09 82.8 5.0 24 48-71 161-184 (365)
317 KOG1707 Predicted Ras related/ 97.6 0.00034 7.4E-09 78.4 10.3 120 47-233 9-133 (625)
318 PRK05703 flhF flagellar biosyn 97.5 0.00099 2.2E-08 74.6 13.9 102 148-261 300-401 (424)
319 TIGR00092 GTP-binding protein 97.5 0.00019 4.1E-09 78.1 7.8 38 48-85 3-41 (368)
320 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00022 4.8E-09 75.8 8.2 26 48-73 162-187 (287)
321 KOG1486 GTP-binding protein DR 97.5 7.2E-05 1.6E-09 75.5 3.8 24 48-71 63-86 (364)
322 COG0012 Predicted GTPase, prob 97.5 0.0002 4.4E-09 77.0 7.3 37 48-84 3-39 (372)
323 PRK14845 translation initiatio 97.5 0.00083 1.8E-08 82.0 13.1 68 147-229 525-592 (1049)
324 PF04670 Gtr1_RagA: Gtr1/RagA 97.5 0.00051 1.1E-08 70.5 9.5 120 49-232 1-128 (232)
325 cd03112 CobW_like The function 97.5 0.0007 1.5E-08 65.4 10.0 23 48-70 1-23 (158)
326 cd03114 ArgK-like The function 97.5 0.001 2.3E-08 63.5 11.0 21 50-70 2-22 (148)
327 PRK12726 flagellar biosynthesi 97.4 0.0014 3.1E-08 71.4 12.9 96 149-259 287-384 (407)
328 PRK12723 flagellar biosynthesi 97.4 0.00067 1.5E-08 74.8 10.2 102 148-261 255-356 (388)
329 PRK14974 cell division protein 97.4 0.00036 7.8E-09 75.5 7.8 80 148-238 223-302 (336)
330 COG1703 ArgK Putative periplas 97.4 0.0023 5E-08 66.9 12.8 24 46-69 50-73 (323)
331 PRK12724 flagellar biosynthesi 97.4 0.00089 1.9E-08 74.0 10.4 103 148-261 300-403 (432)
332 PF00448 SRP54: SRP54-type pro 97.3 0.00083 1.8E-08 67.3 8.7 95 149-256 85-179 (196)
333 PRK10867 signal recognition pa 97.3 0.0015 3.3E-08 73.0 11.4 79 148-237 184-262 (433)
334 KOG3883 Ras family small GTPas 97.3 0.0024 5.1E-08 60.1 10.6 70 149-232 61-135 (198)
335 PRK00771 signal recognition pa 97.3 0.0011 2.3E-08 74.4 9.8 79 149-238 177-255 (437)
336 COG3276 SelB Selenocysteine-sp 97.3 0.0012 2.5E-08 72.3 9.6 68 149-231 51-119 (447)
337 KOG0070 GTP-binding ADP-ribosy 97.3 0.00028 6.1E-09 68.5 4.4 69 148-230 61-133 (181)
338 COG4108 PrfC Peptide chain rel 97.2 0.0029 6.4E-08 68.9 12.3 204 48-311 13-230 (528)
339 cd03115 SRP The signal recogni 97.2 0.0041 9E-08 60.6 12.5 78 148-236 83-160 (173)
340 PF03029 ATP_bind_1: Conserved 97.2 0.00054 1.2E-08 70.7 6.4 37 52-94 1-37 (238)
341 PRK06995 flhF flagellar biosyn 97.2 0.0021 4.6E-08 72.6 11.5 100 149-261 336-435 (484)
342 PTZ00099 rab6; Provisional 97.2 0.0018 4E-08 63.6 9.7 68 148-229 29-99 (176)
343 TIGR00064 ftsY signal recognit 97.2 0.0035 7.6E-08 66.1 12.3 82 148-238 155-240 (272)
344 KOG0081 GTPase Rab27, small G 97.2 0.00035 7.7E-09 65.8 4.1 69 149-230 68-139 (219)
345 KOG1491 Predicted GTP-binding 97.2 0.00074 1.6E-08 71.3 6.7 105 45-196 18-125 (391)
346 KOG0462 Elongation factor-type 97.1 0.0018 3.9E-08 72.3 9.2 131 47-230 60-192 (650)
347 TIGR00073 hypB hydrogenase acc 97.1 0.0038 8.1E-08 63.0 10.8 25 46-70 21-45 (207)
348 COG1217 TypA Predicted membran 97.1 0.00094 2E-08 73.1 6.3 135 45-232 3-137 (603)
349 PF03308 ArgK: ArgK protein; 97.0 0.0022 4.7E-08 66.2 8.5 25 46-70 28-52 (266)
350 KOG1424 Predicted GTP-binding 97.0 0.00072 1.6E-08 74.9 5.2 27 47-73 314-340 (562)
351 KOG0468 U5 snRNP-specific prot 97.0 0.0027 5.8E-08 72.0 9.3 133 47-228 128-262 (971)
352 KOG0074 GTP-binding ADP-ribosy 97.0 0.0022 4.7E-08 59.6 7.0 116 47-231 17-135 (185)
353 COG5192 BMS1 GTP-binding prote 97.0 0.0038 8.2E-08 69.4 9.9 45 187-232 135-180 (1077)
354 COG1419 FlhF Flagellar GTP-bin 96.9 0.0039 8.5E-08 68.1 9.9 172 47-262 203-383 (407)
355 KOG3859 Septins (P-loop GTPase 96.9 0.0018 3.9E-08 66.5 6.4 135 48-232 43-193 (406)
356 KOG0071 GTP-binding ADP-ribosy 96.8 0.019 4.2E-07 53.4 11.7 68 149-230 62-133 (180)
357 TIGR00959 ffh signal recogniti 96.8 0.0041 8.8E-08 69.6 8.6 93 148-253 183-275 (428)
358 TIGR03348 VI_IcmF type VI secr 96.7 0.009 2E-07 75.2 12.2 51 24-76 82-138 (1169)
359 KOG1143 Predicted translation 96.7 0.0022 4.7E-08 68.3 5.0 68 149-231 250-319 (591)
360 KOG2484 GTPase [General functi 96.6 0.002 4.3E-08 69.5 4.3 31 48-78 253-283 (435)
361 COG0050 TufB GTPases - transla 96.6 0.01 2.3E-07 61.7 9.2 129 49-230 14-143 (394)
362 KOG2485 Conserved ATP/GTP bind 96.6 0.0049 1.1E-07 64.7 7.0 25 46-70 142-166 (335)
363 PRK10463 hydrogenase nickel in 96.4 0.011 2.4E-07 62.5 8.4 26 45-70 102-127 (290)
364 KOG0076 GTP-binding ADP-ribosy 96.4 0.0056 1.2E-07 59.0 5.6 69 149-230 70-141 (197)
365 COG0541 Ffh Signal recognition 96.4 0.012 2.7E-07 64.6 8.9 76 148-235 183-259 (451)
366 KOG1487 GTP-binding protein DR 96.3 0.0029 6.2E-08 64.6 3.2 28 49-77 61-88 (358)
367 PRK01889 GTPase RsgA; Reviewed 96.2 0.0082 1.8E-07 65.8 6.7 24 49-72 197-220 (356)
368 KOG0461 Selenocysteine-specifi 96.1 0.078 1.7E-06 56.4 12.8 68 148-234 70-141 (522)
369 COG0481 LepA Membrane GTPase L 96.1 0.019 4.2E-07 63.3 8.7 132 48-230 10-143 (603)
370 cd01859 MJ1464 MJ1464. This f 96.1 0.019 4E-07 54.9 7.8 54 174-229 2-55 (156)
371 KOG4181 Uncharacterized conser 96.1 0.062 1.4E-06 57.1 11.9 27 45-71 186-212 (491)
372 KOG0458 Elongation factor 1 al 96.1 0.006 1.3E-07 68.7 4.8 87 131-234 239-334 (603)
373 KOG0393 Ras-related small GTPa 96.0 0.006 1.3E-07 60.7 3.8 28 49-77 6-33 (198)
374 COG2895 CysN GTPases - Sulfate 96.0 0.029 6.3E-07 59.9 9.0 151 46-234 5-158 (431)
375 KOG0077 Vesicle coat complex C 96.0 0.062 1.3E-06 51.6 10.1 129 31-232 6-138 (193)
376 COG5257 GCD11 Translation init 95.9 0.078 1.7E-06 56.0 11.3 42 49-92 12-53 (415)
377 KOG2423 Nucleolar GTPase [Gene 95.8 0.013 2.8E-07 63.1 5.6 28 45-72 303-332 (572)
378 KOG0780 Signal recognition par 95.7 0.038 8.1E-07 59.7 8.2 75 148-235 184-260 (483)
379 KOG2203 GTP-binding protein [G 95.5 0.016 3.5E-07 64.6 5.1 36 37-72 26-62 (772)
380 cd03222 ABC_RNaseL_inhibitor T 95.3 0.23 4.9E-06 49.0 12.1 23 49-71 27-49 (177)
381 COG5258 GTPBP1 GTPase [General 95.3 0.024 5.2E-07 61.0 5.3 66 150-230 203-270 (527)
382 KOG0464 Elongation factor G [T 95.2 0.0088 1.9E-07 64.4 1.6 132 49-231 39-170 (753)
383 COG3840 ThiQ ABC-type thiamine 94.8 0.025 5.3E-07 55.4 3.4 28 49-77 27-54 (231)
384 cd01858 NGP_1 NGP-1. Autoanti 94.8 0.06 1.3E-06 51.6 6.1 50 179-230 3-54 (157)
385 PF05879 RHD3: Root hair defec 94.6 0.045 9.7E-07 65.6 5.6 24 53-77 1-24 (742)
386 PF13555 AAA_29: P-loop contai 94.6 0.036 7.8E-07 44.7 3.3 20 49-68 25-44 (62)
387 KOG0072 GTP-binding ADP-ribosy 94.6 0.26 5.7E-06 46.3 9.3 70 148-230 62-134 (182)
388 COG1136 SalX ABC-type antimicr 94.5 0.033 7.1E-07 56.8 3.6 56 172-228 148-205 (226)
389 TIGR02475 CobW cobalamin biosy 94.4 0.35 7.5E-06 52.8 11.7 25 46-70 3-27 (341)
390 cd00071 GMPK Guanosine monopho 94.3 0.039 8.3E-07 52.0 3.5 21 50-70 2-22 (137)
391 KOG0467 Translation elongation 94.3 0.086 1.9E-06 61.3 6.8 130 46-228 8-137 (887)
392 PF00005 ABC_tran: ABC transpo 94.3 0.034 7.4E-07 51.7 3.0 23 49-71 13-35 (137)
393 cd01855 YqeH YqeH. YqeH is an 94.2 0.16 3.5E-06 50.2 7.9 54 173-230 23-76 (190)
394 PRK11537 putative GTP-binding 94.2 0.3 6.6E-06 52.7 10.5 25 46-70 3-27 (318)
395 cd01849 YlqF_related_GTPase Yl 94.2 0.16 3.5E-06 48.5 7.6 42 188-230 2-44 (155)
396 COG1101 PhnK ABC-type uncharac 94.2 0.039 8.5E-07 55.4 3.2 27 49-76 34-60 (263)
397 COG0552 FtsY Signal recognitio 94.1 0.061 1.3E-06 57.5 4.8 78 148-233 222-302 (340)
398 COG1341 Predicted GTPase or GT 94.0 0.15 3.2E-06 55.9 7.5 26 45-70 71-96 (398)
399 COG4619 ABC-type uncharacteriz 94.0 0.42 9E-06 46.5 9.6 41 148-194 152-192 (223)
400 TIGR03499 FlhF flagellar biosy 93.8 0.088 1.9E-06 55.9 5.4 22 49-70 196-217 (282)
401 PF13521 AAA_28: AAA domain; P 93.7 0.041 8.9E-07 53.0 2.4 22 49-70 1-22 (163)
402 COG1116 TauB ABC-type nitrate/ 93.7 0.051 1.1E-06 55.9 3.1 23 49-71 31-53 (248)
403 cd01856 YlqF YlqF. Proteins o 93.6 0.27 5.8E-06 47.9 8.0 53 173-229 8-60 (171)
404 PRK13695 putative NTPase; Prov 93.6 0.85 1.9E-05 44.4 11.6 22 49-70 2-23 (174)
405 PF02263 GBP: Guanylate-bindin 93.6 0.17 3.7E-06 53.0 7.0 24 47-70 21-44 (260)
406 TIGR03263 guanyl_kin guanylate 93.5 0.07 1.5E-06 52.1 3.8 22 49-70 3-24 (180)
407 COG3640 CooC CO dehydrogenase 93.5 0.42 9.2E-06 48.7 9.3 69 181-258 152-222 (255)
408 cd01130 VirB11-like_ATPase Typ 93.5 0.061 1.3E-06 53.2 3.4 22 49-70 27-48 (186)
409 PF03205 MobB: Molybdopterin g 93.5 0.062 1.3E-06 50.9 3.1 23 48-70 1-23 (140)
410 cd01857 HSR1_MMR1 HSR1/MMR1. 93.4 0.1 2.2E-06 49.0 4.6 52 177-230 4-57 (141)
411 COG0194 Gmk Guanylate kinase [ 93.4 0.051 1.1E-06 53.4 2.5 35 50-84 7-41 (191)
412 TIGR03596 GTPase_YlqF ribosome 93.4 0.34 7.4E-06 51.2 8.9 51 176-230 13-63 (276)
413 COG4107 PhnK ABC-type phosphon 93.3 0.074 1.6E-06 51.7 3.3 29 49-79 34-62 (258)
414 cd03225 ABC_cobalt_CbiO_domain 93.2 0.078 1.7E-06 53.3 3.6 23 49-71 29-51 (211)
415 PRK00300 gmk guanylate kinase; 93.2 0.074 1.6E-06 53.2 3.4 36 49-84 7-43 (205)
416 KOG2749 mRNA cleavage and poly 93.2 0.74 1.6E-05 49.6 10.8 39 32-70 85-126 (415)
417 cd03261 ABC_Org_Solvent_Resist 93.1 0.08 1.7E-06 54.3 3.5 23 49-71 28-50 (235)
418 COG4559 ABC-type hemin transpo 93.1 0.085 1.8E-06 53.0 3.4 27 49-76 29-55 (259)
419 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.0 0.083 1.8E-06 53.4 3.5 22 49-70 32-53 (218)
420 KOG0463 GTP-binding protein GP 92.9 0.21 4.6E-06 53.6 6.3 76 140-230 211-288 (641)
421 PF06858 NOG1: Nucleolar GTP-b 92.8 0.18 3.9E-06 39.9 4.3 49 178-226 6-58 (58)
422 PRK14737 gmk guanylate kinase; 92.7 0.12 2.5E-06 51.5 4.0 22 49-70 6-27 (186)
423 cd03224 ABC_TM1139_LivF_branch 92.6 0.1 2.2E-06 52.9 3.6 23 49-71 28-50 (222)
424 cd03280 ABC_MutS2 MutS2 homolo 92.6 1.7 3.7E-05 43.4 12.3 20 49-68 30-49 (200)
425 cd03218 ABC_YhbG The ABC trans 92.6 0.11 2.4E-06 53.0 3.8 23 49-71 28-50 (232)
426 PRK13541 cytochrome c biogenes 92.6 0.11 2.4E-06 51.6 3.8 23 49-71 28-50 (195)
427 COG0410 LivF ABC-type branched 92.6 0.11 2.3E-06 52.9 3.5 23 49-71 31-53 (237)
428 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.6 0.095 2E-06 49.7 3.0 23 49-71 28-50 (144)
429 TIGR01166 cbiO cobalt transpor 92.5 0.095 2.1E-06 51.9 3.1 23 49-71 20-42 (190)
430 PRK13851 type IV secretion sys 92.5 0.1 2.2E-06 56.9 3.5 30 48-79 163-192 (344)
431 cd03215 ABC_Carb_Monos_II This 92.5 0.12 2.7E-06 50.8 3.8 23 49-71 28-50 (182)
432 TIGR01360 aden_kin_iso1 adenyl 92.5 0.1 2.2E-06 51.2 3.2 23 46-68 2-24 (188)
433 PRK11629 lolD lipoprotein tran 92.5 0.11 2.3E-06 53.3 3.5 23 49-71 37-59 (233)
434 cd03258 ABC_MetN_methionine_tr 92.4 0.12 2.7E-06 52.8 3.9 23 49-71 33-55 (233)
435 COG0523 Putative GTPases (G3E 92.4 0.6 1.3E-05 50.5 9.2 25 47-71 1-25 (323)
436 KOG0083 GTPase Rab26/Rab37, sm 92.4 0.12 2.5E-06 47.7 3.1 69 149-230 48-118 (192)
437 PRK09563 rbgA GTPase YlqF; Rev 92.4 0.52 1.1E-05 50.1 8.7 52 175-230 15-66 (287)
438 TIGR00960 3a0501s02 Type II (G 92.3 0.1 2.2E-06 52.7 3.1 24 48-71 30-53 (216)
439 COG1135 AbcC ABC-type metal io 92.3 0.75 1.6E-05 48.9 9.4 90 150-251 126-221 (339)
440 cd03264 ABC_drug_resistance_li 92.3 0.11 2.3E-06 52.4 3.1 22 49-70 27-48 (211)
441 TIGR02673 FtsE cell division A 92.3 0.11 2.3E-06 52.5 3.1 23 49-71 30-52 (214)
442 cd03238 ABC_UvrA The excision 92.2 0.11 2.4E-06 51.1 3.1 21 49-69 23-43 (176)
443 cd03265 ABC_DrrA DrrA is the A 92.2 0.11 2.3E-06 52.7 3.1 22 49-70 28-49 (220)
444 cd03254 ABCC_Glucan_exporter_l 92.2 0.14 2.9E-06 52.3 3.8 23 49-71 31-53 (229)
445 COG1120 FepC ABC-type cobalami 92.2 0.13 2.9E-06 53.5 3.7 22 49-70 30-51 (258)
446 cd03263 ABC_subfamily_A The AB 92.2 0.11 2.4E-06 52.6 3.1 23 49-71 30-52 (220)
447 cd03269 ABC_putative_ATPase Th 92.2 0.11 2.4E-06 52.2 3.1 23 49-71 28-50 (210)
448 cd03226 ABC_cobalt_CbiO_domain 92.1 0.11 2.4E-06 52.0 3.1 23 49-71 28-50 (205)
449 cd03249 ABC_MTABC3_MDL1_MDL2 M 92.1 0.13 2.8E-06 52.8 3.5 23 49-71 31-53 (238)
450 cd03243 ABC_MutS_homologs The 92.1 2.7 5.9E-05 42.0 13.0 23 49-71 31-53 (202)
451 TIGR03608 L_ocin_972_ABC putat 92.0 0.13 2.7E-06 51.6 3.3 23 49-71 26-48 (206)
452 TIGR01978 sufC FeS assembly AT 92.0 0.14 3.1E-06 52.6 3.8 22 49-70 28-49 (243)
453 cd03232 ABC_PDR_domain2 The pl 92.0 0.14 3.1E-06 50.8 3.7 23 49-71 35-57 (192)
454 PRK13540 cytochrome c biogenes 92.0 0.15 3.3E-06 51.0 3.8 24 48-71 28-51 (200)
455 cd00267 ABC_ATPase ABC (ATP-bi 92.0 0.16 3.4E-06 48.6 3.8 29 48-78 26-54 (157)
456 PRK13543 cytochrome c biogenes 92.0 0.15 3.2E-06 51.7 3.7 28 49-78 39-66 (214)
457 cd03293 ABC_NrtD_SsuB_transpor 92.0 0.12 2.6E-06 52.4 3.1 23 49-71 32-54 (220)
458 TIGR02315 ABC_phnC phosphonate 92.0 0.12 2.6E-06 53.2 3.1 23 49-71 30-52 (243)
459 PRK14250 phosphate ABC transpo 92.0 0.14 3E-06 52.8 3.6 22 49-70 31-52 (241)
460 cd03259 ABC_Carb_Solutes_like 91.9 0.12 2.7E-06 52.0 3.1 23 49-71 28-50 (213)
461 COG1126 GlnQ ABC-type polar am 91.9 0.16 3.5E-06 51.2 3.8 74 173-254 143-218 (240)
462 cd03216 ABC_Carb_Monos_I This 91.9 0.14 2.9E-06 49.6 3.2 24 48-71 27-50 (163)
463 cd03260 ABC_PstB_phosphate_tra 91.9 0.12 2.6E-06 52.7 3.0 23 49-71 28-50 (227)
464 cd03292 ABC_FtsE_transporter F 91.9 0.12 2.7E-06 51.9 3.1 22 49-70 29-50 (214)
465 cd03217 ABC_FeS_Assembly ABC-t 91.9 0.17 3.6E-06 50.7 3.9 23 49-71 28-50 (200)
466 PRK10078 ribose 1,5-bisphospho 91.8 0.13 2.8E-06 50.8 3.1 23 49-71 4-26 (186)
467 cd03369 ABCC_NFT1 Domain 2 of 91.8 0.15 3.2E-06 51.2 3.5 28 49-78 36-63 (207)
468 cd03266 ABC_NatA_sodium_export 91.8 0.13 2.8E-06 52.0 3.1 23 49-71 33-55 (218)
469 PF13191 AAA_16: AAA ATPase do 91.8 0.18 3.8E-06 49.1 4.0 40 28-70 8-47 (185)
470 cd03298 ABC_ThiQ_thiamine_tran 91.8 0.16 3.5E-06 51.0 3.8 23 49-71 26-48 (211)
471 COG3910 Predicted ATPase [Gene 91.8 0.18 3.9E-06 49.7 3.8 44 27-77 24-68 (233)
472 cd01983 Fer4_NifH The Fer4_Nif 91.8 0.73 1.6E-05 39.1 7.4 21 50-70 2-22 (99)
473 COG1121 ZnuC ABC-type Mn/Zn tr 91.8 0.13 2.8E-06 53.4 3.1 22 49-70 32-53 (254)
474 cd03262 ABC_HisP_GlnQ_permease 91.8 0.13 2.8E-06 51.7 3.1 23 49-71 28-50 (213)
475 PRK10895 lipopolysaccharide AB 91.8 0.16 3.5E-06 52.2 3.8 23 49-71 31-53 (241)
476 KOG0460 Mitochondrial translat 91.8 0.49 1.1E-05 50.5 7.3 134 46-232 51-187 (449)
477 TIGR02211 LolD_lipo_ex lipopro 91.7 0.14 3E-06 51.9 3.2 23 49-71 33-55 (221)
478 cd03229 ABC_Class3 This class 91.7 0.15 3.2E-06 50.0 3.3 22 49-70 28-49 (178)
479 PF13207 AAA_17: AAA domain; P 91.7 0.15 3.2E-06 46.2 3.1 22 49-70 1-22 (121)
480 PRK13651 cobalt transporter AT 91.7 0.16 3.4E-06 54.5 3.8 23 49-71 35-57 (305)
481 TIGR01189 ccmA heme ABC export 91.7 0.15 3.2E-06 50.9 3.3 24 48-71 27-50 (198)
482 PRK15177 Vi polysaccharide exp 91.7 0.14 2.9E-06 52.0 3.1 29 49-79 15-43 (213)
483 PRK15112 antimicrobial peptide 91.6 0.17 3.6E-06 53.1 3.8 23 49-71 41-63 (267)
484 COG3839 MalK ABC-type sugar tr 91.6 0.14 3.1E-06 55.4 3.3 23 49-71 31-53 (338)
485 cd03253 ABCC_ATM1_transporter 91.6 0.16 3.4E-06 52.1 3.6 23 49-71 29-51 (236)
486 cd03236 ABC_RNaseL_inhibitor_d 91.6 0.15 3.1E-06 53.4 3.3 29 49-79 28-56 (255)
487 PRK13539 cytochrome c biogenes 91.6 0.18 3.9E-06 50.7 3.9 23 49-71 30-52 (207)
488 PRK13641 cbiO cobalt transport 91.6 0.16 3.4E-06 54.0 3.6 28 49-78 35-62 (287)
489 cd03295 ABC_OpuCA_Osmoprotecti 91.6 0.16 3.5E-06 52.3 3.6 23 49-71 29-51 (242)
490 PRK13538 cytochrome c biogenes 91.6 0.18 3.9E-06 50.5 3.9 23 49-71 29-51 (204)
491 cd03251 ABCC_MsbA MsbA is an e 91.6 0.16 3.5E-06 51.9 3.5 23 49-71 30-52 (234)
492 cd03268 ABC_BcrA_bacitracin_re 91.6 0.14 3.1E-06 51.3 3.1 23 49-71 28-50 (208)
493 TIGR02324 CP_lyasePhnL phospho 91.6 0.17 3.6E-06 51.5 3.7 23 49-71 36-58 (224)
494 CHL00131 ycf16 sulfate ABC tra 91.6 0.16 3.6E-06 52.5 3.7 22 49-70 35-56 (252)
495 cd03256 ABC_PhnC_transporter A 91.6 0.14 3E-06 52.6 3.1 23 49-71 29-51 (241)
496 TIGR03410 urea_trans_UrtE urea 91.6 0.18 3.8E-06 51.5 3.8 23 49-71 28-50 (230)
497 cd03257 ABC_NikE_OppD_transpor 91.5 0.14 3E-06 52.0 3.1 23 49-71 33-55 (228)
498 cd03245 ABCC_bacteriocin_expor 91.5 0.17 3.7E-06 51.2 3.6 23 49-71 32-54 (220)
499 cd03273 ABC_SMC2_euk Eukaryoti 91.5 0.15 3.4E-06 52.9 3.4 26 45-70 23-48 (251)
500 cd03230 ABC_DR_subfamily_A Thi 91.5 0.15 3.3E-06 49.7 3.1 23 49-71 28-50 (173)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=2e-103 Score=897.27 Aligned_cols=602 Identities=41% Similarity=0.598 Sum_probs=543.4
Q ss_pred CCCCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCC-ccc
Q 005389 20 PLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTD-EEY 98 (699)
Q Consensus 20 ~~~~~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~-~~~ 98 (699)
.+++.+++++|++||.+..+|.+..+.+|+|+|||+||+||||+||+|+|++|||||.|+|||||++++|.+.... .+|
T Consensus 2 ~~~~~li~~vn~lqd~~~~l~~~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~ 81 (657)
T KOG0446|consen 2 GLMRLLIPLSNPLQDKLEILGSSSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEE 81 (657)
T ss_pred chhhhccccchHHHHHHHHhcCCCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccc
Confidence 3678899999999999999997778999999999999999999999999999999999999999999999988654 799
Q ss_pred ceee-cCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHH
Q 005389 99 GEFL-HLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTM 177 (699)
Q Consensus 99 ~~~~-~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~l 177 (699)
++|. |.++++++||++++++|..+|++..|.++++|+.+|.++|++|+++++|+||+||++++++++||.|++.++++|
T Consensus 82 ~~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~m 161 (657)
T KOG0446|consen 82 ASFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSM 161 (657)
T ss_pred hhccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHH
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCcccHHHHhcCCccccccCEEEEEcCCh
Q 005389 178 IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQ 257 (699)
Q Consensus 178 v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~ 257 (699)
++.|+..++++||+|++||.|+++++++++++++||.|.|||+|+||+|+|++|+++.++|.|+.+++++||++|+||+|
T Consensus 162 i~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~g~v~vvnR~q 241 (657)
T KOG0446|consen 162 IEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKVGYVGVVNRSQ 241 (657)
T ss_pred HHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCccccccceeeeeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccHHHHHHHHHHhcCCCCcccCccccCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCCCCC
Q 005389 258 EDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITE 337 (699)
Q Consensus 258 ~d~~~~~s~~~~~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~ 337 (699)
+++..++++.+++.+|..||.+||.|+.+.+++|+++|.+.|+.+|..||++++|.|+..|+.++.+++++|..||. ..
T Consensus 242 ~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el~~~g~-~~ 320 (657)
T KOG0446|consen 242 SIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQDELNRIGA-VD 320 (657)
T ss_pred hhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcc-cC
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999997 33
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhcccCCcccccccccccccchhHHhHHHHHHhhhccCCCCCCchHHHHHHHHhhcCCCC
Q 005389 338 SKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKS 417 (699)
Q Consensus 338 ~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~f~~~l~~~~~~~~l~~~~I~~~i~n~~G~~~ 417 (699)
........++.+++.|+..|...++|..+..++.+++||||++|+|++.|...+..++|...+...+|+++++|++|+++
T Consensus 321 ~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i~~~~G~~~ 400 (657)
T KOG0446|consen 321 VDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLVSEASGIRP 400 (657)
T ss_pred CccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHHHhccCCCc
Confidence 34445778999999999999999999988766889999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhhhh-cccCchhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005389 418 ALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVN-ELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHI 496 (699)
Q Consensus 418 ~lfvp~~~fe~Lvk~~i~~l~~Psl~c~~~V~~eL~~i~~~~~~~-~~~rfp~L~~~i~~vv~~~l~e~~~~a~~~v~~l 496 (699)
++|+|+.+||.+|++||+.+++|+++||+.|+++|++++++|... ++.|||.|+..+.+++.+++++++.+++++|.++
T Consensus 401 ~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~~l~rfp~l~~~~~~~~~~~~~~~~~~t~~~v~~~ 480 (657)
T KOG0446|consen 401 SLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRATELKRFPVLYSELVEIASSLIAEGLDETKKAVKNL 480 (657)
T ss_pred cccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999976 8999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCCCCCchH-HHHHHHHhhhccCCCCCcccCCCCCCCCCCCCcccchhhhHhHhhhccccccCCCCCCc
Q 005389 497 IEMEMDYINTSHPNFIGGSK-AVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGVRPT 575 (699)
Q Consensus 497 i~~E~~yinT~hpdF~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (699)
|+||.+||||.||||.+++. |+........ + ..+ ... +.
T Consensus 481 i~~e~~yinT~h~df~~~~~~al~~~~~~~~--~-------------------~~~-------------~~~------~~ 520 (657)
T KOG0446|consen 481 IDLEQSYLNTDHPDFRSLTDSALSSVTSPSI--A-------------------AMK-------------LIS------AQ 520 (657)
T ss_pred HHHHHHHhcCcChhhhhhHHHHHHHhhcccc--c-------------------ccc-------------ccc------cc
Confidence 99999999999999999986 6554432100 0 000 000 00
Q ss_pred ccccccCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCccchhhHHhhhhcCCCCcccCCCCCCChhhHHHHH
Q 005389 576 VEVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSEQENVEIA 655 (699)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~rE~~e~e 655 (699)
... .......++++ .+++. + ..+.+..++..+.....++++|..+++
T Consensus 521 -~~~---~~~~~~~~~~~--~~~~~---------~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (657)
T KOG0446|consen 521 -LLK---EELGECNSALK--AIKNA---------V------------------GSIRLDPSDIVLSRALVLKKRECKETE 567 (657)
T ss_pred -ccc---cccccccchhh--hhcch---------h------------------hhhhhcccchhhhhhhhcchhhhHHHH
Confidence 000 00000011111 11110 0 012444455566666788999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHh
Q 005389 656 VTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNPELYYFLLI 695 (699)
Q Consensus 656 ~Ir~LI~SYF~IVRk~I~D~VPKAIMhfLVN~~~~~~~~~ 695 (699)
.|++++.|||+||+|+|.|+|||||||+|||++|++|..|
T Consensus 568 ~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~ 607 (657)
T KOG0446|consen 568 EISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNE 607 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876
No 2
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=9.6e-58 Score=484.55 Aligned_cols=287 Identities=46% Similarity=0.775 Sum_probs=254.2
Q ss_pred HHHhcCCccccccCEEEEEcCChhhhhccccHHHHHHHHHHhcCCCCcccCccccCCcchHHHHHHHHHHHHHHhhhhhH
Q 005389 235 RNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGL 314 (699)
Q Consensus 235 ~~~l~~~~~~l~lG~~~V~nrs~~d~~~~~s~~~~~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~i~~~LP~l 314 (699)
.++|.|+++||++||++|+||+|+|++.+.++.+++..|.+||.+||+|+...++|||++|+.+|+++|.+||+++||.|
T Consensus 2 ~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~l 81 (295)
T PF01031_consen 2 MDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPSL 81 (295)
T ss_dssp HHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcHH
Confidence 57899999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHHHHHHHHhhcccCCcc-cccccccccccchhHHhHHHHHHhhh
Q 005389 315 KSRISSALVSVAKEHASYGEITE-SKAGQGALLLNILSKYSEAFSSMVEGKNE-EMSTSELSGGARIHYIFQSIFVKSLE 392 (699)
Q Consensus 315 ~~~i~~~l~~~~~eL~~lg~~~~-~~~~~~~~ll~~~~~f~~~~~~~i~G~~~-~~~~~~l~ggari~~~f~~~f~~~l~ 392 (699)
+.+|+.+|.+++.+|.+||++++ +..+++.+|++++++|++.++++|+|.|. ++...++.||+||+++|++.|...+.
T Consensus 82 ~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~~ 161 (295)
T PF01031_consen 82 KSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFLE 161 (295)
T ss_dssp HHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhhh
Confidence 99999999999999999999988 88889999999999999999999999998 57888999999999999999999999
Q ss_pred ccCCCCCCchHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhhhhcccCchhHHH
Q 005389 393 EVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRK 472 (699)
Q Consensus 393 ~~~~~~~l~~~~I~~~i~n~~G~~~~lfvp~~~fe~Lvk~~i~~l~~Psl~c~~~V~~eL~~i~~~~~~~~~~rfp~L~~ 472 (699)
.++|+.++++++|+++|++++|+++|+|+|+.+|+.||++||++|++||++|++.|+++|.+++.+|+.++|.+||.|++
T Consensus 162 ~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~~ 241 (295)
T PF01031_consen 162 KIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEKEFERFPNLKE 241 (295)
T ss_dssp HTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHHH
T ss_pred hhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhcCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHH
Q 005389 473 RMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNFIGGSKAVEIA 521 (699)
Q Consensus 473 ~i~~vv~~~l~e~~~~a~~~v~~li~~E~~yinT~hpdF~~~~~a~~~~ 521 (699)
++.+++.++++++..+|+++|++||+||++||||+||||.++..++...
T Consensus 242 ~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T~~~~f~~~~~~~~~~ 290 (295)
T PF01031_consen 242 AIKEAVQQLLEECREPAKEMIENLIDMELSYINTQHPDFLGELQAIRQE 290 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTSTT--TTS------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877653
No 3
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=1.2e-46 Score=384.04 Aligned_cols=239 Identities=63% Similarity=1.024 Sum_probs=227.1
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCccccee
Q 005389 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEF 101 (699)
Q Consensus 22 ~~~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~ 101 (699)
|+.|++++|+|++++..+|++..+++|+|+|||++|+|||||||+|+|..++|++.|.|||||+++++++. ..+|+++
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~--~~~~~~~ 78 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINS--STEYAEF 78 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCC--CCcceEE
Confidence 57899999999999878999989999999999999999999999999999999999999999999999875 4589999
Q ss_pred ecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 005389 102 LHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSY 181 (699)
Q Consensus 102 ~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~y 181 (699)
.+.+++.+.|+++++++|+.++++..+.+++||.++++++|++|++++++||||||+...+..+|+.++...+++++..|
T Consensus 79 ~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~y 158 (240)
T smart00053 79 LHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQF 158 (240)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987777777788889999999999
Q ss_pred hcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCcccHHHHhcCCccccccCEEEEEcCChhhhh
Q 005389 182 IKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (699)
Q Consensus 182 i~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (699)
++++++|||+|++|+.|+.+++++++++++++.+.||++|+||+|.+++++++.+++.|+.++|++|||+|+||+|+|++
T Consensus 159 i~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~v~nr~~~d~~ 238 (240)
T smart00053 159 ISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIGVVNRSQKDIE 238 (240)
T ss_pred HhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEEEECCChHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred c
Q 005389 262 F 262 (699)
Q Consensus 262 ~ 262 (699)
.
T Consensus 239 ~ 239 (240)
T smart00053 239 G 239 (240)
T ss_pred c
Confidence 4
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=100.00 E-value=1e-33 Score=301.84 Aligned_cols=421 Identities=23% Similarity=0.386 Sum_probs=294.1
Q ss_pred CCCchHHHHHHHHHHHHHhCCC--CCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCC-ccccceEEEEeeccCCCcc
Q 005389 21 LGGSVIPLVNKLQDIFAQLGSQ--STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEE 97 (699)
Q Consensus 21 ~~~~l~~~~~~L~d~~~~lg~~--~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~ 97 (699)
+..+||+++..+.|+++....+ ..-.||+|||||+|||||+|+|+.+....++|||+| ..||.|+.+.+...+. .
T Consensus 280 lKkSLIDMYSEVLD~Ls~YD~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPy--H 357 (980)
T KOG0447|consen 280 LKKSLIDMYSEVLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPH--H 357 (980)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcc--h
Confidence 5667899999999988876544 334799999999999999999999999999999998 5899999999876653 1
Q ss_pred cceeecCC----CccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHH
Q 005389 98 YGEFLHLP----GKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEAR 173 (699)
Q Consensus 98 ~~~~~~~~----g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~ 173 (699)
.+.|.... -.+..|+.++|.+++-.+......++.+|+++|.+.+.||+.+.++|||+||++++-+.+...|..+.
T Consensus 358 VAqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~ 437 (980)
T KOG0447|consen 358 VALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKET 437 (980)
T ss_pred hhhhccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHH
Confidence 12221111 12356788899999988888888889999999999999999999999999999988666666666778
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCc----ccHHHHhcCCccccc-cC
Q 005389 174 IRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG----TDARNLLLGKVIPLR-LG 248 (699)
Q Consensus 174 i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~----~~~~~~l~~~~~~l~-lG 248 (699)
|-.|...|+.+|++||||+-++..|...+..-.+...+||.|.|||+|+||+|+.++. .....+++|+.+|++ +|
T Consensus 438 I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALG 517 (980)
T KOG0447|consen 438 IFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALG 517 (980)
T ss_pred HHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcc
Confidence 8899999999999999999999999999998999999999999999999999998652 245789999999997 89
Q ss_pred EEEEEc-CChhhhhccccHHHHHHHHHHhcCCCCcccC--c-cccCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 005389 249 YVGVVN-RSQEDIMFNRSIKDALVAEEKFFRSRPVYNG--L-ADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVS 324 (699)
Q Consensus 249 ~~~V~n-rs~~d~~~~~s~~~~~~~E~~fF~~~~~~~~--~-~~~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~ 324 (699)
|++|+. |+.. ..||++.++.|+.||.+...+.. + ++.+-+.+|.-..+.-+...+++++..-........-.
T Consensus 518 YfaVVTGrGns----sdSIdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQaDaFkAtrFN 593 (980)
T KOG0447|consen 518 YFAVVTGKGNS----SESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQADSFKATRFN 593 (980)
T ss_pred eeEEEecCCCc----chhHHHHHHHHHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999875 3322 34789999999999998766532 2 45677888888888888888877766554444444444
Q ss_pred HHHHHHH-hCCCCCChh------hHHHHHHHHHHHHHHHHhhcccCCcccccccccccccch-hHHhHHHHHHhhhccCC
Q 005389 325 VAKEHAS-YGEITESKA------GQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARI-HYIFQSIFVKSLEEVDP 396 (699)
Q Consensus 325 ~~~eL~~-lg~~~~~~~------~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~~l~ggari-~~~f~~~f~~~l~~~~~ 396 (699)
++.|-.. ++.-++... .+...|-..++ . .+.-.-.++++-.+.++ .|| ..+|+..+..+...++.
T Consensus 594 LEtEWKNnfpRlRel~RdELfdKAkgEILDEvi~-l----sqv~~k~w~e~l~~~~~--e~vs~~~~~~~~lpaA~~~~s 666 (980)
T KOG0447|consen 594 LETEWKNNYPRLRELDRNELFEKAKNEILDEVIS-L----SQVTPKHWEEILQQSLW--ERVSTHVIENIYLPAAQTMNS 666 (980)
T ss_pred hhhhhhhcChHhhhcChHHHHHHhhhhHHHHHHh-h----hhcChhhHHHHHHHHHH--HHhhhhhhhhccchhhhcccc
Confidence 4444332 111111100 11222222221 1 11111111111000000 011 01222333333223332
Q ss_pred CCCCchHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Q 005389 397 CEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKIS 456 (699)
Q Consensus 397 ~~~l~~~~I~~~i~n~~G~~~~lfvp~~~fe~Lvk~~i~~l~~Psl~c~~~V~~eL~~i~ 456 (699)
-.-.+.-||+ +.......++.-.-+.+|+.|-......+.+|+-.-.+.|++.|...+
T Consensus 667 g~FnttvdIk--lk~w~DKqL~~k~ve~~w~tl~e~f~r~~~~~~~k~hd~ifd~lkeav 724 (980)
T KOG0447|consen 667 GTFNTTVDIK--LKQWTDKQLPNKAVEVAWETLQEEFSRFMTEPKGKEHDDIFDKLKEAV 724 (980)
T ss_pred cccceeehhh--hhhhhhhhcchhhhHHHHHHHHHHHHHHhccccccccchHHHHHHHHH
Confidence 2223344443 223333344444558999999999999999999888888888887765
No 5
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.88 E-value=4.2e-22 Score=193.39 Aligned_cols=166 Identities=33% Similarity=0.459 Sum_probs=134.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcc--cceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEE--YGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~--~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
|+|+|.+|||||||||+|+|.+++|++.++||++|+.+.+........ +..........+.++.++++.+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 799999999999999999999999999999999999999876654221 111111124457889999999988887777
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (699)
+....++...+.+....+...+++||||||+.+... ...+++.+|+..++ ++|+|++++.++.+.+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~---------~~~~~~~~~~~~~d-~vi~V~~~~~~~~~~~~~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNS---------EHTEITEEYLPKAD-VVIFVVDANQDLTESDMEFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHT---------TTSHHHHHHHSTTE-EEEEEEETTSTGGGHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchh---------hhHHHHHHhhccCC-EEEEEeccCcccchHHHHHH
Confidence 777788888999999999999999999999976422 22378889997665 89999999999999998999
Q ss_pred HHhhCCCCCcEEEeeccc
Q 005389 208 AGIADPDGYRTIGIITKL 225 (699)
Q Consensus 208 ~~~~dp~g~rti~VlTK~ 225 (699)
.+.+++...++|+|+||+
T Consensus 151 ~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEEEE-G
T ss_pred HHHhcCCCCeEEEEEcCC
Confidence 999999999999999995
No 6
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=1.4e-14 Score=141.71 Aligned_cols=127 Identities=24% Similarity=0.375 Sum_probs=94.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCcc--ccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHH
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC--TRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~--Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (699)
-++|.|+++|..|+|||||||+|+|+.-|.|-+..+ |+.+-..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff----------------------------------- 66 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFF----------------------------------- 66 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEE-----------------------------------
Confidence 378999999999999999999999987555544321 2211100
Q ss_pred hhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeE--EEEecCCCccc
Q 005389 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLI--LAVTPANSDLA 200 (699)
Q Consensus 123 t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iI--L~V~~a~~d~~ 200 (699)
++. ..+.|||+||+.-..+ +....+.+..++.+|+....++. +.++|+.+...
T Consensus 67 ------------------~~~----~~~~lVDlPGYGyAkv---~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~ 121 (200)
T COG0218 67 ------------------EVD----DELRLVDLPGYGYAKV---PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK 121 (200)
T ss_pred ------------------Eec----CcEEEEeCCCcccccC---CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc
Confidence 000 1388999999865532 35677899999999999643343 44678888887
Q ss_pred chHHHHHHHhhCCCCCcEEEeecccccCCCcc
Q 005389 201 NSDALQIAGIADPDGYRTIGIITKLDIMDRGT 232 (699)
Q Consensus 201 ~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~ 232 (699)
..| .++...+...+.++++|+||+|.+..+.
T Consensus 122 ~~D-~em~~~l~~~~i~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 122 DLD-REMIEFLLELGIPVIVVLTKADKLKKSE 152 (200)
T ss_pred HHH-HHHHHHHHHcCCCeEEEEEccccCChhH
Confidence 777 5888888888999999999999998654
No 7
>COG1159 Era GTPase [General function prediction only]
Probab=99.61 E-value=1.4e-14 Score=149.03 Aligned_cols=125 Identities=28% Similarity=0.321 Sum_probs=91.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
.|++||.+|+|||||+|+|+|.++.-++.- | +|++...-|.+.+
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k-----~------QTTR~~I~GI~t~------------------------- 51 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPK-----P------QTTRNRIRGIVTT------------------------- 51 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCC-----c------chhhhheeEEEEc-------------------------
Confidence 489999999999999999999998544443 3 3333222222211
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHH
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIA 208 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~ 208 (699)
+..++++|||||+.... ..+.+.+...+.+.+...| +||+|+++...+...| ..++
T Consensus 52 -----------------~~~QiIfvDTPGih~pk-----~~l~~~m~~~a~~sl~dvD-lilfvvd~~~~~~~~d-~~il 107 (298)
T COG1159 52 -----------------DNAQIIFVDTPGIHKPK-----HALGELMNKAARSALKDVD-LILFVVDADEGWGPGD-EFIL 107 (298)
T ss_pred -----------------CCceEEEEeCCCCCCcc-----hHHHHHHHHHHHHHhccCc-EEEEEEeccccCCccH-HHHH
Confidence 11379999999998763 4566778888888999998 9999999998777766 3455
Q ss_pred HhhCCCCCcEEEeecccccCCCccc
Q 005389 209 GIADPDGYRTIGIITKLDIMDRGTD 233 (699)
Q Consensus 209 ~~~dp~g~rti~VlTK~D~~~~~~~ 233 (699)
..+.....|.|+++||+|...+...
T Consensus 108 ~~lk~~~~pvil~iNKID~~~~~~~ 132 (298)
T COG1159 108 EQLKKTKTPVILVVNKIDKVKPKTV 132 (298)
T ss_pred HHHhhcCCCeEEEEEccccCCcHHH
Confidence 5555456899999999999987653
No 8
>PRK09866 hypothetical protein; Provisional
Probab=99.60 E-value=3.1e-13 Score=151.74 Aligned_cols=192 Identities=20% Similarity=0.238 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceee--
Q 005389 25 VIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFL-- 102 (699)
Q Consensus 25 l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~-- 102 (699)
+..-+..|+.-+..+...+ |.++|+|..|+|||||+|+|+|..++|.+...+|.+|+.+.+....+ +.....
T Consensus 51 i~~ri~~L~~~L~Kv~~~~----~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~pg~r--e~~L~~dt 124 (741)
T PRK09866 51 IAERHAMLNNELRKISRLE----MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQK--EPVLHFSH 124 (741)
T ss_pred HHHHHHHHHHHHHHHhccc----eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecCCcC--ceeeecCC
Confidence 3444455555444444222 99999999999999999999999999999999999999776543322 111110
Q ss_pred ----c-----CCCc--------------cccChhHHHHHHHHHh----------------------hhh---cCCCCCcc
Q 005389 103 ----H-----LPGK--------------RFYDFSEIRREIQAQT----------------------DKE---AGGNKGVS 134 (699)
Q Consensus 103 ----~-----~~g~--------------~~~d~~~i~~~i~~~t----------------------~~~---~~~~~~~s 134 (699)
. +|.. ...|..++...+.... .+. .+..-.|.
T Consensus 125 vgfI~~ll~~Lp~~Lv~~f~atl~e~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~~~l~~~~p~d 204 (741)
T PRK09866 125 VAPIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFS 204 (741)
T ss_pred ccchHHHHHHhhHHHHHhhhhHHHHHHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHHHhhcCCCcHH
Confidence 0 0000 0011222222111110 000 00011110
Q ss_pred c-------cceEEE---EecCC--ccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch
Q 005389 135 D-------KQIRLK---IFSPH--VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (699)
Q Consensus 135 ~-------~~i~l~---i~~p~--~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (699)
. -+|.++ +.++. ..+++||||||+.+... ..+..+..+.+..+| +||+|++++......
T Consensus 205 ~ya~~~~~p~iev~f~hl~g~l~~~~QIIFVDTPGIhk~~~--------~~L~k~M~eqL~eAD-vVLFVVDat~~~s~~ 275 (741)
T PRK09866 205 AYAAIEHIPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQ--------PHLQKMLNQQLARAS-AVLAVLDYTQLKSIS 275 (741)
T ss_pred HHhhhhcCceeeeeeeeccccccccCCEEEEECCCCCCccc--------hHHHHHHHHHHhhCC-EEEEEEeCCCCCChh
Confidence 0 112222 22222 25899999999985421 123344445788888 888888888765555
Q ss_pred HHHHHHHhhCCCC--CcEEEeecccccCCCcc
Q 005389 203 DALQIAGIADPDG--YRTIGIITKLDIMDRGT 232 (699)
Q Consensus 203 ~~l~l~~~~dp~g--~rti~VlTK~D~~~~~~ 232 (699)
+ ..+++.+...+ .++++|+||+|+.+...
T Consensus 276 D-eeIlk~Lkk~~K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 276 D-EEVREAILAVGQSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred H-HHHHHHHHhcCCCCCEEEEEEcccCCCccc
Confidence 5 45666666555 39999999999986443
No 9
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.58 E-value=1.8e-14 Score=155.96 Aligned_cols=124 Identities=26% Similarity=0.395 Sum_probs=100.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
|.|++||.+|+|||||+|.|+|+.. .++-.+.++|++..|+.....+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-----------AIV~D~pGvTRDr~y~~~~~~~---------------------- 50 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-----------AIVSDTPGVTRDRIYGDAEWLG---------------------- 50 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-----------eEeecCCCCccCCccceeEEcC----------------------
Confidence 8999999999999999999999874 4555555666666665432221
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (699)
..+.||||+|+.... +..+.+++++.++..+.++| +||+|+++...++..| ..+
T Consensus 51 --------------------~~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~Ai~eAD-vilfvVD~~~Git~~D-~~i 104 (444)
T COG1160 51 --------------------REFILIDTGGLDDGD----EDELQELIREQALIAIEEAD-VILFVVDGREGITPAD-EEI 104 (444)
T ss_pred --------------------ceEEEEECCCCCcCC----chHHHHHHHHHHHHHHHhCC-EEEEEEeCCCCCCHHH-HHH
Confidence 248999999998542 24688899999999999998 8888889999888877 788
Q ss_pred HHhhCCCCCcEEEeecccccCCC
Q 005389 208 AGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 208 ~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
++.+.+.++++|+|+||+|....
T Consensus 105 a~~Lr~~~kpviLvvNK~D~~~~ 127 (444)
T COG1160 105 AKILRRSKKPVILVVNKIDNLKA 127 (444)
T ss_pred HHHHHhcCCCEEEEEEcccCchh
Confidence 88888878999999999998743
No 10
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.56 E-value=3.4e-15 Score=130.55 Aligned_cols=47 Identities=36% Similarity=0.516 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHh
Q 005389 649 QENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNPELYYFLLI 695 (699)
Q Consensus 649 rE~~e~e~Ir~LI~SYF~IVRk~I~D~VPKAIMhfLVN~~~~~~~~~ 695 (699)
+|..|+++|++|+.|||+||||+|+|+|||||||||||++++++..+
T Consensus 1 ~e~~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~ 47 (92)
T smart00302 1 YEDSELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNE 47 (92)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999998764
No 11
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=99.55 E-value=7.4e-14 Score=160.50 Aligned_cols=377 Identities=28% Similarity=0.370 Sum_probs=309.9
Q ss_pred ccceeecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHH
Q 005389 97 EYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRT 176 (699)
Q Consensus 97 ~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~ 176 (699)
+|..+.+.+.....++..+..+....+....+...++...++.+.+..+....++.+|.||+...+...++.++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (546)
T COG0699 2 EEFEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDEL 81 (546)
T ss_pred CcchhcccchhhhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHH
Confidence 45566677777788999999999999998888999999999999999999999999999999999999999888877778
Q ss_pred HHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCcccHHHHhcCCccccccCEEEEEcCC
Q 005389 177 MIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRS 256 (699)
Q Consensus 177 lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs 256 (699)
+...++...+++|.....++.+..+......++..++ +.++.+.++.+...... +..|++.+.+..
T Consensus 82 ~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 147 (546)
T COG0699 82 LDLGKIEIENALILLGIAPNADEEAELSIEVIREADR-------VPTKINFLNGGTNLTLI-------LGNGDVLVVDAL 147 (546)
T ss_pred HHhhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc-------hhHHHHHHhcCCceeee-------eccccccccCch
Confidence 8889999999999999999999988888888887765 88888888776643211 677888889999
Q ss_pred hhhhhccccHHHHHHHHHHhcCCCCcccCccccCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCCCC
Q 005389 257 QEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEIT 336 (699)
Q Consensus 257 ~~d~~~~~s~~~~~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~ 336 (699)
+.++....+...+...+..+|..++.|.+....++.+++...++..+..|++...+...........+ .+++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~- 220 (546)
T COG0699 148 ETDIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN- 220 (546)
T ss_pred hHHHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch-
Confidence 99988888888888899999999999999888899999999999999999999888765544433332 22221
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhcccCCcccccccccccccchhHHhHHHHHHhhhccCCCCCCchHHHHHHHHhhcCCC
Q 005389 337 ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPK 416 (699)
Q Consensus 337 ~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~f~~~l~~~~~~~~l~~~~I~~~i~n~~G~~ 416 (699)
.++.....|...+. ++.+|+|++.. ...++++..+.+..+.....+..|.+
T Consensus 221 --------~~~~~~~~~~~~~~-------------~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~ 271 (546)
T COG0699 221 --------EVLAVIQTLLKRLS-------------ELVRGARIRLN--------IILFSDLEEVSDSPVLLKELASKGER 271 (546)
T ss_pred --------HHHHHHHHHHHHHH-------------HHhccchhhhh--------hcccchHHHhhhhhhHHHHHcccCCC
Confidence 44555556666555 23445666655 23344555666777888888999999
Q ss_pred CCCCCCchhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhh-hhcccCchhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005389 417 SALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCL-VNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGH 495 (699)
Q Consensus 417 ~~lfvp~~~fe~Lvk~~i~~l~~Psl~c~~~V~~eL~~i~~~~~-~~~~~rfp~L~~~i~~vv~~~l~e~~~~a~~~v~~ 495 (699)
+..|.....|..++..++..+..+..+|+..+.+++.+++.... ......||.+...+...+.++..+.....+..+..
T Consensus 272 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (546)
T COG0699 272 PSLLSGLTLLDTLVETPIGQFDTQINQLLRKLISELVRILLKELESASSSPFPKLSEALEEVVNQLKNKVDSGLESGLLA 351 (546)
T ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 88899999999999999999999988999999999999855544 34578999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCCCCchHHHHHHHH
Q 005389 496 IIEMEMDYINTSHPNFIGGSKAVEIALQ 523 (699)
Q Consensus 496 li~~E~~yinT~hpdF~~~~~a~~~~~~ 523 (699)
.++++..|++|.||+|.....+++....
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 379 (546)
T COG0699 352 IIDIEERYINTKHPLFLSLRQAAAILSK 379 (546)
T ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHHH
Confidence 9999999999999999998887776654
No 12
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.53 E-value=7.5e-13 Score=143.87 Aligned_cols=151 Identities=26% Similarity=0.358 Sum_probs=101.3
Q ss_pred CCCchHHHHHHHHHHHHHhCCCCCC-CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccc
Q 005389 21 LGGSVIPLVNKLQDIFAQLGSQSTI-ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYG 99 (699)
Q Consensus 21 ~~~~l~~~~~~L~d~~~~lg~~~~~-~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~ 99 (699)
+..++-.+...|.++++....+..+ +--.||++|.+|+|||||||+|+|++. .++..+.+|+++-..
T Consensus 190 i~~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~-----------AIVTdI~GTTRDvie- 257 (454)
T COG0486 190 IREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDR-----------AIVTDIAGTTRDVIE- 257 (454)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCc-----------eEecCCCCCccceEE-
Confidence 4445566666666666655444333 556799999999999999999999984 444444466553221
Q ss_pred eeecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHH
Q 005389 100 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIM 179 (699)
Q Consensus 100 ~~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~ 179 (699)
+..+..| ..+.|+||.|+.... ..++..=-+-..
T Consensus 258 e~i~i~G-----------------------------------------~pv~l~DTAGiRet~-----d~VE~iGIeRs~ 291 (454)
T COG0486 258 EDINLNG-----------------------------------------IPVRLVDTAGIRETD-----DVVERIGIERAK 291 (454)
T ss_pred EEEEECC-----------------------------------------EEEEEEecCCcccCc-----cHHHHHHHHHHH
Confidence 1112222 369999999998552 223322233456
Q ss_pred HHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCcc
Q 005389 180 SYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 232 (699)
Q Consensus 180 ~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~ 232 (699)
+.+.++| +||+|++++..+...+ ..+.. .-+.++++++|+||.|+..+..
T Consensus 292 ~~i~~AD-lvL~v~D~~~~~~~~d-~~~~~-~~~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 292 KAIEEAD-LVLFVLDASQPLDKED-LALIE-LLPKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred HHHHhCC-EEEEEEeCCCCCchhh-HHHHH-hcccCCCEEEEEechhcccccc
Confidence 6788888 9999999998766655 33444 5567899999999999997644
No 13
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.50 E-value=8.4e-13 Score=138.76 Aligned_cols=120 Identities=20% Similarity=0.163 Sum_probs=78.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCC-ccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.|+|+|.+|||||||+|+|+|.++..++.- .+||.++... .
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i------------~-------------------------- 43 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGI------------H-------------------------- 43 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEE------------E--------------------------
Confidence 589999999999999999999976433332 2344321110 0
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (699)
. .....+.||||||+.... ..+...+...+..++..+| ++++|++++...... ..+
T Consensus 44 --------------~--~~~~qii~vDTPG~~~~~-----~~l~~~~~~~~~~~l~~aD-vvl~VvD~~~~~~~~--~~i 99 (270)
T TIGR00436 44 --------------T--TGASQIIFIDTPGFHEKK-----HSLNRLMMKEARSAIGGVD-LILFVVDSDQWNGDG--EFV 99 (270)
T ss_pred --------------E--cCCcEEEEEECcCCCCCc-----chHHHHHHHHHHHHHhhCC-EEEEEEECCCCCchH--HHH
Confidence 0 001258999999997542 2233445556678889998 666677776543332 334
Q ss_pred HHhhCCCCCcEEEeecccccCCC
Q 005389 208 AGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 208 ~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
...+...+.++++|+||+|+..+
T Consensus 100 ~~~l~~~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 100 LTKLQNLKRPVVLTRNKLDNKFK 122 (270)
T ss_pred HHHHHhcCCCEEEEEECeeCCCH
Confidence 44454557899999999999743
No 14
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=3.4e-13 Score=137.05 Aligned_cols=185 Identities=19% Similarity=0.220 Sum_probs=118.8
Q ss_pred CCCEEE-EEcCCCCcHHHHHHHHhCCCCCccc-CCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHh
Q 005389 46 ELPQVA-VVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (699)
Q Consensus 46 ~lP~Iv-VvG~~ssGKSSLLnaL~G~~~lP~~-~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (699)
.-|-.+ ++|.+|+|||||+|||.+.+.-|++ .+.||+-++......
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~-------------------------------- 84 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY-------------------------------- 84 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhc--------------------------------
Confidence 345444 9999999999999999976665665 345555432211100
Q ss_pred hhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH
Q 005389 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (699)
Q Consensus 124 ~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~ 203 (699)
+..+|+|+||||+.+.... +..++..+..|+.+.+ ++|++.++....-..+
T Consensus 85 ----------------------~~~~l~lwDtPG~gdg~~~------D~~~r~~~~d~l~~~D-LvL~l~~~~draL~~d 135 (296)
T COG3596 85 ----------------------DGENLVLWDTPGLGDGKDK------DAEHRQLYRDYLPKLD-LVLWLIKADDRALGTD 135 (296)
T ss_pred ----------------------cccceEEecCCCcccchhh------hHHHHHHHHHHhhhcc-EEEEeccCCCccccCC
Confidence 0126999999999876433 3578899999999998 9999998876544434
Q ss_pred HHHHHHhhCCC--CCcEEEeecccccCCCcccHHHHhcCCccccccCEEEEEcCChhhhhccccHHHHHHHHHHhcC-CC
Q 005389 204 ALQIAGIADPD--GYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFR-SR 280 (699)
Q Consensus 204 ~l~l~~~~dp~--g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~~~~s~~~~~~~E~~fF~-~~ 280 (699)
..+++.+--. +.|+++|+|.+|...++.++. ...+.....+.. -+++....-.+||. .|
T Consensus 136 -~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~---------------~~~~~p~~a~~q--fi~~k~~~~~~~~q~V~ 197 (296)
T COG3596 136 -EDFLRDVIILGLDKRVLFVVTQADRAEPGREWD---------------SAGHQPSPAIKQ--FIEEKAEALGRLFQEVK 197 (296)
T ss_pred -HHHHHHHHHhccCceeEEEEehhhhhccccccc---------------cccCCCCHHHHH--HHHHHHHHHHHHHhhcC
Confidence 4555555432 389999999999998874431 011111111111 23333333334553 47
Q ss_pred CcccCc-cccCCcchHHHHHHHHHHHHHHh
Q 005389 281 PVYNGL-ADRCGVPQLAKKLNQILVQHIKA 309 (699)
Q Consensus 281 ~~~~~~-~~~~Gi~~L~~~L~~~L~~~i~~ 309 (699)
|+|... ...+|++.|..+|-+.+..+-+.
T Consensus 198 pV~~~~~r~~wgl~~l~~ali~~lp~e~rs 227 (296)
T COG3596 198 PVVAVSGRLPWGLKELVRALITALPVEARS 227 (296)
T ss_pred CeEEeccccCccHHHHHHHHHHhCcccccc
Confidence 777554 56699999988888877765544
No 15
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.47 E-value=6.9e-13 Score=143.78 Aligned_cols=206 Identities=19% Similarity=0.310 Sum_probs=129.7
Q ss_pred CcCCCCCchHHHHHHHHHHHHHhCCC-CC---CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeecc
Q 005389 17 SAVPLGGSVIPLVNKLQDIFAQLGSQ-ST---IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQT 92 (699)
Q Consensus 17 ~~~~~~~~l~~~~~~L~d~~~~lg~~-~~---~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~ 92 (699)
-+++=+..+-+|++.+...+. .... .. .+..+|+|||.+|+|||||+|+|+|.+-. ++-.+.++
T Consensus 145 ISA~Hg~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~-----------Iv~~~aGT 212 (444)
T COG1160 145 ISAEHGRGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERV-----------IVSDIAGT 212 (444)
T ss_pred eehhhccCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhccCceE-----------EecCCCCc
Confidence 444556777778887776542 1211 11 24689999999999999999999999743 33333333
Q ss_pred CCCcccceeecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHH
Q 005389 93 KTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEA 172 (699)
Q Consensus 93 ~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~ 172 (699)
+++.....+.+. ...+.||||.|+-+...-. ..++.
T Consensus 213 TRD~I~~~~e~~------------------------------------------~~~~~liDTAGiRrk~ki~--e~~E~ 248 (444)
T COG1160 213 TRDSIDIEFERD------------------------------------------GRKYVLIDTAGIRRKGKIT--ESVEK 248 (444)
T ss_pred cccceeeeEEEC------------------------------------------CeEEEEEECCCCCcccccc--cceEE
Confidence 333222222111 1258999999997654221 11111
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCcccHHHHhcCCccccccCEEEE
Q 005389 173 RIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 252 (699)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V 252 (699)
.--.-+...|..++ ++++|++|...+..+| .+++..+...|..+++|+||||+++..+...+.
T Consensus 249 ~Sv~rt~~aI~~a~-vvllviDa~~~~~~qD-~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~--------------- 311 (444)
T COG1160 249 YSVARTLKAIERAD-VVLLVIDATEGISEQD-LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEE--------------- 311 (444)
T ss_pred EeehhhHhHHhhcC-EEEEEEECCCCchHHH-HHHHHHHHHcCCCeEEEEEccccCCchhhHHHH---------------
Confidence 11112346677787 8889999999999999 789999999999999999999999863322211
Q ss_pred EcCChhhhhccccHHHHHHHHHHhcCCCCc-ccCccccCCcchHHHHHHHHHHHHHH
Q 005389 253 VNRSQEDIMFNRSIKDALVAEEKFFRSRPV-YNGLADRCGVPQLAKKLNQILVQHIK 308 (699)
Q Consensus 253 ~nrs~~d~~~~~s~~~~~~~E~~fF~~~~~-~~~~~~~~Gi~~L~~~L~~~L~~~i~ 308 (699)
..+.+.....|....|. +-++..+.|+..|.+.+.++...+-+
T Consensus 312 -------------~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ 355 (444)
T COG1160 312 -------------FKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATR 355 (444)
T ss_pred -------------HHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhcc
Confidence 12222233334443333 34556677887777777766555543
No 16
>PRK00089 era GTPase Era; Reviewed
Probab=99.44 E-value=3.4e-12 Score=135.61 Aligned_cols=121 Identities=27% Similarity=0.332 Sum_probs=80.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCcc-ccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC-TRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~-Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.|+|+|.+|||||||+|+|+|.++..++..+. ||..+.-
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~---------------------------------------- 46 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRG---------------------------------------- 46 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEE----------------------------------------
Confidence 49999999999999999999998644443332 2211100
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (699)
+.......+++|||||+.... ..+.+.+...+..++..+| +|++|+++...+...+ ..+
T Consensus 47 --------------i~~~~~~qi~~iDTPG~~~~~-----~~l~~~~~~~~~~~~~~~D-~il~vvd~~~~~~~~~-~~i 105 (292)
T PRK00089 47 --------------IVTEDDAQIIFVDTPGIHKPK-----RALNRAMNKAAWSSLKDVD-LVLFVVDADEKIGPGD-EFI 105 (292)
T ss_pred --------------EEEcCCceEEEEECCCCCCch-----hHHHHHHHHHHHHHHhcCC-EEEEEEeCCCCCChhH-HHH
Confidence 000011369999999997542 2334455666777888898 5566667666444433 455
Q ss_pred HHhhCCCCCcEEEeecccccCCC
Q 005389 208 AGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 208 ~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+..+...+.++++|+||+|+...
T Consensus 106 ~~~l~~~~~pvilVlNKiDl~~~ 128 (292)
T PRK00089 106 LEKLKKVKTPVILVLNKIDLVKD 128 (292)
T ss_pred HHHHhhcCCCEEEEEECCcCCCC
Confidence 55555557899999999999843
No 17
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.44 E-value=3.3e-13 Score=129.27 Aligned_cols=117 Identities=29% Similarity=0.433 Sum_probs=73.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+++|.+|+|||||+|+|+|... .++. +.+++.....+.+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~-~v~n-----------~pG~Tv~~~~g~~--------------------------- 42 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ-KVGN-----------WPGTTVEKKEGIF--------------------------- 42 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE-EEEE-----------STTSSSEEEEEEE---------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-eecC-----------CCCCCeeeeeEEE---------------------------
Confidence 699999999999999999999973 2222 1122211111111
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhc--CCCeeEEEEecCCCcccchHHHH
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
++ . ...+.||||||+.+..... .+ +.++.+|+. +++ +|++|+||..- ...+.
T Consensus 43 ------------~~--~-~~~~~lvDlPG~ysl~~~s----~e---e~v~~~~l~~~~~D-~ii~VvDa~~l---~r~l~ 96 (156)
T PF02421_consen 43 ------------KL--G-DQQVELVDLPGIYSLSSKS----EE---ERVARDYLLSEKPD-LIIVVVDATNL---ERNLY 96 (156)
T ss_dssp ------------EE--T-TEEEEEEE----SSSSSSS----HH---HHHHHHHHHHTSSS-EEEEEEEGGGH---HHHHH
T ss_pred ------------Ee--c-CceEEEEECCCcccCCCCC----cH---HHHHHHHHhhcCCC-EEEEECCCCCH---HHHHH
Confidence 11 1 1368999999997653221 12 234456663 565 78888888763 23367
Q ss_pred HHHhhCCCCCcEEEeecccccCCC
Q 005389 207 IAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 207 l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+..++...|.|+++|+||+|...+
T Consensus 97 l~~ql~e~g~P~vvvlN~~D~a~~ 120 (156)
T PF02421_consen 97 LTLQLLELGIPVVVVLNKMDEAER 120 (156)
T ss_dssp HHHHHHHTTSSEEEEEETHHHHHH
T ss_pred HHHHHHHcCCCEEEEEeCHHHHHH
Confidence 888888889999999999999854
No 18
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.42 E-value=2.9e-12 Score=139.17 Aligned_cols=126 Identities=23% Similarity=0.373 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
-..|+|++||.+|+|||||+|+|+|.++...+.-.+|+-|+.-.
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~------------------------------------ 230 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRR------------------------------------ 230 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEE------------------------------------
Confidence 36799999999999999999999998754333333444442211
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH-
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD- 203 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~- 203 (699)
+ ..|+...+.|+||||+.+. -|.++.+.++.. ..++.++| +||+|+|++......+
T Consensus 231 ---------------i--~~~~~~~i~l~DT~G~~~~----l~~~lie~f~~t-le~~~~AD-lil~VvD~s~~~~~~~~ 287 (351)
T TIGR03156 231 ---------------L--DLPDGGEVLLTDTVGFIRD----LPHELVAAFRAT-LEEVREAD-LLLHVVDASDPDREEQI 287 (351)
T ss_pred ---------------E--EeCCCceEEEEecCccccc----CCHHHHHHHHHH-HHHHHhCC-EEEEEEECCCCchHHHH
Confidence 1 1112236899999998542 134554556554 45788888 6677777765433222
Q ss_pred --HHHHHHhhCCCCCcEEEeecccccCC
Q 005389 204 --ALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 204 --~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
...+.+.+...+.++++|+||+|+.+
T Consensus 288 ~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 288 EAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred HHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 13455666555789999999999975
No 19
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.41 E-value=3.1e-12 Score=132.93 Aligned_cols=142 Identities=21% Similarity=0.293 Sum_probs=88.6
Q ss_pred HHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccc
Q 005389 30 NKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF 109 (699)
Q Consensus 30 ~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~ 109 (699)
++.++.++.|-. -+.++|+|+|.|.+|+|||||+++|++.+. -+.+ +.-|+.
T Consensus 152 ~~~r~~l~~LP~-Idp~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~-----------YPFTTK--------------- 203 (346)
T COG1084 152 RKARDHLKKLPA-IDPDLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAP-----------YPFTTK--------------- 203 (346)
T ss_pred HHHHHHHhcCCC-CCCCCCeEEEecCCCCcHHHHHHHHhcCCC-ccCC-----------CCcccc---------------
Confidence 333444444431 346899999999999999999999999863 1111 111211
Q ss_pred cChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeE
Q 005389 110 YDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLI 189 (699)
Q Consensus 110 ~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iI 189 (699)
.|.+-.+.-....+++|||||+-+.|..+ ...++....-.+++-.++|
T Consensus 204 ---------------------------~i~vGhfe~~~~R~QvIDTPGlLDRPl~E-----rN~IE~qAi~AL~hl~~~I 251 (346)
T COG1084 204 ---------------------------GIHVGHFERGYLRIQVIDTPGLLDRPLEE-----RNEIERQAILALRHLAGVI 251 (346)
T ss_pred ---------------------------ceeEeeeecCCceEEEecCCcccCCChHH-----hcHHHHHHHHHHHHhcCeE
Confidence 11111111122369999999998776443 1233333334444445688
Q ss_pred EEEecCC--CcccchHHHHHHHhhCCC-CCcEEEeecccccCCCc
Q 005389 190 LAVTPAN--SDLANSDALQIAGIADPD-GYRTIGIITKLDIMDRG 231 (699)
Q Consensus 190 L~V~~a~--~d~~~~~~l~l~~~~dp~-g~rti~VlTK~D~~~~~ 231 (699)
|+++|++ ..+.-.+-..|..++.+. ..+++.|+||+|..+.+
T Consensus 252 lF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 252 LFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE 296 (346)
T ss_pred EEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh
Confidence 8888776 345555556777777665 46899999999999653
No 20
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.40 E-value=4e-12 Score=115.87 Aligned_cols=115 Identities=26% Similarity=0.348 Sum_probs=73.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCC-ccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
+|+|+|.+|+|||||+|+|+|......+.. .+|+.+..-.+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~------------------------------------- 43 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFE------------------------------------- 43 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEE-------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeee-------------------------------------
Confidence 699999999999999999999765455443 455554211000
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (699)
+ ....+.|+||||+..... .+........+.+.+...+ ++++|++++... +....++
T Consensus 44 --------------~---~~~~~~~vDtpG~~~~~~----~~~~~~~~~~~~~~~~~~d-~ii~vv~~~~~~-~~~~~~~ 100 (116)
T PF01926_consen 44 --------------Y---NNKKFILVDTPGINDGES----QDNDGKEIRKFLEQISKSD-LIIYVVDASNPI-TEDDKNI 100 (116)
T ss_dssp --------------E---TTEEEEEEESSSCSSSSH----HHHHHHHHHHHHHHHCTES-EEEEEEETTSHS-HHHHHHH
T ss_pred --------------e---ceeeEEEEeCCCCcccch----hhHHHHHHHHHHHHHHHCC-EEEEEEECCCCC-CHHHHHH
Confidence 0 012578999999976421 1111112333555567777 566666666633 3334577
Q ss_pred HHhhCCCCCcEEEeecc
Q 005389 208 AGIADPDGYRTIGIITK 224 (699)
Q Consensus 208 ~~~~dp~g~rti~VlTK 224 (699)
.+++. .+.++++|+||
T Consensus 101 ~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 101 LRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHH-TTSEEEEEEES
T ss_pred HHHHh-cCCCEEEEEcC
Confidence 77776 78999999998
No 21
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.38 E-value=5.8e-12 Score=125.90 Aligned_cols=133 Identities=18% Similarity=0.258 Sum_probs=81.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCC--ccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
+|++||.+|+|||||+|+|+|.+.+.++.. .+|+......
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~-------------------------------------- 43 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKES-------------------------------------- 43 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceee--------------------------------------
Confidence 699999999999999999999987655532 2343321100
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH--
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (699)
..+ ....++||||||+.+... ...++...+...+......++ +||+|+++.. +...+.
T Consensus 44 -------------~~~---~~~~i~viDTPG~~d~~~--~~~~~~~~i~~~~~~~~~g~~-~illVi~~~~-~t~~d~~~ 103 (196)
T cd01852 44 -------------AVW---DGRRVNVIDTPGLFDTSV--SPEQLSKEIVRCLSLSAPGPH-AFLLVVPLGR-FTEEEEQA 103 (196)
T ss_pred -------------EEE---CCeEEEEEECcCCCCccC--ChHHHHHHHHHHHHhcCCCCE-EEEEEEECCC-cCHHHHHH
Confidence 001 012589999999987632 223444444444444455666 6777777776 554442
Q ss_pred HHHHHhhCCC--CCcEEEeecccccCCCcccHHHHhcC
Q 005389 205 LQIAGIADPD--GYRTIGIITKLDIMDRGTDARNLLLG 240 (699)
Q Consensus 205 l~l~~~~dp~--g~rti~VlTK~D~~~~~~~~~~~l~~ 240 (699)
++.++++-+. ..++++|+|++|.+..+ ...+++..
T Consensus 104 l~~l~~~fg~~~~~~~ivv~T~~d~l~~~-~~~~~~~~ 140 (196)
T cd01852 104 VETLQELFGEKVLDHTIVLFTRGDDLEGG-TLEDYLEN 140 (196)
T ss_pred HHHHHHHhChHhHhcEEEEEECccccCCC-cHHHHHHh
Confidence 3333333221 36899999999998654 44444433
No 22
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.36 E-value=1.6e-11 Score=117.03 Aligned_cols=122 Identities=28% Similarity=0.362 Sum_probs=76.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
-.+|+++|.+|||||||+|+|+|.++.+..... +|+.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 44 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRG-------------------------------------- 44 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEE--------------------------------------
Confidence 457999999999999999999998753332221 11111000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
+.......+.+|||||+..... .....+......++...+ ++++|+++.......+ .
T Consensus 45 ----------------~~~~~~~~~~liDtpG~~~~~~-----~~~~~~~~~~~~~~~~~d-~i~~v~d~~~~~~~~~-~ 101 (168)
T cd04163 45 ----------------IYTDDDAQIIFVDTPGIHKPKK-----KLGERMVKAAWSALKDVD-LVLFVVDASEPIGEGD-E 101 (168)
T ss_pred ----------------EEEcCCeEEEEEECCCCCcchH-----HHHHHHHHHHHHHHHhCC-EEEEEEECCCccCchH-H
Confidence 0000113689999999875421 112335556677888888 5555666655433333 3
Q ss_pred HHHHhhCCCCCcEEEeecccccCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.+.+.+...+.+.++|+||+|+..
T Consensus 102 ~~~~~~~~~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 102 FILELLKKSKTPVILVLNKIDLVK 125 (168)
T ss_pred HHHHHHHHhCCCEEEEEEchhccc
Confidence 455555555789999999999984
No 23
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.36 E-value=1.6e-11 Score=118.16 Aligned_cols=127 Identities=24% Similarity=0.350 Sum_probs=76.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
.++|+++|..++|||||+|+|+|..+.+.+..+.|.... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~------------~~--------------------------- 42 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDS------------ID--------------------------- 42 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCc------------ee---------------------------
Confidence 578999999999999999999998653333222111110 00
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
..+... ..++++|||||+.+..... ..++.........++...+ ++++|++++....... ..
T Consensus 43 -----------~~~~~~---~~~~~iiDtpG~~~~~~~~--~~~e~~~~~~~~~~~~~~d-~vi~v~d~~~~~~~~~-~~ 104 (174)
T cd01895 43 -----------VPFEYD---GKKYTLIDTAGIRRKGKVE--EGIEKYSVLRTLKAIERAD-VVLLVIDATEGITEQD-LR 104 (174)
T ss_pred -----------eEEEEC---CeeEEEEECCCCccccchh--ccHHHHHHHHHHHHHhhcC-eEEEEEeCCCCcchhH-HH
Confidence 001111 1257899999987542111 1112111122345667777 5666667766555433 45
Q ss_pred HHHhhCCCCCcEEEeecccccCCC
Q 005389 207 IAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 207 l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+.+.+...+.+.++|+||+|+.+.
T Consensus 105 ~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 105 IAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHHHHhcCCCEEEEEeccccCCc
Confidence 556655567899999999999865
No 24
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.36 E-value=1.9e-11 Score=121.35 Aligned_cols=126 Identities=24% Similarity=0.352 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc--cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHH
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (699)
-.+|.|+|+|.+|+|||||+|+|+|.++.+..+.. ||+.+..
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~------------------------------------ 65 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINF------------------------------------ 65 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEE------------------------------------
Confidence 37899999999999999999999998643332211 2221100
Q ss_pred hhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCe--eEEEEecCCCccc
Q 005389 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSC--LILAVTPANSDLA 200 (699)
Q Consensus 123 t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~--iIL~V~~a~~d~~ 200 (699)
..+ ..++.||||||+.... .+....+.+..++..|++..+. ++++|+++.....
T Consensus 66 -----------------~~~----~~~l~l~DtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~ 121 (196)
T PRK00454 66 -----------------FEV----NDKLRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLK 121 (196)
T ss_pred -----------------Eec----CCeEEEeCCCCCCCcC---CCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCC
Confidence 000 1369999999976432 1233445667788888886542 4555566655444
Q ss_pred chHHHHHHHhhCCCCCcEEEeecccccCCCc
Q 005389 201 NSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 201 ~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
..+ ..+.+.+...+.++++|+||+|+.+.+
T Consensus 122 ~~~-~~i~~~l~~~~~~~iiv~nK~Dl~~~~ 151 (196)
T PRK00454 122 ELD-LQMIEWLKEYGIPVLIVLTKADKLKKG 151 (196)
T ss_pred HHH-HHHHHHHHHcCCcEEEEEECcccCCHH
Confidence 333 334455555678899999999998643
No 25
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.35 E-value=2.8e-11 Score=135.52 Aligned_cols=150 Identities=19% Similarity=0.300 Sum_probs=93.1
Q ss_pred CCCchHHHHHHHHHHHHHhCCC--CCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcc
Q 005389 21 LGGSVIPLVNKLQDIFAQLGSQ--STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEE 97 (699)
Q Consensus 21 ~~~~l~~~~~~L~d~~~~lg~~--~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~ 97 (699)
-+..+-.+++.+.+.+..-+.. ..-...+|+|+|.+++|||||+|+|+|.+....+..+ +|+.++...
T Consensus 144 ~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~--------- 214 (429)
T TIGR03594 144 HGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIP--------- 214 (429)
T ss_pred cCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEE---------
Confidence 3555666777766544321111 1123468999999999999999999998654333221 222221111
Q ss_pred cceeecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHH
Q 005389 98 YGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTM 177 (699)
Q Consensus 98 ~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~l 177 (699)
+... ...++||||||+.+..... ..++......
T Consensus 215 ------------------------------------------~~~~---~~~~~liDT~G~~~~~~~~--~~~e~~~~~~ 247 (429)
T TIGR03594 215 ------------------------------------------FERN---GKKYLLIDTAGIRRKGKVT--EGVEKYSVLR 247 (429)
T ss_pred ------------------------------------------EEEC---CcEEEEEECCCccccccch--hhHHHHHHHH
Confidence 1111 1258999999986543211 1223222233
Q ss_pred HHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccC
Q 005389 178 IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 178 v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
...+++.+| ++++|+++......++ .++++.+...+.+.|+|+||+|+.
T Consensus 248 ~~~~~~~ad-~~ilV~D~~~~~~~~~-~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 248 TLKAIERAD-VVLLVLDATEGITEQD-LRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHHhCC-EEEEEEECCCCccHHH-HHHHHHHHHcCCcEEEEEECcccC
Confidence 457888898 6666667776666655 567777766789999999999998
No 26
>PRK11058 GTPase HflX; Provisional
Probab=99.34 E-value=2.1e-11 Score=135.63 Aligned_cols=125 Identities=22% Similarity=0.373 Sum_probs=80.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
.+|.|++||.+|||||||+|+|+|.++.....-.+|+-++.-
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~-------------------------------------- 237 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLR-------------------------------------- 237 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceE--------------------------------------
Confidence 579999999999999999999999876422222233333211
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH--
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD-- 203 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~-- 203 (699)
.+.+ +....+.|+||||+.+. .|.++.+.+... ..++..++ ++|+|+|++.......
T Consensus 238 -------------~i~l--~~~~~~~l~DTaG~~r~----lp~~lve~f~~t-l~~~~~AD-lIL~VvDaS~~~~~e~l~ 296 (426)
T PRK11058 238 -------------RIDV--ADVGETVLADTVGFIRH----LPHDLVAAFKAT-LQETRQAT-LLLHVVDAADVRVQENIE 296 (426)
T ss_pred -------------EEEe--CCCCeEEEEecCccccc----CCHHHHHHHHHH-HHHhhcCC-EEEEEEeCCCccHHHHHH
Confidence 1111 11125789999998542 134544555553 56778888 6677777765432222
Q ss_pred -HHHHHHhhCCCCCcEEEeecccccCC
Q 005389 204 -ALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 204 -~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
...++.++...+.++++|+||+|+.+
T Consensus 297 ~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 297 AVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred HHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 13456666656789999999999974
No 27
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.34 E-value=3.8e-11 Score=134.69 Aligned_cols=151 Identities=23% Similarity=0.322 Sum_probs=92.9
Q ss_pred CCCchHHHHHHHHHHHHHhCCC-CCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCccc
Q 005389 21 LGGSVIPLVNKLQDIFAQLGSQ-STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEY 98 (699)
Q Consensus 21 ~~~~l~~~~~~L~d~~~~lg~~-~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~ 98 (699)
-+..+-.+++.+......-... ..-+.++|+|+|.+|+|||||+|+|+|.+...++..+ +|+..+...+
T Consensus 146 ~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~--------- 216 (435)
T PRK00093 146 HGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPF--------- 216 (435)
T ss_pred CCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEE---------
Confidence 3455656666655421110000 0224678999999999999999999998754443322 2222211111
Q ss_pred ceeecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHH
Q 005389 99 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMI 178 (699)
Q Consensus 99 ~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv 178 (699)
.. +...+.||||||+.+....+ ..++.....-.
T Consensus 217 --------------------------------------------~~-~~~~~~lvDT~G~~~~~~~~--~~~e~~~~~~~ 249 (435)
T PRK00093 217 --------------------------------------------ER-DGQKYTLIDTAGIRRKGKVT--EGVEKYSVIRT 249 (435)
T ss_pred --------------------------------------------EE-CCeeEEEEECCCCCCCcchh--hHHHHHHHHHH
Confidence 00 11358999999986543211 12232222334
Q ss_pred HHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCC
Q 005389 179 MSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 179 ~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.++++.+| ++++|+++......++ .++++.+...+.++++|+||+|+.+
T Consensus 250 ~~~~~~ad-~~ilViD~~~~~~~~~-~~i~~~~~~~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 250 LKAIERAD-VVLLVIDATEGITEQD-LRIAGLALEAGRALVIVVNKWDLVD 298 (435)
T ss_pred HHHHHHCC-EEEEEEeCCCCCCHHH-HHHHHHHHHcCCcEEEEEECccCCC
Confidence 56888888 6667777877776665 5677777777899999999999984
No 28
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.33 E-value=2.7e-11 Score=117.04 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=23.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
|.|+++|.+|+|||||+|+|++..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999999865
No 29
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.33 E-value=1.4e-11 Score=121.14 Aligned_cols=125 Identities=23% Similarity=0.321 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCC--ccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHH
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (699)
-..|+|+|+|..|+|||||+|+|+|..+.+.-+. .+|+.+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~------------------------------------- 58 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLIN------------------------------------- 58 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEE-------------------------------------
Confidence 5688999999999999999999999864332111 1121110
Q ss_pred hhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCC--eeEEEEecCCCccc
Q 005389 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPS--CLILAVTPANSDLA 200 (699)
Q Consensus 123 t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~--~iIL~V~~a~~d~~ 200 (699)
...+ + .++.||||||+..... +......+..+...|++..+ +.+++|++++..+.
T Consensus 59 ----------------~~~~--~--~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~ 115 (179)
T TIGR03598 59 ----------------FFEV--N--DGFRLVDLPGYGYAKV---SKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLK 115 (179)
T ss_pred ----------------EEEe--C--CcEEEEeCCCCccccC---ChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCC
Confidence 0001 0 2589999999865422 22334566777778887532 35666777777666
Q ss_pred chHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 201 NSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 201 ~~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
..+ ..+.+.+...+.++++|+||+|+++.
T Consensus 116 ~~~-~~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 116 ELD-LEMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred HHH-HHHHHHHHHcCCCEEEEEECcccCCH
Confidence 555 45566666678999999999999854
No 30
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.31 E-value=4e-11 Score=129.39 Aligned_cols=124 Identities=19% Similarity=0.254 Sum_probs=75.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
++.|++||.+|||||||||+|++...-......+|+.|..-.+.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~------------------------------------ 201 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVR------------------------------------ 201 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEE------------------------------------
Confidence 57899999999999999999998752111112345555322211
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH--
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (699)
+ ++...++++||||+....... ..+.....+++.+++ ++++|+|+.....-.+.
T Consensus 202 ---------------~--~~~~~~~i~D~PGli~ga~~~------~gLg~~flrhie~a~-vlI~ViD~s~~~s~e~~~~ 257 (335)
T PRK12299 202 ---------------V--DDYKSFVIADIPGLIEGASEG------AGLGHRFLKHIERTR-LLLHLVDIEAVDPVEDYKT 257 (335)
T ss_pred ---------------e--CCCcEEEEEeCCCccCCCCcc------ccHHHHHHHHhhhcC-EEEEEEcCCCCCCHHHHHH
Confidence 0 111358999999997543221 123344456777887 66666666532222221
Q ss_pred -HHHHHhhCC--CCCcEEEeecccccCCC
Q 005389 205 -LQIAGIADP--DGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 -l~l~~~~dp--~g~rti~VlTK~D~~~~ 230 (699)
...+..+++ ...+.++|+||+|+.+.
T Consensus 258 ~~~EL~~~~~~L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 258 IRNELEKYSPELADKPRILVLNKIDLLDE 286 (335)
T ss_pred HHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence 222333333 36899999999999753
No 31
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.31 E-value=1.2e-10 Score=130.74 Aligned_cols=145 Identities=22% Similarity=0.259 Sum_probs=85.5
Q ss_pred CchHHHHHHHHHHHHHhCCCCC-CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccce
Q 005389 23 GSVIPLVNKLQDIFAQLGSQST-IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGE 100 (699)
Q Consensus 23 ~~l~~~~~~L~d~~~~lg~~~~-~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~ 100 (699)
..+-.+.++|.++.+....... -+-++|+++|.+|+|||||+|+|+|.+...++..+ +|+-.+..
T Consensus 190 ~~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~------------- 256 (449)
T PRK05291 190 EKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEE------------- 256 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEE-------------
Confidence 3445555556655444332211 24578999999999999999999998753332221 22211111
Q ss_pred eecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHH
Q 005389 101 FLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMS 180 (699)
Q Consensus 101 ~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~ 180 (699)
.+.+. ...+.|+||||+.+.. ..++..--.....
T Consensus 257 --------------------------------------~i~~~---g~~i~l~DT~G~~~~~-----~~ie~~gi~~~~~ 290 (449)
T PRK05291 257 --------------------------------------HINLD---GIPLRLIDTAGIRETD-----DEVEKIGIERSRE 290 (449)
T ss_pred --------------------------------------EEEEC---CeEEEEEeCCCCCCCc-----cHHHHHHHHHHHH
Confidence 11111 1258999999986421 1122211223456
Q ss_pred HhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 181 YIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 181 yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
++.+++ ++++|++++......+ ..+... ..+.++++|+||+|+.+.
T Consensus 291 ~~~~aD-~il~VvD~s~~~s~~~-~~~l~~--~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 291 AIEEAD-LVLLVLDASEPLTEED-DEILEE--LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred HHHhCC-EEEEEecCCCCCChhH-HHHHHh--cCCCCcEEEEEhhhcccc
Confidence 888898 6667777765543333 344443 346899999999999753
No 32
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.30 E-value=9.3e-11 Score=132.81 Aligned_cols=151 Identities=17% Similarity=0.201 Sum_probs=91.4
Q ss_pred CCCCchHHHHHHHHHHHHHhC--CCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCC-ccccceEEEEeeccCCCc
Q 005389 20 PLGGSVIPLVNKLQDIFAQLG--SQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDE 96 (699)
Q Consensus 20 ~~~~~l~~~~~~L~d~~~~lg--~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~ 96 (699)
.-+..+-++++.|.+.+.... ....-..++|+|||.+|+|||||+|+|+|.++..++.. .+|+-+...
T Consensus 182 ~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~--------- 252 (472)
T PRK03003 182 LHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDS--------- 252 (472)
T ss_pred CCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceE---------
Confidence 345566666666665432210 00113568999999999999999999999875333221 223222111
Q ss_pred ccceeecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHH
Q 005389 97 EYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRT 176 (699)
Q Consensus 97 ~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~ 176 (699)
.+.+. ...+.||||||+.+..... .-.+.+..
T Consensus 253 ------------------------------------------~~~~~---~~~~~l~DTaG~~~~~~~~---~~~e~~~~ 284 (472)
T PRK03003 253 ------------------------------------------LIELG---GKTWRFVDTAGLRRRVKQA---SGHEYYAS 284 (472)
T ss_pred ------------------------------------------EEEEC---CEEEEEEECCCcccccccc---chHHHHHH
Confidence 11111 1247899999985432111 11123333
Q ss_pred H-HHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCC
Q 005389 177 M-IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 177 l-v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
+ ...+++.++ ++++|+++......++ ++++..+...+.++|+|+||+|+.+
T Consensus 285 ~~~~~~i~~ad-~vilV~Da~~~~s~~~-~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 285 LRTHAAIEAAE-VAVVLIDASEPISEQD-QRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHHHHhcCC-EEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECcccCC
Confidence 3 345788888 5666667776665555 5666666667899999999999975
No 33
>PRK15494 era GTPase Era; Provisional
Probab=99.29 E-value=9.8e-11 Score=126.95 Aligned_cols=122 Identities=20% Similarity=0.310 Sum_probs=75.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..|++||.+|+|||||+|+|+|..+..++..+ +||.... +.
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~------------~~-------------------------- 94 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIIT------------GI-------------------------- 94 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEE------------EE--------------------------
Confidence 37999999999999999999998763222221 2222110 00
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
+. .+ ...+.||||||+.... ..+...+...+..++..++ ++|+|+++...+...+ ..
T Consensus 95 -------------~~--~~-~~qi~~~DTpG~~~~~-----~~l~~~~~r~~~~~l~~aD-vil~VvD~~~s~~~~~-~~ 151 (339)
T PRK15494 95 -------------IT--LK-DTQVILYDTPGIFEPK-----GSLEKAMVRCAWSSLHSAD-LVLLIIDSLKSFDDIT-HN 151 (339)
T ss_pred -------------EE--eC-CeEEEEEECCCcCCCc-----ccHHHHHHHHHHHHhhhCC-EEEEEEECCCCCCHHH-HH
Confidence 00 11 1258999999986431 1233344455556788888 4555566655444433 23
Q ss_pred HHHhhCCCCCcEEEeecccccCCC
Q 005389 207 IAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 207 l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
++..+...+.+.|+|+||+|+.+.
T Consensus 152 il~~l~~~~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 152 ILDKLRSLNIVPIFLLNKIDIESK 175 (339)
T ss_pred HHHHHHhcCCCEEEEEEhhcCccc
Confidence 444444456788999999998653
No 34
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.29 E-value=4.6e-11 Score=119.81 Aligned_cols=127 Identities=22% Similarity=0.359 Sum_probs=77.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
-..|+|+|+|.+|||||||+|+|++..+.+.+....|..+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~------------------------------------- 81 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTR------------------------------------- 81 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeE-------------------------------------
Confidence 3478999999999999999999999875333332222222110
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH-
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD- 203 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~- 203 (699)
.+..++...++||||||+.+.. +....+.+.... .++..++ .+++|+++.......+
T Consensus 82 ----------------~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~~~-~~~~~~d-~ii~v~D~~~~~~~~~~ 139 (204)
T cd01878 82 ----------------RLRLPDGREVLLTDTVGFIRDL----PHQLVEAFRSTL-EEVAEAD-LLLHVVDASDPDYEEQI 139 (204)
T ss_pred ----------------EEEecCCceEEEeCCCccccCC----CHHHHHHHHHHH-HHHhcCC-eEEEEEECCCCChhhHH
Confidence 0111111258999999985431 122333444443 4566777 5555666654433222
Q ss_pred --HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 --ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 --~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
...+.+.+...+.++++|+||+|+...
T Consensus 140 ~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 140 ETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred HHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 234555665557899999999999754
No 35
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.29 E-value=5.6e-11 Score=134.62 Aligned_cols=124 Identities=23% Similarity=0.223 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (699)
-..|.|+|||.+|+|||||+|+|+|..+...+..+ +|+-.
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~--------------------------------------- 76 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDR--------------------------------------- 76 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEee---------------------------------------
Confidence 45799999999999999999999997642222211 12111
Q ss_pred hhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH
Q 005389 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (699)
Q Consensus 124 ~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~ 203 (699)
+...+...+ ..+.||||||+... ...+...+...+..|+..++ +||+|+++.......+
T Consensus 77 --------------~~~~~~~~~-~~~~l~DT~G~~~~-----~~~~~~~~~~~~~~~~~~aD-~il~VvD~~~~~s~~~ 135 (472)
T PRK03003 77 --------------VSYDAEWNG-RRFTVVDTGGWEPD-----AKGLQASVAEQAEVAMRTAD-AVLFVVDATVGATATD 135 (472)
T ss_pred --------------EEEEEEECC-cEEEEEeCCCcCCc-----chhHHHHHHHHHHHHHHhCC-EEEEEEECCCCCCHHH
Confidence 111111111 24889999998632 13455677888888999998 6666677766544433
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
..++..+...+.++++|+||+|+..
T Consensus 136 -~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 136 -EAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred -HHHHHHHHHcCCCEEEEEECccCCc
Confidence 4556666667899999999999864
No 36
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.29 E-value=4.7e-10 Score=125.55 Aligned_cols=148 Identities=24% Similarity=0.245 Sum_probs=88.8
Q ss_pred CCCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccc
Q 005389 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYG 99 (699)
Q Consensus 21 ~~~~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~ 99 (699)
+...+..+.+.|.++++.......-+..+|+++|.+|+|||||+|+|++.+...++.-+ +|+-..+.
T Consensus 177 ~~~~l~~~~~~l~~ll~~~~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~------------ 244 (442)
T TIGR00450 177 LNQLLLSIIAELKDILNSYKLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEG------------ 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEE------------
Confidence 34445566666666666553222235678999999999999999999997642222211 22221111
Q ss_pred eeecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHH
Q 005389 100 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIM 179 (699)
Q Consensus 100 ~~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~ 179 (699)
.+.+. ...+.||||||+.... ..++..--....
T Consensus 245 ---------------------------------------~i~~~---g~~v~l~DTaG~~~~~-----~~ie~~gi~~~~ 277 (442)
T TIGR00450 245 ---------------------------------------DFELN---GILIKLLDTAGIREHA-----DFVERLGIEKSF 277 (442)
T ss_pred ---------------------------------------EEEEC---CEEEEEeeCCCcccch-----hHHHHHHHHHHH
Confidence 11111 1257899999986431 112211113456
Q ss_pred HHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 180 SYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 180 ~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.|++.++ ++++|++++......+ . +...+...+.++|+|+||+|+.+.
T Consensus 278 ~~~~~aD-~il~V~D~s~~~s~~~-~-~l~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 278 KAIKQAD-LVIYVLDASQPLTKDD-F-LIIDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred HHHhhCC-EEEEEEECCCCCChhH-H-HHHHHhhCCCCEEEEEECccCCCc
Confidence 7889898 6666666665444333 2 444554457899999999999754
No 37
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.29 E-value=5.9e-11 Score=130.60 Aligned_cols=123 Identities=17% Similarity=0.218 Sum_probs=73.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
+..|++||.+|||||||||+|++...-....-.+|+.|..-.+..
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~----------------------------------- 203 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRV----------------------------------- 203 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEe-----------------------------------
Confidence 457999999999999999999998631111223566664332211
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCC----Ccccch
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN----SDLANS 202 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~----~d~~~~ 202 (699)
++...++|+||||+.+..... . .+.....+++.+++ ++|+|+++. .+.. .
T Consensus 204 ------------------~~~~~i~~vDtPGi~~~a~~~--~----~Lg~~~l~~i~rad-vlL~VVD~s~~~~~d~~-e 257 (390)
T PRK12298 204 ------------------DDERSFVVADIPGLIEGASEG--A----GLGIRFLKHLERCR-VLLHLIDIAPIDGSDPV-E 257 (390)
T ss_pred ------------------CCCcEEEEEeCCCccccccch--h----hHHHHHHHHHHhCC-EEEEEeccCcccccChH-H
Confidence 111248999999998643211 1 11222235788888 666666654 1111 1
Q ss_pred HHHHHHHhhCC-----CCCcEEEeecccccCCC
Q 005389 203 DALQIAGIADP-----DGYRTIGIITKLDIMDR 230 (699)
Q Consensus 203 ~~l~l~~~~dp-----~g~rti~VlTK~D~~~~ 230 (699)
+...+.+++.. ...+.++|+||+|+...
T Consensus 258 ~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 258 NARIIINELEKYSPKLAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred HHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence 11233333332 25899999999999753
No 38
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=6.3e-10 Score=124.71 Aligned_cols=167 Identities=23% Similarity=0.301 Sum_probs=114.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCC-ccccChhHHHHHHHHHhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPG-KRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g-~~~~d~~~i~~~i~~~t~~ 125 (699)
--.|++.|+.|+||||++||++-.++||.|.|+||.|-.++. ++.... .+...+| +.-.|...+...+.+.-..
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Ve--gadG~e---~vl~~~~s~ek~d~~ti~~~~haL~~~ 183 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVE--GADGAE---AVLATEGSEEKIDMKTINQLAHALKPD 183 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeec--ccCCcc---eeeccCCCcccccHHHHhHHHHhcCcc
Confidence 346999999999999999999999999999999999987663 322111 1222222 1122333333222221111
Q ss_pred hcCCCCCccccceEEEEecCCc------cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcc
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHV------LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL 199 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~------~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~ 199 (699)
. . -...--++|++|+. -++.|+|.||+.-.+ .....+.++..++| ++++|+.|...+
T Consensus 184 ~-----~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s----------e~tswid~~cldaD-VfVlV~NaEntl 246 (749)
T KOG0448|consen 184 K-----D-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS----------ELTSWIDSFCLDAD-VFVLVVNAENTL 246 (749)
T ss_pred c-----c-cCcceEEEEEecCccchhhhccceeccCCCCCCch----------hhhHHHHHHhhcCC-eEEEEecCccHh
Confidence 1 0 12233678888876 379999999997543 44567778888898 888888888888
Q ss_pred cchHHHHHHHhhCCCCCcEEEeecccccCCCcccHHH
Q 005389 200 ANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARN 236 (699)
Q Consensus 200 ~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~~~ 236 (699)
+.++ .++...+......++++.||||......++.+
T Consensus 247 t~se-k~Ff~~vs~~KpniFIlnnkwDasase~ec~e 282 (749)
T KOG0448|consen 247 TLSE-KQFFHKVSEEKPNIFILNNKWDASASEPECKE 282 (749)
T ss_pred HHHH-HHHHHHhhccCCcEEEEechhhhhcccHHHHH
Confidence 8776 67888887776667777799999987666643
No 39
>COG2262 HflX GTPases [General function prediction only]
Probab=99.29 E-value=8e-11 Score=126.08 Aligned_cols=167 Identities=21% Similarity=0.306 Sum_probs=111.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHh
Q 005389 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (699)
Q Consensus 44 ~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (699)
.-+.|+|++||.+|||||||+|+|+|...+-.+.-..|--|+ ++
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpt-------tR----------------------------- 232 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPT-------TR----------------------------- 232 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCc-------ee-----------------------------
Confidence 468999999999999999999999998753333222222221 00
Q ss_pred hhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH
Q 005389 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (699)
Q Consensus 124 ~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~ 203 (699)
++++ ++...+.|-||-|+++. =|+.+.+.++.... -+..+| ++|.|+|+..+.....
T Consensus 233 ---------------~~~l--~~g~~vlLtDTVGFI~~----LP~~LV~AFksTLE-E~~~aD-lllhVVDaSdp~~~~~ 289 (411)
T COG2262 233 ---------------RIEL--GDGRKVLLTDTVGFIRD----LPHPLVEAFKSTLE-EVKEAD-LLLHVVDASDPEILEK 289 (411)
T ss_pred ---------------EEEe--CCCceEEEecCccCccc----CChHHHHHHHHHHH-HhhcCC-EEEEEeecCChhHHHH
Confidence 1111 22236899999999854 36788878877654 466677 7788888776532222
Q ss_pred ---HHHHHHhhCCCCCcEEEeecccccCCCcccHHHHhcCCccccccCEEEEEcCChhhhhccccHHHHHHHHHHhcCCC
Q 005389 204 ---ALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSR 280 (699)
Q Consensus 204 ---~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~~~~s~~~~~~~E~~fF~~~ 280 (699)
...++.++.-...|+|.|+||+|++..... .......+ ..
T Consensus 290 ~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~------------------------------------~~~~~~~~-~~ 332 (411)
T COG2262 290 LEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI------------------------------------LAELERGS-PN 332 (411)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEecccccCchhh------------------------------------hhhhhhcC-CC
Confidence 256778887777999999999999865320 00111111 24
Q ss_pred CcccCccccCCcchHHHHHHHHHHHH
Q 005389 281 PVYNGLADRCGVPQLAKKLNQILVQH 306 (699)
Q Consensus 281 ~~~~~~~~~~Gi~~L~~~L~~~L~~~ 306 (699)
++|-++.++.|++.|+..|.+.+...
T Consensus 333 ~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 333 PVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred eEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 67888889999988888877766644
No 40
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.28 E-value=4.8e-11 Score=133.61 Aligned_cols=121 Identities=24% Similarity=0.248 Sum_probs=84.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCC-ccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.|+|||.+|+|||||+|.|+|.....++.. .+||......
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~--------------------------------------- 41 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGD--------------------------------------- 41 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEE---------------------------------------
Confidence 489999999999999999999864322221 2333221110
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (699)
+.+. ...+.||||||+... ...+.+.+.+.+..++..++ ++++|+++.......+ ..+
T Consensus 42 ------------~~~~---~~~~~liDTpG~~~~-----~~~~~~~~~~~~~~~~~~ad-~vl~vvD~~~~~~~~d-~~i 99 (429)
T TIGR03594 42 ------------AEWG---GREFILIDTGGIEED-----DDGLDKQIREQAEIAIEEAD-VILFVVDGREGLTPED-EEI 99 (429)
T ss_pred ------------EEEC---CeEEEEEECCCCCCc-----chhHHHHHHHHHHHHHhhCC-EEEEEEeCCCCCCHHH-HHH
Confidence 1111 124899999998532 24566788888999999998 7777778776665544 456
Q ss_pred HHhhCCCCCcEEEeecccccCCC
Q 005389 208 AGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 208 ~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
++.+...+.++++|+||+|+...
T Consensus 100 ~~~l~~~~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 100 AKWLRKSGKPVILVANKIDGKKE 122 (429)
T ss_pred HHHHHHhCCCEEEEEECccCCcc
Confidence 66666668999999999998754
No 41
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.27 E-value=1.7e-10 Score=136.92 Aligned_cols=153 Identities=24% Similarity=0.247 Sum_probs=93.3
Q ss_pred CCCCCchHHHHHHHHHHHHHhCCCC----CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccc-CCccccceEEEEeeccC
Q 005389 19 VPLGGSVIPLVNKLQDIFAQLGSQS----TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTK 93 (699)
Q Consensus 19 ~~~~~~l~~~~~~L~d~~~~lg~~~----~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~-~~~~Tr~p~~~~l~~~~ 93 (699)
+.-+..+-.+++.|.+.+..-.... .-+.++|+++|.+|+|||||+|+|+|.++..++ ...+|+-+...
T Consensus 418 A~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~------ 491 (712)
T PRK09518 418 AMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDE------ 491 (712)
T ss_pred CCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCccee------
Confidence 3345566667777665442210001 124689999999999999999999998753222 22233322111
Q ss_pred CCcccceeecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHH
Q 005389 94 TDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEAR 173 (699)
Q Consensus 94 ~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~ 173 (699)
.+.+. ...+.||||||+.+..... .-.+.
T Consensus 492 ---------------------------------------------~~~~~---~~~~~liDTaG~~~~~~~~---~~~e~ 520 (712)
T PRK09518 492 ---------------------------------------------IVEID---GEDWLFIDTAGIKRRQHKL---TGAEY 520 (712)
T ss_pred ---------------------------------------------EEEEC---CCEEEEEECCCcccCcccc---hhHHH
Confidence 11111 1257899999986432111 10122
Q ss_pred HHHH-HHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 174 IRTM-IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 174 i~~l-v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+..+ ...+++.++ ++++|+++......++ ..++..+...+.++|+|+||+|+++.
T Consensus 521 ~~~~r~~~~i~~ad-vvilViDat~~~s~~~-~~i~~~~~~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 521 YSSLRTQAAIERSE-LALFLFDASQPISEQD-LKVMSMAVDAGRALVLVFNKWDLMDE 576 (712)
T ss_pred HHHHHHHHHhhcCC-EEEEEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEEchhcCCh
Confidence 2222 346778888 6666778877766655 56666666678999999999999753
No 42
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.27 E-value=7e-11 Score=112.96 Aligned_cols=122 Identities=22% Similarity=0.329 Sum_probs=79.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCc--cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
+|+++|..|||||||+|+|++..+.+...+. +|+...
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~----------------------------------------- 39 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLIN----------------------------------------- 39 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEE-----------------------------------------
Confidence 4899999999999999999965554444332 111110
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCe--eEEEEecCCCcccchHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSC--LILAVTPANSDLANSDA 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~--iIL~V~~a~~d~~~~~~ 204 (699)
.+.+. ..+++|||||+..... +.+..+.+..++..|+...+. .+++|++........+
T Consensus 40 ------------~~~~~----~~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~- 99 (170)
T cd01876 40 ------------FFNVN----DKFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEID- 99 (170)
T ss_pred ------------EEEcc----CeEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhH-
Confidence 00111 1689999999865432 344456677788888875432 4556666655433322
Q ss_pred HHHHHhhCCCCCcEEEeecccccCCCc
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
..+.+.+...+.++++|+||+|++.++
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKADKLKKS 126 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEchhcCChH
Confidence 455666666678999999999998654
No 43
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.27 E-value=5.5e-11 Score=112.91 Aligned_cols=75 Identities=24% Similarity=0.295 Sum_probs=50.8
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccC
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
.+.+|||||+.... ......+...+..++...+ ++++|+++.......+ ..+.+.+...+.++++|+||+|+.
T Consensus 46 ~~~i~DtpG~~~~~-----~~~~~~~~~~~~~~~~~~d-~ii~v~d~~~~~~~~~-~~~~~~~~~~~~piiiv~nK~D~~ 118 (157)
T cd01894 46 EFILIDTGGIEPDD-----EGISKEIREQAELAIEEAD-VILFVVDGREGLTPAD-EEIAKYLRKSKKPVILVVNKVDNI 118 (157)
T ss_pred EEEEEECCCCCCch-----hHHHHHHHHHHHHHHHhCC-EEEEEEeccccCCccH-HHHHHHHHhcCCCEEEEEECcccC
Confidence 68999999987542 1334455566667788888 5666666665443333 344455555579999999999997
Q ss_pred CC
Q 005389 229 DR 230 (699)
Q Consensus 229 ~~ 230 (699)
..
T Consensus 119 ~~ 120 (157)
T cd01894 119 KE 120 (157)
T ss_pred Ch
Confidence 54
No 44
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.27 E-value=8.1e-12 Score=109.47 Aligned_cols=48 Identities=44% Similarity=0.639 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHhh
Q 005389 649 QENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNPELYYFLLIC 696 (699)
Q Consensus 649 rE~~e~e~Ir~LI~SYF~IVRk~I~D~VPKAIMhfLVN~~~~~~~~~~ 696 (699)
||+.+++.|+.++.|||+||+|++.|+|||||||||||.++..+..++
T Consensus 1 ~e~~~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l 48 (92)
T PF02212_consen 1 REQREVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSEL 48 (92)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Confidence 689999999999999999999999999999999999999999987765
No 45
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.26 E-value=5.6e-11 Score=121.94 Aligned_cols=128 Identities=17% Similarity=0.302 Sum_probs=85.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
-+|+|||.+|+|||||.|.++|.++.|++.-. +||+-+- +
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~il------------g--------------------------- 113 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRIL------------G--------------------------- 113 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeee------------E---------------------------
Confidence 37999999999999999999999998887654 3333211 1
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCC--CcccchHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN--SDLANSDA 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~--~d~~~~~~ 204 (699)
|.......+.|+||||+.......+...+. .+.+-.+..+.++|++++++ |+. ........
T Consensus 114 ---------------i~ts~eTQlvf~DTPGlvs~~~~r~~~l~~-s~lq~~~~a~q~AD~vvVv~-Das~tr~~l~p~v 176 (379)
T KOG1423|consen 114 ---------------IITSGETQLVFYDTPGLVSKKMHRRHHLMM-SVLQNPRDAAQNADCVVVVV-DASATRTPLHPRV 176 (379)
T ss_pred ---------------EEecCceEEEEecCCcccccchhhhHHHHH-HhhhCHHHHHhhCCEEEEEE-eccCCcCccChHH
Confidence 111122479999999998765443333332 23334566778888555554 444 22333344
Q ss_pred HHHHHhhCCCCCcEEEeecccccCCCccc
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMDRGTD 233 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~~~~~ 233 (699)
+.+.+.+. ..+.|.|+||+|...+...
T Consensus 177 l~~l~~ys--~ips~lvmnkid~~k~k~~ 203 (379)
T KOG1423|consen 177 LHMLEEYS--KIPSILVMNKIDKLKQKRL 203 (379)
T ss_pred HHHHHHHh--cCCceeeccchhcchhhhH
Confidence 67777775 4789999999999876554
No 46
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.26 E-value=5.9e-11 Score=114.74 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
.|++||.+|||||||+|+|+|...
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~ 25 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP 25 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc
Confidence 489999999999999999998764
No 47
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.24 E-value=1.2e-10 Score=120.71 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=81.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCC-ccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHH
Q 005389 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (699)
Q Consensus 44 ~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (699)
...-.+|+|+|.+|+|||||+|+|+|.....++.. .+|+........
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~-------------------------------- 75 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGT-------------------------------- 75 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE--------------------------------
Confidence 34567899999999999999999999987665432 344433221100
Q ss_pred hhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhc--CCCeeEEEEecCCC-cc
Q 005389 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANS-DL 199 (699)
Q Consensus 123 t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~-d~ 199 (699)
. +...++||||||+.+...+. .....+.+.+.+|+. ..+ +||+|...+. ..
T Consensus 76 -------------------~---~g~~i~vIDTPGl~~~~~~~---~~~~~~~~~I~~~l~~~~id-vIL~V~rlD~~r~ 129 (249)
T cd01853 76 -------------------V---DGFKLNIIDTPGLLESVMDQ---RVNRKILSSIKRYLKKKTPD-VVLYVDRLDMYRR 129 (249)
T ss_pred -------------------E---CCeEEEEEECCCcCcchhhH---HHHHHHHHHHHHHHhccCCC-EEEEEEcCCCCCC
Confidence 0 01358999999998653211 123445566677886 344 6777765543 23
Q ss_pred cchH--HHHHHHhhCCC--CCcEEEeecccccCCCcc
Q 005389 200 ANSD--ALQIAGIADPD--GYRTIGIITKLDIMDRGT 232 (699)
Q Consensus 200 ~~~~--~l~l~~~~dp~--g~rti~VlTK~D~~~~~~ 232 (699)
...+ .++.+++.-+. ..++++|+||+|...+..
T Consensus 130 ~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 130 DYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred CHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 3332 23333332221 368999999999986643
No 48
>PRK04213 GTP-binding protein; Provisional
Probab=99.23 E-value=1.8e-10 Score=115.18 Aligned_cols=125 Identities=23% Similarity=0.375 Sum_probs=75.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (699)
-..++|+++|..|+|||||+|+|+|..+ +.+..+ +|+.+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~--------------------------------------- 46 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKP--------------------------------------- 46 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCc---------------------------------------
Confidence 3568999999999999999999999864 332211 11111
Q ss_pred hhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhc-CCC--eeEEEEecCCCccc
Q 005389 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK-QPS--CLILAVTPANSDLA 200 (699)
Q Consensus 124 ~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~-~~~--~iIL~V~~a~~d~~ 200 (699)
..+.+ .++++|||||+...... +....+.++.+...|+. ..+ .++++|+++.....
T Consensus 47 --------------~~~~~-----~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~ 105 (201)
T PRK04213 47 --------------NHYDW-----GDFILTDLPGFGFMSGV--PKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIE 105 (201)
T ss_pred --------------eEEee-----cceEEEeCCcccccccc--CHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccc
Confidence 01111 15899999997433211 12334567777777775 322 25566667653211
Q ss_pred c----------hHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 201 N----------SDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 201 ~----------~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
. .....+.+.+...+.++++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 106 IIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN 145 (201)
T ss_pred cccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc
Confidence 0 11133444444457899999999999753
No 49
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.23 E-value=1.5e-10 Score=129.81 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-+..|++||.+|||||||||+|++..
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~ak 183 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAK 183 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCC
Confidence 35789999999999999999999875
No 50
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.23 E-value=1.7e-10 Score=108.35 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=49.5
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
.++.||||||+....... .........++..++ ++++|+++......... .+.......+.++++|+||+|+
T Consensus 45 ~~~~~~Dt~g~~~~~~~~------~~~~~~~~~~~~~~d-~il~v~~~~~~~~~~~~-~~~~~~~~~~~~~ivv~nK~D~ 116 (163)
T cd00880 45 GPVVLIDTPGIDEAGGLG------REREELARRVLERAD-LILFVVDADLRADEEEE-KLLELLRERGKPVLLVLNKIDL 116 (163)
T ss_pred CcEEEEECCCCCccccch------hhHHHHHHHHHHhCC-EEEEEEeCCCCCCHHHH-HHHHHHHhcCCeEEEEEEcccc
Confidence 479999999987654221 111345566788888 55556666655444332 2344444557899999999999
Q ss_pred CCCc
Q 005389 228 MDRG 231 (699)
Q Consensus 228 ~~~~ 231 (699)
....
T Consensus 117 ~~~~ 120 (163)
T cd00880 117 LPEE 120 (163)
T ss_pred CChh
Confidence 8643
No 51
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.22 E-value=2.5e-10 Score=108.24 Aligned_cols=119 Identities=29% Similarity=0.374 Sum_probs=72.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCcccc-ceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTR-RPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr-~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
+|+++|..++|||||+|+|+|..+...+..++|. .....
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 42 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEE---------------------------------------- 42 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEE----------------------------------------
Confidence 6999999999999999999998653333222111 11000
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (699)
.+.+ ....+++|||||+.+.. .......-.....++.+++ ++++|+++.......+ .++
T Consensus 43 -----------~~~~---~~~~~~i~DtpG~~~~~-----~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~-~~~ 101 (157)
T cd04164 43 -----------SIDI---GGIPVRLIDTAGIRETE-----DEIEKIGIERAREAIEEAD-LVLFVIDASRGLDEED-LEI 101 (157)
T ss_pred -----------EEEe---CCEEEEEEECCCcCCCc-----chHHHHHHHHHHHHHhhCC-EEEEEEECCCCCCHHH-HHH
Confidence 0111 11368999999986542 1122122223445667787 6666667775444444 334
Q ss_pred HHhhCCCCCcEEEeecccccCCC
Q 005389 208 AGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 208 ~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+. ..+.++++|+||+|+.+.
T Consensus 102 ~~~--~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 102 LEL--PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred HHh--hcCCCEEEEEEchhcCCc
Confidence 333 346899999999999864
No 52
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.22 E-value=7.8e-11 Score=113.54 Aligned_cols=116 Identities=17% Similarity=0.240 Sum_probs=70.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
|.|+|+|..|+|||||+|+|++..+.......+|......
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~---------------------------------------- 40 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAF---------------------------------------- 40 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccE----------------------------------------
Confidence 7899999999999999999998876432222222111000
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (699)
.+....+....+++|||||.. ....+...++..++ ++++|++++.... .+....
T Consensus 41 -----------~~~~~~~~~~~~~iiDtpG~~-------------~~~~~~~~~~~~~d-~il~v~d~~~~~~-~~~~~~ 94 (168)
T cd01887 41 -----------EVPAEVLKIPGITFIDTPGHE-------------AFTNMRARGASLTD-IAILVVAADDGVM-PQTIEA 94 (168)
T ss_pred -----------EEecccCCcceEEEEeCCCcH-------------HHHHHHHHHHhhcC-EEEEEEECCCCcc-HHHHHH
Confidence 000000112469999999953 23445556777887 5555556554332 222333
Q ss_pred HHhhCCCCCcEEEeecccccCC
Q 005389 208 AGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 208 ~~~~dp~g~rti~VlTK~D~~~ 229 (699)
...+...+.+.++|+||+|+.+
T Consensus 95 ~~~~~~~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 95 IKLAKAANVPFIVALNKIDKPN 116 (168)
T ss_pred HHHHHHcCCCEEEEEEceeccc
Confidence 3444445789999999999874
No 53
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.22 E-value=1.3e-10 Score=137.79 Aligned_cols=123 Identities=20% Similarity=0.234 Sum_probs=84.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
.+|.|+++|.+|+|||||+|+|+|..+..++..+ +|+..+.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~-------------------------------------- 315 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVS-------------------------------------- 315 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEE--------------------------------------
Confidence 3588999999999999999999998642222211 2222111
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (699)
...... ...+.||||||+.... .++...+.+.+..|+..+| +||+|+++...+...+
T Consensus 316 ---------------~~~~~~-~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~aD-~iL~VvDa~~~~~~~d- 372 (712)
T PRK09518 316 ---------------YDAEWA-GTDFKLVDTGGWEADV-----EGIDSAIASQAQIAVSLAD-AVVFVVDGQVGLTSTD- 372 (712)
T ss_pred ---------------EEEEEC-CEEEEEEeCCCcCCCC-----ccHHHHHHHHHHHHHHhCC-EEEEEEECCCCCCHHH-
Confidence 111111 1258899999986421 2356677788888999998 7777777776655544
Q ss_pred HHHHHhhCCCCCcEEEeecccccCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
..+++.+...+.++|+|+||+|+..
T Consensus 373 ~~i~~~Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 373 ERIVRMLRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred HHHHHHHHhcCCCEEEEEECccccc
Confidence 4566667677899999999999864
No 54
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.22 E-value=1.6e-10 Score=124.63 Aligned_cols=125 Identities=18% Similarity=0.225 Sum_probs=73.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
-++.|++||.+|||||||||+|++..........+|+.|..-.+.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~----------------------------------- 200 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVR----------------------------------- 200 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEE-----------------------------------
Confidence 357899999999999999999998752111122345555322211
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-c--cch
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-L--ANS 202 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~--~~~ 202 (699)
+ .+...++|+||||+....... ..+.....+++.+++ ++++|+++... . ...
T Consensus 201 ----------------~--~~~~~~~i~D~PGli~~a~~~------~gLg~~flrhierad-~ll~VvD~s~~~~~~~~e 255 (329)
T TIGR02729 201 ----------------V--DDGRSFVIADIPGLIEGASEG------AGLGHRFLKHIERTR-VLLHLIDISPLDGRDPIE 255 (329)
T ss_pred ----------------e--CCceEEEEEeCCCcccCCccc------ccHHHHHHHHHHhhC-EEEEEEcCccccccCHHH
Confidence 0 011358999999997543211 123344456677787 66666666532 1 111
Q ss_pred HHHHH---HHhhCC--CCCcEEEeecccccCCC
Q 005389 203 DALQI---AGIADP--DGYRTIGIITKLDIMDR 230 (699)
Q Consensus 203 ~~l~l---~~~~dp--~g~rti~VlTK~D~~~~ 230 (699)
+...+ +..+.+ ...+.++|+||+|+.+.
T Consensus 256 ~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 256 DYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred HHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 11122 223332 36899999999999754
No 55
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.21 E-value=5.3e-11 Score=120.61 Aligned_cols=132 Identities=20% Similarity=0.289 Sum_probs=76.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccC--CccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~--~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
+|+|+|.++|||||++|+|+|.+.++.+. ..||+......-
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~------------------------------------- 44 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG------------------------------------- 44 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE-------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee-------------------------------------
Confidence 69999999999999999999999887764 345544321110
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH--
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (699)
.+. ...+++|||||+.+.... +.++...+.+.+......++ ++|+|++.. .++..+.
T Consensus 45 --------------~~~---g~~v~VIDTPGl~d~~~~--~~~~~~~i~~~l~~~~~g~h-a~llVi~~~-r~t~~~~~~ 103 (212)
T PF04548_consen 45 --------------EVD---GRQVTVIDTPGLFDSDGS--DEEIIREIKRCLSLCSPGPH-AFLLVIPLG-RFTEEDREV 103 (212)
T ss_dssp --------------EET---TEEEEEEE--SSEETTEE--HHHHHHHHHHHHHHTTT-ES-EEEEEEETT-B-SHHHHHH
T ss_pred --------------eec---ceEEEEEeCCCCCCCccc--HHHHHHHHHHHHHhccCCCe-EEEEEEecC-cchHHHHHH
Confidence 001 136999999999766432 23333344443333445677 566667776 6654443
Q ss_pred HHHHHhhCCC--CCcEEEeecccccCCCcccHHHHhc
Q 005389 205 LQIAGIADPD--GYRTIGIITKLDIMDRGTDARNLLL 239 (699)
Q Consensus 205 l~l~~~~dp~--g~rti~VlTK~D~~~~~~~~~~~l~ 239 (699)
++....+-+. .+++|+|+|..|...+.. ..+++.
T Consensus 104 l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~-~~~~l~ 139 (212)
T PF04548_consen 104 LELLQEIFGEEIWKHTIVVFTHADELEDDS-LEDYLK 139 (212)
T ss_dssp HHHHHHHHCGGGGGGEEEEEEEGGGGTTTT-HHHHHH
T ss_pred HHHHHHHccHHHHhHhhHHhhhcccccccc-HHHHHh
Confidence 4444444332 478999999999987654 444443
No 56
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.21 E-value=2.1e-10 Score=114.83 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=43.5
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
+++++|||||+...... .++.++.+ .+.+.+ ++++|.+ .++...+ ..+++.+...+.++++|+||+|+
T Consensus 52 ~~l~l~DtpG~~~~~~~-----~~~~l~~~---~~~~~d-~~l~v~~--~~~~~~d-~~~~~~l~~~~~~~ilV~nK~D~ 119 (197)
T cd04104 52 PNVTLWDLPGIGSTAFP-----PDDYLEEM---KFSEYD-FFIIISS--TRFSSND-VKLAKAIQCMGKKFYFVRTKVDR 119 (197)
T ss_pred CCceEEeCCCCCcccCC-----HHHHHHHh---CccCcC-EEEEEeC--CCCCHHH-HHHHHHHHHhCCCEEEEEecccc
Confidence 47999999998754211 11222221 134555 5555544 3444444 45556665568999999999999
Q ss_pred CCC
Q 005389 228 MDR 230 (699)
Q Consensus 228 ~~~ 230 (699)
..+
T Consensus 120 ~~~ 122 (197)
T cd04104 120 DLS 122 (197)
T ss_pred hhh
Confidence 654
No 57
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.21 E-value=3e-10 Score=119.70 Aligned_cols=149 Identities=14% Similarity=0.273 Sum_probs=88.5
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccC-CccccceEEEEeeccCCCcccce
Q 005389 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGE 100 (699)
Q Consensus 22 ~~~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~ 100 (699)
.+.|..++.+|.+ .+....+|+|+|.+|+||||++|+|+|..+..++. ..+|..++...
T Consensus 21 q~~l~~~l~~l~~--------~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~------------ 80 (313)
T TIGR00991 21 QTKLLELLGKLKE--------EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS------------ 80 (313)
T ss_pred HHHHHHHHHhccc--------ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE------------
Confidence 3445555555443 34778899999999999999999999997533322 12233322111
Q ss_pred eecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHH
Q 005389 101 FLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMS 180 (699)
Q Consensus 101 ~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~ 180 (699)
... ....+++|||||+.+.. .+.+...+.+..
T Consensus 81 ---------------------------------------~~~---~G~~l~VIDTPGL~d~~------~~~e~~~~~ik~ 112 (313)
T TIGR00991 81 ---------------------------------------RTR---AGFTLNIIDTPGLIEGG------YINDQAVNIIKR 112 (313)
T ss_pred ---------------------------------------EEE---CCeEEEEEECCCCCchH------HHHHHHHHHHHH
Confidence 000 11368999999998642 233444566666
Q ss_pred Hhc--CCCeeEEEEecCCC-cccc--hHHHHHHHhhCCC--CCcEEEeecccccCCC-cccHHHHhc
Q 005389 181 YIK--QPSCLILAVTPANS-DLAN--SDALQIAGIADPD--GYRTIGIITKLDIMDR-GTDARNLLL 239 (699)
Q Consensus 181 yi~--~~~~iIL~V~~a~~-d~~~--~~~l~l~~~~dp~--g~rti~VlTK~D~~~~-~~~~~~~l~ 239 (699)
|+. .++ +||+|...+. .+.. ...++.++.+-+. ..++|+|+|+.|..++ +....+++.
T Consensus 113 ~l~~~g~D-vVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~ 178 (313)
T TIGR00991 113 FLLGKTID-VLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFS 178 (313)
T ss_pred HhhcCCCC-EEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHH
Confidence 665 455 6677754332 2222 2334444444322 4789999999999864 334445543
No 58
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.21 E-value=2.5e-10 Score=128.21 Aligned_cols=122 Identities=27% Similarity=0.344 Sum_probs=81.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCC-ccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
.|.|++||.+|+|||||+|+|+|.....++.. .+|+-... +
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~------------~-------------------------- 42 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIY------------G-------------------------- 42 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceE------------E--------------------------
Confidence 37899999999999999999999864222221 12221110 0
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
.+.+.+ ..+.||||||+.... .++...++..+..++..++ ++|+|+++.......+ .
T Consensus 43 -------------~~~~~~---~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad-~il~vvd~~~~~~~~~-~ 99 (435)
T PRK00093 43 -------------EAEWLG---REFILIDTGGIEPDD-----DGFEKQIREQAELAIEEAD-VILFVVDGRAGLTPAD-E 99 (435)
T ss_pred -------------EEEECC---cEEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCC-EEEEEEECCCCCCHHH-H
Confidence 111111 368999999997521 2355667788888999998 6666667766554443 3
Q ss_pred HHHHhhCCCCCcEEEeecccccCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.+++.+...+.++++|+||+|..+
T Consensus 100 ~~~~~l~~~~~piilv~NK~D~~~ 123 (435)
T PRK00093 100 EIAKILRKSNKPVILVVNKVDGPD 123 (435)
T ss_pred HHHHHHHHcCCcEEEEEECccCcc
Confidence 455555555899999999999654
No 59
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.18 E-value=3.2e-10 Score=108.54 Aligned_cols=66 Identities=21% Similarity=0.374 Sum_probs=40.8
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch--HHHHHHHhhCCCCCcEEEeecccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYRTIGIITKLD 226 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~~~~dp~g~rti~VlTK~D 226 (699)
.+.+|||||.. .+......++..++ ++++|+++..+...+ +.+.+++... ..++++|+||+|
T Consensus 52 ~~~~~DtpG~~-------------~~~~~~~~~~~~ad-~ii~V~d~~~~~~~~~~~~~~~~~~~~--~~~~ilv~NK~D 115 (164)
T cd04171 52 RLGFIDVPGHE-------------KFIKNMLAGAGGID-LVLLVVAADEGIMPQTREHLEILELLG--IKRGLVVLTKAD 115 (164)
T ss_pred EEEEEECCChH-------------HHHHHHHhhhhcCC-EEEEEEECCCCccHhHHHHHHHHHHhC--CCcEEEEEECcc
Confidence 68999999942 23344556788888 555566665433222 2223333321 248999999999
Q ss_pred cCCC
Q 005389 227 IMDR 230 (699)
Q Consensus 227 ~~~~ 230 (699)
+...
T Consensus 116 l~~~ 119 (164)
T cd04171 116 LVDE 119 (164)
T ss_pred ccCH
Confidence 9753
No 60
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.18 E-value=4.9e-10 Score=124.13 Aligned_cols=120 Identities=19% Similarity=0.279 Sum_probs=69.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcc-c-CCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPR-G-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~-~-~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
++.|++||.+|||||||||+|++.. |. + ...+|..|..-.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~------------------------------------ 199 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGV------------------------------------ 199 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEE------------------------------------
Confidence 4589999999999999999999876 22 1 122444442111
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc---ccc
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD---LAN 201 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d---~~~ 201 (699)
+.+ ++...++|+||||+....... ..+.....+++.+++ ++++|++++.. -..
T Consensus 200 ---------------v~~--~~~~~~~laD~PGliega~~~------~gLg~~fLrhier~~-llI~VID~s~~~~~dp~ 255 (424)
T PRK12297 200 ---------------VET--DDGRSFVMADIPGLIEGASEG------VGLGHQFLRHIERTR-VIVHVIDMSGSEGRDPI 255 (424)
T ss_pred ---------------EEE--eCCceEEEEECCCCccccccc------chHHHHHHHHHhhCC-EEEEEEeCCccccCChH
Confidence 111 111358999999997532111 122223345566777 55556665421 111
Q ss_pred hHHHHH---HHhhCC--CCCcEEEeecccccC
Q 005389 202 SDALQI---AGIADP--DGYRTIGIITKLDIM 228 (699)
Q Consensus 202 ~~~l~l---~~~~dp--~g~rti~VlTK~D~~ 228 (699)
.+...+ +..+.+ .+.+.++|+||+|+.
T Consensus 256 e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 256 EDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred HHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 111222 333333 368999999999973
No 61
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.16 E-value=3.7e-10 Score=110.73 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=44.9
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
..++||||||.. .+......++..++.++ +|+++........ ..+...+...+.++++|+||+|+
T Consensus 62 ~~~~liDtpG~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~-~~~~~~~~~~~~~i~iv~nK~D~ 126 (189)
T cd00881 62 RRVNFIDTPGHE-------------DFSSEVIRGLSVSDGAI-LVVDANEGVQPQT-REHLRIAREGGLPIIVAINKIDR 126 (189)
T ss_pred EEEEEEeCCCcH-------------HHHHHHHHHHHhcCEEE-EEEECCCCCcHHH-HHHHHHHHHCCCCeEEEEECCCC
Confidence 479999999964 23445667788888555 4556554433222 33444444467999999999999
Q ss_pred CC
Q 005389 228 MD 229 (699)
Q Consensus 228 ~~ 229 (699)
..
T Consensus 127 ~~ 128 (189)
T cd00881 127 VG 128 (189)
T ss_pred cc
Confidence 86
No 62
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.16 E-value=7.3e-10 Score=106.96 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=71.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||++++++..+.+... .|.. +..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~--~t~~-~~~--------------------------------------- 40 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG--NTIG-VDF--------------------------------------- 40 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC--Cccc-eEE---------------------------------------
Confidence 4679999999999999999998876522211 1110 000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc---hH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SD 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~ 203 (699)
....+.+.+ ....+.|+||||- +....+...+++.++++++++ ++....+- ..
T Consensus 41 ---------~~~~~~~~~-~~~~l~i~D~~G~-------------~~~~~~~~~~~~~~d~~llv~-d~~~~~s~~~~~~ 96 (165)
T cd01864 41 ---------TMKTLEIEG-KRVKLQIWDTAGQ-------------ERFRTITQSYYRSANGAIIAY-DITRRSSFESVPH 96 (165)
T ss_pred ---------EEEEEEECC-EEEEEEEEECCCh-------------HHHHHHHHHHhccCCEEEEEE-ECcCHHHHHhHHH
Confidence 000111111 1136899999992 345667788899998666554 44432211 12
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
++..+....+.+.+.++|.||+|+...
T Consensus 97 ~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 97 WIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccc
Confidence 333344444557889999999999753
No 63
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.15 E-value=2.6e-10 Score=123.23 Aligned_cols=212 Identities=21% Similarity=0.296 Sum_probs=104.7
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCC-----CCcccCCccccceEEEEeeccCCCccc
Q 005389 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRD-----FLPRGNDICTRRPLVLQLLQTKTDEEY 98 (699)
Q Consensus 24 ~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~-----~lP~~~~~~Tr~p~~~~l~~~~~~~~~ 98 (699)
.+-....++++.+..+.. .. -.|+|+|..|+|||||||||-|.. -.|+|.--+|..|+
T Consensus 16 ~~~~~~s~i~~~l~~~~~---~~-l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~------------- 78 (376)
T PF05049_consen 16 NLQEVVSKIREALKDIDN---AP-LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPT------------- 78 (376)
T ss_dssp -HHHHHHHHHHHHHHHHH------EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-E-------------
T ss_pred CHHHHHHHHHHHHHHhhc---Cc-eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCe-------------
Confidence 455677788887776652 22 269999999999999999998853 11222222222221
Q ss_pred ceeecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHH
Q 005389 99 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMI 178 (699)
Q Consensus 99 ~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv 178 (699)
....|+.|+++|||+||+.... . ..+.-+.++
T Consensus 79 ------------------------------------------~Y~~p~~pnv~lWDlPG~gt~~---f--~~~~Yl~~~- 110 (376)
T PF05049_consen 79 ------------------------------------------PYPHPKFPNVTLWDLPGIGTPN---F--PPEEYLKEV- 110 (376)
T ss_dssp ------------------------------------------EEE-SS-TTEEEEEE--GGGSS-------HHHHHHHT-
T ss_pred ------------------------------------------eCCCCCCCCCeEEeCCCCCCCC---C--CHHHHHHHc-
Confidence 1234667899999999986442 1 111122221
Q ss_pred HHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc-CCCcccHHHHhcCCccccccCEEEEEcCCh
Q 005389 179 MSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI-MDRGTDARNLLLGKVIPLRLGYVGVVNRSQ 257 (699)
Q Consensus 179 ~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~-~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~ 257 (699)
-+..-| .+++|.+ ..+...+ ..+++++...|++..+|-||+|. +..... .+ +
T Consensus 111 --~~~~yD-~fiii~s--~rf~~nd-v~La~~i~~~gK~fyfVRTKvD~Dl~~~~~------~~---------------p 163 (376)
T PF05049_consen 111 --KFYRYD-FFIIISS--ERFTEND-VQLAKEIQRMGKKFYFVRTKVDSDLYNERR------RK---------------P 163 (376)
T ss_dssp --TGGG-S-EEEEEES--SS--HHH-HHHHHHHHHTT-EEEEEE--HHHHHHHHHC------C----------------S
T ss_pred --cccccC-EEEEEeC--CCCchhh-HHHHHHHHHcCCcEEEEEecccccHhhhhc------cC---------------C
Confidence 123445 4444443 3455545 68999999999999999999996 211100 00 0
Q ss_pred hhhhccccHHHHHHHHHHhcCC-----CCcc--cCc-cccCCcchHHHHHHHHHHHHHH----hhhhhHHHH-HHHHHHH
Q 005389 258 EDIMFNRSIKDALVAEEKFFRS-----RPVY--NGL-ADRCGVPQLAKKLNQILVQHIK----AILPGLKSR-ISSALVS 324 (699)
Q Consensus 258 ~d~~~~~s~~~~~~~E~~fF~~-----~~~~--~~~-~~~~Gi~~L~~~L~~~L~~~i~----~~LP~l~~~-i~~~l~~ 324 (699)
........+++.+.+-.+-+.. -++| ++. ...+..+.|.++|.+-|..|-+ .+||.+..+ |+.+...
T Consensus 164 ~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~fllsLp~is~~~I~kKk~~ 243 (376)
T PF05049_consen 164 RTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHAFLLSLPNISEAAIEKKKES 243 (376)
T ss_dssp TT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHHHHHHS---SHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHHH
Confidence 0001111122222222222222 1222 233 3568899999999998887754 467777543 4444433
Q ss_pred HHH
Q 005389 325 VAK 327 (699)
Q Consensus 325 ~~~ 327 (699)
+++
T Consensus 244 lk~ 246 (376)
T PF05049_consen 244 LKQ 246 (376)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 64
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.15 E-value=5e-10 Score=107.88 Aligned_cols=116 Identities=14% Similarity=0.161 Sum_probs=71.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+|+|.+++|||||+++|++..+.+.....++.....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----------------------------------------- 42 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFAT----------------------------------------- 42 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEE-----------------------------------------
Confidence 579999999999999999999987633322111110000
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---H
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---A 204 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~ 204 (699)
..+.+.+ ....+.|+||||. ..+..+...|+..++++|+++. +.....-.+ +
T Consensus 43 ----------~~~~~~~-~~~~~~l~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d-~~~~~s~~~~~~~ 97 (165)
T cd01868 43 ----------RSIQIDG-KTIKAQIWDTAGQ-------------ERYRAITSAYYRGAVGALLVYD-ITKKQTFENVERW 97 (165)
T ss_pred ----------EEEEECC-EEEEEEEEeCCCh-------------HHHHHHHHHHHCCCCEEEEEEE-CcCHHHHHHHHHH
Confidence 0111111 1135889999994 2455667788888886655544 432211122 2
Q ss_pred HHHHHhhCCCCCcEEEeecccccCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
+..++...+.+.++++|.||+|+.+
T Consensus 98 ~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 98 LKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred HHHHHHhCCCCCeEEEEEECccccc
Confidence 3334444555689999999999864
No 65
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.14 E-value=3.4e-10 Score=106.33 Aligned_cols=63 Identities=21% Similarity=0.298 Sum_probs=39.2
Q ss_pred EEeCCCCC-CCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCC
Q 005389 152 LVDLPGIT-KVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 152 LVDlPGl~-~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
+|||||=. .. ..+..-+.....+++ +|++|.+|+.....-. -.+++.+ .+++|||+||+|+..
T Consensus 40 ~IDTPGEyiE~----------~~~y~aLi~ta~dad-~V~ll~dat~~~~~~p-P~fa~~f---~~pvIGVITK~Dl~~ 103 (143)
T PF10662_consen 40 TIDTPGEYIEN----------PRFYHALIVTAQDAD-VVLLLQDATEPRSVFP-PGFASMF---NKPVIGVITKIDLPS 103 (143)
T ss_pred EEECChhheeC----------HHHHHHHHHHHhhCC-EEEEEecCCCCCccCC-chhhccc---CCCEEEEEECccCcc
Confidence 59999942 22 123333344555776 7777777775433221 2344444 489999999999984
No 66
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.13 E-value=6.7e-10 Score=105.77 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=43.1
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhc--CCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D 226 (699)
++.||||||+....... .+ ..+...|+. ..+ ++++|+++..... ...+..++...+.++++|+||+|
T Consensus 44 ~~~liDtpG~~~~~~~~----~~---~~~~~~~~~~~~~d-~vi~v~d~~~~~~---~~~~~~~~~~~~~~~iiv~NK~D 112 (158)
T cd01879 44 EIEIVDLPGTYSLSPYS----ED---EKVARDFLLGEKPD-LIVNVVDATNLER---NLYLTLQLLELGLPVVVALNMID 112 (158)
T ss_pred EEEEEECCCccccCCCC----hh---HHHHHHHhcCCCCc-EEEEEeeCCcchh---HHHHHHHHHHcCCCEEEEEehhh
Confidence 68999999986432111 11 133445564 777 5555666654221 13344444445789999999999
Q ss_pred cCCC
Q 005389 227 IMDR 230 (699)
Q Consensus 227 ~~~~ 230 (699)
+.+.
T Consensus 113 l~~~ 116 (158)
T cd01879 113 EAEK 116 (158)
T ss_pred hccc
Confidence 9754
No 67
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.13 E-value=1.3e-09 Score=109.24 Aligned_cols=123 Identities=16% Similarity=0.199 Sum_probs=68.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+|+|.+++|||||++.+++.+| +....++|...+.. .
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~~------------~---------------------------- 40 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLYR------------P---------------------------- 40 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CcccCCccccccce------------e----------------------------
Confidence 699999999999999999999876 33222222111000 0
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHH-
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI- 207 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l- 207 (699)
.+.+.+ ....+.||||||....+.. ...........+++.++++|++ .+.+...+-..+..+
T Consensus 41 ----------~i~~~~-~~~~l~i~Dt~G~~~~~~~-----~~~e~~~~~~~~~~~ad~iilv-~D~~~~~S~~~~~~~~ 103 (198)
T cd04142 41 ----------AVVLSG-RVYDLHILDVPNMQRYPGT-----AGQEWMDPRFRGLRNSRAFILV-YDICSPDSFHYVKLLR 103 (198)
T ss_pred ----------EEEECC-EEEEEEEEeCCCcccCCcc-----chhHHHHHHHhhhccCCEEEEE-EECCCHHHHHHHHHHH
Confidence 011111 1135889999998543211 0112233455678888855554 444432211111112
Q ss_pred --HHhh---CCCCCcEEEeecccccCC
Q 005389 208 --AGIA---DPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 208 --~~~~---dp~g~rti~VlTK~D~~~ 229 (699)
+... ...+.|+++|.||+|+..
T Consensus 104 ~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 104 QQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred HHHHHhcccCCCCCCEEEEEECccccc
Confidence 2222 245789999999999964
No 68
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.13 E-value=5.7e-10 Score=106.82 Aligned_cols=115 Identities=19% Similarity=0.233 Sum_probs=69.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+++|.+++|||||+|+|++.++.+......|......
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSK----------------------------------------- 40 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEE-----------------------------------------
Confidence 699999999999999999999986432221111111000
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---H
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---L 205 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l 205 (699)
.+.+.+. ...+.+|||||- .....++..+++.+++ +++|.+.+..-.-.+. +
T Consensus 41 ----------~~~~~~~-~~~l~~~D~~G~-------------~~~~~~~~~~~~~~~~-ii~v~d~~~~~s~~~~~~~~ 95 (161)
T cd01861 41 ----------TMYLEDK-TVRLQLWDTAGQ-------------ERFRSLIPSYIRDSSV-AVVVYDITNRQSFDNTDKWI 95 (161)
T ss_pred ----------EEEECCE-EEEEEEEECCCc-------------HHHHHHHHHHhccCCE-EEEEEECcCHHHHHHHHHHH
Confidence 1111110 125899999993 2456677889999985 5555555432211222 2
Q ss_pred HHHHhhCCCCCcEEEeecccccCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.......+.+.++++|+||+|+..
T Consensus 96 ~~~~~~~~~~~~iilv~nK~D~~~ 119 (161)
T cd01861 96 DDVRDERGNDVIIVLVGNKTDLSD 119 (161)
T ss_pred HHHHHhCCCCCEEEEEEEChhccc
Confidence 222222233589999999999964
No 69
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.13 E-value=5.7e-10 Score=108.32 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=71.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
+.+|+|||.+++|||||++++++..+-+......+....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~----------------------------------------- 42 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG----------------------------------------- 42 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE-----------------------------------------
Confidence 358999999999999999999998763332221111100
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
...+.+.+. ...+.||||||. +.+..+...|++.++++|+ |.+++....-.+..+
T Consensus 43 ----------~~~~~~~~~-~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~il~-v~d~~~~~s~~~~~~ 97 (168)
T cd01866 43 ----------ARMITIDGK-QIKLQIWDTAGQ-------------ESFRSITRSYYRGAAGALL-VYDITRRETFNHLTS 97 (168)
T ss_pred ----------EEEEEECCE-EEEEEEEECCCc-------------HHHHHHHHHHhccCCEEEE-EEECCCHHHHHHHHH
Confidence 001111110 125899999992 3556677789999986555 555553222223333
Q ss_pred HHHhh---CCCCCcEEEeecccccCC
Q 005389 207 IAGIA---DPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 207 l~~~~---dp~g~rti~VlTK~D~~~ 229 (699)
+..++ ...+.++++|.||+|+..
T Consensus 98 ~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 98 WLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred HHHHHHHhCCCCCcEEEEEECccccc
Confidence 33322 224688999999999974
No 70
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.12 E-value=7.5e-10 Score=131.23 Aligned_cols=121 Identities=23% Similarity=0.314 Sum_probs=74.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
.+|+++|.+|+|||||+|+|+|... .++.-+ +|.-
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve------------------------------------------- 39 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVE------------------------------------------- 39 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEe-------------------------------------------
Confidence 5799999999999999999999864 222211 1110
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhc--CCCeeEEEEecCCCcccchHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~~~ 204 (699)
..+..+..+ ...+.+|||||+.+......+...++. +...|+. .+| +++.|+|++....+
T Consensus 40 ----------~k~g~~~~~-~~~i~lvDtPG~ysl~~~~~~~s~~E~---i~~~~l~~~~aD-~vI~VvDat~ler~--- 101 (772)
T PRK09554 40 ----------RKEGQFSTT-DHQVTLVDLPGTYSLTTISSQTSLDEQ---IACHYILSGDAD-LLINVVDASNLERN--- 101 (772)
T ss_pred ----------eEEEEEEcC-ceEEEEEECCCccccccccccccHHHH---HHHHHHhccCCC-EEEEEecCCcchhh---
Confidence 011111111 135899999999765322111223333 2344554 666 66777777653322
Q ss_pred HHHHHhhCCCCCcEEEeecccccCCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+.+..++...+.|+++|+||+|+.++
T Consensus 102 l~l~~ql~e~giPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 102 LYLTLQLLELGIPCIVALNMLDIAEK 127 (772)
T ss_pred HHHHHHHHHcCCCEEEEEEchhhhhc
Confidence 44555666678999999999998753
No 71
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.12 E-value=5.9e-10 Score=105.27 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=68.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+++|.+++|||||+|+|++..+.+... .++..-.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~-~t~~~~~------------------------------------------ 37 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYK-STIGVDF------------------------------------------ 37 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccC-Cceeeee------------------------------------------
Confidence 369999999999999999999987643311 1110000
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA--- 204 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~--- 204 (699)
....+.+.+ ....+.++|+||. ..+..+...++++.+++| +|+++...-.-...
T Consensus 38 --------~~~~~~~~~-~~~~~~l~D~~g~-------------~~~~~~~~~~~~~~d~ii-~v~d~~~~~~~~~~~~~ 94 (159)
T cd00154 38 --------KSKTIEIDG-KTVKLQIWDTAGQ-------------ERFRSITPSYYRGAHGAI-LVYDITNRESFENLDKW 94 (159)
T ss_pred --------EEEEEEECC-EEEEEEEEecCCh-------------HHHHHHHHHHhcCCCEEE-EEEECCCHHHHHHHHHH
Confidence 000111110 1136899999994 245567778899998554 44454432222222
Q ss_pred HHHHHhhCCCCCcEEEeecccccC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
+.........+.++++|+||+|+.
T Consensus 95 ~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 95 LKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHhCCCCCcEEEEEEccccc
Confidence 222233332468999999999997
No 72
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=3.4e-09 Score=115.39 Aligned_cols=128 Identities=29% Similarity=0.292 Sum_probs=81.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
.-++||++|.+|+|||||||+|+..+.--++.. .+++++
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv-----------~GTTRD------------------------------ 305 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPV-----------PGTTRD------------------------------ 305 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCC-----------CCcchh------------------------------
Confidence 458999999999999999999999875322222 133322
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
.|...+. ++...+.|+||.|+-+.. . ..++..=-+...+-+..+| +|++|++|+.....++ +
T Consensus 306 -----------aiea~v~-~~G~~v~L~DTAGiRe~~-~---~~iE~~gI~rA~k~~~~ad-vi~~vvda~~~~t~sd-~ 367 (531)
T KOG1191|consen 306 -----------AIEAQVT-VNGVPVRLSDTAGIREES-N---DGIEALGIERARKRIERAD-VILLVVDAEESDTESD-L 367 (531)
T ss_pred -----------hheeEee-cCCeEEEEEecccccccc-C---ChhHHHhHHHHHHHHhhcC-EEEEEecccccccccc-h
Confidence 2222222 333579999999998722 1 1223222334556777887 8888888865555544 4
Q ss_pred HHHHhhCCC------------CCcEEEeecccccCCCcc
Q 005389 206 QIAGIADPD------------GYRTIGIITKLDIMDRGT 232 (699)
Q Consensus 206 ~l~~~~dp~------------g~rti~VlTK~D~~~~~~ 232 (699)
.+++.+... ..|.|.|.||.|+..+..
T Consensus 368 ~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~ 406 (531)
T KOG1191|consen 368 KIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP 406 (531)
T ss_pred HHHHHHHHhccceEEEeccccccceEEEechhhccCccc
Confidence 444433322 368889999999987644
No 73
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.09 E-value=1.5e-09 Score=104.58 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=68.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+|||..++|||||++.+++..+-|.... |..+....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~--~~~~~~~~---------------------------------------- 39 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLS--TYALTLYK---------------------------------------- 39 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCC--ceeeEEEE----------------------------------------
Confidence 699999999999999999998876333211 11100000
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---HH
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---AL 205 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l 205 (699)
..+.+.+ ....+.|+||||- +.+..+...|+++++++|++ .+.+....-.+ ++
T Consensus 40 ---------~~~~~~~-~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~~~ 95 (161)
T cd04124 40 ---------HNAKFEG-KTILVDFWDTAGQ-------------ERFQTMHASYYHKAHACILV-FDVTRKITYKNLSKWY 95 (161)
T ss_pred ---------EEEEECC-EEEEEEEEeCCCc-------------hhhhhhhHHHhCCCCEEEEE-EECCCHHHHHHHHHHH
Confidence 0001111 1136889999993 35566778899999855555 45443322222 22
Q ss_pred HHHHhhCCCCCcEEEeecccccC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
..++... ...++++|+||+|+.
T Consensus 96 ~~i~~~~-~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 96 EELREYR-PEIPCIVVANKIDLD 117 (161)
T ss_pred HHHHHhC-CCCcEEEEEECccCc
Confidence 3333332 258999999999984
No 74
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.09 E-value=3.6e-10 Score=128.06 Aligned_cols=119 Identities=24% Similarity=0.309 Sum_probs=78.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+++|.+|+|||||+|+|+|... -+|. .| +.+-....+.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q-~VgN-----wp------GvTVEkkeg~--------------------------- 44 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ-KVGN-----WP------GVTVEKKEGK--------------------------- 44 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc-eecC-----CC------CeeEEEEEEE---------------------------
Confidence 4599999999999999999999863 2222 11 1111111111
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhc-CCCeeEEEEecCCCcccchHHHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK-QPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~-~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
..... ..+++|||||+.+-.... .+ +..+++|+. ++-++|+.|+||.+-..+ +.
T Consensus 45 --------------~~~~~-~~i~ivDLPG~YSL~~~S----~D---E~Var~~ll~~~~D~ivnVvDAtnLeRn---Ly 99 (653)
T COG0370 45 --------------LKYKG-HEIEIVDLPGTYSLTAYS----ED---EKVARDFLLEGKPDLIVNVVDATNLERN---LY 99 (653)
T ss_pred --------------EEecC-ceEEEEeCCCcCCCCCCC----ch---HHHHHHHHhcCCCCEEEEEcccchHHHH---HH
Confidence 11111 258999999998764321 12 234556776 332588888888765544 66
Q ss_pred HHHhhCCCCCcEEEeecccccCCC
Q 005389 207 IAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 207 l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+.-++-..|.++|+++|++|...+
T Consensus 100 ltlQLlE~g~p~ilaLNm~D~A~~ 123 (653)
T COG0370 100 LTLQLLELGIPMILALNMIDEAKK 123 (653)
T ss_pred HHHHHHHcCCCeEEEeccHhhHHh
Confidence 777777789999999999999754
No 75
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.09 E-value=2.4e-09 Score=103.49 Aligned_cols=115 Identities=15% Similarity=0.299 Sum_probs=68.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+|+|..++|||||+|+|++..+.+.....++.....
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~------------------------------------------ 39 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT------------------------------------------ 39 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEE------------------------------------------
Confidence 69999999999999999999987532221111110000
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH---
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL--- 205 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l--- 205 (699)
..+.+.+ ....+.++|+||.. ....+...|+++++++|+++ +++....-....
T Consensus 40 ---------~~~~~~~-~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~-d~~~~~~~~~~~~~~ 95 (172)
T cd01862 40 ---------KEVTVDD-KLVTLQIWDTAGQE-------------RFQSLGVAFYRGADCCVLVY-DVTNPKSFESLDSWR 95 (172)
T ss_pred ---------EEEEECC-EEEEEEEEeCCChH-------------HHHhHHHHHhcCCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 0111111 11257899999942 34456678899998666555 443322111111
Q ss_pred -HHHHhhC---CCCCcEEEeecccccCC
Q 005389 206 -QIAGIAD---PDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 -~l~~~~d---p~g~rti~VlTK~D~~~ 229 (699)
.+...+. +.+.++++|+||+|+..
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 96 DEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HHHHHhcCccCCCCceEEEEEECccccc
Confidence 1233333 33789999999999985
No 76
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.08 E-value=2.4e-09 Score=104.73 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=42.1
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhh----CCCCCcEEEeecc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA----DPDGYRTIGIITK 224 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----dp~g~rti~VlTK 224 (699)
.+.|||||| .+....+...|+++++++|++ .+.....+-.+...+...+ ...+.++++|.||
T Consensus 64 ~~~i~Dt~G-------------~~~~~~~~~~~~~~~~~~i~v-~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 129 (180)
T cd04127 64 HLQLWDTAG-------------QERFRSLTTAFFRDAMGFLLI-FDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNK 129 (180)
T ss_pred EEEEEeCCC-------------hHHHHHHHHHHhCCCCEEEEE-EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Confidence 588999999 235677788899999855555 4444322212222222222 1235789999999
Q ss_pred cccCC
Q 005389 225 LDIMD 229 (699)
Q Consensus 225 ~D~~~ 229 (699)
+|+.+
T Consensus 130 ~Dl~~ 134 (180)
T cd04127 130 ADLED 134 (180)
T ss_pred ccchh
Confidence 99975
No 77
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.08 E-value=1.7e-09 Score=103.65 Aligned_cols=115 Identities=20% Similarity=0.239 Sum_probs=67.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+|+|.+++|||||++++++..|. ....++++.. +.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~-------------~~---------------------------- 39 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDS-------------YR---------------------------- 39 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhh-------------EE----------------------------
Confidence 47999999999999999999987652 2111111100 00
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA--- 204 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~--- 204 (699)
..+.+.+ ....+.||||||.. .++.+...|+++++++++++...+ ..+-.+.
T Consensus 40 ----------~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~~~~ilv~d~~~-~~s~~~~~~~ 94 (163)
T cd04136 40 ----------KQIEVDG-QQCMLEILDTAGTE-------------QFTAMRDLYIKNGQGFVLVYSITS-QSSFNDLQDL 94 (163)
T ss_pred ----------EEEEECC-EEEEEEEEECCCcc-------------ccchHHHHHhhcCCEEEEEEECCC-HHHHHHHHHH
Confidence 0111111 11358899999953 344566678899986666654322 2111122
Q ss_pred HHHHHhh-CCCCCcEEEeecccccCC
Q 005389 205 LQIAGIA-DPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 l~l~~~~-dp~g~rti~VlTK~D~~~ 229 (699)
+..+... ...+.++++|.||+|+.+
T Consensus 95 ~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 95 REQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred HHHHHHhcCCCCCCEEEEEECccccc
Confidence 2222222 234689999999999864
No 78
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.08 E-value=1.2e-09 Score=106.72 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=43.7
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
..+.||||||.. .+..++..|++.++++|+ |.++.......+ +.....+...+.++++|+||+|+
T Consensus 67 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~ad~~i~-v~D~~~~~~~~~-~~~~~~~~~~~~~iiiv~NK~Dl 131 (179)
T cd01890 67 YLLNLIDTPGHV-------------DFSYEVSRSLAACEGALL-LVDATQGVEAQT-LANFYLALENNLEIIPVINKIDL 131 (179)
T ss_pred EEEEEEECCCCh-------------hhHHHHHHHHHhcCeEEE-EEECCCCccHhh-HHHHHHHHHcCCCEEEEEECCCC
Confidence 468899999964 234566778889985555 555554333222 23223333457889999999998
Q ss_pred CC
Q 005389 228 MD 229 (699)
Q Consensus 228 ~~ 229 (699)
.+
T Consensus 132 ~~ 133 (179)
T cd01890 132 PS 133 (179)
T ss_pred Cc
Confidence 64
No 79
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.08 E-value=1.5e-09 Score=105.22 Aligned_cols=117 Identities=16% Similarity=0.219 Sum_probs=70.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||++++++.+|-+. ..+++....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~-~~~t~~~~~----------------------------------------- 40 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS-FISTIGIDF----------------------------------------- 40 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc-cccCccceE-----------------------------------------
Confidence 46899999999999999999999876221 111111000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (699)
....+.+.+ ....+.|+||||.. ....+...|+++++++|+++ +++....-..
T Consensus 41 ---------~~~~~~~~~-~~~~l~l~D~~g~~-------------~~~~~~~~~~~~ad~~i~v~-d~~~~~s~~~~~~ 96 (167)
T cd01867 41 ---------KIRTIELDG-KKIKLQIWDTAGQE-------------RFRTITTAYYRGAMGIILVY-DITDEKSFENIRN 96 (167)
T ss_pred ---------EEEEEEECC-EEEEEEEEeCCchH-------------HHHHHHHHHhCCCCEEEEEE-ECcCHHHHHhHHH
Confidence 000111111 11368999999932 34456667889998555554 4433222112
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.+..++...+.+.++++|.||+|+.+
T Consensus 97 ~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 97 WMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHHHHHhCCCCCcEEEEEECccccc
Confidence 22233344455789999999999975
No 80
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.07 E-value=1.4e-09 Score=105.14 Aligned_cols=68 Identities=21% Similarity=0.203 Sum_probs=43.6
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc---hHHHHHHHhhCCCCCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~~l~l~~~~dp~g~rti~VlTK~ 225 (699)
.+.||||||.. ....+...|+++.+++++++. ......- .+++..++...+...++++|.||+
T Consensus 51 ~~~l~Dt~g~~-------------~~~~~~~~~~~~~~~~l~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 116 (165)
T cd01865 51 KLQIWDTAGQE-------------RYRTITTAYYRGAMGFILMYD-ITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKC 116 (165)
T ss_pred EEEEEECCChH-------------HHHHHHHHHccCCcEEEEEEE-CCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECc
Confidence 58899999932 445667788999986555544 3322111 122333344444567899999999
Q ss_pred ccCCC
Q 005389 226 DIMDR 230 (699)
Q Consensus 226 D~~~~ 230 (699)
|+.+.
T Consensus 117 Dl~~~ 121 (165)
T cd01865 117 DMEDE 121 (165)
T ss_pred ccCcc
Confidence 99753
No 81
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.07 E-value=1.3e-09 Score=108.32 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=44.3
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc---hHHHHHHHhhCCCCCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~~l~l~~~~dp~g~rti~VlTK~ 225 (699)
.+.||||||- +.+..+...|++.++++| +|.+++....- ..++..+....+.+.++++|+||.
T Consensus 51 ~~~i~Dt~G~-------------~~~~~~~~~~~~~ad~~i-~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~ 116 (191)
T cd04112 51 KLQIWDTAGQ-------------ERFRSVTHAYYRDAHALL-LLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKA 116 (191)
T ss_pred EEEEEeCCCc-------------HHHHHhhHHHccCCCEEE-EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcc
Confidence 5889999992 245556677889998555 44555432111 122344555566678999999999
Q ss_pred ccCC
Q 005389 226 DIMD 229 (699)
Q Consensus 226 D~~~ 229 (699)
|+..
T Consensus 117 Dl~~ 120 (191)
T cd04112 117 DMSG 120 (191)
T ss_pred cchh
Confidence 9964
No 82
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.1e-09 Score=105.76 Aligned_cols=122 Identities=21% Similarity=0.281 Sum_probs=78.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHh
Q 005389 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (699)
Q Consensus 44 ~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (699)
.+..-.||++|++|+||+|||+...--.| -+ .|...
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~f-d~---------------------~YqAT---------------------- 54 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKF-DN---------------------TYQAT---------------------- 54 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhh-cc---------------------cccce----------------------
Confidence 34557899999999999999999976654 11 11110
Q ss_pred hhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEE--ecCCCcccc
Q 005389 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAV--TPANSDLAN 201 (699)
Q Consensus 124 ~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V--~~a~~d~~~ 201 (699)
.|++...-++.+.+. ...|.||||.| ++.++.++-.|++++..+|++. .+.+....+
T Consensus 55 -------IGiDFlskt~~l~d~-~vrLQlWDTAG-------------QERFrslipsY~Rds~vaviVyDit~~~Sfe~t 113 (221)
T KOG0094|consen 55 -------IGIDFLSKTMYLEDR-TVRLQLWDTAG-------------QERFRSLIPSYIRDSSVAVIVYDITDRNSFENT 113 (221)
T ss_pred -------eeeEEEEEEEEEcCc-EEEEEEEeccc-------------HHHHhhhhhhhccCCeEEEEEEeccccchHHHH
Confidence 111111122333332 24799999999 7899999999999998555542 233333444
Q ss_pred hHHHHHHHhhCCC-CCcEEEeecccccCCC
Q 005389 202 SDALQIAGIADPD-GYRTIGIITKLDIMDR 230 (699)
Q Consensus 202 ~~~l~l~~~~dp~-g~rti~VlTK~D~~~~ 230 (699)
..++.-++.-... +..+++|-||.||.++
T Consensus 114 ~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 114 SKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred HHHHHHHHhccCCCceEEEEEcccccccch
Confidence 4444444433333 4677788899999986
No 83
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.06 E-value=1.3e-09 Score=114.97 Aligned_cols=137 Identities=20% Similarity=0.256 Sum_probs=77.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccc-cceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT-RRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~T-r~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.|+|||..|+|||||+|+|++..+.+....... ..+. .
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~----~------------------------------------- 44 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHI----D------------------------------------- 44 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCCcccccc----C-------------------------------------
Confidence 699999999999999999999987655432110 0000 0
Q ss_pred CCCCCccccceEEEEecC-CccceEEEeCCCCCCCCC-CCCchHHHHHHHHHHHHHh------------c--CCCeeEEE
Q 005389 128 GGNKGVSDKQIRLKIFSP-HVLDITLVDLPGITKVPV-GEQPADIEARIRTMIMSYI------------K--QPSCLILA 191 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p-~~~~LtLVDlPGl~~~~~-~~q~~di~~~i~~lv~~yi------------~--~~~~iIL~ 191 (699)
...+.......+... ....++||||||+.+.-. .++-..+...+.+....|+ . +.++++++
T Consensus 45 ---~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~ 121 (276)
T cd01850 45 ---KTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYF 121 (276)
T ss_pred ---CceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEE
Confidence 000000111111111 113699999999975421 1122233333333323333 2 23444444
Q ss_pred EecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCc
Q 005389 192 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 192 V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
+.+....+...| +++++.+.. +.++|+|+||+|++...
T Consensus 122 i~~~~~~l~~~D-~~~lk~l~~-~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 122 IEPTGHGLKPLD-IEFMKRLSK-RVNIIPVIAKADTLTPE 159 (276)
T ss_pred EeCCCCCCCHHH-HHHHHHHhc-cCCEEEEEECCCcCCHH
Confidence 555445665555 677788764 78999999999998643
No 84
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.06 E-value=1.9e-09 Score=104.29 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=71.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
-+|+|+|..++|||||++++++..|.+.... ++......
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~-t~~~~~~~---------------------------------------- 41 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPH-TIGVEFGT---------------------------------------- 41 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCc-ccceeEEE----------------------------------------
Confidence 4699999999999999999998876432211 11111000
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---HH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DA 204 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~ 204 (699)
..+.+.+. ...+.||||||. +.++.+...|+++++++|+++...+ ..+-. ++
T Consensus 42 ----------~~~~~~~~-~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~~~~ilv~d~~~-~~s~~~~~~~ 96 (166)
T cd04122 42 ----------RIIEVNGQ-KIKLQIWDTAGQ-------------ERFRAVTRSYYRGAAGALMVYDITR-RSTYNHLSSW 96 (166)
T ss_pred ----------EEEEECCE-EEEEEEEECCCc-------------HHHHHHHHHHhcCCCEEEEEEECCC-HHHHHHHHHH
Confidence 01111111 136899999993 3556677889999997666654433 21111 22
Q ss_pred HHHHHhhCCCCCcEEEeecccccCCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+...+.......++++|.||+|+...
T Consensus 97 ~~~~~~~~~~~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 97 LTDARNLTNPNTVIFLIGNKADLEAQ 122 (166)
T ss_pred HHHHHHhCCCCCeEEEEEECcccccc
Confidence 23333444446789999999999643
No 85
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.06 E-value=1.8e-09 Score=103.44 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=42.7
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhC--CCCCcEEEeeccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIAD--PDGYRTIGIITKL 225 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d--p~g~rti~VlTK~ 225 (699)
..+.|+||||. +....+...|++.++.+++++ ++.....-.....+...+. ..+.++++|+||+
T Consensus 51 ~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~~v~v~-d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~ 116 (162)
T cd04106 51 VRLMLWDTAGQ-------------EEFDAITKAYYRGAQACILVF-STTDRESFEAIESWKEKVEAECGDIPMVLVQTKI 116 (162)
T ss_pred EEEEEeeCCch-------------HHHHHhHHHHhcCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 36899999992 355667788999998655554 4332211111112222221 1368999999999
Q ss_pred ccCCC
Q 005389 226 DIMDR 230 (699)
Q Consensus 226 D~~~~ 230 (699)
|+...
T Consensus 117 Dl~~~ 121 (162)
T cd04106 117 DLLDQ 121 (162)
T ss_pred hcccc
Confidence 99753
No 86
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.05 E-value=2.4e-09 Score=106.22 Aligned_cols=25 Identities=40% Similarity=0.686 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~l 73 (699)
+|+|+|..++|||||++++++..|.
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~ 26 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFL 26 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcC
Confidence 6999999999999999999988763
No 87
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.05 E-value=1.6e-09 Score=103.75 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=42.5
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---HHHHHHHh---hCCCCCcEEEee
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DALQIAGI---ADPDGYRTIGII 222 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~---~dp~g~rti~Vl 222 (699)
.+.|+||||.. ..+.+...|+++++++|+ |+++.....-. ..+..+.. +...+.++++|+
T Consensus 46 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~-v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~ 111 (162)
T cd04157 46 SFTAFDMSGQG-------------KYRGLWEHYYKNIQGIIF-VIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFA 111 (162)
T ss_pred EEEEEECCCCH-------------hhHHHHHHHHccCCEEEE-EEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEE
Confidence 68999999943 445667788999985554 45554322111 11222211 123478999999
Q ss_pred cccccCCC
Q 005389 223 TKLDIMDR 230 (699)
Q Consensus 223 TK~D~~~~ 230 (699)
||+|+.+.
T Consensus 112 NK~Dl~~~ 119 (162)
T cd04157 112 NKMDLPDA 119 (162)
T ss_pred eCccccCC
Confidence 99999753
No 88
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.05 E-value=2.1e-09 Score=103.12 Aligned_cols=115 Identities=18% Similarity=0.229 Sum_probs=70.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+|+|..++|||||+++|++..+.+......+...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~-------------------------------------------- 37 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEF-------------------------------------------- 37 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeE--------------------------------------------
Confidence 699999999999999999998876333221111000
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---H
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---L 205 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l 205 (699)
....+.+.+ ....+.|||+||. +.+..+...+++.++++|+++ +......-..+ +
T Consensus 38 -------~~~~~~~~~-~~~~l~l~D~~G~-------------~~~~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~~ 95 (161)
T cd04113 38 -------GSKIIRVGG-KRVKLQIWDTAGQ-------------ERFRSVTRSYYRGAAGALLVY-DITNRTSFEALPTWL 95 (161)
T ss_pred -------EEEEEEECC-EEEEEEEEECcch-------------HHHHHhHHHHhcCCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 000111111 1136899999993 245566778889998655554 44433222222 2
Q ss_pred HHHHhhCCCCCcEEEeecccccCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
...+.+...+.++++|+||+|+..
T Consensus 96 ~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 96 SDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred HHHHHhCCCCCeEEEEEEchhcch
Confidence 333344445789999999999975
No 89
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.05 E-value=2.4e-09 Score=102.94 Aligned_cols=68 Identities=19% Similarity=0.294 Sum_probs=43.1
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---HHHHHHHhhCCCCCcEEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~dp~g~rti~VlTK 224 (699)
..+.++||||. +....+...++.+++++|+ |.+.+....-. .++....... .+.+.++|+||
T Consensus 52 ~~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~ii~-v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK 116 (164)
T cd04101 52 VELFIFDSAGQ-------------ELYSDMVSNYWESPSVFIL-VYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNK 116 (164)
T ss_pred EEEEEEECCCH-------------HHHHHHHHHHhCCCCEEEE-EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 36899999992 3556778889999985554 44544322111 1122223332 35899999999
Q ss_pred cccCCC
Q 005389 225 LDIMDR 230 (699)
Q Consensus 225 ~D~~~~ 230 (699)
+|+.+.
T Consensus 117 ~Dl~~~ 122 (164)
T cd04101 117 MDLADK 122 (164)
T ss_pred cccccc
Confidence 998643
No 90
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.05 E-value=5.1e-10 Score=111.09 Aligned_cols=69 Identities=22% Similarity=0.324 Sum_probs=46.8
Q ss_pred CCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecc
Q 005389 145 PHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 145 p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK 224 (699)
.....++|+||||.. .+...+...+..+| ++++|+++..+...+. .+.++.+...+.+.|+|+||
T Consensus 67 ~~~~~i~~iDtPG~~-------------~f~~~~~~~~~~~D-~ailvVda~~g~~~~~-~~~l~~~~~~~~p~ivvlNK 131 (188)
T PF00009_consen 67 ENNRKITLIDTPGHE-------------DFIKEMIRGLRQAD-IAILVVDANDGIQPQT-EEHLKILRELGIPIIVVLNK 131 (188)
T ss_dssp ESSEEEEEEEESSSH-------------HHHHHHHHHHTTSS-EEEEEEETTTBSTHHH-HHHHHHHHHTT-SEEEEEET
T ss_pred ccccceeeccccccc-------------ceeecccceecccc-cceeeeeccccccccc-ccccccccccccceEEeeee
Confidence 334579999999942 23333445588888 5566667776655443 45555665667889999999
Q ss_pred cccC
Q 005389 225 LDIM 228 (699)
Q Consensus 225 ~D~~ 228 (699)
+|+.
T Consensus 132 ~D~~ 135 (188)
T PF00009_consen 132 MDLI 135 (188)
T ss_dssp CTSS
T ss_pred ccch
Confidence 9999
No 91
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.04 E-value=2.1e-09 Score=103.20 Aligned_cols=115 Identities=14% Similarity=0.218 Sum_probs=68.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+|+|..++|||||+++|++..+.+... ++.... +
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~-~t~~~~-------------~------------------------------ 37 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYL-PTIGID-------------Y------------------------------ 37 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC-Ccccee-------------E------------------------------
Confidence 69999999999999999999988632111 110000 0
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---HHH
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DAL 205 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~l 205 (699)
....+.+.+ ....+.|+||||.. ....+...|++.++++|+++ +.+...+-. .++
T Consensus 38 -------~~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~-D~~~~~s~~~~~~~~ 95 (168)
T cd04119 38 -------GVKKVSVRN-KEVRVNFFDLSGHP-------------EYLEVRNEFYKDTQGVLLVY-DVTDRQSFEALDSWL 95 (168)
T ss_pred -------EEEEEEECC-eEEEEEEEECCccH-------------HHHHHHHHHhccCCEEEEEE-ECCCHHHHHhHHHHH
Confidence 000111111 12368999999942 34456677888998666654 444321111 122
Q ss_pred HHHH-hhCC----CCCcEEEeecccccCC
Q 005389 206 QIAG-IADP----DGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~-~~dp----~g~rti~VlTK~D~~~ 229 (699)
..+. ...+ .+.++++|.||+|+.+
T Consensus 96 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 96 KEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred HHHHHhccccccCCCceEEEEEEchhccc
Confidence 2222 2332 4689999999999974
No 92
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.03 E-value=8.2e-10 Score=107.12 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEcCCCCcHHHHHHHHhCCCC
Q 005389 52 VVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 52 VvG~~ssGKSSLLnaL~G~~~ 72 (699)
++|.+|||||||+|+|+|.++
T Consensus 1 iiG~~~~GKStll~~l~~~~~ 21 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP 21 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc
Confidence 589999999999999999875
No 93
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.03 E-value=2.3e-09 Score=102.73 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=42.6
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHh---hCCCCCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGI---ADPDGYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~---~dp~g~rti~VlTK~ 225 (699)
.+.++|+||. ..+..+...+++.++.+|+++. .....+-..+.++... ....+.++++|+||+
T Consensus 50 ~~~l~D~~G~-------------~~~~~~~~~~~~~~d~~ilv~d-~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~ 115 (164)
T smart00175 50 KLQIWDTAGQ-------------ERFRSITSSYYRGAVGALLVYD-ITNRESFENLKNWLKELREYADPNVVIMLVGNKS 115 (164)
T ss_pred EEEEEECCCh-------------HHHHHHHHHHhCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEch
Confidence 5889999993 2445667788899986666654 4432222222222222 222478999999999
Q ss_pred ccCC
Q 005389 226 DIMD 229 (699)
Q Consensus 226 D~~~ 229 (699)
|+..
T Consensus 116 D~~~ 119 (164)
T smart00175 116 DLED 119 (164)
T ss_pred hccc
Confidence 9764
No 94
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.03 E-value=4.6e-09 Score=100.18 Aligned_cols=116 Identities=18% Similarity=0.248 Sum_probs=68.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+|+|.+++|||||+++|++..|... ..+++... +.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~-~~~t~~~~-------------~~---------------------------- 39 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDE-YDPTIEDS-------------YR---------------------------- 39 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCC-cCCcchhe-------------EE----------------------------
Confidence 4799999999999999999998876321 11111000 00
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-ccch-HHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LANS-DAL 205 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~~-~~l 205 (699)
..+.+.+. ...+.+|||||.. .++.+...|++.++++++++...+.. +... ..+
T Consensus 40 ----------~~~~~~~~-~~~~~i~Dt~G~~-------------~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~ 95 (162)
T cd04138 40 ----------KQVVIDGE-TCLLDILDTAGQE-------------EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYR 95 (162)
T ss_pred ----------EEEEECCE-EEEEEEEECCCCc-------------chHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 01111111 1247889999942 45567778999998666665432211 1111 111
Q ss_pred -HHHHhhCCCCCcEEEeecccccCC
Q 005389 206 -QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 -~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.+.+.....+.++++|.||+|+..
T Consensus 96 ~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 96 EQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred HHHHHhcCCCCCCEEEEEECccccc
Confidence 223333345789999999999975
No 95
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.03 E-value=2.5e-09 Score=102.58 Aligned_cols=115 Identities=15% Similarity=0.191 Sum_probs=67.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+|+|..++|||||+|+|++.++.+.. .+++......
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~----------------------------------------- 40 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQ-ESTIGAAFLT----------------------------------------- 40 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceeEEE-----------------------------------------
Confidence 6999999999999999999999874411 1111100000
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH---
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL--- 205 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l--- 205 (699)
..+.+.. ....+.|||+||- +....+...|++.++++|+++...+ .-.-..+.
T Consensus 41 ---------~~v~~~~-~~~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~ 96 (163)
T cd01860 41 ---------QTVNLDD-TTVKFEIWDTAGQ-------------ERYRSLAPMYYRGAAAAIVVYDITS-EESFEKAKSWV 96 (163)
T ss_pred ---------EEEEECC-EEEEEEEEeCCch-------------HHHHHHHHHHhccCCEEEEEEECcC-HHHHHHHHHHH
Confidence 0111111 1135889999992 2345556678888986666654332 21111222
Q ss_pred HHHHhhCCCCCcEEEeecccccCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
..++.......+.++|+||+|+.+
T Consensus 97 ~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 97 KELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred HHHHHhCCCCCeEEEEEECccccc
Confidence 222333334578999999999874
No 96
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.03 E-value=5.3e-09 Score=105.26 Aligned_cols=69 Identities=13% Similarity=0.252 Sum_probs=46.5
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-ccc-hHHHHHHHhhCCCCCcEEEeeccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LAN-SDALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~-~~~l~l~~~~dp~g~rti~VlTK~ 225 (699)
..+.||||+|- +.++.+...|+++++++|+++...+.+ +.+ ..++..++.....+.++++|.||+
T Consensus 49 v~l~iwDtaGq-------------e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~ 115 (202)
T cd04120 49 IRLQIWDTAGQ-------------ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKL 115 (202)
T ss_pred EEEEEEeCCCc-------------hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 46899999993 356778889999999766655433221 111 122344555555678999999999
Q ss_pred ccCC
Q 005389 226 DIMD 229 (699)
Q Consensus 226 D~~~ 229 (699)
|+.+
T Consensus 116 DL~~ 119 (202)
T cd04120 116 DCET 119 (202)
T ss_pred cccc
Confidence 9864
No 97
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.03 E-value=2.2e-09 Score=103.58 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=42.5
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---HHHHHHhhCCCCCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~dp~g~rti~VlTK~ 225 (699)
.+.||||||.. ....+...|+++++++|+++ +++..-+-.. ++...+.....+.+.++|.||+
T Consensus 52 ~~~i~D~~G~~-------------~~~~~~~~~~~~~~~ii~v~-d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~ 117 (166)
T cd01869 52 KLQIWDTAGQE-------------RFRTITSSYYRGAHGIIIVY-DVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 117 (166)
T ss_pred EEEEEECCCcH-------------hHHHHHHHHhCcCCEEEEEE-ECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 58899999932 44566678889998666655 4433211111 2223333333468999999999
Q ss_pred ccCC
Q 005389 226 DIMD 229 (699)
Q Consensus 226 D~~~ 229 (699)
|+..
T Consensus 118 Dl~~ 121 (166)
T cd01869 118 DLTD 121 (166)
T ss_pred hccc
Confidence 9864
No 98
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.03 E-value=5.5e-09 Score=100.90 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
+|+++|..++|||||+|+|.|..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~ 25 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY 25 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999999874
No 99
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.03 E-value=5.2e-09 Score=101.11 Aligned_cols=117 Identities=18% Similarity=0.268 Sum_probs=70.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccc-cceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT-RRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~T-r~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
.+++|+|+|..++|||||+++|++..+.+. .+++. .....
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~-------------------------------------- 46 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPG-QGATIGVDFMI-------------------------------------- 46 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeEEEE--------------------------------------
Confidence 358899999999999999999997765332 21111 00000
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc---
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN--- 201 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~--- 201 (699)
..+.+.+ ....+.++|+||.. ....+...|+..++++|+++ +......-
T Consensus 47 -------------~~~~~~~-~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~ 98 (169)
T cd04114 47 -------------KTVEIKG-EKIKLQIWDTAGQE-------------RFRSITQSYYRSANALILTY-DITCEESFRCL 98 (169)
T ss_pred -------------EEEEECC-EEEEEEEEECCCcH-------------HHHHHHHHHhcCCCEEEEEE-ECcCHHHHHHH
Confidence 0111111 11257899999942 34455567899998655554 44322111
Q ss_pred hHHHHHHHhhCCCCCcEEEeecccccCC
Q 005389 202 SDALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 202 ~~~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
..++..++.+...+.+.++|.||+|+.+
T Consensus 99 ~~~~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 99 PEWLREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred HHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 1223334555555788999999999864
No 100
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.02 E-value=4.4e-09 Score=104.44 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=41.9
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc---hHHHHHHHhhC---CCCCcEEEee
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDALQIAGIAD---PDGYRTIGII 222 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~~l~l~~~~d---p~g~rti~Vl 222 (699)
.+.||||||.. .++.+...|++.++++|+++ +.+...+- ..++..+..+. +...++|+|.
T Consensus 48 ~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~~ilv~-d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvg 113 (190)
T cd04144 48 MLEVLDTAGQE-------------EYTALRDQWIREGEGFILVY-SITSRSTFERVERFREQIQRVKDESAADVPIMIVG 113 (190)
T ss_pred EEEEEECCCch-------------hhHHHHHHHHHhCCEEEEEE-ECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 58999999942 44556667999998666555 43322111 12222233332 2467999999
Q ss_pred cccccCC
Q 005389 223 TKLDIMD 229 (699)
Q Consensus 223 TK~D~~~ 229 (699)
||+|+.+
T Consensus 114 NK~Dl~~ 120 (190)
T cd04144 114 NKCDKVY 120 (190)
T ss_pred EChhccc
Confidence 9999864
No 101
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.02 E-value=4.9e-09 Score=101.55 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=42.2
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH----HHHHHHhhCCCCCcEEEeecc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD----ALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~----~l~l~~~~dp~g~rti~VlTK 224 (699)
.+.+|||||... .+.....++..++.+++ |.+.+....-.. +...++...+ +.++++|+||
T Consensus 48 ~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~~il-v~d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK 112 (166)
T cd01893 48 PTTIVDTSSRPQ-------------DRANLAAEIRKANVICL-VYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNK 112 (166)
T ss_pred EEEEEeCCCchh-------------hhHHHhhhcccCCEEEE-EEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEc
Confidence 689999999542 22344567788885555 445543222221 2334454443 6899999999
Q ss_pred cccCCC
Q 005389 225 LDIMDR 230 (699)
Q Consensus 225 ~D~~~~ 230 (699)
+|+.+.
T Consensus 113 ~Dl~~~ 118 (166)
T cd01893 113 SDLRDG 118 (166)
T ss_pred hhcccc
Confidence 999754
No 102
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=2.1e-09 Score=112.59 Aligned_cols=168 Identities=17% Similarity=0.232 Sum_probs=107.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcc---cCCccccceEEEEeeccCCCcccceeec-CCCccccChhHHHHHHHH
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPR---GNDICTRRPLVLQLLQTKTDEEYGEFLH-LPGKRFYDFSEIRREIQA 121 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~---~~~~~Tr~p~~~~l~~~~~~~~~~~~~~-~~g~~~~d~~~i~~~i~~ 121 (699)
..|.|.++|..|.||||+|+.|++.++ |. |..++|.+-+.+-. +.+....-|..+- .+. ..|..+..-
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dy-pg~riGpEPTtd~Fi~vM~-G~~e~~ipGnal~vd~~---~pF~gL~~F--- 128 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDY-PGLRIGPEPTTDRFIAVMH-GDEEGSIPGNALVVDAK---KPFRGLNKF--- 128 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCC-CccccCCCCCcceeEEEEe-cCcccccCCceeeecCC---Cchhhhhhh---
Confidence 579999999999999999999999986 53 55667766654433 2222111111111 111 122222211
Q ss_pred HhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc
Q 005389 122 QTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN 201 (699)
Q Consensus 122 ~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~ 201 (699)
+.+|-..-.+.+...+-...+++|||||+-+... |.....-.+...+..|+.++|-|||+..++.-|++.
T Consensus 129 --------G~aflnRf~csqmp~~vLe~vtiVdtPGILsgeK--QrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsd 198 (532)
T KOG1954|consen 129 --------GNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEK--QRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISD 198 (532)
T ss_pred --------HHHHHHHHHHhcCChhhhhheeeeccCcccccch--hcccccCChHHHHHHHHHhccEEEEEechhhccccH
Confidence 1222223334455555566899999999986532 222222346778889999999777777776677665
Q ss_pred hHHHHHHHhhCCCCCcEEEeecccccCCCcc
Q 005389 202 SDALQIAGIADPDGYRTIGIITKLDIMDRGT 232 (699)
Q Consensus 202 ~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~ 232 (699)
.- -+.+..+......+-+|+||.|.++...
T Consensus 199 Ef-~~vi~aLkG~EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 199 EF-KRVIDALKGHEDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred HH-HHHHHHhhCCcceeEEEeccccccCHHH
Confidence 33 5677888888889999999999997643
No 103
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.01 E-value=8.3e-09 Score=103.42 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=42.0
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhh-------CCCCCcEEE
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA-------DPDGYRTIG 220 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~-------dp~g~rti~ 220 (699)
..+.||||||- +.++.+...|+++++++|+++. .+...+-..+..+...+ .....++++
T Consensus 50 ~~l~l~Dt~G~-------------~~~~~~~~~~~~~a~~~ilv~D-~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piil 115 (201)
T cd04107 50 VRLQLWDIAGQ-------------ERFGGMTRVYYRGAVGAIIVFD-VTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLL 115 (201)
T ss_pred EEEEEEECCCc-------------hhhhhhHHHHhCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEE
Confidence 36899999994 2456677889999996666554 33221111111111111 124578999
Q ss_pred eecccccCC
Q 005389 221 IITKLDIMD 229 (699)
Q Consensus 221 VlTK~D~~~ 229 (699)
|.||.|+.+
T Consensus 116 v~NK~Dl~~ 124 (201)
T cd04107 116 LANKCDLKK 124 (201)
T ss_pred EEECCCccc
Confidence 999999974
No 104
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.01 E-value=2.9e-09 Score=100.69 Aligned_cols=68 Identities=21% Similarity=0.195 Sum_probs=42.0
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHh-h---CCCCCcEEEeecc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGI-A---DPDGYRTIGIITK 224 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~-~---dp~g~rti~VlTK 224 (699)
.+.++||||.. .++.+...|+..++.++ +|.++.....-......... + ...+.+.++|+||
T Consensus 45 ~~~~~D~~g~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 110 (159)
T cd04159 45 TLKVWDLGGQP-------------RFRSMWERYCRGVNAIV-YVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNK 110 (159)
T ss_pred EEEEEECCCCH-------------hHHHHHHHHHhcCCEEE-EEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeC
Confidence 58999999942 45566778899998544 55555432211111111111 1 1246799999999
Q ss_pred cccCCC
Q 005389 225 LDIMDR 230 (699)
Q Consensus 225 ~D~~~~ 230 (699)
.|+.+.
T Consensus 111 ~D~~~~ 116 (159)
T cd04159 111 NDLPGA 116 (159)
T ss_pred ccccCC
Confidence 998754
No 105
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.01 E-value=4.7e-09 Score=118.89 Aligned_cols=125 Identities=16% Similarity=0.240 Sum_probs=80.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccC-CccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
.+|+|||.+|+||||++|+|+|...+.++. ..+|.....+..
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~------------------------------------- 161 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEG------------------------------------- 161 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEE-------------------------------------
Confidence 479999999999999999999998666543 234433321110
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhc--CCCeeEEEEecCCCc---ccc
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSD---LAN 201 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d---~~~ 201 (699)
.+ ....+.||||||+.+.... ....+.+...+..|+. .++ ++|+|...+.. ...
T Consensus 162 --------------~i---dG~~L~VIDTPGL~dt~~d---q~~neeILk~Ik~~Lsk~gpD-VVLlV~RLd~~~~D~eD 220 (763)
T TIGR00993 162 --------------LV---QGVKIRVIDTPGLKSSASD---QSKNEKILSSVKKFIKKNPPD-IVLYVDRLDMQTRDSND 220 (763)
T ss_pred --------------EE---CCceEEEEECCCCCccccc---hHHHHHHHHHHHHHHhcCCCC-EEEEEEeCCCccccHHH
Confidence 00 0125899999999876322 1223455555666776 355 77777654422 222
Q ss_pred hHHHHHHHhhCCC--CCcEEEeecccccCCC
Q 005389 202 SDALQIAGIADPD--GYRTIGIITKLDIMDR 230 (699)
Q Consensus 202 ~~~l~l~~~~dp~--g~rti~VlTK~D~~~~ 230 (699)
..+++.+..+-.. ..++|+|+|++|.+.+
T Consensus 221 ~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 221 LPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 2345555555443 4899999999999964
No 106
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.01 E-value=2.4e-09 Score=102.98 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
+|+|+|..+||||||+|++++..+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~ 25 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF 25 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 699999999999999999998876
No 107
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.01 E-value=2.9e-09 Score=102.12 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=42.3
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---H-HHHHhhCCCCCcEEEeecc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---L-QIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l-~l~~~~dp~g~rti~VlTK 224 (699)
.+.++||||.. .+..+...|++..+++|+++. ......-... . .+.+.....+.++++|+||
T Consensus 51 ~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~ilv~d-~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK 116 (164)
T cd04145 51 ILDILDTAGQE-------------EFSAMREQYMRTGEGFLLVFS-VTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNK 116 (164)
T ss_pred EEEEEECCCCc-------------chhHHHHHHHhhCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeC
Confidence 58899999953 334566778899986666654 3322111111 1 2223334457899999999
Q ss_pred cccCC
Q 005389 225 LDIMD 229 (699)
Q Consensus 225 ~D~~~ 229 (699)
+|+..
T Consensus 117 ~Dl~~ 121 (164)
T cd04145 117 ADLEH 121 (164)
T ss_pred ccccc
Confidence 99864
No 108
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.01 E-value=8e-09 Score=103.32 Aligned_cols=67 Identities=12% Similarity=0.156 Sum_probs=41.2
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---H-HHHHhhCCCCCcEEEeecc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---L-QIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l-~l~~~~dp~g~rti~VlTK 224 (699)
.+.|+||||.. .+..+...|+..++++|++ .++.....-.+. + .+.......+.++|+|+||
T Consensus 48 ~l~i~D~~G~~-------------~~~~~~~~~~~~ad~vilv-~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 113 (198)
T cd04147 48 TLDILDTSGSY-------------SFPAMRKLSIQNSDAFALV-YAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNK 113 (198)
T ss_pred EEEEEECCCch-------------hhhHHHHHHhhcCCEEEEE-EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEc
Confidence 68899999954 2334455688889855555 454433222222 1 1222223357899999999
Q ss_pred cccCC
Q 005389 225 LDIMD 229 (699)
Q Consensus 225 ~D~~~ 229 (699)
+|+..
T Consensus 114 ~Dl~~ 118 (198)
T cd04147 114 ADSLE 118 (198)
T ss_pred ccccc
Confidence 99865
No 109
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.00 E-value=8.4e-09 Score=103.30 Aligned_cols=117 Identities=19% Similarity=0.202 Sum_probs=68.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|||+.++|||||++.+++..|.+ .. .+|-. +.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~-~~-~~t~~---~~-------------------------------------- 42 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG-SY-ITTIG---VD-------------------------------------- 42 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-Cc-Ccccc---ce--------------------------------------
Confidence 5689999999999999999999887521 11 11100 00
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
.....+.+.+ ....+.||||||- +.++.+...|+++++++|+++ ++.....-.+...
T Consensus 43 --------~~~~~~~~~~-~~~~l~l~D~~G~-------------~~~~~~~~~~~~~a~~iilv~-D~~~~~s~~~~~~ 99 (199)
T cd04110 43 --------FKIRTVEING-ERVKLQIWDTAGQ-------------ERFRTITSTYYRGTHGVIVVY-DVTNGESFVNVKR 99 (199)
T ss_pred --------eEEEEEEECC-EEEEEEEEeCCCc-------------hhHHHHHHHHhCCCcEEEEEE-ECCCHHHHHHHHH
Confidence 0001111111 1135889999993 245566778999998555554 4433222122222
Q ss_pred HHHhhC--CCCCcEEEeecccccCC
Q 005389 207 IAGIAD--PDGYRTIGIITKLDIMD 229 (699)
Q Consensus 207 l~~~~d--p~g~rti~VlTK~D~~~ 229 (699)
+...+. ....+.++|.||+|+..
T Consensus 100 ~~~~i~~~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 100 WLQEIEQNCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred HHHHHHHhCCCCCEEEEEECccccc
Confidence 222221 22578899999999864
No 110
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.00 E-value=5.3e-09 Score=100.18 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=67.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+|+|.+++|||||+|+|++..+.+......+.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---------------------------------------------- 35 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGV---------------------------------------------- 35 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccc----------------------------------------------
Confidence 6899999999999999999988753221110000
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---H
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---L 205 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l 205 (699)
+.....+.+. .....+.|+|+||.. ....+...+++.++++|+++ +.....+-... +
T Consensus 36 -----~~~~~~~~~~-~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~ 95 (161)
T cd01863 36 -----DFKVKTLTVD-GKKVKLAIWDTAGQE-------------RFRTLTSSYYRGAQGVILVY-DVTRRDTFTNLETWL 95 (161)
T ss_pred -----eEEEEEEEEC-CEEEEEEEEECCCch-------------hhhhhhHHHhCCCCEEEEEE-ECCCHHHHHhHHHHH
Confidence 0000011111 112368999999942 33445567788888555554 44432222222 2
Q ss_pred HHH-HhhCCCCCcEEEeecccccCC
Q 005389 206 QIA-GIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~-~~~dp~g~rti~VlTK~D~~~ 229 (699)
..+ +.....+.+.++|+||+|+..
T Consensus 96 ~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 96 NELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred HHHHHhCCCCCCcEEEEEECCcccc
Confidence 222 233445788999999999973
No 111
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.00 E-value=8.6e-09 Score=100.58 Aligned_cols=115 Identities=20% Similarity=0.257 Sum_probs=68.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|++||+.++|||||++++++..| +....+++..-.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~------------------------------------------- 37 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVDF------------------------------------------- 37 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEE-------------------------------------------
Confidence 599999999999999999999876 222211111000
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHH
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIA 208 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~ 208 (699)
....+.+.+ ....+.||||||. +....+...|++.++. +++|.++.....-.....+.
T Consensus 38 -------~~~~~~~~~-~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~ad~-~ilv~d~~~~~s~~~~~~~~ 95 (170)
T cd04108 38 -------EMERFEILG-VPFSLQLWDTAGQ-------------ERFKCIASTYYRGAQA-IIIVFDLTDVASLEHTRQWL 95 (170)
T ss_pred -------EEEEEEECC-EEEEEEEEeCCCh-------------HHHHhhHHHHhcCCCE-EEEEEECcCHHHHHHHHHHH
Confidence 001111211 1136899999994 3455677788999985 44555554321111112222
Q ss_pred ----HhhCCCCCcEEEeecccccCC
Q 005389 209 ----GIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 209 ----~~~dp~g~rti~VlTK~D~~~ 229 (699)
+...+...++++|.||.|+.+
T Consensus 96 ~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 96 EDALKENDPSSVLLFLVGTKKDLSS 120 (170)
T ss_pred HHHHHhcCCCCCeEEEEEEChhcCc
Confidence 233344456899999999864
No 112
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.99 E-value=5.5e-09 Score=99.60 Aligned_cols=115 Identities=16% Similarity=0.217 Sum_probs=67.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+|+|..++|||||+|+|++..+.+.... ++.......
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~---------------------------------------- 40 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHES-TTQASFFQK---------------------------------------- 40 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCC-ccceeEEEE----------------------------------------
Confidence 689999999999999999998876332211 111110000
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---H
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---L 205 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l 205 (699)
.+.+.+ ....+.++|+||- +....+...|+.+++++++++ +....-.-.+. +
T Consensus 41 ----------~~~~~~-~~~~~~~~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~~ 95 (162)
T cd04123 41 ----------TVNIGG-KRIDLAIWDTAGQ-------------ERYHALGPIYYRDADGAILVY-DITDADSFQKVKKWI 95 (162)
T ss_pred ----------EEEECC-EEEEEEEEECCch-------------HHHHHhhHHHhccCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 011111 0125899999993 234455666788888555554 44332221221 2
Q ss_pred HHHHhhCCCCCcEEEeecccccCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
..++...+.+.++++|+||+|+..
T Consensus 96 ~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 96 KELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred HHHHHhCCCCCeEEEEEECccccc
Confidence 223344444689999999999874
No 113
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.99 E-value=9.1e-09 Score=99.69 Aligned_cols=117 Identities=21% Similarity=0.343 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
+-+|+|+|..++|||||++++++..+.+......+ .. +.
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~-----~~---------~~--------------------------- 43 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG-----VE---------FL--------------------------- 43 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCcee-----eE---------EE---------------------------
Confidence 45799999999999999999998876332211100 00 00
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-ccch-HH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LANS-DA 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~~-~~ 204 (699)
...+.+.+ ....+.||||||- +..+.+...|++.++++|+++...+.+ +..- .+
T Consensus 44 ----------~~~~~~~~-~~~~l~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 99 (170)
T cd04116 44 ----------NKDLEVDG-HFVTLQIWDTAGQ-------------ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNW 99 (170)
T ss_pred ----------EEEEEECC-eEEEEEEEeCCCh-------------HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHH
Confidence 00111111 1136889999992 356677778999998666554322211 2111 11
Q ss_pred HH-HHHhhC---CCCCcEEEeecccccC
Q 005389 205 LQ-IAGIAD---PDGYRTIGIITKLDIM 228 (699)
Q Consensus 205 l~-l~~~~d---p~g~rti~VlTK~D~~ 228 (699)
.. +.+... +.+.++++|.||+|+.
T Consensus 100 ~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 100 KKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HHHHHHhcccccCCCCcEEEEEECcccc
Confidence 11 222221 3467999999999986
No 114
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.99 E-value=1.5e-08 Score=102.67 Aligned_cols=117 Identities=20% Similarity=0.235 Sum_probs=68.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+|+|+.++|||||++.|++..+-+... +++.. ++.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~-------------d~~---------------------------- 40 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PTVGV-------------DFF---------------------------- 40 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-ceece-------------EEE----------------------------
Confidence 479999999999999999999887632211 11000 000
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA--- 204 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~--- 204 (699)
...+.+.......+.|+||||. +....+...|+++++++|+++ +.+..-+-.++
T Consensus 41 ---------~~~i~~~~~~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~iilv~-D~~~~~Sf~~l~~~ 97 (211)
T cd04111 41 ---------SRLIEIEPGVRIKLQLWDTAGQ-------------ERFRSITRSYYRNSVGVLLVF-DITNRESFEHVHDW 97 (211)
T ss_pred ---------EEEEEECCCCEEEEEEEeCCcc-------------hhHHHHHHHHhcCCcEEEEEE-ECCCHHHHHHHHHH
Confidence 0011111111136899999993 245566778999998655554 44332111122
Q ss_pred HHHH-HhhCCCCCcEEEeecccccCC
Q 005389 205 LQIA-GIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 l~l~-~~~dp~g~rti~VlTK~D~~~ 229 (699)
+..+ +...+...+.++|.||.|+.+
T Consensus 98 ~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 98 LEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred HHHHHHhcCCCCCeEEEEEEcccccc
Confidence 2222 233344566788999999975
No 115
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.98 E-value=4.6e-09 Score=100.51 Aligned_cols=115 Identities=17% Similarity=0.267 Sum_probs=68.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+++|.+++|||||+++|++..+. .+..+++.... ..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~-------------~~---------------------------- 39 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSY-------------RK---------------------------- 39 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhE-------------EE----------------------------
Confidence 6999999999999999999988753 22222111100 00
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-cc-chHHH-
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LA-NSDAL- 205 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~-~~~~l- 205 (699)
.+.+. .....+.+|||||.. .+..+...+++..+++++++...+.. +. ....+
T Consensus 40 ----------~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 95 (164)
T cd04139 40 ----------KVVLD-GEDVQLNILDTAGQE-------------DYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFRE 95 (164)
T ss_pred ----------EEEEC-CEEEEEEEEECCChh-------------hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00000 011358899999943 33455667888888776665432211 10 11122
Q ss_pred HHHHhhCCCCCcEEEeecccccCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.+.+.......+.++|+||+|+..
T Consensus 96 ~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 96 QILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred HHHHhcCCCCCCEEEEEEcccccc
Confidence 233333345799999999999975
No 116
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.98 E-value=3.5e-09 Score=104.57 Aligned_cols=68 Identities=16% Similarity=0.279 Sum_probs=42.8
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH----HHHHhhCCCCCcEEEeec
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL----QIAGIADPDGYRTIGIIT 223 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l----~l~~~~dp~g~rti~VlT 223 (699)
..+.+|||||. +.++.+...|+++++.+| +|.++...-.-.++. .+.+.....+.++++|+|
T Consensus 52 ~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~ii-~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~N 117 (183)
T cd04152 52 ITFHFWDVGGQ-------------EKLRPLWKSYTRCTDGIV-FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLAN 117 (183)
T ss_pred eEEEEEECCCc-------------HhHHHHHHHHhccCCEEE-EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 36899999993 245567778899898554 455554321111111 122333335789999999
Q ss_pred ccccCC
Q 005389 224 KLDIMD 229 (699)
Q Consensus 224 K~D~~~ 229 (699)
|+|+..
T Consensus 118 K~D~~~ 123 (183)
T cd04152 118 KQDLPN 123 (183)
T ss_pred CcCccc
Confidence 999864
No 117
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.98 E-value=3.2e-09 Score=105.82 Aligned_cols=68 Identities=21% Similarity=0.227 Sum_probs=45.7
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
..+.||||||.. .+..++..|++.++++|+ |+++........ ..+.+.+...+.+.++|+||+|+
T Consensus 65 ~~~~l~DtpG~~-------------~~~~~~~~~~~~~d~~il-V~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~Dl 129 (194)
T cd01891 65 TKINIVDTPGHA-------------DFGGEVERVLSMVDGVLL-LVDASEGPMPQT-RFVLKKALELGLKPIVVINKIDR 129 (194)
T ss_pred EEEEEEECCCcH-------------HHHHHHHHHHHhcCEEEE-EEECCCCccHHH-HHHHHHHHHcCCCEEEEEECCCC
Confidence 468999999953 355677789999985555 455554332222 23344444457899999999999
Q ss_pred CCC
Q 005389 228 MDR 230 (699)
Q Consensus 228 ~~~ 230 (699)
.+.
T Consensus 130 ~~~ 132 (194)
T cd01891 130 PDA 132 (194)
T ss_pred CCC
Confidence 753
No 118
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.97 E-value=5.3e-09 Score=106.12 Aligned_cols=116 Identities=15% Similarity=0.150 Sum_probs=67.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+|||+.++|||||++.|++..| +....++.. +.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~~----~d---------------------------------------- 36 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTIG----LD---------------------------------------- 36 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCCCCcee----EE----------------------------------------
Confidence 689999999999999999998865 222111110 00
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---HHH
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DAL 205 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~l 205 (699)
.....+.+.+.....+.|+||||. +....+...|+++++++|+++ +.....+-. .++
T Consensus 37 ------~~~~~i~~~~~~~~~~~i~Dt~G~-------------~~~~~l~~~~~~~ad~iilV~-D~t~~~s~~~~~~w~ 96 (215)
T cd04109 37 ------FFSKRVTLPGNLNVTLQVWDIGGQ-------------SIGGKMLDKYIYGAHAVFLVY-DVTNSQSFENLEDWY 96 (215)
T ss_pred ------EEEEEEEeCCCCEEEEEEEECCCc-------------HHHHHHHHHHhhcCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 000011221111236899999993 245567778999999665554 444321111 122
Q ss_pred HHHHhhCC---CCCcEEEeecccccCC
Q 005389 206 QIAGIADP---DGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~~~dp---~g~rti~VlTK~D~~~ 229 (699)
..++.... ...++++|.||+|+.+
T Consensus 97 ~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 97 SMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred HHHHHhccccCCCceEEEEEECccccc
Confidence 33333322 2356899999999964
No 119
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.97 E-value=9.3e-09 Score=96.65 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
+|++||++++|||||+|+|+|..+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 699999999999999999998754
No 120
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.97 E-value=4.5e-09 Score=101.20 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=42.4
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---HH-HHHhhCCCCCcEEEeec
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQ-IAGIADPDGYRTIGIIT 223 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l~-l~~~~dp~g~rti~VlT 223 (699)
..+.|+||||.. ..+.+...|++..+++|+++.. ....+-.+. +. +.+.....+.++++|.|
T Consensus 49 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~d~-~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 114 (164)
T cd04175 49 CMLEILDTAGTE-------------QFTAMRDLYMKNGQGFVLVYSI-TAQSTFNDLQDLREQILRVKDTEDVPMILVGN 114 (164)
T ss_pred EEEEEEECCCcc-------------cchhHHHHHHhhCCEEEEEEEC-CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 357899999953 3445666789999977766543 222111111 22 22222345689999999
Q ss_pred ccccCC
Q 005389 224 KLDIMD 229 (699)
Q Consensus 224 K~D~~~ 229 (699)
|+|+..
T Consensus 115 K~Dl~~ 120 (164)
T cd04175 115 KCDLED 120 (164)
T ss_pred CCcchh
Confidence 999864
No 121
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.97 E-value=1.3e-08 Score=100.40 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
+|+|+|..++|||||+++|++..+
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~ 25 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF 25 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC
Confidence 699999999999999999998875
No 122
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.96 E-value=5.6e-09 Score=120.33 Aligned_cols=134 Identities=17% Similarity=0.213 Sum_probs=78.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
+..|.|+|+|..++|||||||+|+|..+.....|..|+..-...+. ... ..+
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~-~~~---------~~~------------------ 53 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIP-MDV---------IEG------------------ 53 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEee-ecc---------ccc------------------
Confidence 4579999999999999999999999977544444444321000000 000 000
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (699)
..+ ......++..+ .+.++||||||.. .+..+...+++.++ ++++|+++......+.
T Consensus 54 -~~~------~~~~~~~v~~~-~~~l~~iDTpG~e-------------~f~~l~~~~~~~aD-~~IlVvD~~~g~~~qt- 110 (590)
T TIGR00491 54 -ICG------DLLKKFKIRLK-IPGLLFIDTPGHE-------------AFTNLRKRGGALAD-LAILIVDINEGFKPQT- 110 (590)
T ss_pred -ccc------ccccccccccc-cCcEEEEECCCcH-------------hHHHHHHHHHhhCC-EEEEEEECCcCCCHhH-
Confidence 000 00000111111 1359999999942 44556667888888 5555566665443333
Q ss_pred HHHHHhhCCCCCcEEEeecccccCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
...+..+...+.+.++|+||+|+.+
T Consensus 111 ~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 111 QEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHHcCCCEEEEEECCCccc
Confidence 3444444445789999999999974
No 123
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.95 E-value=8.2e-09 Score=100.57 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=68.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||++++++..|-|....+++......
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~--------------------------------------- 44 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAV--------------------------------------- 44 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEE---------------------------------------
Confidence 35799999999999999999999876312221111100000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
-.+.+.+ ....+.++|++|-.. ...+...|+.+++.+ ++|.++.....-.....
T Consensus 45 -----------~~~~~~~-~~~~l~~~d~~g~~~-------------~~~~~~~~~~~~d~~-llv~d~~~~~s~~~~~~ 98 (169)
T cd01892 45 -----------NTVEVYG-QEKYLILREVGEDEV-------------AILLNDAELAACDVA-CLVYDSSDPKSFSYCAE 98 (169)
T ss_pred -----------EEEEECC-eEEEEEEEecCCccc-------------ccccchhhhhcCCEE-EEEEeCCCHHHHHHHHH
Confidence 0111111 113588999999432 233445678888844 45555543322122223
Q ss_pred HHHhhC-CCCCcEEEeecccccCC
Q 005389 207 IAGIAD-PDGYRTIGIITKLDIMD 229 (699)
Q Consensus 207 l~~~~d-p~g~rti~VlTK~D~~~ 229 (699)
+.+.+. ..+.++++|+||+|+.+
T Consensus 99 ~~~~~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 99 VYKKYFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred HHHHhccCCCCeEEEEEEcccccc
Confidence 444442 23689999999999864
No 124
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.95 E-value=2e-08 Score=98.14 Aligned_cols=115 Identities=16% Similarity=0.264 Sum_probs=69.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+|+|..++|||||++.+++..| |....+++.. .+.
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f-~~~~~~t~~~-------------~~~----------------------------- 40 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSF-PDYHDPTIED-------------AYK----------------------------- 40 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CCCcCCcccc-------------eEE-----------------------------
Confidence 699999999999999999998876 2211111100 000
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-ccc-hHHHH
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LAN-SDALQ 206 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~-~~~l~ 206 (699)
..+.+.+. ...+.|+||||.. .++.+...|+..++++|+++...+.. +.+ .+...
T Consensus 41 ---------~~~~~~~~-~~~l~i~Dt~G~~-------------~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~ 97 (172)
T cd04141 41 ---------QQARIDNE-PALLDILDTAGQA-------------EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKK 97 (172)
T ss_pred ---------EEEEECCE-EEEEEEEeCCCch-------------hhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHH
Confidence 01111111 1368999999942 45667778999998776665433221 111 11223
Q ss_pred HHHhh-CCCCCcEEEeecccccCC
Q 005389 207 IAGIA-DPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 207 l~~~~-dp~g~rti~VlTK~D~~~ 229 (699)
..... ...+.|+++|.||+|+.+
T Consensus 98 ~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 98 LITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred HHHHhcCCCCCCEEEEEEChhhhh
Confidence 34443 234689999999999864
No 125
>PTZ00369 Ras-like protein; Provisional
Probab=98.95 E-value=1.1e-08 Score=101.42 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
-.+|+|+|..++|||||++++++..|
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~ 30 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF 30 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999998765
No 126
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.95 E-value=8.8e-09 Score=105.30 Aligned_cols=70 Identities=20% Similarity=0.296 Sum_probs=48.1
Q ss_pred ccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHh-cCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccc
Q 005389 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYI-KQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 147 ~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi-~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~ 225 (699)
...++||||||.. ...+.++.... ..+| ++++|+++..+...++ ..++..+...+.+.++|+||+
T Consensus 83 ~~~i~liDtpG~~------------~~~~~~~~~~~~~~~D-~~llVvda~~g~~~~d-~~~l~~l~~~~ip~ivvvNK~ 148 (224)
T cd04165 83 SKLVTFIDLAGHE------------RYLKTTLFGLTGYAPD-YAMLVVAANAGIIGMT-KEHLGLALALNIPVFVVVTKI 148 (224)
T ss_pred CcEEEEEECCCcH------------HHHHHHHHhhcccCCC-EEEEEEECCCCCcHHH-HHHHHHHHHcCCCEEEEEECc
Confidence 3479999999953 23344433322 2466 6666777877766554 566777777789999999999
Q ss_pred ccCCC
Q 005389 226 DIMDR 230 (699)
Q Consensus 226 D~~~~ 230 (699)
|++++
T Consensus 149 D~~~~ 153 (224)
T cd04165 149 DLAPA 153 (224)
T ss_pred cccCH
Confidence 99754
No 127
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.94 E-value=1.1e-08 Score=107.21 Aligned_cols=136 Identities=18% Similarity=0.229 Sum_probs=76.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
..|+|+|..++|||||+|+|+...- ...+.. .+. . . . ..|....|+.....+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g------~i~~~g-~v~--~-~---~------~~~~t~~D~~~~e~~--------- 54 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGG------AIREAG-AVK--A-R---K------SRKHATSDWMEIEKQ--------- 54 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcC------CcccCc-eec--c-c---c------cCCCccCCCcHHHHh---------
Confidence 4699999999999999999986531 111111 000 0 0 0 001112233222111
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (699)
.+++-..-.+.+.+.+ ..+.||||||.. .+...+..+++..+++|+ |+++......+. ..+
T Consensus 55 ---rg~si~~~~~~~~~~~-~~i~liDTPG~~-------------df~~~~~~~l~~aD~~Il-Vvda~~g~~~~~-~~i 115 (267)
T cd04169 55 ---RGISVTSSVMQFEYRD-CVINLLDTPGHE-------------DFSEDTYRTLTAVDSAVM-VIDAAKGVEPQT-RKL 115 (267)
T ss_pred ---CCCCeEEEEEEEeeCC-EEEEEEECCCch-------------HHHHHHHHHHHHCCEEEE-EEECCCCccHHH-HHH
Confidence 2233222233333332 479999999954 223445667888885555 555655443322 344
Q ss_pred HHhhCCCCCcEEEeecccccCCC
Q 005389 208 AGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 208 ~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+.....+.++++|+||+|+...
T Consensus 116 ~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 116 FEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHhcCCCEEEEEECCccCCC
Confidence 55555567899999999998654
No 128
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.94 E-value=8.5e-09 Score=99.07 Aligned_cols=115 Identities=19% Similarity=0.235 Sum_probs=66.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+++|.+++|||||++.+++..+.+.-. +++... +
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~-~t~~~~-------------~------------------------------ 38 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYD-PTIEDF-------------Y------------------------------ 38 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCC-Cchhhe-------------E------------------------------
Confidence 69999999999999999999887632211 110000 0
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-ccc-hHHHH
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LAN-SDALQ 206 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~-~~~l~ 206 (699)
...+.+.+ ....+.|+||||.. .+..+...|+++++++|+++...+.. +.. ..++.
T Consensus 39 --------~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~ 96 (163)
T cd04176 39 --------RKEIEVDS-SPSVLEILDTAGTE-------------QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRD 96 (163)
T ss_pred --------EEEEEECC-EEEEEEEEECCCcc-------------cccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00111111 11258899999943 33455667889998766665433221 111 11122
Q ss_pred HHHh-hCCCCCcEEEeecccccCC
Q 005389 207 IAGI-ADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 207 l~~~-~dp~g~rti~VlTK~D~~~ 229 (699)
.+.. ....+.++++|.||+|+..
T Consensus 97 ~~~~~~~~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 97 QIVRVKGYEKVPIILVGNKVDLES 120 (163)
T ss_pred HHHHhcCCCCCCEEEEEECccchh
Confidence 2222 2335789999999999864
No 129
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.94 E-value=7.1e-09 Score=102.50 Aligned_cols=112 Identities=17% Similarity=0.199 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
-++|+++|.++||||||++.|+|..+.. ..+|..+....
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~---~~~t~~~~~~~-------------------------------------- 55 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ---HQPTQHPTSEE-------------------------------------- 55 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccccceEE--------------------------------------
Confidence 3789999999999999999999876421 11222221100
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH-
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL- 205 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l- 205 (699)
+.+. ...+.++||||.. ..+.+...|+.+++++|++| ++.....-..+.
T Consensus 56 -------------~~~~---~~~~~~~D~~G~~-------------~~~~~~~~~~~~ad~ii~vv-D~~~~~~~~~~~~ 105 (184)
T smart00178 56 -------------LAIG---NIKFTTFDLGGHQ-------------QARRLWKDYFPEVNGIVYLV-DAYDKERFAESKR 105 (184)
T ss_pred -------------EEEC---CEEEEEEECCCCH-------------HHHHHHHHHhCCCCEEEEEE-ECCcHHHHHHHHH
Confidence 1110 1358899999953 33456678999998666555 443321111111
Q ss_pred ---HHHHhhCCCCCcEEEeecccccCC
Q 005389 206 ---QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ---~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
++.+...-.+.++++|+||.|+..
T Consensus 106 ~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 106 ELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHcChhhcCCCEEEEEeCccccC
Confidence 122211224689999999999853
No 130
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.93 E-value=8.4e-09 Score=100.26 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=44.5
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhh----CCCCCcEEEeec
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA----DPDGYRTIGIIT 223 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----dp~g~rti~VlT 223 (699)
..+.++|+||- ..++.+...|+++++++|+++ ++.....-.++......+ ...+.++++|+|
T Consensus 43 ~~~~i~D~~G~-------------~~~~~~~~~~~~~a~~ii~V~-D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~N 108 (167)
T cd04161 43 YEVCIFDLGGG-------------ANFRGIWVNYYAEAHGLVFVV-DSSDDDRVQEVKEILRELLQHPRVSGKPILVLAN 108 (167)
T ss_pred EEEEEEECCCc-------------HHHHHHHHHHHcCCCEEEEEE-ECCchhHHHHHHHHHHHHHcCccccCCcEEEEEe
Confidence 36899999993 245677788999999666555 444322222222222222 224789999999
Q ss_pred ccccCCC
Q 005389 224 KLDIMDR 230 (699)
Q Consensus 224 K~D~~~~ 230 (699)
|.|+.+.
T Consensus 109 K~Dl~~~ 115 (167)
T cd04161 109 KQDKKNA 115 (167)
T ss_pred CCCCcCC
Confidence 9999754
No 131
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.93 E-value=1e-08 Score=97.59 Aligned_cols=114 Identities=17% Similarity=0.191 Sum_probs=67.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+|+|..+||||||+++|++..+ +....+++......
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~~~----------------------------------------- 38 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSYRK----------------------------------------- 38 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHeEEE-----------------------------------------
Confidence 489999999999999999998863 33332222211000
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---H
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---L 205 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l 205 (699)
...+. .....+.++|+||.. ....+...++...+.+|+++. ......-.+. +
T Consensus 39 ----------~~~~~-~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d-~~~~~s~~~~~~~~ 93 (160)
T cd00876 39 ----------TIVVD-GETYTLDILDTAGQE-------------EFSAMRDLYIRQGDGFILVYS-ITDRESFEEIKGYR 93 (160)
T ss_pred ----------EEEEC-CEEEEEEEEECCChH-------------HHHHHHHHHHhcCCEEEEEEE-CCCHHHHHHHHHHH
Confidence 01110 011358899999943 344556678888885655554 3322211121 2
Q ss_pred HHHHhhCC-CCCcEEEeecccccCC
Q 005389 206 QIAGIADP-DGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~~~dp-~g~rti~VlTK~D~~~ 229 (699)
.......+ .+.++++|+||+|+..
T Consensus 94 ~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 94 EQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHHHhcCCCCCcEEEEEECCcccc
Confidence 22233323 4799999999999976
No 132
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.93 E-value=7.7e-09 Score=99.96 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
.+|++||.+++|||||++++++..|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f 26 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 3699999999999999999998876
No 133
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.93 E-value=6.7e-09 Score=101.26 Aligned_cols=114 Identities=18% Similarity=0.262 Sum_probs=68.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
.-++|+++|..++|||||+++|++..+ +. .. +|..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~-~~-~t~g------------------------------------------ 47 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DT-IS-PTLG------------------------------------------ 47 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CC-cC-Cccc------------------------------------------
Confidence 457899999999999999999998743 11 00 0100
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
+... .+.+. ...+.|+||||.. .++.+...|++.++++|++ .++.....-.+..
T Consensus 48 -------~~~~--~~~~~---~~~l~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~ 101 (173)
T cd04154 48 -------FQIK--TLEYE---GYKLNIWDVGGQK-------------TLRPYWRNYFESTDALIWV-VDSSDRLRLDDCK 101 (173)
T ss_pred -------cceE--EEEEC---CEEEEEEECCCCH-------------HHHHHHHHHhCCCCEEEEE-EECCCHHHHHHHH
Confidence 0000 11111 1368999999942 3456677889999855555 4444331111211
Q ss_pred ----HHHHhhCCCCCcEEEeecccccCCC
Q 005389 206 ----QIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 206 ----~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+.+.....+.++++|+||+|+...
T Consensus 102 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 102 RELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 1222222246899999999999753
No 134
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.93 E-value=7e-09 Score=99.28 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=41.6
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHh----hCCCCCcEEEeec
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGI----ADPDGYRTIGIIT 223 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~----~dp~g~rti~VlT 223 (699)
..+.++||||.. .+..+...|+..++.+| +|.++.....-..+.....+ ....+.++++|+|
T Consensus 44 ~~l~i~D~~G~~-------------~~~~~~~~~~~~~~~iv-~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 109 (160)
T cd04156 44 LSLTVWDVGGQE-------------KMRTVWKCYLENTDGLV-YVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLAN 109 (160)
T ss_pred eEEEEEECCCCH-------------hHHHHHHHHhccCCEEE-EEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEE
Confidence 368999999943 34455667888888554 55555443221222221221 1124689999999
Q ss_pred ccccCC
Q 005389 224 KLDIMD 229 (699)
Q Consensus 224 K~D~~~ 229 (699)
|+|+.+
T Consensus 110 K~Dl~~ 115 (160)
T cd04156 110 KQDLPG 115 (160)
T ss_pred Cccccc
Confidence 999864
No 135
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.93 E-value=1.2e-08 Score=98.37 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=42.5
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHH----HHhhCCCCCcEEEeec
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI----AGIADPDGYRTIGIIT 223 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l----~~~~dp~g~rti~VlT 223 (699)
..+.++||||.. .+..+...++..++.+|+ |+++.....-...... .+.....+.++++|+|
T Consensus 50 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~~~~v~-vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~N 115 (167)
T cd04160 50 ARLKFWDLGGQE-------------SLRSLWDKYYAECHAIIY-VIDSTDRERFEESKSALEKVLRNEALEGVPLLILAN 115 (167)
T ss_pred EEEEEEECCCCh-------------hhHHHHHHHhCCCCEEEE-EEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 468999999953 344566778899985555 4554432111122222 2222234689999999
Q ss_pred ccccCCC
Q 005389 224 KLDIMDR 230 (699)
Q Consensus 224 K~D~~~~ 230 (699)
|+|+...
T Consensus 116 K~D~~~~ 122 (167)
T cd04160 116 KQDLPDA 122 (167)
T ss_pred ccccccC
Confidence 9998653
No 136
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.92 E-value=1.1e-08 Score=105.47 Aligned_cols=130 Identities=16% Similarity=0.159 Sum_probs=74.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcCC
Q 005389 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGG 129 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~~ 129 (699)
|+++|..++|||||+|+|+...-.....|. + ..|....|+.....
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g~i~~~g~-------v----------------~~~~~~~D~~~~e~------------ 46 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAIRKLGS-------V----------------DKGTTRTDTMELER------------ 46 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCcccccc-------c----------------cCCcccCCCchhHh------------
Confidence 899999999999999999875311000000 0 00111222221111
Q ss_pred CCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHH
Q 005389 130 NKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAG 209 (699)
Q Consensus 130 ~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~ 209 (699)
..+++-......+.+.+ ..+.||||||..+ +...+..+++..+++|++ +++...... ....+.+
T Consensus 47 ~rg~ti~~~~~~~~~~~-~~i~liDTPG~~~-------------f~~~~~~~l~~aD~~IlV-vd~~~g~~~-~~~~~~~ 110 (237)
T cd04168 47 QRGITIFSAVASFQWED-TKVNLIDTPGHMD-------------FIAEVERSLSVLDGAILV-ISAVEGVQA-QTRILWR 110 (237)
T ss_pred hCCCceeeeeEEEEECC-EEEEEEeCCCccc-------------hHHHHHHHHHHhCeEEEE-EeCCCCCCH-HHHHHHH
Confidence 12233222233333332 4799999999752 233456788888855555 455554433 2234445
Q ss_pred hhCCCCCcEEEeecccccCCC
Q 005389 210 IADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 210 ~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+...+.+.++|+||+|+...
T Consensus 111 ~~~~~~~P~iivvNK~D~~~a 131 (237)
T cd04168 111 LLRKLNIPTIIFVNKIDRAGA 131 (237)
T ss_pred HHHHcCCCEEEEEECccccCC
Confidence 555567899999999999753
No 137
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.92 E-value=1.6e-08 Score=100.01 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=72.3
Q ss_pred HHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHH
Q 005389 36 FAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEI 115 (699)
Q Consensus 36 ~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i 115 (699)
++.+|. ...-.+|+++|..+||||||+++|++..+.+ ..+|..+...
T Consensus 10 ~~~~~~--~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~---~~~T~~~~~~---------------------------- 56 (190)
T cd00879 10 LSSLGL--YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQ---HVPTLHPTSE---------------------------- 56 (190)
T ss_pred HHHhhc--ccCCCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccCcceE----------------------------
Confidence 444554 3557899999999999999999999876421 1122222100
Q ss_pred HHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecC
Q 005389 116 RREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPA 195 (699)
Q Consensus 116 ~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a 195 (699)
.+.+. ...+.++|+||.. ..+.+...|++.++.+|+++ ++
T Consensus 57 -----------------------~i~~~---~~~~~l~D~~G~~-------------~~~~~~~~~~~~ad~iilV~-D~ 96 (190)
T cd00879 57 -----------------------ELTIG---NIKFKTFDLGGHE-------------QARRLWKDYFPEVDGIVFLV-DA 96 (190)
T ss_pred -----------------------EEEEC---CEEEEEEECCCCH-------------HHHHHHHHHhccCCEEEEEE-EC
Confidence 11111 1258899999932 34456678899998665554 44
Q ss_pred CCcccchHH----HHHHHhhCCCCCcEEEeecccccCC
Q 005389 196 NSDLANSDA----LQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 196 ~~d~~~~~~----l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.....-..+ ..+.+.....+.++++|+||+|+.+
T Consensus 97 ~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 97 ADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred CcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 322111111 1222222234689999999999864
No 138
>PLN03110 Rab GTPase; Provisional
Probab=98.92 E-value=3.1e-08 Score=100.66 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=71.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
.-.|+|||++++|||||++.|++..+.. ...+ |- .+.+
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~-t~---g~~~------------------------------------- 49 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKS-TI---GVEF------------------------------------- 49 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCC-ce---eEEE-------------------------------------
Confidence 4589999999999999999999987521 1111 10 0000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc---hH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SD 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~ 203 (699)
....+.+.+ ....+.||||||- +.+..+...|++.++++|++ .+.+....- ..
T Consensus 50 ---------~~~~v~~~~-~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~~~~ilv-~d~~~~~s~~~~~~ 105 (216)
T PLN03110 50 ---------ATRTLQVEG-KTVKAQIWDTAGQ-------------ERYRAITSAYYRGAVGALLV-YDITKRQTFDNVQR 105 (216)
T ss_pred ---------EEEEEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhCCCCEEEEE-EECCChHHHHHHHH
Confidence 000111111 1236889999992 35567778899998855554 444322111 12
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
++..++...+.+.++++|.||+|+..
T Consensus 106 ~~~~~~~~~~~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 106 WLRELRDHADSNIVIMMAGNKSDLNH 131 (216)
T ss_pred HHHHHHHhCCCCCeEEEEEEChhccc
Confidence 34445555556789999999999853
No 139
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.92 E-value=3.5e-08 Score=97.59 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=42.6
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---HHHHHHhhCCCCCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~dp~g~rti~VlTK~ 225 (699)
.+.++||||.. ....+...++++++++|+++. .+...+-.. ++...+...+...+.++|.||.
T Consensus 50 ~~~i~Dt~g~~-------------~~~~~~~~~~~~~d~iilv~d-~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~ 115 (188)
T cd04125 50 KLQIWDTNGQE-------------RFRSLNNSYYRGAHGYLLVYD-VTDQESFENLKFWINEINRYARENVIKVIVANKS 115 (188)
T ss_pred EEEEEECCCcH-------------HHHhhHHHHccCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 58899999932 445566788999986666654 332222111 1223334444457899999999
Q ss_pred ccCC
Q 005389 226 DIMD 229 (699)
Q Consensus 226 D~~~ 229 (699)
|+.+
T Consensus 116 Dl~~ 119 (188)
T cd04125 116 DLVN 119 (188)
T ss_pred CCcc
Confidence 9874
No 140
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.92 E-value=2.6e-08 Score=99.12 Aligned_cols=66 Identities=32% Similarity=0.445 Sum_probs=39.6
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH--HHHHHHhhCCCCCcEEEeeccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--ALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--~l~l~~~~dp~g~rti~VlTK~ 225 (699)
..++||||||.. ..++.. ...+..++ .+++|+++......++ .+.++.. .+.+.++|+||+
T Consensus 68 ~~~~i~DtpG~~------------~~~~~~-~~~~~~~d-~vi~VvD~~~~~~~~~~~~~~~~~~---~~~~~iiv~NK~ 130 (192)
T cd01889 68 LQITLVDCPGHA------------SLIRTI-IGGAQIID-LMLLVVDATKGIQTQTAECLVIGEI---LCKKLIVVLNKI 130 (192)
T ss_pred ceEEEEECCCcH------------HHHHHH-HHHHhhCC-EEEEEEECCCCccHHHHHHHHHHHH---cCCCEEEEEECc
Confidence 468999999952 122222 24445566 5555666665443332 2233322 367999999999
Q ss_pred ccCCC
Q 005389 226 DIMDR 230 (699)
Q Consensus 226 D~~~~ 230 (699)
|+...
T Consensus 131 Dl~~~ 135 (192)
T cd01889 131 DLIPE 135 (192)
T ss_pred ccCCH
Confidence 99853
No 141
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.92 E-value=7e-09 Score=100.82 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCC
Q 005389 50 VAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
|+|+|+.++|||||++.+++..|
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~ 23 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF 23 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC
Confidence 68999999999999999999876
No 142
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.92 E-value=7.2e-09 Score=100.48 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=42.9
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhC--CCCCcEEEeeccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIAD--PDGYRTIGIITKL 225 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d--p~g~rti~VlTK~ 225 (699)
..+.+|||||-. ..+.+...|+++++++|+++ ++.....-..+......+. ..+.++++|.||.
T Consensus 44 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~ii~V~-D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~ 109 (164)
T cd04162 44 AIMELLEIGGSQ-------------NLRKYWKRYLSGSQGLIFVV-DSADSERLPLARQELHQLLQHPPDLPLVVLANKQ 109 (164)
T ss_pred eEEEEEECCCCc-------------chhHHHHHHHhhCCEEEEEE-ECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCc
Confidence 368999999943 34456668999999666555 4443221112222222221 2478999999999
Q ss_pred ccCCC
Q 005389 226 DIMDR 230 (699)
Q Consensus 226 D~~~~ 230 (699)
|+...
T Consensus 110 Dl~~~ 114 (164)
T cd04162 110 DLPAA 114 (164)
T ss_pred CCcCC
Confidence 98653
No 143
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.92 E-value=1.2e-08 Score=99.28 Aligned_cols=116 Identities=16% Similarity=0.263 Sum_probs=67.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+|||+.++|||||++++++..+ +....+ |- ....
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~-t~---~~~~-------------------------------------- 39 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PERTEA-TI---GVDF-------------------------------------- 39 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCcccc-ce---eEEE--------------------------------------
Confidence 5799999999999999999998765 222111 10 0000
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHH-HHHHHHhcCCCeeEEEEecCCCcccchHHHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIR-TMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~-~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
....+.+.+. ...+.||||||.. .++ .+...|+++++++|+++. ......-.....
T Consensus 40 --------~~~~~~~~~~-~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~ 96 (170)
T cd04115 40 --------RERTVEIDGE-RIKVQLWDTAGQE-------------RFRKSMVQHYYRNVHAVVFVYD-VTNMASFHSLPS 96 (170)
T ss_pred --------EEEEEEECCe-EEEEEEEeCCChH-------------HHHHhhHHHhhcCCCEEEEEEE-CCCHHHHHhHHH
Confidence 0001111111 1368999999932 222 466788899997666554 433222222222
Q ss_pred ---HHHhh-CCCCCcEEEeecccccCC
Q 005389 207 ---IAGIA-DPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 207 ---l~~~~-dp~g~rti~VlTK~D~~~ 229 (699)
.+... .....++++|.||+|+..
T Consensus 97 ~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 97 WIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred HHHHHHHhcCCCCCCEEEEEECccchh
Confidence 22222 234689999999999864
No 144
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.92 E-value=6.3e-09 Score=109.31 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=54.0
Q ss_pred CccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhh
Q 005389 132 GVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA 211 (699)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~ 211 (699)
++|-+.....+.+.+ ..+.||||||..+ +...+..+++..+++| +|+++......++ ..+++.+
T Consensus 49 giti~~~~~~~~~~~-~~i~liDTPG~~d-------------f~~~~~~~l~~aD~ai-lVVDa~~g~~~~t-~~~~~~~ 112 (270)
T cd01886 49 GITIQSAATTCFWKD-HRINIIDTPGHVD-------------FTIEVERSLRVLDGAV-AVFDAVAGVEPQT-ETVWRQA 112 (270)
T ss_pred CcCeeccEEEEEECC-EEEEEEECCCcHH-------------HHHHHHHHHHHcCEEE-EEEECCCCCCHHH-HHHHHHH
Confidence 444444444444443 4789999999642 2233567888888444 5566766554433 4556666
Q ss_pred CCCCCcEEEeecccccCCC
Q 005389 212 DPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 212 dp~g~rti~VlTK~D~~~~ 230 (699)
...+.+.++|+||+|+...
T Consensus 113 ~~~~~p~ivviNK~D~~~a 131 (270)
T cd01886 113 DRYNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHcCCCEEEEEECCCCCCC
Confidence 6667899999999999753
No 145
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.91 E-value=2.3e-08 Score=102.93 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
+|+++|.+|+|||||+|+|+|..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~ 24 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK 24 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999985
No 146
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.91 E-value=9e-09 Score=98.38 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=43.1
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH----HHHHHhhCCCCCcEEEeec
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA----LQIAGIADPDGYRTIGIIT 223 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~----l~l~~~~dp~g~rti~VlT 223 (699)
..+.+|||||.. ....+...++...+++++ |.++...-.-..+ ..+.+.....+.++++|+|
T Consensus 43 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~~i~-v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd00878 43 VSFTVWDVGGQD-------------KIRPLWKHYYENTNGIIF-VVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFAN 108 (158)
T ss_pred EEEEEEECCCCh-------------hhHHHHHHHhccCCEEEE-EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEee
Confidence 369999999943 334556678888885555 4555433111111 1222333345789999999
Q ss_pred ccccCCC
Q 005389 224 KLDIMDR 230 (699)
Q Consensus 224 K~D~~~~ 230 (699)
|+|+...
T Consensus 109 K~D~~~~ 115 (158)
T cd00878 109 KQDLPGA 115 (158)
T ss_pred ccCCccc
Confidence 9999753
No 147
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.90 E-value=2.2e-08 Score=98.96 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=41.7
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhh-CC---CCCcEEEeecc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA-DP---DGYRTIGIITK 224 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~-dp---~g~rti~VlTK 224 (699)
.+.|+||||.. ..+.+...|++.++++|+++. +.....-.++......+ .. ...++++|+||
T Consensus 62 ~~~l~D~~G~~-------------~~~~~~~~~~~~ad~iI~v~D-~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK 127 (182)
T PTZ00133 62 KFTMWDVGGQD-------------KLRPLWRHYYQNTNGLIFVVD-SNDRERIGDAREELERMLSEDELRDAVLLVFANK 127 (182)
T ss_pred EEEEEECCCCH-------------hHHHHHHHHhcCCCEEEEEEe-CCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeC
Confidence 68999999942 456677889999996655554 43221111222222222 21 24789999999
Q ss_pred cccCC
Q 005389 225 LDIMD 229 (699)
Q Consensus 225 ~D~~~ 229 (699)
.|+.+
T Consensus 128 ~Dl~~ 132 (182)
T PTZ00133 128 QDLPN 132 (182)
T ss_pred CCCCC
Confidence 99864
No 148
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.90 E-value=6.4e-09 Score=105.08 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=47.6
Q ss_pred CCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHh
Q 005389 131 KGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGI 210 (699)
Q Consensus 131 ~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~ 210 (699)
.+++.+.....+... ...+.||||||.. ..... +..++..++ ++++|+++......++ ......
T Consensus 61 rg~T~~~~~~~~~~~-~~~~~liDTpG~~------------~~~~~-~~~~~~~ad-~~llVvD~~~~~~~~~-~~~~~~ 124 (208)
T cd04166 61 QGITIDVAYRYFSTP-KRKFIIADTPGHE------------QYTRN-MVTGASTAD-LAILLVDARKGVLEQT-RRHSYI 124 (208)
T ss_pred CCcCeecceeEEecC-CceEEEEECCcHH------------HHHHH-HHHhhhhCC-EEEEEEECCCCccHhH-HHHHHH
Confidence 345555444444433 3478999999952 12222 345678888 5556666665543332 222222
Q ss_pred hCCCC-CcEEEeecccccCCC
Q 005389 211 ADPDG-YRTIGIITKLDIMDR 230 (699)
Q Consensus 211 ~dp~g-~rti~VlTK~D~~~~ 230 (699)
+...+ .++|+|+||+|+...
T Consensus 125 ~~~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 125 LSLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred HHHcCCCcEEEEEEchhcccC
Confidence 22223 457889999999753
No 149
>PLN03108 Rab family protein; Provisional
Probab=98.89 E-value=5e-08 Score=98.69 Aligned_cols=117 Identities=19% Similarity=0.226 Sum_probs=69.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|+.++|||||++.|++..|.+.... |-. . .+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~--ti~---~---------~~---------------------------- 43 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIG---V---------EF---------------------------- 43 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--Ccc---c---------eE----------------------------
Confidence 35799999999999999999998876433211 000 0 00
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---H
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (699)
....+.+.+.. ..+.||||||.. .+..+...|++.++++|+++ +......-. .
T Consensus 44 ---------~~~~i~~~~~~-i~l~l~Dt~G~~-------------~~~~~~~~~~~~ad~~vlv~-D~~~~~s~~~l~~ 99 (210)
T PLN03108 44 ---------GARMITIDNKP-IKLQIWDTAGQE-------------SFRSITRSYYRGAAGALLVY-DITRRETFNHLAS 99 (210)
T ss_pred ---------EEEEEEECCEE-EEEEEEeCCCcH-------------HHHHHHHHHhccCCEEEEEE-ECCcHHHHHHHHH
Confidence 00011111111 258899999932 44556678888888666555 433221111 1
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
++..+........++++|.||+|+..
T Consensus 100 ~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 100 WLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHHHHHHhcCCCCcEEEEEECccCcc
Confidence 12223333344688999999999864
No 150
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.89 E-value=1e-08 Score=98.21 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=42.5
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc----hHHHHHHHhhCCCCCcEEEeecc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN----SDALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~----~~~l~l~~~~dp~g~rti~VlTK 224 (699)
.+.+|||||.. .++.+...|+..++.+|++ +++.....- .....+.+.....+.++++|+||
T Consensus 44 ~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~ii~v-~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 109 (158)
T cd04151 44 KFQVWDLGGQT-------------SIRPYWRCYYSNTDAIIYV-VDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANK 109 (158)
T ss_pred EEEEEECCCCH-------------HHHHHHHHHhcCCCEEEEE-EECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeC
Confidence 68999999953 3456677889999855554 455432111 11112223222246899999999
Q ss_pred cccCCC
Q 005389 225 LDIMDR 230 (699)
Q Consensus 225 ~D~~~~ 230 (699)
+|+.+.
T Consensus 110 ~Dl~~~ 115 (158)
T cd04151 110 QDMPGA 115 (158)
T ss_pred CCCCCC
Confidence 999743
No 151
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.89 E-value=2.9e-08 Score=104.27 Aligned_cols=68 Identities=24% Similarity=0.292 Sum_probs=45.7
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
..++||||||.. .+...+..++..++. +++|+++......+ ...+.+.+...+.+.++|+||+|+
T Consensus 64 ~~i~liDtPG~~-------------~f~~~~~~~l~~aD~-~i~Vvd~~~g~~~~-~~~~~~~~~~~~~p~iivvNK~D~ 128 (268)
T cd04170 64 HKINLIDTPGYA-------------DFVGETRAALRAADA-ALVVVSAQSGVEVG-TEKLWEFADEAGIPRIIFINKMDR 128 (268)
T ss_pred EEEEEEECcCHH-------------HHHHHHHHHHHHCCE-EEEEEeCCCCCCHH-HHHHHHHHHHcCCCEEEEEECCcc
Confidence 478999999953 223445667888884 45555665543332 234455555667899999999999
Q ss_pred CCC
Q 005389 228 MDR 230 (699)
Q Consensus 228 ~~~ 230 (699)
...
T Consensus 129 ~~~ 131 (268)
T cd04170 129 ERA 131 (268)
T ss_pred CCC
Confidence 754
No 152
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.89 E-value=3.6e-08 Score=97.37 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=43.6
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhh-C---CCCCcEEEeecc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA-D---PDGYRTIGIITK 224 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~-d---p~g~rti~VlTK 224 (699)
.+.|+|+||- +.++.+...|+++++++|++ .|++....-.++......+ . ....++++|.||
T Consensus 62 ~~~i~D~~Gq-------------~~~~~~~~~~~~~a~~iI~V-~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK 127 (181)
T PLN00223 62 SFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFV-VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (181)
T ss_pred EEEEEECCCC-------------HHHHHHHHHHhccCCEEEEE-EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEEC
Confidence 5899999992 35677888899999965555 4444322222222222222 2 135789999999
Q ss_pred cccCCC
Q 005389 225 LDIMDR 230 (699)
Q Consensus 225 ~D~~~~ 230 (699)
.|+.+.
T Consensus 128 ~Dl~~~ 133 (181)
T PLN00223 128 QDLPNA 133 (181)
T ss_pred CCCCCC
Confidence 998643
No 153
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.89 E-value=2.6e-08 Score=96.56 Aligned_cols=115 Identities=21% Similarity=0.302 Sum_probs=67.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+++|.+||||||+++++++..+.+.- .+++... +..
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~~-~~t~~~~-------------~~~---------------------------- 40 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIESY-DPTIEDS-------------YRK---------------------------- 40 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCccc-CCcchhe-------------EEE----------------------------
Confidence 6999999999999999999988763221 1111100 000
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-ccc-hHHHH
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LAN-SDALQ 206 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~-~~~l~ 206 (699)
.+.+.+ ....+.+|||||.. .++.+...|+...+.+|+++...+.. +.. .....
T Consensus 41 ----------~~~~~~-~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~ 96 (168)
T cd04177 41 ----------QVEIDG-RQCDLEILDTAGTE-------------QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELRE 96 (168)
T ss_pred ----------EEEECC-EEEEEEEEeCCCcc-------------cchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHH
Confidence 111111 11368899999953 34456667888888666654433211 111 11122
Q ss_pred HHHh-hCCCCCcEEEeecccccCC
Q 005389 207 IAGI-ADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 207 l~~~-~dp~g~rti~VlTK~D~~~ 229 (699)
.... ....+.++++|.||.|+..
T Consensus 97 ~i~~~~~~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 97 QVLRIKDSDNVPMVLVGNKADLED 120 (168)
T ss_pred HHHHhhCCCCCCEEEEEEChhccc
Confidence 2222 3345789999999999864
No 154
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.88 E-value=2.5e-08 Score=96.98 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=23.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
.+|+|+|+.++|||||++.+++..+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~ 26 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF 26 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999998765
No 155
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.88 E-value=2.2e-08 Score=97.41 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=40.4
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhh----CCCCCcEEEeecc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA----DPDGYRTIGIITK 224 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----dp~g~rti~VlTK 224 (699)
.+.++||||.. ..+.+...|++.++++|+++. ......-.++......+ ...+.++++|.||
T Consensus 44 ~i~l~Dt~G~~-------------~~~~~~~~~~~~ad~ii~V~D-~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 109 (169)
T cd04158 44 KFTIWDVGGKH-------------KLRPLWKHYYLNTQAVVFVVD-SSHRDRVSEAHSELAKLLTEKELRDALLLIFANK 109 (169)
T ss_pred EEEEEECCCCh-------------hcchHHHHHhccCCEEEEEEe-CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeC
Confidence 68999999953 234556678899986665554 43321111222222222 1224789999999
Q ss_pred cccCC
Q 005389 225 LDIMD 229 (699)
Q Consensus 225 ~D~~~ 229 (699)
.|+.+
T Consensus 110 ~Dl~~ 114 (169)
T cd04158 110 QDVAG 114 (169)
T ss_pred cCccc
Confidence 99964
No 156
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.88 E-value=1e-08 Score=100.45 Aligned_cols=68 Identities=21% Similarity=0.230 Sum_probs=42.6
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhh----CCCCCcEEEeec
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA----DPDGYRTIGIIT 223 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----dp~g~rti~VlT 223 (699)
..+.|+||||.. ..+.+...|+++++++|+++ +......-.++.+....+ ...+.++++|+|
T Consensus 57 ~~l~l~D~~G~~-------------~~~~~~~~~~~~ad~ii~v~-D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~N 122 (175)
T smart00177 57 ISFTVWDVGGQD-------------KIRPLWRHYYTNTQGLIFVV-DSNDRDRIDEAREELHRMLNEDELRDAVILVFAN 122 (175)
T ss_pred EEEEEEECCCCh-------------hhHHHHHHHhCCCCEEEEEE-ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEe
Confidence 368999999943 45567788999999655554 444322122222222222 113578999999
Q ss_pred ccccCC
Q 005389 224 KLDIMD 229 (699)
Q Consensus 224 K~D~~~ 229 (699)
|.|+.+
T Consensus 123 K~Dl~~ 128 (175)
T smart00177 123 KQDLPD 128 (175)
T ss_pred CcCccc
Confidence 999864
No 157
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.86 E-value=2.1e-08 Score=97.63 Aligned_cols=67 Identities=19% Similarity=0.148 Sum_probs=42.2
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhC----CCCCcEEEeecc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIAD----PDGYRTIGIITK 224 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d----p~g~rti~VlTK 224 (699)
.+.|+||||.. ..+.+...|+++++++|+++ ++.....-.++.+...++. ..+.++++|.||
T Consensus 54 ~~~l~Dt~G~~-------------~~~~~~~~~~~~a~~ii~v~-D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 119 (168)
T cd04149 54 KFNVWDVGGQD-------------KIRPLWRHYYTGTQGLIFVV-DSADRDRIDEARQELHRIINDREMRDALLLVFANK 119 (168)
T ss_pred EEEEEECCCCH-------------HHHHHHHHHhccCCEEEEEE-eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEEC
Confidence 58999999943 34556677899998555554 4443222222223222221 135799999999
Q ss_pred cccCC
Q 005389 225 LDIMD 229 (699)
Q Consensus 225 ~D~~~ 229 (699)
+|+.+
T Consensus 120 ~Dl~~ 124 (168)
T cd04149 120 QDLPD 124 (168)
T ss_pred cCCcc
Confidence 99864
No 158
>PLN03118 Rab family protein; Provisional
Probab=98.86 E-value=1.7e-08 Score=101.96 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=23.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
.+|+|||..++|||||+++|++..+
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~ 39 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSV 39 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC
Confidence 4899999999999999999998765
No 159
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.86 E-value=1.4e-08 Score=98.57 Aligned_cols=66 Identities=15% Similarity=0.105 Sum_probs=40.0
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---HHHHHHhhCCCCCcEEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~dp~g~rti~VlTK 224 (699)
..+.++||||... ...+...|+..++++|+++ +.+...+-.. ++..++...+ ..++++|.||
T Consensus 49 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK 113 (166)
T cd00877 49 IRFNVWDTAGQEK-------------FGGLRDGYYIGGQCAIIMF-DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNK 113 (166)
T ss_pred EEEEEEECCCChh-------------hccccHHHhcCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEc
Confidence 3689999999532 2233445778888555554 4443222222 2233333333 6899999999
Q ss_pred cccC
Q 005389 225 LDIM 228 (699)
Q Consensus 225 ~D~~ 228 (699)
+|+.
T Consensus 114 ~Dl~ 117 (166)
T cd00877 114 VDIK 117 (166)
T ss_pred hhcc
Confidence 9996
No 160
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.85 E-value=1.9e-08 Score=100.58 Aligned_cols=128 Identities=17% Similarity=0.203 Sum_probs=72.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
.|+++|..++|||||+++|++..- ..+.. +...+ ...|.....
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~-~~g~~---------------~~~~~---------~~~d~~~~E------------ 46 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLA-KKGGA---------------KFKKY---------DEIDKAPEE------------ 46 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-hcccc---------------ccccc---------ccccCChhh------------
Confidence 589999999999999999987520 00000 00000 001111100
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHH
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIA 208 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~ 208 (699)
...+++-+...+.... ....++||||||.. ..+.. +...+..+| ++++|+++......++ ..++
T Consensus 47 ~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~------------~~~~~-~~~~~~~~D-~~ilVvda~~g~~~~~-~~~~ 110 (195)
T cd01884 47 KARGITINTAHVEYET-ANRHYAHVDCPGHA------------DYIKN-MITGAAQMD-GAILVVSATDGPMPQT-REHL 110 (195)
T ss_pred hhcCccEEeeeeEecC-CCeEEEEEECcCHH------------HHHHH-HHHHhhhCC-EEEEEEECCCCCcHHH-HHHH
Confidence 0123333333333332 23478999999963 12333 345566787 5555666766654443 4455
Q ss_pred HhhCCCCCc-EEEeecccccCC
Q 005389 209 GIADPDGYR-TIGIITKLDIMD 229 (699)
Q Consensus 209 ~~~dp~g~r-ti~VlTK~D~~~ 229 (699)
+.+...+.+ .|+|+||+|++.
T Consensus 111 ~~~~~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 111 LLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred HHHHHcCCCcEEEEEeCCCCCC
Confidence 555556665 789999999985
No 161
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.85 E-value=1.5e-08 Score=97.95 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
+|+|+|..++|||||+++|++..+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~ 25 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999999876
No 162
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.85 E-value=4.7e-08 Score=98.35 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.|+++|..++|||||+++|+|..
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~ 24 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVW 24 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998873
No 163
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.83 E-value=3.2e-08 Score=96.14 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
+|+|+|..++|||||++++++..|
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~ 25 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999998876
No 164
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.83 E-value=3.2e-08 Score=96.85 Aligned_cols=24 Identities=46% Similarity=0.657 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
+|+++|..|+|||||++++++..+
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~ 26 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999998865
No 165
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.83 E-value=4e-08 Score=113.78 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=42.9
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCc-EEEeecccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKLD 226 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~r-ti~VlTK~D 226 (699)
..++|||+||. +.+......++.+.+ ++++|++++.+...+. .+.+..+...+.+ .|+|+||+|
T Consensus 50 ~~v~~iDtPGh-------------e~f~~~~~~g~~~aD-~aILVVDa~~G~~~qT-~ehl~il~~lgi~~iIVVlNK~D 114 (581)
T TIGR00475 50 YRLGFIDVPGH-------------EKFISNAIAGGGGID-AALLVVDADEGVMTQT-GEHLAVLDLLGIPHTIVVITKAD 114 (581)
T ss_pred EEEEEEECCCH-------------HHHHHHHHhhhccCC-EEEEEEECCCCCcHHH-HHHHHHHHHcCCCeEEEEEECCC
Confidence 46899999993 233344456778888 5555666665443322 2222233334566 999999999
Q ss_pred cCCC
Q 005389 227 IMDR 230 (699)
Q Consensus 227 ~~~~ 230 (699)
+.+.
T Consensus 115 lv~~ 118 (581)
T TIGR00475 115 RVNE 118 (581)
T ss_pred CCCH
Confidence 9864
No 166
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.82 E-value=4.3e-08 Score=91.93 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=25.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~ 78 (699)
++|+++|..+||||||+|+|++.. +|....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~ 31 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYK 31 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCC
Confidence 579999999999999999999987 455443
No 167
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.82 E-value=4.8e-08 Score=94.19 Aligned_cols=115 Identities=18% Similarity=0.262 Sum_probs=68.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+|+|+.++|||||++.+++..|.+... .|... . +
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~t~~~---~---------~------------------------------ 37 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHI--STIGV---D---------F------------------------------ 37 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCC--Cceee---E---------E------------------------------
Confidence 59999999999999999999887743311 11110 0 0
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---H
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---L 205 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l 205 (699)
....+.+.+ ....+.++||||-. ....+...|+..++++++++ +.+..-+-.+. +
T Consensus 38 -------~~~~~~~~~-~~~~l~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~-d~~~~~sf~~~~~~~ 95 (161)
T cd04117 38 -------KMKTIEVDG-IKVRIQIWDTAGQE-------------RYQTITKQYYRRAQGIFLVY-DISSERSYQHIMKWV 95 (161)
T ss_pred -------EEEEEEECC-EEEEEEEEeCCCcH-------------hHHhhHHHHhcCCcEEEEEE-ECCCHHHHHHHHHHH
Confidence 000111111 11358899999932 44556777899998665554 33322111122 2
Q ss_pred HHHHhhCCCCCcEEEeecccccCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
..++...+...+.++|.||.|+..
T Consensus 96 ~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 96 SDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred HHHHHhCCCCCeEEEEEECccccc
Confidence 222334445688999999999864
No 168
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.81 E-value=3.3e-08 Score=96.64 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
..+|+++|.+++|||||+++|++..+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~ 40 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEV 40 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC
Confidence 45899999999999999999987765
No 169
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.81 E-value=8.7e-08 Score=94.72 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=41.6
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---HHHHHHHhhCCCCCcEEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~dp~g~rti~VlTK 224 (699)
..+.+|||+|- +.+..+...|+++++++++++ +......-. .++..++...+...+ |+|.||
T Consensus 49 ~~l~iwDt~G~-------------~~~~~~~~~~~~~a~~iilv~-D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK 113 (182)
T cd04128 49 ITFSIWDLGGQ-------------REFINMLPLVCNDAVAILFMF-DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTK 113 (182)
T ss_pred EEEEEEeCCCc-------------hhHHHhhHHHCcCCCEEEEEE-ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEc
Confidence 36899999993 244566777999998555554 443322212 233344444444445 789999
Q ss_pred cccCC
Q 005389 225 LDIMD 229 (699)
Q Consensus 225 ~D~~~ 229 (699)
+|+..
T Consensus 114 ~Dl~~ 118 (182)
T cd04128 114 YDLFA 118 (182)
T ss_pred hhccc
Confidence 99974
No 170
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.81 E-value=4.2e-08 Score=94.51 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=42.3
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhC----CCCCcEEEeec
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIAD----PDGYRTIGIIT 223 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d----p~g~rti~VlT 223 (699)
..+.|+||||.. ....+...|+++++++|++ .++....+-.++.+....+. ....+.++|+|
T Consensus 44 ~~~~l~D~~G~~-------------~~~~~~~~~~~~ad~~i~v-~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 109 (159)
T cd04150 44 ISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLIFV-VDSNDRERIGEAREELQRMLNEDELRDAVLLVFAN 109 (159)
T ss_pred EEEEEEECCCCH-------------hHHHHHHHHhcCCCEEEEE-EeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEE
Confidence 368999999942 4556677899999855555 44443221222222222221 12478999999
Q ss_pred ccccCC
Q 005389 224 KLDIMD 229 (699)
Q Consensus 224 K~D~~~ 229 (699)
|.|+.+
T Consensus 110 K~Dl~~ 115 (159)
T cd04150 110 KQDLPN 115 (159)
T ss_pred CCCCCC
Confidence 999964
No 171
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.81 E-value=4e-08 Score=97.50 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=42.2
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCC-cccch--HHHHHHHhhCCCCCcEEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS-DLANS--DALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~-d~~~~--~~l~l~~~~dp~g~rti~VlTK 224 (699)
..+.|+||||-. ..+.+...|++.++++||+..-.+. .+.+. .++..++...+ +.++++|.||
T Consensus 48 ~~l~i~Dt~G~~-------------~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK 113 (189)
T cd04134 48 IELSLWDTAGQE-------------EFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-GVKLVLVALK 113 (189)
T ss_pred EEEEEEECCCCh-------------hccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 368999999943 2333445578888877666532222 22221 12333333333 6899999999
Q ss_pred cccCCC
Q 005389 225 LDIMDR 230 (699)
Q Consensus 225 ~D~~~~ 230 (699)
+|+.+.
T Consensus 114 ~Dl~~~ 119 (189)
T cd04134 114 CDLREA 119 (189)
T ss_pred hhhccC
Confidence 999764
No 172
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.80 E-value=1.2e-07 Score=96.57 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=41.5
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---HHHHHHhhCCCCCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~dp~g~rti~VlTK~ 225 (699)
++.||||||.. ..+.+...|++.++++|++ .+.+...+-.. .+..+........++|+|.||+
T Consensus 45 ~l~iwDt~G~e-------------~~~~l~~~~~~~ad~~IlV-~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~ 110 (220)
T cd04126 45 NISIWDTAGRE-------------QFHGLGSMYCRGAAAVILT-YDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKL 110 (220)
T ss_pred EEEEEeCCCcc-------------cchhhHHHHhccCCEEEEE-EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 68999999943 3345566788999855555 44443211111 1222223334467899999999
Q ss_pred ccCC
Q 005389 226 DIMD 229 (699)
Q Consensus 226 D~~~ 229 (699)
|+.+
T Consensus 111 DL~~ 114 (220)
T cd04126 111 DLTE 114 (220)
T ss_pred cccc
Confidence 9975
No 173
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.80 E-value=8.4e-08 Score=99.56 Aligned_cols=24 Identities=25% Similarity=0.672 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
+|+|+|..++|||||++.+++..|
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f 25 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF 25 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 699999999999999999998776
No 174
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.79 E-value=5.3e-08 Score=90.01 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=44.5
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH----HHHHhhCCCCCcEEEeec
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL----QIAGIADPDGYRTIGIIT 223 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l----~l~~~~dp~g~rti~VlT 223 (699)
..++++|+||.... ......++...+ .+++|.++.......+.. .........+.++++|+|
T Consensus 45 ~~~~l~D~~g~~~~-------------~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~n 110 (157)
T cd00882 45 VKLQIWDTAGQERF-------------RSLRRLYYRGAD-GIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGN 110 (157)
T ss_pred EEEEEEecCChHHH-------------HhHHHHHhcCCC-EEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEe
Confidence 36899999996532 122256777887 555555666544333322 123344455799999999
Q ss_pred ccccCCCc
Q 005389 224 KLDIMDRG 231 (699)
Q Consensus 224 K~D~~~~~ 231 (699)
|+|+....
T Consensus 111 k~D~~~~~ 118 (157)
T cd00882 111 KIDLPEER 118 (157)
T ss_pred cccccccc
Confidence 99998653
No 175
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.79 E-value=7.8e-08 Score=94.33 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=68.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
-+|+|||..++|||||++.+++..| +....+++... +.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~-------------~~---------------------------- 39 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDN-------------YA---------------------------- 39 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeee-------------eE----------------------------
Confidence 3699999999999999999998776 32221111100 00
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-ccch--HH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LANS--DA 204 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~~--~~ 204 (699)
..+.+.+ ....+.||||||-. ....+...|+++++++||++...+.. +.+. .+
T Consensus 40 ----------~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w 95 (175)
T cd01874 40 ----------VTVMIGG-EPYTLGLFDTAGQE-------------DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 95 (175)
T ss_pred ----------EEEEECC-EEEEEEEEECCCcc-------------chhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHH
Confidence 0111111 11368999999953 23344556888998666665433321 2211 12
Q ss_pred HHHHHhhCCCCCcEEEeecccccCCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+...+...+ ..++|+|.||.|+.+.
T Consensus 96 ~~~i~~~~~-~~piilvgnK~Dl~~~ 120 (175)
T cd01874 96 VPEITHHCP-KTPFLLVGTQIDLRDD 120 (175)
T ss_pred HHHHHHhCC-CCCEEEEEECHhhhhC
Confidence 223333333 5899999999998653
No 176
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.79 E-value=5.7e-08 Score=97.80 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=42.5
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCC-CeeEEEEecCCCcccchHHHH----HHH--hhCCCCCcEEEe
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQP-SCLILAVTPANSDLANSDALQ----IAG--IADPDGYRTIGI 221 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~-~~iIL~V~~a~~d~~~~~~l~----l~~--~~dp~g~rti~V 221 (699)
.+.|||+||.. .++.+...|++.. +++|++|......-.-.++.. +.. .....+.++++|
T Consensus 49 ~~~l~D~pG~~-------------~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv 115 (203)
T cd04105 49 KFRLVDVPGHP-------------KLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIA 115 (203)
T ss_pred eEEEEECCCCH-------------HHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEE
Confidence 58999999943 4566677888887 755555544332111112111 111 122347999999
Q ss_pred ecccccCCC
Q 005389 222 ITKLDIMDR 230 (699)
Q Consensus 222 lTK~D~~~~ 230 (699)
+||.|+...
T Consensus 116 ~NK~Dl~~a 124 (203)
T cd04105 116 CNKQDLFTA 124 (203)
T ss_pred ecchhhccc
Confidence 999999754
No 177
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.78 E-value=3.7e-08 Score=115.56 Aligned_cols=119 Identities=16% Similarity=0.238 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
..|.|+|+|..++|||||+++|.+..+.....+..|.-.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i----------------------------------------- 281 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKI----------------------------------------- 281 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCcccccc-----------------------------------------
Confidence 568999999999999999999998765221111111100
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
....+.+... .....++||||||. +.+..+...++..++.+||+ +++......+ ..
T Consensus 282 --------~~~~v~~~~~-~~~~kItfiDTPGh-------------e~F~~mr~rg~~~aDiaILV-VDA~dGv~~Q-T~ 337 (742)
T CHL00189 282 --------GAYEVEFEYK-DENQKIVFLDTPGH-------------EAFSSMRSRGANVTDIAILI-IAADDGVKPQ-TI 337 (742)
T ss_pred --------ceEEEEEEec-CCceEEEEEECCcH-------------HHHHHHHHHHHHHCCEEEEE-EECcCCCChh-hH
Confidence 0000011100 11246999999993 35667777888989855555 4665543332 23
Q ss_pred HHHHhhCCCCCcEEEeecccccCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
..++.+...+.|+|+|+||+|+..
T Consensus 338 E~I~~~k~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 338 EAINYIQAANVPIIVAINKIDKAN 361 (742)
T ss_pred HHHHHHHhcCceEEEEEECCCccc
Confidence 444555556789999999999975
No 178
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.78 E-value=6.7e-08 Score=112.37 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=41.9
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCc-EEEeeccccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKLDI 227 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~r-ti~VlTK~D~ 227 (699)
.++||||||.. ..+..+ ..++...| ++++|++++.+...++ .+.+..+...+.+ .|+|+||+|+
T Consensus 52 ~i~~IDtPGhe------------~fi~~m-~~g~~~~D-~~lLVVda~eg~~~qT-~ehl~il~~lgi~~iIVVlNKiDl 116 (614)
T PRK10512 52 VLGFIDVPGHE------------KFLSNM-LAGVGGID-HALLVVACDDGVMAQT-REHLAILQLTGNPMLTVALTKADR 116 (614)
T ss_pred EEEEEECCCHH------------HHHHHH-HHHhhcCC-EEEEEEECCCCCcHHH-HHHHHHHHHcCCCeEEEEEECCcc
Confidence 58999999941 234444 45577888 5555667776654443 2333333333445 5799999999
Q ss_pred CCC
Q 005389 228 MDR 230 (699)
Q Consensus 228 ~~~ 230 (699)
.++
T Consensus 117 v~~ 119 (614)
T PRK10512 117 VDE 119 (614)
T ss_pred CCH
Confidence 853
No 179
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.78 E-value=5e-08 Score=99.38 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=42.3
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---HHHHHHHhhCCCCCcEEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~dp~g~rti~VlTK 224 (699)
..+.||||||.. ....+...|++.++++|+++. .+...+-. .++..++... .+.++++|.||
T Consensus 62 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~~~~~ilvfD-~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK 126 (219)
T PLN03071 62 IRFYCWDTAGQE-------------KFGGLRDGYYIHGQCAIIMFD-VTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126 (219)
T ss_pred EEEEEEECCCch-------------hhhhhhHHHcccccEEEEEEe-CCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEc
Confidence 368999999943 345666678999986666544 33322111 2223333333 36899999999
Q ss_pred cccCC
Q 005389 225 LDIMD 229 (699)
Q Consensus 225 ~D~~~ 229 (699)
+|+.+
T Consensus 127 ~Dl~~ 131 (219)
T PLN03071 127 VDVKN 131 (219)
T ss_pred hhhhh
Confidence 99853
No 180
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.78 E-value=1.3e-07 Score=92.55 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=42.7
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-ccch--HHHHHHHhhCCCCCcEEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LANS--DALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~~--~~l~l~~~~dp~g~rti~VlTK 224 (699)
..+.|+||||-. ....+...|+++++++|+++...+.+ +..- .++..++...+ ..++++|.||
T Consensus 49 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK 114 (174)
T cd01871 49 VNLGLWDTAGQE-------------DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTK 114 (174)
T ss_pred EEEEEEECCCch-------------hhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeC
Confidence 368899999942 33455566889998766665443321 1111 12233333333 5899999999
Q ss_pred cccCCC
Q 005389 225 LDIMDR 230 (699)
Q Consensus 225 ~D~~~~ 230 (699)
+|+.+.
T Consensus 115 ~Dl~~~ 120 (174)
T cd01871 115 LDLRDD 120 (174)
T ss_pred hhhccC
Confidence 999643
No 181
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.77 E-value=2.3e-08 Score=96.50 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
.|+|||+.++|||||++++++..|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~ 24 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF 24 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc
Confidence 489999999999999999988765
No 182
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.77 E-value=2e-07 Score=95.74 Aligned_cols=117 Identities=17% Similarity=0.211 Sum_probs=70.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
..-.|+|||+.++|||||++.+++..| +.... |+... .+.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y~-----pTi~~--------~~~-------------------------- 51 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCY-PETYV-----PTVFE--------NYT-------------------------- 51 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCC-CCCcC-----Cceee--------eeE--------------------------
Confidence 345799999999999999999998876 22211 11100 000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-ccc--h
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LAN--S 202 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~--~ 202 (699)
..+.+.+ ....|.||||+|- +.++.+...|+++++++||+..-.+.+ +.. .
T Consensus 52 ------------~~i~~~~-~~v~l~iwDTaG~-------------e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~ 105 (232)
T cd04174 52 ------------AGLETEE-QRVELSLWDTSGS-------------PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALK 105 (232)
T ss_pred ------------EEEEECC-EEEEEEEEeCCCc-------------hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHH
Confidence 0111111 1236899999992 355667778999999666554433222 111 1
Q ss_pred HHHHHHHhhCCCCCcEEEeecccccCC
Q 005389 203 DALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 203 ~~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.++..++...+ ..++|+|.||+|+.+
T Consensus 106 ~w~~~i~~~~~-~~piilVgNK~DL~~ 131 (232)
T cd04174 106 KWKAEIMDYCP-STRILLIGCKTDLRT 131 (232)
T ss_pred HHHHHHHHhCC-CCCEEEEEECccccc
Confidence 23344444444 578999999999854
No 183
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.76 E-value=1.8e-07 Score=94.14 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCc
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP 74 (699)
+|+++|+.++|||||++.+++..|.+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~ 27 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG 27 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 69999999999999999999987643
No 184
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.75 E-value=4.3e-08 Score=113.24 Aligned_cols=116 Identities=21% Similarity=0.264 Sum_probs=72.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
..|.|+++|..++|||||+++|.+..+.....+..|.-. +.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~i--------------g~------------------------- 126 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHI--------------GA------------------------- 126 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecc--------------eE-------------------------
Confidence 568999999999999999999998876332222111110 00
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
..+.+ ++...++||||||.. .+..+..++....|.+||+| +++.....+ ..
T Consensus 127 ------------~~v~~--~~~~~i~~iDTPGhe-------------~F~~~r~rga~~aDiaILVV-da~dgv~~q-T~ 177 (587)
T TIGR00487 127 ------------YHVEN--EDGKMITFLDTPGHE-------------AFTSMRARGAKVTDIVVLVV-AADDGVMPQ-TI 177 (587)
T ss_pred ------------EEEEE--CCCcEEEEEECCCCc-------------chhhHHHhhhccCCEEEEEE-ECCCCCCHh-HH
Confidence 01111 111258999999953 33445557788888555554 665443322 23
Q ss_pred HHHHhhCCCCCcEEEeecccccCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
..++.+...+.++|+|+||+|+.+
T Consensus 178 e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 178 EAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred HHHHHHHHcCCCEEEEEECccccc
Confidence 444555556789999999999864
No 185
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.75 E-value=7.6e-08 Score=93.83 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
+|+++|+.++|||||+..+++..|
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~ 25 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999988765
No 186
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.75 E-value=1.2e-07 Score=109.91 Aligned_cols=132 Identities=15% Similarity=0.245 Sum_probs=74.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
...|+++|..++|||||+++|+... +..+++. . +....|..+..++
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~------g~i~~~~-------------~-------~~~~~D~~~~Ere-------- 48 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYT------GAISERE-------------M-------REQVLDSMDLERE-------- 48 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHc------CCCcccc-------------c-------cccccCCChHHHh--------
Confidence 4569999999999999999998753 1111110 0 0011111111110
Q ss_pred cCCCCCccccceEEEEe--cCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH
Q 005389 127 AGGNKGVSDKQIRLKIF--SPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~--~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (699)
.+..+....+.+... ......+.||||||.. .+...+..|++.++++| +|+++......+..
T Consensus 49 --rGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~-------------dF~~~v~~~l~~aD~aI-LVvDat~g~~~qt~ 112 (595)
T TIGR01393 49 --RGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV-------------DFSYEVSRSLAACEGAL-LLVDAAQGIEAQTL 112 (595)
T ss_pred --cCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH-------------HHHHHHHHHHHhCCEEE-EEecCCCCCCHhHH
Confidence 111222233333332 1223478999999964 34456678899998555 55566655444332
Q ss_pred HHHHHhhCCCCCcEEEeecccccCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.....+...+.++|+|+||+|+.+
T Consensus 113 -~~~~~~~~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 113 -ANVYLALENDLEIIPVINKIDLPS 136 (595)
T ss_pred -HHHHHHHHcCCCEEEEEECcCCCc
Confidence 222222224678999999999864
No 187
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.74 E-value=6.2e-08 Score=98.80 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=46.8
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
..+.||||||..+ +...+..+++.++++|| |+++......+. ..+++.+...+.+.|+|+||+|+
T Consensus 73 ~~i~iiDTPG~~~-------------f~~~~~~~l~~aD~~il-VvD~~~g~~~~t-~~~l~~~~~~~~p~ilviNKiD~ 137 (222)
T cd01885 73 YLINLIDSPGHVD-------------FSSEVTAALRLCDGALV-VVDAVEGVCVQT-ETVLRQALKERVKPVLVINKIDR 137 (222)
T ss_pred eEEEEECCCCccc-------------cHHHHHHHHHhcCeeEE-EEECCCCCCHHH-HHHHHHHHHcCCCEEEEEECCCc
Confidence 4689999999652 33456778899985555 555655544433 45566665667899999999998
Q ss_pred C
Q 005389 228 M 228 (699)
Q Consensus 228 ~ 228 (699)
.
T Consensus 138 ~ 138 (222)
T cd01885 138 L 138 (222)
T ss_pred c
Confidence 6
No 188
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.74 E-value=5e-08 Score=99.51 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
+|+|+|+.|+|||||++.+++..+
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~ 25 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEY 25 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCc
Confidence 699999999999999999987655
No 189
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.73 E-value=3.8e-08 Score=116.39 Aligned_cols=115 Identities=21% Similarity=0.274 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
..|.|+|+|..++|||||+++|.+..+.....+..|...
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~i----------------------------------------- 327 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHI----------------------------------------- 327 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeec-----------------------------------------
Confidence 569999999999999999999987765211111111000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
. ...+.+ ++ ..++||||||.. .+..+...++...|.+|| |+++......+. .
T Consensus 328 --------g--a~~v~~--~~-~~ItfiDTPGhe-------------~F~~m~~rga~~aDiaIL-VVdAddGv~~qT-~ 379 (787)
T PRK05306 328 --------G--AYQVET--NG-GKITFLDTPGHE-------------AFTAMRARGAQVTDIVVL-VVAADDGVMPQT-I 379 (787)
T ss_pred --------c--EEEEEE--CC-EEEEEEECCCCc-------------cchhHHHhhhhhCCEEEE-EEECCCCCCHhH-H
Confidence 0 001111 11 358999999953 234555677888885555 456655433322 3
Q ss_pred HHHHhhCCCCCcEEEeecccccCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
..++.+...+.++|+|+||+|+..
T Consensus 380 e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 380 EAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred HHHHHHHhcCCcEEEEEECccccc
Confidence 444555556789999999999964
No 190
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.73 E-value=9.2e-08 Score=92.82 Aligned_cols=27 Identities=30% Similarity=0.687 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
.-.+|+|+|..+||||||+++|.|..+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~ 39 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI 39 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC
Confidence 467899999999999999999999854
No 191
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.72 E-value=9.8e-08 Score=95.04 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=43.5
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---HHHHHHhhCCCCCcEEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~dp~g~rti~VlTK 224 (699)
..|.|+||||- +..+.+...|++.++++||++. .+...+-.. ++..+....+ +.++|+|.||
T Consensus 55 ~~l~iwDt~G~-------------~~~~~l~~~~~~~ad~illVfD-~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK 119 (189)
T cd04121 55 VKLQLWDTSGQ-------------GRFCTIFRSYSRGAQGIILVYD-ITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNR 119 (189)
T ss_pred EEEEEEeCCCc-------------HHHHHHHHHHhcCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 36899999993 3556777889999986665554 332222222 2333333333 6899999999
Q ss_pred cccCC
Q 005389 225 LDIMD 229 (699)
Q Consensus 225 ~D~~~ 229 (699)
.|+.+
T Consensus 120 ~DL~~ 124 (189)
T cd04121 120 LHLAF 124 (189)
T ss_pred ccchh
Confidence 99964
No 192
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.72 E-value=1e-07 Score=110.55 Aligned_cols=70 Identities=26% Similarity=0.329 Sum_probs=44.9
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhc--CCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D 226 (699)
.+.+|||||..+..... .++ .+...|+. .++ ++++|+|+.... ..+.+..++...+.++++|+||+|
T Consensus 42 ~i~lvDtPG~~~~~~~s----~~e---~v~~~~l~~~~aD-vvI~VvDat~le---r~l~l~~ql~~~~~PiIIVlNK~D 110 (591)
T TIGR00437 42 DIEIVDLPGIYSLTTFS----LEE---EVARDYLLNEKPD-LVVNVVDASNLE---RNLYLTLQLLELGIPMILALNLVD 110 (591)
T ss_pred EEEEEECCCccccCccc----hHH---HHHHHHHhhcCCC-EEEEEecCCcch---hhHHHHHHHHhcCCCEEEEEehhH
Confidence 58999999986542211 111 23344554 555 777777776522 224555566667899999999999
Q ss_pred cCC
Q 005389 227 IMD 229 (699)
Q Consensus 227 ~~~ 229 (699)
+.+
T Consensus 111 l~~ 113 (591)
T TIGR00437 111 EAE 113 (591)
T ss_pred HHH
Confidence 864
No 193
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.71 E-value=8.2e-08 Score=113.80 Aligned_cols=135 Identities=15% Similarity=0.181 Sum_probs=81.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
....|+|+|..++|||||+|+|++..- . +... +.. .+|....|+....++
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g------~-~~~~------~~~----------~~g~~~~D~~~~e~~------- 58 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTG------R-IHKI------GEV----------HDGAATMDWMEQEKE------- 58 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCC------C-cccc------ccc----------cCCccccCCCHHHHh-------
Confidence 456899999999999999999986421 0 0000 000 001122233222111
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
.+++-+.....+.+.+ ..++||||||..+- ...+..+++..| ++++|+++......++ .
T Consensus 59 -----rgiti~~~~~~~~~~~-~~i~liDTPG~~~~-------------~~~~~~~l~~~D-~~ilVvda~~g~~~~~-~ 117 (689)
T TIGR00484 59 -----RGITITSAATTVFWKG-HRINIIDTPGHVDF-------------TVEVERSLRVLD-GAVAVLDAVGGVQPQS-E 117 (689)
T ss_pred -----cCCCEecceEEEEECC-eEEEEEECCCCcch-------------hHHHHHHHHHhC-EEEEEEeCCCCCChhH-H
Confidence 3344444444444443 47999999998632 123557788888 5555556665554443 4
Q ss_pred HHHHhhCCCCCcEEEeecccccCCCc
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
.+++.+...+.+.++|+||+|+....
T Consensus 118 ~~~~~~~~~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 118 TVWRQANRYEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 55566666678999999999998543
No 194
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.70 E-value=1e-07 Score=110.22 Aligned_cols=134 Identities=17% Similarity=0.221 Sum_probs=74.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHh
Q 005389 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (699)
Q Consensus 44 ~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (699)
.+..|.|+++|..++|||||||+|.|..+.-...|..|+..- ...... .+..
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig-~~~~~~----~~~~----------------------- 54 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIG-ATEVPI----DVIE----------------------- 54 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeec-eeeccc----cccc-----------------------
Confidence 356799999999999999999999987543222222221110 000000 0000
Q ss_pred hhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH
Q 005389 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (699)
Q Consensus 124 ~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~ 203 (699)
...+ .....+..++. .+.++||||||.. .+..+...++..++ ++++|+++......+.
T Consensus 55 -~~~~----~~~~~~~~~~~---~~~i~~iDTPG~e-------------~f~~~~~~~~~~aD-~~IlVvDa~~g~~~qt 112 (586)
T PRK04004 55 -KIAG----PLKKPLPIKLK---IPGLLFIDTPGHE-------------AFTNLRKRGGALAD-IAILVVDINEGFQPQT 112 (586)
T ss_pred -cccc----eeccccccccc---cCCEEEEECCChH-------------HHHHHHHHhHhhCC-EEEEEEECCCCCCHhH
Confidence 0000 00000011111 1358999999943 34455566778888 4555556665443332
Q ss_pred HHHHHHhhCCCCCcEEEeecccccC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
...+..+...+.++++|+||+|+.
T Consensus 113 -~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 113 -IEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred -HHHHHHHHHcCCCEEEEEECcCCc
Confidence 333344444678999999999986
No 195
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.70 E-value=3.5e-07 Score=90.12 Aligned_cols=114 Identities=15% Similarity=0.197 Sum_probs=69.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+|+|+.++|||||++.+++..| |.... +|-.. .+.
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~-~t~~~------------~~~----------------------------- 39 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETYV-PTVFE------------NYT----------------------------- 39 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCcC-CceEE------------EEE-----------------------------
Confidence 699999999999999999998875 33221 11100 000
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-ccc--hHHH
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LAN--SDAL 205 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~--~~~l 205 (699)
..+.+.+ ....+.||||||- +..+.+...|+++++++||+..-.+.. +.. ..+.
T Consensus 40 ---------~~~~~~~-~~~~l~iwDt~G~-------------~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~ 96 (178)
T cd04131 40 ---------ASFEIDE-QRIELSLWDTSGS-------------PYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWR 96 (178)
T ss_pred ---------EEEEECC-EEEEEEEEECCCc-------------hhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHH
Confidence 0112221 1246899999993 234455667889998666555432211 111 2233
Q ss_pred HHHHhhCCCCCcEEEeecccccCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
..++...+ ..++++|.||+|+.+
T Consensus 97 ~~i~~~~~-~~~iilVgnK~DL~~ 119 (178)
T cd04131 97 GEIQEFCP-NTKVLLVGCKTDLRT 119 (178)
T ss_pred HHHHHHCC-CCCEEEEEEChhhhc
Confidence 34445444 578999999999864
No 196
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.69 E-value=3.5e-07 Score=91.03 Aligned_cols=116 Identities=18% Similarity=0.185 Sum_probs=69.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+|+|+.++|||||+..++...| +... .+|-.. .+.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f-~~~~-~~t~~~------------~~~---------------------------- 41 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF-PKEY-IPTVFD------------NYS---------------------------- 41 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CcCC-CCceEe------------eeE----------------------------
Confidence 4799999999999999999998765 2221 111000 000
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-ccch--HH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LANS--DA 204 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~~--~~ 204 (699)
..+.+.+ ....+.||||||- +..+.+...|+++++++|+++.-.+.+ +.+. .+
T Consensus 42 ----------~~~~~~~-~~~~l~i~Dt~G~-------------e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w 97 (191)
T cd01875 42 ----------AQTAVDG-RTVSLNLWDTAGQ-------------EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKW 97 (191)
T ss_pred ----------EEEEECC-EEEEEEEEECCCc-------------hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 0111111 1246899999993 356667778999999666665433321 1111 11
Q ss_pred HHHHHhhCCCCCcEEEeecccccCCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
...++... .+.++++|.||.|+.+.
T Consensus 98 ~~~i~~~~-~~~piilvgNK~DL~~~ 122 (191)
T cd01875 98 HPEVCHHC-PNVPILLVGTKKDLRND 122 (191)
T ss_pred HHHHHhhC-CCCCEEEEEeChhhhcC
Confidence 22222222 36899999999999643
No 197
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.69 E-value=1.5e-07 Score=95.42 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=43.7
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
..+.||||||..+ +...+..++..++++|++| ++....... ..++.+.+...+.+.++|+||+|+
T Consensus 71 ~~i~iiDtpG~~~-------------f~~~~~~~~~~aD~~llVv-D~~~~~~~~-~~~~~~~~~~~~~p~iiviNK~D~ 135 (213)
T cd04167 71 YLFNIIDTPGHVN-------------FMDEVAAALRLSDGVVLVV-DVVEGVTSN-TERLIRHAILEGLPIVLVINKIDR 135 (213)
T ss_pred EEEEEEECCCCcc-------------hHHHHHHHHHhCCEEEEEE-ECCCCCCHH-HHHHHHHHHHcCCCEEEEEECccc
Confidence 4689999999642 2344567888888555555 554443322 234444444456899999999998
Q ss_pred C
Q 005389 228 M 228 (699)
Q Consensus 228 ~ 228 (699)
+
T Consensus 136 ~ 136 (213)
T cd04167 136 L 136 (213)
T ss_pred C
Confidence 7
No 198
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=4.6e-07 Score=83.87 Aligned_cols=122 Identities=18% Similarity=0.268 Sum_probs=88.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
-|..||+||.-++||+.|+..++.- ++|-|.|.+-..-
T Consensus 6 flfkivlvgnagvgktclvrrftqg-lfppgqgatigvd----------------------------------------- 43 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVD----------------------------------------- 43 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeee-----------------------------------------
Confidence 3678999999999999999999876 4577776422211
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEe-cCCCc-ccchH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVT-PANSD-LANSD 203 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~-~a~~d-~~~~~ 203 (699)
.-...+++.+.. ..|.+|||.| ++.++.++.+|.+.++++||+.. ++... -.-.+
T Consensus 44 ---------fmiktvev~gek-iklqiwdtag-------------qerfrsitqsyyrsahalilvydiscqpsfdclpe 100 (213)
T KOG0095|consen 44 ---------FMIKTVEVNGEK-IKLQIWDTAG-------------QERFRSITQSYYRSAHALILVYDISCQPSFDCLPE 100 (213)
T ss_pred ---------EEEEEEEECCeE-EEEEEeeccc-------------hHHHHHHHHHHhhhcceEEEEEecccCcchhhhHH
Confidence 111133443333 3699999999 67999999999999998888743 33322 23456
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCCcc
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDRGT 232 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~~~ 232 (699)
+++-+.++.....-.|.|-||+|+.+..+
T Consensus 101 wlreie~yan~kvlkilvgnk~d~~drre 129 (213)
T KOG0095|consen 101 WLREIEQYANNKVLKILVGNKIDLADRRE 129 (213)
T ss_pred HHHHHHHHhhcceEEEeeccccchhhhhh
Confidence 67777777777777899999999987533
No 199
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.67 E-value=3.1e-07 Score=106.68 Aligned_cols=132 Identities=16% Similarity=0.254 Sum_probs=74.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
...|+|||..++|||||+++|+... |..+++. . +..+.|..+..++
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~t------g~i~~~~-------------~-------~~~~lD~~~~Ere-------- 52 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELT------GTLSERE-------------M-------KAQVLDSMDLERE-------- 52 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc------CCCcccc-------------c-------ccccccCchHHhh--------
Confidence 4579999999999999999998642 1111110 0 1111222211111
Q ss_pred cCCCCCccccceEEEEec--CCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH
Q 005389 127 AGGNKGVSDKQIRLKIFS--PHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~--p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (699)
.+..+....+.+.... .....+.||||||.. .+...+..|++.++++| +|+++......+.
T Consensus 53 --rGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~-------------dF~~~v~~sl~~aD~aI-LVVDas~gv~~qt- 115 (600)
T PRK05433 53 --RGITIKAQAVRLNYKAKDGETYILNLIDTPGHV-------------DFSYEVSRSLAACEGAL-LVVDASQGVEAQT- 115 (600)
T ss_pred --cCCcccccEEEEEEEccCCCcEEEEEEECCCcH-------------HHHHHHHHHHHHCCEEE-EEEECCCCCCHHH-
Confidence 1112222333333321 113468999999964 23455667888898555 4556665544333
Q ss_pred HHHHHhhCCCCCcEEEeecccccCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
......+...+.++|+|+||+|+.+
T Consensus 116 ~~~~~~~~~~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 116 LANVYLALENDLEIIPVLNKIDLPA 140 (600)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCc
Confidence 2222223334688999999999864
No 200
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.66 E-value=7.6e-08 Score=101.59 Aligned_cols=139 Identities=17% Similarity=0.277 Sum_probs=75.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
.|.|||..|+|||||||+|++..+.+......+... . ..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~---~---~~----------------------------------- 44 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSA---S---IS----------------------------------- 44 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S-----------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccccccccccc---c---cc-----------------------------------
Confidence 589999999999999999999977555421100000 0 00
Q ss_pred CCCCccccceEEEEecC-CccceEEEeCCCCCCCCC-CCCchHHHHHHHHHHHHHhc-------------CCCeeEEEEe
Q 005389 129 GNKGVSDKQIRLKIFSP-HVLDITLVDLPGITKVPV-GEQPADIEARIRTMIMSYIK-------------QPSCLILAVT 193 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p-~~~~LtLVDlPGl~~~~~-~~q~~di~~~i~~lv~~yi~-------------~~~~iIL~V~ 193 (699)
....+. .....+... ...+|++|||||+.+.-. ......+...+.+.-..|+. +-|+.++++.
T Consensus 45 ~~~~i~--~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~ 122 (281)
T PF00735_consen 45 RTLEIE--ERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIP 122 (281)
T ss_dssp SCEEEE--EEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-
T ss_pred ccccee--eEEEEeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEc
Confidence 000000 001111111 124799999999975421 11123344444444445554 1255666666
Q ss_pred cCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCcc
Q 005389 194 PANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 232 (699)
Q Consensus 194 ~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~ 232 (699)
+....+...| ++..+.+.. ..++|=|+.|.|.+.+.+
T Consensus 123 pt~~~L~~~D-i~~mk~Ls~-~vNvIPvIaKaD~lt~~e 159 (281)
T PF00735_consen 123 PTGHGLKPLD-IEFMKRLSK-RVNVIPVIAKADTLTPEE 159 (281)
T ss_dssp TTSSSS-HHH-HHHHHHHTT-TSEEEEEESTGGGS-HHH
T ss_pred CCCccchHHH-HHHHHHhcc-cccEEeEEecccccCHHH
Confidence 6667777767 677788876 478999999999997544
No 201
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.65 E-value=8.3e-07 Score=89.70 Aligned_cols=120 Identities=19% Similarity=0.290 Sum_probs=78.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc--cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
-+|+|+|..|||||||+++|++..+. .+..+ .+..+....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~-~~~~~t~~~~~~~~~~------------------------------------- 47 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP-EGYPPTIGNLDPAKTI------------------------------------- 47 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc-ccCCCceeeeeEEEEE-------------------------------------
Confidence 47999999999999999999998763 22211 111111000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCC---cccch
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS---DLANS 202 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~---d~~~~ 202 (699)
........+.+|||+| .+.++.+...|...++++++++..... +....
T Consensus 48 ----------------~~~~~~~~~~~~Dt~g-------------q~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~ 98 (219)
T COG1100 48 ----------------EPYRRNIKLQLWDTAG-------------QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTE 98 (219)
T ss_pred ----------------EeCCCEEEEEeecCCC-------------HHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHH
Confidence 0000023589999999 346778888999999977777665441 22222
Q ss_pred HHHHHHHhhCCCCCcEEEeecccccCCCcccH
Q 005389 203 DALQIAGIADPDGYRTIGIITKLDIMDRGTDA 234 (699)
Q Consensus 203 ~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~ 234 (699)
.+...++...+...+++.|.||+|+.+.....
T Consensus 99 ~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~ 130 (219)
T COG1100 99 EWLEELRELAPDDVPILLVGNKIDLFDEQSSS 130 (219)
T ss_pred HHHHHHHHhCCCCceEEEEecccccccchhHH
Confidence 33444555555578999999999998765433
No 202
>PRK00007 elongation factor G; Reviewed
Probab=98.65 E-value=1.5e-07 Score=111.55 Aligned_cols=135 Identities=16% Similarity=0.182 Sum_probs=82.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
+...|+|+|..++|||||+|+|+...- . ++.. +... .+....|+.....+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g------~-~~~~------g~v~----------~~~~~~D~~~~E~~------- 58 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTG------V-NHKI------GEVH----------DGAATMDWMEQEQE------- 58 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcC------C-cccc------cccc----------CCcccCCCCHHHHh-------
Confidence 456899999999999999999974310 0 0000 0000 01122333322211
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
.+++-+...+.+.+.+ ..++||||||..+ ... -+...+...| .+++|+++..+...++ .
T Consensus 59 -----rg~ti~~~~~~~~~~~-~~~~liDTPG~~~------------f~~-ev~~al~~~D-~~vlVvda~~g~~~qt-~ 117 (693)
T PRK00007 59 -----RGITITSAATTCFWKD-HRINIIDTPGHVD------------FTI-EVERSLRVLD-GAVAVFDAVGGVEPQS-E 117 (693)
T ss_pred -----CCCCEeccEEEEEECC-eEEEEEeCCCcHH------------HHH-HHHHHHHHcC-EEEEEEECCCCcchhh-H
Confidence 3444444444444433 4799999999642 112 2456667777 5555667777766655 5
Q ss_pred HHHHhhCCCCCcEEEeecccccCCCc
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
.+++.+...+.+.|+|+||+|+....
T Consensus 118 ~~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 118 TVWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 67777777889999999999998643
No 203
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=7.8e-08 Score=93.55 Aligned_cols=119 Identities=18% Similarity=0.268 Sum_probs=81.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
-+..|+|+|+.|+|||-|+-.+.+-.| +-...
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f-~e~~~----------------------------------------------- 39 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTF-TESYI----------------------------------------------- 39 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCc-chhhc-----------------------------------------------
Confidence 367899999999999999999988765 11111
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCC--cccc-h
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS--DLAN-S 202 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~--d~~~-~ 202 (699)
...|+......+++.+... .|.+|||.| +++++.++.+|.+++|.||++.. ... .+.+ .
T Consensus 40 ---sTIGVDf~~rt~e~~gk~i-KlQIWDTAG-------------QERFrtit~syYR~ahGii~vyD-iT~~~SF~~v~ 101 (205)
T KOG0084|consen 40 ---STIGVDFKIRTVELDGKTI-KLQIWDTAG-------------QERFRTITSSYYRGAHGIIFVYD-ITKQESFNNVK 101 (205)
T ss_pred ---ceeeeEEEEEEeeecceEE-EEEeeeccc-------------cHHHhhhhHhhccCCCeEEEEEE-cccHHHhhhHH
Confidence 1123344445566666654 799999999 57999999999999997777642 221 1111 1
Q ss_pred HHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 203 DALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 203 ~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+++-.+.......+.+.|-||+|+.+.
T Consensus 102 ~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 102 RWIQEIDRYASENVPKLLVGNKCDLTEK 129 (205)
T ss_pred HHHHHhhhhccCCCCeEEEeeccccHhh
Confidence 2233333444456789999999999865
No 204
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.64 E-value=2.3e-07 Score=94.74 Aligned_cols=114 Identities=13% Similarity=0.170 Sum_probs=67.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+|||+.++||||||+.+++..| |....+ |-.. .|.
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~p-Ti~~------------~~~----------------------------- 39 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY-PGSYVP-TVFE------------NYT----------------------------- 39 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCccCC-cccc------------ceE-----------------------------
Confidence 699999999999999999998876 332211 1100 010
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH----
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---- 204 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---- 204 (699)
..+.+.+ ....|.||||+|- +.+..+...|++..+++||++. .....+-..+
T Consensus 40 ---------~~~~~~~-~~v~L~iwDt~G~-------------e~~~~l~~~~~~~~d~illvfd-is~~~Sf~~i~~~w 95 (222)
T cd04173 40 ---------ASFEIDK-RRIELNMWDTSGS-------------SYYDNVRPLAYPDSDAVLICFD-ISRPETLDSVLKKW 95 (222)
T ss_pred ---------EEEEECC-EEEEEEEEeCCCc-------------HHHHHHhHHhccCCCEEEEEEE-CCCHHHHHHHHHHH
Confidence 0111211 1246899999993 2445555668899996655554 3322111111
Q ss_pred HHHHHhhCCCCCcEEEeecccccCCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
....+... .+.++|+|.||+|+.+.
T Consensus 96 ~~~~~~~~-~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 96 QGETQEFC-PNAKVVLVGCKLDMRTD 120 (222)
T ss_pred HHHHHhhC-CCCCEEEEEECcccccc
Confidence 12223333 35899999999999753
No 205
>PRK12739 elongation factor G; Reviewed
Probab=98.64 E-value=1.5e-07 Score=111.52 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=82.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
....|+|||..++|||||+|+|+...- . ++.. +... .|....|+.....
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g------~-~~~~------~~v~----------~~~~~~D~~~~E~-------- 55 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTG------K-SHKI------GEVH----------DGAATMDWMEQEQ-------- 55 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCC------C-cccc------cccc----------CCccccCCChhHh--------
Confidence 456799999999999999999975421 0 0000 0000 0112223322211
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
..+++-+.....+.+. ...++||||||..+ +...+..++...| .+++|+++......++ .
T Consensus 56 ----~rgiti~~~~~~~~~~-~~~i~liDTPG~~~-------------f~~e~~~al~~~D-~~ilVvDa~~g~~~qt-~ 115 (691)
T PRK12739 56 ----ERGITITSAATTCFWK-GHRINIIDTPGHVD-------------FTIEVERSLRVLD-GAVAVFDAVSGVEPQS-E 115 (691)
T ss_pred ----hcCCCccceeEEEEEC-CEEEEEEcCCCHHH-------------HHHHHHHHHHHhC-eEEEEEeCCCCCCHHH-H
Confidence 1344444434444443 24799999999642 2224677888888 5566667776665554 4
Q ss_pred HHHHhhCCCCCcEEEeecccccCCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+++.+...+.+.|+|+||+|+...
T Consensus 116 ~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 116 TVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCC
Confidence 6667777778999999999999854
No 206
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.63 E-value=5.2e-08 Score=106.05 Aligned_cols=148 Identities=18% Similarity=0.178 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHHhCCCC--CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceee
Q 005389 25 VIPLVNKLQDIFAQLGSQS--TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFL 102 (699)
Q Consensus 25 l~~~~~~L~d~~~~lg~~~--~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~ 102 (699)
..+.++-|.++...+..-. +...++++|||.+|+||||++|-++-.++ +++-...+....+..+.
T Consensus 144 q~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-------------evqpYaFTTksL~vGH~ 210 (620)
T KOG1490|consen 144 QKSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-------------EVQPYAFTTKLLLVGHL 210 (620)
T ss_pred hcchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-------------ccCCcccccchhhhhhh
Confidence 3444555666655665444 45678999999999999999988876543 11100011111111110
Q ss_pred cCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHh
Q 005389 103 HLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYI 182 (699)
Q Consensus 103 ~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi 182 (699)
. -....+.++|||||.+.+..+ ...+.-.....+
T Consensus 211 d-----------------------------------------ykYlrwQViDTPGILD~plEd-----rN~IEmqsITAL 244 (620)
T KOG1490|consen 211 D-----------------------------------------YKYLRWQVIDTPGILDRPEED-----RNIIEMQIITAL 244 (620)
T ss_pred h-----------------------------------------hheeeeeecCCccccCcchhh-----hhHHHHHHHHHH
Confidence 0 012368999999998776443 122233333344
Q ss_pred cCCCeeEEEEecCC--CcccchHHHHHHHhhCCC--CCcEEEeecccccCCCc
Q 005389 183 KQPSCLILAVTPAN--SDLANSDALQIAGIADPD--GYRTIGIITKLDIMDRG 231 (699)
Q Consensus 183 ~~~~~iIL~V~~a~--~d~~~~~~l~l~~~~dp~--g~rti~VlTK~D~~~~~ 231 (699)
.+-.+.+|++++-+ .+.+-.+-++|...+.|. .+++|+|+||+|.+.+.
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPE 297 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcc
Confidence 44456777776654 456656667888888875 68899999999999754
No 207
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.63 E-value=2.2e-07 Score=97.66 Aligned_cols=164 Identities=20% Similarity=0.285 Sum_probs=93.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCcccC--CccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 50 VAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~~~lP~~~--~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
|.+||-+||||||||++++..+ |.-. -.+|-.|. .+
T Consensus 162 VGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~Pn------------LG---------------------------- 199 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPN------------LG---------------------------- 199 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcC--CcccCCccccccCc------------cc----------------------------
Confidence 6789999999999999999875 3321 12333331 01
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcc---cchHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL---ANSDA 204 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~---~~~~~ 204 (699)
.+++ .....+++-|.||++..+..+- -+-.--+++|.++. +++.|++....- ..++.
T Consensus 200 -----------vV~~--~~~~sfv~ADIPGLIEGAs~G~------GLG~~FLrHIERt~-vL~hviD~s~~~~~dp~~~~ 259 (369)
T COG0536 200 -----------VVRV--DGGESFVVADIPGLIEGASEGV------GLGLRFLRHIERTR-VLLHVIDLSPIDGRDPIEDY 259 (369)
T ss_pred -----------EEEe--cCCCcEEEecCcccccccccCC------CccHHHHHHHHhhh-eeEEEEecCcccCCCHHHHH
Confidence 2222 1123589999999987754321 11122345677777 667776665322 12222
Q ss_pred HHHHHhhC---CC--CCcEEEeecccccCCCcccHHHHhcCCccccccCEEEEEcCChhhhhccccHHHHHHHHHHhcCC
Q 005389 205 LQIAGIAD---PD--GYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRS 279 (699)
Q Consensus 205 l~l~~~~d---p~--g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~~~~s~~~~~~~E~~fF~~ 279 (699)
..+..++. +. .++.++|+||+|+....+.... +.+.+... +.+
T Consensus 260 ~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~-----------------------------~~~~l~~~---~~~ 307 (369)
T COG0536 260 QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEE-----------------------------LKKALAEA---LGW 307 (369)
T ss_pred HHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHH-----------------------------HHHHHHHh---cCC
Confidence 23333333 22 6899999999997654333211 11222211 222
Q ss_pred CCcc-cCccccCCcchHHHHHHHHHHHHH
Q 005389 280 RPVY-NGLADRCGVPQLAKKLNQILVQHI 307 (699)
Q Consensus 280 ~~~~-~~~~~~~Gi~~L~~~L~~~L~~~i 307 (699)
.+.| -+...+.|+..|...+.+++.+..
T Consensus 308 ~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 308 EVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred CcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 2222 566788999999888888776654
No 208
>CHL00071 tufA elongation factor Tu
Probab=98.62 E-value=1.6e-07 Score=104.74 Aligned_cols=68 Identities=19% Similarity=0.173 Sum_probs=45.7
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCc-EEEeecccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKLD 226 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~r-ti~VlTK~D 226 (699)
..++||||||.. ..+..+ ..-+..+| ++++|+++......++ ...+..+...+.+ .|+|+||+|
T Consensus 75 ~~~~~iDtPGh~------------~~~~~~-~~~~~~~D-~~ilVvda~~g~~~qt-~~~~~~~~~~g~~~iIvvvNK~D 139 (409)
T CHL00071 75 RHYAHVDCPGHA------------DYVKNM-ITGAAQMD-GAILVVSAADGPMPQT-KEHILLAKQVGVPNIVVFLNKED 139 (409)
T ss_pred eEEEEEECCChH------------HHHHHH-HHHHHhCC-EEEEEEECCCCCcHHH-HHHHHHHHHcCCCEEEEEEEccC
Confidence 468999999942 244444 34466777 5556667776665544 4555555556777 678999999
Q ss_pred cCCC
Q 005389 227 IMDR 230 (699)
Q Consensus 227 ~~~~ 230 (699)
+.+.
T Consensus 140 ~~~~ 143 (409)
T CHL00071 140 QVDD 143 (409)
T ss_pred CCCH
Confidence 9864
No 209
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.62 E-value=2.5e-07 Score=91.50 Aligned_cols=115 Identities=16% Similarity=0.194 Sum_probs=70.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+|||+.++|||||++.+++..| +....+ |-.. .+.
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f-~~~~~p-T~~~------------~~~---------------------------- 43 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF-PENYVP-TVFE------------NYT---------------------------- 43 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCccCC-ceee------------eeE----------------------------
Confidence 3699999999999999999998876 222211 1000 000
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-ccc--hHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LAN--SDA 204 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~--~~~ 204 (699)
..+.+.+ ....+.||||+|- +..+.+...|+++++++||++.-.+.. +.+ ..+
T Consensus 44 ----------~~~~~~~-~~~~l~iwDtaG~-------------e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w 99 (182)
T cd04172 44 ----------ASFEIDT-QRIELSLWDTSGS-------------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 99 (182)
T ss_pred ----------EEEEECC-EEEEEEEEECCCc-------------hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 0111111 1236899999993 345566677999999666665433221 211 123
Q ss_pred HHHHHhhCCCCCcEEEeecccccCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
...++...+ ..++|+|.||.|+.+
T Consensus 100 ~~~i~~~~~-~~piilVgNK~DL~~ 123 (182)
T cd04172 100 KGEIQEFCP-NTKMLLVGCKSDLRT 123 (182)
T ss_pred HHHHHHHCC-CCCEEEEeEChhhhc
Confidence 334445444 589999999999854
No 210
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.61 E-value=2.9e-07 Score=106.69 Aligned_cols=129 Identities=20% Similarity=0.281 Sum_probs=75.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC-CCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRD-FLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~-~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..|+|+|..++|||||+++|+... .+.. .+.++ ....|..+..++
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~-~~~v~-------------------------~~~~D~~~~Ere-------- 47 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRA-NEAVA-------------------------ERVMDSNDLERE-------- 47 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcc-cccce-------------------------eecccCchHHHh--------
Confidence 469999999999999999998542 1111 01000 012233222211
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
.+++-..-...+.+.+ ..+.||||||.. .+...+..+++.+|++||+| ++..+...+. ..
T Consensus 48 ----rGiTI~~~~~~v~~~~-~kinlIDTPGh~-------------DF~~ev~~~l~~aD~alLVV-Da~~G~~~qT-~~ 107 (594)
T TIGR01394 48 ----RGITILAKNTAIRYNG-TKINIVDTPGHA-------------DFGGEVERVLGMVDGVLLLV-DASEGPMPQT-RF 107 (594)
T ss_pred ----CCccEEeeeEEEEECC-EEEEEEECCCHH-------------HHHHHHHHHHHhCCEEEEEE-eCCCCCcHHH-HH
Confidence 2333322233333332 479999999953 34455678889998665554 5655443332 33
Q ss_pred HHHhhCCCCCcEEEeecccccCCC
Q 005389 207 IAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 207 l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+++.+...+.+.|+|+||+|+.+.
T Consensus 108 ~l~~a~~~~ip~IVviNKiD~~~a 131 (594)
T TIGR01394 108 VLKKALELGLKPIVVINKIDRPSA 131 (594)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCc
Confidence 444444467899999999998643
No 211
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.60 E-value=4.1e-07 Score=104.03 Aligned_cols=138 Identities=16% Similarity=0.213 Sum_probs=77.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
....|+|+|..++|||||+++|+-.. |...+.. .+. ..+ .+ .....|+.++..+
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~------g~i~~~g-~v~--~~~----~~------~~~~~D~~~~E~~------- 62 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFG------GAIQEAG-TVK--GRK----SG------RHATSDWMEMEKQ------- 62 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC------CCccccc-eee--ccc----cC------ccccCCCcHHHHh-------
Confidence 45679999999999999999997421 0001111 000 000 00 0011233332211
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
.++|-..-.+.+.+.. ..+.||||||.. .+...+..+++..+++|++ +++..+...+ ..
T Consensus 63 -----rgiSi~~~~~~~~~~~-~~inliDTPG~~-------------df~~~~~~~l~~aD~aIlV-vDa~~gv~~~-t~ 121 (526)
T PRK00741 63 -----RGISVTSSVMQFPYRD-CLINLLDTPGHE-------------DFSEDTYRTLTAVDSALMV-IDAAKGVEPQ-TR 121 (526)
T ss_pred -----hCCceeeeeEEEEECC-EEEEEEECCCch-------------hhHHHHHHHHHHCCEEEEE-EecCCCCCHH-HH
Confidence 2333222223333322 469999999953 2334456778888855554 5565554333 24
Q ss_pred HHHHhhCCCCCcEEEeecccccCCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
++.+.+...+.|+++|+||+|+...
T Consensus 122 ~l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 122 KLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred HHHHHHHhcCCCEEEEEECCccccc
Confidence 5555566668999999999998754
No 212
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.60 E-value=2.4e-07 Score=93.11 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=43.9
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---HHHHHHHhhCCCCCcEEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~dp~g~rti~VlTK 224 (699)
..+.||||||- +.++.+...|+++++++|+++ +.....+-. .+...++... .+.++++|.||
T Consensus 44 ~~l~iwDt~G~-------------e~~~~l~~~~~~~ad~~ilV~-D~t~~~S~~~i~~w~~~i~~~~-~~~piilvgNK 108 (200)
T smart00176 44 IRFNVWDTAGQ-------------EKFGGLRDGYYIQGQCAIIMF-DVTARVTYKNVPNWHRDLVRVC-ENIPIVLCGNK 108 (200)
T ss_pred EEEEEEECCCc-------------hhhhhhhHHHhcCCCEEEEEE-ECCChHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 46899999993 356677788999998665554 444322211 2223333333 36899999999
Q ss_pred cccCC
Q 005389 225 LDIMD 229 (699)
Q Consensus 225 ~D~~~ 229 (699)
+|+..
T Consensus 109 ~Dl~~ 113 (200)
T smart00176 109 VDVKD 113 (200)
T ss_pred ccccc
Confidence 99853
No 213
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.59 E-value=1.3e-07 Score=98.14 Aligned_cols=122 Identities=21% Similarity=0.270 Sum_probs=71.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccc--CCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRG--NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~--~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
.+.|.+||-+|||||||||||+..+ |.- ...+|-+|..-
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG------------------------------------- 236 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIG------------------------------------- 236 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC--Ccccccceeeeccccc-------------------------------------
Confidence 4567899999999999999999875 321 11233333110
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc--ccch
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD--LANS 202 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d--~~~~ 202 (699)
.+...+...+++-|+|||+..+..+ . -.----++.|.+++ ++++|+|.+.. ....
T Consensus 237 ----------------~v~yddf~q~tVADiPGiI~GAh~n--k----GlG~~FLrHiER~~-~l~fVvD~s~~~~~~p~ 293 (366)
T KOG1489|consen 237 ----------------TVNYDDFSQITVADIPGIIEGAHMN--K----GLGYKFLRHIERCK-GLLFVVDLSGKQLRNPW 293 (366)
T ss_pred ----------------eeeccccceeEeccCcccccccccc--C----cccHHHHHHHHhhc-eEEEEEECCCcccCCHH
Confidence 0011112258999999999765322 1 11112345667777 77778877754 1111
Q ss_pred HHHH-HHHhhCC-----CCCcEEEeecccccCCC
Q 005389 203 DALQ-IAGIADP-----DGYRTIGIITKLDIMDR 230 (699)
Q Consensus 203 ~~l~-l~~~~dp-----~g~rti~VlTK~D~~~~ 230 (699)
+.++ |..++.- ..++.++|+||+|+.+.
T Consensus 294 ~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 294 QQLQLLIEELELYEKGLADRPALIVANKIDLPEA 327 (366)
T ss_pred HHHHHHHHHHHHHhhhhccCceEEEEeccCchhH
Confidence 2222 3333321 14679999999999743
No 214
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.58 E-value=1.6e-07 Score=95.70 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=46.3
Q ss_pred CCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-------ccchH
Q 005389 131 KGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-------LANSD 203 (699)
Q Consensus 131 ~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-------~~~~~ 203 (699)
.+++.+.....+... ...++||||||.. .+...+..++..++ ++++|+++... ...+
T Consensus 61 rg~T~d~~~~~~~~~-~~~i~liDtpG~~-------------~~~~~~~~~~~~~d-~~i~VvDa~~~~~~~~~~~~~~- 124 (219)
T cd01883 61 RGVTIDVGLAKFETE-KYRFTILDAPGHR-------------DFVPNMITGASQAD-VAVLVVDARKGEFEAGFEKGGQ- 124 (219)
T ss_pred CccCeecceEEEeeC-CeEEEEEECCChH-------------HHHHHHHHHhhhCC-EEEEEEECCCCccccccccccc-
Confidence 345555544444443 3579999999953 12223345667787 44555566542 2111
Q ss_pred HHHHHHhhCCCC-CcEEEeecccccCC
Q 005389 204 ALQIAGIADPDG-YRTIGIITKLDIMD 229 (699)
Q Consensus 204 ~l~l~~~~dp~g-~rti~VlTK~D~~~ 229 (699)
...........+ .++|+|+||+|+..
T Consensus 125 ~~~~~~~~~~~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 125 TREHALLARTLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred hHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 122222222233 67899999999984
No 215
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.58 E-value=3.1e-06 Score=90.87 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=28.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEE
Q 005389 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~ 86 (699)
|++||.+|+|||||+|+|++..+-......||..|..
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~ 37 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNV 37 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCcccccee
Confidence 5899999999999999999987533233347777754
No 216
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=6.5e-07 Score=82.85 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=76.3
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcc--cchHHHHHHHhhCCCCCcEEEeeccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL--ANSDALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~--~~~~~l~l~~~~dp~g~rti~VlTK~ 225 (699)
..|.++||.| ++..+.++..|++.+.++||+....|... +-+++...++.+.-...++|+|.|||
T Consensus 70 iklQiwDTag-------------qEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKC 136 (193)
T KOG0093|consen 70 IKLQIWDTAG-------------QERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKC 136 (193)
T ss_pred EEEEEEeccc-------------chhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEeccc
Confidence 3699999999 35688999999999999999976555332 22344445555655678999999999
Q ss_pred ccCCCcccHHHHhcCCccccccCEEEEEcCChhhhhccccHHHHHHHHHHhcCCCCcccCccccCCcchHHHHHHHHHHH
Q 005389 226 DIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQ 305 (699)
Q Consensus 226 D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~~~~s~~~~~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~ 305 (699)
|+-++..-.. +.+..+.+.+. -+||.+ +.+....++.+.++|-.++-+
T Consensus 137 Dmd~eRvis~-------------------------e~g~~l~~~LG--fefFEt-----SaK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 137 DMDSERVISH-------------------------ERGRQLADQLG--FEFFET-----SAKENINVKQVFERLVDIICD 184 (193)
T ss_pred CCccceeeeH-------------------------HHHHHHHHHhC--hHHhhh-----cccccccHHHHHHHHHHHHHH
Confidence 9976532110 11122333222 257765 455667787777777665554
Q ss_pred HHHhh
Q 005389 306 HIKAI 310 (699)
Q Consensus 306 ~i~~~ 310 (699)
.+.++
T Consensus 185 kmses 189 (193)
T KOG0093|consen 185 KMSES 189 (193)
T ss_pred Hhhhh
Confidence 44433
No 217
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.55 E-value=9.1e-07 Score=87.58 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
+|+|+|+.++|||||++.|++..+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~ 26 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF 26 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999986554
No 218
>PLN03127 Elongation factor Tu; Provisional
Probab=98.54 E-value=4.2e-07 Score=102.11 Aligned_cols=130 Identities=18% Similarity=0.227 Sum_probs=76.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
-..|+++|..++|||||+++|+|..- ..+.. +. ..|.. .|..+ +
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~-~~g~~----~~-----------~~~~~---------~D~~~--~--------- 104 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLA-EEGKA----KA-----------VAFDE---------IDKAP--E--------- 104 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHH-Hhhcc----cc-----------eeecc---------ccCCh--h---------
Confidence 34699999999999999999986420 01110 00 00000 00000 0
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
....+++-+.....+..++ ..++||||||.. ..+.+++.. +..+| ++++|++++.....++ .+
T Consensus 105 -E~~rGiTi~~~~~~~~~~~-~~i~~iDtPGh~------------~f~~~~~~g-~~~aD-~allVVda~~g~~~qt-~e 167 (447)
T PLN03127 105 -EKARGITIATAHVEYETAK-RHYAHVDCPGHA------------DYVKNMITG-AAQMD-GGILVVSAPDGPMPQT-KE 167 (447)
T ss_pred -HhhcCceeeeeEEEEcCCC-eEEEEEECCCcc------------chHHHHHHH-HhhCC-EEEEEEECCCCCchhH-HH
Confidence 0124455555555554433 478999999964 144555443 34577 6666677876655544 45
Q ss_pred HHHhhCCCCCc-EEEeecccccCC
Q 005389 207 IAGIADPDGYR-TIGIITKLDIMD 229 (699)
Q Consensus 207 l~~~~dp~g~r-ti~VlTK~D~~~ 229 (699)
.+..+...+.+ .|+|+||+|+++
T Consensus 168 ~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 168 HILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHHHcCCCeEEEEEEeeccCC
Confidence 55555556777 478999999985
No 219
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.54 E-value=1.8e-07 Score=104.86 Aligned_cols=80 Identities=23% Similarity=0.285 Sum_probs=46.4
Q ss_pred CccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCC--cccchH--HHHH
Q 005389 132 GVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS--DLANSD--ALQI 207 (699)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~--d~~~~~--~l~l 207 (699)
|++-+.....+...+ ..++||||||..+ .++.+ ...+..+| ++++|++++. ....+. .+.+
T Consensus 69 G~T~d~~~~~~~~~~-~~i~liDtpG~~~------------~~~~~-~~~~~~aD-~~ilVvDa~~~~~~~~~~~~~~~~ 133 (425)
T PRK12317 69 GVTIDLAHKKFETDK-YYFTIVDCPGHRD------------FVKNM-ITGASQAD-AAVLVVAADDAGGVMPQTREHVFL 133 (425)
T ss_pred CccceeeeEEEecCC-eEEEEEECCCccc------------chhhH-hhchhcCC-EEEEEEEcccCCCCCcchHHHHHH
Confidence 445455444444433 4799999999531 22222 23456787 5555666665 443332 2333
Q ss_pred HHhhCCCC-CcEEEeecccccCC
Q 005389 208 AGIADPDG-YRTIGIITKLDIMD 229 (699)
Q Consensus 208 ~~~~dp~g-~rti~VlTK~D~~~ 229 (699)
++. .+ .+.++|+||+|+.+
T Consensus 134 ~~~---~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 134 ART---LGINQLIVAINKMDAVN 153 (425)
T ss_pred HHH---cCCCeEEEEEEcccccc
Confidence 333 34 46899999999975
No 220
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.54 E-value=5.4e-08 Score=88.54 Aligned_cols=24 Identities=33% Similarity=0.747 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
+|+|+|..++||||||++|++..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 599999999999999999999875
No 221
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.53 E-value=2.3e-07 Score=83.77 Aligned_cols=103 Identities=25% Similarity=0.409 Sum_probs=68.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|++||..++||+||.++|-|.+.+++.+..+ +|.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQAv----------------e~~---------------------------- 37 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAV----------------EFN---------------------------- 37 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhccccee----------------ecc----------------------------
Confidence 479999999999999999999999887765421 111
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (699)
+=-.|||||-.-.. ..+-..+.-...+.+ +|..|..++...+.-.
T Consensus 38 ---------------------d~~~IDTPGEy~~~---------~~~Y~aL~tt~~dad-vi~~v~~and~~s~f~---- 82 (148)
T COG4917 38 ---------------------DKGDIDTPGEYFEH---------PRWYHALITTLQDAD-VIIYVHAANDPESRFP---- 82 (148)
T ss_pred ---------------------CccccCCchhhhhh---------hHHHHHHHHHhhccc-eeeeeecccCccccCC----
Confidence 11258999954221 122222333345565 7777777776544322
Q ss_pred HHhhCCCCCcEEEeecccccCC
Q 005389 208 AGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 208 ~~~~dp~g~rti~VlTK~D~~~ 229 (699)
....+...+++|+|+||.|+.+
T Consensus 83 p~f~~~~~k~vIgvVTK~DLae 104 (148)
T COG4917 83 PGFLDIGVKKVIGVVTKADLAE 104 (148)
T ss_pred cccccccccceEEEEecccccc
Confidence 2345555677999999999984
No 222
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=4.7e-07 Score=89.29 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=83.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHh
Q 005389 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (699)
Q Consensus 44 ~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (699)
+-.+-.|++||+.++|||++|-.+....|-+. ... .
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~-------~~s-----------T-------------------------- 44 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTS-------FIS-----------T-------------------------- 44 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCC-------ccc-----------e--------------------------
Confidence 34567899999999999999999988765211 000 0
Q ss_pred hhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCC-cc-cc
Q 005389 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS-DL-AN 201 (699)
Q Consensus 124 ~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~-d~-~~ 201 (699)
.|+......+.+.+. ...|.+|||.| ++.++.++..|++.+..++|++.-.+. .+ .-
T Consensus 45 -------iGIDFk~kti~l~g~-~i~lQiWDtaG-------------Qerf~ti~~sYyrgA~gi~LvyDitne~Sfeni 103 (207)
T KOG0078|consen 45 -------IGIDFKIKTIELDGK-KIKLQIWDTAG-------------QERFRTITTAYYRGAMGILLVYDITNEKSFENI 103 (207)
T ss_pred -------EEEEEEEEEEEeCCe-EEEEEEEEccc-------------chhHHHHHHHHHhhcCeeEEEEEccchHHHHHH
Confidence 111222223333332 23699999999 578999999999999978777644332 12 22
Q ss_pred hHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 202 SDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 202 ~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
..+++.+++..+.+.+.++|-||+|+.++
T Consensus 104 ~~W~~~I~e~a~~~v~~~LvGNK~D~~~~ 132 (207)
T KOG0078|consen 104 RNWIKNIDEHASDDVVKILVGNKCDLEEK 132 (207)
T ss_pred HHHHHHHHhhCCCCCcEEEeecccccccc
Confidence 23556667777778999999999999874
No 223
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.53 E-value=3.4e-07 Score=87.69 Aligned_cols=115 Identities=17% Similarity=0.266 Sum_probs=69.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+|||+.++|||||++.+.+..| +....++...-.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~~------------------------------------------- 36 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIPTIGIDS------------------------------------------- 36 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSETTSSEEE-------------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-cccccccccccc-------------------------------------------
Confidence 589999999999999999998875 322211110100
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCccc---chHHH
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA---NSDAL 205 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~---~~~~l 205 (699)
....+.+. .....+.|+|+||-. .+..+...++++.+++|++.. .+..-+ -..++
T Consensus 37 -------~~~~~~~~-~~~~~l~i~D~~g~~-------------~~~~~~~~~~~~~~~~ii~fd-~~~~~S~~~~~~~~ 94 (162)
T PF00071_consen 37 -------YSKEVSID-GKPVNLEIWDTSGQE-------------RFDSLRDIFYRNSDAIIIVFD-VTDEESFENLKKWL 94 (162)
T ss_dssp -------EEEEEEET-TEEEEEEEEEETTSG-------------GGHHHHHHHHTTESEEEEEEE-TTBHHHHHTHHHHH
T ss_pred -------cccccccc-ccccccccccccccc-------------ccccccccccccccccccccc-cccccccccccccc
Confidence 00011111 112369999999943 233444567888986666653 332211 12334
Q ss_pred HHHHhhCCCCCcEEEeecccccCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
..+....+...+.++|.||.|+.+
T Consensus 95 ~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 95 EEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HHHHHHSTTTSEEEEEEETTTGGG
T ss_pred ccccccccccccceeeeccccccc
Confidence 455566665689999999999886
No 224
>PRK10218 GTP-binding protein; Provisional
Probab=98.52 E-value=3.8e-07 Score=105.61 Aligned_cols=131 Identities=18% Similarity=0.241 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCC-CCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRD-FLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~-~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
++..|+|+|..++|||||+++|++.. .++... ... + ...|..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~-~~~---------------~----------~v~D~~~~E-------- 49 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRA-ETQ---------------E----------RVMDSNDLE-------- 49 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCccccc-ccc---------------e----------eeecccccc--------
Confidence 35679999999999999999999642 111100 000 0 011111110
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (699)
...+++-......+.+.+ ..+.||||||.. .+...+..|++.++++||+ +++..+...+.
T Consensus 50 ----~erGiTi~~~~~~i~~~~-~~inliDTPG~~-------------df~~~v~~~l~~aDg~ILV-VDa~~G~~~qt- 109 (607)
T PRK10218 50 ----KERGITILAKNTAIKWND-YRINIVDTPGHA-------------DFGGEVERVMSMVDSVLLV-VDAFDGPMPQT- 109 (607)
T ss_pred ----ccCceEEEEEEEEEecCC-EEEEEEECCCcc-------------hhHHHHHHHHHhCCEEEEE-EecccCccHHH-
Confidence 112333333333333332 479999999954 2334567788999866554 45555443333
Q ss_pred HHHHHhhCCCCCcEEEeecccccCCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
...++.+...+.+.|+|+||+|+...
T Consensus 110 ~~~l~~a~~~gip~IVviNKiD~~~a 135 (607)
T PRK10218 110 RFVTKKAFAYGLKPIVVINKVDRPGA 135 (607)
T ss_pred HHHHHHHHHcCCCEEEEEECcCCCCC
Confidence 23344444467899999999998643
No 225
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.51 E-value=6.2e-07 Score=105.42 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=42.0
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch--HHHHHHHhhCCCCCcEEEeeccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~~~~dp~g~rti~VlTK~ 225 (699)
..++||||||.. .....++. .+..+| ++++|+++......+ +.+.+++.+. ..+.|+|+||+
T Consensus 104 ~~~~liDtPG~~------------~f~~~~~~-~~~~aD-~~llVvda~~g~~~~t~e~~~~~~~~~--~~~iivvvNK~ 167 (632)
T PRK05506 104 RKFIVADTPGHE------------QYTRNMVT-GASTAD-LAIILVDARKGVLTQTRRHSFIASLLG--IRHVVLAVNKM 167 (632)
T ss_pred ceEEEEECCChH------------HHHHHHHH-HHHhCC-EEEEEEECCCCccccCHHHHHHHHHhC--CCeEEEEEEec
Confidence 478999999942 23344443 467777 556667776655433 3344444442 15688899999
Q ss_pred ccCC
Q 005389 226 DIMD 229 (699)
Q Consensus 226 D~~~ 229 (699)
|+.+
T Consensus 168 D~~~ 171 (632)
T PRK05506 168 DLVD 171 (632)
T ss_pred cccc
Confidence 9985
No 226
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.51 E-value=4.2e-07 Score=89.41 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=70.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+|+|+.++|||||+..++...| +....++. .. .+
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f-~~~~~~Ti-~~------------~~------------------------------ 38 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTV-FD------------NF------------------------------ 38 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCCCcc-ee------------ee------------------------------
Confidence 699999999999999999998776 22221111 00 00
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCC-cccc--hHHH
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS-DLAN--SDAL 205 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~-d~~~--~~~l 205 (699)
...+.+.+ ....+.|+||+|-. .++.+...|+++++++||+..-.+. .+.+ ..++
T Consensus 39 --------~~~~~~~~-~~v~l~i~Dt~G~~-------------~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~ 96 (176)
T cd04133 39 --------SANVSVDG-NTVNLGLWDTAGQE-------------DYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWV 96 (176)
T ss_pred --------EEEEEECC-EEEEEEEEECCCCc-------------cccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHH
Confidence 00112221 12479999999943 4445566799999877666543221 1222 1233
Q ss_pred HHHHhhCCCCCcEEEeecccccCCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
..++...+ ..++++|.||+|+.+.
T Consensus 97 ~~i~~~~~-~~piilvgnK~Dl~~~ 120 (176)
T cd04133 97 PELRHYAP-NVPIVLVGTKLDLRDD 120 (176)
T ss_pred HHHHHhCC-CCCEEEEEeChhhccC
Confidence 44444443 6899999999999753
No 227
>PRK12736 elongation factor Tu; Reviewed
Probab=98.51 E-value=6.5e-07 Score=99.29 Aligned_cols=129 Identities=19% Similarity=0.255 Sum_probs=71.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
-.|+++|..++|||||+++|+|..- ..+.+ ....|. ..|..+ ++.
T Consensus 13 ~ni~i~Ghvd~GKSTL~~~L~~~~~-~~g~~---------------~~~~~~---------~~d~~~--~E~-------- 57 (394)
T PRK12736 13 VNIGTIGHVDHGKTTLTAAITKVLA-ERGLN---------------QAKDYD---------SIDAAP--EEK-------- 57 (394)
T ss_pred eEEEEEccCCCcHHHHHHHHHhhhh-hhccc---------------cccchh---------hhcCCH--HHH--------
Confidence 3599999999999999999997521 00000 000000 001111 110
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (699)
..+++-+.....+.. ....++||||||.. +.+..++ .-+..+| ++++|+++......++ ...
T Consensus 58 --~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~------------~f~~~~~-~~~~~~d-~~llVvd~~~g~~~~t-~~~ 119 (394)
T PRK12736 58 --ERGITINTAHVEYET-EKRHYAHVDCPGHA------------DYVKNMI-TGAAQMD-GAILVVAATDGPMPQT-REH 119 (394)
T ss_pred --hcCccEEEEeeEecC-CCcEEEEEECCCHH------------HHHHHHH-HHHhhCC-EEEEEEECCCCCchhH-HHH
Confidence 123444443344333 23478999999932 2444443 3346677 5555667776554443 344
Q ss_pred HHhhCCCCCc-EEEeecccccCC
Q 005389 208 AGIADPDGYR-TIGIITKLDIMD 229 (699)
Q Consensus 208 ~~~~dp~g~r-ti~VlTK~D~~~ 229 (699)
+..+...+.+ .|+|+||+|+.+
T Consensus 120 ~~~~~~~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 120 ILLARQVGVPYLVVFLNKVDLVD 142 (394)
T ss_pred HHHHHHcCCCEEEEEEEecCCcc
Confidence 4445545677 578899999974
No 228
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.50 E-value=9.9e-07 Score=95.48 Aligned_cols=167 Identities=18% Similarity=0.183 Sum_probs=90.3
Q ss_pred HHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccc
Q 005389 30 NKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF 109 (699)
Q Consensus 30 ~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~ 109 (699)
|-.+|+..+.|-.- .|.|||+.++|||||||++++.-+||.-.+.--|.-.. + + .....+|+..
T Consensus 5 ~iykDIa~RT~G~I-----yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~--------D-E--Lpqs~~GktI 68 (492)
T TIGR02836 5 DIYKDIAERTQGDI-----YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQ--------D-E--LPQSAAGKTI 68 (492)
T ss_pred hHHHHHHHHhCCcE-----EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHH--------h-c--cCcCCCCCCc
Confidence 33455555565322 39999999999999999999997766544211000000 0 0 0000111110
Q ss_pred cChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCC-CCCchHH---------------HHH
Q 005389 110 YDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV-GEQPADI---------------EAR 173 (699)
Q Consensus 110 ~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~-~~q~~di---------------~~~ 173 (699)
+. -..+-+..+.+.+........++.|||++|+..... |....+- ++.
T Consensus 69 tT----------------TePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~A 132 (492)
T TIGR02836 69 MT----------------TEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEA 132 (492)
T ss_pred cc----------------CCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhh
Confidence 00 001122233344444432334799999999976532 2211110 111
Q ss_pred HHHHHHHHhc-CCCeeEEEEe-cCC------CcccchHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 174 IRTMIMSYIK-QPSCLILAVT-PAN------SDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 174 i~~lv~~yi~-~~~~iIL~V~-~a~------~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
..=-+++-|. +++ |-|+|+ ++. .++...+ .++..++...++|.++|+||.|-..+
T Consensus 133 AeiGT~kVI~dhst-IgivVtTDgsi~dI~Re~y~~aE-e~~i~eLk~~~kPfiivlN~~dp~~~ 195 (492)
T TIGR02836 133 AEIGTRKVIQEHST-IGVVVTTDGTITDIPREDYVEAE-ERVIEELKELNKPFIILLNSTHPYHP 195 (492)
T ss_pred hhhhHHHHHHhcCc-EEEEEEcCCCccccccccchHHH-HHHHHHHHhcCCCEEEEEECcCCCCc
Confidence 1112456677 555 666665 664 2333333 57788888889999999999995433
No 229
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.49 E-value=3.7e-07 Score=95.79 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=29.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEE
Q 005389 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~ 86 (699)
|++||.+|+|||||+|+|+|...-......||+-|..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~ 37 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV 37 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhcee
Confidence 5799999999999999999998633333557777644
No 230
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.49 E-value=4e-07 Score=101.34 Aligned_cols=83 Identities=16% Similarity=0.192 Sum_probs=50.4
Q ss_pred CCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH--HHHHH
Q 005389 131 KGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--ALQIA 208 (699)
Q Consensus 131 ~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--~l~l~ 208 (699)
.+++-+.....+..++ ..++||||||.. ..+.++. .-+..+| ++++|+++..+...+. .+.++
T Consensus 64 rgiTid~~~~~~~~~~-~~~~liDtPGh~------------~f~~~~~-~~~~~aD-~allVVda~~G~~~qt~~~~~~~ 128 (406)
T TIGR02034 64 QGITIDVAYRYFSTDK-RKFIVADTPGHE------------QYTRNMA-TGASTAD-LAVLLVDARKGVLEQTRRHSYIA 128 (406)
T ss_pred CCcCeEeeeEEEccCC-eEEEEEeCCCHH------------HHHHHHH-HHHhhCC-EEEEEEECCCCCccccHHHHHHH
Confidence 3455444444444433 479999999942 2444444 3466777 5555667776654433 34455
Q ss_pred HhhCCCCCcEEEeecccccCCC
Q 005389 209 GIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 209 ~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+.+. ..+.|+|+||+|+.+.
T Consensus 129 ~~~~--~~~iivviNK~D~~~~ 148 (406)
T TIGR02034 129 SLLG--IRHVVLAVNKMDLVDY 148 (406)
T ss_pred HHcC--CCcEEEEEEecccccc
Confidence 5543 2468889999999853
No 231
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.48 E-value=4e-07 Score=93.01 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=55.8
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeE--EEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLI--LAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iI--L~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D 226 (699)
.+++||+||+.....+. ...+.+.+++..|+.+...++ ++.+++...+..-| ...+..+...+.+..+|+||||
T Consensus 184 ~~~~vDlPG~~~a~y~~---~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D-~~~i~~~ge~~VP~t~vfTK~D 259 (320)
T KOG2486|consen 184 SWYEVDLPGYGRAGYGF---ELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTD-NPEIAWLGENNVPMTSVFTKCD 259 (320)
T ss_pred eEEEEecCCcccccCCc---cCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCC-hHHHHHHhhcCCCeEEeeehhh
Confidence 58999999976554432 222456678888887654343 33457777777766 5667788888999999999999
Q ss_pred cCCC
Q 005389 227 IMDR 230 (699)
Q Consensus 227 ~~~~ 230 (699)
.+..
T Consensus 260 K~k~ 263 (320)
T KOG2486|consen 260 KQKK 263 (320)
T ss_pred hhhh
Confidence 9854
No 232
>PLN03126 Elongation factor Tu; Provisional
Probab=98.47 E-value=9.7e-07 Score=99.79 Aligned_cols=131 Identities=17% Similarity=0.197 Sum_probs=73.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
.-.|+++|..++|||||+++|++..- .+..+.+ ..+ ...|.....+
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~-----~i~~~~~-----------~~~---------~~~D~~~~Er--------- 126 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALA-----SMGGSAP-----------KKY---------DEIDAAPEER--------- 126 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhh-----hhccccc-----------ccc---------ccccCChhHH---------
Confidence 34589999999999999999997531 0000000 000 0111111100
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
..+++-+.....+... ...++|||+||.. +.+.++ ..-+..+| +.++|+++......+. .+
T Consensus 127 ---~rGiTi~~~~~~~~~~-~~~i~liDtPGh~------------~f~~~~-~~g~~~aD-~ailVVda~~G~~~qt-~e 187 (478)
T PLN03126 127 ---ARGITINTATVEYETE-NRHYAHVDCPGHA------------DYVKNM-ITGAAQMD-GAILVVSGADGPMPQT-KE 187 (478)
T ss_pred ---hCCeeEEEEEEEEecC-CcEEEEEECCCHH------------HHHHHH-HHHHhhCC-EEEEEEECCCCCcHHH-HH
Confidence 1334433333333333 3478999999943 244444 34456777 4445666766654443 34
Q ss_pred HHHhhCCCCCc-EEEeecccccCCC
Q 005389 207 IAGIADPDGYR-TIGIITKLDIMDR 230 (699)
Q Consensus 207 l~~~~dp~g~r-ti~VlTK~D~~~~ 230 (699)
.+..+...+.+ .|+|+||+|+.+.
T Consensus 188 ~~~~~~~~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 188 HILLAKQVGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HHHHHHHcCCCeEEEEEecccccCH
Confidence 44445555676 7789999999863
No 233
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.47 E-value=1.2e-06 Score=100.21 Aligned_cols=137 Identities=12% Similarity=0.141 Sum_probs=75.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
....|+|+|..++|||||+++|+-.. |...+... +. ... . ......|+.+...+
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~------g~i~~~g~-v~--~~g----~------~~~t~~D~~~~E~~------- 63 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYG------GAIQTAGA-VK--GRG----S------QRHAKSDWMEMEKQ------- 63 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhC------CCccccce-ec--ccc----c------cccccCCCCHHHHh-------
Confidence 46789999999999999999996321 00011110 00 000 0 00012233322211
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
.++|-..-.+.+.+. ...+.||||||.. .+...+..++..++++|++ +++...+..+. .
T Consensus 64 -----rgisi~~~~~~~~~~-~~~inliDTPG~~-------------df~~~~~~~l~~aD~aIlV-vDa~~gv~~~t-~ 122 (527)
T TIGR00503 64 -----RGISITTSVMQFPYR-DCLVNLLDTPGHE-------------DFSEDTYRTLTAVDNCLMV-IDAAKGVETRT-R 122 (527)
T ss_pred -----cCCcEEEEEEEEeeC-CeEEEEEECCChh-------------hHHHHHHHHHHhCCEEEEE-EECCCCCCHHH-H
Confidence 233333323333332 2478999999963 2334456778889866555 45554443322 3
Q ss_pred HHHHhhCCCCCcEEEeecccccCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.+.+.+...+.++++|+||+|+..
T Consensus 123 ~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 123 KLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred HHHHHHHhcCCCEEEEEECccccC
Confidence 344444445789999999999864
No 234
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.47 E-value=9.6e-07 Score=100.05 Aligned_cols=143 Identities=17% Similarity=0.161 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceE-EEE----eeccCC-CcccceeecCCCccccChhHHHHH
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPL-VLQ----LLQTKT-DEEYGEFLHLPGKRFYDFSEIRRE 118 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~-~~~----l~~~~~-~~~~~~~~~~~g~~~~d~~~i~~~ 118 (699)
-...+|+|||..++|||||+++|+...- ..++.-+ .+. -.+++. .-.|+- ..|..+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g------~i~~~~~~~~~~~~~~~g~~~~~~~~a~--------~~D~~~eE-- 88 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTK------QIYEDQLASLHNDSKRHGTQGEKLDLAL--------LVDGLQAE-- 88 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcC------CCcHHHHHHHHHHHHhcCCCccccchhh--------hccCChHH--
Confidence 4567899999999999999999986631 1111000 000 000000 000000 11111110
Q ss_pred HHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc
Q 005389 119 IQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD 198 (699)
Q Consensus 119 i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d 198 (699)
...+++-+.....+..+ ...++||||||.. ...++++.. +..+| ++|+|+++...
T Consensus 89 ----------r~rgiTid~~~~~~~~~-~~~i~~iDTPGh~------------~f~~~~~~~-l~~aD-~allVVDa~~G 143 (474)
T PRK05124 89 ----------REQGITIDVAYRYFSTE-KRKFIIADTPGHE------------QYTRNMATG-ASTCD-LAILLIDARKG 143 (474)
T ss_pred ----------hhcCCCeEeeEEEeccC-CcEEEEEECCCcH------------HHHHHHHHH-HhhCC-EEEEEEECCCC
Confidence 11344444333333333 3479999999932 244455444 57777 56666777765
Q ss_pred ccch--HHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 199 LANS--DALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 199 ~~~~--~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
...+ +.+.++..+. -.+.|+|+||+|+.+.
T Consensus 144 ~~~qt~~~~~l~~~lg--~~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 144 VLDQTRRHSFIATLLG--IKHLVVAVNKMDLVDY 175 (474)
T ss_pred ccccchHHHHHHHHhC--CCceEEEEEeeccccc
Confidence 5433 2344555543 2468899999999853
No 235
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.47 E-value=9.6e-07 Score=90.39 Aligned_cols=65 Identities=20% Similarity=0.433 Sum_probs=42.4
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCc-EEEeecccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKLD 226 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~r-ti~VlTK~D 226 (699)
..++++||||.. ..+ ...+..++ ++++|+++......++ ..+...+...+.+ +|+|+||+|
T Consensus 83 ~~i~~vDtPg~~---------------~~~-l~~ak~aD-vVllviDa~~~~~~~~-~~i~~~l~~~g~p~vi~VvnK~D 144 (225)
T cd01882 83 RRLTFIECPNDI---------------NAM-IDIAKVAD-LVLLLIDASFGFEMET-FEFLNILQVHGFPRVMGVLTHLD 144 (225)
T ss_pred ceEEEEeCCchH---------------HHH-HHHHHhcC-EEEEEEecCcCCCHHH-HHHHHHHHHcCCCeEEEEEeccc
Confidence 468999999832 111 22345666 7777778876665544 4555555555666 456999999
Q ss_pred cCCC
Q 005389 227 IMDR 230 (699)
Q Consensus 227 ~~~~ 230 (699)
++.+
T Consensus 145 ~~~~ 148 (225)
T cd01882 145 LFKK 148 (225)
T ss_pred cCCc
Confidence 9854
No 236
>PTZ00258 GTP-binding protein; Provisional
Probab=98.47 E-value=6.7e-07 Score=97.98 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=33.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEE
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQ 88 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~ 88 (699)
..-.+|++||.+|+|||||+|+|++..........||+-|..-.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~ 62 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTAR 62 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEE
Confidence 45568999999999999999999998753333455777775443
No 237
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.46 E-value=1.4e-06 Score=97.10 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=40.0
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcc-cc--hHHHHHHHhhCCCCCcEEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL-AN--SDALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~-~~--~~~l~l~~~~dp~g~rti~VlTK 224 (699)
..++||||||.. ..+. ....++..+| .+++|+++.... .. .+.+.++..+. ..+.++|+||
T Consensus 80 ~~i~liDtPGh~------------~f~~-~~~~g~~~aD-~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK 143 (406)
T TIGR03680 80 RRVSFVDAPGHE------------TLMA-TMLSGAALMD-GALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNK 143 (406)
T ss_pred cEEEEEECCCHH------------HHHH-HHHHHHHHCC-EEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEc
Confidence 368999999932 2333 3455566777 455556666543 22 22233333322 2568999999
Q ss_pred cccCCC
Q 005389 225 LDIMDR 230 (699)
Q Consensus 225 ~D~~~~ 230 (699)
+|+.+.
T Consensus 144 ~Dl~~~ 149 (406)
T TIGR03680 144 IDLVSK 149 (406)
T ss_pred cccCCH
Confidence 999863
No 238
>PLN00023 GTP-binding protein; Provisional
Probab=98.45 E-value=1.2e-06 Score=93.27 Aligned_cols=29 Identities=31% Similarity=0.355 Sum_probs=25.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 44 TIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 44 ~~~lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
.....+|+|||..++|||||++.+++..|
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F 46 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSS 46 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCc
Confidence 34556899999999999999999998876
No 239
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.44 E-value=6.1e-07 Score=99.57 Aligned_cols=130 Identities=18% Similarity=0.213 Sum_probs=72.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
-.|+++|..++|||||+++|++.- ...+.+ +...+. ..|. ..++.
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~-~~~g~~---------------~~~~~~---------~~d~--~~~E~-------- 57 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVL-AKEGGA---------------AARAYD---------QIDN--APEEK-------- 57 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhH-HHhhcc---------------cccccc---------cccC--CHHHH--------
Confidence 359999999999999999998651 111110 000000 0010 01110
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (699)
..+++-+...+.+... ...++||||||.. ..+.++ ...+..+| .+++|+++......+. .+.
T Consensus 58 --~rG~Ti~~~~~~~~~~-~~~~~liDtpGh~------------~f~~~~-~~~~~~~D-~~ilVvda~~g~~~qt-~e~ 119 (394)
T TIGR00485 58 --ARGITINTAHVEYETE-NRHYAHVDCPGHA------------DYVKNM-ITGAAQMD-GAILVVSATDGPMPQT-REH 119 (394)
T ss_pred --hcCcceeeEEEEEcCC-CEEEEEEECCchH------------HHHHHH-HHHHhhCC-EEEEEEECCCCCcHHH-HHH
Confidence 1344444445555443 2468999999942 233343 33456677 4445666766544433 344
Q ss_pred HHhhCCCCCcEE-EeecccccCCC
Q 005389 208 AGIADPDGYRTI-GIITKLDIMDR 230 (699)
Q Consensus 208 ~~~~dp~g~rti-~VlTK~D~~~~ 230 (699)
+..+...+.+.+ +|+||+|+++.
T Consensus 120 l~~~~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 120 ILLARQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHcCCCEEEEEEEecccCCH
Confidence 444544567655 68999999863
No 240
>PRK13351 elongation factor G; Reviewed
Probab=98.44 E-value=1.1e-06 Score=104.25 Aligned_cols=134 Identities=14% Similarity=0.154 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
....|+|+|..++|||||+++|+...-.....+ .+ ..|....|+.....+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~-------~v----------------~~~~~~~d~~~~e~~------- 56 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMG-------EV----------------EDGTTVTDWMPQEQE------- 56 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccc-------cc----------------cCCcccCCCCHHHHh-------
Confidence 356799999999999999999985421000000 00 001112222221111
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
.+..+......+.. . ...+.||||||.. .+...+..+++..+++|| |+++......+. .
T Consensus 57 ---r~~ti~~~~~~~~~--~-~~~i~liDtPG~~-------------df~~~~~~~l~~aD~~il-Vvd~~~~~~~~~-~ 115 (687)
T PRK13351 57 ---RGITIESAATSCDW--D-NHRINLIDTPGHI-------------DFTGEVERSLRVLDGAVV-VFDAVTGVQPQT-E 115 (687)
T ss_pred ---cCCCcccceEEEEE--C-CEEEEEEECCCcH-------------HHHHHHHHHHHhCCEEEE-EEeCCCCCCHHH-H
Confidence 01122222233332 2 2479999999964 234556788898985555 556655443332 3
Q ss_pred HHHHhhCCCCCcEEEeecccccCCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+.+.+...+.+.++|+||+|+...
T Consensus 116 ~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 116 TVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHhcCCCEEEEEECCCCCCC
Confidence 4555566668899999999998854
No 241
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=2.2e-06 Score=85.68 Aligned_cols=81 Identities=20% Similarity=0.347 Sum_probs=54.6
Q ss_pred cceEEEeCCCCCCCCCCCCc-hHHHHHHHHHHHHHhcC--------------CCeeEEEEecCCCcccchHHHHHHHhhC
Q 005389 148 LDITLVDLPGITKVPVGEQP-ADIEARIRTMIMSYIKQ--------------PSCLILAVTPANSDLANSDALQIAGIAD 212 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~-~di~~~i~~lv~~yi~~--------------~~~iIL~V~~a~~d~~~~~~l~l~~~~d 212 (699)
..|+++||||+.+-=..+.. +-|...+.+.-.+|+++ -+|+++++-+....+..-| +.+.+.+.
T Consensus 104 lkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplD-ieflkrLt 182 (336)
T KOG1547|consen 104 LKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLD-IEFLKRLT 182 (336)
T ss_pred EEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCccc-HHHHHHHh
Confidence 47999999999654322221 34555666666666652 3678888888888777777 45555554
Q ss_pred CCCCcEEEeecccccCCC
Q 005389 213 PDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 213 p~g~rti~VlTK~D~~~~ 230 (699)
. -..++-|+-|.|.+.-
T Consensus 183 ~-vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 183 E-VVNVVPVIAKADTLTL 199 (336)
T ss_pred h-hheeeeeEeecccccH
Confidence 2 3678999999998853
No 242
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.43 E-value=7.6e-07 Score=85.73 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=35.6
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccC
Q 005389 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (699)
Q Consensus 22 ~~~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~ 77 (699)
+..+-.+++.|.+.++.. ....-..|+++|.+|+|||||+|+|.|...++++.
T Consensus 80 ~~~~~~L~~~l~~~~~~~---~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~ 132 (157)
T cd01858 80 PFGKGSLIQLLRQFSKLH---SDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAP 132 (157)
T ss_pred cccHHHHHHHHHHHHhhh---ccccceEEEEEeCCCCChHHHHHHHhcCCceeeCC
Confidence 344555666666544311 11122468899999999999999999987665554
No 243
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.43 E-value=1.1e-06 Score=95.32 Aligned_cols=38 Identities=32% Similarity=0.480 Sum_probs=30.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccC-CccccceEE
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLV 86 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~-~~~Tr~p~~ 86 (699)
.+|++||.+|+|||||+|+|+|... .++. ..||+-|..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~nypftTi~p~~ 41 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNV 41 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-eecccccccccceE
Confidence 5799999999999999999999874 3333 457777643
No 244
>PRK12735 elongation factor Tu; Reviewed
Probab=98.42 E-value=1.4e-06 Score=96.78 Aligned_cols=67 Identities=22% Similarity=0.206 Sum_probs=42.9
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEE-Eeecccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTI-GIITKLD 226 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti-~VlTK~D 226 (699)
..++||||||.. +.+..++ .-+..+| ++++|+++......+. .+.+..+...+.+.+ +|+||+|
T Consensus 75 ~~i~~iDtPGh~------------~f~~~~~-~~~~~aD-~~llVvda~~g~~~qt-~e~l~~~~~~gi~~iivvvNK~D 139 (396)
T PRK12735 75 RHYAHVDCPGHA------------DYVKNMI-TGAAQMD-GAILVVSAADGPMPQT-REHILLARQVGVPYIVVFLNKCD 139 (396)
T ss_pred cEEEEEECCCHH------------HHHHHHH-hhhccCC-EEEEEEECCCCCchhH-HHHHHHHHHcCCCeEEEEEEecC
Confidence 468999999952 2444443 4456777 5555666766554443 344455555567765 5799999
Q ss_pred cCC
Q 005389 227 IMD 229 (699)
Q Consensus 227 ~~~ 229 (699)
+.+
T Consensus 140 l~~ 142 (396)
T PRK12735 140 MVD 142 (396)
T ss_pred Ccc
Confidence 985
No 245
>PRK00049 elongation factor Tu; Reviewed
Probab=98.42 E-value=1.3e-06 Score=97.02 Aligned_cols=129 Identities=19% Similarity=0.233 Sum_probs=72.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
-.|+++|..++|||||+++|++.. ...+.+ ....+. ..|..+ ++.
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~-~~~g~~---------------~~~~~~---------~~d~~~--~E~-------- 57 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVL-AKKGGA---------------EAKAYD---------QIDKAP--EEK-------- 57 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhh-hhccCC---------------cccchh---------hccCCh--HHH--------
Confidence 358999999999999999999752 000000 000000 001000 110
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (699)
..+++-+.....+.. ....++||||||.. +.+..+. ..+..+| ++++|+++......++ ..+
T Consensus 58 --~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~------------~f~~~~~-~~~~~aD-~~llVVDa~~g~~~qt-~~~ 119 (396)
T PRK00049 58 --ARGITINTAHVEYET-EKRHYAHVDCPGHA------------DYVKNMI-TGAAQMD-GAILVVSAADGPMPQT-REH 119 (396)
T ss_pred --hcCeEEeeeEEEEcC-CCeEEEEEECCCHH------------HHHHHHH-hhhccCC-EEEEEEECCCCCchHH-HHH
Confidence 123333333333332 23468999999952 2444443 4467787 5555667766554443 344
Q ss_pred HHhhCCCCCcEE-EeecccccCC
Q 005389 208 AGIADPDGYRTI-GIITKLDIMD 229 (699)
Q Consensus 208 ~~~~dp~g~rti-~VlTK~D~~~ 229 (699)
+..+...+.+.+ +|+||+|+++
T Consensus 120 ~~~~~~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 120 ILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHHcCCCEEEEEEeecCCcc
Confidence 455555567865 6899999985
No 246
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.39 E-value=4.7e-07 Score=88.89 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=43.7
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHh-hC---CCCCcEEEeec
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGI-AD---PDGYRTIGIIT 223 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~-~d---p~g~rti~VlT 223 (699)
..++++|++|=. .++.+...|+.+.+++|++| |+...-.-.++...+.. +. -.+.|+++++|
T Consensus 58 ~~~~~~d~gG~~-------------~~~~~w~~y~~~~~~iIfVv-Dssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~N 123 (175)
T PF00025_consen 58 YSLTIWDLGGQE-------------SFRPLWKSYFQNADGIIFVV-DSSDPERLQEAKEELKELLNDPELKDIPILILAN 123 (175)
T ss_dssp EEEEEEEESSSG-------------GGGGGGGGGHTTESEEEEEE-ETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEE
T ss_pred EEEEEEeccccc-------------cccccceeeccccceeEEEE-ecccceeecccccchhhhcchhhcccceEEEEec
Confidence 368999999932 34566678999998555555 54432222333332222 22 23689999999
Q ss_pred ccccCCC
Q 005389 224 KLDIMDR 230 (699)
Q Consensus 224 K~D~~~~ 230 (699)
|.|+.+.
T Consensus 124 K~D~~~~ 130 (175)
T PF00025_consen 124 KQDLPDA 130 (175)
T ss_dssp STTSTTS
T ss_pred cccccCc
Confidence 9998754
No 247
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.37 E-value=5.3e-06 Score=80.00 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
+|+|+|+.++|||||+..+++..|
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f 25 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSY 25 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Confidence 699999999999999999887765
No 248
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.35 E-value=1.2e-05 Score=81.30 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=38.4
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---HHHHHhhCCCCCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l~l~~~~dp~g~rti~VlTK~ 225 (699)
.+.++||||-. .+..+...|+...+++|+ |.+.+...+-... +..+.... ...++++|.||+
T Consensus 59 ~i~~~Dt~g~~-------------~~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~ 123 (215)
T PTZ00132 59 CFNVWDTAGQE-------------KFGGLRDGYYIKGQCAII-MFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKV 123 (215)
T ss_pred EEEEEECCCch-------------hhhhhhHHHhccCCEEEE-EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECc
Confidence 68899999932 234455668888875555 4444432222221 11222222 347888999999
Q ss_pred ccCC
Q 005389 226 DIMD 229 (699)
Q Consensus 226 D~~~ 229 (699)
|+.+
T Consensus 124 Dl~~ 127 (215)
T PTZ00132 124 DVKD 127 (215)
T ss_pred cCcc
Confidence 9864
No 249
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.35 E-value=5.5e-07 Score=94.00 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=23.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
-|+++||.+|+|||||||+|+|.+-
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~s 88 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKS 88 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCc
Confidence 4799999999999999999999864
No 250
>PTZ00416 elongation factor 2; Provisional
Probab=98.35 E-value=1.9e-06 Score=104.07 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=47.2
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccC
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
.++|+||||..+ ...+ +...++..|++ ++|+++..++..+. ..+++.+...+.+.|+|+||+|+.
T Consensus 93 ~i~liDtPG~~~------------f~~~-~~~al~~~D~a-ilVvda~~g~~~~t-~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 93 LINLIDSPGHVD------------FSSE-VTAALRVTDGA-LVVVDCVEGVCVQT-ETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EEEEEcCCCHHh------------HHHH-HHHHHhcCCeE-EEEEECCCCcCccH-HHHHHHHHHcCCCEEEEEEChhhh
Confidence 589999999642 2222 45667788855 45666777666655 466777777788999999999997
No 251
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.34 E-value=2.9e-06 Score=102.56 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=46.5
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
..++||||||.. +.+.+ +...++.+|+.||+ ++|..+...+. ..+.+.+...+.++|+++||+|+
T Consensus 98 ~~inliDtPGh~------------dF~~e-~~~al~~~D~ailV-vda~~Gv~~~t-~~~~~~~~~~~~p~i~~iNK~D~ 162 (843)
T PLN00116 98 YLINLIDSPGHV------------DFSSE-VTAALRITDGALVV-VDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMDR 162 (843)
T ss_pred eEEEEECCCCHH------------HHHHH-HHHHHhhcCEEEEE-EECCCCCcccH-HHHHHHHHHCCCCEEEEEECCcc
Confidence 357999999953 23333 34556778855555 55666665544 45667777778999999999999
Q ss_pred C
Q 005389 228 M 228 (699)
Q Consensus 228 ~ 228 (699)
.
T Consensus 163 ~ 163 (843)
T PLN00116 163 C 163 (843)
T ss_pred c
Confidence 8
No 252
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.34 E-value=2.3e-06 Score=102.10 Aligned_cols=134 Identities=13% Similarity=0.185 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
....|+|+|..++|||||+++|+... |..++.. ..+....|+.+..++ .
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~------g~i~~~~-------------------~g~~~~~D~~~~E~~--r---- 67 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGA------GMISEEL-------------------AGEQLALDFDEEEQA--R---- 67 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCcchhh-------------------cCcceecCccHHHHH--h----
Confidence 56779999999999999999998542 1111100 001112333322211 0
Q ss_pred hcCCCCCccccceEEEEecC-CccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSP-HVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p-~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (699)
+..+....+.+..... ....++||||||..+ +...+...++..|++|+ |+++......+.
T Consensus 68 ----giTi~~~~~~~~~~~~~~~~~i~liDtPG~~d-------------f~~~~~~~l~~~D~avl-Vvda~~g~~~~t- 128 (731)
T PRK07560 68 ----GITIKAANVSMVHEYEGKEYLINLIDTPGHVD-------------FGGDVTRAMRAVDGAIV-VVDAVEGVMPQT- 128 (731)
T ss_pred ----hhhhhccceEEEEEecCCcEEEEEEcCCCccC-------------hHHHHHHHHHhcCEEEE-EEECCCCCCccH-
Confidence 0112222223322111 224689999999763 12345567788885555 556665554443
Q ss_pred HHHHHhhCCCCCcEEEeecccccCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
..+++.+...+.+.|+|+||+|+..
T Consensus 129 ~~~~~~~~~~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 129 ETVLRQALRERVKPVLFINKVDRLI 153 (731)
T ss_pred HHHHHHHHHcCCCeEEEEECchhhc
Confidence 3455554445678899999999863
No 253
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.32 E-value=6.7e-06 Score=79.54 Aligned_cols=128 Identities=17% Similarity=0.216 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
..-..|+|+|.+++||+|++.+++.... +.-....+.. .+. ++
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~-v~t~~~~~~~-------------s~k------~k----------------- 50 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPL-VITEADASSV-------------SGK------GK----------------- 50 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhcccc-ceeecccccc-------------ccc------cc-----------------
Confidence 4567899999999999999999998752 1111110000 000 00
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (699)
.+..+.-+.-.+++++. ..+.|+|||| +.+++-|..-+.+.+..+|++|.++. +... .+
T Consensus 51 ----r~tTva~D~g~~~~~~~--~~v~LfgtPG-------------q~RF~fm~~~l~~ga~gaivlVDss~-~~~~-~a 109 (187)
T COG2229 51 ----RPTTVAMDFGSIELDED--TGVHLFGTPG-------------QERFKFMWEILSRGAVGAIVLVDSSR-PITF-HA 109 (187)
T ss_pred ----cceeEeecccceEEcCc--ceEEEecCCC-------------cHHHHHHHHHHhCCcceEEEEEecCC-Ccch-HH
Confidence 00111111222333332 2589999999 45778888889999887777775443 2222 44
Q ss_pred HHHHHhhCCCC-CcEEEeecccccCCC
Q 005389 205 LQIAGIADPDG-YRTIGIITKLDIMDR 230 (699)
Q Consensus 205 l~l~~~~dp~g-~rti~VlTK~D~~~~ 230 (699)
..+...+.... .+.++.+||.|+-+.
T Consensus 110 ~~ii~f~~~~~~ip~vVa~NK~DL~~a 136 (187)
T COG2229 110 EEIIDFLTSRNPIPVVVAINKQDLFDA 136 (187)
T ss_pred HHHHHHHhhccCCCEEEEeeccccCCC
Confidence 55655555544 899999999999865
No 254
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.32 E-value=5.1e-06 Score=92.63 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-.|+|+|..++|||||+++|+|.
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCe
Confidence 45899999999999999999875
No 255
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.32 E-value=1.9e-06 Score=84.46 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=27.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~ 78 (699)
..+|+|+|.+|+|||||+|+|+|....+++..
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~ 148 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGAT 148 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCC
Confidence 46899999999999999999999876666543
No 256
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.31 E-value=2.6e-06 Score=95.51 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=46.2
Q ss_pred CccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc---ccch--HHHH
Q 005389 132 GVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD---LANS--DALQ 206 (699)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d---~~~~--~~l~ 206 (699)
+++-+.....+...+ ..++||||||.. ..+.. ...++..++.+|| |+++... ...+ +.+.
T Consensus 70 g~Tid~~~~~~~~~~-~~i~iiDtpGh~------------~f~~~-~~~~~~~aD~~il-VvDa~~~~~~~~~~t~~~~~ 134 (426)
T TIGR00483 70 GVTIDVAHWKFETDK-YEVTIVDCPGHR------------DFIKN-MITGASQADAAVL-VVAVGDGEFEVQPQTREHAF 134 (426)
T ss_pred CceEEEEEEEEccCC-eEEEEEECCCHH------------HHHHH-HHhhhhhCCEEEE-EEECCCCCcccCCchHHHHH
Confidence 444444444444443 479999999932 23333 3446678885555 4555543 2222 1123
Q ss_pred HHHhhCCCCCcEEEeecccccCC
Q 005389 207 IAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 207 l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
+++.+. ..++|+|+||+|+.+
T Consensus 135 ~~~~~~--~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 135 LARTLG--INQLIVAINKMDSVN 155 (426)
T ss_pred HHHHcC--CCeEEEEEEChhccC
Confidence 444432 257889999999975
No 257
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=5e-06 Score=80.26 Aligned_cols=120 Identities=20% Similarity=0.241 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
-+..++++|+.++|||+||-.++...|.|+-.- | +- -+++..
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~--T-----iG-------vefg~r------------------------ 46 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDL--T-----IG-------VEFGAR------------------------ 46 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccc--e-----ee-------eeecee------------------------
Confidence 355789999999999999999999998665441 1 10 011111
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCC--cccchH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS--DLANSD 203 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~--d~~~~~ 203 (699)
.+.|.... ..|.+|||.| ++.+++++.+|.+.+...||+..-.+. .-.-..
T Consensus 47 -------------~~~id~k~-IKlqiwDtaG-------------qe~frsv~~syYr~a~GalLVydit~r~sF~hL~~ 99 (216)
T KOG0098|consen 47 -------------MVTIDGKQ-IKLQIWDTAG-------------QESFRSVTRSYYRGAAGALLVYDITRRESFNHLTS 99 (216)
T ss_pred -------------EEEEcCce-EEEEEEecCC-------------cHHHHHHHHHHhccCcceEEEEEccchhhHHHHHH
Confidence 12222211 3689999999 468999999999998877777432222 122223
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
++.-+++......-++++-||+|+...
T Consensus 100 wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 100 WLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred HHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 344556655445677788899999764
No 258
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.31 E-value=3.4e-06 Score=100.50 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=45.3
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
..+.||||||..+- ...+..+++.+|++|++ +++......+. ..+.+.+...+.+.++|+||+|.
T Consensus 86 ~~i~liDTPG~~~f-------------~~~~~~al~~aD~~llV-vda~~g~~~~t-~~~~~~~~~~~~p~ivviNKiD~ 150 (720)
T TIGR00490 86 YLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVV-VCAVEGVMPQT-ETVLRQALKENVKPVLFINKVDR 150 (720)
T ss_pred eEEEEEeCCCcccc-------------HHHHHHHHHhcCEEEEE-EecCCCCCccH-HHHHHHHHHcCCCEEEEEEChhc
Confidence 47999999997632 23456788889855554 56655543333 44555554556788999999999
Q ss_pred CC
Q 005389 228 MD 229 (699)
Q Consensus 228 ~~ 229 (699)
..
T Consensus 151 ~~ 152 (720)
T TIGR00490 151 LI 152 (720)
T ss_pred cc
Confidence 74
No 259
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=2.9e-06 Score=91.00 Aligned_cols=84 Identities=19% Similarity=0.332 Sum_probs=57.4
Q ss_pred cceEEEeCCCCCCCCCCCCc-hHHHHHHHHHHHHHhc-------------CCCeeEEEEecCCCcccchHHHHHHHhhCC
Q 005389 148 LDITLVDLPGITKVPVGEQP-ADIEARIRTMIMSYIK-------------QPSCLILAVTPANSDLANSDALQIAGIADP 213 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~-~di~~~i~~lv~~yi~-------------~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp 213 (699)
.+||+|||||+.+.-..... .-+...+.+.-..|+. +.+|.++++.|-+..+..-| +.+.+.+..
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D-i~~Mk~l~~ 157 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD-IEFMKKLSK 157 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhh-HHHHHHHhc
Confidence 47999999999765222111 2233445555556664 34678888888888888877 455566553
Q ss_pred CCCcEEEeecccccCCCccc
Q 005389 214 DGYRTIGIITKLDIMDRGTD 233 (699)
Q Consensus 214 ~g~rti~VlTK~D~~~~~~~ 233 (699)
..++|-|+.|.|.+.+++.
T Consensus 158 -~vNiIPVI~KaD~lT~~El 176 (366)
T KOG2655|consen 158 -KVNLIPVIAKADTLTKDEL 176 (366)
T ss_pred -cccccceeeccccCCHHHH
Confidence 5889999999999987553
No 260
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.29 E-value=5.2e-06 Score=77.01 Aligned_cols=118 Identities=20% Similarity=0.207 Sum_probs=74.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
|...+++|++++|||||+-.+..-.| ..+...++
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtF-s~sYitTi--------------------------------------------- 41 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTF-SGSYITTI--------------------------------------------- 41 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhccc-ccceEEEe---------------------------------------------
Confidence 44567899999999999988876644 11111111
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEe--cCCCcccchHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVT--PANSDLANSDA 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~--~a~~d~~~~~~ 204 (699)
|+...+-.+.|.|.. ..|.|+||.| ++.++.++..|.+.++.+|++.. .+...-.-..+
T Consensus 42 -----GvDfkirTv~i~G~~-VkLqIwDtAG-------------qErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rW 102 (198)
T KOG0079|consen 42 -----GVDFKIRTVDINGDR-VKLQIWDTAG-------------QERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRW 102 (198)
T ss_pred -----eeeEEEEEeecCCcE-EEEEEeeccc-------------HHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHH
Confidence 112222344444433 3699999999 67999999999999997776632 22222222333
Q ss_pred HHHHHhhCCCCCcEEEeecccccCCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
++-++.-.+ ..+-+.|-||.|..+.
T Consensus 103 Leei~~ncd-sv~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 103 LEEIRNNCD-SVPKVLVGNKNDDPER 127 (198)
T ss_pred HHHHHhcCc-cccceecccCCCCccc
Confidence 443433333 4677899999998754
No 261
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.28 E-value=5.9e-06 Score=88.03 Aligned_cols=83 Identities=18% Similarity=0.278 Sum_probs=57.5
Q ss_pred cceEEEeCCCCCCCCCCCCc-hHHHHHHHHHHHHHhc--------------CCCeeEEEEecCCCcccchHHHHHHHhhC
Q 005389 148 LDITLVDLPGITKVPVGEQP-ADIEARIRTMIMSYIK--------------QPSCLILAVTPANSDLANSDALQIAGIAD 212 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~-~di~~~i~~lv~~yi~--------------~~~~iIL~V~~a~~d~~~~~~l~l~~~~d 212 (699)
.+|+++||||+.+.-..... .-+...+.+.-..|+. +.||.++++-|.+..+...| +.+.+.+.
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~D-Ie~Mk~ls 160 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLD-IEAMKRLS 160 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHH-HHHHHHHh
Confidence 47999999999765222211 3344455555566664 23677777888888888888 56667776
Q ss_pred CCCCcEEEeecccccCCCcc
Q 005389 213 PDGYRTIGIITKLDIMDRGT 232 (699)
Q Consensus 213 p~g~rti~VlTK~D~~~~~~ 232 (699)
. ....|=||.|.|.+...+
T Consensus 161 ~-~vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 161 K-RVNLIPVIAKADTLTDDE 179 (373)
T ss_pred c-ccCeeeeeeccccCCHHH
Confidence 4 478999999999997544
No 262
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.28 E-value=1.5e-06 Score=83.44 Aligned_cols=40 Identities=35% Similarity=0.337 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCC-ccccce
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRP 84 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~-~~Tr~p 84 (699)
...++|+++|.+|+|||||+|+|++...++++.+ .+|+.+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~ 138 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ 138 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce
Confidence 4568899999999999999999999876565554 345444
No 263
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.27 E-value=1.2e-06 Score=86.16 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
.|.|+++|..+||||+|+..|+...+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~ 28 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKT 28 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCc
Confidence 47899999999999999999987754
No 264
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.27 E-value=1.7e-06 Score=81.25 Aligned_cols=116 Identities=22% Similarity=0.242 Sum_probs=77.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
-...|.++|+.++||||||-.++...|-|-...
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~----------------------------------------------- 42 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPT----------------------------------------------- 42 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCc-----------------------------------------------
Confidence 356799999999999999999988766322110
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCC-CcccchHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN-SDLANSDA 204 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~-~d~~~~~~ 204 (699)
..|+...+-.+.|.+.. ..|.||||.| ++.+|.++-+|.+.+..+||+..-.. ..+.+-+
T Consensus 43 ----tIGvDFkvk~m~vdg~~-~KlaiWDTAG-------------qErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd- 103 (209)
T KOG0080|consen 43 ----TIGVDFKVKVMQVDGKR-LKLAIWDTAG-------------QERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLD- 103 (209)
T ss_pred ----eeeeeEEEEEEEEcCce-EEEEEEeccc-------------hHhhhccCHhHhccCceeEEEEEccchhhHHhHH-
Confidence 01222333344454443 4799999999 67999999999999998888753222 2233333
Q ss_pred HHHHHhhCCC----CCcEEEeecccccC
Q 005389 205 LQIAGIADPD----GYRTIGIITKLDIM 228 (699)
Q Consensus 205 l~l~~~~dp~----g~rti~VlTK~D~~ 228 (699)
..++++|-. ..-.+.|-||+|.-
T Consensus 104 -~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 104 -IWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred -HHHHHHHhhcCCccHhHhhhcccccch
Confidence 235566533 23456888999964
No 265
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=1.6e-06 Score=84.27 Aligned_cols=117 Identities=16% Similarity=0.214 Sum_probs=68.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
-.||++|+.|+|||||+..++-..|.+. ..+++.. .|+
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~e~-~e~TIGa----------------aF~------------------------- 43 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFHEN-IEPTIGA----------------AFL------------------------- 43 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCccccc-ccccccc----------------EEE-------------------------
Confidence 3699999999999999999988877332 1111111 111
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (699)
...+.+... ...+.+|||.|- ++...+.--|.++++++||+. +.+..-+=..+-..
T Consensus 44 ---------tktv~~~~~-~ikfeIWDTAGQ-------------ERy~slapMYyRgA~AAivvY-Dit~~~SF~~aK~W 99 (200)
T KOG0092|consen 44 ---------TKTVTVDDN-TIKFEIWDTAGQ-------------ERYHSLAPMYYRGANAAIVVY-DITDEESFEKAKNW 99 (200)
T ss_pred ---------EEEEEeCCc-EEEEEEEEcCCc-------------ccccccccceecCCcEEEEEE-ecccHHHHHHHHHH
Confidence 111111111 235889999993 456677778999999776663 32222111222223
Q ss_pred HHhhCCC---CCcEEEeecccccCCC
Q 005389 208 AGIADPD---GYRTIGIITKLDIMDR 230 (699)
Q Consensus 208 ~~~~dp~---g~rti~VlTK~D~~~~ 230 (699)
.+++... ..-+.+|-||+|+.+.
T Consensus 100 vkeL~~~~~~~~vialvGNK~DL~~~ 125 (200)
T KOG0092|consen 100 VKELQRQASPNIVIALVGNKADLLER 125 (200)
T ss_pred HHHHHhhCCCCeEEEEecchhhhhhc
Confidence 3333332 2334468899999873
No 266
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.24 E-value=3.2e-06 Score=83.99 Aligned_cols=44 Identities=32% Similarity=0.445 Sum_probs=33.4
Q ss_pred CCCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 21 ~~~~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
-+..+-++++.|.+.+. .-.++++||.+|+|||||+|+|++...
T Consensus 109 ~~~gi~eL~~~l~~~l~--------~~~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 109 KGWGVEELINAIKKLAK--------KGGDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CCCCHHHHHHHHHHHhh--------cCCcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 35556667777666542 235799999999999999999998754
No 267
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.22 E-value=5.9e-06 Score=91.36 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=31.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEE
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~ 86 (699)
.+|++||.+|+|||||+|+|++..+.......||+.|..
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 479999999999999999999987643344557877754
No 268
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.19 E-value=4.3e-06 Score=77.59 Aligned_cols=70 Identities=24% Similarity=0.355 Sum_probs=48.4
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCccc---chHHHHHHHhhCCCCCcEEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA---NSDALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~---~~~~l~l~~~~dp~g~rti~VlTK 224 (699)
..+.++|+|| +..++.|...|.+..++|+++|.+|..+-. .++.-.++..-.-.|.+.++.-||
T Consensus 65 vtiklwD~gG-------------q~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK 131 (186)
T KOG0075|consen 65 VTIKLWDLGG-------------QPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNK 131 (186)
T ss_pred eEEEEEecCC-------------CccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEeccc
Confidence 3578999999 347899999999999966666666654322 222222333323348899999999
Q ss_pred cccCCC
Q 005389 225 LDIMDR 230 (699)
Q Consensus 225 ~D~~~~ 230 (699)
.|+-+.
T Consensus 132 ~d~~~A 137 (186)
T KOG0075|consen 132 IDLPGA 137 (186)
T ss_pred ccCccc
Confidence 999754
No 269
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.18 E-value=3.3e-06 Score=79.82 Aligned_cols=25 Identities=40% Similarity=0.680 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~l 73 (699)
+++++|.+|+|||||+|+|+|..++
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~ 109 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV 109 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce
Confidence 8999999999999999999998754
No 270
>PRK12740 elongation factor G; Reviewed
Probab=98.17 E-value=7.8e-06 Score=96.93 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=46.5
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
..++||||||..+ +...+..++..+| ++++|+++..+...+. ..+.+.+...+.+.++|+||+|+
T Consensus 60 ~~i~liDtPG~~~-------------~~~~~~~~l~~aD-~vllvvd~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~D~ 124 (668)
T PRK12740 60 HKINLIDTPGHVD-------------FTGEVERALRVLD-GAVVVVCAVGGVEPQT-ETVWRQAEKYGVPRIIFVNKMDR 124 (668)
T ss_pred EEEEEEECCCcHH-------------HHHHHHHHHHHhC-eEEEEEeCCCCcCHHH-HHHHHHHHHcCCCEEEEEECCCC
Confidence 4799999999641 2334566788888 5555556665544333 45555565668899999999999
Q ss_pred CCC
Q 005389 228 MDR 230 (699)
Q Consensus 228 ~~~ 230 (699)
...
T Consensus 125 ~~~ 127 (668)
T PRK12740 125 AGA 127 (668)
T ss_pred CCC
Confidence 754
No 271
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.17 E-value=1.8e-05 Score=89.04 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=40.1
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-ccc--hHHHHHHHhhCCCCCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LAN--SDALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~--~~~l~l~~~~dp~g~rti~VlTK~ 225 (699)
.++|||+||. +..+++++ .-+...| .+++|++|... ... .+.+.++..+. -.+.|+|+||+
T Consensus 118 ~i~~IDtPGH------------~~fi~~m~-~g~~~~D-~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKi 181 (460)
T PTZ00327 118 HVSFVDCPGH------------DILMATML-NGAAVMD-AALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKI 181 (460)
T ss_pred eEeeeeCCCH------------HHHHHHHH-HHHhhCC-EEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecc
Confidence 5899999993 23455554 3355677 44556666653 222 23344444332 24689999999
Q ss_pred ccCCC
Q 005389 226 DIMDR 230 (699)
Q Consensus 226 D~~~~ 230 (699)
|+.+.
T Consensus 182 Dlv~~ 186 (460)
T PTZ00327 182 DLVKE 186 (460)
T ss_pred cccCH
Confidence 99853
No 272
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.15 E-value=8.6e-06 Score=81.50 Aligned_cols=66 Identities=18% Similarity=0.059 Sum_probs=39.3
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-ccch--HHHHHHHhhCCCCCcEEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LANS--DALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~~--~~l~l~~~~dp~g~rti~VlTK 224 (699)
..|.||||+|... .+...|+++++++||+..-.+.. +.+. .+...++...+ ..++|+|.||
T Consensus 66 v~l~iwDTaG~~~---------------~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK 129 (195)
T cd01873 66 VSLRLWDTFGDHD---------------KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCK 129 (195)
T ss_pred EEEEEEeCCCChh---------------hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEc
Confidence 4689999999531 12234888998666554432221 2211 12333333333 5789999999
Q ss_pred cccCC
Q 005389 225 LDIMD 229 (699)
Q Consensus 225 ~D~~~ 229 (699)
+|+.+
T Consensus 130 ~DL~~ 134 (195)
T cd01873 130 LDLRY 134 (195)
T ss_pred hhccc
Confidence 99865
No 273
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.14 E-value=1.4e-05 Score=81.68 Aligned_cols=37 Identities=35% Similarity=0.392 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC-CCCcccCC--ccccc
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGR-DFLPRGND--ICTRR 83 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~-~~lP~~~~--~~Tr~ 83 (699)
.-.|+|+|.+++|||+|||.|+|. +.++.+.+ .||+-
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~g 46 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKG 46 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccc
Confidence 446899999999999999999999 23466655 56654
No 274
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.06 E-value=1.5e-05 Score=84.27 Aligned_cols=56 Identities=20% Similarity=0.367 Sum_probs=37.0
Q ss_pred CCchHHHHHHHHHHHHHhCCC-----CCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccC
Q 005389 22 GGSVIPLVNKLQDIFAQLGSQ-----STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (699)
Q Consensus 22 ~~~l~~~~~~L~d~~~~lg~~-----~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~ 77 (699)
+..+-.+++.+.+.+...... ..-...+|+|||.+|+|||||+|+|+|.....++.
T Consensus 88 ~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~ 148 (276)
T TIGR03596 88 GKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN 148 (276)
T ss_pred cccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCC
Confidence 344566666666654321100 01234579999999999999999999987655544
No 275
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.06 E-value=2e-05 Score=82.29 Aligned_cols=128 Identities=23% Similarity=0.292 Sum_probs=85.5
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHH
Q 005389 43 STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (699)
Q Consensus 43 ~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (699)
...+.|.|+|||.+||||||||++|++..+.|.+.-..|--|+.- ..++|
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h-------------~a~Lp----------------- 223 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLH-------------SAHLP----------------- 223 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhh-------------hccCC-----------------
Confidence 457899999999999999999999999998888765444332100 00111
Q ss_pred hhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch
Q 005389 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (699)
Q Consensus 123 t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (699)
....+.+.||=|+.+. -|..+.+.++.. +..+.+++ +||-|++.+...+..
T Consensus 224 -----------------------sg~~vlltDTvGFisd----LP~~LvaAF~AT-LeeVaead-lllHvvDiShP~ae~ 274 (410)
T KOG0410|consen 224 -----------------------SGNFVLLTDTVGFISD----LPIQLVAAFQAT-LEEVAEAD-LLLHVVDISHPNAEE 274 (410)
T ss_pred -----------------------CCcEEEEeechhhhhh----CcHHHHHHHHHH-HHHHhhcc-eEEEEeecCCccHHH
Confidence 1224789999999753 356666666554 45567776 888888877665543
Q ss_pred H---HHHHHHhhCCC----CCcEEEeecccccCC
Q 005389 203 D---ALQIAGIADPD----GYRTIGIITKLDIMD 229 (699)
Q Consensus 203 ~---~l~l~~~~dp~----g~rti~VlTK~D~~~ 229 (699)
. .+...+.++-. ..+.|-|=||+|...
T Consensus 275 q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 275 QRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHHHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 3 24455555432 356677778887754
No 276
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.04 E-value=1.8e-05 Score=89.16 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+++|..++|||||+++|+..
T Consensus 9 nv~i~Ghvd~GKSTL~~~Ll~~ 30 (446)
T PTZ00141 9 NLVVIGHVDSGKSTTTGHLIYK 30 (446)
T ss_pred EEEEEecCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 277
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.03 E-value=2.2e-05 Score=88.38 Aligned_cols=83 Identities=19% Similarity=0.270 Sum_probs=45.9
Q ss_pred CccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-cc-----chHHH
Q 005389 132 GVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LA-----NSDAL 205 (699)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~-----~~~~l 205 (699)
+++-+.-....... ...++|+||||.. +.+.+ +..++..+|+.||+| ++..+ +. .....
T Consensus 70 GiTi~~~~~~~~~~-~~~i~liDtPGh~------------df~~~-~~~g~~~aD~aIlVV-da~~G~~e~g~~~~~qT~ 134 (447)
T PLN00043 70 GITIDIALWKFETT-KYYCTVIDAPGHR------------DFIKN-MITGTSQADCAVLII-DSTTGGFEAGISKDGQTR 134 (447)
T ss_pred CceEEEEEEEecCC-CEEEEEEECCCHH------------HHHHH-HHhhhhhccEEEEEE-EcccCceecccCCCchHH
Confidence 44433333333333 3479999999932 24444 456678888676655 45443 21 01112
Q ss_pred HHHHhhCCCCC-cEEEeecccccCC
Q 005389 206 QIAGIADPDGY-RTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~~~dp~g~-rti~VlTK~D~~~ 229 (699)
+.+..+...|. +.|+|+||+|+.+
T Consensus 135 eh~~~~~~~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 135 EHALLAFTLGVKQMICCCNKMDATT 159 (447)
T ss_pred HHHHHHHHcCCCcEEEEEEcccCCc
Confidence 23333333456 5688999999873
No 278
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=1.6e-05 Score=78.51 Aligned_cols=119 Identities=13% Similarity=0.201 Sum_probs=76.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
-+..||++|+.++|||-||..++.-+|-+-+ +-.+-+.+.
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~S-----ksTIGvef~----------------------------------- 52 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLES-----KSTIGVEFA----------------------------------- 52 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCccc-----ccceeEEEE-----------------------------------
Confidence 4678999999999999999999888773222 111111110
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCC-Ccc-cchH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN-SDL-ANSD 203 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~-~d~-~~~~ 203 (699)
...+.|.+. .....||||.| +++.+.++..|.+.+...+|+..-.. ..+ .-..
T Consensus 53 -----------t~t~~vd~k-~vkaqIWDTAG-------------QERyrAitSaYYrgAvGAllVYDITr~~Tfenv~r 107 (222)
T KOG0087|consen 53 -----------TRTVNVDGK-TVKAQIWDTAG-------------QERYRAITSAYYRGAVGALLVYDITRRQTFENVER 107 (222)
T ss_pred -----------eeceeecCc-EEEEeeecccc-------------hhhhccccchhhcccceeEEEEechhHHHHHHHHH
Confidence 011222222 13688999999 57888999999999987776642211 111 1122
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
+++-++........+++|-||+|+..
T Consensus 108 WL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 108 WLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred HHHHHHhcCCCCeEEEEeecchhhhh
Confidence 34444444445688999999999976
No 279
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.02 E-value=1.1e-05 Score=85.75 Aligned_cols=56 Identities=18% Similarity=0.369 Sum_probs=36.3
Q ss_pred CCchHHHHHHHHHHHHHhCC-----CCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccC
Q 005389 22 GGSVIPLVNKLQDIFAQLGS-----QSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (699)
Q Consensus 22 ~~~l~~~~~~L~d~~~~lg~-----~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~ 77 (699)
+..+-.+++.+...+..... ...-...+|+|||.+|+|||||+|+|+|...+.++.
T Consensus 91 ~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~ 151 (287)
T PRK09563 91 GQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN 151 (287)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCC
Confidence 34455556655555432210 001234579999999999999999999987655544
No 280
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.01 E-value=3.6e-05 Score=72.98 Aligned_cols=111 Identities=19% Similarity=0.252 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
--||.++|--||||||+++.|.|.+ .+.-.+|..- ++.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~---~~~i~pt~gf---~Ik------------------------------------ 53 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGED---TDTISPTLGF---QIK------------------------------------ 53 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCC---ccccCCccce---eeE------------------------------------
Confidence 4579999999999999999999986 2221122111 000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
.+++. ...|+++|.-| +..+++...+|....+++|.+|.. .....-++...
T Consensus 54 ------------tl~~~---~~~L~iwDvGG-------------q~~lr~~W~nYfestdglIwvvDs-sD~~r~~e~~~ 104 (185)
T KOG0073|consen 54 ------------TLEYK---GYTLNIWDVGG-------------QKTLRSYWKNYFESTDGLIWVVDS-SDRMRMQECKQ 104 (185)
T ss_pred ------------EEEec---ceEEEEEEcCC-------------cchhHHHHHHhhhccCeEEEEEEC-chHHHHHHHHH
Confidence 11111 13699999988 346788889999999966666654 43333344433
Q ss_pred HHHhh----CCCCCcEEEeecccccC
Q 005389 207 IAGIA----DPDGYRTIGIITKLDIM 228 (699)
Q Consensus 207 l~~~~----dp~g~rti~VlTK~D~~ 228 (699)
.++.+ .-.|.+.+++.||.|+-
T Consensus 105 ~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 105 ELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred HHHHHHhhhhhcCCceEEEEecCcCc
Confidence 33322 22378999999999997
No 281
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=5.4e-05 Score=83.88 Aligned_cols=119 Identities=22% Similarity=0.311 Sum_probs=78.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
..|-|.|+|.---||+|||.+|-+..+.....|.-|.-. |
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhI--------------G-------------------------- 191 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHI--------------G-------------------------- 191 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCcccee--------------c--------------------------
Confidence 468899999999999999999988776444443222111 1
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
-..+.-|....+||.|||| ...+..|-.+-..-.| |+++|+.|....-.+. +
T Consensus 192 -------------AF~V~~p~G~~iTFLDTPG-------------HaAF~aMRaRGA~vtD-IvVLVVAadDGVmpQT-~ 243 (683)
T KOG1145|consen 192 -------------AFTVTLPSGKSITFLDTPG-------------HAAFSAMRARGANVTD-IVVLVVAADDGVMPQT-L 243 (683)
T ss_pred -------------eEEEecCCCCEEEEecCCc-------------HHHHHHHHhccCcccc-EEEEEEEccCCccHhH-H
Confidence 1122223335799999999 3456666545444455 8888888887765554 3
Q ss_pred HHHHhhCCCCCcEEEeecccccCCCcccH
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMDRGTDA 234 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~~~~~~ 234 (699)
+-++.....+.++|+.+||+|.- +.+.
T Consensus 244 EaIkhAk~A~VpiVvAinKiDkp--~a~p 270 (683)
T KOG1145|consen 244 EAIKHAKSANVPIVVAINKIDKP--GANP 270 (683)
T ss_pred HHHHHHHhcCCCEEEEEeccCCC--CCCH
Confidence 34444444568999999999964 5444
No 282
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.00 E-value=0.00036 Score=75.31 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
...|.|.|.+|||||||+++|...
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998654
No 283
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=2.7e-05 Score=72.61 Aligned_cols=119 Identities=22% Similarity=0.302 Sum_probs=77.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
|..++|+|+.++|||.||..++...|- -++.. | + .-+++
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfk-DdssH-T---i---------GveFg--------------------------- 47 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFK-DDSSH-T---I---------GVEFG--------------------------- 47 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhc-ccccc-e---e---------eeeec---------------------------
Confidence 667999999999999999999887651 11110 0 0 00111
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc--ccchHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD--LANSDA 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d--~~~~~~ 204 (699)
...|. +-+ ....|.+|||.| ++.++..++.|.+.+...+|+..-.+.| -+-..+
T Consensus 48 --------SrIin--VGg-K~vKLQIWDTAG-------------QErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnW 103 (214)
T KOG0086|consen 48 --------SRIVN--VGG-KTVKLQIWDTAG-------------QERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNW 103 (214)
T ss_pred --------ceeee--ecC-cEEEEEEeeccc-------------HHHHHHHHHHHhccccceEEEEeccchhhHHHHHHH
Confidence 01111 111 123699999999 6799999999999887677664433333 223345
Q ss_pred HHHHHhhCCCCCcEEEeecccccCCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+.-++.+.+...-+|.+-||.|+-..
T Consensus 104 L~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 104 LTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred HHHHHhhCCCcEEEEEeCChhhcChh
Confidence 66677777766777777899998643
No 284
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=97.99 E-value=5.2e-05 Score=71.67 Aligned_cols=69 Identities=20% Similarity=0.300 Sum_probs=43.5
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc--ccchHHHHHHH-hhC-CCCCcEEEeec
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD--LANSDALQIAG-IAD-PDGYRTIGIIT 223 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d--~~~~~~l~l~~-~~d-p~g~rti~VlT 223 (699)
..|.||||.| ++.++.++.+|.++.-.++|+..-.|.. ..-.++++-|+ .+. |...-...|-+
T Consensus 58 iklqlwdtag-------------qerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGh 124 (213)
T KOG0091|consen 58 IKLQLWDTAG-------------QERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGH 124 (213)
T ss_pred EEEEEeeccc-------------hHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEecc
Confidence 3699999999 6799999999999987555554322211 11122232232 233 44444557789
Q ss_pred ccccCC
Q 005389 224 KLDIMD 229 (699)
Q Consensus 224 K~D~~~ 229 (699)
|+|+..
T Consensus 125 KsDL~S 130 (213)
T KOG0091|consen 125 KSDLQS 130 (213)
T ss_pred ccchhh
Confidence 999974
No 285
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=97.98 E-value=1.6e-05 Score=76.75 Aligned_cols=119 Identities=17% Similarity=0.352 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
.|-.|+++|+.|+|||||+|.++..+|.-- . .......|+
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~q-y----------------kaTIgadFl----------------------- 47 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQ-Y----------------KATIGADFL----------------------- 47 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHH-h----------------ccccchhhe-----------------------
Confidence 466899999999999999999998876100 0 000111111
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEE-ecCCCcccchHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAV-TPANSDLANSDA 204 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V-~~a~~d~~~~~~ 204 (699)
.-.+.|. .....|.+|||.| ++.++.+-..+.+.+||.+|+. ++....+.+-+.
T Consensus 48 -----------tKev~Vd-~~~vtlQiWDTAG-------------QERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~ 102 (210)
T KOG0394|consen 48 -----------TKEVQVD-DRSVTLQIWDTAG-------------QERFQSLGVAFYRGADCCVLVYDVNNPKSFENLEN 102 (210)
T ss_pred -----------eeEEEEc-CeEEEEEEEeccc-------------HHHhhhcccceecCCceEEEEeecCChhhhccHHH
Confidence 1122333 2234799999999 6788888888999999887773 222233333332
Q ss_pred H--HHHHhhC---CCCCcEEEeecccccCC
Q 005389 205 L--QIAGIAD---PDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 l--~l~~~~d---p~g~rti~VlTK~D~~~ 229 (699)
+ +++.+.+ |..=|.|++-||+|+-+
T Consensus 103 Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 103 WRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred HHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 2 4555555 44568999999999965
No 286
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.95 E-value=4.4e-05 Score=74.62 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=34.8
Q ss_pred CCchHHHHHHHHHHHHHhC----CCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcc
Q 005389 22 GGSVIPLVNKLQDIFAQLG----SQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (699)
Q Consensus 22 ~~~l~~~~~~L~d~~~~lg----~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~ 75 (699)
+..+-.+.+.|...+.... ....-..+.|+++|.+|+|||||+|+|++..+..+
T Consensus 86 ~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~ 143 (171)
T cd01856 86 GKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKV 143 (171)
T ss_pred cccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceee
Confidence 3455556666655431100 00112346899999999999999999999876443
No 287
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.95 E-value=2.5e-05 Score=81.00 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLP 74 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP 74 (699)
..++++|.+|+|||||||+|+|...+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~ 147 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQ 147 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhcc
Confidence 479999999999999999999986443
No 288
>PRK12288 GTPase RsgA; Reviewed
Probab=97.94 E-value=2e-05 Score=85.63 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcc
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~ 75 (699)
.++++|.+|+|||||||+|+|...+.+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t 233 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILV 233 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceee
Confidence 489999999999999999999865433
No 289
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.92 E-value=5.3e-05 Score=72.55 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=44.6
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH-HHHHHhhCC--CCCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-LQIAGIADP--DGYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-l~l~~~~dp--~g~rti~VlTK~ 225 (699)
.+.+|||.| ++.+..++..|.+.+.+-+|+.+.. |-..-++ +.+-+.+.. ...|+++|-||+
T Consensus 70 r~mlWdtag-------------qeEfDaItkAyyrgaqa~vLVFSTT--Dr~SFea~~~w~~kv~~e~~~IPtV~vqNKI 134 (246)
T KOG4252|consen 70 RSMLWDTAG-------------QEEFDAITKAYYRGAQASVLVFSTT--DRYSFEATLEWYNKVQKETERIPTVFVQNKI 134 (246)
T ss_pred HHHHHHhcc-------------chhHHHHHHHHhccccceEEEEecc--cHHHHHHHHHHHHHHHHHhccCCeEEeeccc
Confidence 467899999 4567788889999888776665432 2211121 223333332 368999999999
Q ss_pred ccCCC
Q 005389 226 DIMDR 230 (699)
Q Consensus 226 D~~~~ 230 (699)
|+++.
T Consensus 135 Dlved 139 (246)
T KOG4252|consen 135 DLVED 139 (246)
T ss_pred hhhHh
Confidence 99965
No 290
>PRK12289 GTPase RsgA; Reviewed
Probab=97.91 E-value=2.2e-05 Score=85.38 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccc
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~ 76 (699)
.++|+|.+|+|||||||+|+|...+.++
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~ 201 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVG 201 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccc
Confidence 4899999999999999999988654444
No 291
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.91 E-value=4.9e-06 Score=80.17 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=22.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~ 75 (699)
..++++|..|+|||||||+|++...+.+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t 63 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKT 63 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhh
Confidence 5799999999999999999999864433
No 292
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=7.1e-05 Score=83.43 Aligned_cols=116 Identities=18% Similarity=0.268 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
...|-|+|+|.---||||||-.|-+..+-+...|--|...-
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIG--------------------------------------- 43 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIG--------------------------------------- 43 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEee---------------------------------------
Confidence 46799999999999999999999888775555553332110
Q ss_pred hhcCCCCCccccceEEEEecC--CccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch
Q 005389 125 KEAGGNKGVSDKQIRLKIFSP--HVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p--~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (699)
..++..+ ..+.++|+|||| .+.+..|=.+=..-+| |.++|++++..+-.|
T Consensus 44 --------------A~~v~~~~~~~~~itFiDTPG-------------HeAFt~mRaRGa~vtD-IaILVVa~dDGv~pQ 95 (509)
T COG0532 44 --------------AYQVPLDVIKIPGITFIDTPG-------------HEAFTAMRARGASVTD-IAILVVAADDGVMPQ 95 (509)
T ss_pred --------------eEEEEeccCCCceEEEEcCCc-------------HHHHHHHHhcCCcccc-EEEEEEEccCCcchh
Confidence 1111111 235799999999 3466666444444555 666667777766554
Q ss_pred --HHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 203 --DALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 203 --~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
++...++. .+.|+++.+||+|+.+.
T Consensus 96 TiEAI~hak~---a~vP~iVAiNKiDk~~~ 122 (509)
T COG0532 96 TIEAINHAKA---AGVPIVVAINKIDKPEA 122 (509)
T ss_pred HHHHHHHHHH---CCCCEEEEEecccCCCC
Confidence 44445554 46999999999999854
No 293
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.87 E-value=0.00018 Score=79.83 Aligned_cols=79 Identities=25% Similarity=0.172 Sum_probs=47.7
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
.+++||||||..... ..+-..+..+. ...+++ .+++|++|... +++...++.+......+-+|+||+|.
T Consensus 183 ~DvViIDTaGr~~~d-----~~lm~El~~i~--~~~~p~-e~lLVlda~~G---q~a~~~a~~F~~~~~~~g~IlTKlD~ 251 (429)
T TIGR01425 183 FDIIIVDTSGRHKQE-----DSLFEEMLQVA--EAIQPD-NIIFVMDGSIG---QAAEAQAKAFKDSVDVGSVIITKLDG 251 (429)
T ss_pred CCEEEEECCCCCcch-----HHHHHHHHHHh--hhcCCc-EEEEEeccccC---hhHHHHHHHHHhccCCcEEEEECccC
Confidence 379999999965321 12222333322 223565 56666776543 34456666665545678899999999
Q ss_pred CCCcccHHHH
Q 005389 228 MDRGTDARNL 237 (699)
Q Consensus 228 ~~~~~~~~~~ 237 (699)
...+-.+..+
T Consensus 252 ~argG~aLs~ 261 (429)
T TIGR01425 252 HAKGGGALSA 261 (429)
T ss_pred CCCccHHhhh
Confidence 8766544433
No 294
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=5.9e-05 Score=74.69 Aligned_cols=70 Identities=27% Similarity=0.388 Sum_probs=43.1
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhc---CCCeeEEEEecCCCcccc-hHHHHHH----Hhh--CCCCCcE
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK---QPSCLILAVTPANSDLAN-SDALQIA----GIA--DPDGYRT 218 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~---~~~~iIL~V~~a~~d~~~-~~~l~l~----~~~--dp~g~rt 218 (699)
.++|||+||- ...+....+|+. ..- .|++|+++-....+ .++-.+. -.. ...+.++
T Consensus 83 ~~~LVD~PGH-------------~rlR~kl~e~~~~~~~ak-aiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~v 148 (238)
T KOG0090|consen 83 NVTLVDLPGH-------------SRLRRKLLEYLKHNYSAK-AIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPV 148 (238)
T ss_pred ceEEEeCCCc-------------HHHHHHHHHHccccccce-eEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCE
Confidence 4799999994 356666777777 455 44555554433322 2332222 121 3457899
Q ss_pred EEeecccccCCCcc
Q 005389 219 IGIITKLDIMDRGT 232 (699)
Q Consensus 219 i~VlTK~D~~~~~~ 232 (699)
++.+||-|+....+
T Consensus 149 LIaCNKqDl~tAkt 162 (238)
T KOG0090|consen 149 LIACNKQDLFTAKT 162 (238)
T ss_pred EEEecchhhhhcCc
Confidence 99999999986543
No 295
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=5.5e-05 Score=82.39 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=58.7
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccC
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
+++||||||-.... ...+. .+..++.. ..++ -+++|++|.. ...+....++.+.. -.-.-+|+||+|..
T Consensus 322 DvVLIDTaGRs~kd----~~lm~-EL~~~lk~--~~Pd-evlLVLsATt--k~~d~~~i~~~F~~-~~idglI~TKLDET 390 (436)
T PRK11889 322 DYILIDTAGKNYRA----SETVE-EMIETMGQ--VEPD-YICLTLSASM--KSKDMIEIITNFKD-IHIDGIVFTKFDET 390 (436)
T ss_pred CEEEEeCccccCcC----HHHHH-HHHHHHhh--cCCC-eEEEEECCcc--ChHHHHHHHHHhcC-CCCCEEEEEcccCC
Confidence 79999999975421 11122 22333221 2355 4455566653 23455667777765 34567889999998
Q ss_pred CCcccHHHHhcCCccccccCEEEEEcCChhhhh
Q 005389 229 DRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (699)
Q Consensus 229 ~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (699)
..+-.+.+++... .+.+.|++.-.+-++|+.
T Consensus 391 ~k~G~iLni~~~~--~lPIsyit~GQ~VPeDI~ 421 (436)
T PRK11889 391 ASSGELLKIPAVS--SAPIVLMTDGQDVKKNIH 421 (436)
T ss_pred CCccHHHHHHHHH--CcCEEEEeCCCCCCcchh
Confidence 8766665554332 334567777666666654
No 296
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.86 E-value=0.00026 Score=75.76 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.-+.|+|+|.+|+|||||++.|.+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999764
No 297
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=9e-05 Score=86.94 Aligned_cols=136 Identities=18% Similarity=0.238 Sum_probs=85.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
....|.|+|..-+|||||.++|+=.. |...+ + ++. ..|..+.|+.+..++
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~t------G~i~k-~--------------G~v--~~g~~~~D~~e~Eqe------- 58 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYT------GIISK-I--------------GEV--HDGAATMDWMEQEQE------- 58 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHc------CCcCC-C--------------ccc--cCCCccCCCcHHHHh-------
Confidence 45679999999999999999997331 11111 0 000 113445666554433
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
.+-.+....+.+...+ ...+.||||||-.+- ..-+.+.++-.|..| +|++|..+...+. .
T Consensus 59 ---RGITI~saa~s~~~~~--~~~iNlIDTPGHVDF-------------t~EV~rslrvlDgav-vVvdaveGV~~QT-E 118 (697)
T COG0480 59 ---RGITITSAATTLFWKG--DYRINLIDTPGHVDF-------------TIEVERSLRVLDGAV-VVVDAVEGVEPQT-E 118 (697)
T ss_pred ---cCCEEeeeeeEEEEcC--ceEEEEeCCCCcccc-------------HHHHHHHHHhhcceE-EEEECCCCeeecH-H
Confidence 1233344444555443 347999999997643 223345566666444 4455666655544 5
Q ss_pred HHHHhhCCCCCcEEEeecccccCCCc
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
.+.++++..+.|.++++||+|.+...
T Consensus 119 tv~rqa~~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 119 TVWRQADKYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred HHHHHHhhcCCCeEEEEECccccccC
Confidence 67788888899999999999998543
No 298
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.76 E-value=0.0001 Score=79.48 Aligned_cols=26 Identities=35% Similarity=0.602 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~l 73 (699)
-++.|||-+|+|||||||+|+|+...
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~ 158 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVA 158 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccce
Confidence 45999999999999999999999863
No 299
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.74 E-value=7.8e-05 Score=81.73 Aligned_cols=42 Identities=29% Similarity=0.439 Sum_probs=30.3
Q ss_pred CCCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 21 ~~~~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-+..+-.+++.|.+... -..|+|||.+|+|||||+|+|++..
T Consensus 137 ~g~gv~eL~~~l~~~~~---------~~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 137 KGNGIDELLDKIKKARN---------KKDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CCCCHHHHHHHHHHHhC---------CCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34455555555554311 1479999999999999999999864
No 300
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=97.71 E-value=7.2e-05 Score=74.92 Aligned_cols=117 Identities=19% Similarity=0.238 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||+|.-.+++..|...-. ++.. ..|..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~-------------ptie-d~y~k-------------------------- 42 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYD-------------PTIE-DSYRK-------------------------- 42 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccC-------------CCcc-ccceE--------------------------
Confidence 4579999999999999999998887632211 1100 01111
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH--
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (699)
.+.+. .....|.|+||+|.. ....|-..|+...++.+|+..-.+ ..+=.++
T Consensus 43 ------------~~~v~-~~~~~l~ilDt~g~~-------------~~~~~~~~~~~~~~gF~lVysitd-~~SF~~~~~ 95 (196)
T KOG0395|consen 43 ------------ELTVD-GEVCMLEILDTAGQE-------------EFSAMRDLYIRNGDGFLLVYSITD-RSSFEEAKQ 95 (196)
T ss_pred ------------EEEEC-CEEEEEEEEcCCCcc-------------cChHHHHHhhccCcEEEEEEECCC-HHHHHHHHH
Confidence 11222 122468899999922 334555679999987766643222 1111122
Q ss_pred -HHHH-HhhCCCCCcEEEeecccccCCC
Q 005389 205 -LQIA-GIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 -l~l~-~~~dp~g~rti~VlTK~D~~~~ 230 (699)
++.+ +..+....|+++|.||+|+...
T Consensus 96 l~~~I~r~~~~~~~PivlVGNK~Dl~~~ 123 (196)
T KOG0395|consen 96 LREQILRVKGRDDVPIILVGNKCDLERE 123 (196)
T ss_pred HHHHHHHhhCcCCCCEEEEEEcccchhc
Confidence 2222 2223345699999999999864
No 301
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00029 Score=83.09 Aligned_cols=172 Identities=23% Similarity=0.288 Sum_probs=90.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCC--------CcccceeecCCCccccChhHHHHHHH
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKT--------DEEYGEFLHLPGKRFYDFSEIRREIQ 120 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~--------~~~~~~~~~~~g~~~~d~~~i~~~i~ 120 (699)
-|++||.+|+||||++..|.+.-.+-.+.. . +-+...+. -..|+.....+-....+..++.+.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~k----k---V~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~ 259 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGAD----Q---LALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA 259 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCC----e---EEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH
Confidence 468999999999999999998731111110 0 11111111 11233333222222234445544443
Q ss_pred HHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCccc
Q 005389 121 AQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA 200 (699)
Q Consensus 121 ~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~ 200 (699)
... ..+++||||||..... ..+.+.+..+.. ...+. -+++|+++...
T Consensus 260 ~~~-----------------------~~D~VLIDTAGRs~~d-----~~l~eel~~l~~--~~~p~-e~~LVLsAt~~-- 306 (767)
T PRK14723 260 ALG-----------------------DKHLVLIDTVGMSQRD-----RNVSEQIAMLCG--VGRPV-RRLLLLNAASH-- 306 (767)
T ss_pred Hhc-----------------------CCCEEEEeCCCCCccC-----HHHHHHHHHHhc--cCCCC-eEEEEECCCCc--
Confidence 211 1269999999976431 222223332221 22344 45666676642
Q ss_pred chHHHHHHHhhCCCC--CcEEEeecccccCCCcccHHHHhcCCccccccCEEEEEcCChhhhhc
Q 005389 201 NSDALQIAGIADPDG--YRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMF 262 (699)
Q Consensus 201 ~~~~l~l~~~~dp~g--~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~~ 262 (699)
..+..++++.+.... ..+=+|+||+|....+-...+++... .+.+.|++.-.+-++|+..
T Consensus 307 ~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~~--~lPI~yit~GQ~VPdDL~~ 368 (767)
T PRK14723 307 GDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIRH--RLPVHYVSTGQKVPEHLEL 368 (767)
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHHHH--CCCeEEEecCCCChhhccc
Confidence 222234555554321 35678899999988766666555433 3445677777666667653
No 302
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.70 E-value=0.001 Score=68.37 Aligned_cols=222 Identities=18% Similarity=0.248 Sum_probs=111.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccc------------eee-----cCCCcc
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYG------------EFL-----HLPGKR 108 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~------------~~~-----~~~g~~ 108 (699)
..+-|+|||=-||||+|++..|.+.-. .... .|.+++|.+.-..-.|. +.. ...|..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~-~~~~-----ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI 91 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH-AKKT-----PPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGI 91 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh-hccC-----CCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcch
Confidence 455789999999999999999976421 1111 25666654332211111 110 011221
Q ss_pred -------ccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCC----CCCCCchHHHHHHHHH
Q 005389 109 -------FYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKV----PVGEQPADIEARIRTM 177 (699)
Q Consensus 109 -------~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~----~~~~q~~di~~~i~~l 177 (699)
.+.|+++...|+...+. .+..||||||=+.. +.|. .+.+
T Consensus 92 ~TsLNLF~tk~dqv~~~iek~~~~----------------------~~~~liDTPGQIE~FtWSAsGs-------IIte- 141 (366)
T KOG1532|consen 92 VTSLNLFATKFDQVIELIEKRAEE----------------------FDYVLIDTPGQIEAFTWSASGS-------IITE- 141 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcc----------------------cCEEEEcCCCceEEEEecCCcc-------chHh-
Confidence 12344444444433221 36899999996433 2221 2222
Q ss_pred HHHHhcCCCeeEEEEecCCCcccc----hHHHHHHHhhCCCCCcEEEeecccccCCCccc--HH---HHhcCCccccccC
Q 005389 178 IMSYIKQPSCLILAVTPANSDLAN----SDALQIAGIADPDGYRTIGIITKLDIMDRGTD--AR---NLLLGKVIPLRLG 248 (699)
Q Consensus 178 v~~yi~~~~~iIL~V~~a~~d~~~----~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~--~~---~~l~~~~~~l~lG 248 (699)
.....-.++|++|++....-.. +..+--+.-+-....++|+|+||.|+.+.+-- |. +.++........+
T Consensus 142 --~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~ 219 (366)
T KOG1532|consen 142 --TLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESS 219 (366)
T ss_pred --hHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccc
Confidence 2222233577777664432211 12233333444557899999999999986531 21 1111111112334
Q ss_pred EEEEEcCChhhhhccccHHHHHHHHHHhcCCCCcc-cCccccCCcchHHHHHHHHHHHHHHhhhhhHHHH
Q 005389 249 YVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVY-NGLADRCGVPQLAKKLNQILVQHIKAILPGLKSR 317 (699)
Q Consensus 249 ~~~V~nrs~~d~~~~~s~~~~~~~E~~fF~~~~~~-~~~~~~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~ 317 (699)
|+.-..| |+ ++.- .+|+++-..- .+...+.|...+...+.+.+.+.-+.--|.....
T Consensus 220 y~s~l~~---------Sm--SL~l-eeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ykp~~Ek~ 277 (366)
T KOG1532|consen 220 YMSNLTR---------SM--SLML-EEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYKPEYEKK 277 (366)
T ss_pred hhHHhhh---------hH--HHHH-HHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4321111 11 1111 2454432110 1223578888888888888888877777766443
No 303
>PRK13768 GTPase; Provisional
Probab=97.70 E-value=8.9e-05 Score=77.30 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=42.6
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcC-CCeeEEEEecCCCcccchHH-----HHHHHhhCCCCCcEEEee
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQ-PSCLILAVTPANSDLANSDA-----LQIAGIADPDGYRTIGII 222 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~-~~~iIL~V~~a~~d~~~~~~-----l~l~~~~dp~g~rti~Vl 222 (699)
++.+||+||..+.... ......++ +++.. ...++++|+|+.......+. +.+..+. ..+.+.+.|+
T Consensus 98 ~~~~~d~~g~~~~~~~------~~~~~~~~-~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~ 169 (253)
T PRK13768 98 DYVLVDTPGQMELFAF------RESGRKLV-ERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVL 169 (253)
T ss_pred CEEEEeCCcHHHHHhh------hHHHHHHH-HHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEE
Confidence 7899999997543110 11122222 33332 13578888887643333221 1111222 3478999999
Q ss_pred cccccCCCcc
Q 005389 223 TKLDIMDRGT 232 (699)
Q Consensus 223 TK~D~~~~~~ 232 (699)
||+|+.+..+
T Consensus 170 nK~D~~~~~~ 179 (253)
T PRK13768 170 NKADLLSEEE 179 (253)
T ss_pred EhHhhcCchh
Confidence 9999987643
No 304
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=4.4e-05 Score=82.52 Aligned_cols=84 Identities=20% Similarity=0.305 Sum_probs=53.6
Q ss_pred CCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-------cc--c
Q 005389 131 KGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-------LA--N 201 (699)
Q Consensus 131 ~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-------~~--~ 201 (699)
.|++-+.-......+. +.++|+|+||.. ..+.+|+.. ...+|+.||+|. |+.+ .. +
T Consensus 69 rGvTi~~~~~~fet~k-~~~tIiDaPGHr------------dFvknmItG-asqAD~aVLVV~-a~~~efE~g~~~~gQt 133 (428)
T COG5256 69 RGVTIDVAHSKFETDK-YNFTIIDAPGHR------------DFVKNMITG-ASQADVAVLVVD-ARDGEFEAGFGVGGQT 133 (428)
T ss_pred cceEEEEEEEEeecCC-ceEEEeeCCchH------------HHHHHhhcc-hhhccEEEEEEE-CCCCccccccccCCch
Confidence 4555555555555554 489999999932 366777654 345776766654 4433 22 2
Q ss_pred hHHHHHHHhhCCCCCcEEEeecccccCCCc
Q 005389 202 SDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 202 ~~~l~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
.+...|++.+. -...|+++||+|.++-.
T Consensus 134 rEH~~La~tlG--i~~lIVavNKMD~v~wd 161 (428)
T COG5256 134 REHAFLARTLG--IKQLIVAVNKMDLVSWD 161 (428)
T ss_pred hHHHHHHHhcC--CceEEEEEEcccccccC
Confidence 33355666654 47889999999999733
No 305
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.00019 Score=66.04 Aligned_cols=118 Identities=18% Similarity=0.272 Sum_probs=74.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
+..-+++|+.++|||.||..++..+|+. .||-.+-+ +++
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfma-------dcphtigv-------efg--------------------------- 49 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMA-------DCPHTIGV-------EFG--------------------------- 49 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhh-------cCCcccce-------ecc---------------------------
Confidence 3457899999999999999999988742 24421110 111
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc---ccchH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD---LANSD 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d---~~~~~ 203 (699)
.--+++++.. ..|.+|||.| ++.++..+++|.+.+...+++ -+.... -.-+.
T Consensus 50 ----------triievsgqk-iklqiwdtag-------------qerfravtrsyyrgaagalmv-yditrrstynhlss 104 (215)
T KOG0097|consen 50 ----------TRIIEVSGQK-IKLQIWDTAG-------------QERFRAVTRSYYRGAAGALMV-YDITRRSTYNHLSS 104 (215)
T ss_pred ----------eeEEEecCcE-EEEEEeeccc-------------HHHHHHHHHHHhccccceeEE-EEehhhhhhhhHHH
Confidence 1123333333 3699999999 678999999999987644443 332211 11233
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
++.-++.+..-..-++.+-||.|+-+.
T Consensus 105 wl~dar~ltnpnt~i~lignkadle~q 131 (215)
T KOG0097|consen 105 WLTDARNLTNPNTVIFLIGNKADLESQ 131 (215)
T ss_pred HHhhhhccCCCceEEEEecchhhhhhc
Confidence 455556665445556677799999754
No 306
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=7.3e-05 Score=81.72 Aligned_cols=103 Identities=19% Similarity=0.209 Sum_probs=52.9
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch-HHHHHHHhhC--CC---CCcEEEee
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS-DALQIAGIAD--PD---GYRTIGII 222 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~-~~l~l~~~~d--p~---g~rti~Vl 222 (699)
+++||||||..... ..+.+.+..+ .....+. -.++|++|+.....- +.++-.+... |. ...+-+|+
T Consensus 217 DlVLIDTaG~~~~d-----~~l~e~La~L--~~~~~~~-~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~ 288 (374)
T PRK14722 217 HMVLIDTIGMSQRD-----RTVSDQIAML--HGADTPV-QRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCIL 288 (374)
T ss_pred CEEEEcCCCCCccc-----HHHHHHHHHH--hccCCCC-eEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEE
Confidence 79999999986431 1222232222 1112233 445666766544332 2222222221 11 12467889
Q ss_pred cccccCCCcccHHHHhcCCccccccCEEEEEcCChhhhh
Q 005389 223 TKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (699)
Q Consensus 223 TK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (699)
||+|.....-...+++... .+.+.|++.-.+-++|+.
T Consensus 289 TKlDEt~~~G~~l~~~~~~--~lPi~yvt~Gq~VPedl~ 325 (374)
T PRK14722 289 TKLDEASNLGGVLDTVIRY--KLPVHYVSTGQKVPENLY 325 (374)
T ss_pred eccccCCCccHHHHHHHHH--CcCeEEEecCCCCCcccc
Confidence 9999987765555554332 344556666656555554
No 307
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.66 E-value=8.6e-05 Score=78.02 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-..|++|..|+|||||||+|.+..
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchh
Confidence 357899999999999999998853
No 308
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.65 E-value=0.00028 Score=67.65 Aligned_cols=46 Identities=28% Similarity=0.273 Sum_probs=33.6
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 22 ~~~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
+..+-.+.+.|.+.+... -...+++++|.+++||||++|+|.+...
T Consensus 81 ~~gi~~L~~~l~~~~~~~-----~~~~~~~~ig~~~~Gkssl~~~l~~~~~ 126 (156)
T cd01859 81 RLGTKILRRTIKELAKID-----GKEGKVGVVGYPNVGKSSIINALKGRHS 126 (156)
T ss_pred cccHHHHHHHHHHHHhhc-----CCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 445666666666654421 2346789999999999999999998754
No 309
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.64 E-value=0.00027 Score=66.51 Aligned_cols=111 Identities=14% Similarity=0.207 Sum_probs=70.3
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH-------HHHHhhCCCCCcEEE
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL-------QIAGIADPDGYRTIG 220 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l-------~l~~~~dp~g~rti~ 220 (699)
.+|.||||.| ++.+..+---|.+..+..+|+.. ++..+.+ .-++.......-.++
T Consensus 62 a~L~IWDTAG-------------QErfHALGPIYYRgSnGalLVyD-----ITDrdSFqKVKnWV~Elr~mlGnei~l~I 123 (218)
T KOG0088|consen 62 ADLHIWDTAG-------------QERFHALGPIYYRGSNGALLVYD-----ITDRDSFQKVKNWVLELRTMLGNEIELLI 123 (218)
T ss_pred eeeeeeeccc-------------hHhhhccCceEEeCCCceEEEEe-----ccchHHHHHHHHHHHHHHHHhCCeeEEEE
Confidence 4799999999 34555665568899987777742 2223332 233444455567889
Q ss_pred eecccccCCCcccHHHHhcCCccccccCEEEEEcCChhhhhccccHHHHHHHHHHhcCCCCcccCccccCCcchHHHHHH
Q 005389 221 IITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLN 300 (699)
Q Consensus 221 VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~~~~s~~~~~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~ 300 (699)
|-||+|+-.+. ..+.+++.+.-+.--..+ .-.++++..||..|...|.
T Consensus 124 VGNKiDLEeeR-------------------------------~Vt~qeAe~YAesvGA~y-~eTSAk~N~Gi~elFe~Lt 171 (218)
T KOG0088|consen 124 VGNKIDLEEER-------------------------------QVTRQEAEAYAESVGALY-METSAKDNVGISELFESLT 171 (218)
T ss_pred ecCcccHHHhh-------------------------------hhhHHHHHHHHHhhchhh-eecccccccCHHHHHHHHH
Confidence 99999996431 234555554433322211 1246678899999999888
Q ss_pred HHHHHHHH
Q 005389 301 QILVQHIK 308 (699)
Q Consensus 301 ~~L~~~i~ 308 (699)
....+|..
T Consensus 172 ~~MiE~~s 179 (218)
T KOG0088|consen 172 AKMIEHSS 179 (218)
T ss_pred HHHHHHhh
Confidence 87776653
No 310
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00062 Score=76.99 Aligned_cols=100 Identities=21% Similarity=0.233 Sum_probs=53.0
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
.+++||||||..... ....+.+..+ ... ... ..++|++++.. ..+...+++.+... ...-+|+||+|.
T Consensus 429 ~DLVLIDTaG~s~~D-----~~l~eeL~~L-~aa-~~~--a~lLVLpAtss--~~Dl~eii~~f~~~-~~~gvILTKlDE 496 (559)
T PRK12727 429 YKLVLIDTAGMGQRD-----RALAAQLNWL-RAA-RQV--TSLLVLPANAH--FSDLDEVVRRFAHA-KPQGVVLTKLDE 496 (559)
T ss_pred CCEEEecCCCcchhh-----HHHHHHHHHH-HHh-hcC--CcEEEEECCCC--hhHHHHHHHHHHhh-CCeEEEEecCcC
Confidence 379999999986321 1111222222 122 222 34445555543 23333445555432 457799999999
Q ss_pred CCCcccHHHHhcCCccccccCEEEEEcCChhhhh
Q 005389 228 MDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (699)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (699)
........+++.. ..+.+.|++.-.+-++|+.
T Consensus 497 t~~lG~aLsv~~~--~~LPI~yvt~GQ~VPeDL~ 528 (559)
T PRK12727 497 TGRFGSALSVVVD--HQMPITWVTDGQRVPDDLH 528 (559)
T ss_pred ccchhHHHHHHHH--hCCCEEEEeCCCCchhhhh
Confidence 7665555555432 2344556666555555543
No 311
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.63 E-value=0.001 Score=69.88 Aligned_cols=101 Identities=14% Similarity=0.093 Sum_probs=57.5
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
.++.||||||-.... ...++ .+.++.. ..+++ .+++|++|+.. .+++...++.+.. -...-+|+||.|.
T Consensus 155 ~D~ViIDt~Gr~~~~----~~~l~-el~~~~~--~~~~~-~~~LVl~a~~~--~~d~~~~~~~f~~-~~~~~~I~TKlDe 223 (270)
T PRK06731 155 VDYILIDTAGKNYRA----SETVE-EMIETMG--QVEPD-YICLTLSASMK--SKDMIEIITNFKD-IHIDGIVFTKFDE 223 (270)
T ss_pred CCEEEEECCCCCcCC----HHHHH-HHHHHHh--hhCCC-eEEEEEcCccC--HHHHHHHHHHhCC-CCCCEEEEEeecC
Confidence 379999999975321 11222 2222221 22454 45666666543 2355667777765 3556788999999
Q ss_pred CCCcccHHHHhcCCccccccCEEEEEcCChhhhh
Q 005389 228 MDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (699)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (699)
...+-.+.++.... .+.+.|++.-.+-++|+.
T Consensus 224 t~~~G~~l~~~~~~--~~Pi~~it~Gq~vp~di~ 255 (270)
T PRK06731 224 TASSGELLKIPAVS--SAPIVLMTDGQDVKKNIH 255 (270)
T ss_pred CCCccHHHHHHHHH--CcCEEEEeCCCCCCcchh
Confidence 88766555544322 233456665555555543
No 312
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.63 E-value=0.00022 Score=76.68 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=51.6
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHH---HHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTM---IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~l---v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK 224 (699)
.+++||||||..... ....+.++.+ +...+.....-+++|++|+.. ++++.-++.....-...-+|+||
T Consensus 197 ~D~ViIDTaGr~~~~-----~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g---~~~~~~a~~f~~~~~~~giIlTK 268 (318)
T PRK10416 197 IDVLIIDTAGRLHNK-----TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG---QNALSQAKAFHEAVGLTGIILTK 268 (318)
T ss_pred CCEEEEeCCCCCcCC-----HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC---hHHHHHHHHHHhhCCCCEEEEEC
Confidence 479999999976432 1112233332 222233333356677777742 33344455544333567899999
Q ss_pred cccCCCcccHHHHhcCCccccccCEEEE
Q 005389 225 LDIMDRGTDARNLLLGKVIPLRLGYVGV 252 (699)
Q Consensus 225 ~D~~~~~~~~~~~l~~~~~~l~lG~~~V 252 (699)
+|....+-...+++.. ..+..-|+++
T Consensus 269 lD~t~~~G~~l~~~~~--~~~Pi~~v~~ 294 (318)
T PRK10416 269 LDGTAKGGVVFAIADE--LGIPIKFIGV 294 (318)
T ss_pred CCCCCCccHHHHHHHH--HCCCEEEEeC
Confidence 9987766555554422 2333445553
No 313
>PRK00098 GTPase RsgA; Reviewed
Probab=97.61 E-value=0.00018 Score=76.92 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
-.++++|.+|+|||||||+|+|...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 3689999999999999999999854
No 314
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00018 Score=79.90 Aligned_cols=100 Identities=19% Similarity=0.130 Sum_probs=55.2
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccC
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
++.||||+|..... ....+.+..+. ....+. -+++|++|+... .+..+.++.+... .-.-+|+||+|..
T Consensus 271 d~VLIDTaGrsqrd-----~~~~~~l~~l~--~~~~~~-~~~LVl~at~~~--~~~~~~~~~f~~~-~~~~~I~TKlDEt 339 (420)
T PRK14721 271 HMVLIDTVGMSQRD-----QMLAEQIAMLS--QCGTQV-KHLLLLNATSSG--DTLDEVISAYQGH-GIHGCIITKVDEA 339 (420)
T ss_pred CEEEecCCCCCcch-----HHHHHHHHHHh--ccCCCc-eEEEEEcCCCCH--HHHHHHHHHhcCC-CCCEEEEEeeeCC
Confidence 68999999987431 12222333221 112233 455566666433 2334555555543 4567889999998
Q ss_pred CCcccHHHHhcCCccccccCEEEEEcCChhhhh
Q 005389 229 DRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (699)
Q Consensus 229 ~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (699)
...-...+++... .+.+.|++.-.+-+.|+.
T Consensus 340 ~~~G~~l~~~~~~--~lPi~yvt~Gq~VP~Dl~ 370 (420)
T PRK14721 340 ASLGIALDAVIRR--KLVLHYVTNGQKVPEDLH 370 (420)
T ss_pred CCccHHHHHHHHh--CCCEEEEECCCCchhhhh
Confidence 7766555554332 234456665555555654
No 315
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00084 Score=76.74 Aligned_cols=135 Identities=16% Similarity=0.245 Sum_probs=85.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHH
Q 005389 43 STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (699)
Q Consensus 43 ~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (699)
..+.-|-++|+|..-+||+-||-.|-|..+---..|..|. .-|..++..+.|++.....
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitq---------------------qIgAt~fp~~ni~e~tk~~ 529 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQ---------------------QIGATYFPAENIREKTKEL 529 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccccccccceee---------------------eccccccchHHHHHHHHHH
Confidence 4678899999999999999999999887653222222221 1133444555554433222
Q ss_pred hhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch
Q 005389 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (699)
Q Consensus 123 t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (699)
... .+. + -.+|.+.+|||||. +.+.++-.+....+| +.+.|++..+.+..+
T Consensus 530 ~~~----~K~------~-----~kvPg~lvIdtpgh-------------EsFtnlRsrgsslC~-~aIlvvdImhGlepq 580 (1064)
T KOG1144|consen 530 KKD----AKK------R-----LKVPGLLVIDTPGH-------------ESFTNLRSRGSSLCD-LAILVVDIMHGLEPQ 580 (1064)
T ss_pred Hhh----hhh------h-----cCCCeeEEecCCCc-------------hhhhhhhhccccccc-eEEEEeehhccCCcc
Confidence 211 110 1 12467999999993 355666666677787 556666777777665
Q ss_pred HHHHHHHhhCCCCCcEEEeecccccC
Q 005389 203 DALQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 203 ~~l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
. +.-+..+.....+.|+.+||+|.+
T Consensus 581 t-iESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 581 T-IESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred h-hHHHHHHHhcCCCeEEeehhhhhh
Confidence 4 233344444568999999999997
No 316
>PRK13796 GTPase YqeH; Provisional
Probab=97.60 E-value=6e-05 Score=82.78 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
..++|||.+|+|||||||+|++..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhc
Confidence 369999999999999999999753
No 317
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.57 E-value=0.00034 Score=78.41 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=72.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
--|||+||+.|+||||||-+|+..+|.|.-. -|.|- +. .|
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP---~rl~~-i~---------------IP--------------------- 48 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVP---RRLPR-IL---------------IP--------------------- 48 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhcccccc---ccCCc-cc---------------cC---------------------
Confidence 3479999999999999999999998732211 11110 00 00
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEE--ec-CCCcccchH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAV--TP-ANSDLANSD 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V--~~-a~~d~~~~~ 203 (699)
.. ..|.....++||++--. +.+..+.+-+++++.|.++- .+ ...|--...
T Consensus 49 ----ad----------vtPe~vpt~ivD~ss~~-------------~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~ 101 (625)
T KOG1707|consen 49 ----AD----------VTPENVPTSIVDTSSDS-------------DDRLCLRKEIRKADVICLVYAVDDESTVDRISTK 101 (625)
T ss_pred ----Cc----------cCcCcCceEEEeccccc-------------chhHHHHHHHhhcCEEEEEEecCChHHhhhhhhh
Confidence 00 01223358999998311 22334455678887443332 11 223444555
Q ss_pred HHHHHHhhCCC--CCcEEEeecccccCCCccc
Q 005389 204 ALQIAGIADPD--GYRTIGIITKLDIMDRGTD 233 (699)
Q Consensus 204 ~l~l~~~~dp~--g~rti~VlTK~D~~~~~~~ 233 (699)
++-++++.-.. ..|+|+|-||+|..+....
T Consensus 102 WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 102 WLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred hhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 66777776533 5899999999999876543
No 318
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.55 E-value=0.00099 Score=74.56 Aligned_cols=102 Identities=22% Similarity=0.198 Sum_probs=55.5
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
.+++||||||..... ......+..++.. ...+. -+++|++++... .+..++++.+...+ ..-+|+||+|.
T Consensus 300 ~DlVlIDt~G~~~~d-----~~~~~~L~~ll~~-~~~~~-~~~LVl~a~~~~--~~l~~~~~~f~~~~-~~~vI~TKlDe 369 (424)
T PRK05703 300 CDVILIDTAGRSQRD-----KRLIEELKALIEF-SGEPI-DVYLVLSATTKY--EDLKDIYKHFSRLP-LDGLIFTKLDE 369 (424)
T ss_pred CCEEEEeCCCCCCCC-----HHHHHHHHHHHhc-cCCCC-eEEEEEECCCCH--HHHHHHHHHhCCCC-CCEEEEecccc
Confidence 379999999985431 1112234444331 22333 445556665432 33345556665444 24688999999
Q ss_pred CCCcccHHHHhcCCccccccCEEEEEcCChhhhh
Q 005389 228 MDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (699)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (699)
........+++.... +.+.|++.-.+-+.|+.
T Consensus 370 t~~~G~i~~~~~~~~--lPv~yit~Gq~VpdDl~ 401 (424)
T PRK05703 370 TSSLGSILSLLIESG--LPISYLTNGQRVPDDIK 401 (424)
T ss_pred cccccHHHHHHHHHC--CCEEEEeCCCCChhhhh
Confidence 776555555544332 33456665555455543
No 319
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.54 E-value=0.00019 Score=78.10 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=28.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccc-CCccccceE
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPL 85 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~-~~~~Tr~p~ 85 (699)
..+.+||-+|+|||||+|+|++...-+.+ ...||-.|.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~ 41 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPN 41 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCc
Confidence 35899999999999999999999741333 345666663
No 320
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.54 E-value=0.00022 Score=75.76 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=23.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~l 73 (699)
..++++|..|+|||||+|+|+|....
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~ 187 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDL 187 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhc
Confidence 57999999999999999999998653
No 321
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.52 E-value=7.2e-05 Score=75.49 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-+|+++|-+|+||||||..|++..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~ 86 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTH 86 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcch
Confidence 479999999999999999998764
No 322
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.0002 Score=76.95 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=28.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccce
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p 84 (699)
.++.+||-+|+|||||+|||+....-+-..-.||=-|
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIeP 39 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEP 39 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccC
Confidence 4689999999999999999998874334444567655
No 323
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.49 E-value=0.00083 Score=82.01 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=45.3
Q ss_pred ccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccc
Q 005389 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (699)
Q Consensus 147 ~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D 226 (699)
.|.++||||||. +.+..+...+...++ ++++|++++..+..+. ...+..+...+.++|+|+||+|
T Consensus 525 ~p~i~fiDTPGh-------------e~F~~lr~~g~~~aD-ivlLVVDa~~Gi~~qT-~e~I~~lk~~~iPiIVViNKiD 589 (1049)
T PRK14845 525 IPGLLFIDTPGH-------------EAFTSLRKRGGSLAD-LAVLVVDINEGFKPQT-IEAINILRQYKTPFVVAANKID 589 (1049)
T ss_pred cCcEEEEECCCc-------------HHHHHHHHhhcccCC-EEEEEEECcccCCHhH-HHHHHHHHHcCCCEEEEEECCC
Confidence 357999999993 234445555667777 5556667766554443 3334444445689999999999
Q ss_pred cCC
Q 005389 227 IMD 229 (699)
Q Consensus 227 ~~~ 229 (699)
+..
T Consensus 590 L~~ 592 (1049)
T PRK14845 590 LIP 592 (1049)
T ss_pred Ccc
Confidence 974
No 324
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.47 E-value=0.00051 Score=70.48 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=64.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCC--ccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
+|+++|..+|||||..+.+.+.- .|..+. ..|-.+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~ve----------------------------------------- 38 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDVE----------------------------------------- 38 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEE-----------------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcCC-CchhccccCCcCCce-----------------------------------------
Confidence 58999999999999999999873 354432 0111110
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH--
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (699)
.-.+.......+.|||.||-...-.. .....-....++.. ++++|.|+..+--..+.
T Consensus 39 ------------~~~v~~~~~~~l~iwD~pGq~~~~~~--------~~~~~~~~if~~v~-~LIyV~D~qs~~~~~~l~~ 97 (232)
T PF04670_consen 39 ------------KSHVRFLSFLPLNIWDCPGQDDFMEN--------YFNSQREEIFSNVG-VLIYVFDAQSDDYDEDLAY 97 (232)
T ss_dssp ------------EEEEECTTSCEEEEEEE-SSCSTTHT--------THTCCHHHHHCTES-EEEEEEETT-STCHHHHHH
T ss_pred ------------EEEEecCCCcEEEEEEcCCccccccc--------cccccHHHHHhccC-EEEEEEEcccccHHHHHHH
Confidence 11111112247999999997533110 00011112345665 66677777733222222
Q ss_pred ----HHHHHhhCCCCCcEEEeecccccCCCcc
Q 005389 205 ----LQIAGIADPDGYRTIGIITKLDIMDRGT 232 (699)
Q Consensus 205 ----l~l~~~~dp~g~rti~VlTK~D~~~~~~ 232 (699)
++.+.+..| +.++.+.+.|+|++.++.
T Consensus 98 ~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~ 128 (232)
T PF04670_consen 98 LSDCIEALRQYSP-NIKVFVFIHKMDLLSEDE 128 (232)
T ss_dssp HHHHHHHHHHHST-T-EEEEEEE-CCCS-HHH
T ss_pred HHHHHHHHHHhCC-CCeEEEEEeecccCCHHH
Confidence 445567777 588999999999986543
No 325
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.47 E-value=0.0007 Score=65.39 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
|-++++|..+||||||++.+++.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 67899999999999999999876
No 326
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.47 E-value=0.001 Score=63.52 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005389 50 VAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~ 70 (699)
|.++|..++||||++..|...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999754
No 327
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.0014 Score=71.41 Aligned_cols=96 Identities=21% Similarity=0.187 Sum_probs=52.1
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhc--CCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D 226 (699)
+++||||||..... ...+.++ ..+.. .++ .+++|.+++. ...+...+++.+.. -...-+|+||+|
T Consensus 287 D~VLIDTAGr~~~d--------~~~l~EL-~~l~~~~~p~-~~~LVLsag~--~~~d~~~i~~~f~~-l~i~glI~TKLD 353 (407)
T PRK12726 287 DHILIDTVGRNYLA--------EESVSEI-SAYTDVVHPD-LTCFTFSSGM--KSADVMTILPKLAE-IPIDGFIITKMD 353 (407)
T ss_pred CEEEEECCCCCccC--------HHHHHHH-HHHhhccCCc-eEEEECCCcc--cHHHHHHHHHhcCc-CCCCEEEEEccc
Confidence 79999999975421 1233332 22222 444 4455666543 23344555555553 245677899999
Q ss_pred cCCCcccHHHHhcCCccccccCEEEEEcCChhh
Q 005389 227 IMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 259 (699)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d 259 (699)
....+-.+.++.... .+.+.|++.-.+-+.|
T Consensus 354 ET~~~G~~Lsv~~~t--glPIsylt~GQ~VpdD 384 (407)
T PRK12726 354 ETTRIGDLYTVMQET--NLPVLYMTDGQNITEN 384 (407)
T ss_pred CCCCccHHHHHHHHH--CCCEEEEecCCCCCcc
Confidence 987765555443222 2334466554444444
No 328
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.00067 Score=74.78 Aligned_cols=102 Identities=18% Similarity=0.152 Sum_probs=57.4
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
.+++||||||.... + ...+. .+..++.. +. ++.-+++|++|+... .+..+.+..+.+. ..+-+|+||.|-
T Consensus 255 ~DlVLIDTaGr~~~---~-~~~l~-el~~~l~~-~~-~~~e~~LVlsat~~~--~~~~~~~~~~~~~-~~~~~I~TKlDe 324 (388)
T PRK12723 255 FDLVLVDTIGKSPK---D-FMKLA-EMKELLNA-CG-RDAEFHLAVSSTTKT--SDVKEIFHQFSPF-SYKTVIFTKLDE 324 (388)
T ss_pred CCEEEEcCCCCCcc---C-HHHHH-HHHHHHHh-cC-CCCeEEEEEcCCCCH--HHHHHHHHHhcCC-CCCEEEEEeccC
Confidence 37999999997632 1 11121 22222221 22 233466677777652 3333555555432 356789999999
Q ss_pred CCCcccHHHHhcCCccccccCEEEEEcCChhhhh
Q 005389 228 MDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (699)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (699)
...+-.+.+++.... +.+.|++.-.+-+.|+.
T Consensus 325 t~~~G~~l~~~~~~~--~Pi~yit~Gq~vPeDl~ 356 (388)
T PRK12723 325 TTCVGNLISLIYEMR--KEVSYVTDGQIVPHNIS 356 (388)
T ss_pred CCcchHHHHHHHHHC--CCEEEEeCCCCChhhhh
Confidence 887766665553322 33467776666666654
No 329
>PRK14974 cell division protein FtsY; Provisional
Probab=97.41 E-value=0.00036 Score=75.48 Aligned_cols=80 Identities=23% Similarity=0.327 Sum_probs=49.2
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
.+++||||||..... .+.-..++.+.. ..+++ .+++|+++.. .+++...++.+...-.-.-+|+||+|.
T Consensus 223 ~DvVLIDTaGr~~~~-----~~lm~eL~~i~~--~~~pd-~~iLVl~a~~---g~d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTD-----ANLMDELKKIVR--VTKPD-LVIFVGDALA---GNDAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred CCEEEEECCCccCCc-----HHHHHHHHHHHH--hhCCc-eEEEeecccc---chhHHHHHHHHHhcCCCCEEEEeeecC
Confidence 369999999986432 222233443321 23566 4556667654 346666666665444557899999999
Q ss_pred CCCcccHHHHh
Q 005389 228 MDRGTDARNLL 238 (699)
Q Consensus 228 ~~~~~~~~~~l 238 (699)
...+-.+.++.
T Consensus 292 ~~~~G~~ls~~ 302 (336)
T PRK14974 292 DAKGGAALSIA 302 (336)
T ss_pred CCCccHHHHHH
Confidence 87766555443
No 330
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.38 E-value=0.0023 Score=66.92 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G 69 (699)
.-+.|.|.|.+++|||||+++|.-
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHH
Confidence 566899999999999999999964
No 331
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.00089 Score=73.97 Aligned_cols=103 Identities=19% Similarity=0.176 Sum_probs=56.3
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhc-CCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK-QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D 226 (699)
.++.||||||..... ...+ +.+..+. ..+. ....-+++|++|+... .+..+.++.+.. -...-+|+||+|
T Consensus 300 ~D~VLIDTaGr~~rd----~~~l-~eL~~~~-~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~-~~~~glIlTKLD 370 (432)
T PRK12724 300 SELILIDTAGYSHRN----LEQL-ERMQSFY-SCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES-LNYRRILLTKLD 370 (432)
T ss_pred CCEEEEeCCCCCccC----HHHH-HHHHHHH-HhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC-CCCCEEEEEccc
Confidence 378999999986331 0111 2222222 2221 1123455666666543 233445555533 345678999999
Q ss_pred cCCCcccHHHHhcCCccccccCEEEEEcCChhhhh
Q 005389 227 IMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (699)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (699)
-...+-.+.+++.. ..+.+-|++.-.+-+.|+.
T Consensus 371 Et~~~G~il~i~~~--~~lPI~ylt~GQ~VPeDi~ 403 (432)
T PRK12724 371 EADFLGSFLELADT--YSKSFTYLSVGQEVPFDIL 403 (432)
T ss_pred CCCCccHHHHHHHH--HCCCEEEEecCCCCCCCHH
Confidence 98776665555432 2334457776666666654
No 332
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.32 E-value=0.00083 Score=67.32 Aligned_cols=95 Identities=19% Similarity=0.217 Sum_probs=47.1
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccC
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
+++||||||..... .+..+.++++. ..+ .++ -+++|++++......+ ......+. ....-+|+||+|..
T Consensus 85 D~vlIDT~Gr~~~d-----~~~~~el~~~~-~~~-~~~-~~~LVlsa~~~~~~~~--~~~~~~~~-~~~~~lIlTKlDet 153 (196)
T PF00448_consen 85 DLVLIDTAGRSPRD-----EELLEELKKLL-EAL-NPD-EVHLVLSATMGQEDLE--QALAFYEA-FGIDGLILTKLDET 153 (196)
T ss_dssp SEEEEEE-SSSSTH-----HHHHHHHHHHH-HHH-SSS-EEEEEEEGGGGGHHHH--HHHHHHHH-SSTCEEEEESTTSS
T ss_pred CEEEEecCCcchhh-----HHHHHHHHHHh-hhc-CCc-cceEEEecccChHHHH--HHHHHhhc-ccCceEEEEeecCC
Confidence 69999999976331 22223344332 222 444 5666666665432221 12222221 12356779999998
Q ss_pred CCcccHHHHhcCCccccccCEEEEEcCC
Q 005389 229 DRGTDARNLLLGKVIPLRLGYVGVVNRS 256 (699)
Q Consensus 229 ~~~~~~~~~l~~~~~~l~lG~~~V~nrs 256 (699)
.......+++... .+.+.|++.-.+-
T Consensus 154 ~~~G~~l~~~~~~--~~Pi~~it~Gq~V 179 (196)
T PF00448_consen 154 ARLGALLSLAYES--GLPISYITTGQRV 179 (196)
T ss_dssp STTHHHHHHHHHH--TSEEEEEESSSST
T ss_pred CCcccceeHHHHh--CCCeEEEECCCCh
Confidence 7765555444332 2233455443333
No 333
>PRK10867 signal recognition particle protein; Provisional
Probab=97.30 E-value=0.0015 Score=73.00 Aligned_cols=79 Identities=25% Similarity=0.308 Sum_probs=47.1
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
.+++||||||..... ...-..+..+ ...+ .++.+ ++|+++.. .+++...++.+...-..+-+|+||+|.
T Consensus 184 ~DvVIIDTaGrl~~d-----~~lm~eL~~i-~~~v-~p~ev-llVlda~~---gq~av~~a~~F~~~~~i~giIlTKlD~ 252 (433)
T PRK10867 184 YDVVIVDTAGRLHID-----EELMDELKAI-KAAV-NPDEI-LLVVDAMT---GQDAVNTAKAFNEALGLTGVILTKLDG 252 (433)
T ss_pred CCEEEEeCCCCcccC-----HHHHHHHHHH-HHhh-CCCeE-EEEEeccc---HHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 479999999975431 2222222222 2222 45544 66666643 467777777776544557789999997
Q ss_pred CCCcccHHHH
Q 005389 228 MDRGTDARNL 237 (699)
Q Consensus 228 ~~~~~~~~~~ 237 (699)
...+-.+..+
T Consensus 253 ~~rgG~alsi 262 (433)
T PRK10867 253 DARGGAALSI 262 (433)
T ss_pred cccccHHHHH
Confidence 6655545444
No 334
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.29 E-value=0.0024 Score=60.11 Aligned_cols=70 Identities=13% Similarity=0.248 Sum_probs=46.8
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHH-HHHhhCCC----CCcEEEeec
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ-IAGIADPD----GYRTIGIIT 223 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~-l~~~~dp~----g~rti~VlT 223 (699)
.|.|.||.|+...+ .++-..|+.-+|+.+|+..+++.. .-+.+. +-+++|.. ..++++..|
T Consensus 61 ~l~lyDTaGlq~~~------------~eLprhy~q~aDafVLVYs~~d~e--Sf~rv~llKk~Idk~KdKKEvpiVVLaN 126 (198)
T KOG3883|consen 61 QLRLYDTAGLQGGQ------------QELPRHYFQFADAFVLVYSPMDPE--SFQRVELLKKEIDKHKDKKEVPIVVLAN 126 (198)
T ss_pred eEEEeecccccCch------------hhhhHhHhccCceEEEEecCCCHH--HHHHHHHHHHHHhhccccccccEEEEec
Confidence 58999999987431 246678999999888887765532 112222 23455543 457777789
Q ss_pred ccccCCCcc
Q 005389 224 KLDIMDRGT 232 (699)
Q Consensus 224 K~D~~~~~~ 232 (699)
|.|+..+.+
T Consensus 127 ~rdr~~p~~ 135 (198)
T KOG3883|consen 127 KRDRAEPRE 135 (198)
T ss_pred hhhcccchh
Confidence 999986544
No 335
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.28 E-value=0.0011 Score=74.38 Aligned_cols=79 Identities=24% Similarity=0.216 Sum_probs=47.8
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccC
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
+++||||||..... .+.-+.++.+ ..+..++ .+++|+++... +++...++.+...-..+-+|+||+|..
T Consensus 177 DvVIIDTAGr~~~d-----~~lm~El~~l--~~~~~pd-evlLVvda~~g---q~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 177 DVIIVDTAGRHALE-----EDLIEEMKEI--KEAVKPD-EVLLVIDATIG---QQAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CEEEEECCCcccch-----HHHHHHHHHH--HHHhccc-ceeEEEecccc---HHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 79999999976431 2222222222 1233455 45556666553 566777777665444567899999987
Q ss_pred CCcccHHHHh
Q 005389 229 DRGTDARNLL 238 (699)
Q Consensus 229 ~~~~~~~~~l 238 (699)
..+-.+..+.
T Consensus 246 a~~G~~ls~~ 255 (437)
T PRK00771 246 AKGGGALSAV 255 (437)
T ss_pred CcccHHHHHH
Confidence 7665554443
No 336
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.0012 Score=72.30 Aligned_cols=68 Identities=24% Similarity=0.269 Sum_probs=43.7
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCC-CcEEEeeccccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDG-YRTIGIITKLDI 227 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g-~rti~VlTK~D~ 227 (699)
.++|||.||.- +.+.+|+.. +...+ ..++|++++..+..+. .+.+.-+|-.| .+-++|+||+|+
T Consensus 51 ~~~fIDvpgh~------------~~i~~miag-~~~~d-~alLvV~~deGl~~qt-gEhL~iLdllgi~~giivltk~D~ 115 (447)
T COG3276 51 VMGFIDVPGHP------------DFISNLLAG-LGGID-YALLVVAADEGLMAQT-GEHLLILDLLGIKNGIIVLTKADR 115 (447)
T ss_pred ceEEeeCCCcH------------HHHHHHHhh-hcCCc-eEEEEEeCccCcchhh-HHHHHHHHhcCCCceEEEEecccc
Confidence 68999999964 466666533 33344 4455567776655554 33344444445 455999999999
Q ss_pred CCCc
Q 005389 228 MDRG 231 (699)
Q Consensus 228 ~~~~ 231 (699)
.++.
T Consensus 116 ~d~~ 119 (447)
T COG3276 116 VDEA 119 (447)
T ss_pred ccHH
Confidence 9753
No 337
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.00028 Score=68.53 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=46.0
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH----HHHHHhhCCCCCcEEEeec
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA----LQIAGIADPDGYRTIGIIT 223 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~----l~l~~~~dp~g~rti~VlT 223 (699)
..++++|.-|- ..+|.+...|..+.+.+|++| |.+....-.++ .++...-+..+.++++..|
T Consensus 61 ~~f~vWDvGGq-------------~k~R~lW~~Y~~~t~~lIfVv-DS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aN 126 (181)
T KOG0070|consen 61 ISFTVWDVGGQ-------------EKLRPLWKHYFQNTQGLIFVV-DSSDRERIEEAKEELHRMLAEPELRNAPLLVFAN 126 (181)
T ss_pred eEEEEEecCCC-------------cccccchhhhccCCcEEEEEE-eCCcHHHHHHHHHHHHHHHcCcccCCceEEEEec
Confidence 36899999883 366788889999998555555 44433333333 2233333345788999999
Q ss_pred ccccCCC
Q 005389 224 KLDIMDR 230 (699)
Q Consensus 224 K~D~~~~ 230 (699)
|.|+-..
T Consensus 127 KqD~~~a 133 (181)
T KOG0070|consen 127 KQDLPGA 133 (181)
T ss_pred hhhcccc
Confidence 9998754
No 338
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0029 Score=68.91 Aligned_cols=204 Identities=18% Similarity=0.269 Sum_probs=109.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHh--CCCCCcccCCccccceEEEEeeccCCCcccceeecCCCc-cccChhHHHHHHHHHhh
Q 005389 48 PQVAVVGSQSSGKSSVLEALV--GRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGK-RFYDFSEIRREIQAQTD 124 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~--G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~-~~~d~~~i~~~i~~~t~ 124 (699)
.+.+||-.+-||||||-|.|+ |..+ +..|.+..+- + ++ ...||-++.++
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaI--q~AG~Vk~rk-------~-------------~~~a~SDWM~iEkq------ 64 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAI--QEAGTVKGRK-------S-------------GKHAKSDWMEIEKQ------ 64 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchh--hhcceeeecc-------C-------------CcccccHHHHHHHh------
Confidence 358999999999999999996 3322 1112111110 0 10 12244344322
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (699)
.|||-..-.+...+.+ .-+.|+||||--+- .+-+.+.+...|+.+ +|++|-..+..+.
T Consensus 65 ------RGISVtsSVMqF~Y~~-~~iNLLDTPGHeDF-------------SEDTYRtLtAvDsAv-MVIDaAKGiE~qT- 122 (528)
T COG4108 65 ------RGISVTSSVMQFDYAD-CLVNLLDTPGHEDF-------------SEDTYRTLTAVDSAV-MVIDAAKGIEPQT- 122 (528)
T ss_pred ------cCceEEeeEEEeccCC-eEEeccCCCCcccc-------------chhHHHHHHhhheee-EEEecccCccHHH-
Confidence 4555444444444443 25899999995432 233344455566554 4556666666655
Q ss_pred HHHHHhhCCCCCcEEEeecccccCCCcc-----cHHHHhcCCccccc------cCEEEEEcCChhhhhccccHHHHHHHH
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMDRGT-----DARNLLLGKVIPLR------LGYVGVVNRSQEDIMFNRSIKDALVAE 273 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~~~~-----~~~~~l~~~~~~l~------lG~~~V~nrs~~d~~~~~s~~~~~~~E 273 (699)
++|..-+.-.+.|++-.+||+|.-...- +.++.|.=..+|+. --|-||..+....+....+
T Consensus 123 ~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~-------- 194 (528)
T COG4108 123 LKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYES-------- 194 (528)
T ss_pred HHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceecccccccCCcccceeeeeccCEEEEecc--------
Confidence 7888777778899999999999864321 12334433334432 2356666654433221000
Q ss_pred HHhcCCCCcccCccccCCcchHHHHHHHHHHHHHHhhh
Q 005389 274 EKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAIL 311 (699)
Q Consensus 274 ~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~i~~~L 311 (699)
. ..........-...+.+.|...|..-+.++++..+
T Consensus 195 -~-~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~ 230 (528)
T COG4108 195 -G-HTDQERRADIVKGLDNPELDALLGEDLAEQLREEL 230 (528)
T ss_pred -C-CCccccccccccCCCChhHHhhhchHHHHHHHHHH
Confidence 0 00000111223445666677777766666655544
No 339
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.24 E-value=0.0041 Score=60.61 Aligned_cols=78 Identities=26% Similarity=0.302 Sum_probs=42.0
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
.++.|+||||..... .+.-..+..+. . ...++ .+++|+++.. ..++++.+..+.....-.-+|+||+|.
T Consensus 83 ~d~viiDt~g~~~~~-----~~~l~~l~~l~-~-~~~~~-~~~lVv~~~~---~~~~~~~~~~~~~~~~~~~viltk~D~ 151 (173)
T cd03115 83 FDVVIVDTAGRLQID-----ENLMEELKKIK-R-VVKPD-EVLLVVDAMT---GQDAVNQAKAFNEALGITGVILTKLDG 151 (173)
T ss_pred CCEEEEECcccchhh-----HHHHHHHHHHH-h-hcCCC-eEEEEEECCC---ChHHHHHHHHHHhhCCCCEEEEECCcC
Confidence 368999999975321 12222333322 1 22355 4445555543 233445555543222257788899999
Q ss_pred CCCcccHHH
Q 005389 228 MDRGTDARN 236 (699)
Q Consensus 228 ~~~~~~~~~ 236 (699)
........+
T Consensus 152 ~~~~g~~~~ 160 (173)
T cd03115 152 DARGGAALS 160 (173)
T ss_pred CCCcchhhh
Confidence 876655433
No 340
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.23 E-value=0.00054 Score=70.75 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=22.7
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCC
Q 005389 52 VVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKT 94 (699)
Q Consensus 52 VvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~ 94 (699)
|+|+.||||||+..++... ++.. -|.+..++|-+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~--~~~~----~~~~~~vNLDPa~~ 37 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW--LESN----GRDVYIVNLDPAVE 37 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH--HTTT-----S-EEEEE--TT-S
T ss_pred CCCCCCCCHHHHHHHHHHH--HHhc----cCCceEEEcchHhc
Confidence 7999999999999999653 2221 24567777765543
No 341
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.22 E-value=0.0021 Score=72.56 Aligned_cols=100 Identities=23% Similarity=0.202 Sum_probs=55.7
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccC
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
++++|||+|..... ..+.+... ++... ..+. -.++|+++.... .+..+.++.+... ..+-+|+||+|..
T Consensus 336 d~VLIDTaGr~~~d-----~~~~e~~~-~l~~~-~~p~-e~~LVLdAt~~~--~~l~~i~~~f~~~-~~~g~IlTKlDet 404 (484)
T PRK06995 336 HIVLIDTIGMSQRD-----RMVSEQIA-MLHGA-GAPV-KRLLLLNATSHG--DTLNEVVQAYRGP-GLAGCILTKLDEA 404 (484)
T ss_pred CeEEeCCCCcChhh-----HHHHHHHH-HHhcc-CCCC-eeEEEEeCCCcH--HHHHHHHHHhccC-CCCEEEEeCCCCc
Confidence 68999999976321 11111111 11111 1133 245666766544 2334556666554 3567889999998
Q ss_pred CCcccHHHHhcCCccccccCEEEEEcCChhhhh
Q 005389 229 DRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (699)
Q Consensus 229 ~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (699)
...-.+.+++... .+.+.|++.-.+-++|+.
T Consensus 405 ~~~G~~l~i~~~~--~lPI~yvt~GQ~VPeDL~ 435 (484)
T PRK06995 405 ASLGGALDVVIRY--KLPLHYVSNGQRVPEDLH 435 (484)
T ss_pred ccchHHHHHHHHH--CCCeEEEecCCCChhhhc
Confidence 7766665554433 344567777666666654
No 342
>PTZ00099 rab6; Provisional
Probab=97.21 E-value=0.0018 Score=63.64 Aligned_cols=68 Identities=22% Similarity=0.248 Sum_probs=42.9
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc--ccch-HHHHHHHhhCCCCCcEEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD--LANS-DALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d--~~~~-~~l~l~~~~dp~g~rti~VlTK 224 (699)
..+.||||||. +..+.+...|++.++++|+++ +.+.. +... .++..+........++++|.||
T Consensus 29 v~l~iwDt~G~-------------e~~~~~~~~~~~~ad~~ilv~-D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 29 VRLQLWDTAGQ-------------ERFRSLIPSYIRDSAAAIVVY-DITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEECCCh-------------HHhhhccHHHhCCCcEEEEEE-ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 47999999994 345567778999998555554 44432 2221 2222222333335778999999
Q ss_pred cccCC
Q 005389 225 LDIMD 229 (699)
Q Consensus 225 ~D~~~ 229 (699)
+|+.+
T Consensus 95 ~DL~~ 99 (176)
T PTZ00099 95 TDLGD 99 (176)
T ss_pred ccccc
Confidence 99964
No 343
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.20 E-value=0.0035 Score=66.08 Aligned_cols=82 Identities=24% Similarity=0.279 Sum_probs=44.9
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHH---HHHHhc-CCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeec
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTM---IMSYIK-QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIIT 223 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~l---v~~yi~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlT 223 (699)
.++.||||||..... ....+.++.+ +...+. .++ -+++|+++.. ..+++..+..+...-...-+|+|
T Consensus 155 ~D~ViIDT~G~~~~d-----~~~~~el~~~~~~~~~~~~~~~~-~~~LVl~a~~---~~~~~~~~~~f~~~~~~~g~IlT 225 (272)
T TIGR00064 155 IDVVLIDTAGRLQNK-----VNLMDELKKIKRVIKKVDKDAPD-EVLLVLDATT---GQNALEQAKVFNEAVGLTGIILT 225 (272)
T ss_pred CCEEEEeCCCCCcch-----HHHHHHHHHHHHHHhcccCCCCc-eEEEEEECCC---CHHHHHHHHHHHhhCCCCEEEEE
Confidence 479999999976431 1222223332 222222 244 5555667653 23334444444332345788999
Q ss_pred ccccCCCcccHHHHh
Q 005389 224 KLDIMDRGTDARNLL 238 (699)
Q Consensus 224 K~D~~~~~~~~~~~l 238 (699)
|+|....+..+.++.
T Consensus 226 KlDe~~~~G~~l~~~ 240 (272)
T TIGR00064 226 KLDGTAKGGIILSIA 240 (272)
T ss_pred ccCCCCCccHHHHHH
Confidence 999987765554443
No 344
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.00035 Score=65.78 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=43.4
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCC--CcccchHHHHHHHh-hCCCCCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN--SDLANSDALQIAGI-ADPDGYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~--~d~~~~~~l~l~~~-~dp~g~rti~VlTK~ 225 (699)
.|.||||.| ++.++.++..|.+.+-..+|...-.+ ..+...+++.-++. .--+..-++++-||+
T Consensus 68 hLQlWDTAG-------------QERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~ 134 (219)
T KOG0081|consen 68 HLQLWDTAG-------------QERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKA 134 (219)
T ss_pred EEeeecccc-------------HHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCcc
Confidence 689999999 67999999999998876666642211 11222222211111 111245678888999
Q ss_pred ccCCC
Q 005389 226 DIMDR 230 (699)
Q Consensus 226 D~~~~ 230 (699)
|+.+.
T Consensus 135 DL~~~ 139 (219)
T KOG0081|consen 135 DLEDQ 139 (219)
T ss_pred chhhh
Confidence 99864
No 345
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.17 E-value=0.00074 Score=71.34 Aligned_cols=105 Identities=22% Similarity=0.316 Sum_probs=63.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
..-+.|.+||-+|+||||++|+|+....-|-..-.||--|-+.+.. .+..+| +-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~-------------v~d~Rf---d~---------- 71 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVE-------------VPDSRF---DL---------- 71 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceee-------------cCchHH---HH----------
Confidence 3556799999999999999999998865333334566555333211 111111 00
Q ss_pred hhcCCCCCccccceEEEEecCCc---cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCC
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHV---LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN 196 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~---~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~ 196 (699)
..++|+|.. ..|+++|..|+++.+..++ -+-+--++.|++.|+| +-|+.+-
T Consensus 72 --------------l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~------GLGN~FLs~iR~vDai-fhVVr~f 125 (391)
T KOG1491|consen 72 --------------LCPIYGPKSKVPAFLTVYDIAGLVKGASAGE------GLGNKFLSHIRHVDAI-FHVVRAF 125 (391)
T ss_pred --------------HHHhcCCcceeeeeEEEEeecccccCcccCc------CchHHHHHhhhhccce-eEEEEec
Confidence 112222221 2699999999998765542 3445556778888844 4555443
No 346
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0018 Score=72.25 Aligned_cols=131 Identities=17% Similarity=0.275 Sum_probs=75.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
+..+.||..---|||||...|+... | |.-+ +...+.+.|--++.++
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~t------g--~i~~------------------~~~q~q~LDkl~vERE-------- 105 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELT------G--TIDN------------------NIGQEQVLDKLQVERE-------- 105 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHh------C--CCCC------------------CCchhhhhhhhhhhhh--------
Confidence 4468999999999999999997542 0 0000 0011223333333222
Q ss_pred cCCCCCccccceEEEEecCC--ccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPH--VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~--~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (699)
.|++-..-...+++.+ ..-|.||||||-.+-+ .-+.+.+.-++.+||+ ++|+.....+..
T Consensus 106 ----RGITIkaQtasify~~~~~ylLNLIDTPGHvDFs-------------~EVsRslaac~G~lLv-VDA~qGvqAQT~ 167 (650)
T KOG0462|consen 106 ----RGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS-------------GEVSRSLAACDGALLV-VDASQGVQAQTV 167 (650)
T ss_pred ----cCcEEEeeeeEEEEEcCCceEEEeecCCCccccc-------------ceehehhhhcCceEEE-EEcCcCchHHHH
Confidence 3343333233333332 2458999999975432 2233455667756655 467777666654
Q ss_pred HHHHHhhCCCCCcEEEeecccccCCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
..+...+. .+..+|-|+||+|+-..
T Consensus 168 anf~lAfe-~~L~iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 168 ANFYLAFE-AGLAIIPVLNKIDLPSA 192 (650)
T ss_pred HHHHHHHH-cCCeEEEeeeccCCCCC
Confidence 44443333 47899999999999643
No 347
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.09 E-value=0.0038 Score=63.00 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
..|.|+|+|..|||||||++.|+..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999999865
No 348
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.06 E-value=0.00094 Score=73.06 Aligned_cols=135 Identities=19% Similarity=0.270 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
.++..|+||...--||+||+.+|+...--=+..+ .. .++..|.+++.++
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e------------------~v-------~ERvMDSnDlEkE------ 51 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFRERE------------------EV-------AERVMDSNDLEKE------ 51 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhcccccccc------------------ch-------hhhhcCccchhhh------
Confidence 3567799999999999999999987641000000 00 1222333333322
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (699)
.|++--...-.|.+.+ ..+.+|||||-.+-. + -+.+-++--|+++|+| +|....-.+.-
T Consensus 52 ------RGITILaKnTav~~~~-~~INIvDTPGHADFG--G-----------EVERvl~MVDgvlLlV-DA~EGpMPQTr 110 (603)
T COG1217 52 ------RGITILAKNTAVNYNG-TRINIVDTPGHADFG--G-----------EVERVLSMVDGVLLLV-DASEGPMPQTR 110 (603)
T ss_pred ------cCcEEEeccceeecCC-eEEEEecCCCcCCcc--c-----------hhhhhhhhcceEEEEE-EcccCCCCchh
Confidence 2222111111222222 468999999976432 1 1222333345566665 45444433332
Q ss_pred HHHHHhhCCCCCcEEEeecccccCCCcc
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMDRGT 232 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~~~~ 232 (699)
...+..-..|.+-|+|+||+|.-+..-
T Consensus 111 -FVlkKAl~~gL~PIVVvNKiDrp~Arp 137 (603)
T COG1217 111 -FVLKKALALGLKPIVVINKIDRPDARP 137 (603)
T ss_pred -hhHHHHHHcCCCcEEEEeCCCCCCCCH
Confidence 334444456889999999999976543
No 349
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.04 E-value=0.0022 Score=66.19 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.-+.|.|.|.+++|||||+++|.-.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999643
No 350
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.03 E-value=0.00072 Score=74.86 Aligned_cols=27 Identities=44% Similarity=0.615 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~l 73 (699)
.-.|.+||-+|+||||+||+|+|.+..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV 340 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV 340 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee
Confidence 456888999999999999999999853
No 351
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.0027 Score=72.00 Aligned_cols=133 Identities=20% Similarity=0.280 Sum_probs=76.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
...|+++|.-.+|||+|+..|++... |... .+.+..++.++. . +.+. +
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~-----~~~e~~lrytD~--l--------------~~E~--------e-- 175 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTH-PDFS-----KNTEADLRYTDT--L--------------FYEQ--------E-- 175 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceecc-cccc-----cccccccccccc--c--------------hhhH--------h--
Confidence 34588999999999999999998864 4433 222222222211 0 0000 0
Q ss_pred cCCCCCccccceEEEEecCCc--cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHV--LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~--~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (699)
.+-++-..+..+-+..-.. .-++++||||-.+- ..+++ ..++-.|.++|+|..+..-.-+.
T Consensus 176 --Rg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF------------~DE~t-a~l~~sDgvVlvvDv~EGVmlnt-- 238 (971)
T KOG0468|consen 176 --RGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNF------------SDETT-ASLRLSDGVVLVVDVAEGVMLNT-- 238 (971)
T ss_pred --cCceEeecceEEEEecCcCceeeeeeecCCCcccc------------hHHHH-HHhhhcceEEEEEEcccCceeeH--
Confidence 0112222333333332222 35899999996532 22222 34566775666554444333332
Q ss_pred HHHHHhhCCCCCcEEEeecccccC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
.++++..-.+..++.+|+||+|++
T Consensus 239 Er~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 239 ERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred HHHHHHHHhccCcEEEEEehhHHH
Confidence 366777777789999999999986
No 352
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=96.98 E-value=0.0022 Score=59.57 Aligned_cols=116 Identities=16% Similarity=0.271 Sum_probs=72.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
--+|.++|--||||+|+|..|.+.+ |+.-.++-
T Consensus 17 EirilllGldnAGKTT~LKqL~sED--~~hltpT~--------------------------------------------- 49 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSED--PRHLTPTN--------------------------------------------- 49 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccCC--hhhccccC---------------------------------------------
Confidence 3469999999999999999999987 33322111
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc---hH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SD 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~ 203 (699)
||+ ..++.+.....|+++|.-| +..+|-....|..+.+.+|+++.+++..... .+
T Consensus 50 -----GFn----~k~v~~~g~f~LnvwDiGG-------------qr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~e 107 (185)
T KOG0074|consen 50 -----GFN----TKKVEYDGTFHLNVWDIGG-------------QRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEE 107 (185)
T ss_pred -----Ccc----eEEEeecCcEEEEEEecCC-------------ccccchhhhhhhhccceEEEEEeCCchHhHHHHHHH
Confidence 111 1111222224699999988 3467778889999999666655533322111 11
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCCc
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
-.++..+..-...++.+..||-|++...
T Consensus 108 l~ELleeeKl~~vpvlIfankQdlltaa 135 (185)
T KOG0074|consen 108 LVELLEEEKLAEVPVLIFANKQDLLTAA 135 (185)
T ss_pred HHHHhhhhhhhccceeehhhhhHHHhhc
Confidence 1233333333456788888999997543
No 353
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0038 Score=69.42 Aligned_cols=45 Identities=22% Similarity=0.401 Sum_probs=33.1
Q ss_pred eeEEEEecCCCcccchHHHHHHHhhCCCC-CcEEEeecccccCCCcc
Q 005389 187 CLILAVTPANSDLANSDALQIAGIADPDG-YRTIGIITKLDIMDRGT 232 (699)
Q Consensus 187 ~iIL~V~~a~~d~~~~~~l~l~~~~dp~g-~rti~VlTK~D~~~~~~ 232 (699)
.++|+.++++..+.-.. ..++.-+.+.| .|++||+|.+|+....+
T Consensus 135 DLVlLlIdgnfGfEMET-mEFLnil~~HGmPrvlgV~ThlDlfk~~s 180 (1077)
T COG5192 135 DLVLLLIDGNFGFEMET-MEFLNILISHGMPRVLGVVTHLDLFKNPS 180 (1077)
T ss_pred heeEEEeccccCceehH-HHHHHHHhhcCCCceEEEEeecccccChH
Confidence 38888889998876544 45555555555 68999999999987544
No 354
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.95 E-value=0.0039 Score=68.10 Aligned_cols=172 Identities=24% Similarity=0.302 Sum_probs=95.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCC--------CcccceeecCCCccccChhHHHHH
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKT--------DEEYGEFLHLPGKRFYDFSEIRRE 118 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~--------~~~~~~~~~~~g~~~~d~~~i~~~ 118 (699)
---|++||++|+||+|.|=-|..+-++-.+. -+.. +..++. -..|+..+..|=+-.++..++..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~---~kVa----iITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~a 275 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK---KKVA----IITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEA 275 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC---cceE----EEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHH
Confidence 3458899999999999999887663210110 0011 111111 124555555555555666777666
Q ss_pred HHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCC-CeeEEEEecCCC
Q 005389 119 IQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQP-SCLILAVTPANS 197 (699)
Q Consensus 119 i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~-~~iIL~V~~a~~ 197 (699)
+....+ .+++||||-|-.... ...+.+| ..|+... +.-+.+|++++.
T Consensus 276 i~~l~~-----------------------~d~ILVDTaGrs~~D--------~~~i~el-~~~~~~~~~i~~~Lvlsat~ 323 (407)
T COG1419 276 IEALRD-----------------------CDVILVDTAGRSQYD--------KEKIEEL-KELIDVSHSIEVYLVLSATT 323 (407)
T ss_pred HHHhhc-----------------------CCEEEEeCCCCCccC--------HHHHHHH-HHHHhccccceEEEEEecCc
Confidence 655433 279999999976432 1233333 3455533 334556777765
Q ss_pred cccchHHHHHHHhhCCCCCcEEEeecccccCCCcccHHHHhcCCccccccCEEEEEcCChhhhhc
Q 005389 198 DLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMF 262 (699)
Q Consensus 198 d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~~ 262 (699)
-. .|...+...+..-+. .-+++||+|-...--+..+++.... +...|+..-.+-+.||..
T Consensus 324 K~--~dlkei~~~f~~~~i-~~~I~TKlDET~s~G~~~s~~~e~~--~PV~YvT~GQ~VPeDI~v 383 (407)
T COG1419 324 KY--EDLKEIIKQFSLFPI-DGLIFTKLDETTSLGNLFSLMYETR--LPVSYVTNGQRVPEDIVV 383 (407)
T ss_pred ch--HHHHHHHHHhccCCc-ceeEEEcccccCchhHHHHHHHHhC--CCeEEEeCCCCCCchhhh
Confidence 33 233345555554333 3467899998765444444443332 234566655666666643
No 355
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.90 E-value=0.0018 Score=66.52 Aligned_cols=135 Identities=21% Similarity=0.352 Sum_probs=77.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
..|.-||.++-|||||++.|.+..| ++.+|+..--.+.+...+ +++.
T Consensus 43 FNilCvGETg~GKsTLmdtLFNt~f---~~~p~~H~~~~V~L~~~T----------------yelq-------------- 89 (406)
T KOG3859|consen 43 FNILCVGETGLGKSTLMDTLFNTKF---ESEPSTHTLPNVKLQANT----------------YELQ-------------- 89 (406)
T ss_pred EEEEEeccCCccHHHHHHHHhcccc---CCCCCccCCCCceeecch----------------hhhh--------------
Confidence 4589999999999999999998876 233333221111111110 0000
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCc-hHHHHHHHHHHHHHhc---------------CCCeeEEE
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQP-ADIEARIRTMIMSYIK---------------QPSCLILA 191 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~-~di~~~i~~lv~~yi~---------------~~~~iIL~ 191 (699)
..-++ ..|++|||-|+.+--..+.. .-|.+.+......|+. +-+..+++
T Consensus 90 -------Esnvr--------lKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYF 154 (406)
T KOG3859|consen 90 -------ESNVR--------LKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYF 154 (406)
T ss_pred -------hcCee--------EEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEE
Confidence 00111 35999999999654222211 2233333333333332 23555667
Q ss_pred EecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCcc
Q 005389 192 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 232 (699)
Q Consensus 192 V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~ 232 (699)
++|..+.+..-| +-..+.+|. ...+|-|+-|.|.+...+
T Consensus 155 I~PTGH~LKslD-Lvtmk~Lds-kVNIIPvIAKaDtisK~e 193 (406)
T KOG3859|consen 155 ISPTGHSLKSLD-LVTMKKLDS-KVNIIPVIAKADTISKEE 193 (406)
T ss_pred ecCCCcchhHHH-HHHHHHHhh-hhhhHHHHHHhhhhhHHH
Confidence 788888776655 334566664 478899999999986543
No 356
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.019 Score=53.36 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=45.8
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH-HHHHHhhCCC---CCcEEEeecc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-LQIAGIADPD---GYRTIGIITK 224 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-l~l~~~~dp~---g~rti~VlTK 224 (699)
.+.++|+-| +..+|.+..+|.....++|+++.+|..+--. +| .++-+.+... ....++..||
T Consensus 62 kfNvwdvGG-------------qd~iRplWrhYy~gtqglIFV~Dsa~~dr~e-eAr~ELh~ii~~~em~~~~~LvlANk 127 (180)
T KOG0071|consen 62 KFNVWDVGG-------------QDKIRPLWRHYYTGTQGLIFVVDSADRDRIE-EARNELHRIINDREMRDAIILILANK 127 (180)
T ss_pred EEeeeeccC-------------chhhhHHHHhhccCCceEEEEEeccchhhHH-HHHHHHHHHhCCHhhhcceEEEEecC
Confidence 478899988 3478899999999999888888777654222 22 2333333222 3556677799
Q ss_pred cccCCC
Q 005389 225 LDIMDR 230 (699)
Q Consensus 225 ~D~~~~ 230 (699)
-|+-+.
T Consensus 128 QDlp~A 133 (180)
T KOG0071|consen 128 QDLPDA 133 (180)
T ss_pred cccccc
Confidence 999764
No 357
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.77 E-value=0.0041 Score=69.55 Aligned_cols=93 Identities=25% Similarity=0.284 Sum_probs=52.7
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
.+++||||||..... ...-..+..+. ....++.+ ++|+++.. .+++...++.+...-.-+-+|+||+|.
T Consensus 183 ~DvVIIDTaGr~~~d-----~~l~~eL~~i~--~~~~p~e~-lLVvda~t---gq~~~~~a~~f~~~v~i~giIlTKlD~ 251 (428)
T TIGR00959 183 FDVVIVDTAGRLQID-----EELMEELAAIK--EILNPDEI-LLVVDAMT---GQDAVNTAKTFNERLGLTGVVLTKLDG 251 (428)
T ss_pred CCEEEEeCCCccccC-----HHHHHHHHHHH--HhhCCceE-EEEEeccc---hHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 479999999975431 22222333332 23356644 55556653 467777777776444557788999997
Q ss_pred CCCcccHHHHhcCCccccccCEEEEE
Q 005389 228 MDRGTDARNLLLGKVIPLRLGYVGVV 253 (699)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~ 253 (699)
...+..+..+...-..| .-|+++-
T Consensus 252 ~~~~G~~lsi~~~~~~P--I~fi~~G 275 (428)
T TIGR00959 252 DARGGAALSVRSVTGKP--IKFIGVG 275 (428)
T ss_pred cccccHHHHHHHHHCcC--EEEEeCC
Confidence 66555454443322223 3455553
No 358
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.73 E-value=0.009 Score=75.22 Aligned_cols=51 Identities=27% Similarity=0.481 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHHHHhC------CCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccc
Q 005389 24 SVIPLVNKLQDIFAQLG------SQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (699)
Q Consensus 24 ~l~~~~~~L~d~~~~lg------~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~ 76 (699)
++-.+-.++.+.+..|. .....+||=.+|+|+++|||||+|+.- |.+| |-.
T Consensus 82 ~~~~l~~~~~~a~~~Lk~~~~~~~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~ 138 (1169)
T TIGR03348 82 EIRELRARFNEALALLKRSRLGGRRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLA 138 (1169)
T ss_pred HHHHHHHHHHHHHHHHhhccccCchhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCc
Confidence 34444445554444442 112358999999999999999999997 8775 554
No 359
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.65 E-value=0.0022 Score=68.28 Aligned_cols=68 Identities=25% Similarity=0.430 Sum_probs=43.0
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCC--cccchHHHHHHHhhCCCCCcEEEeecccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS--DLANSDALQIAGIADPDGYRTIGIITKLD 226 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~--d~~~~~~l~l~~~~dp~g~rti~VlTK~D 226 (699)
-+||+|+.|-.+-- .. .+..+ ..| .|++..|+|. |+. .+++.+-+-++..++ .|.++++||+|
T Consensus 250 lvTfiDLAGh~kY~----~T----Ti~gL-tgY--~Ph~A~LvVs-A~~Gi~~tTrEHLgl~~AL~---iPfFvlvtK~D 314 (591)
T KOG1143|consen 250 LVTFIDLAGHAKYQ----KT----TIHGL-TGY--TPHFACLVVS-ADRGITWTTREHLGLIAALN---IPFFVLVTKMD 314 (591)
T ss_pred eEEEeecccchhhh----ee----eeeec-ccC--CCceEEEEEE-cCCCCccccHHHHHHHHHhC---CCeEEEEEeec
Confidence 38999999954320 00 01111 123 3555555554 443 456667788888776 79999999999
Q ss_pred cCCCc
Q 005389 227 IMDRG 231 (699)
Q Consensus 227 ~~~~~ 231 (699)
+.++.
T Consensus 315 l~~~~ 319 (591)
T KOG1143|consen 315 LVDRQ 319 (591)
T ss_pred cccch
Confidence 99874
No 360
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.59 E-value=0.002 Score=69.53 Aligned_cols=31 Identities=35% Similarity=0.464 Sum_probs=27.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~ 78 (699)
-++.|||-+|+|||||||+|..+...++|..
T Consensus 253 IrvGViG~PNVGKSSvINsL~~~k~C~vg~~ 283 (435)
T KOG2484|consen 253 IRVGIIGYPNVGKSSVINSLKRRKACNVGNV 283 (435)
T ss_pred eEeeeecCCCCChhHHHHHHHHhccccCCCC
Confidence 3689999999999999999999988777764
No 361
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.01 Score=61.68 Aligned_cols=129 Identities=17% Similarity=0.298 Sum_probs=80.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
.|..+|...-||+||--||++.= .-.+ +..+.+++++...-++
T Consensus 14 NigtiGHvdHGKTTLtaAit~~l-a~~~-----------------------------~~~~~~y~~id~aPeE------- 56 (394)
T COG0050 14 NVGTIGHVDHGKTTLTAAITTVL-AKKG-----------------------------GAEAKAYDQIDNAPEE------- 56 (394)
T ss_pred EEEEeccccCchhhHHHHHHHHH-Hhhc-----------------------------cccccchhhhccCchH-------
Confidence 58899999999999999998651 1000 1112233333211111
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCccc-chHHHHH
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA-NSDALQI 207 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~-~~~~l~l 207 (699)
...+++-+.-+++....+ .....||.||-. .-+++|+....+ .|..||+|..+..... +.+-+-+
T Consensus 57 k~rGITIntahveyet~~-rhyahVDcPGHa------------DYvKNMItgAaq-mDgAILVVsA~dGpmPqTrEHiLl 122 (394)
T COG0050 57 KARGITINTAHVEYETAN-RHYAHVDCPGHA------------DYVKNMITGAAQ-MDGAILVVAATDGPMPQTREHILL 122 (394)
T ss_pred hhcCceeccceeEEecCC-ceEEeccCCChH------------HHHHHHhhhHHh-cCccEEEEEcCCCCCCcchhhhhh
Confidence 124555555566666554 368999999943 366777766544 5568888876664432 3344556
Q ss_pred HHhhCCCCCcEEEeecccccCCC
Q 005389 208 AGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 208 ~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
++++.- .++++++||+|+++.
T Consensus 123 arqvGv--p~ivvflnK~Dmvdd 143 (394)
T COG0050 123 ARQVGV--PYIVVFLNKVDMVDD 143 (394)
T ss_pred hhhcCC--cEEEEEEecccccCc
Confidence 777742 478888999999974
No 362
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.59 E-value=0.0049 Score=64.70 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.-+++.|||-+|+|||||||++-..
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~ 166 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNV 166 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHH
Confidence 4678999999999999999998544
No 363
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.40 E-value=0.011 Score=62.53 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-...-|.|+|.+||||||||+.|++.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35677999999999999999999876
No 364
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.0056 Score=58.95 Aligned_cols=69 Identities=14% Similarity=0.294 Sum_probs=46.6
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCC-CcccchHH--HHHHHhhCCCCCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN-SDLANSDA--LQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~-~d~~~~~~--l~l~~~~dp~g~rti~VlTK~ 225 (699)
.+.+||+-| ++..+++...|...+|.||.+|.+.+ ..+..+.. ..+...=.-.|.+.++.+||-
T Consensus 70 ~l~fwdlgG-------------Qe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankq 136 (197)
T KOG0076|consen 70 PLSFWDLGG-------------QESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQ 136 (197)
T ss_pred eeEEEEcCC-------------hHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchh
Confidence 699999999 56788999999999996665554433 12222211 223333334589999999999
Q ss_pred ccCCC
Q 005389 226 DIMDR 230 (699)
Q Consensus 226 D~~~~ 230 (699)
|+-+.
T Consensus 137 d~q~~ 141 (197)
T KOG0076|consen 137 DLQNA 141 (197)
T ss_pred hhhhh
Confidence 98654
No 365
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.40 E-value=0.012 Score=64.56 Aligned_cols=76 Identities=26% Similarity=0.230 Sum_probs=51.8
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHH-HHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMI-MSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv-~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D 226 (699)
.++.||||.|=.... + +.+.++. .+-+-+|+ =+|+|+||. .-+++...|+.++..-.=|=+|+||.|
T Consensus 183 ~DvvIvDTAGRl~id-----e---~Lm~El~~Ik~~~~P~-E~llVvDam---~GQdA~~~A~aF~e~l~itGvIlTKlD 250 (451)
T COG0541 183 YDVVIVDTAGRLHID-----E---ELMDELKEIKEVINPD-ETLLVVDAM---IGQDAVNTAKAFNEALGITGVILTKLD 250 (451)
T ss_pred CCEEEEeCCCccccc-----H---HHHHHHHHHHhhcCCC-eEEEEEecc---cchHHHHHHHHHhhhcCCceEEEEccc
Confidence 479999999965431 2 2333432 13445777 455555554 457888899999887777889999999
Q ss_pred cCCCcccHH
Q 005389 227 IMDRGTDAR 235 (699)
Q Consensus 227 ~~~~~~~~~ 235 (699)
--..|--+.
T Consensus 251 GdaRGGaAL 259 (451)
T COG0541 251 GDARGGAAL 259 (451)
T ss_pred CCCcchHHH
Confidence 987766553
No 366
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.31 E-value=0.0029 Score=64.56 Aligned_cols=28 Identities=36% Similarity=0.410 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~ 77 (699)
++-+||=+|+||||++..|+|.. -|+.+
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~-s~vas 88 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTF-SEVAA 88 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCC-Ccccc
Confidence 67789999999999999999984 34444
No 367
>PRK01889 GTPase RsgA; Reviewed
Probab=96.24 E-value=0.0082 Score=65.79 Aligned_cols=24 Identities=42% Similarity=0.747 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
.++++|.+|+|||||+|+|+|..-
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcc
Confidence 699999999999999999999753
No 368
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.078 Score=56.38 Aligned_cols=68 Identities=26% Similarity=0.383 Sum_probs=44.1
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCC--eeEEEEecCCCcccchHHHHH--HHhhCCCCCcEEEeec
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPS--CLILAVTPANSDLANSDALQI--AGIADPDGYRTIGIIT 223 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~--~iIL~V~~a~~d~~~~~~l~l--~~~~dp~g~rti~VlT 223 (699)
..++|||-||-. ..+|.+ |..+. ++.++|+|+.....++.|..+ ...+ ..+.++|+|
T Consensus 70 lq~tlvDCPGHa------------sLIRti----iggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~---c~klvvvin 130 (522)
T KOG0461|consen 70 LQFTLVDCPGHA------------SLIRTI----IGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL---CKKLVVVIN 130 (522)
T ss_pred ceeEEEeCCCcH------------HHHHHH----HhhhheeeeeeEEEehhcccccccchhhhhhhhh---ccceEEEEe
Confidence 468999999943 133333 33332 255667888877777665433 3333 467899999
Q ss_pred ccccCCCcccH
Q 005389 224 KLDIMDRGTDA 234 (699)
Q Consensus 224 K~D~~~~~~~~ 234 (699)
|+|...++..+
T Consensus 131 kid~lpE~qr~ 141 (522)
T KOG0461|consen 131 KIDVLPENQRA 141 (522)
T ss_pred ccccccchhhh
Confidence 99999876543
No 369
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=96.14 E-value=0.019 Score=63.29 Aligned_cols=132 Identities=14% Similarity=0.235 Sum_probs=73.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
....+|..---|||||-..|+... |..+. .+.++..-..++..-
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t------~~~~~------------------------------Rem~~Q~LDsMdiER 53 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELT------GGLSE------------------------------REMRAQVLDSMDIER 53 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHh------cCcCh------------------------------HHHHHHhhhhhhhHh
Confidence 346777888899999999997552 11010 112222222222211
Q ss_pred CCCCCccccceEEEEecC--CccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 128 GGNKGVSDKQIRLKIFSP--HVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p--~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
..+..+-...+++..... ....|.||||||-.+-+ --+.+.+..+...+|+ ++|.+....+..-
T Consensus 54 ERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs-------------YEVSRSLAACEGalLv-VDAsQGveAQTlA 119 (603)
T COG0481 54 ERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS-------------YEVSRSLAACEGALLV-VDASQGVEAQTLA 119 (603)
T ss_pred hcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE-------------EEehhhHhhCCCcEEE-EECccchHHHHHH
Confidence 222333344445554443 33579999999975432 1122345555555555 4677777655533
Q ss_pred HHHHhhCCCCCcEEEeecccccCCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
..-..++ .+.-+|-|+||+|+-..
T Consensus 120 N~YlAle-~~LeIiPViNKIDLP~A 143 (603)
T COG0481 120 NVYLALE-NNLEIIPVLNKIDLPAA 143 (603)
T ss_pred HHHHHHH-cCcEEEEeeecccCCCC
Confidence 3333333 45789999999999654
No 370
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.13 E-value=0.019 Score=54.92 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCC
Q 005389 174 IRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 174 i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
++++...++++++ ++++|+++.......+ ..+.+.+...+.+.++|+||+|+.+
T Consensus 2 ~~~~~~~i~~~aD-~vl~V~D~~~~~~~~~-~~l~~~~~~~~~p~iiv~NK~Dl~~ 55 (156)
T cd01859 2 WKRLVRRIIKESD-VVLEVLDARDPELTRS-RKLERYVLELGKKLLIVLNKADLVP 55 (156)
T ss_pred HHHHHHHHHhhCC-EEEEEeeCCCCcccCC-HHHHHHHHhCCCcEEEEEEhHHhCC
Confidence 4677778888888 7777777765443333 3444444445789999999999864
No 371
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.062 Score=57.12 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=23.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-+.-.|.|+|.||+|||+||+.|.+..
T Consensus 186 tdf~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHhccC
Confidence 466679999999999999999998874
No 372
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=96.11 E-value=0.006 Score=68.72 Aligned_cols=87 Identities=22% Similarity=0.223 Sum_probs=50.6
Q ss_pred CCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-------c--cc
Q 005389 131 KGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-------L--AN 201 (699)
Q Consensus 131 ~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-------~--~~ 201 (699)
.||+-++-...+. ++-..+||+|.||.- .++.+|+.. +..+|..||+| +|+.+ . .+
T Consensus 239 rGvTm~v~~~~fe-s~~~~~tliDaPGhk------------dFi~nmi~g-~sqaD~avLvv-d~s~~~FE~gfd~~gQt 303 (603)
T KOG0458|consen 239 RGVTMDVKTTWFE-SKSKIVTLIDAPGHK------------DFIPNMISG-ASQADVAVLVV-DASTGEFESGFDPGGQT 303 (603)
T ss_pred cceeEEeeeEEEe-cCceeEEEecCCCcc------------ccchhhhcc-ccccceEEEEE-ECCcchhhhccCCCCch
Confidence 4555555555555 444689999999942 144455543 34566566655 44432 1 12
Q ss_pred hHHHHHHHhhCCCCCcEEEeecccccCCCcccH
Q 005389 202 SDALQIAGIADPDGYRTIGIITKLDIMDRGTDA 234 (699)
Q Consensus 202 ~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~ 234 (699)
.+...+++.+. -...|+++||+|+++=..+.
T Consensus 304 rEha~llr~Lg--i~qlivaiNKmD~V~Wsq~R 334 (603)
T KOG0458|consen 304 REHALLLRSLG--ISQLIVAINKMDLVSWSQDR 334 (603)
T ss_pred HHHHHHHHHcC--cceEEEEeecccccCccHHH
Confidence 22234455543 36789999999999654443
No 373
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=96.01 E-value=0.006 Score=60.68 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~ 77 (699)
.+||||+-.+||++||-..+-..| |...
T Consensus 6 K~VvVGDga~GKT~ll~~~t~~~f-p~~y 33 (198)
T KOG0393|consen 6 KCVVVGDGAVGKTCLLISYTTNAF-PEEY 33 (198)
T ss_pred EEEEECCCCcCceEEEEEeccCcC-cccc
Confidence 589999999999999988876543 4443
No 374
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.00 E-value=0.029 Score=59.89 Aligned_cols=151 Identities=20% Similarity=0.247 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
.+-+++-+|+.--||||||-.|+--.- ...+=++..-.+... .+..+-...||.-+.+-++++-+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk----------~i~eDQla~l~~dS~----~~~t~g~~~D~ALLvDGL~AERE- 69 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTK----------AIYEDQLASLERDSK----RKGTQGEKIDLALLVDGLEAERE- 69 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcch----------hhhHHHHHHHhcccc----cccCCCCccchhhhhhhhHHHHh-
Confidence 567899999999999999988874321 111101000000000 00001123455555544444432
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
.|++-++..- .++-.-..+.+.||||- ++..|+|+... ..++..|| +++|...+..+.-.
T Consensus 70 -----QGITIDVAYR-yFsT~KRkFIiADTPGH------------eQYTRNMaTGA-STadlAIl-LVDAR~Gvl~QTrR 129 (431)
T COG2895 70 -----QGITIDVAYR-YFSTEKRKFIIADTPGH------------EQYTRNMATGA-STADLAIL-LVDARKGVLEQTRR 129 (431)
T ss_pred -----cCceEEEEee-ecccccceEEEecCCcH------------HHHhhhhhccc-ccccEEEE-EEecchhhHHHhHH
Confidence 4555444333 33333458999999993 23456665432 23453444 45777766555432
Q ss_pred --HHHHhhCCCC-CcEEEeecccccCCCcccH
Q 005389 206 --QIAGIADPDG-YRTIGIITKLDIMDRGTDA 234 (699)
Q Consensus 206 --~l~~~~dp~g-~rti~VlTK~D~~~~~~~~ 234 (699)
.++..+ | +.+++.+||+|+++-.++.
T Consensus 130 Hs~I~sLL---GIrhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 130 HSFIASLL---GIRHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred HHHHHHHh---CCcEEEEEEeeecccccCHHH
Confidence 122222 4 4566778999999866543
No 375
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.062 Score=51.61 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=76.9
Q ss_pred HHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCcccc
Q 005389 31 KLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFY 110 (699)
Q Consensus 31 ~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~ 110 (699)
...++|+-+|+- =.--.++++|--||||+|||+.|=.... +.-.+|--|+ + + .
T Consensus 6 wF~~VLq~LgL~--kK~gKllFlGLDNAGKTTLLHMLKdDrl---~qhvPTlHPT-------S---E---~--------- 58 (193)
T KOG0077|consen 6 WFSSVLQFLGLY--KKFGKLLFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPT-------S---E---E--------- 58 (193)
T ss_pred HHHHHHHHHHHh--ccCceEEEEeecCCchhhHHHHHccccc---cccCCCcCCC-------h---H---H---------
Confidence 345667777742 2334699999999999999999954432 2222232221 0 0 0
Q ss_pred ChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEE
Q 005389 111 DFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLIL 190 (699)
Q Consensus 111 d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL 190 (699)
+.|- ....+-+|+-|- .+.+.....|+...++|+.
T Consensus 59 -----------------------------l~Ig---~m~ftt~DLGGH-------------~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 59 -----------------------------LSIG---GMTFTTFDLGGH-------------LQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred -----------------------------heec---CceEEEEccccH-------------HHHHHHHHHHHhhhceeEe
Confidence 0010 125788999993 4677888899999997776
Q ss_pred EEecCCCcccchHH---HHHH-HhhCCCCCcEEEeecccccCCCcc
Q 005389 191 AVTPANSDLANSDA---LQIA-GIADPDGYRTIGIITKLDIMDRGT 232 (699)
Q Consensus 191 ~V~~a~~d~~~~~~---l~l~-~~~dp~g~rti~VlTK~D~~~~~~ 232 (699)
.|..+... .-+++ ++.. ....-...+.++..||+|.-....
T Consensus 94 lvda~d~e-r~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~s 138 (193)
T KOG0077|consen 94 LVDAYDQE-RFAESKKELDALLSDESLATVPFLILGNKIDIPYAAS 138 (193)
T ss_pred eeehhhHH-HhHHHHHHHHHHHhHHHHhcCcceeecccccCCCccc
Confidence 66554432 11111 1111 111112578999999999975543
No 376
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.88 E-value=0.078 Score=56.03 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeecc
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQT 92 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~ 92 (699)
.|.+||..--|||||..||+|.-. -+- .--.++-+.+.|-+.
T Consensus 12 NIG~vGHVdHGKtTlv~AlsGvwT-~~h-seElkRgitIkLGYA 53 (415)
T COG5257 12 NIGMVGHVDHGKTTLTKALSGVWT-DRH-SEELKRGITIKLGYA 53 (415)
T ss_pred Eeeeeeecccchhhheehhhceee-ech-hHHHhcCcEEEeccc
Confidence 378899999999999999999742 111 112345555555443
No 377
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.85 E-value=0.013 Score=63.10 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=22.8
Q ss_pred CCCCE--EEEEcCCCCcHHHHHHHHhCCCC
Q 005389 45 IELPQ--VAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 45 ~~lP~--IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
.+-+| |.+||.+|+||||+||+|-...+
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhccc
Confidence 34444 57799999999999999987765
No 378
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=0.038 Score=59.69 Aligned_cols=75 Identities=31% Similarity=0.238 Sum_probs=46.6
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHH--HHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMI--MSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv--~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~ 225 (699)
.+++||||-|-.+. .. ..+.+|. .+.+. |+ -|++|+||+..-+ +...++.+...-.-+-+++||+
T Consensus 184 fdvIIvDTSGRh~q-----e~---sLfeEM~~v~~ai~-Pd-~vi~VmDasiGQa---ae~Qa~aFk~~vdvg~vIlTKl 250 (483)
T KOG0780|consen 184 FDVIIVDTSGRHKQ-----EA---SLFEEMKQVSKAIK-PD-EIIFVMDASIGQA---AEAQARAFKETVDVGAVILTKL 250 (483)
T ss_pred CcEEEEeCCCchhh-----hH---HHHHHHHHHHhhcC-CC-eEEEEEeccccHh---HHHHHHHHHHhhccceEEEEec
Confidence 47999999995432 22 3444442 33444 65 6777788876543 3444555544444567889999
Q ss_pred ccCCCcccHH
Q 005389 226 DIMDRGTDAR 235 (699)
Q Consensus 226 D~~~~~~~~~ 235 (699)
|-...|-.+.
T Consensus 251 DGhakGGgAl 260 (483)
T KOG0780|consen 251 DGHAKGGGAL 260 (483)
T ss_pred ccCCCCCcee
Confidence 9988766543
No 379
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=95.53 E-value=0.016 Score=64.61 Aligned_cols=36 Identities=44% Similarity=0.652 Sum_probs=30.1
Q ss_pred HHhCCC-CCCCCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 37 AQLGSQ-STIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 37 ~~lg~~-~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
..+|.. ..++.--|+|+|+||+|||||||.|.|..|
T Consensus 26 q~vgl~d~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 26 QCVGLRDCGLSYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred HHhcccccCcceeEEEEecCcccchHHHHHHHhccCh
Confidence 345543 457888899999999999999999999876
No 380
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.34 E-value=0.23 Score=48.97 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.+||||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58999999999999999999974
No 381
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=95.32 E-value=0.024 Score=61.01 Aligned_cols=66 Identities=26% Similarity=0.304 Sum_probs=43.8
Q ss_pred eEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch--HHHHHHHhhCCCCCcEEEeeccccc
Q 005389 150 ITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 150 LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
+.||||-|-- ..++..++..+...-...|+|+.|+...... +-+-++-. .+.|+|+|+||+|+
T Consensus 203 VsfVDtvGHE------------pwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a---~~lPviVvvTK~D~ 267 (527)
T COG5258 203 VSFVDTVGHE------------PWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA---MELPVIVVVTKIDM 267 (527)
T ss_pred EEEEecCCcc------------HHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh---hcCCEEEEEEeccc
Confidence 7899999932 2445555555554444777888888765443 32333333 35899999999999
Q ss_pred CCC
Q 005389 228 MDR 230 (699)
Q Consensus 228 ~~~ 230 (699)
.+.
T Consensus 268 ~~d 270 (527)
T COG5258 268 VPD 270 (527)
T ss_pred CcH
Confidence 975
No 382
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=95.17 E-value=0.0088 Score=64.43 Aligned_cols=132 Identities=18% Similarity=0.228 Sum_probs=80.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
.|.|+...-+||+|+-+.|+-..-.-++.| . -..|...+||-.+.++
T Consensus 39 nigiiahidagktttterily~ag~~~s~g---------------------~--vddgdtvtdfla~ere---------- 85 (753)
T KOG0464|consen 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAG---------------------D--VDDGDTVTDFLAIERE---------- 85 (753)
T ss_pred cceeEEEecCCCchhHHHHHHHhhhhhccc---------------------c--cCCCchHHHHHHHHHh----------
Confidence 477888889999999999874321000111 0 0124555666555433
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHH
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIA 208 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~ 208 (699)
.|++-....+.+.|.. ..+.||||||-.+-. -+ +.+.++--+ -+++|.+++.....+. +..-
T Consensus 86 --rgitiqsaav~fdwkg-~rinlidtpghvdf~-----le--------verclrvld-gavav~dasagve~qt-ltvw 147 (753)
T KOG0464|consen 86 --RGITIQSAAVNFDWKG-HRINLIDTPGHVDFR-----LE--------VERCLRVLD-GAVAVFDASAGVEAQT-LTVW 147 (753)
T ss_pred --cCceeeeeeeeccccc-ceEeeecCCCcceEE-----EE--------HHHHHHHhc-CeEEEEeccCCcccce-eeee
Confidence 2333322333333332 368999999975432 11 222333333 4567777777666554 6677
Q ss_pred HhhCCCCCcEEEeecccccCCCc
Q 005389 209 GIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 209 ~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
++.|....+.++.+||+|.....
T Consensus 148 rqadk~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 148 RQADKFKIPAHCFINKMDKLAAN 170 (753)
T ss_pred hhccccCCchhhhhhhhhhhhhh
Confidence 88898899999999999998654
No 383
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.83 E-value=0.025 Score=55.40 Aligned_cols=28 Identities=32% Similarity=0.609 Sum_probs=24.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~ 77 (699)
+++|+|+.+||||||||-|.|... |.+.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~-P~~G 54 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET-PASG 54 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC-CCCc
Confidence 689999999999999999999864 6654
No 384
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.81 E-value=0.06 Score=51.61 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=33.3
Q ss_pred HHHhcCCCeeEEEEecCCCcccchH--HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 179 MSYIKQPSCLILAVTPANSDLANSD--ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 179 ~~yi~~~~~iIL~V~~a~~d~~~~~--~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+.+.++| +|++|+++.......+ ..+.++.. ..+.+.|+|+||+|++++
T Consensus 3 ~~~l~~aD-~il~VvD~~~p~~~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~ 54 (157)
T cd01858 3 YKVIDSSD-VVIQVLDARDPMGTRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPT 54 (157)
T ss_pred hHhhhhCC-EEEEEEECCCCccccCHHHHHHHHhc-cCCCCEEEEEEchhcCCH
Confidence 34567787 8888888877544322 23333332 235899999999999753
No 385
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=94.60 E-value=0.045 Score=65.62 Aligned_cols=24 Identities=50% Similarity=0.692 Sum_probs=20.7
Q ss_pred EcCCCCcHHHHHHHHhCCCCCcccC
Q 005389 53 VGSQSSGKSSVLEALVGRDFLPRGN 77 (699)
Q Consensus 53 vG~~ssGKSSLLnaL~G~~~lP~~~ 77 (699)
+|+||+|||||||.|.|..| ++..
T Consensus 1 ~g~qssgkstlln~lf~t~f-~~m~ 24 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF-DVMD 24 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc-cccc
Confidence 59999999999999999986 5533
No 386
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.58 E-value=0.036 Score=44.74 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 005389 49 QVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~ 68 (699)
..+|.|+.+|||||++.||.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999985
No 387
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=0.26 Score=46.27 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=47.5
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcc---cchHHHHHHHhhCCCCCcEEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL---ANSDALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~---~~~~~l~l~~~~dp~g~rti~VlTK 224 (699)
..+.++|+-|=+ .++-..+.|..+.+++|++|.+++.|- +..+...++++-.-.+...+++.||
T Consensus 62 Lk~~vwdLggqt-------------SirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anK 128 (182)
T KOG0072|consen 62 LKFQVWDLGGQT-------------SIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANK 128 (182)
T ss_pred ccceeeEccCcc-------------cccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEecc
Confidence 468999999854 345666789999998999888877542 2223233343333335778888999
Q ss_pred cccCCC
Q 005389 225 LDIMDR 230 (699)
Q Consensus 225 ~D~~~~ 230 (699)
.|....
T Consensus 129 qD~~~~ 134 (182)
T KOG0072|consen 129 QDYSGA 134 (182)
T ss_pred ccchhh
Confidence 998643
No 388
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.49 E-value=0.033 Score=56.82 Aligned_cols=56 Identities=20% Similarity=0.260 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCC-CcccchH-HHHHHHhhCCCCCcEEEeecccccC
Q 005389 172 ARIRTMIMSYIKQPSCLILAVTPAN-SDLANSD-ALQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 172 ~~i~~lv~~yi~~~~~iIL~V~~a~-~d~~~~~-~l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
.+--.+.+..+.+|. +||+--|.. -|..+.+ .+.+.+++......|++++|+=..+
T Consensus 148 qQRVAIARAL~~~P~-iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~l 205 (226)
T COG1136 148 QQRVAIARALINNPK-IILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPEL 205 (226)
T ss_pred HHHHHHHHHHhcCCC-eEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 444455556666775 888854433 3444443 3678888876667799999975444
No 389
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=94.45 E-value=0.35 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.+|-.+|.|--|||||||||.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 3688899999999999999999854
No 390
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.34 E-value=0.039 Score=51.96 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005389 50 VAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~ 70 (699)
|+|+|+++||||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999976
No 391
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=94.32 E-value=0.086 Score=61.27 Aligned_cols=130 Identities=22% Similarity=0.253 Sum_probs=73.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
....|.+|...--||+||..+|+-..- -+..|-+-.+ +|.|+-+-. .+..
T Consensus 8 ~irn~~~vahvdhgktsladsl~asng-----vis~rlagki--------------------rfld~rede-----q~rg 57 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNG-----VISSRLAGKI--------------------RFLDTREDE-----QTRG 57 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhcc-----Eechhhccce--------------------eeccccchh-----hhhc
Confidence 455689999999999999999975531 1111222111 233321110 0011
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
++-...++|. +.+ ..-+.|||+||-.+- ...+....+-+| .-|+.+|+..+...+. .
T Consensus 58 itmkss~is~------~~~--~~~~nlidspghvdf-------------~sevssas~l~d-~alvlvdvvegv~~qt-~ 114 (887)
T KOG0467|consen 58 ITMKSSAISL------LHK--DYLINLIDSPGHVDF-------------SSEVSSASRLSD-GALVLVDVVEGVCSQT-Y 114 (887)
T ss_pred eeeecccccc------ccC--ceEEEEecCCCccch-------------hhhhhhhhhhcC-CcEEEEeeccccchhH-H
Confidence 1112223331 111 135889999997533 222333334444 4444556666666554 6
Q ss_pred HHHHhhCCCCCcEEEeecccccC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
.++|++--.+.+.|.|+||+|.+
T Consensus 115 ~vlrq~~~~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 115 AVLRQAWIEGLKPILVINKIDRL 137 (887)
T ss_pred HHHHHHHHccCceEEEEehhhhH
Confidence 77887777789999999999953
No 392
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.30 E-value=0.034 Score=51.65 Aligned_cols=23 Identities=52% Similarity=0.697 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|..++||||||++|.|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 48999999999999999999984
No 393
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=94.20 E-value=0.16 Score=50.16 Aligned_cols=54 Identities=13% Similarity=0.077 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 173 RIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.++.++..|+++++ +||+|+|+........ ..+... ..+.++++|+||+|+.+.
T Consensus 23 ~~~~~l~~~~~~ad-~il~VvD~~~~~~~~~-~~l~~~--~~~~~~ilV~NK~Dl~~~ 76 (190)
T cd01855 23 FILNLLSSISPKKA-LVVHVVDIFDFPGSLI-PRLRLF--GGNNPVILVGNKIDLLPK 76 (190)
T ss_pred HHHHHHHhcccCCc-EEEEEEECccCCCccc-hhHHHh--cCCCcEEEEEEchhcCCC
Confidence 46888999999998 6777777654322211 222122 246899999999999754
No 394
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=94.20 E-value=0.3 Score=52.70 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.+|-.+|.|--|||||||||.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4688999999999999999999854
No 395
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=94.18 E-value=0.16 Score=48.48 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=29.1
Q ss_pred eEEEEecCCCcccchHHHHHH-HhhCCCCCcEEEeecccccCCC
Q 005389 188 LILAVTPANSDLANSDALQIA-GIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 188 iIL~V~~a~~d~~~~~~l~l~-~~~dp~g~rti~VlTK~D~~~~ 230 (699)
++|+|+++.......+ ..+. ..+...+.++|+|+||+|+.++
T Consensus 2 vvl~VvD~~~p~~~~~-~~i~~~~~~~~~~p~IiVlNK~Dl~~~ 44 (155)
T cd01849 2 VILEVLDARDPLGTRS-PDIERVLIKEKGKKLILVLNKADLVPK 44 (155)
T ss_pred EEEEEEeccCCccccC-HHHHHHHHhcCCCCEEEEEechhcCCH
Confidence 6788888876544433 2333 3455567999999999999753
No 396
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.15 E-value=0.039 Score=55.42 Aligned_cols=27 Identities=41% Similarity=0.647 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccc
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~ 76 (699)
-|.|+|..+||||||+|+|.|.- .|.+
T Consensus 34 FvtViGsNGAGKSTlln~iaG~l-~~t~ 60 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGDL-KPTS 60 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCcc-ccCC
Confidence 48999999999999999999983 3443
No 397
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.13 E-value=0.061 Score=57.45 Aligned_cols=78 Identities=26% Similarity=0.213 Sum_probs=49.8
Q ss_pred cceEEEeCCCCCCCCCCCCchHHH---HHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIE---ARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~---~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK 224 (699)
.++.|+||.|=-.+. .++- +.+...+...+..+..-+|+|.+|... ++++.-++.+...-.=+-+|+||
T Consensus 222 ~DvvliDTAGRLhnk-----~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG---qnal~QAk~F~eav~l~GiIlTK 293 (340)
T COG0552 222 IDVVLIDTAGRLHNK-----KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG---QNALSQAKIFNEAVGLDGIILTK 293 (340)
T ss_pred CCEEEEeCcccccCc-----hhHHHHHHHHHHHhccccCCCCceEEEEEEcccC---hhHHHHHHHHHHhcCCceEEEEe
Confidence 479999999965432 2222 244555555555444457777777643 45666666666555567889999
Q ss_pred cccCCCccc
Q 005389 225 LDIMDRGTD 233 (699)
Q Consensus 225 ~D~~~~~~~ 233 (699)
+|--..|--
T Consensus 294 lDgtAKGG~ 302 (340)
T COG0552 294 LDGTAKGGI 302 (340)
T ss_pred cccCCCcce
Confidence 997666543
No 398
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.01 E-value=0.15 Score=55.86 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-..++|+|||+..||||||...|+++
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHH
Confidence 35688999999999999998888755
No 399
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.97 E-value=0.42 Score=46.46 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=28.7
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEec
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTP 194 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~ 194 (699)
|.+.|.|-|--.-. ..-.+.+.+|+.+|.+..+..++||+.
T Consensus 152 P~ILLLDE~TsALD------~~nkr~ie~mi~~~v~~q~vAv~WiTH 192 (223)
T COG4619 152 PKILLLDEITSALD------ESNKRNIEEMIHRYVREQNVAVLWITH 192 (223)
T ss_pred CceEEecCchhhcC------hhhHHHHHHHHHHHhhhhceEEEEEec
Confidence 56788886642111 122457889999999988888999875
No 400
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.83 E-value=0.088 Score=55.85 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+++|++|+||||++..|...
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999765
No 401
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.70 E-value=0.041 Score=53.04 Aligned_cols=22 Identities=36% Similarity=0.773 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
+|+|+|..|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5999999999999999999755
No 402
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.68 E-value=0.051 Score=55.85 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-|++||+.|+|||||||.|.|..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999986
No 403
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=93.62 E-value=0.27 Score=47.88 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCC
Q 005389 173 RIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.+.+.+...+.++| +||+|+++.......+ ..+...+. +.++++|+||+|+.+
T Consensus 8 ~~~~~~~~~i~~aD-~il~v~D~~~~~~~~~-~~i~~~~~--~k~~ilVlNK~Dl~~ 60 (171)
T cd01856 8 KALRQIKEKLKLVD-LVIEVRDARIPLSSRN-PLLEKILG--NKPRIIVLNKADLAD 60 (171)
T ss_pred HHHHHHHHHHhhCC-EEEEEeeccCccCcCC-hhhHhHhc--CCCEEEEEehhhcCC
Confidence 34445578899998 8888888875544333 23344432 478999999999974
No 404
>PRK13695 putative NTPase; Provisional
Probab=93.58 E-value=0.85 Score=44.39 Aligned_cols=22 Identities=14% Similarity=0.418 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+++|.+++|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998765
No 405
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=93.58 E-value=0.17 Score=52.97 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
+--|.|+|.+-+|||.|+|.|+|.
T Consensus 21 v~vvsi~G~~rtGKSfLln~l~~~ 44 (260)
T PF02263_consen 21 VAVVSIVGPYRTGKSFLLNQLLGP 44 (260)
T ss_dssp EEEEEEEEETTSSHHHHHHHHCCB
T ss_pred EEEEEeecCCccchHHHHHHHhcc
Confidence 335788999999999999999985
No 406
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.54 E-value=0.07 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-|+|+|+.+||||||++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 3899999999999999999985
No 407
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.53 E-value=0.42 Score=48.74 Aligned_cols=69 Identities=22% Similarity=0.241 Sum_probs=36.7
Q ss_pred HhcCCCeeEEEEecCC-CcccchHH-HHHHHhhCCCCCcEEEeecccccCCCcccHHHHhcCCccccccCEEEEEcCChh
Q 005389 181 YIKQPSCLILAVTPAN-SDLANSDA-LQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQE 258 (699)
Q Consensus 181 yi~~~~~iIL~V~~a~-~d~~~~~~-l~l~~~~dp~g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~ 258 (699)
-++..| ++++|++.+ ..+.+++- .+|+.++. -+|+.+|+||+|-. .. .+......+.+-+.++.-.+++
T Consensus 152 ~~~~vD-~vivVvDpS~~sl~taeri~~L~~elg--~k~i~~V~NKv~e~--e~----~~~~~~~~~~~~vlg~iP~d~~ 222 (255)
T COG3640 152 TIEGVD-LVIVVVDPSYKSLRTAERIKELAEELG--IKRIFVVLNKVDEE--EE----LLRELAEELGLEVLGVIPYDPE 222 (255)
T ss_pred cccCCC-EEEEEeCCcHHHHHHHHHHHHHHHHhC--CceEEEEEeeccch--hH----HHHhhhhccCCeEEEEccCCHH
Confidence 345677 555555544 44444332 23444443 28999999999965 11 1222222344555666655443
No 408
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.52 E-value=0.061 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.++|+|+++|||||++++|+|.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3899999999999999999986
No 409
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.47 E-value=0.062 Score=50.85 Aligned_cols=23 Identities=39% Similarity=0.768 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
|.|.|||..++|||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999765
No 410
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.43 E-value=0.1 Score=49.05 Aligned_cols=52 Identities=10% Similarity=0.229 Sum_probs=35.5
Q ss_pred HHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCC--CCCcEEEeecccccCCC
Q 005389 177 MIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADP--DGYRTIGIITKLDIMDR 230 (699)
Q Consensus 177 lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp--~g~rti~VlTK~D~~~~ 230 (699)
.+.+.+.++| ++|+|+++.......+ ..+.+.+.. .+.+.++|+||+|+.++
T Consensus 4 ~~~~~i~~aD-~vl~ViD~~~p~~~~~-~~l~~~l~~~~~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 4 QLWRVVERSD-IVVQIVDARNPLLFRP-PDLERYVKEVDPRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHHHHhhCC-EEEEEEEccCCcccCC-HHHHHHHHhccCCCcEEEEEechhcCCH
Confidence 3567788888 7777778876655443 234444333 36899999999999753
No 411
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.42 E-value=0.051 Score=53.44 Aligned_cols=35 Identities=31% Similarity=0.498 Sum_probs=25.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCcccCCccccce
Q 005389 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p 84 (699)
|+|.|+.|+|||||+.+|+...-+--+...+||.|
T Consensus 7 ~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~p 41 (191)
T COG0194 7 IVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKP 41 (191)
T ss_pred EEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCC
Confidence 78899999999999999987753222333444443
No 412
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=93.38 E-value=0.34 Score=51.16 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=35.8
Q ss_pred HHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 176 TMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 176 ~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
..+.+.+..+| +||+|++|.......+ ..+.+.+. +++.|+|+||+|+.++
T Consensus 13 ~~~~~~l~~aD-vVl~V~Dar~p~~~~~-~~i~~~l~--~kp~IiVlNK~DL~~~ 63 (276)
T TIGR03596 13 REIKEKLKLVD-VVIEVLDARIPLSSRN-PMIDEIRG--NKPRLIVLNKADLADP 63 (276)
T ss_pred HHHHHHHhhCC-EEEEEEeCCCCCCCCC-hhHHHHHC--CCCEEEEEEccccCCH
Confidence 44567788888 8888888876555433 33444442 5899999999999753
No 413
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.30 E-value=0.074 Score=51.66 Aligned_cols=29 Identities=31% Similarity=0.607 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCc
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~ 79 (699)
-+.|||..+|||||||++|.++ ++-..|.
T Consensus 34 VLgiVGESGSGKtTLL~~is~r--l~p~~G~ 62 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGR--LTPDAGT 62 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcc--cCCCCCe
Confidence 5789999999999999999998 3444443
No 414
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.22 E-value=0.078 Score=53.33 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999973
No 415
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.19 E-value=0.074 Score=53.17 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-CCcccCCccccce
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD-FLPRGNDICTRRP 84 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~-~lP~~~~~~Tr~p 84 (699)
-|+|+|.++||||||++.|.+.. -+......+||.|
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p 43 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP 43 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC
Confidence 48999999999999999999862 1122233455555
No 416
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=93.18 E-value=0.74 Score=49.58 Aligned_cols=39 Identities=28% Similarity=0.355 Sum_probs=28.9
Q ss_pred HHHHHHHhCCC---CCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 32 LQDIFAQLGSQ---STIELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 32 L~d~~~~lg~~---~~~~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
|+-.|...+.+ +.-..|+++|||+.++|||||...|+..
T Consensus 85 lH~ale~~R~~~e~~~~~GPrv~vVGp~d~GKsTl~r~L~ny 126 (415)
T KOG2749|consen 85 LHAALEKRRMQAEEESSYGPRVMVVGPTDVGKSTLCRILLNY 126 (415)
T ss_pred HHHHHHHHhhhhhhhhccCCEEEEECCCccchHHHHHHHHHH
Confidence 44444444433 3456999999999999999999999754
No 417
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.07 E-value=0.08 Score=54.28 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 418
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.06 E-value=0.085 Score=52.98 Aligned_cols=27 Identities=37% Similarity=0.708 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccc
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~ 76 (699)
.++|+|+.+|||||||.+|+|. +.|.+
T Consensus 29 v~ailGPNGAGKSTlLk~LsGe-l~p~~ 55 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGE-LSPDS 55 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCc-cCCCC
Confidence 5899999999999999999998 44443
No 419
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.01 E-value=0.083 Score=53.40 Aligned_cols=22 Identities=50% Similarity=0.667 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.++|+|+.|||||||+++|.|.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5899999999999999999997
No 420
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=92.91 E-value=0.21 Score=53.63 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=44.5
Q ss_pred EEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcc--cchHHHHHHHhhCCCCCc
Q 005389 140 LKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL--ANSDALQIAGIADPDGYR 217 (699)
Q Consensus 140 l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~--~~~~~l~l~~~~dp~g~r 217 (699)
++|+.....-+||||+.|-.+ .++..+...-.+....-++.+-||..+ .+.+-+-+|-.+ ..+
T Consensus 211 vkIce~saKviTFIDLAGHEk------------YLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL---~VP 275 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEK------------YLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALAL---HVP 275 (641)
T ss_pred eeeccccceeEEEEeccchhh------------hhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhh---cCc
Confidence 445554445689999999431 122222222223333555556666543 334445565555 379
Q ss_pred EEEeecccccCCC
Q 005389 218 TIGIITKLDIMDR 230 (699)
Q Consensus 218 ti~VlTK~D~~~~ 230 (699)
+++|+||+|....
T Consensus 276 VfvVVTKIDMCPA 288 (641)
T KOG0463|consen 276 VFVVVTKIDMCPA 288 (641)
T ss_pred EEEEEEeeccCcH
Confidence 9999999999865
No 421
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=92.80 E-value=0.18 Score=39.94 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=30.5
Q ss_pred HHHHhcCCCeeEEEEecCC--CcccchHHHHHHHhhCCC--CCcEEEeecccc
Q 005389 178 IMSYIKQPSCLILAVTPAN--SDLANSDALQIAGIADPD--GYRTIGIITKLD 226 (699)
Q Consensus 178 v~~yi~~~~~iIL~V~~a~--~d~~~~~~l~l~~~~dp~--g~rti~VlTK~D 226 (699)
....+++-.+.||+++|.+ .+.+-.+-+.+.+++.+. +.|.+.|+||+|
T Consensus 6 ai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 3345565567888888776 345555556777777665 699999999998
No 422
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.74 E-value=0.12 Score=51.46 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-|+|+|+.|||||||++.|+..
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4889999999999999999875
No 423
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.65 E-value=0.1 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999984
No 424
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=92.64 E-value=1.7 Score=43.44 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 005389 49 QVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~ 68 (699)
.++++|+.++|||||+..|.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 49999999999999999988
No 425
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.64 E-value=0.11 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|..|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 426
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.63 E-value=0.11 Score=51.63 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|..|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999974
No 427
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=92.62 E-value=0.11 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-++++|..+|||||+|++|+|.-
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999983
No 428
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.57 E-value=0.095 Score=49.68 Aligned_cols=23 Identities=30% Similarity=0.640 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|..++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 46899999999999999999974
No 429
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.53 E-value=0.095 Score=51.85 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 430
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.52 E-value=0.1 Score=56.93 Aligned_cols=30 Identities=20% Similarity=0.472 Sum_probs=24.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~ 79 (699)
-.|+|+|.+||||||++++|++. +|....+
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~--i~~~~ri 192 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISA--IPPQERL 192 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcc--cCCCCCE
Confidence 34999999999999999999986 3554443
No 431
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.51 E-value=0.12 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|..++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999984
No 432
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.49 E-value=0.1 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~ 68 (699)
+.|.|+|+|.+||||||+.+.|.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999999998
No 433
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=92.49 E-value=0.11 Score=53.35 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|..
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 434
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.44 E-value=0.12 Score=52.78 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|.-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999983
No 435
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=92.43 E-value=0.6 Score=50.46 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.|-.+|-|-=|||||||||.|+-..
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~ 25 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANR 25 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhcc
Confidence 4778888999999999999998764
No 436
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=92.38 E-value=0.12 Score=47.71 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=51.8
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCC-cccc-hHHHHHHHhhCCCCCcEEEeecccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS-DLAN-SDALQIAGIADPDGYRTIGIITKLD 226 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~-d~~~-~~~l~l~~~~dp~g~rti~VlTK~D 226 (699)
.|.+|||.| ++.++..+..|.+.+++++|+..-+|. .+.| +.++.-+.++.........+-||+|
T Consensus 48 klqiwdtag-------------qerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d 114 (192)
T KOG0083|consen 48 KLQIWDTAG-------------QERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCD 114 (192)
T ss_pred EEEEeeccc-------------hHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccc
Confidence 689999999 678999999999999988877655553 2333 3345556666666677888999999
Q ss_pred cCCC
Q 005389 227 IMDR 230 (699)
Q Consensus 227 ~~~~ 230 (699)
+..+
T Consensus 115 ~a~e 118 (192)
T KOG0083|consen 115 LAHE 118 (192)
T ss_pred cchh
Confidence 9753
No 437
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=92.37 E-value=0.52 Score=50.09 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 175 RTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 175 ~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
...+.+.+..+| +||+|+|+...+...+ ..+.+.+. +++.++|+||+|+.+.
T Consensus 15 ~~~l~~~l~~aD-vIL~VvDar~p~~~~~-~~l~~~~~--~kp~iiVlNK~DL~~~ 66 (287)
T PRK09563 15 RREIKENLKLVD-VVIEVLDARIPLSSEN-PMIDKIIG--NKPRLLILNKSDLADP 66 (287)
T ss_pred HHHHHHHhhhCC-EEEEEEECCCCCCCCC-hhHHHHhC--CCCEEEEEEchhcCCH
Confidence 344567788888 8888888876655443 23333332 6899999999999753
No 438
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.34 E-value=0.1 Score=52.74 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-.++++|+.|||||||++.|.|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999973
No 439
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.33 E-value=0.75 Score=48.87 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=51.5
Q ss_pred eEEEeCCCCCCC-C---CCCCchHHHHHHHHHHHHHhcCCCeeEEE--EecCCCcccchHHHHHHHhhCCCCCcEEEeec
Q 005389 150 ITLVDLPGITKV-P---VGEQPADIEARIRTMIMSYIKQPSCLILA--VTPANSDLANSDALQIAGIADPDGYRTIGIIT 223 (699)
Q Consensus 150 LtLVDlPGl~~~-~---~~~q~~di~~~i~~lv~~yi~~~~~iIL~--V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlT 223 (699)
|.+|.++.-.+. | .++| ++.-.+.+....+|. |+|+ .++|-+.-+++..+.+++.+.....=||+.+|
T Consensus 126 LelVgL~dk~~~yP~qLSGGQ-----KQRVaIARALa~~P~-iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlIT 199 (339)
T COG1135 126 LELVGLSDKADRYPAQLSGGQ-----KQRVAIARALANNPK-ILLCDEATSALDPETTQSILELLKDINRELGLTIVLIT 199 (339)
T ss_pred HHHcCChhhhccCchhcCcch-----hhHHHHHHHHhcCCC-EEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 456666654322 1 2444 343444445555665 7776 34444556677778999999888778899888
Q ss_pred ccccCCCcccHHHHhcCCccccccCEEE
Q 005389 224 KLDIMDRGTDARNLLLGKVIPLRLGYVG 251 (699)
Q Consensus 224 K~D~~~~~~~~~~~l~~~~~~l~lG~~~ 251 (699)
+= -+..+-+.+++.-+..|-+.
T Consensus 200 HE------m~Vvk~ic~rVavm~~G~lv 221 (339)
T COG1135 200 HE------MEVVKRICDRVAVLDQGRLV 221 (339)
T ss_pred ch------HHHHHHHhhhheEeeCCEEE
Confidence 51 12223344444445555543
No 440
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.27 E-value=0.11 Score=52.39 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.++++|+.|||||||++.|.|.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999997
No 441
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.26 E-value=0.11 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 442
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.24 E-value=0.11 Score=51.10 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005389 49 QVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G 69 (699)
.++|+|+.+|||||||++|++
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999999963
No 443
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.23 E-value=0.11 Score=52.75 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.++++|..|||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999997
No 444
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.21 E-value=0.14 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.++|||||+++|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 48999999999999999999983
No 445
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.18 E-value=0.13 Score=53.46 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-++++|+.||||||||.+|.|.
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3899999999999999999996
No 446
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.17 E-value=0.11 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999973
No 447
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.16 E-value=0.11 Score=52.17 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999973
No 448
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.11 E-value=0.11 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.+|||||||+.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999973
No 449
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=92.10 E-value=0.13 Score=52.84 Aligned_cols=23 Identities=43% Similarity=0.483 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|..|||||||+++|.|..
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccC
Confidence 58999999999999999999983
No 450
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.06 E-value=2.7 Score=41.98 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.++||||||.+|.+..
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHHH
Confidence 68999999999999999998543
No 451
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.05 E-value=0.13 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999973
No 452
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=92.04 E-value=0.14 Score=52.61 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.++|+|+.|||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999997
No 453
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.04 E-value=0.14 Score=50.81 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.++|||||++.|.|..
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999974
No 454
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.01 E-value=0.15 Score=50.95 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-.++|+|..|+|||||++.|.|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999974
No 455
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.99 E-value=0.16 Score=48.64 Aligned_cols=29 Identities=38% Similarity=0.492 Sum_probs=24.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~ 78 (699)
..++|+|+.++|||||+++|.|.- +...|
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~~~~G 54 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--KPTSG 54 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCcc
Confidence 468899999999999999999973 33444
No 456
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.98 E-value=0.15 Score=51.65 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~ 78 (699)
.++|+|..++|||||++.|.|.. |...|
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G 66 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL--HVESG 66 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCCe
Confidence 58899999999999999999973 44444
No 457
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.98 E-value=0.12 Score=52.41 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999973
No 458
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.97 E-value=0.12 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||+++|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999973
No 459
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.96 E-value=0.14 Score=52.80 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.++|+|+.|||||||++.|+|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999997
No 460
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.93 E-value=0.12 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|..|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999973
No 461
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.93 E-value=0.16 Score=51.22 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCCeeEEE--EecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCcccHHHHhcCCccccccCEE
Q 005389 173 RIRTMIMSYIKQPSCLILA--VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYV 250 (699)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~--V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~ 250 (699)
+--.+.+...-+|+ ++|+ .++|-......+.+...+.+...| -|++|+|+= -.-..-..++++.+..|.+
T Consensus 143 QRVAIARALaM~P~-vmLFDEPTSALDPElv~EVL~vm~~LA~eG-mTMivVTHE------M~FAr~VadrviFmd~G~i 214 (240)
T COG1126 143 QRVAIARALAMDPK-VMLFDEPTSALDPELVGEVLDVMKDLAEEG-MTMIIVTHE------MGFAREVADRVIFMDQGKI 214 (240)
T ss_pred HHHHHHHHHcCCCC-EEeecCCcccCCHHHHHHHHHHHHHHHHcC-CeEEEEech------hHHHHHhhheEEEeeCCEE
Confidence 33344444445776 7777 455555556667788888888776 677777741 1112234556677777766
Q ss_pred EEEc
Q 005389 251 GVVN 254 (699)
Q Consensus 251 ~V~n 254 (699)
..-.
T Consensus 215 ie~g 218 (240)
T COG1126 215 IEEG 218 (240)
T ss_pred EEec
Confidence 5543
No 462
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.91 E-value=0.14 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-.++++|+.++|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999984
No 463
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=91.89 E-value=0.12 Score=52.67 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|..|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999999983
No 464
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.89 E-value=0.12 Score=51.91 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.++|+|..|||||||++.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999997
No 465
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=91.86 E-value=0.17 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|..++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 466
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=91.83 E-value=0.13 Score=50.84 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-|+|+|+.|||||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 38899999999999999998763
No 467
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=91.83 E-value=0.15 Score=51.21 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~ 78 (699)
.++|+|..++|||||+++|+|.. +...|
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G 63 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFL--EAEEG 63 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCC
Confidence 58999999999999999999973 44444
No 468
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.81 E-value=0.13 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|..|||||||++.|.|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 48899999999999999999973
No 469
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=91.79 E-value=0.18 Score=49.06 Aligned_cols=40 Identities=28% Similarity=0.493 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 28 ~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.+++|.+.+. ....-+.+-++|+|..|+|||+|++++...
T Consensus 8 e~~~l~~~l~---~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 8 EIERLRDLLD---AAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp HHHHHHHTTG---GTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3455555443 222345577999999999999999998754
No 470
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.79 E-value=0.16 Score=51.03 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.+||||||+..|.|..
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999984
No 471
>COG3910 Predicted ATPase [General function prediction only]
Probab=91.78 E-value=0.18 Score=49.75 Aligned_cols=44 Identities=34% Similarity=0.621 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHh-CCCCCcccC
Q 005389 27 PLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALV-GRDFLPRGN 77 (699)
Q Consensus 27 ~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~-G~~~lP~~~ 77 (699)
|++..|+. .| .+..|--+++|..++|||||||+|. |..+-+.|.
T Consensus 24 Pa~r~l~~---~L----eF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg 68 (233)
T COG3910 24 PAFRHLEE---RL----EFRAPITFITGENGSGKSTLLEAIAAGMGFNAAGG 68 (233)
T ss_pred hHHHhhhh---hc----cccCceEEEEcCCCccHHHHHHHHHhhccccccCC
Confidence 56666664 12 3667888999999999999999994 444445444
No 472
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=91.77 E-value=0.73 Score=39.08 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005389 50 VAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~ 70 (699)
|++.|..++|||++...|...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678899999999999998643
No 473
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=91.77 E-value=0.13 Score=53.36 Aligned_cols=22 Identities=36% Similarity=0.705 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-++|+|+.|||||||+.+|+|.
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999995
No 474
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=91.76 E-value=0.13 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 475
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=91.76 E-value=0.16 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|..|||||||++.|.|..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 476
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=91.75 E-value=0.49 Score=50.54 Aligned_cols=134 Identities=20% Similarity=0.328 Sum_probs=83.6
Q ss_pred CCCE--EEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHh
Q 005389 46 ELPQ--VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (699)
Q Consensus 46 ~lP~--IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (699)
+.|. |.-+|..--||+||--||+..- .. ..+..+.++++|.+.-++
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkil--a~----------------------------~g~A~~~kydeID~APEE-- 98 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKIL--AE----------------------------KGGAKFKKYDEIDKAPEE-- 98 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHH--Hh----------------------------ccccccccHhhhhcChhh--
Confidence 4454 5568999999999999997541 00 012234455555433222
Q ss_pred hhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcc-cch
Q 005389 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL-ANS 202 (699)
Q Consensus 124 ~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~-~~~ 202 (699)
...|++-+..+++...+. ....=+|.||-. +.+++|+.... +-|..||+|...+-.. .+.
T Consensus 99 -----kaRGITIn~aHveYeTa~-RhYaH~DCPGHA------------DYIKNMItGaa-qMDGaILVVaatDG~MPQTr 159 (449)
T KOG0460|consen 99 -----KARGITINAAHVEYETAK-RHYAHTDCPGHA------------DYIKNMITGAA-QMDGAILVVAATDGPMPQTR 159 (449)
T ss_pred -----hhccceEeeeeeeeeccc-cccccCCCCchH------------HHHHHhhcCcc-ccCceEEEEEcCCCCCcchH
Confidence 124666666677766654 367789999943 35666664433 3455777765544333 344
Q ss_pred HHHHHHHhhCCCCCcEEEeecccccCCCcc
Q 005389 203 DALQIAGIADPDGYRTIGIITKLDIMDRGT 232 (699)
Q Consensus 203 ~~l~l~~~~dp~g~rti~VlTK~D~~~~~~ 232 (699)
+-+-||+++.- .++++.+||.|+++..+
T Consensus 160 EHlLLArQVGV--~~ivvfiNKvD~V~d~e 187 (449)
T KOG0460|consen 160 EHLLLARQVGV--KHIVVFINKVDLVDDPE 187 (449)
T ss_pred HHHHHHHHcCC--ceEEEEEecccccCCHH
Confidence 55778999864 67888899999996433
No 477
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=91.74 E-value=0.14 Score=51.92 Aligned_cols=23 Identities=57% Similarity=0.729 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999983
No 478
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.73 E-value=0.15 Score=50.03 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.++++|+.|||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999997
No 479
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=91.71 E-value=0.15 Score=46.16 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+|+|.++|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999754
No 480
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=91.71 E-value=0.16 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|..|||||||++.|.|..
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 59999999999999999999973
No 481
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=91.68 E-value=0.15 Score=50.86 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-.++|+|+.+||||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999973
No 482
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=91.67 E-value=0.14 Score=51.98 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCc
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~ 79 (699)
.++++|+.|||||||++.|+|.. |-.+|.
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~ 43 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD--APDEGD 43 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--cCCCCC
Confidence 47899999999999999999984 334443
No 483
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=91.64 E-value=0.17 Score=53.12 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|.-
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999983
No 484
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=91.63 E-value=0.14 Score=55.35 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-++++|+.||||||||+.|.|..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999986
No 485
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.63 E-value=0.16 Score=52.06 Aligned_cols=23 Identities=43% Similarity=0.587 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.+||||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999999974
No 486
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.63 E-value=0.15 Score=53.36 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCc
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~ 79 (699)
.++|+|..+||||||++.|.|.. +-..|.
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~--~p~~G~ 56 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKL--KPNLGK 56 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--CCCCce
Confidence 69999999999999999999983 433443
No 487
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.62 E-value=0.18 Score=50.73 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|..|+|||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999974
No 488
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.60 E-value=0.16 Score=54.02 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~ 78 (699)
.++|+|+.|||||||++.|.|.- +...|
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~--~p~~G 62 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALL--KPSSG 62 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 58899999999999999999973 44444
No 489
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.59 E-value=0.16 Score=52.27 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|+|||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999973
No 490
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.59 E-value=0.18 Score=50.55 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|..+||||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 491
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.59 E-value=0.16 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.+||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 48899999999999999999984
No 492
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=91.58 E-value=0.14 Score=51.35 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|..+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 47899999999999999999973
No 493
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=91.58 E-value=0.17 Score=51.46 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|..|+|||||++.|.|..
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 494
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=91.57 E-value=0.16 Score=52.50 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.++|+|..|||||||++.|.|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5889999999999999999996
No 495
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.57 E-value=0.14 Score=52.59 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999973
No 496
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.56 E-value=0.18 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|..|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 497
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=91.55 E-value=0.14 Score=52.05 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999973
No 498
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=91.51 E-value=0.17 Score=51.19 Aligned_cols=23 Identities=43% Similarity=0.667 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.+||||||++.|.|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 48899999999999999999984
No 499
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=91.49 E-value=0.15 Score=52.85 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
++....+|||+.|||||||++||.+.
T Consensus 23 ~~~~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 23 FDPQFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45677999999999999999999865
No 500
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.49 E-value=0.15 Score=49.71 Aligned_cols=23 Identities=17% Similarity=0.481 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|..++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
Done!