Query 005389
Match_columns 699
No_of_seqs 458 out of 2890
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 23:58:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 5E-111 2E-115 977.4 48.9 655 21-695 25-720 (772)
2 3szr_A Interferon-induced GTP- 100.0 3.1E-80 1E-84 715.2 47.2 483 21-511 20-513 (608)
3 3t34_A Dynamin-related protein 100.0 7.9E-49 2.7E-53 426.4 26.8 319 22-340 1-328 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 3.8E-47 1.3E-51 412.1 34.6 338 21-360 5-345 (353)
5 1jwy_B Dynamin A GTPase domain 100.0 3.7E-39 1.3E-43 342.8 28.6 309 23-332 1-315 (315)
6 2aka_B Dynamin-1; fusion prote 100.0 5E-37 1.7E-41 323.6 32.1 299 22-322 1-299 (299)
7 3ljb_A Interferon-induced GTP- 100.0 1.9E-34 6.4E-39 296.8 17.8 171 339-515 3-177 (271)
8 2j69_A Bacterial dynamin-like 99.8 9.4E-18 3.2E-22 196.4 20.2 190 23-231 49-246 (695)
9 4dhe_A Probable GTP-binding pr 99.5 4.3E-13 1.5E-17 133.9 14.8 129 45-230 27-159 (223)
10 3pqc_A Probable GTP-binding pr 99.5 1.4E-12 4.9E-17 126.6 17.8 125 45-230 21-148 (195)
11 3iev_A GTP-binding protein ERA 99.4 1.6E-12 5.5E-17 137.6 18.1 125 47-229 10-136 (308)
12 1svi_A GTP-binding protein YSX 99.4 2.7E-12 9.2E-17 125.1 16.0 124 45-230 21-149 (195)
13 1wf3_A GTP-binding protein; GT 99.4 2.5E-12 8.4E-17 135.8 14.8 123 47-230 7-132 (301)
14 3t5d_A Septin-7; GTP-binding p 99.4 4.6E-12 1.6E-16 131.7 16.0 136 48-230 9-159 (274)
15 2qpt_A EH domain-containing pr 99.4 2.2E-12 7.4E-17 147.0 12.3 164 46-230 64-233 (550)
16 3lxx_A GTPase IMAP family memb 99.3 5E-12 1.7E-16 128.4 11.9 128 45-230 27-160 (239)
17 4dcu_A GTP-binding protein ENG 99.3 1.4E-11 4.7E-16 137.5 16.4 202 20-308 167-372 (456)
18 2xtp_A GTPase IMAP family memb 99.3 3.5E-11 1.2E-15 123.6 16.2 127 45-229 20-153 (260)
19 2hjg_A GTP-binding protein ENG 99.3 1.6E-11 5.3E-16 136.3 14.4 203 17-306 144-350 (436)
20 1mky_A Probable GTP-binding pr 99.3 9.1E-12 3.1E-16 138.3 12.2 123 47-228 1-123 (439)
21 2qu8_A Putative nucleolar GTP- 99.3 1.2E-10 4.1E-15 117.1 18.1 126 46-230 28-157 (228)
22 2hjg_A GTP-binding protein ENG 99.3 8.9E-12 3.1E-16 138.3 10.4 123 47-230 3-126 (436)
23 3q72_A GTP-binding protein RAD 99.3 3.4E-11 1.2E-15 113.8 12.7 116 47-230 2-121 (166)
24 3iby_A Ferrous iron transport 99.3 2E-11 6.9E-16 125.8 12.0 122 47-230 1-125 (256)
25 1ky3_A GTP-binding protein YPT 99.3 3E-11 1E-15 115.7 12.4 119 46-229 7-132 (182)
26 2dyk_A GTP-binding protein; GT 99.3 1.9E-11 6.3E-16 114.8 10.8 122 47-230 1-123 (161)
27 2cxx_A Probable GTP-binding pr 99.3 1.2E-10 4E-15 112.6 16.7 123 47-230 1-137 (190)
28 2g6b_A RAS-related protein RAB 99.2 2.9E-11 1E-15 115.8 11.9 119 47-230 10-131 (180)
29 4dcu_A GTP-binding protein ENG 99.2 8.5E-12 2.9E-16 139.2 8.6 125 45-230 21-146 (456)
30 2il1_A RAB12; G-protein, GDP, 99.2 3.5E-11 1.2E-15 117.6 11.9 117 47-229 26-145 (192)
31 3lxw_A GTPase IMAP family memb 99.2 2.3E-11 7.7E-16 124.7 10.8 126 47-229 21-153 (247)
32 1zbd_A Rabphilin-3A; G protein 99.2 7.4E-11 2.5E-15 115.8 14.1 166 47-311 8-177 (203)
33 3tw8_B RAS-related protein RAB 99.2 1.8E-11 6.2E-16 117.1 9.0 166 46-310 8-176 (181)
34 4bas_A ADP-ribosylation factor 99.2 4.6E-11 1.6E-15 116.5 11.9 117 45-230 15-142 (199)
35 2f7s_A C25KG, RAS-related prot 99.2 1.3E-10 4.4E-15 115.4 15.2 67 149-229 85-155 (217)
36 1ega_A Protein (GTP-binding pr 99.2 5.3E-12 1.8E-16 133.3 5.2 123 45-229 6-130 (301)
37 3clv_A RAB5 protein, putative; 99.2 5.4E-11 1.9E-15 115.7 11.9 28 46-73 6-33 (208)
38 3gee_A MNME, tRNA modification 99.2 7.8E-11 2.7E-15 131.8 14.5 121 48-230 234-358 (476)
39 3cph_A RAS-related protein SEC 99.2 9.1E-11 3.1E-15 115.8 13.3 117 46-228 19-138 (213)
40 3bc1_A RAS-related protein RAB 99.2 1.6E-10 5.5E-15 111.6 14.7 67 149-229 71-141 (195)
41 1u8z_A RAS-related protein RAL 99.2 1.2E-10 4.2E-15 109.5 13.4 117 47-230 4-124 (168)
42 1g16_A RAS-related protein SEC 99.2 5.5E-11 1.9E-15 112.5 10.8 115 48-228 4-121 (170)
43 2fn4_A P23, RAS-related protei 99.2 6.1E-11 2.1E-15 113.4 10.9 117 46-229 8-128 (181)
44 1wms_A RAB-9, RAB9, RAS-relate 99.2 1.1E-10 3.9E-15 111.3 12.7 26 47-72 7-32 (177)
45 1c1y_A RAS-related protein RAP 99.2 1.3E-10 4.5E-15 109.5 12.9 115 48-229 4-122 (167)
46 2bme_A RAB4A, RAS-related prot 99.2 1.7E-10 5.9E-15 111.2 13.7 117 47-229 10-129 (186)
47 2lkc_A Translation initiation 99.2 2.5E-11 8.6E-16 116.0 7.6 117 45-230 6-122 (178)
48 2oil_A CATX-8, RAS-related pro 99.2 1.1E-10 3.7E-15 113.7 12.3 118 47-230 25-145 (193)
49 3con_A GTPase NRAS; structural 99.2 1.4E-10 4.9E-15 112.4 13.0 116 47-229 21-140 (190)
50 1z0f_A RAB14, member RAS oncog 99.2 1.4E-10 4.7E-15 110.6 12.7 118 46-229 14-134 (179)
51 4dsu_A GTPase KRAS, isoform 2B 99.2 2.3E-10 8E-15 110.2 14.3 116 48-230 5-124 (189)
52 2nzj_A GTP-binding protein REM 99.2 1.9E-10 6.4E-15 109.5 13.3 119 47-230 4-126 (175)
53 3tkl_A RAS-related protein RAB 99.2 2.2E-10 7.7E-15 111.3 14.0 118 47-230 16-136 (196)
54 2yc2_C IFT27, small RAB-relate 99.2 6.6E-11 2.3E-15 116.1 10.2 120 148-314 73-201 (208)
55 1mky_A Probable GTP-binding pr 99.2 1.3E-10 4.3E-15 129.1 13.7 204 18-306 146-356 (439)
56 2a9k_A RAS-related protein RAL 99.2 3E-10 1E-14 109.1 14.3 119 45-230 16-138 (187)
57 3dz8_A RAS-related protein RAB 99.2 7.1E-11 2.4E-15 115.0 10.0 117 47-229 23-142 (191)
58 2o52_A RAS-related protein RAB 99.2 1.9E-10 6.4E-15 113.2 12.8 117 47-229 25-144 (200)
59 2ged_A SR-beta, signal recogni 99.2 7.9E-11 2.7E-15 114.5 9.9 54 19-72 20-73 (193)
60 1z2a_A RAS-related protein RAB 99.2 6.5E-11 2.2E-15 111.7 8.9 26 47-72 5-30 (168)
61 3geh_A MNME, tRNA modification 99.2 9E-11 3.1E-15 130.8 11.4 121 48-231 225-346 (462)
62 1xzp_A Probable tRNA modificat 99.1 5.5E-11 1.9E-15 133.2 9.4 119 48-229 244-364 (482)
63 2qtf_A Protein HFLX, GTP-bindi 99.1 6.5E-10 2.2E-14 120.3 17.3 126 46-231 178-308 (364)
64 3k53_A Ferrous iron transport 99.1 9.1E-11 3.1E-15 121.6 10.2 117 47-229 3-123 (271)
65 1vg8_A RAS-related protein RAB 99.1 1E-10 3.6E-15 114.8 10.2 27 47-73 8-34 (207)
66 2ce2_X GTPase HRAS; signaling 99.1 7.9E-11 2.7E-15 110.4 8.9 115 48-229 4-122 (166)
67 1kao_A RAP2A; GTP-binding prot 99.1 1.3E-10 4.3E-15 109.3 10.3 115 48-229 4-122 (167)
68 2bov_A RAla, RAS-related prote 99.1 4.1E-10 1.4E-14 110.4 14.3 120 44-230 11-134 (206)
69 1h65_A Chloroplast outer envel 99.1 1.9E-10 6.6E-15 119.1 12.4 126 45-231 37-170 (270)
70 2gf9_A RAS-related protein RAB 99.1 1E-10 3.6E-15 113.5 9.7 118 47-230 22-142 (189)
71 2a5j_A RAS-related protein RAB 99.1 1.9E-10 6.6E-15 111.9 11.6 117 47-229 21-140 (191)
72 2ew1_A RAS-related protein RAB 99.1 3.5E-10 1.2E-14 111.8 13.0 117 47-229 26-145 (201)
73 1z0j_A RAB-22, RAS-related pro 99.1 7.4E-11 2.5E-15 111.6 7.7 118 47-230 6-126 (170)
74 1x3s_A RAS-related protein RAB 99.1 2E-10 6.7E-15 111.5 10.7 117 47-229 15-135 (195)
75 3kkq_A RAS-related protein M-R 99.1 2.3E-10 7.8E-15 110.1 11.0 118 45-229 16-137 (183)
76 2iwr_A Centaurin gamma 1; ANK 99.1 4.7E-10 1.6E-14 107.4 13.1 27 47-73 7-33 (178)
77 2y8e_A RAB-protein 6, GH09086P 99.1 4.8E-11 1.7E-15 113.9 6.0 118 47-230 14-134 (179)
78 1ek0_A Protein (GTP-binding pr 99.1 1.1E-10 3.9E-15 110.1 8.5 117 48-230 4-123 (170)
79 3i8s_A Ferrous iron transport 99.1 1.2E-10 4.1E-15 121.1 9.4 121 47-229 3-126 (274)
80 2bcg_Y Protein YP2, GTP-bindin 99.1 2.9E-10 1E-14 111.9 11.7 118 47-230 8-128 (206)
81 2wjg_A FEOB, ferrous iron tran 99.1 1E-10 3.5E-15 113.1 8.3 120 45-229 5-126 (188)
82 1z06_A RAS-related protein RAB 99.1 1.7E-10 5.9E-15 112.0 9.8 118 47-230 20-142 (189)
83 1r8s_A ADP-ribosylation factor 99.1 4.1E-10 1.4E-14 106.1 12.1 69 148-230 44-116 (164)
84 1z08_A RAS-related protein RAB 99.1 1.2E-10 4E-15 110.3 8.1 118 47-230 6-126 (170)
85 1upt_A ARL1, ADP-ribosylation 99.1 5.2E-10 1.8E-14 105.9 12.5 113 47-230 7-123 (171)
86 1zd9_A ADP-ribosylation factor 99.1 8.4E-10 2.9E-14 107.2 14.2 113 48-230 23-139 (188)
87 2erx_A GTP-binding protein DI- 99.1 1.1E-10 3.6E-15 110.5 7.6 68 149-230 52-124 (172)
88 3a1s_A Iron(II) transport prot 99.1 3.9E-10 1.3E-14 116.2 12.3 117 47-229 5-124 (258)
89 2e87_A Hypothetical protein PH 99.1 1.8E-09 6.2E-14 116.5 18.1 125 45-230 165-295 (357)
90 2efe_B Small GTP-binding prote 99.1 1.1E-10 3.9E-15 111.8 7.5 118 47-230 12-132 (181)
91 2hup_A RAS-related protein RAB 99.1 7.2E-10 2.5E-14 109.1 13.4 117 47-229 29-148 (201)
92 2gj8_A MNME, tRNA modification 99.1 1E-09 3.5E-14 105.4 13.8 122 48-229 5-129 (172)
93 2fu5_C RAS-related protein RAB 99.1 1.5E-10 5.1E-15 111.4 7.9 68 149-230 58-128 (183)
94 2p5s_A RAS and EF-hand domain 99.1 2.3E-10 8E-15 112.2 9.3 118 46-229 27-147 (199)
95 2wji_A Ferrous iron transport 99.1 5.4E-10 1.8E-14 106.3 11.4 116 48-229 4-122 (165)
96 3q85_A GTP-binding protein REM 99.1 3.4E-10 1.2E-14 107.2 9.9 26 47-72 2-27 (169)
97 3reg_A RHO-like small GTPase; 99.1 2.6E-10 9E-15 111.1 9.2 117 46-230 22-142 (194)
98 2q3h_A RAS homolog gene family 99.1 3.5E-10 1.2E-14 110.7 10.1 117 46-230 19-139 (201)
99 2atx_A Small GTP binding prote 99.1 5.2E-10 1.8E-14 108.9 11.0 116 48-231 19-138 (194)
100 1mh1_A RAC1; GTP-binding, GTPa 99.1 2.8E-10 9.6E-15 109.3 9.0 117 47-231 5-125 (186)
101 2gco_A H9, RHO-related GTP-bin 99.1 2.6E-10 8.7E-15 112.2 8.8 116 48-231 26-145 (201)
102 2fg5_A RAB-22B, RAS-related pr 99.1 3.3E-10 1.1E-14 110.5 9.6 67 149-229 73-142 (192)
103 3t1o_A Gliding protein MGLA; G 99.1 1.5E-09 5.1E-14 105.2 14.2 68 149-230 75-150 (198)
104 2j1l_A RHO-related GTP-binding 99.1 6.2E-10 2.1E-14 110.8 11.7 117 47-231 34-154 (214)
105 3oes_A GTPase rhebl1; small GT 99.1 9.7E-11 3.3E-15 115.1 5.7 118 46-230 23-144 (201)
106 4gzl_A RAS-related C3 botulinu 99.0 2.3E-10 7.9E-15 113.0 7.7 119 46-232 29-151 (204)
107 3b1v_A Ferrous iron uptake tra 99.0 7.3E-10 2.5E-14 115.1 11.8 116 47-229 3-121 (272)
108 2fh5_B SR-beta, signal recogni 99.0 7.9E-10 2.7E-14 109.5 11.6 118 46-231 6-131 (214)
109 3def_A T7I23.11 protein; chlor 99.0 9.9E-10 3.4E-14 113.3 12.7 124 46-230 35-166 (262)
110 1ksh_A ARF-like protein 2; sma 99.0 6E-10 2.1E-14 107.5 10.4 114 46-230 17-134 (186)
111 4djt_A GTP-binding nuclear pro 99.0 1.3E-10 4.4E-15 115.6 5.7 68 149-230 62-132 (218)
112 2h57_A ADP-ribosylation factor 99.0 2.8E-10 9.6E-15 110.5 8.0 115 47-230 21-141 (190)
113 2fv8_A H6, RHO-related GTP-bin 99.0 4E-10 1.4E-14 111.3 9.2 115 48-230 26-144 (207)
114 1lnz_A SPO0B-associated GTP-bi 99.0 2E-10 7E-15 123.1 7.6 25 47-71 158-182 (342)
115 1r2q_A RAS-related protein RAB 99.0 2.3E-10 8E-15 107.9 7.0 67 149-229 56-125 (170)
116 1zj6_A ADP-ribosylation factor 99.0 5.2E-10 1.8E-14 108.3 9.5 114 46-230 15-132 (187)
117 2hxs_A RAB-26, RAS-related pro 99.0 1.7E-10 6E-15 110.1 5.9 26 47-72 6-31 (178)
118 1moz_A ARL1, ADP-ribosylation 99.0 5.5E-10 1.9E-14 107.3 9.4 114 46-230 17-134 (183)
119 2atv_A RERG, RAS-like estrogen 99.0 1.3E-09 4.6E-14 106.4 12.2 116 46-229 27-146 (196)
120 3t5g_A GTP-binding protein RHE 99.0 2.6E-10 8.9E-15 109.5 6.8 117 47-230 6-126 (181)
121 2b6h_A ADP-ribosylation factor 99.0 8.8E-10 3E-14 107.7 10.0 114 46-230 28-145 (192)
122 2gf0_A GTP-binding protein DI- 99.0 4.5E-10 1.6E-14 109.4 7.9 27 46-72 7-33 (199)
123 3cpj_B GTP-binding protein YPT 99.0 5.6E-10 1.9E-14 111.7 8.7 117 47-229 13-132 (223)
124 3ihw_A Centg3; RAS, centaurin, 99.0 2.3E-09 7.8E-14 104.1 12.1 27 46-72 19-45 (184)
125 4a9a_A Ribosome-interacting GT 99.0 5.1E-10 1.8E-14 121.1 8.1 122 46-228 71-195 (376)
126 2h17_A ADP-ribosylation factor 99.0 6.7E-10 2.3E-14 107.1 7.9 113 47-230 21-137 (181)
127 2x77_A ADP-ribosylation factor 99.0 2.8E-10 9.5E-15 110.3 5.1 114 46-230 21-138 (189)
128 1f6b_A SAR1; gtpases, N-termin 99.0 9.7E-10 3.3E-14 108.0 8.7 122 35-229 15-140 (198)
129 3bwd_D RAC-like GTP-binding pr 99.0 3.5E-10 1.2E-14 108.5 5.1 67 149-230 57-127 (182)
130 3qq5_A Small GTP-binding prote 99.0 7.3E-10 2.5E-14 122.0 8.3 123 46-231 33-156 (423)
131 2j0v_A RAC-like GTP-binding pr 99.0 6.2E-10 2.1E-14 110.1 6.8 116 47-230 9-128 (212)
132 4dkx_A RAS-related protein RAB 98.9 1.9E-09 6.4E-14 108.2 10.0 70 148-230 62-133 (216)
133 3dpu_A RAB family protein; roc 98.9 5.4E-09 1.8E-13 118.9 14.9 148 24-230 15-165 (535)
134 1fzq_A ADP-ribosylation factor 98.9 3.1E-09 1.1E-13 102.7 10.9 115 45-230 14-132 (181)
135 3q3j_B RHO-related GTP-binding 98.9 8.2E-10 2.8E-14 110.0 6.7 117 46-230 26-146 (214)
136 1m7b_A RND3/RHOE small GTP-bin 98.9 1.6E-09 5.4E-14 104.7 8.4 26 47-72 7-32 (184)
137 3c5c_A RAS-like protein 12; GD 98.9 1.1E-09 3.7E-14 106.5 7.3 25 48-72 22-46 (187)
138 1gwn_A RHO-related GTP-binding 98.9 2.4E-09 8E-14 106.1 9.7 26 47-72 28-53 (205)
139 1nrj_B SR-beta, signal recogni 98.9 3.1E-09 1.1E-13 105.4 10.5 28 45-72 10-37 (218)
140 1m2o_B GTP-binding protein SAR 98.9 2E-09 7E-14 104.9 8.8 114 45-229 21-138 (190)
141 3o47_A ADP-ribosylation factor 98.9 3E-09 1E-13 113.5 10.8 111 49-230 167-281 (329)
142 3cbq_A GTP-binding protein REM 98.9 4.6E-09 1.6E-13 103.0 11.2 26 46-71 22-47 (195)
143 3llu_A RAS-related GTP-binding 98.9 3.6E-09 1.2E-13 103.4 10.2 119 46-230 19-144 (196)
144 3lvq_E ARF-GAP with SH3 domain 98.9 1.8E-09 6.3E-14 121.5 8.2 113 47-230 322-438 (497)
145 3l0i_B RAS-related protein RAB 98.9 7E-11 2.4E-15 115.9 -3.6 118 47-230 33-153 (199)
146 3sjy_A Translation initiation 98.9 6.6E-09 2.3E-13 114.0 11.6 66 149-230 76-144 (403)
147 3gj0_A GTP-binding nuclear pro 98.8 8E-10 2.7E-14 110.2 2.2 67 149-230 65-134 (221)
148 3th5_A RAS-related C3 botulinu 98.3 4.3E-10 1.5E-14 110.6 0.0 68 149-230 79-149 (204)
149 1wb1_A Translation elongation 98.8 7.9E-09 2.7E-13 115.9 10.2 65 148-229 73-139 (482)
150 3tr5_A RF-3, peptide chain rel 98.8 3.5E-09 1.2E-13 120.0 6.9 68 148-230 82-149 (528)
151 2wkq_A NPH1-1, RAS-related C3 98.8 1.4E-08 4.9E-13 107.1 11.1 118 46-231 154-275 (332)
152 3r7w_A Gtpase1, GTP-binding pr 98.8 1.2E-08 4E-13 107.8 9.8 73 148-229 52-129 (307)
153 2g3y_A GTP-binding protein GEM 98.8 7.4E-08 2.5E-12 96.1 15.1 26 46-71 36-61 (211)
154 3p26_A Elongation factor 1 alp 98.8 3.2E-08 1.1E-12 111.1 13.5 146 46-230 32-186 (483)
155 2qag_A Septin-2, protein NEDD5 98.8 1.7E-08 5.7E-13 109.2 9.9 81 148-230 95-189 (361)
156 3j2k_7 ERF3, eukaryotic polype 98.7 2.2E-08 7.4E-13 111.1 10.9 148 46-230 16-170 (439)
157 1wxq_A GTP-binding protein; st 98.7 6.7E-09 2.3E-13 113.6 6.0 37 49-86 2-39 (397)
158 3izy_P Translation initiation 98.7 2E-09 6.8E-14 121.7 1.2 117 46-230 3-119 (537)
159 3izq_1 HBS1P, elongation facto 98.7 4.7E-08 1.6E-12 112.6 12.6 146 46-229 166-319 (611)
160 2qag_B Septin-6, protein NEDD5 98.7 2.3E-08 7.8E-13 109.7 9.5 82 148-231 95-192 (427)
161 3cb4_D GTP-binding protein LEP 98.7 3.2E-08 1.1E-12 113.4 10.9 68 148-230 71-138 (599)
162 1kk1_A EIF2gamma; initiation o 98.7 1.1E-07 3.6E-12 104.5 14.3 67 148-230 83-152 (410)
163 2ywe_A GTP-binding protein LEP 98.7 5.5E-08 1.9E-12 111.4 12.1 68 148-230 73-140 (600)
164 2f9l_A RAB11B, member RAS onco 98.7 9.1E-08 3.1E-12 93.6 11.8 26 47-72 5-30 (199)
165 2h5e_A Peptide chain release f 98.7 4.8E-08 1.6E-12 110.7 10.0 69 148-231 82-150 (529)
166 1pui_A ENGB, probable GTP-bind 98.7 5.5E-08 1.9E-12 95.7 9.2 78 149-231 73-153 (210)
167 1s0u_A EIF-2-gamma, translatio 98.6 1.3E-07 4.6E-12 103.7 12.9 67 148-230 81-150 (408)
168 2c78_A Elongation factor TU-A; 98.6 6.4E-08 2.2E-12 106.1 9.9 67 148-229 75-142 (405)
169 2qag_C Septin-7; cell cycle, c 98.6 1.8E-07 6.1E-12 102.8 13.2 81 148-230 88-182 (418)
170 2cjw_A GTP-binding protein GEM 98.6 1.5E-07 5.2E-12 91.8 11.3 24 47-70 6-29 (192)
171 2elf_A Protein translation elo 98.6 1.6E-07 5.3E-12 101.8 12.3 61 149-227 61-125 (370)
172 2zej_A Dardarin, leucine-rich 98.6 5.4E-08 1.9E-12 94.0 7.6 23 48-70 3-25 (184)
173 1g7s_A Translation initiation 98.6 1.9E-08 6.4E-13 115.4 3.8 66 149-229 71-136 (594)
174 1zun_B Sulfate adenylate trans 98.6 1.9E-07 6.5E-12 103.3 11.6 148 46-230 23-172 (434)
175 3ec1_A YQEH GTPase; atnos1, at 98.6 1.4E-08 5E-13 109.9 2.4 41 21-70 145-185 (369)
176 2xex_A Elongation factor G; GT 98.6 3.6E-08 1.2E-12 115.3 5.9 68 148-230 75-142 (693)
177 1d2e_A Elongation factor TU (E 98.6 1.6E-07 5.4E-12 102.7 10.6 65 148-229 66-133 (397)
178 2rdo_7 EF-G, elongation factor 98.6 2.6E-07 8.9E-12 108.2 12.9 68 148-230 82-149 (704)
179 1zo1_I IF2, translation initia 98.6 9.5E-09 3.3E-13 115.2 0.6 65 149-230 52-118 (501)
180 3p32_A Probable GTPase RV1496/ 98.6 4.8E-07 1.6E-11 97.4 13.9 24 46-69 78-101 (355)
181 1f60_A Elongation factor EEF1A 98.5 1.8E-07 6.1E-12 104.3 10.1 142 47-229 7-159 (458)
182 3sop_A Neuronal-specific septi 98.5 1.8E-07 6.1E-12 97.0 9.0 82 148-231 60-156 (270)
183 2www_A Methylmalonic aciduria 98.5 4.7E-07 1.6E-11 97.3 11.4 26 45-70 72-97 (349)
184 1dar_A EF-G, elongation factor 98.4 1.7E-07 5.9E-12 109.5 7.4 68 148-230 77-144 (691)
185 3h2y_A GTPase family protein; 98.4 6.8E-08 2.3E-12 104.6 3.5 42 21-71 143-184 (368)
186 1jny_A EF-1-alpha, elongation 98.4 2.2E-07 7.7E-12 102.8 7.7 68 148-230 84-159 (435)
187 2qnr_A Septin-2, protein NEDD5 98.4 1.1E-06 3.7E-11 92.5 12.2 27 49-75 20-46 (301)
188 1oix_A RAS-related protein RAB 98.4 3.6E-07 1.2E-11 89.0 7.4 26 47-72 29-54 (191)
189 1n0u_A EF-2, elongation factor 98.4 2.6E-07 8.8E-12 110.3 6.6 66 148-228 98-163 (842)
190 3avx_A Elongation factor TS, e 98.4 8.7E-07 3E-11 106.8 10.4 65 148-229 359-426 (1289)
191 1udx_A The GTP-binding protein 98.3 1.2E-06 4E-11 96.2 10.4 25 47-71 157-181 (416)
192 2dy1_A Elongation factor G; tr 98.3 1.3E-06 4.6E-11 101.6 11.1 131 47-228 9-139 (665)
193 1jal_A YCHF protein; nucleotid 98.3 5E-07 1.7E-11 97.2 6.3 37 48-84 3-39 (363)
194 1r5b_A Eukaryotic peptide chai 98.3 5.7E-07 1.9E-11 100.4 6.1 65 148-229 121-195 (467)
195 3mca_A HBS1, elongation factor 98.3 2.7E-08 9.1E-13 114.3 -5.3 23 48-70 178-200 (592)
196 3c5h_A Glucocorticoid receptor 98.3 4.2E-07 1.5E-11 93.1 4.2 25 46-70 18-51 (255)
197 3vqt_A RF-3, peptide chain rel 98.3 1.5E-06 5.1E-11 98.8 9.1 134 48-230 32-167 (548)
198 1yrb_A ATP(GTP)binding protein 98.2 1.5E-05 5.2E-10 81.1 14.3 28 46-73 13-45 (262)
199 2ohf_A Protein OLA1, GTP-bindi 98.2 1.5E-06 5.2E-11 94.4 6.6 37 47-84 22-59 (396)
200 3r7w_B Gtpase2, GTP-binding pr 98.2 3.4E-06 1.2E-10 89.3 8.8 71 148-230 46-121 (331)
201 3dm5_A SRP54, signal recogniti 98.1 3.9E-05 1.3E-09 84.5 16.8 81 148-239 183-263 (443)
202 2p67_A LAO/AO transport system 98.1 2.1E-06 7.1E-11 91.9 6.3 25 46-70 55-79 (341)
203 1puj_A YLQF, conserved hypothe 98.1 6.6E-06 2.2E-10 85.7 9.7 32 46-77 119-150 (282)
204 2j37_W Signal recognition part 98.1 9.6E-06 3.3E-10 91.0 11.7 76 148-235 184-260 (504)
205 2qm8_A GTPase/ATPase; G protei 98.1 4.2E-05 1.4E-09 81.6 15.6 25 46-70 54-78 (337)
206 2dby_A GTP-binding protein; GD 98.1 3.3E-06 1.1E-10 91.2 6.4 37 48-84 2-38 (368)
207 3j25_A Tetracycline resistance 98.1 1.8E-06 6.1E-11 100.1 4.6 133 48-231 3-135 (638)
208 1tq4_A IIGP1, interferon-induc 98.1 1E-05 3.6E-10 88.5 10.3 70 147-228 119-188 (413)
209 1f5n_A Interferon-induced guan 98.0 9.3E-06 3.2E-10 92.6 8.6 28 45-72 36-63 (592)
210 4fn5_A EF-G 1, elongation fact 98.0 8.5E-06 2.9E-10 95.6 8.3 136 47-230 13-152 (709)
211 2wsm_A Hydrogenase expression/ 97.9 1.2E-05 4.2E-10 79.5 7.6 25 46-70 29-53 (221)
212 1ni3_A YCHF GTPase, YCHF GTP-b 97.9 1.3E-05 4.4E-10 87.2 6.9 39 47-85 20-59 (392)
213 2v3c_C SRP54, signal recogniti 97.7 8.8E-05 3E-09 81.8 10.1 77 148-236 181-259 (432)
214 3kl4_A SRP54, signal recogniti 97.6 9.3E-05 3.2E-09 81.4 9.1 81 148-237 180-260 (433)
215 3cnl_A YLQF, putative uncharac 97.6 2.9E-05 9.8E-10 79.9 4.6 26 48-73 100-125 (262)
216 2yhs_A FTSY, cell division pro 97.6 0.00011 3.8E-09 81.7 9.4 82 149-239 377-462 (503)
217 2hf9_A Probable hydrogenase ni 97.6 0.00015 5.1E-09 71.8 9.0 26 46-71 37-62 (226)
218 2px0_A Flagellar biosynthesis 97.6 0.00049 1.7E-08 71.9 13.3 97 148-259 183-281 (296)
219 2xxa_A Signal recognition part 97.5 0.00048 1.6E-08 75.9 11.8 77 148-235 184-260 (433)
220 1j8m_F SRP54, signal recogniti 97.3 0.00053 1.8E-08 71.7 9.7 82 148-238 181-262 (297)
221 3q5d_A Atlastin-1; G protein, 97.3 0.00042 1.5E-08 76.4 9.0 24 47-70 67-90 (447)
222 1rj9_A FTSY, signal recognitio 97.3 0.00058 2E-08 71.7 9.5 100 149-255 186-285 (304)
223 1vma_A Cell division protein F 97.2 0.00018 6.3E-09 75.6 4.8 97 148-255 187-287 (306)
224 3e70_C DPA, signal recognition 97.2 0.00079 2.7E-08 71.4 9.7 78 149-237 213-290 (328)
225 1zu4_A FTSY; GTPase, signal re 97.1 0.007 2.4E-07 63.9 14.8 97 148-255 192-292 (320)
226 2ffh_A Protein (FFH); SRP54, s 97.0 0.0013 4.4E-08 72.2 8.4 79 148-237 181-259 (425)
227 1ls1_A Signal recognition part 96.5 0.0066 2.3E-07 63.2 9.5 94 148-254 181-274 (295)
228 2og2_A Putative signal recogni 96.4 0.0078 2.7E-07 64.5 9.5 85 149-238 242-326 (359)
229 3b9q_A Chloroplast SRP recepto 96.3 0.0094 3.2E-07 62.3 9.1 85 149-238 185-269 (302)
230 1t9h_A YLOQ, probable GTPase E 95.6 0.0052 1.8E-07 64.4 3.1 24 48-71 174-197 (307)
231 4ido_A Atlastin-1; GTPase, GTP 95.5 0.046 1.6E-06 60.0 10.5 21 48-68 68-88 (457)
232 1puj_A YLQF, conserved hypothe 94.9 0.11 3.9E-06 53.5 10.6 54 173-230 12-65 (282)
233 3ney_A 55 kDa erythrocyte memb 94.3 0.017 5.9E-07 56.5 2.4 24 47-70 19-42 (197)
234 1lvg_A Guanylate kinase, GMP k 93.9 0.023 7.9E-07 55.2 2.5 22 49-70 6-27 (198)
235 1ex7_A Guanylate kinase; subst 93.9 0.022 7.4E-07 55.2 2.2 35 50-84 4-40 (186)
236 1kgd_A CASK, peripheral plasma 93.8 0.025 8.5E-07 54.0 2.5 23 48-70 6-28 (180)
237 1znw_A Guanylate kinase, GMP k 93.7 0.026 9E-07 55.1 2.5 22 49-70 22-43 (207)
238 2rcn_A Probable GTPase ENGC; Y 93.7 0.042 1.5E-06 58.7 4.3 23 49-71 217-239 (358)
239 1ye8_A Protein THEP1, hypothet 93.5 0.032 1.1E-06 53.5 2.7 22 49-70 2-23 (178)
240 3tif_A Uncharacterized ABC tra 93.4 0.037 1.3E-06 55.5 3.1 23 49-71 33-55 (235)
241 1u0l_A Probable GTPase ENGC; p 93.3 0.048 1.6E-06 56.7 3.8 24 48-71 170-193 (301)
242 3tr0_A Guanylate kinase, GMP k 93.2 0.034 1.2E-06 53.6 2.5 22 49-70 9-30 (205)
243 1s96_A Guanylate kinase, GMP k 93.2 0.035 1.2E-06 55.1 2.5 23 49-71 18-40 (219)
244 2pcj_A ABC transporter, lipopr 93.2 0.04 1.4E-06 54.8 2.9 23 49-71 32-54 (224)
245 3tau_A Guanylate kinase, GMP k 93.2 0.044 1.5E-06 53.6 3.1 22 49-70 10-31 (208)
246 1zp6_A Hypothetical protein AT 93.1 0.046 1.6E-06 52.1 3.2 22 49-70 11-32 (191)
247 3a00_A Guanylate kinase, GMP k 93.1 0.037 1.3E-06 53.0 2.5 21 50-70 4-24 (186)
248 1z6g_A Guanylate kinase; struc 93.1 0.038 1.3E-06 54.6 2.5 22 49-70 25-46 (218)
249 1sgw_A Putative ABC transporte 92.9 0.048 1.7E-06 53.9 3.1 23 49-71 37-59 (214)
250 2cbz_A Multidrug resistance-as 92.9 0.05 1.7E-06 54.6 3.1 23 49-71 33-55 (237)
251 2onk_A Molybdate/tungstate ABC 92.8 0.052 1.8E-06 54.7 3.2 24 48-71 25-48 (240)
252 1mv5_A LMRA, multidrug resista 92.8 0.052 1.8E-06 54.7 3.1 23 49-71 30-52 (243)
253 3c8u_A Fructokinase; YP_612366 92.8 0.037 1.3E-06 54.0 2.0 22 49-70 24-45 (208)
254 4g1u_C Hemin import ATP-bindin 92.8 0.051 1.7E-06 55.6 3.1 23 49-71 39-61 (266)
255 2pze_A Cystic fibrosis transme 92.7 0.054 1.8E-06 54.1 3.1 23 49-71 36-58 (229)
256 1g6h_A High-affinity branched- 92.7 0.054 1.8E-06 55.1 3.1 23 49-71 35-57 (257)
257 3gfo_A Cobalt import ATP-bindi 92.7 0.053 1.8E-06 55.8 3.1 23 49-71 36-58 (275)
258 1b0u_A Histidine permease; ABC 92.7 0.054 1.8E-06 55.3 3.1 23 49-71 34-56 (262)
259 2gza_A Type IV secretion syste 92.6 0.061 2.1E-06 57.5 3.6 22 49-70 177-198 (361)
260 2ff7_A Alpha-hemolysin translo 92.6 0.057 2E-06 54.6 3.1 23 49-71 37-59 (247)
261 1ji0_A ABC transporter; ATP bi 92.5 0.059 2E-06 54.2 3.1 23 49-71 34-56 (240)
262 2qi9_C Vitamin B12 import ATP- 92.5 0.06 2E-06 54.6 3.1 23 49-71 28-50 (249)
263 1vpl_A ABC transporter, ATP-bi 92.4 0.061 2.1E-06 54.7 3.1 23 49-71 43-65 (256)
264 2olj_A Amino acid ABC transpor 92.4 0.062 2.1E-06 54.9 3.1 23 49-71 52-74 (263)
265 2d2e_A SUFC protein; ABC-ATPas 92.4 0.065 2.2E-06 54.2 3.2 22 49-70 31-52 (250)
266 1odf_A YGR205W, hypothetical 3 92.3 0.12 3.9E-06 53.7 5.1 49 22-70 6-54 (290)
267 2ghi_A Transport protein; mult 92.3 0.064 2.2E-06 54.6 3.1 23 49-71 48-70 (260)
268 1np6_A Molybdopterin-guanine d 92.3 0.067 2.3E-06 51.1 3.0 25 46-70 5-29 (174)
269 1htw_A HI0065; nucleotide-bind 92.3 0.058 2E-06 50.7 2.5 23 49-71 35-57 (158)
270 2eyu_A Twitching motility prot 92.2 0.056 1.9E-06 55.1 2.6 22 49-70 27-48 (261)
271 2zu0_C Probable ATP-dependent 92.2 0.069 2.3E-06 54.6 3.2 22 49-70 48-69 (267)
272 2ixe_A Antigen peptide transpo 92.2 0.067 2.3E-06 54.8 3.1 23 49-71 47-69 (271)
273 4gp7_A Metallophosphoesterase; 92.2 0.07 2.4E-06 50.4 3.0 21 49-69 11-31 (171)
274 2pt7_A CAG-ALFA; ATPase, prote 92.2 0.057 2E-06 57.0 2.6 21 50-70 174-194 (330)
275 2nq2_C Hypothetical ABC transp 92.1 0.068 2.3E-06 54.2 3.0 23 49-71 33-55 (253)
276 2yz2_A Putative ABC transporte 92.1 0.071 2.4E-06 54.5 3.1 23 49-71 35-57 (266)
277 2oap_1 GSPE-2, type II secreti 92.1 0.064 2.2E-06 60.2 3.0 28 50-79 263-290 (511)
278 1zcb_A G alpha I/13; GTP-bindi 92.1 0.056 1.9E-06 57.9 2.5 69 148-229 201-282 (362)
279 4fid_A G protein alpha subunit 92.1 0.086 3E-06 55.9 3.8 69 148-229 161-242 (340)
280 2ihy_A ABC transporter, ATP-bi 92.0 0.071 2.4E-06 54.9 3.1 23 49-71 49-71 (279)
281 3asz_A Uridine kinase; cytidin 92.0 0.059 2E-06 52.4 2.3 22 49-70 8-29 (211)
282 3ohm_A Guanine nucleotide-bind 91.8 0.088 3E-06 55.5 3.5 69 148-229 167-248 (327)
283 2f1r_A Molybdopterin-guanine d 91.7 0.046 1.6E-06 52.1 1.0 23 48-70 3-25 (171)
284 3b85_A Phosphate starvation-in 91.6 0.056 1.9E-06 53.2 1.7 21 50-70 25-45 (208)
285 2j41_A Guanylate kinase; GMP, 91.5 0.08 2.7E-06 50.9 2.7 22 49-70 8-29 (207)
286 3nh6_A ATP-binding cassette SU 91.5 0.07 2.4E-06 55.8 2.3 23 49-71 82-104 (306)
287 2v9p_A Replication protein E1; 91.5 0.078 2.7E-06 55.4 2.7 22 49-70 128-149 (305)
288 2pjz_A Hypothetical protein ST 91.4 0.092 3.1E-06 53.6 3.1 25 49-75 32-56 (263)
289 2yv5_A YJEQ protein; hydrolase 91.4 0.13 4.4E-06 53.5 4.2 22 48-70 166-187 (302)
290 3kta_A Chromosome segregation 91.4 0.078 2.7E-06 50.1 2.3 23 48-70 27-49 (182)
291 1cip_A Protein (guanine nucleo 91.3 0.044 1.5E-06 58.5 0.5 69 148-229 193-274 (353)
292 1kag_A SKI, shikimate kinase I 91.3 0.085 2.9E-06 49.3 2.5 22 49-70 6-27 (173)
293 4a74_A DNA repair and recombin 91.3 0.12 4.2E-06 50.4 3.8 30 49-78 27-56 (231)
294 2bbs_A Cystic fibrosis transme 91.1 0.098 3.3E-06 54.2 2.9 23 49-71 66-88 (290)
295 2bdt_A BH3686; alpha-beta prot 91.1 0.091 3.1E-06 50.1 2.5 20 50-69 5-24 (189)
296 3jvv_A Twitching mobility prot 91.0 0.088 3E-06 56.2 2.5 22 49-70 125-146 (356)
297 3lnc_A Guanylate kinase, GMP k 90.9 0.076 2.6E-06 52.5 1.9 22 49-70 29-51 (231)
298 3h2y_A GTPase family protein; 90.9 0.44 1.5E-05 51.0 7.9 56 172-231 57-112 (368)
299 4eun_A Thermoresistant glucoki 90.8 0.098 3.4E-06 50.5 2.5 23 48-70 30-52 (200)
300 3ec1_A YQEH GTPase; atnos1, at 90.8 0.38 1.3E-05 51.5 7.2 56 172-231 59-114 (369)
301 2bbw_A Adenylate kinase 4, AK4 90.6 0.14 4.8E-06 51.2 3.4 24 48-71 28-54 (246)
302 3aez_A Pantothenate kinase; tr 90.5 0.1 3.5E-06 54.6 2.5 26 45-70 87-113 (312)
303 2i3b_A HCR-ntpase, human cance 90.5 0.11 3.8E-06 50.2 2.5 22 49-70 3-24 (189)
304 3tui_C Methionine import ATP-b 90.4 0.13 4.6E-06 55.0 3.2 23 49-71 56-78 (366)
305 1z47_A CYSA, putative ABC-tran 90.3 0.14 4.7E-06 54.7 3.2 23 49-71 43-65 (355)
306 3fvq_A Fe(3+) IONS import ATP- 90.3 0.13 4.5E-06 54.9 3.0 23 49-71 32-54 (359)
307 3ec2_A DNA replication protein 90.2 0.3 1E-05 46.0 5.3 44 24-70 18-61 (180)
308 2qor_A Guanylate kinase; phosp 90.1 0.15 5.1E-06 49.4 3.1 24 47-70 12-35 (204)
309 1knq_A Gluconate kinase; ALFA/ 90.0 0.13 4.4E-06 48.2 2.5 22 49-70 10-31 (175)
310 2yyz_A Sugar ABC transporter, 90.0 0.15 5.1E-06 54.5 3.2 23 49-71 31-53 (359)
311 3lw7_A Adenylate kinase relate 90.0 0.17 5.9E-06 46.7 3.3 20 48-67 2-21 (179)
312 2it1_A 362AA long hypothetical 90.0 0.15 5.1E-06 54.5 3.2 23 49-71 31-53 (362)
313 1g29_1 MALK, maltose transport 89.9 0.15 5.3E-06 54.6 3.2 23 49-71 31-53 (372)
314 3rlf_A Maltose/maltodextrin im 89.9 0.15 5.3E-06 54.8 3.2 23 49-71 31-53 (381)
315 1p9r_A General secretion pathw 89.8 0.13 4.3E-06 56.3 2.5 22 49-70 169-190 (418)
316 1lw7_A Transcriptional regulat 89.7 0.12 4.3E-06 55.0 2.4 24 48-71 171-194 (365)
317 1rz3_A Hypothetical protein rb 89.7 0.22 7.6E-06 48.1 4.0 22 49-70 24-45 (201)
318 2jeo_A Uridine-cytidine kinase 89.7 0.14 4.7E-06 51.3 2.5 22 49-70 27-48 (245)
319 1v43_A Sugar-binding transport 89.6 0.17 5.7E-06 54.4 3.2 23 49-71 39-61 (372)
320 1f2t_A RAD50 ABC-ATPase; DNA d 89.6 0.17 5.7E-06 46.8 2.8 21 48-68 24-44 (149)
321 3uie_A Adenylyl-sulfate kinase 89.6 0.15 5E-06 49.3 2.5 23 48-70 26-48 (200)
322 2ewv_A Twitching motility prot 89.6 0.13 4.6E-06 55.1 2.5 22 49-70 138-159 (372)
323 1azs_C GS-alpha; complex (lyas 89.5 0.13 4.4E-06 55.8 2.3 69 148-229 217-298 (402)
324 1cke_A CK, MSSA, protein (cyti 89.5 0.17 5.6E-06 49.6 2.9 23 48-70 6-28 (227)
325 3kb2_A SPBC2 prophage-derived 89.4 0.21 7.2E-06 46.3 3.4 22 48-69 2-23 (173)
326 3d31_A Sulfate/molybdate ABC t 89.2 0.14 4.8E-06 54.5 2.2 23 49-71 28-50 (348)
327 4e22_A Cytidylate kinase; P-lo 88.9 0.15 5.3E-06 51.3 2.2 25 48-72 28-55 (252)
328 1xjc_A MOBB protein homolog; s 88.8 0.26 8.9E-06 46.8 3.6 24 47-70 4-27 (169)
329 3gd7_A Fusion complex of cysti 88.8 0.2 6.7E-06 54.2 3.0 23 49-71 49-71 (390)
330 1jjv_A Dephospho-COA kinase; P 88.6 0.23 7.9E-06 47.9 3.2 21 49-69 4-24 (206)
331 1sq5_A Pantothenate kinase; P- 88.6 0.17 5.7E-06 52.7 2.3 22 49-70 82-103 (308)
332 2qt1_A Nicotinamide riboside k 88.5 0.23 8E-06 47.9 3.2 27 44-70 17-44 (207)
333 2if2_A Dephospho-COA kinase; a 88.5 0.19 6.6E-06 48.3 2.5 21 49-69 3-23 (204)
334 2npi_A Protein CLP1; CLP1-PCF1 88.5 0.17 5.8E-06 55.9 2.4 26 46-71 137-162 (460)
335 2x8a_A Nuclear valosin-contain 88.4 0.29 9.8E-06 50.1 3.9 33 34-70 34-67 (274)
336 1oxx_K GLCV, glucose, ABC tran 88.4 0.14 4.7E-06 54.6 1.5 23 49-71 33-55 (353)
337 4b4t_K 26S protease regulatory 88.4 1.6 5.4E-05 47.6 9.9 33 34-70 196-229 (428)
338 1nij_A Hypothetical protein YJ 88.2 0.13 4.4E-06 53.9 1.2 25 47-71 4-28 (318)
339 2ehv_A Hypothetical protein PH 88.2 0.24 8.3E-06 48.9 3.1 21 49-69 32-52 (251)
340 4b4t_L 26S protease subunit RP 88.2 1.8 6.1E-05 47.3 10.2 33 34-70 205-238 (437)
341 3t61_A Gluconokinase; PSI-biol 88.1 0.21 7.3E-06 48.0 2.5 23 48-70 19-41 (202)
342 2jaq_A Deoxyguanosine kinase; 87.9 0.3 1E-05 46.6 3.4 22 49-70 2-23 (205)
343 3qf7_A RAD50; ABC-ATPase, ATPa 87.9 0.25 8.4E-06 52.9 3.1 22 47-68 23-44 (365)
344 2kjq_A DNAA-related protein; s 87.8 0.16 5.6E-06 46.9 1.5 25 46-70 35-59 (149)
345 2vp4_A Deoxynucleoside kinase; 87.7 0.18 6.3E-06 49.9 1.9 22 49-70 22-43 (230)
346 2xtz_A Guanine nucleotide-bind 87.7 0.1 3.6E-06 55.6 0.0 70 147-229 182-264 (354)
347 1ly1_A Polynucleotide kinase; 87.7 0.28 9.7E-06 45.7 3.1 21 49-69 4-24 (181)
348 1qhx_A CPT, protein (chloramph 87.3 0.3 1E-05 45.7 3.0 22 49-70 5-26 (178)
349 1u0l_A Probable GTPase ENGC; p 87.2 0.15 5.1E-06 53.0 0.8 66 149-230 64-130 (301)
350 3thx_A DNA mismatch repair pro 87.2 2.5 8.6E-05 50.6 11.5 19 49-67 664-682 (934)
351 1yqt_A RNAse L inhibitor; ATP- 86.7 0.33 1.1E-05 54.7 3.4 23 49-71 49-71 (538)
352 4b4t_M 26S protease regulatory 86.7 3.2 0.00011 45.3 11.1 33 34-70 205-238 (434)
353 1nks_A Adenylate kinase; therm 86.6 0.33 1.1E-05 45.7 2.9 21 49-69 3-23 (194)
354 1kht_A Adenylate kinase; phosp 86.6 0.34 1.2E-05 45.6 3.0 21 49-69 5-25 (192)
355 3vaa_A Shikimate kinase, SK; s 86.5 0.4 1.4E-05 46.1 3.4 22 48-69 26-47 (199)
356 3tqc_A Pantothenate kinase; bi 86.4 0.28 9.7E-06 51.5 2.5 22 49-70 94-115 (321)
357 1ixz_A ATP-dependent metallopr 86.4 0.44 1.5E-05 47.6 3.9 21 50-70 52-72 (254)
358 3trf_A Shikimate kinase, SK; a 86.3 0.42 1.4E-05 45.0 3.5 22 47-68 5-26 (185)
359 3ozx_A RNAse L inhibitor; ATP 86.2 0.34 1.1E-05 54.6 3.1 23 49-71 27-49 (538)
360 1y63_A LMAJ004144AAA protein; 86.0 0.44 1.5E-05 45.2 3.4 24 47-70 10-33 (184)
361 1yqt_A RNAse L inhibitor; ATP- 85.7 0.52 1.8E-05 53.0 4.4 23 49-71 314-336 (538)
362 2rhm_A Putative kinase; P-loop 85.7 0.38 1.3E-05 45.5 2.8 20 49-68 7-26 (193)
363 3qks_A DNA double-strand break 85.7 0.41 1.4E-05 46.5 3.1 21 48-68 24-44 (203)
364 3j16_B RLI1P; ribosome recycli 85.6 0.38 1.3E-05 55.0 3.2 23 49-71 105-127 (608)
365 3b60_A Lipid A export ATP-bind 85.6 0.37 1.3E-05 54.7 3.1 23 49-71 371-393 (582)
366 3b5x_A Lipid A export ATP-bind 85.5 0.39 1.3E-05 54.6 3.3 23 49-71 371-393 (582)
367 3euj_A Chromosome partition pr 85.5 0.33 1.1E-05 53.9 2.5 23 48-70 30-52 (483)
368 1via_A Shikimate kinase; struc 85.4 0.45 1.5E-05 44.6 3.1 22 48-69 5-26 (175)
369 3cm0_A Adenylate kinase; ATP-b 85.3 0.44 1.5E-05 44.8 3.1 20 49-68 6-25 (186)
370 2iyv_A Shikimate kinase, SK; t 85.2 0.43 1.5E-05 45.0 2.9 21 48-68 3-23 (184)
371 2w0m_A SSO2452; RECA, SSPF, un 85.2 0.37 1.3E-05 46.8 2.5 22 49-70 25-46 (235)
372 3bk7_A ABC transporter ATP-bin 85.2 0.54 1.8E-05 53.8 4.2 23 49-71 384-406 (607)
373 2v54_A DTMP kinase, thymidylat 85.2 0.44 1.5E-05 45.6 3.0 23 48-70 5-27 (204)
374 4b4t_J 26S protease regulatory 85.1 4.3 0.00015 43.8 11.0 33 34-70 172-205 (405)
375 2pez_A Bifunctional 3'-phospho 85.0 0.39 1.3E-05 45.2 2.5 22 49-70 7-28 (179)
376 3bk7_A ABC transporter ATP-bin 85.0 0.44 1.5E-05 54.5 3.3 23 49-71 119-141 (607)
377 3fb4_A Adenylate kinase; psych 85.0 0.48 1.6E-05 45.9 3.2 20 49-68 2-21 (216)
378 2plr_A DTMP kinase, probable t 84.9 0.47 1.6E-05 45.5 3.1 21 49-69 6-26 (213)
379 1gtv_A TMK, thymidylate kinase 84.8 0.24 8.1E-06 47.9 0.9 22 49-70 2-23 (214)
380 3iij_A Coilin-interacting nucl 84.8 0.48 1.6E-05 44.5 3.0 22 47-68 11-32 (180)
381 1iy2_A ATP-dependent metallopr 84.7 0.6 2E-05 47.4 3.9 21 50-70 76-96 (278)
382 2z0h_A DTMP kinase, thymidylat 84.7 0.48 1.6E-05 44.9 3.0 21 49-69 2-22 (197)
383 3qf4_B Uncharacterized ABC tra 84.6 0.37 1.3E-05 55.0 2.5 23 49-71 383-405 (598)
384 3ozx_A RNAse L inhibitor; ATP 84.6 0.44 1.5E-05 53.6 3.1 23 49-71 296-318 (538)
385 2yl4_A ATP-binding cassette SU 84.5 0.36 1.2E-05 55.1 2.3 23 49-71 372-394 (595)
386 2c95_A Adenylate kinase 1; tra 84.4 0.53 1.8E-05 44.6 3.2 21 48-68 10-30 (196)
387 3dl0_A Adenylate kinase; phosp 84.3 0.55 1.9E-05 45.5 3.3 21 49-69 2-22 (216)
388 4a82_A Cystic fibrosis transme 84.1 0.33 1.1E-05 55.2 1.8 23 49-71 369-391 (578)
389 3qf4_A ABC transporter, ATP-bi 84.0 0.38 1.3E-05 54.8 2.2 23 49-71 371-393 (587)
390 1e6c_A Shikimate kinase; phosp 84.0 0.55 1.9E-05 43.5 3.0 21 48-68 3-23 (173)
391 1cr0_A DNA primase/helicase; R 84.0 0.42 1.4E-05 49.0 2.3 22 49-70 37-58 (296)
392 2wwf_A Thymidilate kinase, put 84.0 0.5 1.7E-05 45.4 2.8 22 48-69 11-32 (212)
393 2pbr_A DTMP kinase, thymidylat 83.8 0.55 1.9E-05 44.3 3.0 21 49-69 2-22 (195)
394 1nn5_A Similar to deoxythymidy 83.6 0.53 1.8E-05 45.3 2.8 22 48-69 10-31 (215)
395 2pt5_A Shikimate kinase, SK; a 83.5 0.63 2.1E-05 42.9 3.2 20 49-68 2-21 (168)
396 2yvu_A Probable adenylyl-sulfa 83.5 0.6 2E-05 44.1 3.1 23 48-70 14-36 (186)
397 1tev_A UMP-CMP kinase; ploop, 83.3 0.61 2.1E-05 43.9 3.1 20 49-68 5-24 (196)
398 2bwj_A Adenylate kinase 5; pho 83.2 0.66 2.3E-05 44.0 3.3 22 48-69 13-34 (199)
399 1qhl_A Protein (cell division 83.1 0.12 4E-06 51.6 -2.2 22 50-71 30-51 (227)
400 3thx_B DNA mismatch repair pro 83.0 2.3 7.9E-05 50.8 8.5 22 49-70 675-696 (918)
401 1vht_A Dephospho-COA kinase; s 82.9 0.61 2.1E-05 45.3 3.0 21 49-69 6-26 (218)
402 4b4t_H 26S protease regulatory 82.9 4.8 0.00016 44.2 10.3 33 34-70 233-266 (467)
403 3qkt_A DNA double-strand break 82.8 0.61 2.1E-05 49.1 3.1 21 48-68 24-44 (339)
404 3j16_B RLI1P; ribosome recycli 82.6 0.61 2.1E-05 53.3 3.2 22 50-71 381-402 (608)
405 1zd8_A GTP:AMP phosphotransfer 82.5 0.71 2.4E-05 45.2 3.3 22 48-69 8-29 (227)
406 3n70_A Transport activator; si 82.3 1.9 6.5E-05 39.1 5.9 39 28-70 9-47 (145)
407 1uf9_A TT1252 protein; P-loop, 82.3 0.64 2.2E-05 44.3 2.8 23 48-70 9-31 (203)
408 2obl_A ESCN; ATPase, hydrolase 82.3 0.56 1.9E-05 49.8 2.5 23 49-71 73-95 (347)
409 4b4t_I 26S protease regulatory 82.1 5.6 0.00019 43.3 10.3 33 34-70 206-239 (437)
410 1jbk_A CLPB protein; beta barr 82.1 1.6 5.6E-05 40.2 5.5 24 47-70 43-66 (195)
411 1qf9_A UMP/CMP kinase, protein 82.0 0.67 2.3E-05 43.5 2.8 21 48-68 7-27 (194)
412 3nwj_A ATSK2; P loop, shikimat 81.9 0.6 2.1E-05 47.1 2.5 23 47-69 48-70 (250)
413 4aby_A DNA repair protein RECN 81.8 0.25 8.7E-06 53.2 -0.4 23 48-70 61-83 (415)
414 1fnn_A CDC6P, cell division co 81.7 1 3.6E-05 47.3 4.5 24 47-70 44-67 (389)
415 3auy_A DNA double-strand break 81.7 0.66 2.3E-05 49.5 2.9 21 48-68 26-46 (371)
416 1e4v_A Adenylate kinase; trans 81.7 0.77 2.6E-05 44.6 3.1 20 49-68 2-21 (214)
417 3ake_A Cytidylate kinase; CMP 81.7 0.82 2.8E-05 43.7 3.3 22 48-69 3-24 (208)
418 2cdn_A Adenylate kinase; phosp 81.5 0.76 2.6E-05 44.0 3.0 20 49-68 22-41 (201)
419 1tue_A Replication protein E1; 81.3 1.5 5.1E-05 43.0 5.0 40 22-69 38-80 (212)
420 2vli_A Antibiotic resistance p 81.3 0.57 2E-05 43.8 2.0 21 48-68 6-26 (183)
421 2cvh_A DNA repair and recombin 81.3 0.67 2.3E-05 44.7 2.5 21 49-69 22-42 (220)
422 1ukz_A Uridylate kinase; trans 81.2 0.82 2.8E-05 43.7 3.1 22 48-69 16-37 (203)
423 2ze6_A Isopentenyl transferase 81.1 0.79 2.7E-05 46.1 3.1 22 49-70 3-24 (253)
424 1e69_A Chromosome segregation 81.1 0.57 1.9E-05 48.9 2.1 23 48-70 25-47 (322)
425 2o5v_A DNA replication and rep 81.1 0.64 2.2E-05 49.5 2.5 23 48-70 27-49 (359)
426 2dpy_A FLII, flagellum-specifi 81.1 0.64 2.2E-05 50.9 2.5 23 49-71 159-181 (438)
427 1svm_A Large T antigen; AAA+ f 81.1 0.65 2.2E-05 49.9 2.5 22 49-70 171-192 (377)
428 1gvn_B Zeta; postsegregational 81.1 0.67 2.3E-05 47.7 2.6 45 24-70 11-56 (287)
429 1aky_A Adenylate kinase; ATP:A 81.0 0.92 3.1E-05 44.1 3.4 22 48-69 5-26 (220)
430 1n0w_A DNA repair protein RAD5 81.0 0.68 2.3E-05 45.4 2.5 26 49-74 26-51 (243)
431 1zak_A Adenylate kinase; ATP:A 81.0 0.78 2.7E-05 44.7 2.9 21 48-68 6-26 (222)
432 1w1w_A Structural maintenance 81.0 0.64 2.2E-05 50.6 2.5 24 48-71 27-50 (430)
433 3a4m_A L-seryl-tRNA(SEC) kinas 80.9 0.75 2.6E-05 46.4 2.8 22 48-69 5-26 (260)
434 1in4_A RUVB, holliday junction 80.8 0.71 2.4E-05 48.4 2.7 24 47-70 51-74 (334)
435 1m7g_A Adenylylsulfate kinase; 80.5 0.73 2.5E-05 44.6 2.5 23 48-70 26-48 (211)
436 2chg_A Replication factor C sm 80.5 1.7 6E-05 41.1 5.2 38 27-70 24-61 (226)
437 2yv5_A YJEQ protein; hydrolase 80.5 1 3.6E-05 46.5 3.8 53 177-230 72-125 (302)
438 2iw3_A Elongation factor 3A; a 79.6 0.62 2.1E-05 56.0 1.9 23 49-71 701-723 (986)
439 1zuh_A Shikimate kinase; alpha 79.5 1 3.4E-05 41.7 3.0 22 47-68 7-28 (168)
440 2xb4_A Adenylate kinase; ATP-b 79.3 1.1 3.7E-05 44.0 3.3 20 49-68 2-21 (223)
441 4f4c_A Multidrug resistance pr 79.1 0.62 2.1E-05 58.2 1.8 22 49-70 1107-1128(1321)
442 4f4c_A Multidrug resistance pr 79.1 0.87 3E-05 56.9 3.1 22 49-70 446-467 (1321)
443 2grj_A Dephospho-COA kinase; T 78.8 1.1 3.6E-05 43.3 3.0 22 47-68 12-33 (192)
444 1t9h_A YLOQ, probable GTPase E 78.5 2 6.7E-05 44.7 5.1 50 181-231 83-133 (307)
445 3tlx_A Adenylate kinase 2; str 78.4 1.2 4E-05 44.4 3.3 22 48-69 30-51 (243)
446 4eaq_A DTMP kinase, thymidylat 78.3 1.1 3.8E-05 44.3 3.1 22 49-70 28-49 (229)
447 3be4_A Adenylate kinase; malar 77.8 1.3 4.3E-05 43.2 3.3 21 48-68 6-26 (217)
448 1ak2_A Adenylate kinase isoenz 77.8 1.3 4.5E-05 43.6 3.4 22 48-69 17-38 (233)
449 1sxj_E Activator 1 40 kDa subu 77.7 0.91 3.1E-05 47.4 2.3 25 46-70 35-59 (354)
450 1nlf_A Regulatory protein REPA 77.6 0.94 3.2E-05 46.0 2.3 21 49-69 32-52 (279)
451 2p5t_B PEZT; postsegregational 77.3 0.78 2.7E-05 46.0 1.6 26 45-70 29-55 (253)
452 3syl_A Protein CBBX; photosynt 77.3 2.5 8.6E-05 43.0 5.6 34 37-70 57-90 (309)
453 2ius_A DNA translocase FTSK; n 77.2 1.1 3.8E-05 50.0 3.0 23 47-69 167-189 (512)
454 2w58_A DNAI, primosome compone 76.7 3.7 0.00013 38.9 6.3 44 25-70 34-77 (202)
455 3exa_A TRNA delta(2)-isopenten 76.5 1.5 5.2E-05 45.8 3.6 23 48-70 4-26 (322)
456 3g5u_A MCG1178, multidrug resi 76.4 1.1 3.6E-05 55.9 2.7 22 49-70 418-439 (1284)
457 1lv7_A FTSH; alpha/beta domain 76.3 1.1 3.9E-05 44.6 2.5 22 49-70 47-68 (257)
458 1uj2_A Uridine-cytidine kinase 76.2 1.3 4.5E-05 44.1 3.0 22 48-69 23-44 (252)
459 3cnl_A YLQF, putative uncharac 76.2 1.3 4.3E-05 45.0 2.8 49 176-230 13-61 (262)
460 1sxj_C Activator 1 40 kDa subu 76.0 2.3 7.9E-05 44.3 4.9 38 27-70 32-69 (340)
461 3r20_A Cytidylate kinase; stru 76.0 1.5 5.3E-05 43.6 3.3 21 48-68 10-30 (233)
462 1q3t_A Cytidylate kinase; nucl 75.8 1.5 5.1E-05 43.3 3.2 23 47-69 16-38 (236)
463 2f6r_A COA synthase, bifunctio 75.6 1.3 4.5E-05 45.2 2.8 20 49-68 77-96 (281)
464 1ltq_A Polynucleotide kinase; 75.6 1.4 4.9E-05 44.9 3.1 21 49-69 4-24 (301)
465 3bos_A Putative DNA replicatio 75.5 1.7 5.7E-05 42.2 3.4 39 26-70 37-75 (242)
466 2ga8_A Hypothetical 39.9 kDa p 75.4 3.2 0.00011 44.1 5.7 25 46-70 23-47 (359)
467 2iw3_A Elongation factor 3A; a 75.4 1.2 4.1E-05 53.5 2.7 23 49-71 463-485 (986)
468 3cr8_A Sulfate adenylyltranfer 75.4 0.84 2.9E-05 51.5 1.3 22 49-70 371-392 (552)
469 3a8t_A Adenylate isopentenyltr 75.3 2.2 7.5E-05 45.0 4.4 23 48-70 41-63 (339)
470 2qz4_A Paraplegin; AAA+, SPG7, 74.5 3.7 0.00013 40.5 5.8 23 48-70 40-62 (262)
471 2p65_A Hypothetical protein PF 74.5 1.4 4.9E-05 40.6 2.5 24 47-70 43-66 (187)
472 3ux8_A Excinuclease ABC, A sub 73.4 1.1 3.6E-05 51.9 1.5 20 49-68 350-369 (670)
473 4dzz_A Plasmid partitioning pr 72.7 3.1 0.00011 39.4 4.5 20 49-68 3-23 (206)
474 2qmh_A HPR kinase/phosphorylas 72.5 1.9 6.4E-05 42.1 2.8 23 48-70 35-57 (205)
475 3g5u_A MCG1178, multidrug resi 72.5 1.7 6E-05 54.0 3.3 23 49-71 1061-1083(1284)
476 2qen_A Walker-type ATPase; unk 72.0 4.1 0.00014 41.8 5.6 35 28-70 20-54 (350)
477 1a5t_A Delta prime, HOLB; zinc 71.9 28 0.00095 36.0 12.1 24 46-69 22-46 (334)
478 3sr0_A Adenylate kinase; phosp 71.9 2.3 7.7E-05 41.5 3.3 22 49-70 2-23 (206)
479 1njg_A DNA polymerase III subu 71.5 2.2 7.4E-05 40.9 3.1 38 28-70 31-68 (250)
480 3m6a_A ATP-dependent protease 71.5 2.8 9.7E-05 47.0 4.5 27 44-70 105-131 (543)
481 4ag6_A VIRB4 ATPase, type IV s 71.3 2 6.9E-05 45.8 3.1 26 46-71 34-59 (392)
482 3cf0_A Transitional endoplasmi 71.2 2.6 9E-05 43.2 3.8 22 49-70 51-72 (301)
483 2ocp_A DGK, deoxyguanosine kin 70.6 2.1 7.3E-05 42.2 2.9 22 49-70 4-25 (241)
484 1pzn_A RAD51, DNA repair and r 70.6 1.7 6E-05 45.9 2.3 23 49-71 133-155 (349)
485 3d3q_A TRNA delta(2)-isopenten 70.4 2.2 7.7E-05 44.9 3.1 22 49-70 9-30 (340)
486 3h4m_A Proteasome-activating n 70.4 4.1 0.00014 41.0 5.0 23 48-70 52-74 (285)
487 3zvl_A Bifunctional polynucleo 70.1 2.1 7.3E-05 46.3 3.0 22 48-69 259-280 (416)
488 2iut_A DNA translocase FTSK; n 70.1 2.2 7.5E-05 48.1 3.1 23 47-69 214-236 (574)
489 1p5z_B DCK, deoxycytidine kina 69.5 1.5 5.1E-05 44.0 1.4 23 48-70 25-47 (263)
490 3t15_A Ribulose bisphosphate c 69.5 4.1 0.00014 41.7 4.8 26 44-69 32-58 (293)
491 2dr3_A UPF0273 protein PH0284; 69.5 2.4 8.1E-05 41.4 2.9 21 49-69 25-45 (247)
492 1a7j_A Phosphoribulokinase; tr 69.4 1.4 4.8E-05 45.3 1.2 22 48-69 6-27 (290)
493 3co5_A Putative two-component 69.2 2.7 9.4E-05 37.9 3.1 21 50-70 30-50 (143)
494 3umf_A Adenylate kinase; rossm 68.8 2.7 9.3E-05 41.3 3.1 27 44-70 25-52 (217)
495 2r62_A Cell division protease 68.5 5.5 0.00019 39.6 5.5 21 50-70 47-67 (268)
496 2ce7_A Cell division protein F 68.0 4.9 0.00017 44.4 5.3 22 49-70 51-72 (476)
497 1tf7_A KAIC; homohexamer, hexa 67.9 2.1 7.1E-05 47.9 2.3 20 50-69 42-63 (525)
498 2dhr_A FTSH; AAA+ protein, hex 67.8 4.8 0.00016 44.7 5.2 22 49-70 66-87 (499)
499 3foz_A TRNA delta(2)-isopenten 67.8 2.7 9.1E-05 43.8 2.9 23 48-70 11-33 (316)
500 3crm_A TRNA delta(2)-isopenten 67.7 2.8 9.4E-05 43.9 3.1 22 49-70 7-28 (323)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=5e-111 Score=977.35 Aligned_cols=655 Identities=42% Similarity=0.670 Sum_probs=546.0
Q ss_pred CCCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccce
Q 005389 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGE 100 (699)
Q Consensus 21 ~~~~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~ 100 (699)
-++++++++|+|+|.++.+|....+++|+|+|||.+|+|||||||+|+|.+|||++.++|||||+++++.+.+ .+|+.
T Consensus 25 ~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~--~~~~~ 102 (772)
T 3zvr_A 25 GMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST--TEYAE 102 (772)
T ss_dssp CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECS--SCEEE
T ss_pred cHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCC--cchhh
Confidence 4589999999999999999998889999999999999999999999999999999999999999999998875 48999
Q ss_pred eecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHH
Q 005389 101 FLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMS 180 (699)
Q Consensus 101 ~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~ 180 (699)
+.+.+++.+.++++++.++..+++...|.+++++.+++.++|++|+.++++||||||+.+.+.++||.++...+.+++..
T Consensus 103 ~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~ 182 (772)
T 3zvr_A 103 FLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQ 182 (772)
T ss_dssp CSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHH
T ss_pred eeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCcccHHHHhcCCccccccCEEEEEcCChhhh
Q 005389 181 YIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 260 (699)
Q Consensus 181 yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~ 260 (699)
|+.+..++||+|++++.++..++.+.+++.+++.+.|+|+|+||+|+++++....+++.++.+++++||+.|+++|+.+.
T Consensus 183 yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G 262 (772)
T 3zvr_A 183 FVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDI 262 (772)
T ss_dssp HHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEES
T ss_pred HHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEeccccc
Confidence 99988789999999999999999879999999999999999999999988877777777777889999999999999988
Q ss_pred hccccHHHHHHHHHHhcCCCCcccCccccCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCCCCCCh-
Q 005389 261 MFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESK- 339 (699)
Q Consensus 261 ~~~~s~~~~~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~~- 339 (699)
.....+.+++..|..||..+|+|..+.++.|+..|.+.|++.|..||++.||.++++|+.++..++.++++||+++++.
T Consensus 263 ~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~~~~~~~~ 342 (772)
T 3zvr_A 263 DGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKNFRPDDP 342 (772)
T ss_dssp SSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred ccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhCCCCCCCh
Confidence 7777899999999999999999988889999999999999999999999999999999999999999999999776544
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccCCcccccccccccccchhHHhHHHHHHhhhccCCCCCCchHHHHHHHHhhcCCCCCC
Q 005389 340 AGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSAL 419 (699)
Q Consensus 340 ~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~f~~~l~~~~~~~~l~~~~I~~~i~n~~G~~~~l 419 (699)
.++..+|++++++|++.|.++|+|.++++.+.+|+|||||+|+|++.|+..+..+++.+.+++.+|+++|+|++|+++++
T Consensus 343 ~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n~~G~~~~l 422 (772)
T 3zvr_A 343 ARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGL 422 (772)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHHhCCCCCCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhhhhcccCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005389 420 FVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEM 499 (699)
Q Consensus 420 fvp~~~fe~Lvk~~i~~l~~Psl~c~~~V~~eL~~i~~~~~~~~~~rfp~L~~~i~~vv~~~l~e~~~~a~~~v~~li~~ 499 (699)
|+|+.+||.||++||++|++||++|++.||++|.+++++|. ++|.|||+|++++.++|.++|++++.+|+++|..||+|
T Consensus 423 f~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~-~~l~RfP~Lr~ei~~iv~~~Lre~~~~t~~~V~~LId~ 501 (772)
T 3zvr_A 423 FTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCS-EKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDI 501 (772)
T ss_dssp CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHG-GGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999995 79999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCCCCchHHHHHHHHhhhccCCCCCcccCCCCCCCCCCCCcccchhhhHhHhhhccccccCCC--------
Q 005389 500 EMDYINTSHPNFIGGSKAVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQG-------- 571 (699)
Q Consensus 500 E~~yinT~hpdF~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 571 (699)
|++||||+||||+++++|+..+.++.+.+.. . ......+.++||+...+.+.+.+++
T Consensus 502 E~ayintnHpdf~~~~~~~~~~~~~~~~~~~-------~--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 566 (772)
T 3zvr_A 502 ELAYMNTNHEDFIGFANAQQRSNQMNKKKTS-------G--------NQDEILVIRKGWLTINNIGIMKGGSKEYWFVLT 566 (772)
T ss_dssp HHTCCCTTCTTCCCC------------------------------------CCEEEEEEEEESSSCCC---CCEEEEEEE
T ss_pred hcCCCCCCChhhhchHHHHHHHHHHhhcccc-------c--------CCccccceeeeeeeecccccccCCCccceeecc
Confidence 9999999999999999998665543322110 0 0001126678888877766654432
Q ss_pred ------CCCccccccc-------CCCCCCCCCCCcccc---ccCCCCCCCCCCCCCCCCCCCCCCccchhhHHh-hhhcC
Q 005389 572 ------VRPTVEVEKV-------APAGNTSGSSWGISS---IFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFA-MIHLR 634 (699)
Q Consensus 572 ------~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 634 (699)
++++++.+++ ...++...||++..+ +|+. ..++.+ |++.+...+++++.+.++|.+ .++++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 644 (772)
T 3zvr_A 567 AENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNT-EQRNVY-KDYRQLELACETQEEVDSWKASFLRAG 644 (772)
T ss_dssp SSEEEEESSTTCCCEEEEEECTTEEEEEC-------CEEEEEEET-TSSCSB-TTBSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred ccccccccchhhhcccccccccccccchhhhccccccccccccCC-cccccc-chhhhhhhhccccccchhhHHhhhhcc
Confidence 2332222221 112233456664333 3443 445677 888888888988888877775 35667
Q ss_pred CCCccc---------------CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHh
Q 005389 635 EPPTIL---------------RPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNPELYYFLLI 695 (699)
Q Consensus 635 ~~p~~~---------------~~~~~~s~rE~~e~e~Ir~LI~SYF~IVRk~I~D~VPKAIMhfLVN~~~~~~~~~ 695 (699)
++|+.. .....+++++++|||+||+||+|||+||||||+|+|||||||||||++|+||+.|
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~q~e~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~e 720 (772)
T 3zvr_A 645 VYPERVGDKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSE 720 (772)
T ss_dssp CCBC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred cCCccccccccccccCCccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776543 2223467889999999999999999999999999999999999999999999887
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=3.1e-80 Score=715.20 Aligned_cols=483 Identities=31% Similarity=0.484 Sum_probs=404.9
Q ss_pred CCCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccce
Q 005389 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGE 100 (699)
Q Consensus 21 ~~~~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~ 100 (699)
+.+...++++ +.|.++.+|++..+++|+|+|||++||||||||++|+|. .+|+++|.||+++..+.+.+......|..
T Consensus 20 ~~~~~r~ll~-~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~~~~~ 97 (608)
T 3szr_A 20 YEEKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKWRG 97 (608)
T ss_dssp CHHHHHHHHH-HHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSSCCEE
T ss_pred HHHHHHHHHH-HHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCcccccee
Confidence 4555666775 556778899999999999999999999999999999999 56999999999999988776654445554
Q ss_pred eecCC--CccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHH
Q 005389 101 FLHLP--GKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMI 178 (699)
Q Consensus 101 ~~~~~--g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv 178 (699)
..... ...+.++..+.+.+........+.+.+++...+.+.+.+|..|+++|+|+||+...++++++.+....+.+++
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li 177 (608)
T 3szr_A 98 KVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLI 177 (608)
T ss_dssp EESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHH
T ss_pred EEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHH
Confidence 43322 2346677888888888777777888899999999999999999999999999999888888888888999999
Q ss_pred HHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCccc--HHHHhcCCccccccCEEEEEcCC
Q 005389 179 MSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTD--ARNLLLGKVIPLRLGYVGVVNRS 256 (699)
Q Consensus 179 ~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~--~~~~l~~~~~~l~lG~~~V~nrs 256 (699)
..|+.++.+++|+|++++.|.++++++++++.+++.|.+||+|+||+|+++.++. ..+++.|+.+++++||++|+||+
T Consensus 178 ~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v~nr~ 257 (608)
T 3szr_A 178 KKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRG 257 (608)
T ss_dssp HHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECCCCSC
T ss_pred HHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEEecCc
Confidence 9999999999999999999999999999999999999999999999999998875 45788999999999999999999
Q ss_pred hhhhhccccHHHHHHHHHHhcCCCCcccCccc--cCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCC
Q 005389 257 QEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGE 334 (699)
Q Consensus 257 ~~d~~~~~s~~~~~~~E~~fF~~~~~~~~~~~--~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~ 334 (699)
++|+..+.++.+++..|..||.+||||+.+.+ ++||++|+++|+++|.+||+++||.++++|+.++.+++.+|.+||+
T Consensus 258 ~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~ 337 (608)
T 3szr_A 258 QQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGV 337 (608)
T ss_dssp TTCTTTCCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred hhhcccCCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999998753 8999999999999999999999999999999999999999999999
Q ss_pred CCC-ChhhHHHHHHHHHHHHHHHHhhcccCCcccccccccccccchhHHhHHHHHHhhhccC----CCCCCchHHHHHHH
Q 005389 335 ITE-SKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVD----PCEDLTDDDIRTAI 409 (699)
Q Consensus 335 ~~~-~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~f~~~l~~~~----~~~~l~~~~I~~~i 409 (699)
+++ +..+++.+|++++++|++.|+++++|.+.. ...++ |+.+.+++.|..+...++ ++....+.+|++++
T Consensus 338 ~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~-~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~ 412 (608)
T 3szr_A 338 DIPEDENEKMFFLIDKVNAFNQDITALMQGEETV-GEEDI----RLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFE 412 (608)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHSSCCCC-CTTCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcC-CCccc----cHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHH
Confidence 765 456789999999999999999999998742 22333 444444444444443332 23345678999999
Q ss_pred HhhcCCCCCCCCCchhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhhhhcccCchhHHHHHHHHHHHHHHHhhhhH
Q 005389 410 QNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPS 489 (699)
Q Consensus 410 ~n~~G~~~~lfvp~~~fe~Lvk~~i~~l~~Psl~c~~~V~~eL~~i~~~~~~~~~~rfp~L~~~i~~vv~~~l~e~~~~a 489 (699)
+|++|+++|+|+|+.+||.||++||++|++|+++|++.|++++.+++..++.++|.|||+|++++.+++.++++++..+|
T Consensus 413 ~~~~g~~~~~f~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~~~f~rfp~L~~~~~~~i~~~~~~~~~~a 492 (608)
T 3szr_A 413 NQAAAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREG 492 (608)
T ss_dssp HHCCSCSSSCSSCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCC
Q 005389 490 ETMIGHIIEMEMDYINTSHPNF 511 (699)
Q Consensus 490 ~~~v~~li~~E~~yinT~hpdF 511 (699)
+++|+++|+||+.| +|++|+|
T Consensus 493 ~~~i~~li~mE~~~-~~~d~~~ 513 (608)
T 3szr_A 493 EKLIRLHFQMEQIV-YGAFQSS 513 (608)
T ss_dssp HHHHHHHHHHHHHC-CCC----
T ss_pred HHHHHHHHHHhhcc-ccCCccc
Confidence 99999999999976 5665544
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=7.9e-49 Score=426.42 Aligned_cols=319 Identities=47% Similarity=0.765 Sum_probs=287.8
Q ss_pred CCchHHHHHHHHHHHHHhCCCC--------CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccC
Q 005389 22 GGSVIPLVNKLQDIFAQLGSQS--------TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTK 93 (699)
Q Consensus 22 ~~~l~~~~~~L~d~~~~lg~~~--------~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~ 93 (699)
|++|++++|+|++++..+|... .+++|+|+|||.+|||||||||+|+|.+|+|++.++|||+|+++++...+
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~ 80 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID 80 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred ChhHHHHHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCC
Confidence 6889999999999999988531 26899999999999999999999999999999999999999999998765
Q ss_pred CC-cccceeecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHH
Q 005389 94 TD-EEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEA 172 (699)
Q Consensus 94 ~~-~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~ 172 (699)
.. ..|+.+.+.++..+.||++++.++..++....+.+.+|+.+++.+++++|..++++||||||+.+....+|+.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~ 160 (360)
T 3t34_A 81 DGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVK 160 (360)
T ss_dssp SCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHH
T ss_pred CcccceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHH
Confidence 43 57888888889999999999999999999999999999999999999999999999999999999888888888899
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCcccHHHHhcCCccccccCEEEE
Q 005389 173 RIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 252 (699)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V 252 (699)
.+..++..|+.+++++||+|.+++.+..+++++.+++.+++.+.|+|+|+||+|+++++....+++.+...++++||++|
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 240 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEE
T ss_pred HHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEE
Confidence 99999999999999999999899999888898999999999999999999999999988888888888889999999999
Q ss_pred EcCChhhhhccccHHHHHHHHHHhcCCCCcccCccccCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 005389 253 VNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASY 332 (699)
Q Consensus 253 ~nrs~~d~~~~~s~~~~~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~l 332 (699)
+++++++++...++.++...|..||.++|+|+.+..++|+++|+++|+++|.+||+++||.++.+|+.++.+++++|.+|
T Consensus 241 ~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~l 320 (360)
T 3t34_A 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRL 320 (360)
T ss_dssp CCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC----
T ss_pred EECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred CCCCCChh
Q 005389 333 GEITESKA 340 (699)
Q Consensus 333 g~~~~~~~ 340 (699)
|+++++..
T Consensus 321 g~~~~~~~ 328 (360)
T 3t34_A 321 GKPIAHGT 328 (360)
T ss_dssp --------
T ss_pred CCCCCCCH
Confidence 99887643
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=3.8e-47 Score=412.14 Aligned_cols=338 Identities=57% Similarity=0.909 Sum_probs=313.1
Q ss_pred CCCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccce
Q 005389 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGE 100 (699)
Q Consensus 21 ~~~~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~ 100 (699)
.+++|++++|+|+|.++.+|....+++|+|+|||.+|||||||||+|+|.+|+|++.++||++|+++++.+.+ .+|++
T Consensus 5 ~~~~l~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~--~~~~~ 82 (353)
T 2x2e_A 5 SMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNAT--TEYAE 82 (353)
T ss_dssp -CCSCHHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECS--SCEEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCC--cccee
Confidence 4788999999999999999988889999999999999999999999999999999999999999999988764 48999
Q ss_pred eecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHH
Q 005389 101 FLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMS 180 (699)
Q Consensus 101 ~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~ 180 (699)
|.+.+++.+++++++..+++.++++..|.+.+++...+.+++++|+..+++||||||+.+.+.++|+.++.+.+++++..
T Consensus 83 ~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~ 162 (353)
T 2x2e_A 83 FLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQ 162 (353)
T ss_dssp ETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHH
T ss_pred eeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHH
Confidence 99999999999999999999999999888899999999999999998999999999999988888999988899999999
Q ss_pred HhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCcccHHHHhcCCccccccCEEEEEcCChhhh
Q 005389 181 YIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 260 (699)
Q Consensus 181 yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~ 260 (699)
|+.+++++||+|++++.++.+++++.+++.+++.+.|+++|+||+|+++++.+..+++.++..++++||+.|.++|+.+.
T Consensus 163 ~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~ 242 (353)
T 2x2e_A 163 FVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDI 242 (353)
T ss_dssp HHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHH
T ss_pred HHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccc
Confidence 99999999999999999999999878999999999999999999999988776677888888899999999999999998
Q ss_pred hccccHHHHHHHHHHhcCCCCcccCccccCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 005389 261 MFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKA 340 (699)
Q Consensus 261 ~~~~s~~~~~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~~~ 340 (699)
.....+.+++..|..||..++.|.....++|+..|.+.|++.|..|+++.||.++++|+.++..++.+|.+||+.+++..
T Consensus 243 ~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~~~~~~~~ 322 (353)
T 2x2e_A 243 DGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDKH 322 (353)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred cccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCch
Confidence 88788999999999999999999999999999999999999999999999999999999999999999999997655432
Q ss_pred -h--HHHHHHHHHHHHHHHHhhc
Q 005389 341 -G--QGALLLNILSKYSEAFSSM 360 (699)
Q Consensus 341 -~--~~~~ll~~~~~f~~~~~~~ 360 (699)
+ ++.+|++++++|++.|+..
T Consensus 323 ~~~~~~~~~~~~~~~f~~~~~~~ 345 (353)
T 2x2e_A 323 GTDSRVDEMLRMYHALKEALSII 345 (353)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHh
Confidence 2 3489999999999999653
No 5
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=3.7e-39 Score=342.78 Aligned_cols=309 Identities=59% Similarity=0.988 Sum_probs=249.2
Q ss_pred CchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccC------CCc
Q 005389 23 GSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTK------TDE 96 (699)
Q Consensus 23 ~~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~------~~~ 96 (699)
++|++++|+|+|+++.+|.. .+++|+|+|||.+|||||||+|+|+|.+++|++.++||++|++++..+.+ ...
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~-~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~ 79 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSD-PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQ 79 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSC-TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCC
T ss_pred CchHHHHHHHHHHHHHcCCC-CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchh
Confidence 57999999999999999987 78999999999999999999999999999999999999999988877653 246
Q ss_pred ccceeecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHH
Q 005389 97 EYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRT 176 (699)
Q Consensus 97 ~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~ 176 (699)
.|+.+.+.+++.+.+++++.+++...+++..|.+.+++..++.+++++|...+++||||||+.+.+..+++.++.+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~ 159 (315)
T 1jwy_B 80 EWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRR 159 (315)
T ss_dssp CEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHH
T ss_pred hhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHH
Confidence 79999999999999999999999999998888889999999999999999999999999999876655666667778899
Q ss_pred HHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCcccHHHHhcCCccccccCEEEEEcCC
Q 005389 177 MIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRS 256 (699)
Q Consensus 177 lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs 256 (699)
++..|+..++++|++|.+++.++...+.+.+++.+++.+.++++|+||+|+.+.+....+.+.+...+++++|+.|.+.+
T Consensus 160 ~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s 239 (315)
T 1jwy_B 160 MVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRS 239 (315)
T ss_dssp HHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCC
T ss_pred HHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCC
Confidence 99999999998888877777777766667889999988999999999999998766556777766667778999999999
Q ss_pred hhhhhccccHHHHHHHHHHhcCCCCcccCccccCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 005389 257 QEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASY 332 (699)
Q Consensus 257 ~~d~~~~~s~~~~~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~l 332 (699)
...++....+.+.+..+..||..+++|..+..+.|+..|.+.|.+.+..|+++.+|.++.+|+..+.+++++|++|
T Consensus 240 a~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~~l~~~ 315 (315)
T 1jwy_B 240 QEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGELSTY 315 (315)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred hhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Confidence 9988778899999999999999988898888899999999999999999999999999999999999999999865
No 6
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=5e-37 Score=323.58 Aligned_cols=299 Identities=61% Similarity=0.990 Sum_probs=269.7
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCccccee
Q 005389 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEF 101 (699)
Q Consensus 22 ~~~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~ 101 (699)
|++|++++++|+|.|+.+|.....++|+|+|||.+|||||||+|+|+|.+++|++.++||++|+++++.+.. .+|+.+
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~--~~~~~~ 78 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST--TEYAEF 78 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECS--SCEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCC--cccchh
Confidence 678999999999999999988888999999999999999999999999999999999999999999887765 478888
Q ss_pred ecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 005389 102 LHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSY 181 (699)
Q Consensus 102 ~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~y 181 (699)
.+..|..+++++.+...+...+.+..|.+.+++...+.+++++|...+++||||||+.+...++++.++...+..++..|
T Consensus 79 ~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 158 (299)
T 2aka_B 79 LHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQF 158 (299)
T ss_dssp TTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHH
T ss_pred hhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHH
Confidence 88888889999999999988888888888999999999999999888999999999988776667777777899999999
Q ss_pred hcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCcccHHHHhcCCccccccCEEEEEcCChhhhh
Q 005389 182 IKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (699)
Q Consensus 182 i~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~ 261 (699)
++.++++||+|++++.++..++...+++.+++.+.++++|+||+|+.+.+....+.+.+....+++||+.+.+.|+.+..
T Consensus 159 ~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~ 238 (299)
T 2aka_B 159 VTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDID 238 (299)
T ss_dssp HTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTT
T ss_pred HcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhcc
Confidence 99999899999999999888887789999999999999999999999876656677777667778899999999998877
Q ss_pred ccccHHHHHHHHHHhcCCCCcccCccccCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 005389 262 FNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSAL 322 (699)
Q Consensus 262 ~~~s~~~~~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l 322 (699)
.-..+.+.+..|..||..++.|.....++|+..|.+.|.+.+..|+++.||.++++|+.++
T Consensus 239 gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~~ 299 (299)
T 2aka_B 239 GKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQL 299 (299)
T ss_dssp SCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhC
Confidence 6677888888999999888889999899999999999999999999999999999988753
No 7
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=296.75 Aligned_cols=171 Identities=15% Similarity=0.207 Sum_probs=136.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcccCCcccccccccccccchhHHhHHHHHHhhhccCCCCCCch----HHHHHHHHhhcC
Q 005389 339 KAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTD----DDIRTAIQNATG 414 (699)
Q Consensus 339 ~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~f~~~l~~~~~~~~l~~----~~I~~~i~n~~G 414 (699)
..++..+|+..++.|.+++.+.++|+... ..|++||...+++.|.+|...++....... .+|.+..++++|
T Consensus 3 ~~e~~~FLidkI~~F~~di~~l~~Gee~~-----~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rG 77 (271)
T 3ljb_A 3 ENEKMFFLIDKVNAFNQDITALMQGEETV-----GEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRG 77 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecc-----cCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccC
Confidence 34578899999999999999999998743 247899999999999999876655433333 566777779999
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhhhhcccCchhHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005389 415 PKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIG 494 (699)
Q Consensus 415 ~~~~lfvp~~~fe~Lvk~~i~~l~~Psl~c~~~V~~eL~~i~~~~~~~~~~rfp~L~~~i~~vv~~~l~e~~~~a~~~v~ 494 (699)
+++|+|+|+.+||.||++||++|++||++|++.|+++|.+++.+++.++|.|||+|++.+.++|.++++++..+|++||+
T Consensus 78 rELPgFv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~ 157 (271)
T 3ljb_A 78 RELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIR 157 (271)
T ss_dssp -----CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCCCCCch
Q 005389 495 HIIEMEMDYINTSHPNFIGGS 515 (699)
Q Consensus 495 ~li~~E~~yinT~hpdF~~~~ 515 (699)
++|+||+ +++|+|+.|.++.
T Consensus 158 ~~~~mE~-~vytqD~~Y~~~l 177 (271)
T 3ljb_A 158 LHFQMEQ-IVYCQDQVYRGAL 177 (271)
T ss_dssp HHHHHHT-SCC----------
T ss_pred HHHHHhc-ccccCCHHHHHHH
Confidence 9999999 8999999998654
No 8
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.76 E-value=9.4e-18 Score=196.36 Aligned_cols=190 Identities=20% Similarity=0.239 Sum_probs=123.9
Q ss_pred CchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceee
Q 005389 23 GSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFL 102 (699)
Q Consensus 23 ~~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~ 102 (699)
..+...+++|.+.+..+. -+.++|+|+|.+|+|||||||+|+|.+++|++..+||++++.+.+..... ....
T Consensus 49 ~~l~~~l~~L~~~~~~l~----~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~----~t~~ 120 (695)
T 2j69_A 49 LSLERDIEDITIASKNLQ----QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKK----VTIH 120 (695)
T ss_dssp CCCHHHHHHHHHHHHHHH----HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCE----EEEE
T ss_pred hHHHHHHHHHHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCe----EEEE
Confidence 345555566666555442 24578999999999999999999999999999999999999987643211 1111
Q ss_pred cCCCc--cccChhHHHHHHH---HHhhhhcCCCCCccccceEEEEecCCc---cceEEEeCCCCCCCCCCCCchHHHHHH
Q 005389 103 HLPGK--RFYDFSEIRREIQ---AQTDKEAGGNKGVSDKQIRLKIFSPHV---LDITLVDLPGITKVPVGEQPADIEARI 174 (699)
Q Consensus 103 ~~~g~--~~~d~~~i~~~i~---~~t~~~~~~~~~~s~~~i~l~i~~p~~---~~LtLVDlPGl~~~~~~~q~~di~~~i 174 (699)
...|. ...++..+...+. ...................++++.|.. .+++||||||+.... ..
T Consensus 121 ~~~g~~~~~~~~~~i~~~~~i~~~~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~----------~~ 190 (695)
T 2j69_A 121 FNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE----------AR 190 (695)
T ss_dssp ESSSCCCCEEEHHHHHHHSCCCHHHHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH----------TC
T ss_pred EcCCCcccccChhhhhhhhcCCHHHHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh----------hH
Confidence 11121 1222222221110 011111222334445667788888765 379999999986431 23
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCc
Q 005389 175 RTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 175 ~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
..++..|+.+++ ++|+|++++......+...+.+.+...+.++++|+||+|+....
T Consensus 191 ~~~~~~~i~~aD-~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 191 NELSLGYVNNCH-AILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp HHHHTHHHHSSS-EEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGG
T ss_pred HHHHHHHHHhCC-EEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECccccccc
Confidence 567788999998 77778888877766664334456666688999999999998653
No 9
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.47 E-value=4.3e-13 Score=133.90 Aligned_cols=129 Identities=22% Similarity=0.275 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCC-cccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHH
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFL-PRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~l-P~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (699)
-..|+|+|+|..|+|||||+|+|+|..++ ..+..+ +|+.....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~----------------------------------- 71 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYF----------------------------------- 71 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEE-----------------------------------
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEE-----------------------------------
Confidence 46789999999999999999999998732 222211 22221111
Q ss_pred hhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCe--eEEEEecCCCccc
Q 005389 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSC--LILAVTPANSDLA 200 (699)
Q Consensus 123 t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~--iIL~V~~a~~d~~ 200 (699)
.+.......++||||||+...... ....+.+..++..|+...+. ++++|+++...+.
T Consensus 72 ------------------~~~~~~~~~~~l~DtpG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~ 130 (223)
T 4dhe_A 72 ------------------SVGPAAEPVAHLVDLPGYGYAEVP---GAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLT 130 (223)
T ss_dssp ------------------EESCTTSCSEEEEECCCCCSSCCC---STHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC
T ss_pred ------------------EecCCCCCcEEEEcCCCCCcccCC---hhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCC
Confidence 111111236999999998765322 23355777888888876332 5777777776555
Q ss_pred chHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 201 NSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 201 ~~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
..+ ..+.+.+...+.++++|+||+|+.+.
T Consensus 131 ~~~-~~~~~~l~~~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 131 ELD-RRMIEWFAPTGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp HHH-HHHHHHHGGGCCCEEEEEECGGGSCH
T ss_pred HHH-HHHHHHHHhcCCCEEEEEeccccCCh
Confidence 443 45566665567899999999999864
No 10
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.46 E-value=1.4e-12 Score=126.56 Aligned_cols=125 Identities=22% Similarity=0.220 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (699)
-..++|+|+|..|+|||||+|+|+|..+......+ +|+....
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~------------------------------------- 63 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINF------------------------------------- 63 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEE-------------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEE-------------------------------------
Confidence 45789999999999999999999998743322221 1111100
Q ss_pred hhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCC--eeEEEEecCCCcccc
Q 005389 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPS--CLILAVTPANSDLAN 201 (699)
Q Consensus 124 ~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~--~iIL~V~~a~~d~~~ 201 (699)
... ...+.+|||||+..... +....+.++.+...|++..+ .++++|+++......
T Consensus 64 ----------------~~~----~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~ 120 (195)
T 3pqc_A 64 ----------------YLV----NSKYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQD 120 (195)
T ss_dssp ----------------EEE----TTTEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH
T ss_pred ----------------EEE----CCcEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCH
Confidence 000 12588999999765421 23334567778888887652 366677777665444
Q ss_pred hHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 202 SDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 202 ~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+ ..+.+.+...+.++++|+||+|+.+.
T Consensus 121 ~~-~~~~~~~~~~~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 121 SD-LMMVEWMKSLNIPFTIVLTKMDKVKM 148 (195)
T ss_dssp HH-HHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred HH-HHHHHHHHHcCCCEEEEEEChhcCCh
Confidence 43 34455555557899999999999854
No 11
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.44 E-value=1.6e-12 Score=137.64 Aligned_cols=125 Identities=22% Similarity=0.291 Sum_probs=85.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...|+++|.+|||||||+|+|+|..+...+..+ +|+..+...+
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~------------------------------------ 53 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVK------------------------------------ 53 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE------------------------------------
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEE------------------------------------
Confidence 346999999999999999999999875444332 3333221111
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
..+....++||||||+.+... ...+.+.+...+..|+..++ ++++|+++.......+ .
T Consensus 54 -----------------~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD-~il~VvD~~~~~~~~~-~ 111 (308)
T 3iev_A 54 -----------------NIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEAD-VILFMIDATEGWRPRD-E 111 (308)
T ss_dssp -----------------EETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCS-EEEEEEETTTBSCHHH-H
T ss_pred -----------------ecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCC-EEEEEEeCCCCCCchh-H
Confidence 011013689999999976431 13456678888899999998 6666667766555444 3
Q ss_pred HH-HHhhCCCCCcEEEeecccccCC
Q 005389 206 QI-AGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l-~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.+ ...+...+.++++|+||+|+.+
T Consensus 112 ~~~~~~l~~~~~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 112 EIYQNFIKPLNKPVIVVINKIDKIG 136 (308)
T ss_dssp HHHHHHTGGGCCCEEEEEECGGGSS
T ss_pred HHHHHHHHhcCCCEEEEEECccCCC
Confidence 33 5666556789999999999984
No 12
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.42 E-value=2.7e-12 Score=125.08 Aligned_cols=124 Identities=25% Similarity=0.310 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCC-c-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHH
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-I-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~-~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (699)
...++|+|+|..|+|||||+|+|+|..+.+.... + +|+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-------------------------------------- 62 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTL-------------------------------------- 62 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCE--------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeE--------------------------------------
Confidence 4578999999999999999999999875332111 0 11110
Q ss_pred hhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCC---CeeEEEEecCCCcc
Q 005389 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQP---SCLILAVTPANSDL 199 (699)
Q Consensus 123 t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~---~~iIL~V~~a~~d~ 199 (699)
....+ ...+.||||||+.... .+.+..+.+..+...|+... + ++++|+++....
T Consensus 63 ---------------~~~~~----~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~d~~~~~ 119 (195)
T 1svi_A 63 ---------------NFYII----NDELHFVDVPGYGFAK---VSKSEREAWGRMIETYITTREELK-AVVQIVDLRHAP 119 (195)
T ss_dssp ---------------EEEEE----TTTEEEEECCCBCCCS---SCHHHHHHHHHHHHHHHHHCTTEE-EEEEEEETTSCC
T ss_pred ---------------EEEEE----CCcEEEEECCCCCccc---cCHHHHHHHHHHHHHHHhhhhcCC-EEEEEEECCCCC
Confidence 01111 0258999999986542 23444567788888888866 5 666667776655
Q ss_pred cchHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 200 ANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 200 ~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
...+ ..+.+.+...+.++++|+||+|+.+.
T Consensus 120 ~~~~-~~~~~~~~~~~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 120 SNDD-VQMYEFLKYYGIPVIVIATKADKIPK 149 (195)
T ss_dssp CHHH-HHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred CHHH-HHHHHHHHHcCCCEEEEEECcccCCh
Confidence 4443 44455555467899999999999864
No 13
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.39 E-value=2.5e-12 Score=135.83 Aligned_cols=123 Identities=23% Similarity=0.229 Sum_probs=83.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...|+|||.+|+|||||+|+|+|..+..++..+ +|+..+...+
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~------------------------------------ 50 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGIL------------------------------------ 50 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEE------------------------------------
Confidence 456999999999999999999999875444332 3433211100
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
.. ....++||||||+.+.. ..+.+.+...+..|++.++ ++|+|+++...+...+ .
T Consensus 51 -----------------~~-~~~~l~l~DTpG~~~~~-----~~l~~~~~~~~~~~l~~ad-~il~VvD~~~~~~~~~-~ 105 (301)
T 1wf3_A 51 -----------------TE-GRRQIVFVDTPGLHKPM-----DALGEFMDQEVYEALADVN-AVVWVVDLRHPPTPED-E 105 (301)
T ss_dssp -----------------EE-TTEEEEEEECCCCCCCC-----SHHHHHHHHHHHHHTSSCS-EEEEEEETTSCCCHHH-H
T ss_pred -----------------Ee-CCcEEEEecCccccchh-----hHHHHHHHHHHHHHHhcCC-EEEEEEECCCCCChHH-H
Confidence 00 11368999999987532 3556677888899999998 6666666665544433 2
Q ss_pred HHHHhhCCC--CCcEEEeecccccCCC
Q 005389 206 QIAGIADPD--GYRTIGIITKLDIMDR 230 (699)
Q Consensus 206 ~l~~~~dp~--g~rti~VlTK~D~~~~ 230 (699)
.+.+.+... +.++++|+||+|+...
T Consensus 106 ~i~~~l~~~~~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 106 LVARALKPLVGKVPILLVGNKLDAAKY 132 (301)
T ss_dssp HHHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred HHHHHHHhhcCCCCEEEEEECcccCCc
Confidence 333344333 6899999999999864
No 14
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.38 E-value=4.6e-12 Score=131.74 Aligned_cols=136 Identities=21% Similarity=0.251 Sum_probs=79.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+|||.+|+|||||+|+|+|.+.++.+...++... ..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~-----~~------------------------------------ 47 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI-----KK------------------------------------ 47 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC-------------------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCccccc-----CC------------------------------------
Confidence 4699999999999999999999887655432111100 00
Q ss_pred CCCCCccccceEEEEecCC-ccceEEEeCCCCCCCCCC-CCchHHHHHHHHHHHHHhcC-------------CCeeEEEE
Q 005389 128 GGNKGVSDKQIRLKIFSPH-VLDITLVDLPGITKVPVG-EQPADIEARIRTMIMSYIKQ-------------PSCLILAV 192 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~-~~~LtLVDlPGl~~~~~~-~q~~di~~~i~~lv~~yi~~-------------~~~iIL~V 192 (699)
++........+.... ...++||||||+.+.... +.-..+...+.+....|+.. .|+++++|
T Consensus 48 ----t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i 123 (274)
T 3t5d_A 48 ----TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFI 123 (274)
T ss_dssp -----CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEE
T ss_pred ----ceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEe
Confidence 001111111121111 136999999999644221 11233333344444566654 56677777
Q ss_pred ecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 193 TPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 193 ~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.++...+...+ ..+.+.+.. +.++|+|+||+|++..
T Consensus 124 ~~~~~~~~~~d-~~~l~~l~~-~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 124 APSGHGLKPLD-IEFMKRLHE-KVNIIPLIAKADTLTP 159 (274)
T ss_dssp CSCCSSCCHHH-HHHHHHHTT-TSCEEEEESSGGGSCH
T ss_pred cCCCCCCCHHH-HHHHHHHhc-cCCEEEEEeccCCCCH
Confidence 77776666655 667777776 8999999999999854
No 15
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.35 E-value=2.2e-12 Score=147.04 Aligned_cols=164 Identities=16% Similarity=0.239 Sum_probs=98.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCC--cccCCccccceEEEEeeccCCCcccceeecCCCccc-cChhHHHHHHHHH
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL--PRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF-YDFSEIRREIQAQ 122 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~l--P~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~-~d~~~i~~~i~~~ 122 (699)
..|.|+|+|.+|+|||||||+|+|.++. +++..++|.+.+.+..... +... +|... .+... .+
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~------~~i~--~g~~l~~~~~~---~~--- 129 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGET------EGTV--PGNALVVDPEK---PF--- 129 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSS------SEEE--CCC----------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCc------cccc--CCceeeecCcc---cH---
Confidence 5689999999999999999999999875 5777777766554432211 0000 11110 00000 00
Q ss_pred hhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHH--HHHHHHHHhcCCCeeEEEEecCCC-cc
Q 005389 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEAR--IRTMIMSYIKQPSCLILAVTPANS-DL 199 (699)
Q Consensus 123 t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~--i~~lv~~yi~~~~~iIL~V~~a~~-d~ 199 (699)
..+...+..+....+++.+.++....++||||||+.+... ..+... +..++..|+..++ +||+|+++.. +.
T Consensus 130 -~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~----~~~~~~~~f~~~~~~~l~~aD-~il~VvDa~~~~~ 203 (550)
T 2qpt_A 130 -RKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAK----QRVSRGYDFPAVLRWFAERVD-LIILLFDAHKLEI 203 (550)
T ss_dssp ---------CCCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCS-EEEEEEETTSCCC
T ss_pred -HHHhhhcccccccceEEeccccccCCEEEEECcCCCCcch----hHHHHHhhHHHHHHHHHHhCC-EEEEEEeCCcCCC
Confidence 0001112234445556666555446899999999975311 111111 4567788899898 5556666655 34
Q ss_pred cchHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 200 ANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 200 ~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.. ....+++.+...+.++++|+||+|+.+.
T Consensus 204 ~~-~~~~~l~~l~~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 204 SD-EFSEAIGALRGHEDKIRVVLNKADMVET 233 (550)
T ss_dssp CH-HHHHHHHHTTTCGGGEEEEEECGGGSCH
T ss_pred CH-HHHHHHHHHHhcCCCEEEEEECCCccCH
Confidence 33 3356777777778899999999999864
No 16
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.33 E-value=5e-12 Score=128.41 Aligned_cols=128 Identities=21% Similarity=0.235 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCC--ccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHH
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (699)
-..++|+|||.+|+|||||+|+|+|..+...+.. .+|+.+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~---------------------------------- 72 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS---------------------------------- 72 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEE----------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEE----------------------------------
Confidence 3467899999999999999999999987544332 2333321111
Q ss_pred hhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch
Q 005389 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (699)
Q Consensus 123 t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (699)
+.+. ...++||||||+.+....+ .++.+.+...+..+.+.++ ++|+|++++ .+...
T Consensus 73 -----------------~~~~---~~~i~liDTpG~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~l~v~d~~-~~~~~ 128 (239)
T 3lxx_A 73 -----------------SSWK---ETELVVVDTPGIFDTEVPN--AETSKEIIRCILLTSPGPH-ALLLVVPLG-RYTEE 128 (239)
T ss_dssp -----------------EEET---TEEEEEEECCSCC-----C--HHHHHHHHHHHHHTTTCCS-EEEEEEETT-CCSSH
T ss_pred -----------------EEeC---CceEEEEECCCccCCCCCH--HHHHHHHHHHHHhcCCCCc-EEEEEeeCC-CCCHH
Confidence 0110 1258999999998654322 4455567777777777888 555555554 23332
Q ss_pred H--HHHHHHh-hC-CCCCcEEEeecccccCCC
Q 005389 203 D--ALQIAGI-AD-PDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 203 ~--~l~l~~~-~d-p~g~rti~VlTK~D~~~~ 230 (699)
+ .+..+.. +. ....++++|+||+|+++.
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 129 EHKATEKILKMFGERARSFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHHHHHHHHHHHHHHGGGEEEEEECGGGC--
T ss_pred HHHHHHHHHHHhhhhccceEEEEEeCCccCCc
Confidence 2 2222221 11 123589999999999864
No 17
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.32 E-value=1.4e-11 Score=137.52 Aligned_cols=202 Identities=17% Similarity=0.261 Sum_probs=116.5
Q ss_pred CCCCchHHHHHHHHHHHHHhCCC-CCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcc
Q 005389 20 PLGGSVIPLVNKLQDIFAQLGSQ-STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEE 97 (699)
Q Consensus 20 ~~~~~l~~~~~~L~d~~~~lg~~-~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~ 97 (699)
.-+..+-++++.+.+.+...... ..-..++|+++|.+++|||||+|+|+|.+....+..+ +|+.. .
T Consensus 167 ~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~------------~ 234 (456)
T 4dcu_A 167 THGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA------------V 234 (456)
T ss_dssp TTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CT------------T
T ss_pred ccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEE------------E
Confidence 34556667777766544322211 2235678999999999999999999988643222211 11110 0
Q ss_pred cceeecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHH
Q 005389 98 YGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTM 177 (699)
Q Consensus 98 ~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~l 177 (699)
. ..+.+.+ ..++||||||+.+........ +....+
T Consensus 235 ~---------------------------------------~~~~~~~---~~~~l~DT~G~~~~~~~~~~~---e~~~~~ 269 (456)
T 4dcu_A 235 D---------------------------------------TSFTYNQ---QEFVIVDTAGMRKKGKVYETT---EKYSVL 269 (456)
T ss_dssp S---------------------------------------EEEEETT---EEEEETTGGGTTTBTTBCCCC---SHHHHH
T ss_pred E---------------------------------------EEEEECC---ceEEEEECCCCCcCcccchHH---HHHHHH
Confidence 0 0111111 268999999987543211111 122222
Q ss_pred -HHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCcccHHHHhcCCccccccCEEEEEcCC
Q 005389 178 -IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRS 256 (699)
Q Consensus 178 -v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs 256 (699)
...|++.++ ++|+|+++...+..++ ..++..+...+.++++|+||+|+.+......+
T Consensus 270 ~~~~~~~~ad-~~llviD~~~~~~~~~-~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~-------------------- 327 (456)
T 4dcu_A 270 RALKAIDRSE-VVAVVLDGEEGIIEQD-KRIAGYAHEAGKAVVIVVNKWDAVDKDESTMK-------------------- 327 (456)
T ss_dssp HHHHHHHHCS-EEEEEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGSCCCSSHHH--------------------
T ss_pred HHHHHHhhCC-EEEEEEeCCCCcCHHH-HHHHHHHHHcCCCEEEEEEChhcCCCchHHHH--------------------
Confidence 346888888 6666677777666655 56666666678999999999999864322110
Q ss_pred hhhhhccccHHHHHHHHHHhcCCCCcc-cCccccCCcchHHHHHHHHHHHHHH
Q 005389 257 QEDIMFNRSIKDALVAEEKFFRSRPVY-NGLADRCGVPQLAKKLNQILVQHIK 308 (699)
Q Consensus 257 ~~d~~~~~s~~~~~~~E~~fF~~~~~~-~~~~~~~Gi~~L~~~L~~~L~~~i~ 308 (699)
.+.+.......+....|.+ .++.++.|+..|...|.+.+.++-+
T Consensus 328 --------~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 328 --------EFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp --------HHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred --------HHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 0111111111222223332 5667889999999988887765543
No 18
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.29 E-value=3.5e-11 Score=123.59 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc--cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHH
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (699)
....+|+|+|.+|||||||+|+|+|...++.+..+ +|+......+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~--------------------------------- 66 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQG--------------------------------- 66 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEE---------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEE---------------------------------
Confidence 34578999999999999999999998865554432 3332211100
Q ss_pred hhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch
Q 005389 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (699)
Q Consensus 123 t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (699)
.+ ....+.||||||+.+.... .......+...+..+++.++++| +|+++.. +...
T Consensus 67 ------------------~~---~~~~i~iiDTpG~~~~~~~--~~~~~~~i~~~~~~~~~~~d~il-~V~d~~~-~~~~ 121 (260)
T 2xtp_A 67 ------------------SW---GNREIVIIDTPDMFSWKDH--CEALYKEVQRCYLLSAPGPHVLL-LVTQLGR-YTSQ 121 (260)
T ss_dssp ------------------EE---TTEEEEEEECCGGGGSSCC--CHHHHHHHHHHHHHHTTCCSEEE-EEEETTC-CCHH
T ss_pred ------------------Ee---CCCEEEEEECcCCCCCCCC--HHHHHHHHHHHHHhcCCCCcEEE-EEEeCCC-CCHH
Confidence 00 0125899999999765322 22333345566667889998554 5555553 3332
Q ss_pred H--HHHHHHhhCCC--CCcEEEeec-ccccCC
Q 005389 203 D--ALQIAGIADPD--GYRTIGIIT-KLDIMD 229 (699)
Q Consensus 203 ~--~l~l~~~~dp~--g~rti~VlT-K~D~~~ 229 (699)
+ .++.+..+.+. +.++++|+| |+|+.+
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 122 DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 2 23344443222 467888888 999984
No 19
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.29 E-value=1.6e-11 Score=136.32 Aligned_cols=203 Identities=17% Similarity=0.271 Sum_probs=115.3
Q ss_pred CcCCCCCchHHHHHHHHHHHHHhCCC-CCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCC-ccccceEEEEeeccCC
Q 005389 17 SAVPLGGSVIPLVNKLQDIFAQLGSQ-STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKT 94 (699)
Q Consensus 17 ~~~~~~~~l~~~~~~L~d~~~~lg~~-~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~ 94 (699)
-++.-+..+-++++.+.+.+...... ..-..++|+|||.+|+|||||+|+|+|..+..++.. .+|+-..
T Consensus 144 iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~--------- 214 (436)
T 2hjg_A 144 ISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAV--------- 214 (436)
T ss_dssp CBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------C---------
T ss_pred EeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeee---------
Confidence 34445667777777777654321110 122457999999999999999999999875322221 1111110
Q ss_pred CcccceeecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHH
Q 005389 95 DEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARI 174 (699)
Q Consensus 95 ~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i 174 (699)
. ..+.+.+ ..+.||||||+.+...... .++ ..
T Consensus 215 ---~---------------------------------------~~~~~~~---~~~~l~DT~G~~~~~~~~~--~~e-~~ 246 (436)
T 2hjg_A 215 ---D---------------------------------------TSFTYNQ---QEFVIVDTAGMRKKGKVYE--TTE-KY 246 (436)
T ss_dssp ---C---------------------------------------EEEEETT---EEEEETTHHHHTCBTTBCC--CCS-HH
T ss_pred ---E---------------------------------------EEEEECC---eEEEEEECCCcCcCccccc--hHH-HH
Confidence 0 0111111 2489999999854432111 111 22
Q ss_pred HHH-HHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCcccHHHHhcCCccccccCEEEEE
Q 005389 175 RTM-IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVV 253 (699)
Q Consensus 175 ~~l-v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~ 253 (699)
..+ ...|++.++ ++++|.++......++ .+++..+...+.++++|+||+|+.+......+
T Consensus 247 ~~~~~~~~~~~ad-~~llv~D~~~~~s~~~-~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~----------------- 307 (436)
T 2hjg_A 247 SVLRALKAIDRSE-VVAVVLDGEEGIIEQD-KRIAGYAHEAGKAVVIVVNKWDAVDKDESTMK----------------- 307 (436)
T ss_dssp HHHHHHHHHHHCS-EEEEEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGSCCCTTHHH-----------------
T ss_pred HHHHHHHHHHhCC-EEEEEEcCCcCCcHHH-HHHHHHHHHcCCcEEEEEECccCCCcchHHHH-----------------
Confidence 222 346788888 6666667776666555 45666665668999999999999864321100
Q ss_pred cCChhhhhccccHHHHHHHHHHhcCCCCc-ccCccccCCcchHHHHHHHHHHHH
Q 005389 254 NRSQEDIMFNRSIKDALVAEEKFFRSRPV-YNGLADRCGVPQLAKKLNQILVQH 306 (699)
Q Consensus 254 nrs~~d~~~~~s~~~~~~~E~~fF~~~~~-~~~~~~~~Gi~~L~~~L~~~L~~~ 306 (699)
.+.+....+..+....|. +.++.++.|+..|.+.+.+.+.++
T Consensus 308 -----------~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 308 -----------EFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp -----------HHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence 011111222222222232 356678899999988887766543
No 20
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.29 E-value=9.1e-12 Score=138.32 Aligned_cols=123 Identities=20% Similarity=0.322 Sum_probs=75.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
+|.|++||.+|+|||||+|+|+|..+.-++.. | +++++..++.
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~-----~------g~T~d~~~~~-------------------------- 43 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDE-----E------GVTRDPVQDT-------------------------- 43 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC-------------------------CCSEEE--------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCceecCC-----C------CCccceeeEE--------------------------
Confidence 58999999999999999999999864212211 1 1111111111
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
+++.+ ..+.||||||+.... ...+.+.++.++..|+++++ +||+|+++...+...+ ..
T Consensus 44 -------------~~~~~---~~~~l~DT~G~~~~~----~~~~~~~~~~~~~~~~~~ad-~il~V~D~~~~~~~~d-~~ 101 (439)
T 1mky_A 44 -------------VEWYG---KTFKLVDTCGVFDNP----QDIISQKMKEVTLNMIREAD-LVLFVVDGKRGITKED-ES 101 (439)
T ss_dssp -------------EEETT---EEEEEEECTTTTSSG----GGCCCHHHHHHHHHHHTTCS-EEEEEEETTTCCCHHH-HH
T ss_pred -------------EEECC---eEEEEEECCCccccc----cchHHHHHHHHHHHHHHhCC-EEEEEEECCCCCCHHH-HH
Confidence 11111 258999999986431 11233567888899999998 6666667776555444 34
Q ss_pred HHHhhCCCCCcEEEeecccccC
Q 005389 207 IAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 207 l~~~~dp~g~rti~VlTK~D~~ 228 (699)
+++.+...+.++++|+||+|+.
T Consensus 102 i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 102 LADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp HHHHHHHHTCCEEEEEESCCSH
T ss_pred HHHHHHHcCCCEEEEEeCCCCc
Confidence 4444444578999999999985
No 21
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.27 E-value=1.2e-10 Score=117.14 Aligned_cols=126 Identities=14% Similarity=0.187 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
..++|+|+|..|+|||||+|+|+|..+.+.....+|+....-
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~-------------------------------------- 69 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVG-------------------------------------- 69 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEE--------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeee--------------------------------------
Confidence 467899999999999999999999875321111112111000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCccc--chH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA--NSD 203 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~--~~~ 203 (699)
.+.. ....+.||||||..+.+..+. ..+. . ..+..|...++ ++++|.+++.... ...
T Consensus 70 -------------~~~~---~~~~~~l~DtpG~~~~~~~~~-~~~~--~-~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~ 128 (228)
T 2qu8_A 70 -------------HFDH---KLNKYQIIDTPGLLDRAFENR-NTIE--M-TTITALAHING-VILFIIDISEQCGLTIKE 128 (228)
T ss_dssp -------------EEEE---TTEEEEEEECTTTTTSCGGGC-CHHH--H-HHHHHHHTSSE-EEEEEEETTCTTSSCHHH
T ss_pred -------------eeec---CCCeEEEEECCCCcCcccchh-hhHH--H-HHHHHhhcccc-EEEEEEecccccCcchHH
Confidence 0000 113689999999865321111 0111 1 12234566666 5555566654322 223
Q ss_pred HHHHHHhhCCC--CCcEEEeecccccCCC
Q 005389 204 ALQIAGIADPD--GYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 ~l~l~~~~dp~--g~rti~VlTK~D~~~~ 230 (699)
...+...+... +.++++|+||+|+.+.
T Consensus 129 ~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 129 QINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp HHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred HHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 34555555543 7899999999999864
No 22
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.26 E-value=8.9e-12 Score=138.26 Aligned_cols=123 Identities=22% Similarity=0.261 Sum_probs=76.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
.|.|++||.+|+|||||+|+|+|..+..++..+ +||-. .++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~------------~~~-------------------------- 44 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDR------------IYS-------------------------- 44 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------C------------EEE--------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccce------------EEE--------------------------
Confidence 589999999999999999999997652222211 12111 111
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
.+... ...+.||||||+.... .++.+.++.++..|+++++ ++|+|+++.......+ .
T Consensus 45 ---------------~~~~~-~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~ad-~il~vvD~~~~~~~~d-~ 101 (436)
T 2hjg_A 45 ---------------SAEWL-NYDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEAD-VIIFMVNGREGVTAAD-E 101 (436)
T ss_dssp ---------------ECTTC-SSCCEEEC--------------CHHHHHHHHHHHHHHHCS-EEEEEEETTTCSCHHH-H
T ss_pred ---------------EEEEC-CceEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCC-EEEEEEeCCCCCCHHH-H
Confidence 11111 1258999999986331 2256678888999999998 6666677776665544 4
Q ss_pred HHHHhhCCCCCcEEEeecccccCCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+++.+...+.++++|+||+|+.+.
T Consensus 102 ~~~~~l~~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 102 EVAKILYRTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HHHHHHTTCCSCEEEEEECCCC---
T ss_pred HHHHHHHHcCCCEEEEEECccCccc
Confidence 5777777778999999999999753
No 23
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.26 E-value=3.4e-11 Score=113.75 Aligned_cols=116 Identities=12% Similarity=0.085 Sum_probs=55.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|+|..+.+....+.|.+...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 41 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRS---------------------------------------- 41 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEE----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEE----------------------------------------
Confidence 4689999999999999999999886533322111111100
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
+.+. .....+.++||||.. ..+.+...|++.++++|+++ +.+....-.....
T Consensus 42 -------------~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~ 93 (166)
T 3q72_A 42 -------------IVVD-GEEASLMVYDIWEQD-------------GGRWLPGHCMAMGDAYVIVY-SVTDKGSFEKASE 93 (166)
T ss_dssp -------------EEET-TEEEEEEEEECC----------------------------CCEEEEEE-ETTCHHHHHHHHH
T ss_pred -------------EEEC-CEEEEEEEEECCCCc-------------cchhhhhhhhhhCCEEEEEE-ECCCHHHHHHHHH
Confidence 0000 011368899999943 33455667888888665554 4332221111111
Q ss_pred ----HHHhhCCCCCcEEEeecccccCCC
Q 005389 207 ----IAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 207 ----l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+.+.....+.++++|+||+|+.+.
T Consensus 94 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 94 LRVQLRRARQTDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp HHHHHHHCC---CCCEEEEEECTTCCSS
T ss_pred HHHHHHHhcCCCCCCEEEEEeccccccc
Confidence 222223357899999999999754
No 24
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.26 E-value=2e-11 Score=125.81 Aligned_cols=122 Identities=17% Similarity=0.207 Sum_probs=75.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
.|+|+|+|.+|+|||||+|+|+|..+ .++..+ +|.-.. .+
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~------------~~-------------------------- 41 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKK------------TG-------------------------- 41 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEE------------EE--------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEE------------EE--------------------------
Confidence 48999999999999999999999863 222111 111110 00
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHh--cCCCeeEEEEecCCCcccchH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYI--KQPSCLILAVTPANSDLANSD 203 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi--~~~~~iIL~V~~a~~d~~~~~ 203 (699)
.+.+. + ..+.||||||+.+....++.... ...+...|+ .+++ ++++|+++... ..
T Consensus 42 -------------~~~~~--~-~~~~lvDtpG~~~~~~~~~~~~~---~e~i~~~~~~~~~~d-~vi~VvDas~~---~~ 98 (256)
T 3iby_A 42 -------------EFLLG--E-HLIEITDLPGVYSLVANAEGISQ---DEQIAAQSVIDLEYD-CIINVIDACHL---ER 98 (256)
T ss_dssp -------------EEEET--T-EEEEEEECCCCSSCC------CH---HHHHHHHHHHHSCCS-EEEEEEEGGGH---HH
T ss_pred -------------EEEEC--C-eEEEEEeCCCcccccccccCCCH---HHHHHHHHHhhCCCC-EEEEEeeCCCc---hh
Confidence 11111 1 26899999999765422111122 234556677 7888 55555555542 22
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+.+..++...+.++++|+||+|+...
T Consensus 99 ~~~l~~~l~~~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 99 HLYLTSQLFELGKPVVVALNMMDIAEH 125 (256)
T ss_dssp HHHHHHHHTTSCSCEEEEEECHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEChhcCCc
Confidence 356677777778999999999999753
No 25
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.26 E-value=3e-11 Score=115.67 Aligned_cols=119 Identities=13% Similarity=0.242 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+|+|..++|||||+|+|++..+.+......+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 45 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADF----------------------------------------- 45 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSC-----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEE-----------------------------------------
Confidence 346899999999999999999998875322111100000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH-
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA- 204 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~- 204 (699)
....+.+.+.....+.||||||.. .++.+...|++.++++|++ .++.....-...
T Consensus 46 ----------~~~~~~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~ 101 (182)
T 1ky3_A 46 ----------LTKEVTVDGDKVATMQVWDTAGQE-------------RFQSLGVAFYRGADCCVLV-YDVTNASSFENIK 101 (182)
T ss_dssp ----------EEEEECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEEE-EETTCHHHHHTHH
T ss_pred ----------EEEEEEEcCCcEEEEEEEECCCCh-------------HhhhhhHHHhhcCCEEEEE-EECCChHHHHHHH
Confidence 000111111112468999999932 3445667788999855554 454433221111
Q ss_pred --HHHHHh-h---CCCCCcEEEeecccccCC
Q 005389 205 --LQIAGI-A---DPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 --l~l~~~-~---dp~g~rti~VlTK~D~~~ 229 (699)
+..+.. . ...+.++++|+||+|+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 102 SWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp HHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred HHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 211222 1 235789999999999964
No 26
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.26 E-value=1.9e-11 Score=114.83 Aligned_cols=122 Identities=20% Similarity=0.230 Sum_probs=73.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
.|+|+|+|..++|||||+|+|++..+...+..+ +|+...
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 40 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLK---------------------------------------- 40 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CCE----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecce----------------------------------------
Confidence 478999999999999999999988642222211 111110
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
...+.+ .. ..+.||||||...... ....+......|++.++++| +|.++.......+ .
T Consensus 41 -----------~~~~~~--~~-~~~~l~Dt~G~~~~~~------~~~~~~~~~~~~~~~~~~~i-~v~d~~~~~~~~~-~ 98 (161)
T 2dyk_A 41 -----------EGVVET--DR-GRFLLVDTGGLWSGDK------WEKKIQEKVDRALEDAEVVL-FAVDGRAELTQAD-Y 98 (161)
T ss_dssp -----------EEEEEE--TT-EEEEEEECGGGCSSSS------CCHHHHHHHHHHTTTCSEEE-EEEESSSCCCHHH-H
T ss_pred -----------EEEEEe--CC-ceEEEEECCCCCCccc------hHHHHHHHHHHHHHhCCEEE-EEEECCCcccHhH-H
Confidence 001111 11 2589999999865321 12355677778999998554 5555554443332 2
Q ss_pred HHHHhhCCCCCcEEEeecccccCCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+.+.+...+.++++|+||+|+.+.
T Consensus 99 ~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 99 EVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp HHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred HHHHHHHhcCCCEEEEEECcccccc
Confidence 2333333246899999999999864
No 27
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.25 E-value=1.2e-10 Score=112.56 Aligned_cols=123 Identities=20% Similarity=0.345 Sum_probs=75.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCC-ccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
+++|+|+|..|+|||||+|+|++..+ +.+.. .+|+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~----------------------------------------- 38 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKI----------------------------------------- 38 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSC-----------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCcccee-----------------------------------------
Confidence 47899999999999999999999875 32221 111111
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcC-CCe--eEEEEecCCCcccc-
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQ-PSC--LILAVTPANSDLAN- 201 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~-~~~--iIL~V~~a~~d~~~- 201 (699)
..+.+. .+.+|||||+..... .+....+.++.+...|++. .+. +++.|+++......
T Consensus 39 ------------~~~~~~-----~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~ 99 (190)
T 2cxx_A 39 ------------IEIEWK-----NHKIIDMPGFGFMMG--LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEII 99 (190)
T ss_dssp ------------EEEEET-----TEEEEECCCBSCCTT--SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHH
T ss_pred ------------EEEecC-----CEEEEECCCcccccc--CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHH
Confidence 111111 589999999764322 1233455677788888775 443 44556665432110
Q ss_pred h---------HHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 202 S---------DALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 202 ~---------~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
. ....+.+.+...+.++++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 100 KRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN 137 (190)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC
T ss_pred HhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc
Confidence 0 0122334444457899999999999865
No 28
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=2.9e-11 Score=115.80 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=69.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+.+....+++.......
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~-------------------------------------- 51 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNK-------------------------------------- 51 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEE--------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEE--------------------------------------
Confidence 457999999999999999999998764433322221111000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc---hH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SD 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~ 203 (699)
.+.+.+ ....+.||||||.. ..+.+...|+++++++|+ |.++.....- ..
T Consensus 52 ------------~~~~~~-~~~~~~~~Dt~G~~-------------~~~~~~~~~~~~~d~ii~-v~d~~~~~s~~~~~~ 104 (180)
T 2g6b_A 52 ------------VLDVDG-VKVKLQMWDTAGQE-------------RFRSVTHAYYRDAHALLL-LYDVTNKASFDNIQA 104 (180)
T ss_dssp ------------EEEETT-EEEEEEEEECCCC---------------------CCGGGCSEEEE-EEETTCHHHHHTHHH
T ss_pred ------------EEEECC-EEEEEEEEeCCCcH-------------HHHHHHHHHccCCCEEEE-EEECCCHHHHHHHHH
Confidence 001100 01368999999943 344566778899985555 4555443221 12
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+..+....+.+.++++|+||+|+.+.
T Consensus 105 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 105 WLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp HHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred HHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 234445555567899999999999863
No 29
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.24 E-value=8.5e-12 Score=139.23 Aligned_cols=125 Identities=22% Similarity=0.247 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (699)
...|.|+|||.+|+|||||+|+|+|..+..+...+ +|+..
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~--------------------------------------- 61 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDR--------------------------------------- 61 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------C---------------------------------------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeE---------------------------------------
Confidence 45899999999999999999999997653222211 11111
Q ss_pred hhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH
Q 005389 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (699)
Q Consensus 124 ~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~ 203 (699)
....+... ...+.||||||+.... ..+.+.++.++..|++.++ +||+|+++...+...+
T Consensus 62 --------------~~~~~~~~-~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad-~il~VvD~~~~~~~~d 120 (456)
T 4dcu_A 62 --------------IYSSAEWL-NYDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEAD-VIIFMVNGREGVTAAD 120 (456)
T ss_dssp --------------EEEECTTC-SSCCEEECCCC-----------CCHHHHHHHHHHHHHHCS-EEEEEEESSSCSCHHH
T ss_pred --------------EEEEEEEC-CceEEEEECCCCCCcc-----hHHHHHHHHHHHhhHhhCC-EEEEEEeCCCCCChHH
Confidence 11111111 1369999999987321 2345688888999999998 6666677776665555
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
..+++.+...+.++++|+||+|+.+.
T Consensus 121 -~~l~~~l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 121 -EEVAKILYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp -HHHHHHHTTCCSCEEEEEECC-----
T ss_pred -HHHHHHHHHcCCCEEEEEECccchhh
Confidence 56777787788999999999998753
No 30
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.24 E-value=3.5e-11 Score=117.57 Aligned_cols=117 Identities=16% Similarity=0.214 Sum_probs=69.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+.+......+...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~------------------------------------------ 63 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDF------------------------------------------ 63 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEE------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeE------------------------------------------
Confidence 35799999999999999999999875322111100000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---H
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (699)
....+.+.+ ....+.||||||.. .++.+...|++.++++| +|.+++....-. .
T Consensus 64 ---------~~~~~~~~~-~~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii-lV~D~~~~~s~~~~~~ 119 (192)
T 2il1_A 64 ---------KIKTVELRG-KKIRLQIWDTAGQE-------------RFNSITSAYYRSAKGII-LVYDITKKETFDDLPK 119 (192)
T ss_dssp ---------EEEEEEETT-EEEEEEEEEECCSG-------------GGHHHHHHHHHHCSEEE-EEEETTCHHHHHTHHH
T ss_pred ---------EEEEEEECC-eEEEEEEEeCCCcH-------------HHHHHHHHHhcCCCEEE-EEEECcCHHHHHHHHH
Confidence 000111111 11368999999943 33456678888888555 455555432221 2
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
++..++...+.+.++++|+||+|+.+
T Consensus 120 ~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 120 WMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECccccc
Confidence 23455666666899999999999964
No 31
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.23 E-value=2.3e-11 Score=124.67 Aligned_cols=126 Identities=17% Similarity=0.140 Sum_probs=70.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc--cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
-.+|+|||.+|+|||||+|+|+|..+...+... +|+.+......
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~---------------------------------- 66 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRR---------------------------------- 66 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEE----------------------------------
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEE----------------------------------
Confidence 357999999999999999999999876544322 44433221110
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH-
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD- 203 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~- 203 (699)
+ ....++||||||+.+...... ......+......+.+.++ ++|+|++++. +...+
T Consensus 67 -----------------~---~~~~i~liDTPG~~~~~~~~~-~~~~~~i~~~~~~~~~~~d-~il~V~d~~~-~~~~~~ 123 (247)
T 3lxw_A 67 -----------------W---DKCHVEVVDTPDIFSSQVSKT-DPGCEERGHCYLLSAPGPH-ALLLVTQLGR-FTAQDQ 123 (247)
T ss_dssp -----------------E---TTEEEEEEECCSCSSTTHHHH-STTSHHHHHHHHHHTTCCS-EEEEEEETTB-CCHHHH
T ss_pred -----------------E---CCcEEEEEECCCCCCCCCCcH-HHHHHHHHHHHHhcCCCCC-EEEEEEeCCC-CCHHHH
Confidence 0 013589999999975421100 0011122222223348888 5556666653 43333
Q ss_pred -HHHHHHhhCCC---CCcEEEeecccccCC
Q 005389 204 -ALQIAGIADPD---GYRTIGIITKLDIMD 229 (699)
Q Consensus 204 -~l~l~~~~dp~---g~rti~VlTK~D~~~ 229 (699)
.++.++.+-.. +.++|+|.||.|+.+
T Consensus 124 ~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 124 QAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 23444443221 578999999999965
No 32
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.23 E-value=7.4e-11 Score=115.80 Aligned_cols=166 Identities=16% Similarity=0.178 Sum_probs=95.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+.+.... |.. +...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~-~~~~-------------------------------------- 46 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVS--TVG-IDFK-------------------------------------- 46 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCC--CCS-EEEE--------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--ccc-eeEE--------------------------------------
Confidence 46899999999999999999999876332111 100 0000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---H
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (699)
...+.+. .....+.||||||.. .++.+...|+++++++| +|.++.....-. .
T Consensus 47 ----------~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~ 101 (203)
T 1zbd_A 47 ----------VKTIYRN-DKRIKLQIWDTAGLE-------------RYRTITTAYYRGAMGFI-LMYDITNEESFNAVQD 101 (203)
T ss_dssp ----------EEEEEET-TEEEEEEEEEECCSG-------------GGHHHHHTTGGGCSEEE-EEEETTCHHHHHHHHH
T ss_pred ----------EEEEEEC-CeEEEEEEEECCCch-------------hhcchHHHhhcCCCEEE-EEEECcCHHHHHHHHH
Confidence 0001110 011368999999964 23456778999998554 455554332211 1
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCCcccHHHHhcCCccccccCEEEEEcCChhhhhccccHHHHHHHHHHhcCCCCc-
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPV- 282 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~~~~s~~~~~~~E~~fF~~~~~- 282 (699)
++..+......+.++++|+||+|+.+.... +..+.......+ . .+.
T Consensus 102 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-------------------------------~~~~~~~~~~~~-~-~~~~ 148 (203)
T 1zbd_A 102 WSTQIKTYSWDNAQVLLVGNKCDMEDERVV-------------------------------SSERGRQLADHL-G-FEFF 148 (203)
T ss_dssp HHHHHHHHSCSSCEEEEEEECTTCTTSCCS-------------------------------CHHHHHHHHHHH-T-CEEE
T ss_pred HHHHHHHhcCCCCCEEEEEECcccCccccc-------------------------------CHHHHHHHHHHC-C-CeEE
Confidence 233344444457899999999999753210 011111111111 0 122
Q ss_pred ccCccccCCcchHHHHHHHHHHHHHHhhh
Q 005389 283 YNGLADRCGVPQLAKKLNQILVQHIKAIL 311 (699)
Q Consensus 283 ~~~~~~~~Gi~~L~~~L~~~L~~~i~~~L 311 (699)
..++.++.|+..|...|.+.+.+++...+
T Consensus 149 ~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~ 177 (203)
T 1zbd_A 149 EASAKDNINVKQTFERLVDVICEKMSESL 177 (203)
T ss_dssp ECBTTTTBSSHHHHHHHHHHHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 24556788999999888887776665543
No 33
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.22 E-value=1.8e-11 Score=117.07 Aligned_cols=166 Identities=15% Similarity=0.151 Sum_probs=90.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
..++|+|+|..++|||||+|+|++..+.+......|.....
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~--------------------------------------- 48 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKI--------------------------------------- 48 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEE---------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEE---------------------------------------
Confidence 46789999999999999999999987632221111111000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
..+.+.+ ....+.||||||.... ..+...|++.++++ ++|.+++....-....
T Consensus 49 ------------~~~~~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~ 101 (181)
T 3tw8_B 49 ------------RTVEING-EKVKLQIWDTAGQERF-------------RTITSTYYRGTHGV-IVVYDVTSAESFVNVK 101 (181)
T ss_dssp ------------EEEEETT-EEEEEEEEEETTGGGC-------------SSCCGGGGTTCSEE-EEEEETTCHHHHHHHH
T ss_pred ------------EEEEECC-EEEEEEEEcCCCchhh-------------hhhHHHHhccCCEE-EEEEECCCHHHHHHHH
Confidence 0111110 0135899999995322 23344688888854 4555555432222222
Q ss_pred HHHHhhC--CCCCcEEEeecccccCCCcccHHHHhcCCccccccCEEEEEcCChhhhhccccHHHHHHHHHHhcCCCCcc
Q 005389 206 QIAGIAD--PDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVY 283 (699)
Q Consensus 206 ~l~~~~d--p~g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~~~~s~~~~~~~E~~fF~~~~~~ 283 (699)
.+...+. ....++++|+||+|+.+.... +..++......+. .+.+
T Consensus 102 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-------------------------------~~~~~~~~~~~~~--~~~~ 148 (181)
T 3tw8_B 102 RWLHEINQNCDDVCRILVGNKNDDPERKVV-------------------------------ETEDAYKFAGQMG--IQLF 148 (181)
T ss_dssp HHHHHHHHHCTTSEEEEEEECTTCGGGCCS-------------------------------CHHHHHHHHHHHT--CCEE
T ss_pred HHHHHHHHhCCCCCEEEEEECCCCchhccc-------------------------------CHHHHHHHHHHcC--CeEE
Confidence 2222221 125889999999998643210 1111111111111 1222
Q ss_pred -cCccccCCcchHHHHHHHHHHHHHHhh
Q 005389 284 -NGLADRCGVPQLAKKLNQILVQHIKAI 310 (699)
Q Consensus 284 -~~~~~~~Gi~~L~~~L~~~L~~~i~~~ 310 (699)
.++.++.|+..|.+.|.+.+.+.-++.
T Consensus 149 ~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 149 ETSAKENVNVEEMFNCITELVLRAKKDN 176 (181)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 456678899999888888776655544
No 34
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.22 E-value=4.6e-11 Score=116.50 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=69.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
...++|+|+|..++|||||+|+|++..+......+++... ..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~-~~------------------------------------- 56 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN-VE------------------------------------- 56 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE-EE-------------------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee-EE-------------------------------------
Confidence 4567899999999999999999999876332222111100 00
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (699)
.+ .. ....+.||||||.. .++.+...|+++++++| +|.++.....-...
T Consensus 57 --------------~~--~~-~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~ii-~v~D~~~~~s~~~~ 105 (199)
T 4bas_A 57 --------------TF--EK-GRVAFTVFDMGGAK-------------KFRGLWETYYDNIDAVI-FVVDSSDHLRLCVV 105 (199)
T ss_dssp --------------EE--EE-TTEEEEEEEECCSG-------------GGGGGGGGGCTTCSEEE-EEEETTCGGGHHHH
T ss_pred --------------EE--Ee-CCEEEEEEECCCCH-------------hHHHHHHHHHhcCCEEE-EEEECCcHHHHHHH
Confidence 00 00 11368999999964 23445567899998555 45555543222222
Q ss_pred HHHHHhhCC-----------CCCcEEEeecccccCCC
Q 005389 205 LQIAGIADP-----------DGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 l~l~~~~dp-----------~g~rti~VlTK~D~~~~ 230 (699)
......+.. .+.++++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 106 KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 222222211 26899999999999864
No 35
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.22 E-value=1.3e-10 Score=115.41 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=46.1
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCC----CCCcEEEeecc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADP----DGYRTIGIITK 224 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp----~g~rti~VlTK 224 (699)
.+.|||||| .+.++.+...|++.+++ +++|.++.....-.....+...+.. .+.++++|+||
T Consensus 85 ~l~l~Dt~G-------------~~~~~~~~~~~~~~~d~-iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK 150 (217)
T 2f7s_A 85 HLQLWDTAG-------------QERFRSLTTAFFRDAMG-FLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNK 150 (217)
T ss_dssp EEEEEEEES-------------HHHHHHHHHHHHTTCCE-EEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEEC
T ss_pred EEEEEECCC-------------cHhHHhHHHHHhcCCCE-EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEEC
Confidence 689999999 23567778889999985 4555555543333333344444543 46899999999
Q ss_pred cccCC
Q 005389 225 LDIMD 229 (699)
Q Consensus 225 ~D~~~ 229 (699)
+|+.+
T Consensus 151 ~Dl~~ 155 (217)
T 2f7s_A 151 ADLPD 155 (217)
T ss_dssp TTCGG
T ss_pred Ccccc
Confidence 99965
No 36
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.21 E-value=5.3e-12 Score=133.27 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=78.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (699)
...+.|+|||.+|+|||||+|+|+|..+.+++..+ +|+....- .
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~g------------i----------------------- 50 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVG------------I----------------------- 50 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEE------------E-----------------------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEE------------E-----------------------
Confidence 34457999999999999999999999764433222 33322110 0
Q ss_pred hhhcCCCCCccccceEEEEecCCccceEEEeCCCCC-CCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch
Q 005389 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGIT-KVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (699)
Q Consensus 124 ~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~-~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (699)
+.. ....++++||||+. ... ..+...+...+..++...+ ++++|+++.. +...
T Consensus 51 ------------------~~~-~~~~i~~iDTpG~~~~~~-----~~l~~~~~~~~~~~l~~~D-~vl~Vvd~~~-~~~~ 104 (301)
T 1ega_A 51 ------------------HTE-GAYQAIYVDTPGLHMEEK-----RAINRLMNKAASSSIGDVE-LVIFVVEGTR-WTPD 104 (301)
T ss_dssp ------------------EEE-TTEEEEEESSSSCCHHHH-----HHHHHHHTCCTTSCCCCEE-EEEEEEETTC-CCHH
T ss_pred ------------------EEE-CCeeEEEEECcCCCccch-----hhHHHHHHHHHHHHHhcCC-EEEEEEeCCC-CCHH
Confidence 000 11368999999986 210 1122233334456777777 6666666655 5554
Q ss_pred HHHHHHHhhCCCCCcEEEeecccccCC
Q 005389 203 DALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 203 ~~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
+ ..+++.+...+.|.++|+||+|+..
T Consensus 105 ~-~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 105 D-EMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp H-HHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred H-HHHHHHHHhcCCCEEEEEECcccCc
Confidence 4 4566666666799999999999986
No 37
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.21 E-value=5.4e-11 Score=115.69 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~l 73 (699)
...+|+|+|..++|||||+|+|+|..+.
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~ 33 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFH 33 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC
Confidence 3568999999999999999999998764
No 38
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.21 E-value=7.8e-11 Score=131.82 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=61.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
.+|+|+|.+|+|||||+|+|+|.++..++..+ +|+-.+.
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~---------------------------------------- 273 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIE---------------------------------------- 273 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------C----------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEE----------------------------------------
Confidence 46999999999999999999998643222211 1211100
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---H
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (699)
..+.+. ...+.||||||+.+.. ..++...-.....|+..++ ++|+|++++...... .
T Consensus 274 -----------~~i~~~---g~~l~liDT~G~~~~~-----~~ve~~gi~~~~~~~~~aD-~vl~VvD~s~~~s~~~~~~ 333 (476)
T 3gee_A 274 -----------ECFIHD---KTMFRLTDTAGLREAG-----EEIEHEGIRRSRMKMAEAD-LILYLLDLGTERLDDELTE 333 (476)
T ss_dssp -----------EEEEET---TEEEEEEC-------------------------CCCSSCS-EEEEEEETTTCSSGGGHHH
T ss_pred -----------EEEEEC---CeEEEEEECCCCCcch-----hHHHHHHHHHHHhhcccCC-EEEEEEECCCCcchhhhHH
Confidence 011111 1359999999986431 1111111233456888898 666666666554432 3
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
...+.+.+. +.++|+|+||+|+.+.
T Consensus 334 ~~~~l~~l~--~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 334 IRELKAAHP--AAKFLTVANKLDRAAN 358 (476)
T ss_dssp HHHHHHHCT--TSEEEEEEECTTSCTT
T ss_pred HHHHHHhcC--CCCEEEEEECcCCCCc
Confidence 355666665 6899999999999764
No 39
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.20 E-value=9.1e-11 Score=115.80 Aligned_cols=117 Identities=18% Similarity=0.222 Sum_probs=70.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
..++|+|+|..++|||||+|+|++..+.+......+.....
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--------------------------------------- 59 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI--------------------------------------- 59 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEE---------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE---------------------------------------
Confidence 46789999999999999999999887633222111111000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc---h
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---S 202 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~ 202 (699)
..+.+.+ ....+.||||||... ++.+...|+..++++|+ |.++.....- .
T Consensus 60 ------------~~~~~~~-~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~-v~d~~~~~s~~~~~ 112 (213)
T 3cph_A 60 ------------KTVDING-KKVKLQLWDTAGQER-------------FRTITTAYYRGAMGIIL-VYDVTDERTFTNIK 112 (213)
T ss_dssp ------------EEEEETT-EEEEEEEECCTTGGG-------------GTCCCHHHHTTCSEEEE-EEETTCHHHHHTHH
T ss_pred ------------EEEEECC-EEEEEEEEeCCCcHH-------------HHHHHHHHhccCCEEEE-EEECCCHHHHHHHH
Confidence 0111111 013689999999542 22345578888985555 4555432211 1
Q ss_pred HHHHHHHhhCCCCCcEEEeecccccC
Q 005389 203 DALQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 203 ~~l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
.++..+....+.+.++++|+||+|+.
T Consensus 113 ~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 113 QWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp HHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 23344455555578999999999994
No 40
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.20 E-value=1.6e-10 Score=111.63 Aligned_cols=67 Identities=12% Similarity=0.211 Sum_probs=43.5
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---HHHHHhhCC-CCCcEEEeecc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIADP-DGYRTIGIITK 224 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l~l~~~~dp-~g~rti~VlTK 224 (699)
.+.|+||||.. .++.+...|+++++++| +|.++.....-.+. +..+..... .+.++++|+||
T Consensus 71 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 136 (195)
T 3bc1_A 71 HLQLWDTAGLE-------------RFRSLTTAFFRDAMGFL-LLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNK 136 (195)
T ss_dssp EEEEEEECCSG-------------GGHHHHHHTTTTCSEEE-EEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEEC
T ss_pred EEEEEeCCCcH-------------HHHHHHHHHHcCCCEEE-EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 68999999963 34566778999998555 45555443222222 222222222 57899999999
Q ss_pred cccCC
Q 005389 225 LDIMD 229 (699)
Q Consensus 225 ~D~~~ 229 (699)
+|+.+
T Consensus 137 ~Dl~~ 141 (195)
T 3bc1_A 137 SDLED 141 (195)
T ss_dssp TTCGG
T ss_pred ccccc
Confidence 99975
No 41
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.20 E-value=1.2e-10 Score=109.47 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=69.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..|+|||||+|+|++..+. ....+++.......
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~-------------------------------------- 44 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKK-------------------------------------- 44 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEE--------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC-CCCCCCcceEEEEE--------------------------------------
Confidence 357999999999999999999988752 22222221111000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH--
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (699)
+.+.+ ....+.||||||.. ....+...|++.++++|+++ ++.....-...
T Consensus 45 -------------~~~~~-~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~ 96 (168)
T 1u8z_A 45 -------------VVLDG-EEVQIDILDTAGQE-------------DYAAIRDNYFRSGEGFLCVF-SITEMESFAATAD 96 (168)
T ss_dssp -------------EEETT-EEEEEEEEECCC----------------CHHHHHHHHHHCSEEEEEE-ETTCHHHHHHHHH
T ss_pred -------------EEECC-EEEEEEEEECCCcc-------------hhHHHHHHHhhcCCEEEEEE-ECCCHHHHHHHHH
Confidence 00000 11368999999943 23456677888888555554 44432211111
Q ss_pred -H-HHHHhhCCCCCcEEEeecccccCCC
Q 005389 205 -L-QIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 -l-~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+ .+.......+.++++|+||+|+.+.
T Consensus 97 ~~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 97 FREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp HHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCCcEEEEEECcccccc
Confidence 1 2333344457899999999999753
No 42
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.20 E-value=5.5e-11 Score=112.45 Aligned_cols=115 Identities=16% Similarity=0.190 Sum_probs=67.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+|+|..++|||||+|+|++..+.+......+.....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~----------------------------------------- 42 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI----------------------------------------- 42 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEE-----------------------------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEE-----------------------------------------
Confidence 579999999999999999999987632221111100000
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc---hHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDA 204 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~~ 204 (699)
..+.+.+ ....+.||||||.... ..+...|++.++++ ++|.++.....- ...
T Consensus 43 ----------~~~~~~~-~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~~~ 97 (170)
T 1g16_A 43 ----------KTVDING-KKVKLQIWDTAGQERF-------------RTITTAYYRGAMGI-ILVYDITDERTFTNIKQW 97 (170)
T ss_dssp ----------EEEESSS-CEEEEEEECCTTGGGT-------------SCCCHHHHTTEEEE-EEEEETTCHHHHHTHHHH
T ss_pred ----------EEEEECC-EEEEEEEEeCCCChhh-------------hhhHHHHhccCCEE-EEEEECCCHHHHHHHHHH
Confidence 0011111 1136899999995422 23345688888854 455555433221 122
Q ss_pred HHHHHhhCCCCCcEEEeecccccC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
+..+......+.++++|+||+|+.
T Consensus 98 ~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 98 FKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp HHHHHHHSCTTCEEEEEEECTTCT
T ss_pred HHHHHHhcCCCCcEEEEEECccCC
Confidence 344445555578999999999994
No 43
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.19 E-value=6.1e-11 Score=113.36 Aligned_cols=117 Identities=18% Similarity=0.263 Sum_probs=69.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
..++|+|+|..++|||||+|+|++..+.+ ...++|+.....
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~-------------------------------------- 48 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVS-DYDPTIEDSYTK-------------------------------------- 48 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCS-SCCTTCCEEEEE--------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCCcCceEEE--------------------------------------
Confidence 45689999999999999999999986532 222222211110
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH-
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA- 204 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~- 204 (699)
.+.+.+ ....+.||||||.... ..+...|++..+++|+++ ++.....-...
T Consensus 49 -------------~~~~~~-~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~ 100 (181)
T 2fn4_A 49 -------------ICSVDG-IPARLDILDTAGQEEF-------------GAMREQYMRAGHGFLLVF-AINDRQSFNEVG 100 (181)
T ss_dssp -------------EEEETT-EEEEEEEEECCCTTTT-------------SCCHHHHHHHCSEEEEEE-ETTCHHHHHHHH
T ss_pred -------------EEEECC-EEEEEEEEECCCchhh-------------HHHHHHHHhhCCEEEEEE-eCCCHHHHHHHH
Confidence 000000 0135889999996432 233446777788555554 44432211111
Q ss_pred --H-HHHHhhCCCCCcEEEeecccccCC
Q 005389 205 --L-QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 --l-~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
+ .+.+.....+.++++|+||+|+.+
T Consensus 101 ~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 101 KLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 1 233555566789999999999975
No 44
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.19 E-value=1.1e-10 Score=111.32 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
.++|+|+|..|+|||||+|+|++..+
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~ 32 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKF 32 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999998865
No 45
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.19 E-value=1.3e-10 Score=109.51 Aligned_cols=115 Identities=20% Similarity=0.245 Sum_probs=67.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+|+|..++|||||+|+|++..+. ....+++......
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~---------------------------------------- 42 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRK---------------------------------------- 42 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEE----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCccceEEE----------------------------------------
Confidence 47999999999999999999987652 2221111111000
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCccc--c-hHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA--N-SDA 204 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~--~-~~~ 204 (699)
.+.+.+ ....+.||||||.... ..+...|+++++++|+++ ++..... . ...
T Consensus 43 -----------~~~~~~-~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~ 96 (167)
T 1c1y_A 43 -----------QVEVDC-QQCMLEILDTAGTEQF-------------TAMRDLYMKNGQGFALVY-SITAQSTFNDLQDL 96 (167)
T ss_dssp -----------EEESSS-CEEEEEEEEECSSCSS-------------TTHHHHHHHHCSEEEEEE-ETTCHHHHHTHHHH
T ss_pred -----------EEEECC-EEEEEEEEECCChHHH-------------HHHHHHHhccCCEEEEEE-ECCCHHHHHHHHHH
Confidence 000000 1135899999996532 234456778888555554 4443211 1 112
Q ss_pred H-HHHHhhCCCCCcEEEeecccccCC
Q 005389 205 L-QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 l-~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
+ .+.+.....+.++++|+||+|+.+
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 97 REQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp HHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred HHHHHHhhCcCCCcEEEEEECccccc
Confidence 2 233334455789999999999975
No 46
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.18 E-value=1.7e-10 Score=111.15 Aligned_cols=117 Identities=19% Similarity=0.202 Sum_probs=71.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+.+......+.....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 49 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGS---------------------------------------- 49 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEE----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE----------------------------------------
Confidence 4689999999999999999999887633222111100000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---H
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (699)
..+.+.+ ....+.||||||.. ..+.+...|+++++++|++ .++.....-. .
T Consensus 50 -----------~~~~~~~-~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~ 103 (186)
T 2bme_A 50 -----------KIINVGG-KYVKLQIWDTAGQE-------------RFRSVTRSYYRGAAGALLV-YDITSRETYNALTN 103 (186)
T ss_dssp -----------EEEEETT-EEEEEEEEEECCSG-------------GGHHHHHTTSTTCSEEEEE-EETTCHHHHHTHHH
T ss_pred -----------EEEEECC-EEEEEEEEeCCCcH-------------HHHHHHHHHHhcCCEEEEE-EECcCHHHHHHHHH
Confidence 0011100 01368999999943 3445677899999855554 4544322211 2
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.+..++.....+.++++|+||+|+.+
T Consensus 104 ~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 104 WLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECccccc
Confidence 23334455556789999999999964
No 47
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.18 E-value=2.5e-11 Score=116.04 Aligned_cols=117 Identities=21% Similarity=0.289 Sum_probs=74.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
-..++|+|+|..++|||||+|+|++..+.+.....+|... .
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~--------------~------------------------- 46 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI--------------G------------------------- 46 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTC--------------C-------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEee--------------e-------------------------
Confidence 4578999999999999999999999876432221111110 0
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (699)
...+.+.+ ..+.||||||..... .+...|+..++++|+ |.+++.... ...
T Consensus 47 ------------~~~~~~~~---~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~-v~d~~~~~~-~~~ 96 (178)
T 2lkc_A 47 ------------AYQVTVND---KKITFLDTPGHEAFT-------------TMRARGAQVTDIVIL-VVAADDGVM-PQT 96 (178)
T ss_dssp ------------CCEEEETT---EEEEESCCCSSSSSS-------------CSCCSSCCCCCEEEE-EEETTCCCC-HHH
T ss_pred ------------EEEEEeCC---ceEEEEECCCCHHHH-------------HHHHHHHhhCCEEEE-EEECCCCCc-HHH
Confidence 00111111 257899999975332 122356778875554 455554332 334
Q ss_pred HHHHHhhCCCCCcEEEeecccccCCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+..++.+...+.++++|+||+|+.+.
T Consensus 97 ~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 97 VEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp HHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred HHHHHHHHhCCCCEEEEEECccCCcC
Confidence 56666666667899999999999864
No 48
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.18 E-value=1.1e-10 Score=113.65 Aligned_cols=118 Identities=13% Similarity=0.153 Sum_probs=70.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+.+...... .....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~-~~~~~---------------------------------------- 63 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTI-GVEFS---------------------------------------- 63 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCS-SEEEE----------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-ceeEE----------------------------------------
Confidence 4689999999999999999999987633221110 00000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---H
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (699)
...+.+. .....+.||||||.... +.+...|+++++.+|+ |.++.....-. .
T Consensus 64 ----------~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vi~-v~D~~~~~s~~~~~~ 118 (193)
T 2oil_A 64 ----------TRTVMLG-TAAVKAQIWDTAGLERY-------------RAITSAYYRGAVGALL-VFDLTKHQTYAVVER 118 (193)
T ss_dssp ----------EEEEEET-TEEEEEEEEEESCCCTT-------------CTTHHHHHTTCCEEEE-EEETTCHHHHHTHHH
T ss_pred ----------EEEEEEC-CEEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEE-EEECCCHHHHHHHHH
Confidence 0001110 11136899999997532 2345578888985554 55554432211 2
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+..+......+.++++|+||+|+.+.
T Consensus 119 ~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 119 WLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp HHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 233333434457899999999999753
No 49
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.18 E-value=1.4e-10 Score=112.36 Aligned_cols=116 Identities=17% Similarity=0.183 Sum_probs=63.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
-.+|+|+|..|+|||||+|+|++..+.+... .++......
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~--------------------------------------- 60 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYD-PTIEDSYRK--------------------------------------- 60 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSCCC-TTCCEEEEE---------------------------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCccccC-CccceEEEE---------------------------------------
Confidence 4579999999999999999999887532211 111111000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH--
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (699)
.+.+.+ ....+.||||||.. ....+...|+..++++|+ |.++.....-.+.
T Consensus 61 ------------~~~~~~-~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~ 113 (190)
T 3con_A 61 ------------QVVIDG-ETCLLDILDTAGQE-------------EYSAMRDQYMRTGEGFLC-VFAINNSKSFADINL 113 (190)
T ss_dssp ------------EEEETT-EEEEEEEEECCC------------------------CTTCSEEEE-EEETTCHHHHHHHHH
T ss_pred ------------EEEECC-EEEEEEEEECCChH-------------HHHHHHHHhhCcCCEEEE-EEECcCHHHHHHHHH
Confidence 001100 01358999999943 334566678999985554 4444433222222
Q ss_pred -HHHHHh-hCCCCCcEEEeecccccCC
Q 005389 205 -LQIAGI-ADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 -l~l~~~-~dp~g~rti~VlTK~D~~~ 229 (699)
+..+.. ....+.++++|+||+|+.+
T Consensus 114 ~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 114 YREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 222232 2334789999999999975
No 50
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.18 E-value=1.4e-10 Score=110.64 Aligned_cols=118 Identities=16% Similarity=0.176 Sum_probs=71.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+|+|..++|||||+|+|++..+..... .++.....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~--------------------------------------- 53 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCP-HTIGVEFG--------------------------------------- 53 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCT-TSCCCCEE---------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-CccceEEE---------------------------------------
Confidence 35689999999999999999999987632211 11111000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--- 202 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--- 202 (699)
...+.+.+ ....+.||||||.. .++.+...|+++++++|+ |.++.....-.
T Consensus 54 -----------~~~~~~~~-~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 107 (179)
T 1z0f_A 54 -----------TRIIEVSG-QKIKLQIWDTAGQE-------------RFRAVTRSYYRGAAGALM-VYDITRRSTYNHLS 107 (179)
T ss_dssp -----------EEEEEETT-EEEEEEEEECTTGG-------------GTCHHHHHHHHTCSEEEE-EEETTCHHHHHTHH
T ss_pred -----------EEEEEECC-eEEEEEEEECCCCh-------------HhhhhHHHHhccCCEEEE-EEeCcCHHHHHHHH
Confidence 00111111 11368999999943 234556788999985554 55555432222
Q ss_pred HHHHHHHhhCCCCCcEEEeecccccCC
Q 005389 203 DALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 203 ~~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.++..++.....+.++++|+||+|+.+
T Consensus 108 ~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 108 SWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECccccc
Confidence 223334555555789999999999964
No 51
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.18 E-value=2.3e-10 Score=110.20 Aligned_cols=116 Identities=18% Similarity=0.222 Sum_probs=67.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+|+|..|+|||||+|+|++..+.+... .++.......
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~--------------------------------------- 44 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYD-PTIEDSYRKQ--------------------------------------- 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCCCC-TTCCEEEEEE---------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CCchheEEEE---------------------------------------
Confidence 479999999999999999999887532222 2221111000
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---H
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---A 204 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~ 204 (699)
+.+. .....+.||||||... +..+...|+..++++|++ .+++....-.. .
T Consensus 45 ------------~~~~-~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v-~d~~~~~s~~~~~~~ 97 (189)
T 4dsu_A 45 ------------VVID-GETCLLDILDTAGQEE-------------YSAMRDQYMRTGEGFLCV-FAINNTKSFEDIHHY 97 (189)
T ss_dssp ------------EEET-TEEEEEEEEECCCC----------------CTTHHHHHHHCSEEEEE-EETTCHHHHHHHHHH
T ss_pred ------------EEEC-CcEEEEEEEECCCcHH-------------HHHHHHHHHhcCCEEEEE-EECCCHHHHHHHHHH
Confidence 0000 0112588999999542 334555788888855554 44443221111 1
Q ss_pred HH-HHHhhCCCCCcEEEeecccccCCC
Q 005389 205 LQ-IAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 l~-l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+. +.......+.++++|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 124 (189)
T 4dsu_A 98 REQIKRVKDSEDVPMVLVGNKCDLPSR 124 (189)
T ss_dssp HHHHHHHTTCSCCCEEEEEECTTSSSC
T ss_pred HHHHHHhcCCCCCcEEEEEECccCccc
Confidence 22 223344457899999999999743
No 52
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.17 E-value=1.9e-10 Score=109.45 Aligned_cols=119 Identities=16% Similarity=0.113 Sum_probs=61.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
.++|+|+|..|+|||||+|+|+|..+.+....+.+.. +
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~--------------~---------------------------- 41 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDV--------------Y---------------------------- 41 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSE--------------E----------------------------
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccce--------------e----------------------------
Confidence 4689999999999999999999987532221110000 0
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH--
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (699)
...+.+.+ ....+.+|||||.... ....+...|++.++++|+++ +.+....-...
T Consensus 42 ----------~~~~~~~~-~~~~~~~~D~~g~~~~-----------~~~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~ 98 (175)
T 2nzj_A 42 ----------ERTLTVDG-EDTTLVVVDTWEAEKL-----------DKSWSQESCLQGGSAYVIVY-SIADRGSFESASE 98 (175)
T ss_dssp ----------EEEEEETT-EEEEEEEECCC------------------CHHHHHTTTSCSEEEEEE-ETTCHHHHHHHHH
T ss_pred ----------EEEEEECC-EEEEEEEEecCCCCcc-----------chhhhHHhhcccCCEEEEEE-ECCCHHHHHHHHH
Confidence 00111111 1135899999996431 12344557888888665554 44332211111
Q ss_pred -HHHHHhh-CCCCCcEEEeecccccCCC
Q 005389 205 -LQIAGIA-DPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 -l~l~~~~-dp~g~rti~VlTK~D~~~~ 230 (699)
+..+... ...+.++++|+||+|+.+.
T Consensus 99 ~~~~l~~~~~~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 99 LRIQLRRTHQADHVPIILVGNKADLARC 126 (175)
T ss_dssp HHHHHHHCC----CCEEEEEECTTCTTT
T ss_pred HHHHHHHhhccCCCCEEEEEEChhhccc
Confidence 2222222 2347899999999999753
No 53
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.17 E-value=2.2e-10 Score=111.29 Aligned_cols=118 Identities=16% Similarity=0.203 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+.+......|......
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------- 56 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIR--------------------------------------- 56 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEE---------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEE---------------------------------------
Confidence 46899999999999999999998876332221111111000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc---hH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SD 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~ 203 (699)
.+.+.+ ....+.||||||.. ..+.+...|++.++.+|+ |.++.....- ..
T Consensus 57 ------------~~~~~~-~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~ 109 (196)
T 3tkl_A 57 ------------TIELDG-KTIKLQIWDTAGQE-------------RFRTITSSYYRGAHGIIV-VYDVTDQESFNNVKQ 109 (196)
T ss_dssp ------------EEEETT-EEEEEEEEEECCSG-------------GGCTTHHHHHTTCSEEEE-EEETTCHHHHHTHHH
T ss_pred ------------EEEECC-EEEEEEEEECCCcH-------------hhhhhHHHHHhhCCEEEE-EEECcCHHHHHHHHH
Confidence 011100 01268999999943 233456678899985555 4554432211 22
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
++..+......+.++++|+||+|+.+.
T Consensus 110 ~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 110 WLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHhcCCCCCEEEEEECcccccc
Confidence 344455555667899999999999754
No 54
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.17 E-value=6.6e-11 Score=116.09 Aligned_cols=120 Identities=13% Similarity=0.059 Sum_probs=61.6
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---HHHHHHhhCC---CCCcEEEe
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADP---DGYRTIGI 221 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~dp---~g~rti~V 221 (699)
..+.||||||.. ..+.+...|+++++++| +|.++.....-.. ++..+....+ .+.++++|
T Consensus 73 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 138 (208)
T 2yc2_C 73 VELFLLDTAGSD-------------LYKEQISQYWNGVYYAI-LVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV 138 (208)
T ss_dssp EEEEEEETTTTH-------------HHHHHHSTTCCCCCEEE-EEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEE
T ss_pred EEEEEEECCCcH-------------HHHHHHHHHHhhCcEEE-EEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEE
Confidence 368999999952 45667788999998554 4555544322222 2333344444 57899999
Q ss_pred ecccccCC-CcccHHHHhcCCccccccCEEEEEcCChhhhhccccHHHHHHHHHHhcCCCCc-ccCccc-cCCcchHHHH
Q 005389 222 ITKLDIMD-RGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPV-YNGLAD-RCGVPQLAKK 298 (699)
Q Consensus 222 lTK~D~~~-~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d~~~~~s~~~~~~~E~~fF~~~~~-~~~~~~-~~Gi~~L~~~ 298 (699)
+||+|+.+ ... .+..++...-..+ . .+. ..++.+ +.|+..|.+.
T Consensus 139 ~nK~Dl~~~~~~-------------------------------v~~~~~~~~~~~~-~-~~~~~~Sa~~~~~gi~~l~~~ 185 (208)
T 2yc2_C 139 ANKTDLPPQRHQ-------------------------------VRLDMAQDWATTN-T-LDFFDVSANPPGKDADAPFLS 185 (208)
T ss_dssp EECC-------C-------------------------------CCHHHHHHHHHHT-T-CEEEECCC-------CHHHHH
T ss_pred EECcccchhhcc-------------------------------CCHHHHHHHHHHc-C-CEEEEeccCCCCcCHHHHHHH
Confidence 99999975 211 0111111111111 1 112 245566 8899999988
Q ss_pred HHHHHHHHHHhhhhhH
Q 005389 299 LNQILVQHIKAILPGL 314 (699)
Q Consensus 299 L~~~L~~~i~~~LP~l 314 (699)
|.+.+.+...+.+..+
T Consensus 186 i~~~~~~~~~~~~~~~ 201 (208)
T 2yc2_C 186 IATTFYRNYEDKVAAF 201 (208)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHH
Confidence 8887766655544433
No 55
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.17 E-value=1.3e-10 Score=129.13 Aligned_cols=204 Identities=16% Similarity=0.263 Sum_probs=111.1
Q ss_pred cCCCCCchHHHHHHHHHHHHHhCCC--C---CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCC-ccccceEEEEeec
Q 005389 18 AVPLGGSVIPLVNKLQDIFAQLGSQ--S---TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQ 91 (699)
Q Consensus 18 ~~~~~~~l~~~~~~L~d~~~~lg~~--~---~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~-~~Tr~p~~~~l~~ 91 (699)
++.-+..+-++++.+.+.+...+.. . .-..++|+|||.+|+|||||+|+|+|..+..++.- .+|+-+.
T Consensus 146 SA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~------ 219 (439)
T 1mky_A 146 SAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPV------ 219 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------C------
T ss_pred eccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCce------
Confidence 4445667777888887766543311 1 23457999999999999999999999864222221 1222211
Q ss_pred cCCCcccceeecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHH
Q 005389 92 TKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIE 171 (699)
Q Consensus 92 ~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~ 171 (699)
.+ .+.+.+ ..+.+|||||+.+..... +..++
T Consensus 220 ------~~---------------------------------------~i~~~g---~~~~l~Dt~G~~~~~~~~-~~~~e 250 (439)
T 1mky_A 220 ------DD---------------------------------------EVFIDG---RKYVFVDTAGLRRKSRVE-PRTVE 250 (439)
T ss_dssp ------CE---------------------------------------EEEETT---EEEEESSCSCC------------C
T ss_pred ------EE---------------------------------------EEEECC---EEEEEEECCCCccccccc-hhhHH
Confidence 00 111211 258899999985321100 00000
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCcccHHHHhcCCccccccCEEE
Q 005389 172 ARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVG 251 (699)
Q Consensus 172 ~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~~~~~~~l~~~~~~l~lG~~~ 251 (699)
......+..++..++ ++++|.++......++ ..++..+...+.++++|+||+|+.+......+
T Consensus 251 ~~~~~~~~~~i~~ad-~vllv~d~~~~~~~~~-~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~--------------- 313 (439)
T 1mky_A 251 KYSNYRVVDSIEKAD-VVVIVLDATQGITRQD-QRMAGLMERRGRASVVVFNKWDLVVHREKRYD--------------- 313 (439)
T ss_dssp CSCCHHHHHHHHHCS-EEEEEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGSTTGGGCHH---------------
T ss_pred HHHHHHHHHHHhhCC-EEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECccCCCchhhHHH---------------
Confidence 000011245777787 5556666665554444 45555555568999999999999864321000
Q ss_pred EEcCChhhhhccccHHHHHHHHHHhcCCCCc-ccCccccCCcchHHHHHHHHHHHH
Q 005389 252 VVNRSQEDIMFNRSIKDALVAEEKFFRSRPV-YNGLADRCGVPQLAKKLNQILVQH 306 (699)
Q Consensus 252 V~nrs~~d~~~~~s~~~~~~~E~~fF~~~~~-~~~~~~~~Gi~~L~~~L~~~L~~~ 306 (699)
.+.+....+..++...|. +.++.++.|+..|.+.+.+.+.++
T Consensus 314 -------------~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 314 -------------EFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp -------------HHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 011122222223333333 356678899999888887765543
No 56
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.16 E-value=3e-10 Score=109.13 Aligned_cols=119 Identities=15% Similarity=0.215 Sum_probs=70.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
....+|+|+|..++|||||+|+|++..+.+ ....++.......
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~------------------------------------ 58 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVE-DYEPTKADSYRKK------------------------------------ 58 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCTTCCEEEEEE------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCC-cCCCccceEEEEE------------------------------------
Confidence 345689999999999999999999887532 2222222111100
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (699)
+.+.+ ....+.||||||... ...+...|++..+++|+++ ++.....-...
T Consensus 59 ---------------~~~~~-~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~ 108 (187)
T 2a9k_A 59 ---------------VVLDG-EEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVF-SITEMESFAAT 108 (187)
T ss_dssp ---------------EEETT-EEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEE-ETTCHHHHHHH
T ss_pred ---------------EEECC-EEEEEEEEECCCCcc-------------cHHHHHHHhccCCEEEEEE-ECcCHHHHHHH
Confidence 00000 012589999999542 2345667888888555554 44432211111
Q ss_pred ---H-HHHHhhCCCCCcEEEeecccccCCC
Q 005389 205 ---L-QIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 ---l-~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+ .+.......+.++++|+||+|+.+.
T Consensus 109 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 109 ADFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp HHHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 1 2333444457899999999999753
No 57
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.16 E-value=7.1e-11 Score=115.01 Aligned_cols=117 Identities=19% Similarity=0.211 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+.+......+
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--------------------------------------------- 57 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG--------------------------------------------- 57 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEET---------------------------------------------
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCee---------------------------------------------
Confidence 46899999999999999999998775322110000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCccc---chH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA---NSD 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~---~~~ 203 (699)
.......+.+.+. ...+.|||||| .+.++.+...|++.++.+|+ |.++..... ...
T Consensus 58 ------~~~~~~~~~~~~~-~~~~~i~Dt~G-------------~~~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~ 116 (191)
T 3dz8_A 58 ------IDFKVKTVYRHEK-RVKLQIWDTAG-------------QERYRTITTAYYRGAMGFIL-MYDITNEESFNAVQD 116 (191)
T ss_dssp ------TTEEEEEEEETTT-TEEEEEECHHH-------------HHHCHHHHHHHHTTCCEEEE-EEETTCHHHHHTHHH
T ss_pred ------eEEEEEEEEECCE-EEEEEEEeCCC-------------hHHHHHHHHHHHccCCEEEE-EEECcCHHHHHHHHH
Confidence 0000001111111 13689999999 23566778889999985555 455543211 122
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.+..++.....+.++++|+||+|+.+
T Consensus 117 ~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 117 WATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 34445555556789999999999864
No 58
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.16 E-value=1.9e-10 Score=113.21 Aligned_cols=117 Identities=20% Similarity=0.196 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+.+......+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~------------------------------------------ 62 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEF------------------------------------------ 62 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCE------------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCccccee------------------------------------------
Confidence 46899999999999999999999875322111100000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (699)
....+.+.+ ....+.||||||. +....+...|++.++++|++ .++.....-..
T Consensus 63 ---------~~~~~~~~~-~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~ 118 (200)
T 2o52_A 63 ---------GSRVVNVGG-KTVKLQIWDTAGQ-------------ERFRSVTRSYYRGAAGALLV-YDITSRETYNSLAA 118 (200)
T ss_dssp ---------EEEEEEETT-EEEEEEEECCTTH-------------HHHSCCCHHHHTTCSEEEEE-EETTCHHHHHTHHH
T ss_pred ---------EEEEEEECC-eeeEEEEEcCCCc-------------HhHHHHHHHHhccCCEEEEE-EECcCHHHHHHHHH
Confidence 000111111 1136899999993 23445566789999855555 45443222112
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.+..+......+.++++|+||+|+.+
T Consensus 119 ~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 119 WLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp HHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECCCccc
Confidence 22333444445789999999999964
No 59
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.16 E-value=7.9e-11 Score=114.52 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=38.6
Q ss_pred CCCCCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 19 VPLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 19 ~~~~~~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
..+...+-.+.+.+.+.+..+.....-..++|+|+|..|+|||||+|+|++..+
T Consensus 20 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 20 SINKRKISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp BTTTTBCHHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346667777788887776666554455678999999999999999999999875
No 60
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.15 E-value=6.5e-11 Score=111.74 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
..+|+|+|..++|||||+|+|++..+
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC
Confidence 35799999999999999999998765
No 61
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.15 E-value=9e-11 Score=130.82 Aligned_cols=121 Identities=21% Similarity=0.233 Sum_probs=65.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
.+|+|+|.+|+|||||+|+|+|.++..+..-+ +|+-.. .
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~-------------~--------------------------- 264 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVV-------------E--------------------------- 264 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHH-------------H---------------------------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEE-------------E---------------------------
Confidence 46999999999999999999997653222211 121110 0
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
..+.+. ...++||||||+.+.. ..++...-.....++..++ ++|+|+++.......+ ..
T Consensus 265 -----------~~i~~~---g~~v~liDT~G~~~~~-----~~ve~~gi~~~~~~~~~aD-~vl~VvD~s~~~~~~~-~~ 323 (462)
T 3geh_A 265 -----------SQLVVG---GIPVQVLDTAGIRETS-----DQVEKIGVERSRQAANTAD-LVLLTIDAATGWTTGD-QE 323 (462)
T ss_dssp -----------HEEEET---TEEEEECC-------------------------CCCCSCS-EEEEEEETTTCSCHHH-HH
T ss_pred -----------EEEEEC---CEEEEEEECCccccch-----hHHHHHHHHHHhhhhhcCC-EEEEEeccCCCCCHHH-HH
Confidence 011111 1358999999985431 1111111123456778888 6666777766554443 45
Q ss_pred HHHhhCCCCCcEEEeecccccCCCc
Q 005389 207 IAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 207 l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
+.+.+.. .++++|+||+|+....
T Consensus 324 i~~~l~~--~piivV~NK~Dl~~~~ 346 (462)
T 3geh_A 324 IYEQVKH--RPLILVMNKIDLVEKQ 346 (462)
T ss_dssp HHHHHTT--SCEEEEEECTTSSCGG
T ss_pred HHHhccC--CcEEEEEECCCCCcch
Confidence 5566643 6999999999998643
No 62
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.14 E-value=5.5e-11 Score=133.16 Aligned_cols=119 Identities=23% Similarity=0.261 Sum_probs=73.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCC-ccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
.+|+|||.+|+|||||||+|+|.++..+..- .+|+-+..-
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~--------------------------------------- 284 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISE--------------------------------------- 284 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCE---------------------------------------
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEE---------------------------------------
Confidence 5899999999999999999999865323222 223222110
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCC-CCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGIT-KVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~-~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
.+.+. ...++||||||+. ..... ++..--.....|+..++ ++|+|+++.......+ .
T Consensus 285 ------------~i~~~---g~~~~l~DTaG~~~~~~~~-----ve~~gi~~~~~~~~~aD-~vl~VvD~s~~~s~~~-~ 342 (482)
T 1xzp_A 285 ------------EIVIR---GILFRIVDTAGVRSETNDL-----VERLGIERTLQEIEKAD-IVLFVLDASSPLDEED-R 342 (482)
T ss_dssp ------------EEEET---TEEEEEEESSCCCSSCCTT-----CCCCCHHHHHHHHHHCS-EEEEEEETTSCCCHHH-H
T ss_pred ------------EEecC---CeEEEEEECCCccccchhh-----HHHHHHHHHHHHhhccc-EEEEEecCCCCCCHHH-H
Confidence 11111 1258999999987 43211 00010123456888888 6666666655443333 4
Q ss_pred HHHHhhCCCCCcEEEeecccccCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
++...+ .+.++++|+||+|+.+
T Consensus 343 ~il~~l--~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 343 KILERI--KNKRYLVVINKVDVVE 364 (482)
T ss_dssp HHHHHH--TTSSEEEEEEECSSCC
T ss_pred HHHHHh--cCCCEEEEEECccccc
Confidence 455555 3689999999999975
No 63
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.14 E-value=6.5e-10 Score=120.32 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
..|.|++||.+|||||||+|+|+|..+...+.-.+|+-++.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~--------------------------------------- 218 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKR--------------------------------------- 218 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCE---------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEE---------------------------------------
Confidence 57789999999999999999999987522222222322211
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcc--cch-
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL--ANS- 202 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~--~~~- 202 (699)
-.+.+.+ ..+.++||||+... .|.++.+.++.. ..++..++ ++++|+++.... ...
T Consensus 219 ------------~~i~~~g---~~v~l~DT~G~i~~----lp~~lve~f~~t-l~~~~~aD-~il~VvD~s~~~~~~~~~ 277 (364)
T 2qtf_A 219 ------------YAIPINN---RKIMLVDTVGFIRG----IPPQIVDAFFVT-LSEAKYSD-ALILVIDSTFSENLLIET 277 (364)
T ss_dssp ------------EEEEETT---EEEEEEECCCBCSS----CCGGGHHHHHHH-HHGGGGSS-EEEEEEETTSCHHHHHHH
T ss_pred ------------EEEEECC---EEEEEEeCCCchhc----CCHHHHHHHHHH-HHHHHhCC-EEEEEEECCCCcchHHHH
Confidence 0122222 25889999997542 134444455554 45778887 666666665432 111
Q ss_pred --HHHHHHHhhCCCCCcEEEeecccccCCCc
Q 005389 203 --DALQIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 203 --~~l~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
.+..+++.+...+.++|+|+||+|+.+.+
T Consensus 278 ~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 278 LQSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp HHHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred HHHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 12345666665678999999999998653
No 64
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.14 E-value=9.1e-11 Score=121.63 Aligned_cols=117 Identities=22% Similarity=0.303 Sum_probs=70.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
.++|+++|.+|+|||||+|+|+|..+ +++.-+ +|....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~---------------------------------------- 41 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKK---------------------------------------- 41 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEE----------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEee----------------------------------------
Confidence 57899999999999999999999865 333211 111100
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHh--cCCCeeEEEEecCCCcccchH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYI--KQPSCLILAVTPANSDLANSD 203 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi--~~~~~iIL~V~~a~~d~~~~~ 203 (699)
...+.+ . ...+.||||||+.+..... .+ ..+...|+ .+++ ++++|+++.... .
T Consensus 42 -----------~~~~~~--~-~~~~~l~DtpG~~~~~~~~----~~---~~~~~~~~~~~~~d-~vi~v~D~~~~~---~ 96 (271)
T 3k53_A 42 -----------EGIMEY--R-EKEFLVVDLPGIYSLTAHS----ID---ELIARNFILDGNAD-VIVDIVDSTCLM---R 96 (271)
T ss_dssp -----------EEEEEE--T-TEEEEEEECCCCSCCCSSC----HH---HHHHHHHHHTTCCS-EEEEEEEGGGHH---H
T ss_pred -----------EEEEEE--C-CceEEEEeCCCccccccCC----HH---HHHHHHhhhccCCc-EEEEEecCCcch---h
Confidence 001111 1 1258999999987543211 11 22344566 5677 555566655432 2
Q ss_pred HHHHHHhhCCCC-CcEEEeecccccCC
Q 005389 204 ALQIAGIADPDG-YRTIGIITKLDIMD 229 (699)
Q Consensus 204 ~l~l~~~~dp~g-~rti~VlTK~D~~~ 229 (699)
.+.+..++...+ .++++|+||+|+.+
T Consensus 97 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 97 NLFLTLELFEMEVKNIILVLNKFDLLK 123 (271)
T ss_dssp HHHHHHHHHHTTCCSEEEEEECHHHHH
T ss_pred hHHHHHHHHhcCCCCEEEEEEChhcCc
Confidence 234444444445 89999999999864
No 65
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.14 E-value=1e-10 Score=114.84 Aligned_cols=27 Identities=30% Similarity=0.594 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~l 73 (699)
..+|+|+|..++|||||+|+|++..+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~ 34 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFS 34 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 468999999999999999999998764
No 66
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.14 E-value=7.9e-11 Score=110.43 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=67.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+|+|..|+|||||+|+|++..+.+... .++......
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-~~~~~~~~~---------------------------------------- 42 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECD-PTIEDSYRK---------------------------------------- 42 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCC-TTCCEEEEE----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccC-CccceEEEE----------------------------------------
Confidence 369999999999999999999887532211 111110000
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA--- 204 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~--- 204 (699)
.+.+.+ ....+.||||||.... ..+...|+..++.+|+++ ++.....-.+.
T Consensus 43 -----------~~~~~~-~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~~~~~~~~~ 96 (166)
T 2ce2_X 43 -----------QVVIDG-ETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVF-AINNTKSFEDIHQY 96 (166)
T ss_dssp -----------EEEETT-EEEEEEEEECCCCSSC-------------CHHHHHHHHHCSEEEEEE-ETTCHHHHHHHHHH
T ss_pred -----------EEEECC-EEEEEEEEECCCchhh-------------hHHHHHhhccCCEEEEEE-ECCCHHHHHHHHHH
Confidence 001100 1135899999996532 234456788888555554 44432221221
Q ss_pred HHHHH-hhCCCCCcEEEeecccccCC
Q 005389 205 LQIAG-IADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 l~l~~-~~dp~g~rti~VlTK~D~~~ 229 (699)
+..+. .....+.++++|+||+|+.+
T Consensus 97 ~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 97 REQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp HHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 22222 23334789999999999976
No 67
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.14 E-value=1.3e-10 Score=109.29 Aligned_cols=115 Identities=21% Similarity=0.214 Sum_probs=68.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+|+|..|+|||||+|+|++..+.+... +++......
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~---------------------------------------- 42 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYD-PTIEDFYRK---------------------------------------- 42 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCC-TTCCEEEEE----------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCC-CCcceeEEE----------------------------------------
Confidence 479999999999999999999877532221 111110000
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA--- 204 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~--- 204 (699)
.+.+.+ ....+.||||||... ...+...|++..+.+|+++ ++.....-...
T Consensus 43 -----------~~~~~~-~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~ 96 (167)
T 1kao_A 43 -----------EIEVDS-SPSVLEILDTAGTEQ-------------FASMRDLYIKNGQGFILVY-SLVNQQSFQDIKPM 96 (167)
T ss_dssp -----------EEEETT-EEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEE-ETTCHHHHHHHHHH
T ss_pred -----------EEEECC-EEEEEEEEECCCchh-------------hHHHHHHHhccCCEEEEEE-eCCCHHHHHHHHHH
Confidence 011100 112589999999542 2345567888888555554 44432211111
Q ss_pred -HHHHHhhCCCCCcEEEeecccccCC
Q 005389 205 -LQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 -l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
..+.+.....+.++++|+||+|+.+
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 97 RDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp HHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred HHHHHHhcCCCCCCEEEEEECCcccc
Confidence 1233444456789999999999974
No 68
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.14 E-value=4.1e-10 Score=110.35 Aligned_cols=120 Identities=16% Similarity=0.219 Sum_probs=71.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHh
Q 005389 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (699)
Q Consensus 44 ~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (699)
....++|+|+|..++|||||+|+|++..+. ....+++.......
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~----------------------------------- 54 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKK----------------------------------- 54 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCTTCCEEEEEE-----------------------------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEE-----------------------------------
Confidence 345678999999999999999999988752 22222221111000
Q ss_pred hhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch-
Q 005389 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS- 202 (699)
Q Consensus 124 ~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~- 202 (699)
+.+.+ ....+.||||||... +..+...|+...+++|++ .++.....-.
T Consensus 55 ----------------~~~~~-~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v-~d~~~~~s~~~ 103 (206)
T 2bov_A 55 ----------------VVLDG-EEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCV-FSITEMESFAA 103 (206)
T ss_dssp ----------------EEETT-EEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEE-EETTCHHHHHH
T ss_pred ----------------EEECC-EEEEEEEEcCCChhh-------------hHHHHHHHHhhCCEEEEE-EECCCHHHHHH
Confidence 00100 112689999999542 234566788888855554 4444322111
Q ss_pred --HHH-HHHHhhCCCCCcEEEeecccccCCC
Q 005389 203 --DAL-QIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 203 --~~l-~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.++ .+.......+.++++|+||+|+.+.
T Consensus 104 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 104 TADFREQILRVKEDENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp HHHHHHHHHHHTTCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeccCcccc
Confidence 112 2233334457899999999999753
No 69
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.14 E-value=1.9e-10 Score=119.11 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=72.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCC-ccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (699)
...++|+|+|..|+|||||+|+|+|..+.+.+.. .+|+.+....
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~----------------------------------- 81 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVS----------------------------------- 81 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEE-----------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEE-----------------------------------
Confidence 3457899999999999999999999987554432 2333222111
Q ss_pred hhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhc--CCCeeEEEEecCC-Cccc
Q 005389 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPAN-SDLA 200 (699)
Q Consensus 124 ~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~-~d~~ 200 (699)
+.. ....++||||||+.+..... ..+.+.+..|+. .++++ |+|.+.+ ..+.
T Consensus 82 ------------------~~~-~~~~l~iiDTpG~~~~~~~~------~~~~~~i~~~~~~~~~d~i-l~v~~~d~~~~~ 135 (270)
T 1h65_A 82 ------------------RSR-AGFTLNIIDTPGLIEGGYIN------DMALNIIKSFLLDKTIDVL-LYVDRLDAYRVD 135 (270)
T ss_dssp ------------------EEE-TTEEEEEEECCCSEETTEEC------HHHHHHHHHHTTTCEECEE-EEEEESSCCCCC
T ss_pred ------------------Eee-CCeEEEEEECCCCCCCccch------HHHHHHHHHHhhcCCCCEE-EEEEeCCCCcCC
Confidence 111 11369999999986542111 122334445543 56644 4443332 2333
Q ss_pred chH--HHHHHHhhCCC--CCcEEEeecccccCCCc
Q 005389 201 NSD--ALQIAGIADPD--GYRTIGIITKLDIMDRG 231 (699)
Q Consensus 201 ~~~--~l~l~~~~dp~--g~rti~VlTK~D~~~~~ 231 (699)
..+ .++.+....+. ..++++|+||+|+.++.
T Consensus 136 ~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 136 NLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 322 23333332222 25899999999997643
No 70
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.14 E-value=1e-10 Score=113.52 Aligned_cols=118 Identities=16% Similarity=0.167 Sum_probs=69.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+.+......+ . ...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~--~~~-------------------------------------- 60 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG-I--DFK-------------------------------------- 60 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCC-C--EEE--------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcee-E--EEE--------------------------------------
Confidence 35799999999999999999999876332111000 0 000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---H
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (699)
...+.+.+ ....+.||||||.... +.+...|++.++++| +|.+++....-. .
T Consensus 61 ----------~~~~~~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~ 115 (189)
T 2gf9_A 61 ----------VKTVYRHD-KRIKLQIWDTAGQERY-------------RTITTAYYRGAMGFL-LMYDIANQESFAAVQD 115 (189)
T ss_dssp ----------EEEEEETT-EEEEEEEEECCSCCSS-------------CCSGGGGGTTCSEEE-EEEETTCHHHHHTHHH
T ss_pred ----------EEEEEECC-eEEEEEEEeCCCcHHH-------------hhhHHHhccCCCEEE-EEEECCCHHHHHHHHH
Confidence 00011110 1136899999996432 123456888898555 455554332211 2
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+..+......+.++++|+||+|+.+.
T Consensus 116 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 116 WATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHhcCCCCCEEEEEECcccccc
Confidence 233344444457899999999999753
No 71
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.13 E-value=1.9e-10 Score=111.93 Aligned_cols=117 Identities=17% Similarity=0.172 Sum_probs=68.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+.+......+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~------------------------------------------ 58 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF------------------------------------------ 58 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSE------------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccccee------------------------------------------
Confidence 34799999999999999999998876332211101000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---H
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (699)
....+.+.+ ....+.||||||... ++.+...|++.++++|++ .++.....-. .
T Consensus 59 ---------~~~~~~~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v-~d~~~~~s~~~~~~ 114 (191)
T 2a5j_A 59 ---------GARMVNIDG-KQIKLQIWDTAGQES-------------FRSITRSYYRGAAGALLV-YDITRRETFNHLTS 114 (191)
T ss_dssp ---------EEEEEEETT-EEEEEEEECCTTGGG-------------TSCCCHHHHTTCSEEEEE-EETTCHHHHHTHHH
T ss_pred ---------EEEEEEECC-EEEEEEEEECCCchh-------------hhhhHHHHhccCCEEEEE-EECCCHHHHHHHHH
Confidence 000111111 113689999999532 223455788889855554 4554322211 2
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.+..+......+.++++|+||+|+.+
T Consensus 115 ~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 115 WLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHhcCCCCCEEEEEECcccCC
Confidence 23334444455789999999999964
No 72
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.12 E-value=3.5e-10 Score=111.77 Aligned_cols=117 Identities=17% Similarity=0.268 Sum_probs=72.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+. ....++......
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~---------------------------------------- 64 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFM---------------------------------------- 64 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCCSEEEE----------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEE----------------------------------------
Confidence 468999999999999999999988652 222211110000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc---hH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SD 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~ 203 (699)
...+.+.+ ....+.||||||.. .++.+...|++.++++|++ .++.....- ..
T Consensus 65 ----------~~~~~~~~-~~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v-~D~~~~~s~~~~~~ 119 (201)
T 2ew1_A 65 ----------IKTVEING-EKVKLQIWDTAGQE-------------RFRSITQSYYRSANALILT-YDITCEESFRCLPE 119 (201)
T ss_dssp ----------EEEEEETT-EEEEEEEEEECCSG-------------GGHHHHGGGSTTCSEEEEE-EETTCHHHHHTHHH
T ss_pred ----------EEEEEECC-EEEEEEEEECCCcH-------------HHHHHHHHHHhcCCEEEEE-EECCCHHHHHHHHH
Confidence 00111111 01358999999942 3456677899999855554 454432211 22
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
++..++...+.+.++++|+||+|+.+
T Consensus 120 ~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 120 WLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 34445555566789999999999974
No 73
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.12 E-value=7.4e-11 Score=111.59 Aligned_cols=118 Identities=18% Similarity=0.206 Sum_probs=71.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+.+.... +.......
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~--------------------------------------- 45 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINP-TIGASFMT--------------------------------------- 45 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCC-CCSEEEEE---------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCC-ceeEEEEE---------------------------------------
Confidence 35799999999999999999999876332111 00000000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (699)
..+.+. .....+.||||||... .+.+...|++.++++|+ |.+++....-..
T Consensus 46 -----------~~~~~~-~~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~ 99 (170)
T 1z0j_A 46 -----------KTVQYQ-NELHKFLIWDTAGLER-------------FRALAPMYYRGSAAAII-VYDITKEETFSTLKN 99 (170)
T ss_dssp -----------EEEEET-TEEEEEEEEEECCSGG-------------GGGGTHHHHTTCSEEEE-EEETTCHHHHHHHHH
T ss_pred -----------EEEEEC-CeEEEEEEEcCCCchh-------------hhcccHhhCcCCCEEEE-EEECcCHHHHHHHHH
Confidence 000110 0113689999999642 23455678899985554 555544322222
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+..++.......++++|+||+|+.+.
T Consensus 100 ~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 100 WVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp HHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred HHHHHHHhCCCCCcEEEEEECCccccc
Confidence 233444454557889999999999753
No 74
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.12 E-value=2e-10 Score=111.46 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=68.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+.+......+ ....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~-~~~~---------------------------------------- 53 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG-VDFK---------------------------------------- 53 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCS-EEEE----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccc-eEEE----------------------------------------
Confidence 45899999999999999999999876332211110 0000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
...+.+.+ ....+.||||||... ++.+...|++.+++ +++|.++.....-.....
T Consensus 54 ----------~~~~~~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~ 108 (195)
T 1x3s_A 54 ----------VKTISVDG-NKAKLAIWDTAGQER-------------FRTLTPSYYRGAQG-VILVYDVTRRDTFVKLDN 108 (195)
T ss_dssp ----------EEEEEETT-EEEEEEEEEECSSGG-------------GCCSHHHHHTTCCE-EEEEEETTCHHHHHTHHH
T ss_pred ----------EEEEEECC-eEEEEEEEeCCCchh-------------hhhhhHHHhccCCE-EEEEEECcCHHHHHHHHH
Confidence 00011110 113689999999542 22345578888984 455555554322222223
Q ss_pred HHHhhC----CCCCcEEEeecccccCC
Q 005389 207 IAGIAD----PDGYRTIGIITKLDIMD 229 (699)
Q Consensus 207 l~~~~d----p~g~rti~VlTK~D~~~ 229 (699)
+...+. ..+.++++|+||+|+.+
T Consensus 109 ~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 109 WLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp HHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred HHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 333333 24688999999999953
No 75
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.11 E-value=2.3e-10 Score=110.13 Aligned_cols=118 Identities=16% Similarity=0.247 Sum_probs=69.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
....+|+|+|..++|||||+|+|++..+. ....+++.......
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~------------------------------------ 58 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFV-DDYDPTIEDSYLKH------------------------------------ 58 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEE------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCccceeEEE------------------------------------
Confidence 34557999999999999999999987653 22222221111000
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc---
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN--- 201 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~--- 201 (699)
+.+. .....+.||||||... +..+...|+++++.+|++ .++.....-
T Consensus 59 ---------------~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~ 108 (183)
T 3kkq_A 59 ---------------TEID-NQWAILDVLDTAGQEE-------------FSAMREQYMRTGDGFLIV-YSVTDKASFEHV 108 (183)
T ss_dssp ---------------EEET-TEEEEEEEEECCSCGG-------------GCSSHHHHHHHCSEEEEE-EETTCHHHHHTH
T ss_pred ---------------EEeC-CcEEEEEEEECCCchh-------------hHHHHHHHHhcCCEEEEE-EECCCHHHHHHH
Confidence 0000 0012478899999532 223445678888855554 444432111
Q ss_pred hHHH-HHHHhhCCCCCcEEEeecccccCC
Q 005389 202 SDAL-QIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 202 ~~~l-~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
...+ .+.+.....+.++++|+||+|+.+
T Consensus 109 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 109 DRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp HHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred HHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 1122 233444556789999999999975
No 76
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.11 E-value=4.7e-10 Score=107.41 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFL 73 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~l 73 (699)
..+|+|+|..++|||||+++|++..+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~ 33 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQ 33 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 357999999999999999999998763
No 77
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.11 E-value=4.8e-11 Score=113.86 Aligned_cols=118 Identities=18% Similarity=0.195 Sum_probs=69.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
-.+|+|+|..|+|||||+|+|++..+.+......+......
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------- 54 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK--------------------------------------- 54 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE---------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEE---------------------------------------
Confidence 35799999999999999999998776332211111100000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---H
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (699)
.+.+.+ ....+.||||||.. ....+...|+.+++.+| +|.+++....-. .
T Consensus 55 ------------~~~~~~-~~~~~~~~Dt~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 107 (179)
T 2y8e_A 55 ------------TMYLED-RTVRLQLWDTAGQE-------------RFRSLIPSYIRDSTVAV-VVYDITNTNSFHQTSK 107 (179)
T ss_dssp ------------EEEETT-EEEEEEEEEECCSG-------------GGGGGSHHHHHTCSEEE-EEEETTCHHHHHTHHH
T ss_pred ------------EEEECC-eEEEEEEEECCCcH-------------HHHHHHHHHhcCCCEEE-EEEECCCHHHHHHHHH
Confidence 011100 01258999999953 22345567888898555 455554322111 2
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+..+....+.+.++++|+||+|+.+.
T Consensus 108 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 108 WIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp HHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECCccccc
Confidence 222333333456899999999999753
No 78
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.11 E-value=1.1e-10 Score=110.12 Aligned_cols=117 Identities=17% Similarity=0.229 Sum_probs=69.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+|+|..++|||||+|+|++..+.+......+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~------------------------------------------ 41 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFL------------------------------------------ 41 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE------------------------------------------
Confidence 46999999999999999999988763322111110000
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA--- 204 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~--- 204 (699)
...+.+.+ ....+.||||||.. .+..+...|+++++++| +|.+++....-.+.
T Consensus 42 ---------~~~~~~~~-~~~~~~~~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~ 97 (170)
T 1ek0_A 42 ---------TQRVTINE-HTVKFEIWDTAGQE-------------RFASLAPXYYRNAQAAL-VVYDVTKPQSFIKARHW 97 (170)
T ss_dssp ---------EEEEEETT-EEEEEEEEEECCSG-------------GGGGGHHHHHTTCSEEE-EEEETTCHHHHHHHHHH
T ss_pred ---------EEEEEECC-EEEEEEEEECCCCh-------------hhhhhhhhhhccCcEEE-EEEecCChHHHHHHHHH
Confidence 00011100 11368999999943 23345667889998554 55555543222222
Q ss_pred HHHHHhhCCCCCcEEEeecccccCCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+..+......+.++++|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 98 VKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred HHHHHHhcCCCCcEEEEEECCCcccc
Confidence 22233333457899999999999864
No 79
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.11 E-value=1.2e-10 Score=121.10 Aligned_cols=121 Identities=22% Similarity=0.277 Sum_probs=71.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
-+.|+|+|.+|+|||||+|+|+|..+ .++.-+ +|..+..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~--------------------------------------- 42 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKE--------------------------------------- 42 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEE---------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEE---------------------------------------
Confidence 36799999999999999999999874 332211 1211110
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHh--cCCCeeEEEEecCCCcccchH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYI--KQPSCLILAVTPANSDLANSD 203 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi--~~~~~iIL~V~~a~~d~~~~~ 203 (699)
..+... ...+.||||||+.+.........+++ .+...|+ ..++ ++++|+++.... .
T Consensus 43 --------------~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~e---~i~~~~~~~~~~d-~ii~VvD~~~~~---~ 100 (274)
T 3i8s_A 43 --------------GQFSTT-DHQVTLVDLPGTYSLTTISSQTSLDE---QIACHYILSGDAD-LLINVVDASNLE---R 100 (274)
T ss_dssp --------------EEEECS-SCEEEEEECCCCSCSCC----CCHHH---HHHHHHHHHTCCS-EEEEEEEGGGHH---H
T ss_pred --------------EEEEeC-CCceEEEECcCCCccccccccCCHHH---HHHHHHHhhcCCC-EEEEEecCCChH---H
Confidence 111111 13589999999876542111112222 2344555 5787 555556655422 2
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.+.+..++...+.++++|+||+|+.+
T Consensus 101 ~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 101 NLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp HHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECccchh
Confidence 23444444444799999999999974
No 80
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.11 E-value=2.9e-10 Score=111.91 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=70.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+.. ...+++... +
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~-------------~---------------------------- 45 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVD-------------F---------------------------- 45 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCC-------------E----------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccce-------------e----------------------------
Confidence 4689999999999999999999987522 111110000 0
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (699)
....+.+.+ ....+.||||||.... +.+...|++.++. +++|.++.....-..
T Consensus 46 ---------~~~~~~~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~-vilv~d~~~~~s~~~~~~ 101 (206)
T 2bcg_Y 46 ---------KIKTVELDG-KTVKLQIWDTAGQERF-------------RTITSSYYRGSHG-IIIVYDVTDQESFNGVKM 101 (206)
T ss_dssp ---------EEEEEEETT-EEEEEEEECCTTTTTT-------------TCCCGGGGTTCSE-EEEEEETTCHHHHHHHHH
T ss_pred ---------EEEEEEECC-EEEEEEEEeCCChHHH-------------HHHHHHhccCCCE-EEEEEECcCHHHHHHHHH
Confidence 000111111 1136899999996432 2234568888884 455555554322222
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
++..+......+.++++|+||+|+.+.
T Consensus 102 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 102 WLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 233344444557899999999999753
No 81
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.11 E-value=1e-10 Score=113.06 Aligned_cols=120 Identities=19% Similarity=0.271 Sum_probs=69.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
...++|+|+|..|+|||||+|+|+|..+.+.....+|..+.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~--------------------------------------- 45 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKK--------------------------------------- 45 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEE---------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccce---------------------------------------
Confidence 34568999999999999999999997642111111111110
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhc--CCCeeEEEEecCCCcccch
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANS 202 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~ 202 (699)
...+.+. ...+.||||||........ ..+.+...|+. .++ ++++|.++... .
T Consensus 46 ------------~~~~~~~---~~~~~l~Dt~G~~~~~~~~-------~~~~~~~~~~~~~~~~-~~i~v~d~~~~---~ 99 (188)
T 2wjg_A 46 ------------EGEFEYN---GEKFKVVDLPGVYSLTANS-------IDEIIARDYIINEKPD-LVVNIVDATAL---E 99 (188)
T ss_dssp ------------EEEEEET---TEEEEEEECCCCSCCSSSS-------HHHHHHHHHHHHHCCS-EEEEEEEGGGH---H
T ss_pred ------------EEEEEeC---CcEEEEEECCCcCcccccc-------HHHHHHHHHHhccCCC-EEEEEecchhH---H
Confidence 0011111 1368999999986542111 11233445554 466 55666665432 1
Q ss_pred HHHHHHHhhCCCCCcEEEeecccccCC
Q 005389 203 DALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 203 ~~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
....+...+...+.++++|+||+|+..
T Consensus 100 ~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 100 RNLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 223344444446789999999999864
No 82
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.11 E-value=1.7e-10 Score=111.98 Aligned_cols=118 Identities=16% Similarity=0.193 Sum_probs=70.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+.+......+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~------------------------------------------ 57 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDF------------------------------------------ 57 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCE------------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEE------------------------------------------
Confidence 45799999999999999999998876322111100000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHH-HHHHHHhcCCCeeEEEEecCCCcccc---h
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIR-TMIMSYIKQPSCLILAVTPANSDLAN---S 202 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~-~lv~~yi~~~~~iIL~V~~a~~d~~~---~ 202 (699)
....+.+.+ ....+.||||||.. .++ .+...|+++++.+| +|.++.....- .
T Consensus 58 ---------~~~~~~~~~-~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~~d~ii-lv~D~~~~~s~~~~~ 113 (189)
T 1z06_A 58 ---------RERAVDIDG-ERIKIQLWDTAGQE-------------RFRKSMVQHYYRNVHAVV-FVYDMTNMASFHSLP 113 (189)
T ss_dssp ---------EEEEEEETT-EEEEEEEEECCCSH-------------HHHTTTHHHHHTTCCEEE-EEEETTCHHHHHTHH
T ss_pred ---------EEEEEEECC-EEEEEEEEECCCch-------------hhhhhhhHHHhcCCCEEE-EEEECcCHHHHHHHH
Confidence 000111111 11368999999932 344 66778999998554 55555432111 1
Q ss_pred HHHH-HHHhhCCCCCcEEEeecccccCCC
Q 005389 203 DALQ-IAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 203 ~~l~-l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.++. +.+.+...+.++++|+||+|+.+.
T Consensus 114 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 114 AWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp HHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 1222 233344567899999999999653
No 83
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.11 E-value=4.1e-10 Score=106.06 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=43.9
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhh----CCCCCcEEEeec
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA----DPDGYRTIGIIT 223 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----dp~g~rti~VlT 223 (699)
..+.||||||.. .++.+...|+++++++|+ |.+++....-.........+ ...+.++++|+|
T Consensus 44 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 109 (164)
T 1r8s_A 44 ISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLIF-VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 109 (164)
T ss_dssp CEEEEEECCCCG-------------GGHHHHHHHTTTCSEEEE-EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred EEEEEEEcCCCh-------------hhHHHHHHHhccCCEEEE-EEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEE
Confidence 368999999964 234566789999985555 55554432222222222222 223689999999
Q ss_pred ccccCCC
Q 005389 224 KLDIMDR 230 (699)
Q Consensus 224 K~D~~~~ 230 (699)
|+|+.+.
T Consensus 110 K~Dl~~~ 116 (164)
T 1r8s_A 110 KQDLPNA 116 (164)
T ss_dssp CTTSTTC
T ss_pred CcCCcCC
Confidence 9999753
No 84
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.10 E-value=1.2e-10 Score=110.33 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+.+......+......
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~--------------------------------------- 46 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTK--------------------------------------- 46 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEE---------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEE---------------------------------------
Confidence 35799999999999999999998875322111111000000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (699)
.+.+.+ ....+.||||||.. ....+...|+++++.+|++ .++.....-..
T Consensus 47 ------------~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~ 99 (170)
T 1z08_A 47 ------------KLNIGG-KRVNLAIWDTAGQE-------------RFHALGPIYYRDSNGAILV-YDITDEDSFQKVKN 99 (170)
T ss_dssp ------------EEESSS-CEEEEEEEECCCC--------------------CCSSTTCSEEEEE-EETTCHHHHHHHHH
T ss_pred ------------EEEECC-EEEEEEEEECCCcH-------------hhhhhHHHHhccCCEEEEE-EECcCHHHHHHHHH
Confidence 011100 11368999999943 2334555688888855554 45443222112
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
++..++...+.+.++++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 100 WVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp HHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCeEEEEEECcccccc
Confidence 122333333446899999999999753
No 85
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.10 E-value=5.2e-10 Score=105.95 Aligned_cols=113 Identities=16% Similarity=0.110 Sum_probs=68.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+... . +|.....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~-~t~~~~~---------------------------------------- 43 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVTT--I-PTIGFNV---------------------------------------- 43 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCCC--C-CCSSEEE----------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCc--C-CcCccce----------------------------------------
Confidence 46899999999999999999998765211 1 1111000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
..+.+. ...+.||||||... .+.+...|+++++++ ++|.+++....-.....
T Consensus 44 -----------~~~~~~---~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~i-i~v~d~~~~~s~~~~~~ 95 (171)
T 1upt_A 44 -----------ETVTYK---NLKFQVWDLGGLTS-------------IRPYWRCYYSNTDAV-IYVVDSCDRDRIGISKS 95 (171)
T ss_dssp -----------EEEEET---TEEEEEEEECCCGG-------------GGGGGGGGCTTCSEE-EEEEETTCCTTHHHHHH
T ss_pred -----------EEEEEC---CEEEEEEECCCChh-------------hhHHHHHHhccCCEE-EEEEECCCHHHHHHHHH
Confidence 011111 13689999999642 234456788889855 45555554322222222
Q ss_pred HHH-hhC---CCCCcEEEeecccccCCC
Q 005389 207 IAG-IAD---PDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 207 l~~-~~d---p~g~rti~VlTK~D~~~~ 230 (699)
... .+. ..+.++++|+||+|+.+.
T Consensus 96 ~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 96 ELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp HHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 222 222 257899999999999764
No 86
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.10 E-value=8.4e-10 Score=107.18 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=69.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+|+|..++|||||+|+|++..+.+ ...+++... +.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~-------------~~---------------------------- 60 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFNE-DMIPTVGFN-------------MR---------------------------- 60 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEE-------------EE----------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCCC-ccCCCCcee-------------EE----------------------------
Confidence 479999999999999999999877521 111111000 00
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (699)
. +.. ....+.||||||.. .++.+...|+++++++| +|.++.....-......
T Consensus 61 -----------~--~~~-~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii-~v~D~~~~~s~~~~~~~ 112 (188)
T 1zd9_A 61 -----------K--ITK-GNVTIKLWDIGGQP-------------RFRSMWERYCRGVSAIV-YMVDAADQEKIEASKNE 112 (188)
T ss_dssp -----------E--EEE-TTEEEEEEEECCSH-------------HHHTTHHHHHTTCSEEE-EEEETTCGGGHHHHHHH
T ss_pred -----------E--EEe-CCEEEEEEECCCCH-------------hHHHHHHHHHccCCEEE-EEEECCCHHHHHHHHHH
Confidence 0 000 01368999999942 45567778999998555 45555443222222222
Q ss_pred HHhh----CCCCCcEEEeecccccCCC
Q 005389 208 AGIA----DPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 208 ~~~~----dp~g~rti~VlTK~D~~~~ 230 (699)
...+ ...+.++++|+||+|+.+.
T Consensus 113 ~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 113 LHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHhCcccCCCCEEEEEECCCCccC
Confidence 2222 2257899999999999764
No 87
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.10 E-value=1.1e-10 Score=110.53 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=41.1
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc---hHHHHHHHhhCC--CCCcEEEeec
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDALQIAGIADP--DGYRTIGIIT 223 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~~l~l~~~~dp--~g~rti~VlT 223 (699)
.+.||||||..+. ..+...|+..++++|+++ +++....- ...+..+..... .+.++++|+|
T Consensus 52 ~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~n 117 (172)
T 2erx_A 52 TLQITDTTGSHQF-------------PAMQRLSISKGHAFILVY-SITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 117 (172)
T ss_dssp EEEEEECCSCSSC-------------HHHHHHHHHHCSEEEEEE-ETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEE
T ss_pred EEEEEECCCchhh-------------HHHHHHhcccCCEEEEEE-ECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEE
Confidence 5899999996532 345566788888555554 44432211 122233333322 3689999999
Q ss_pred ccccCCC
Q 005389 224 KLDIMDR 230 (699)
Q Consensus 224 K~D~~~~ 230 (699)
|+|+.+.
T Consensus 118 K~Dl~~~ 124 (172)
T 2erx_A 118 KCDESPS 124 (172)
T ss_dssp CGGGGGG
T ss_pred ccccccc
Confidence 9999753
No 88
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.09 E-value=3.9e-10 Score=116.23 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=72.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCC-ccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
.++|+|+|.+|+|||||+|+|+|..+. .+.- .+|...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~----------------------------------------- 42 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEK----------------------------------------- 42 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEE-----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEE-----------------------------------------
Confidence 357999999999999999999998642 2211 111111
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHh--cCCCeeEEEEecCCCcccchH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYI--KQPSCLILAVTPANSDLANSD 203 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi--~~~~~iIL~V~~a~~d~~~~~ 203 (699)
....+... ...+.||||||..+.... ..+ ..+...|+ ..++ ++++|+++.... .
T Consensus 43 ------------~~~~~~~~-~~~~~l~DtpG~~~~~~~----~~~---e~v~~~~~~~~~~d-~ii~V~D~t~~~---~ 98 (258)
T 3a1s_A 43 ------------KEGVFTYK-GYTINLIDLPGTYSLGYS----SID---EKIARDYLLKGDAD-LVILVADSVNPE---Q 98 (258)
T ss_dssp ------------EEEEEEET-TEEEEEEECCCCSSCCSS----SHH---HHHHHHHHHHSCCS-EEEEEEETTSCH---H
T ss_pred ------------EEEEEEEC-CeEEEEEECCCcCccCCC----CHH---HHHHHHHHhhcCCC-EEEEEeCCCchh---h
Confidence 01111111 136899999998754321 112 23444566 4676 556666665432 2
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.+.+..++...+.++++|+||+|+.+
T Consensus 99 ~~~~~~~l~~~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 99 SLYLLLEILEMEKKVILAMTAIDEAK 124 (258)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 24455566566899999999999864
No 89
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.09 E-value=1.8e-09 Score=116.48 Aligned_cols=125 Identities=22% Similarity=0.328 Sum_probs=71.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccC-CccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (699)
...+.|+|+|.+|+|||||+|+|+|..+ ..+. ..+|+.+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~------------------------------------ 207 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVG------------------------------------ 207 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEE------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEE------------------------------------
Confidence 4678999999999999999999999863 2211 1122221110
Q ss_pred hhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc----c
Q 005389 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD----L 199 (699)
Q Consensus 124 ~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d----~ 199 (699)
.+... ...+.++||||+...+... ...++ ...+..+...++ .+|+|.|+... +
T Consensus 208 -----------------~~~~~-~~~~~l~Dt~G~~~~~~~~-~~~~~---~~~~~~~~~~ad-~illV~D~s~~~~~~~ 264 (357)
T 2e87_A 208 -----------------QFEDG-YFRYQIIDTPGLLDRPISE-RNEIE---KQAILALRYLGN-LIIYIFDPSEHCGFPL 264 (357)
T ss_dssp -----------------EEEET-TEEEEEEECTTTSSSCSTT-SCHHH---HHHHHGGGGTCS-EEEEEECTTCTTSSCH
T ss_pred -----------------EEEec-CceEEEEeCCCccccchhh-hhHHH---HHHHHHHHhcCC-EEEEEEeCCccccCCH
Confidence 00000 1258999999997643222 11222 123334444566 55666665432 2
Q ss_pred cc-hHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 200 AN-SDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 200 ~~-~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.. ...+..+....+ +.++++|+||+|+.+.
T Consensus 265 ~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 265 EEQIHLFEEVHGEFK-DLPFLVVINKIDVADE 295 (357)
T ss_dssp HHHHHHHHHHHHHTT-TSCEEEEECCTTTCCH
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEEECcccCCh
Confidence 21 122333333333 7899999999999754
No 90
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.09 E-value=1.1e-10 Score=111.78 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=70.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+.+......+ .. +
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~-------------~---------------------------- 49 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIG-AA-------------F---------------------------- 49 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSC-CS-------------E----------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCce-eE-------------E----------------------------
Confidence 45799999999999999999998876332111100 00 0
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH--
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (699)
....+.+.+ ....+.||||||.. .++.+...|++.++.+| +|.+++....-...
T Consensus 50 ---------~~~~~~~~~-~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 105 (181)
T 2efe_B 50 ---------FSQTLAVND-ATVKFEIWDTAGQE-------------RYHSLAPMYYRGAAAAI-IVFDVTNQASFERAKK 105 (181)
T ss_dssp ---------EEEEEEETT-EEEEEEEEECCCSG-------------GGGGGTHHHHTTCSEEE-EEEETTCHHHHHHHHH
T ss_pred ---------EEEEEEECC-EEEEEEEEeCCCCh-------------hhhhhhHHHhccCCEEE-EEEECCCHHHHHHHHH
Confidence 000011110 11368999999943 23345567889898554 55555543222222
Q ss_pred -HHHHHhhCCCCCcEEEeecccccCCC
Q 005389 205 -LQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 -l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+..+......+.++++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 106 WVQELQAQGNPNMVMALAGNKSDLLDA 132 (181)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHhcCCCCcEEEEEECCccccc
Confidence 23333333447889999999999754
No 91
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.09 E-value=7.2e-10 Score=109.14 Aligned_cols=117 Identities=20% Similarity=0.217 Sum_probs=69.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+.+ ...++... .+.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~-------------~~~--------------------------- 67 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGV-------------DFT--------------------------- 67 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC------------------------CEE---------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcce-------------EEE---------------------------
Confidence 4689999999999999999999887521 11110000 000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---H
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (699)
...+.+.+ ....+.||||||.. .++.+...|++.++++|++ .++.....-. .
T Consensus 68 ----------~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~iilv-~D~~~~~s~~~~~~ 122 (201)
T 2hup_A 68 ----------MKTLEIQG-KRVKLQIWDTAGQE-------------RFRTITQSYYRSANGAILA-YDITKRSSFLSVPH 122 (201)
T ss_dssp ----------EEEEEETT-EEEEEEEECCTTCG-------------GGHHHHHHHHTTCSEEEEE-EETTBHHHHHTHHH
T ss_pred ----------EEEEEECC-EEEEEEEEECCCcH-------------hHHHHHHHHHhhCCEEEEE-EECCCHHHHHHHHH
Confidence 00111111 11368999999953 3445677899999855554 4544322211 2
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
++..+......+.++++|+||+|+.+
T Consensus 123 ~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 123 WIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHhcCCCCCEEEEEECCcccc
Confidence 23334444455789999999999975
No 92
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.08 E-value=1e-09 Score=105.36 Aligned_cols=122 Identities=21% Similarity=0.221 Sum_probs=70.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
.+|+|||.+|+|||||+|+|+|..+...+..+ +|+-...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~---------------------------------------- 44 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLR---------------------------------------- 44 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEE----------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceee----------------------------------------
Confidence 47999999999999999999998642122111 1111100
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc--hHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN--SDA 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~--~~~ 204 (699)
-.+.+.+ ..+.+|||||+.+.. ..++...-.....|++.++ ++++|.++...... ..+
T Consensus 45 -----------~~~~~~~---~~~~l~Dt~G~~~~~-----~~~~~~~~~~~~~~~~~ad-~~i~v~D~~~~~s~~~~~~ 104 (172)
T 2gj8_A 45 -----------EHIHIDG---MPLHIIDTAGLREAS-----DEVERIGIERAWQEIEQAD-RVLFMVDGTTTDAVDPAEI 104 (172)
T ss_dssp -----------EEEEETT---EEEEEEECCCCSCCS-----SHHHHHHHHHHHHHHHTCS-EEEEEEETTTCCCCSHHHH
T ss_pred -----------EEEEECC---eEEEEEECCCcccch-----hHHHHHHHHHHHHHHHhCC-EEEEEEECCCCCCHHHHHH
Confidence 0111111 247899999986431 1122111122346788888 45555555443222 223
Q ss_pred HHHHHhhCCCCCcEEEeecccccCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
+..+....+.+.++++|+||+|+.+
T Consensus 105 ~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 105 WPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp CHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred HHHHHHhcccCCCEEEEEECccCCc
Confidence 3344444455789999999999964
No 93
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.08 E-value=1.5e-10 Score=111.41 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=36.3
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---HHHHHHhhCCCCCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~dp~g~rti~VlTK~ 225 (699)
.+.||||||.. ..+.+...|+++++++|+ |.+++....-.. ++..+......+.++++|+||+
T Consensus 58 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 123 (183)
T 2fu5_C 58 KLQIWDTAGQE-------------RFRTITTAYYRGAMGIML-VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 123 (183)
T ss_dssp EEEEEEC----------------------CCTTTTTCSEEEE-EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC-
T ss_pred EEEEEcCCCCh-------------hhhhhHHHHHhcCCEEEE-EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 68999999953 234455678888985555 555544322122 2233334334578999999999
Q ss_pred ccCCC
Q 005389 226 DIMDR 230 (699)
Q Consensus 226 D~~~~ 230 (699)
|+.+.
T Consensus 124 Dl~~~ 128 (183)
T 2fu5_C 124 DVNDK 128 (183)
T ss_dssp -CCSC
T ss_pred cCCcc
Confidence 99753
No 94
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.08 E-value=2.3e-10 Score=112.18 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=68.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+|+|..++|||||+|+|++..+.+.... ++.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~------------------------------------------- 62 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISA-TLG------------------------------------------- 62 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCC-Ccc-------------------------------------------
Confidence 457899999999999999999998875211110 000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc---h
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---S 202 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~ 202 (699)
.+.....+.+.+ ....+.||||||... ++.+...|++.++++|+ |.++.....- .
T Consensus 63 -------~~~~~~~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iil-v~d~~~~~s~~~~~ 120 (199)
T 2p5s_A 63 -------VDFQMKTLIVDG-ERTVLQLWDTAGQER-------------FRSIAKSYFRKADGVLL-LYDVTCEKSFLNIR 120 (199)
T ss_dssp ---------CEEEEEEETT-EEEEEEEEECTTCTT-------------CHHHHHHHHHHCSEEEE-EEETTCHHHHHTHH
T ss_pred -------ceeEEEEEEECC-EEEEEEEEECCCCcc-------------hhhhHHHHHhhCCEEEE-EEECCChHHHHHHH
Confidence 000000111111 113589999999542 34556778888885555 4555433221 1
Q ss_pred HHHHHHHhhCCCCCcEEEeecccccCC
Q 005389 203 DALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 203 ~~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.++..++.....+.++++|+||+|+.+
T Consensus 121 ~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 121 EWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp HHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECccccc
Confidence 223444555555789999999999964
No 95
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.07 E-value=5.4e-10 Score=106.30 Aligned_cols=116 Identities=22% Similarity=0.308 Sum_probs=67.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
++|+++|..|+|||||+|+|+|..+ +.+.-+ +|+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~------------------------------------------ 40 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEK------------------------------------------ 40 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCC------------------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceee------------------------------------------
Confidence 5799999999999999999999764 222111 01100
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhc--CCCeeEEEEecCCCcccchHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~~~ 204 (699)
....+.+. ...+.+|||||........ ..+.+...|++ +++ ++++|.++.... ..
T Consensus 41 ---------~~~~~~~~---~~~l~i~Dt~G~~~~~~~~-------~~~~~~~~~~~~~~~~-~~i~v~D~~~~~---~~ 97 (165)
T 2wji_A 41 ---------KEGEFEYN---GEKFKVVDLPGVYSLTANS-------IDEIIARDYIINEKPD-LVVNIVDATALE---RN 97 (165)
T ss_dssp ---------CEEEEEET---TEEEEEEECCCCSCSSSSS-------HHHHHHHHHHHHHCCS-EEEEEEETTCHH---HH
T ss_pred ---------eEEEEEEC---CcEEEEEECCCcccCCCcc-------hhHHHHHHHHhcCCCC-EEEEEecCCchh---Hh
Confidence 00011111 1368999999986542111 12344556665 777 556666665421 11
Q ss_pred HHHHHhhCCCCCcEEEeecccccCC
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
..+..++...+.++++|.||+|+..
T Consensus 98 ~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 98 LYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEchHhcc
Confidence 2333333334789999999999863
No 96
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.07 E-value=3.4e-10 Score=107.15 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
+.+|+|+|..++|||||+|+|++..+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccC
Confidence 45799999999999999999998754
No 97
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.07 E-value=2.6e-10 Score=111.14 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=69.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+|+|..++|||||+|+|++..+ +....+++......
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 62 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSH-------------------------------------- 62 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEE--------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEE--------------------------------------
Confidence 345899999999999999999999875 22222211111000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--- 202 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--- 202 (699)
.+.+. .....+.||||||.. .+..+...|+++++++|+ |.++.....-.
T Consensus 63 -------------~~~~~-~~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 114 (194)
T 3reg_A 63 -------------VMKYK-NEEFILHLWDTAGQE-------------EYDRLRPLSYADSDVVLL-CFAVNNRTSFDNIS 114 (194)
T ss_dssp -------------EEEET-TEEEEEEEEEECCSG-------------GGTTTGGGGCTTCSEEEE-EEETTCHHHHHHHH
T ss_pred -------------EEEEC-CEEEEEEEEECCCcH-------------HHHHHhHhhccCCcEEEE-EEECCCHHHHHHHH
Confidence 00000 011257999999943 233455678889985555 45554332211
Q ss_pred -HHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 203 -DALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 203 -~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
..+..++... .+.++++|+||+|+.+.
T Consensus 115 ~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 115 TKWEPEIKHYI-DTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp HTHHHHHHHHC-TTSEEEEEEECGGGCCT
T ss_pred HHHHHHHHHhC-CCCCEEEEEEChhhccC
Confidence 1233333332 35899999999999854
No 98
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.07 E-value=3.5e-10 Score=110.74 Aligned_cols=117 Identities=12% Similarity=0.091 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+|+|..++|||||+++|++..+ +....++|......
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 59 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSA-------------------------------------- 59 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEE--------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEE--------------------------------------
Confidence 456899999999999999999998874 32222222211100
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH--
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD-- 203 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~-- 203 (699)
.+.+.+ ....+.||||||..... .+...|+.+++++| +|.+++....-.+
T Consensus 60 -------------~~~~~~-~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~ 111 (201)
T 2q3h_A 60 -------------VVSVDG-RPVRLQLCDTAGQDEFD-------------KLRPLCYTNTDIFL-LCFSVVSPSSFQNVS 111 (201)
T ss_dssp -------------EEEETT-EEEEEEEEECCCSTTCS-------------SSGGGGGTTCSEEE-EEEETTCHHHHHHHH
T ss_pred -------------EEEECC-EEEEEEEEECCCCHHHH-------------HHhHhhcCCCcEEE-EEEECCCHHHHHHHH
Confidence 000100 01257899999975331 23345888888554 5555543322222
Q ss_pred --HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 --ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 --~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
++..++...+ +.++++|+||+|+.+.
T Consensus 112 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 112 EKWVPEIRCHCP-KAPIILVGTQSDLRED 139 (201)
T ss_dssp HTHHHHHHHHCS-SSCEEEEEECGGGGGC
T ss_pred HHHHHHHHHhCC-CCCEEEEEECHhhhhc
Confidence 2223333333 6899999999999864
No 99
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.06 E-value=5.2e-10 Score=108.91 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=69.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+|+|..++|||||+++|++..+ +....+++......
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~---------------------------------------- 57 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAV---------------------------------------- 57 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEE----------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEE----------------------------------------
Confidence 4799999999999999999998865 22222222111100
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCccc--ch--H
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA--NS--D 203 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~--~~--~ 203 (699)
.+.+.+ ....+.||||||..+. +.+...|+++++++|+ |.++..... .. .
T Consensus 58 -----------~~~~~~-~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~ 111 (194)
T 2atx_A 58 -----------SVTVGG-KQYLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLI-CFSVVNPASFQNVKEE 111 (194)
T ss_dssp -----------EEESSS-CEEEEEEECCCCSSSS-------------TTTGGGGCTTCSEEEE-EEETTCHHHHHHHHHT
T ss_pred -----------EEEECC-EEEEEEEEECCCCcch-------------hHHHHHhcCCCCEEEE-EEECCCHHHHHHHHHH
Confidence 001000 1135899999996532 2334568888985555 455543321 11 2
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCCc
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
++..++...+ +.++++|+||+|+.+..
T Consensus 112 ~~~~~~~~~~-~~piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 112 WVPELKEYAP-NVPFLLIGTQIDLRDDP 138 (194)
T ss_dssp HHHHHHHHST-TCCEEEEEECTTSTTCH
T ss_pred HHHHHHHhCC-CCCEEEEEEChhhcccc
Confidence 2333444333 68999999999998653
No 100
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.06 E-value=2.8e-10 Score=109.34 Aligned_cols=117 Identities=16% Similarity=0.083 Sum_probs=69.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+++|++..+.. ...+++......
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~--------------------------------------- 44 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPG-EYIPTVFDNYSA--------------------------------------- 44 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCS-SCCCCSCCEEEE---------------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCC-CcCCcccceeEE---------------------------------------
Confidence 3479999999999999999999876522 211111111000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (699)
.+.+.+ ....+.||||||.... +.+...|++.++++|+ |.+++....-.+
T Consensus 45 ------------~~~~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~ 97 (186)
T 1mh1_A 45 ------------NVMVDG-KPVNLGLWDTAGQEDY-------------DRLRPLSYPQTDVSLI-CFSLVSPASFENVRA 97 (186)
T ss_dssp ------------EEEETT-EEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEE-EEETTCHHHHHHHHH
T ss_pred ------------EEEECC-EEEEEEEEECCCCHhH-------------HHHHHHhccCCcEEEE-EEECCChhhHHHHHH
Confidence 001111 1135889999996422 2344568888885555 455543322111
Q ss_pred -HHHHHHhhCCCCCcEEEeecccccCCCc
Q 005389 204 -ALQIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 204 -~l~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
.+..++...+ +.++++|+||+|+.+..
T Consensus 98 ~~~~~~~~~~~-~~piilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 98 KWYPEVRHHCP-NTPIILVGTKLDLRDDK 125 (186)
T ss_dssp THHHHHHHHST-TSCEEEEEECHHHHTCH
T ss_pred HHHHHHHHhCC-CCCEEEEeEcccccccc
Confidence 2334444434 68999999999998653
No 101
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.06 E-value=2.6e-10 Score=112.21 Aligned_cols=116 Identities=13% Similarity=0.107 Sum_probs=68.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+|+|..++|||||+|+|++..+. ....+++... +.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~-------------~~---------------------------- 63 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFEN-------------YI---------------------------- 63 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCC-------------CE----------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccce-------------EE----------------------------
Confidence 47999999999999999999988752 2211111100 00
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch----H
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS----D 203 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~----~ 203 (699)
..+.+.+ ....+.||||||... ++.+...|++.++.+|+ |.+++....-. .
T Consensus 64 ----------~~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~ 118 (201)
T 2gco_A 64 ----------ADIEVDG-KQVELALWDTAGQED-------------YDRLRPLSYPDTDVILM-CFSIDSPDSLENIPEK 118 (201)
T ss_dssp ----------EEEEETT-EEEEEEEECCCCSGG-------------GTTTGGGGCTTCSEEEE-EEETTCHHHHHHHHHT
T ss_pred ----------EEEEECC-EEEEEEEEECCCchh-------------HHHHHHHhcCCCCEEEE-EEECCCHHHHHHHHHH
Confidence 0011111 113689999999532 22344468888885554 44544322111 2
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCCc
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
++..++...+ +.++++|+||+|+.+..
T Consensus 119 ~~~~~~~~~~-~~piilv~nK~Dl~~~~ 145 (201)
T 2gco_A 119 WTPEVKHFCP-NVPIILVGNKKDLRQDE 145 (201)
T ss_dssp HHHHHHHHST-TCCEEEEEECGGGTTCH
T ss_pred HHHHHHHhCC-CCCEEEEEecHHhhcCc
Confidence 2334444433 68999999999998653
No 102
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.06 E-value=3.3e-10 Score=110.46 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=43.4
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---HHHHHHhhCCCCCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~dp~g~rti~VlTK~ 225 (699)
.+.||||||.. ..+.+...|++.++++|+ |.+++....-.. ++..++...+.+.++++|+||+
T Consensus 73 ~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~iil-V~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~ 138 (192)
T 2fg5_A 73 KFLIWDTAGQE-------------RFHSLAPMYYRGSAAAVI-VYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138 (192)
T ss_dssp EEEEEEECCSG-------------GGGGGTHHHHTTCSEEEE-EEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEcCCCch-------------hhHhhhHHhhccCCEEEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 68999999943 233455678899985555 455543322222 2333445555578999999999
Q ss_pred ccCC
Q 005389 226 DIMD 229 (699)
Q Consensus 226 D~~~ 229 (699)
|+.+
T Consensus 139 Dl~~ 142 (192)
T 2fg5_A 139 DLSD 142 (192)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9974
No 103
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.06 E-value=1.5e-09 Score=105.15 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=42.1
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCccc--chHH----HHHHHhh--CCCCCcEEE
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA--NSDA----LQIAGIA--DPDGYRTIG 220 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~--~~~~----l~l~~~~--dp~g~rti~ 220 (699)
.+.||||||.... +.+...|+++++++|+ |.++..... +.+. .....++ ...+.++++
T Consensus 75 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piil 140 (198)
T 3t1o_A 75 RFHLYTVPGQVFY-------------NASRKLILRGVDGIVF-VADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVI 140 (198)
T ss_dssp EEEEEECCSCCSC-------------SHHHHHHTTTCCEEEE-EEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEE
T ss_pred EEEEEeCCChHHH-------------HHHHHHHHhcCCEEEE-EEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEE
Confidence 6899999996432 3455678999985555 555542211 1111 2233333 235789999
Q ss_pred eecccccCCC
Q 005389 221 IITKLDIMDR 230 (699)
Q Consensus 221 VlTK~D~~~~ 230 (699)
|+||+|+.+.
T Consensus 141 v~NK~Dl~~~ 150 (198)
T 3t1o_A 141 QVNKRDLPDA 150 (198)
T ss_dssp EEECTTSTTC
T ss_pred EEEchhcccc
Confidence 9999999753
No 104
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.06 E-value=6.2e-10 Score=110.75 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=57.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+ +....+++......
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~--------------------------------------- 73 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYMV--------------------------------------- 73 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEE---------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEEE---------------------------------------
Confidence 35799999999999999999998865 22221111110000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (699)
.+.+.+ ....+.||||||.. .++.+...|+..++++|+ |.+++....-..
T Consensus 74 ------------~~~~~~-~~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~ 126 (214)
T 2j1l_A 74 ------------NLQVKG-KPVHLHIWDTAGQD-------------DYDRLRPLFYPDASVLLL-CFDVTSPNSFDNIFN 126 (214)
T ss_dssp ------------EEEETT-EEEEEEEEEC----------------------------CEEEEEE-EEETTCHHHHHHHHH
T ss_pred ------------EEEECC-EEEEEEEEECCCch-------------hhhHHHHHHhccCCEEEE-EEECcCHHHHHHHHH
Confidence 011111 01258999999943 334556678888885554 555543222111
Q ss_pred -HHHHHHhhCCCCCcEEEeecccccCCCc
Q 005389 204 -ALQIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 204 -~l~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
++..++... .+.++++|+||+|+.+..
T Consensus 127 ~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 127 RWYPEVNHFC-KKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp THHHHHHHHC-SSCCEEEEEECGGGGSCH
T ss_pred HHHHHHHHhC-CCCCEEEEEEChhhhccc
Confidence 223333333 368999999999998653
No 105
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.06 E-value=9.7e-11 Score=115.12 Aligned_cols=118 Identities=16% Similarity=0.174 Sum_probs=67.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+|+|..++|||||+|+|++..+. ....+++...... ...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~-------------~~~---------------------- 66 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSK-------------IVT---------------------- 66 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEE-------------EEC----------------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEE-------------EEE----------------------
Confidence 4568999999999999999999998763 2221212111000 000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
+. .....+.||||||..... .+...|++.++.+|++ .++.....-....
T Consensus 67 ----------------~~-~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~ 115 (201)
T 3oes_A 67 ----------------LG-KDEFHLHLVDTAGQDEYS-------------ILPYSFIIGVHGYVLV-YSVTSLHSFQVIE 115 (201)
T ss_dssp ---------------------CEEEEEEEECCCCTTC-------------CCCGGGTTTCCEEEEE-EETTCHHHHHHHH
T ss_pred ----------------EC-CEEEEEEEEECCCccchH-------------HHHHHHHhcCCEEEEE-EeCCCHHHHHHHH
Confidence 00 011358999999965331 2344688888855554 4544322222222
Q ss_pred HHHHhh----CCCCCcEEEeecccccCCC
Q 005389 206 QIAGIA----DPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 206 ~l~~~~----dp~g~rti~VlTK~D~~~~ 230 (699)
.+...+ ...+.++++|+||+|+.+.
T Consensus 116 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 116 SLYQKLHEGHGKTRVPVVLVGNKADLSPE 144 (201)
T ss_dssp HHHHHHHC-----CCCEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccCccc
Confidence 222332 2346899999999999753
No 106
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.04 E-value=2.3e-10 Score=113.01 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=69.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+|+|..|+|||||+++|++..+... ...++.......
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~------------------------------------- 70 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGE-YIPTVFDNYSAN------------------------------------- 70 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC--CCCCSEEEEEEE-------------------------------------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCC-cCCeecceeEEE-------------------------------------
Confidence 456899999999999999999998765322 111111110000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH--
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD-- 203 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~-- 203 (699)
+.+.+ ....+.||||||... +..+...|+++++++|+ |.+++....-.+
T Consensus 71 --------------~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 121 (204)
T 4gzl_A 71 --------------VMVDG-KPVNLGLWDTAGLED-------------YDRLRPLSYPQTDVFLI-CFSLVSPASFENVR 121 (204)
T ss_dssp --------------EECC--CEEEEEEEEECCSGG-------------GTTTGGGGCTTCSEEEE-EEETTCHHHHHHHH
T ss_pred --------------EEECC-EEEEEEEEECCCchh-------------hHHHHHHHhccCCEEEE-EEECCCHHHHHHHH
Confidence 00000 112577999999642 23445568889985555 455543322222
Q ss_pred --HHHHHHhhCCCCCcEEEeecccccCCCcc
Q 005389 204 --ALQIAGIADPDGYRTIGIITKLDIMDRGT 232 (699)
Q Consensus 204 --~l~l~~~~dp~g~rti~VlTK~D~~~~~~ 232 (699)
.+..++... .+.++++|+||+|+.+...
T Consensus 122 ~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 122 AKWYPEVRHHC-PNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp HTHHHHHHHHC-SSCCEEEEEECHHHHTCHH
T ss_pred HHHHHHHHHhC-CCCCEEEEEechhhccchh
Confidence 223333333 3689999999999986543
No 107
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.04 E-value=7.3e-10 Score=115.13 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=70.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCC-ccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
.++|+++|.+|+|||||+|+|+|..+. ++.- .+|..+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~----------------------------------------- 40 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVER----------------------------------------- 40 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSC-----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEE-----------------------------------------
Confidence 457999999999999999999997632 2211 111111
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhc--CCCeeEEEEecCCCcccchH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSD 203 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~~ 203 (699)
....+.. ...+.||||||..+..... .+ ..+...|+. .++ ++++|+++.....
T Consensus 41 ------------~~~~~~~--~~~l~l~DtpG~~~~~~~~----~~---e~v~~~~~~~~~~d-~vi~V~D~t~~e~--- 95 (272)
T 3b1v_A 41 ------------KSGLVKK--NKDLEIQDLPGIYSMSPYS----PE---AKVARDYLLSQRAD-SILNVVDATNLER--- 95 (272)
T ss_dssp ------------EEEECTT--CTTEEEEECCCCSCSSCSS----HH---HHHHHHHHHTTCCS-EEEEEEEGGGHHH---
T ss_pred ------------EEEEEec--CCeEEEEECCCcCccCCCC----hH---HHHHHHHHhcCCCC-EEEEEecCCchHh---
Confidence 1111111 2369999999987542111 11 234456665 576 5556666554221
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
.+.+..++...+.++++|+||+|+..
T Consensus 96 ~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 96 NLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp HHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 23444444446799999999999864
No 108
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.04 E-value=7.9e-10 Score=109.46 Aligned_cols=118 Identities=18% Similarity=0.171 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
..++|+|+|..++|||||+++|++..+.+... +|.... .
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~--~~~~~~-------------~-------------------------- 44 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT--SITDSS-------------A-------------------------- 44 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC--CCSCEE-------------E--------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC--Ccceee-------------E--------------------------
Confidence 35789999999999999999999887532221 111100 0
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHH-HHHHHhcCCCeeEEEEecCCCccc-chH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRT-MIMSYIKQPSCLILAVTPANSDLA-NSD 203 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~-lv~~yi~~~~~iIL~V~~a~~d~~-~~~ 203 (699)
.+.+.+.....+.||||||.. .++. +...|++.++++|+ |.++..... ...
T Consensus 45 -------------~~~~~~~~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~~i~-v~d~~~~~~~~~~ 97 (214)
T 2fh5_B 45 -------------IYKVNNNRGNSLTLIDLPGHE-------------SLRFQLLDRFKSSARAVVF-VVDSAAFQREVKD 97 (214)
T ss_dssp -------------EEECSSTTCCEEEEEECCCCH-------------HHHHHHHHHHGGGEEEEEE-EEETTTHHHHHHH
T ss_pred -------------EEEecCCCccEEEEEECCCCh-------------hHHHHHHHHHHhhCCEEEE-EEECCCcCHHHHH
Confidence 011111112368999999953 3344 67788999985555 455543111 111
Q ss_pred HHHHHH----h--hCCCCCcEEEeecccccCCCc
Q 005389 204 ALQIAG----I--ADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 204 ~l~l~~----~--~dp~g~rti~VlTK~D~~~~~ 231 (699)
...... . ....+.++++|+||+|+.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 98 VAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 222211 1 234468999999999998653
No 109
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.04 E-value=9.9e-10 Score=113.26 Aligned_cols=124 Identities=16% Similarity=0.212 Sum_probs=71.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCC-ccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
.-.+|+|+|..++|||||+|+|+|..+...+.. .+|.......
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~------------------------------------ 78 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVS------------------------------------ 78 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEE------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEE------------------------------------
Confidence 456899999999999999999999876433332 1222221111
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhc--CCCeeEEEEecCCC-cccc
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANS-DLAN 201 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~-d~~~ 201 (699)
+... ...++||||||+.+.... .+...+.+.+++. .++ ++|+|.+.+. .+..
T Consensus 79 -----------------~~~~-~~~l~liDTpG~~~~~~~------~~~~~~~i~~~l~~~~~~-~il~V~~~d~~~~~~ 133 (262)
T 3def_A 79 -----------------RTMG-GFTINIIDTPGLVEAGYV------NHQALELIKGFLVNRTID-VLLYVDRLDVYAVDE 133 (262)
T ss_dssp -----------------EEET-TEEEEEEECCCSEETTEE------CHHHHHHHHHHTTTCEEC-EEEEEEESSCSCCCH
T ss_pred -----------------EEEC-CeeEEEEECCCCCCcccc------hHHHHHHHHHHHhcCCCC-EEEEEEcCCCCCCCH
Confidence 1111 126999999998654211 1233444555554 445 5555544332 2333
Q ss_pred h--HHHHHHHhhCCC--CCcEEEeecccccCCC
Q 005389 202 S--DALQIAGIADPD--GYRTIGIITKLDIMDR 230 (699)
Q Consensus 202 ~--~~l~l~~~~dp~--g~rti~VlTK~D~~~~ 230 (699)
. ..++.++..... ..++++|+||+|+.+.
T Consensus 134 ~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 134 LDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 2 234444443222 2489999999999744
No 110
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.04 E-value=6e-10 Score=107.54 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=70.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+|+|..++|||||+|+|++.. +....+ |.....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~-t~~~~~--------------------------------------- 54 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTISP-TLGFNI--------------------------------------- 54 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCCC-CSSEEE---------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCcccc-cCccce---------------------------------------
Confidence 45689999999999999999999876 222211 111000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
..+.+ +...+.||||||.. ..+.+...|+++++++ ++|.+++....-.+..
T Consensus 55 ------------~~~~~---~~~~~~~~Dt~G~~-------------~~~~~~~~~~~~~d~i-i~v~d~~~~~s~~~~~ 105 (186)
T 1ksh_A 55 ------------KTLEH---RGFKLNIWDVGGQK-------------SLRSYWRNYFESTDGL-IWVVDSADRQRMQDCQ 105 (186)
T ss_dssp ------------EEEEE---TTEEEEEEEECCSH-------------HHHTTGGGGCTTCSEE-EEEEETTCGGGHHHHH
T ss_pred ------------EEEEE---CCEEEEEEECCCCH-------------hHHHHHHHHhcCCCEE-EEEEECcCHHHHHHHH
Confidence 01111 12368999999952 3455667889999855 4555555433222222
Q ss_pred HHHHhh----CCCCCcEEEeecccccCCC
Q 005389 206 QIAGIA----DPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 206 ~l~~~~----dp~g~rti~VlTK~D~~~~ 230 (699)
.....+ ...+.++++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 106 RELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 222222 2246899999999999764
No 111
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.04 E-value=1.3e-10 Score=115.56 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=42.4
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---HHHHHHHhhCCCCCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~dp~g~rti~VlTK~ 225 (699)
.+.||||||.... ..+...|+..++++| +|.+++....-. .++..+....+.+.++++|+||+
T Consensus 62 ~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (218)
T 4djt_A 62 KFNVWDTAGQEKK-------------AVLKDVYYIGASGAI-LFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKI 127 (218)
T ss_dssp EEEEEEECSGGGT-------------SCCCHHHHTTCSEEE-EEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECT
T ss_pred EEEEEecCCchhh-------------chHHHHHhhcCCEEE-EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 5899999996432 123345788888554 455555432222 22344555555678999999999
Q ss_pred ccCCC
Q 005389 226 DIMDR 230 (699)
Q Consensus 226 D~~~~ 230 (699)
|+.+.
T Consensus 128 Dl~~~ 132 (218)
T 4djt_A 128 DIKNR 132 (218)
T ss_dssp TCC--
T ss_pred CCccc
Confidence 99753
No 112
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.04 E-value=2.8e-10 Score=110.55 Aligned_cols=115 Identities=19% Similarity=0.226 Sum_probs=69.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+.+....+++. ...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~---------------------------------------- 59 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSI---------------------------------------- 59 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEE----------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeE----------------------------------------
Confidence 457999999999999999999998632332221111 100
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH--
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (699)
..+.+. ...+.||||||... ++.+...|+++++++ ++|.+++....-.+.
T Consensus 60 -----------~~~~~~---~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~i-i~v~d~~~~~s~~~~~~ 111 (190)
T 2h57_A 60 -----------EKFKSS---SLSFTVFDMSGQGR-------------YRNLWEHYYKEGQAI-IFVIDSSDRLRMVVAKE 111 (190)
T ss_dssp -----------EEEECS---SCEEEEEEECCSTT-------------TGGGGGGGGGGCSEE-EEEEETTCHHHHHHHHH
T ss_pred -----------EEEEEC---CEEEEEEECCCCHH-------------HHHHHHHHHhcCCEE-EEEEECCCHHHHHHHHH
Confidence 011111 13699999999542 234455788889854 455555543221221
Q ss_pred -H-HHHHhhCC--CCCcEEEeecccccCCC
Q 005389 205 -L-QIAGIADP--DGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 -l-~l~~~~dp--~g~rti~VlTK~D~~~~ 230 (699)
+ .+.+.... .+.++++|+||+|+.+.
T Consensus 112 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 112 ELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp HHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred HHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 1 12222222 47899999999999753
No 113
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.04 E-value=4e-10 Score=111.34 Aligned_cols=115 Identities=14% Similarity=0.129 Sum_probs=66.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
.+|+|+|..++|||||+|+|++..+. ....+++......
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~---------------------------------------- 64 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVA---------------------------------------- 64 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEE----------------------------------------
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEE----------------------------------------
Confidence 47999999999999999999998752 1111111110000
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcc--cc--hH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL--AN--SD 203 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~--~~--~~ 203 (699)
.+.+.+ ....+.||||||.... ..+...|+.+++++|++ .+++... .. ..
T Consensus 65 -----------~~~~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~~ 118 (207)
T 2fv8_A 65 -----------DIEVDG-KQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMC-FSVDSPDSLENIPEK 118 (207)
T ss_dssp -----------EEEETT-EEEEEEEEECTTCTTC-------------TTTGGGGCTTCCEEEEE-EETTCHHHHHHHHHT
T ss_pred -----------EEEECC-EEEEEEEEECCCcHHH-------------HHHHHhhcCCCCEEEEE-EECCCHHHHHHHHHH
Confidence 011110 0136899999996432 23344688888855554 4444321 11 12
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+..++... .+.++++|+||+|+.+.
T Consensus 119 ~~~~~~~~~-~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 119 WVPEVKHFC-PNVPIILVANKKDLRSD 144 (207)
T ss_dssp HHHHHHHHS-TTCCEEEEEECGGGGGC
T ss_pred HHHHHHHhC-CCCCEEEEEEchhhhcc
Confidence 233344433 26899999999999864
No 114
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.04 E-value=2e-10 Score=123.13 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
+|.|+|||.+|||||||||+|++..
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC
Confidence 6889999999999999999999875
No 115
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.03 E-value=2.3e-10 Score=107.93 Aligned_cols=67 Identities=13% Similarity=0.110 Sum_probs=41.7
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---HHHHHhhCCCCCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l~l~~~~dp~g~rti~VlTK~ 225 (699)
.+.||||||.. ..+.+...|++.++++| +|.+++....-... +..+........++++|+||+
T Consensus 56 ~~~~~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~ 121 (170)
T 1r2q_A 56 KFEIWDTAGQE-------------RYHSLAPMYYRGAQAAI-VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121 (170)
T ss_dssp EEEEEEECCSG-------------GGGGGHHHHHTTCSEEE-EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEeCCCcH-------------HhhhhhHHhccCCCEEE-EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 68999999953 23345667889998555 45555443221222 222333334467899999999
Q ss_pred ccCC
Q 005389 226 DIMD 229 (699)
Q Consensus 226 D~~~ 229 (699)
|+.+
T Consensus 122 Dl~~ 125 (170)
T 1r2q_A 122 DLAN 125 (170)
T ss_dssp GGGG
T ss_pred cCcc
Confidence 9965
No 116
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.03 E-value=5.2e-10 Score=108.34 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=67.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+|+|..++|||||+|+|++..+.. . ..+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~------------~~t~~------------------------------- 49 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVH--T------------SPTIG------------------------------- 49 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEE--E------------ECCSC-------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc--C------------cCCCc-------------------------------
Confidence 45789999999999999999999876521 0 00100
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
+. ...+.+. ...+.||||||..+ .+.+...|+++++++|+ |.+++....-....
T Consensus 50 -------~~--~~~~~~~---~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~-v~d~~~~~s~~~~~ 103 (187)
T 1zj6_A 50 -------SN--VEEIVIN---NTRFLMWDIGGQES-------------LRSSWNTYYTNTEFVIV-VVDSTDRERISVTR 103 (187)
T ss_dssp -------SS--CEEEEET---TEEEEEEECCC-----------------CGGGHHHHTTCCEEEE-EEETTCTTTHHHHH
T ss_pred -------cc--eEEEEEC---CEEEEEEECCCCHh-------------HHHHHHHHhcCCCEEEE-EEeCCCHHHHHHHH
Confidence 00 0011111 14689999999642 33455678899985554 55554432222222
Q ss_pred HHHHhhC----CCCCcEEEeecccccCCC
Q 005389 206 QIAGIAD----PDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 206 ~l~~~~d----p~g~rti~VlTK~D~~~~ 230 (699)
.....+. ..+.++++|+||+|+.+.
T Consensus 104 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 104 EELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp HHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 2222221 257899999999999753
No 117
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.03 E-value=1.7e-10 Score=110.13 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
..+|+|+|..++|||||+|+|++..+
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~ 31 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETF 31 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcC
Confidence 45799999999999999999998765
No 118
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.02 E-value=5.5e-10 Score=107.25 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=66.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+|+|..++|||||+|+|++..+..... | .
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~---t-----------~-------------------------------- 50 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKP---T-----------I-------------------------------- 50 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECS---S-----------T--------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCC---c-----------C--------------------------------
Confidence 45789999999999999999999765411110 0 0
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
++. ...+.+. ...+.++||||.... +.+...|+.+++ ++++|.+++....-.+..
T Consensus 51 ------~~~--~~~~~~~---~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~ 105 (183)
T 1moz_A 51 ------GFN--VETLSYK---NLKLNVWDLGGQTSI-------------RPYWRCYYADTA-AVIFVVDSTDKDRMSTAS 105 (183)
T ss_dssp ------TCC--EEEEEET---TEEEEEEEEC----C-------------CTTGGGTTTTEE-EEEEEEETTCTTTHHHHH
T ss_pred ------ccc--eEEEEEC---CEEEEEEECCCCHhH-------------HHHHHHHhccCC-EEEEEEECCCHHHHHHHH
Confidence 000 0011111 146899999997532 223456788887 555555555432222323
Q ss_pred HHHHhhC----CCCCcEEEeecccccCCC
Q 005389 206 QIAGIAD----PDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 206 ~l~~~~d----p~g~rti~VlTK~D~~~~ 230 (699)
.....+. ..+.++++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 106 KELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp HHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred HHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 3333332 357899999999999753
No 119
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.02 E-value=1.3e-09 Score=106.36 Aligned_cols=116 Identities=15% Similarity=0.156 Sum_probs=68.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+|+|..++|||||+|+|++..+.+... +++......
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~t~~~~~~~-------------------------------------- 67 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYD-PTLESTYRH-------------------------------------- 67 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCC-TTCCEEEEE--------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccC-CCCCceEEE--------------------------------------
Confidence 35689999999999999999999987632211 111100000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH--
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD-- 203 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~-- 203 (699)
.+.+.+ ....+.||||||... ..+...|++.++++|+ |.+++....-.+
T Consensus 68 -------------~~~~~~-~~~~~~l~Dt~G~~~--------------~~~~~~~~~~~d~iil-v~D~~~~~s~~~~~ 118 (196)
T 2atv_A 68 -------------QATIDD-EVVSMEILDTAGQED--------------TIQREGHMRWGEGFVL-VYDITDRGSFEEVL 118 (196)
T ss_dssp -------------EEEETT-EEEEEEEEECCCCCC--------------CHHHHHHHHHCSEEEE-EEETTCHHHHHTHH
T ss_pred -------------EEEECC-EEEEEEEEECCCCCc--------------ccchhhhhccCCEEEE-EEECcCHHHHHHHH
Confidence 001100 113589999999753 2345567888885555 445443211111
Q ss_pred -HHHHHHh-hCCCCCcEEEeecccccCC
Q 005389 204 -ALQIAGI-ADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 204 -~l~l~~~-~dp~g~rti~VlTK~D~~~ 229 (699)
.+..+.. ....+.++++|+||+|+.+
T Consensus 119 ~~~~~i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 119 PLKNILDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp HHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred HHHHHHHHhhCCCCCcEEEEEECccccc
Confidence 1222222 3345789999999999975
No 120
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.02 E-value=2.6e-10 Score=109.51 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
.++|+|+|..++|||||+|+|++..+. ....+++.......
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~-------------------------------------- 46 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFV-DSYDPTIENTFTKL-------------------------------------- 46 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEE--------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCCccccEEEE--------------------------------------
Confidence 468999999999999999999976652 22222222111000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH--
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (699)
+.+.+ ....+.||||||..... .+...|++.++++|+++ +......-...
T Consensus 47 -------------~~~~~-~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~ 98 (181)
T 3t5g_A 47 -------------ITVNG-QEYHLQLVDTAGQDEYS-------------IFPQTYSIDINGYILVY-SVTSIKSFEVIKV 98 (181)
T ss_dssp -------------EEETT-EEEEEEEEECCCCCTTC-------------CCCGGGTTTCSEEEEEE-ETTCHHHHHHHHH
T ss_pred -------------EEECC-EEEEEEEEeCCCchhhh-------------HHHHHHHhcCCEEEEEE-ECCCHHHHHHHHH
Confidence 00000 01358999999975431 23335788888555554 44432111111
Q ss_pred -H-HHHHhhCCCCCcEEEeecccccCCC
Q 005389 205 -L-QIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 -l-~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+ .+.+.....+.++++|+||+|+.+.
T Consensus 99 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 126 (181)
T 3t5g_A 99 IHGKLLDMVGKVQIPIMLVGNKKDLHME 126 (181)
T ss_dssp HHHHHHHHC----CCEEEEEECTTCTTT
T ss_pred HHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 1 2334444557899999999999643
No 121
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.00 E-value=8.8e-10 Score=107.70 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=66.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+|+|..++|||||+|+|++..+.. . .+|....
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~--~-~~t~~~~---------------------------------------- 64 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT--T-IPTIGFN---------------------------------------- 64 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE--E-EEETTEE----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc--c-CCcCcee----------------------------------------
Confidence 34689999999999999999999876521 0 1111100
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
...+.. ....+.||||||... ++.+...|+++++++|+ |.+++....-....
T Consensus 65 -----------~~~~~~---~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~iil-v~D~~~~~s~~~~~ 116 (192)
T 2b6h_A 65 -----------VETVEY---KNICFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIF-VVDSNDRERVQESA 116 (192)
T ss_dssp -----------EEEEEE---TTEEEEEEECC------------------CTTHHHHHHTCCEEEE-EEETTCGGGHHHHH
T ss_pred -----------EEEEEE---CCEEEEEEECCCCHh-------------HHHHHHHHhccCCEEEE-EEECCCHHHHHHHH
Confidence 001111 113689999999642 33455678889985554 55555432222222
Q ss_pred HHHHhh----CCCCCcEEEeecccccCCC
Q 005389 206 QIAGIA----DPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 206 ~l~~~~----dp~g~rti~VlTK~D~~~~ 230 (699)
.....+ ...+.++++|+||+|+.+.
T Consensus 117 ~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 117 DELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 222222 2246899999999999754
No 122
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.00 E-value=4.5e-10 Score=109.39 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
...+|+|+|..++|||||+|+|++..+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~ 33 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTF 33 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCC
Confidence 346899999999999999999998765
No 123
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.00 E-value=5.6e-10 Score=111.68 Aligned_cols=117 Identities=17% Similarity=0.181 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+........+...
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~------------------------------------------ 50 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEF------------------------------------------ 50 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSE------------------------------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccccee------------------------------------------
Confidence 46899999999999999999999876322111000000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH--
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (699)
....+.+.+ ....+.||||||.... +.+...|++.++. +++|.++.....-.+.
T Consensus 51 ---------~~~~~~~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~-vilV~D~~~~~s~~~~~~ 106 (223)
T 3cpj_B 51 ---------ATRTLEIEG-KRIKAQIWDTAGQERY-------------RAITSAYYRGAVG-ALIVYDISKSSSYENCNH 106 (223)
T ss_dssp ---------EEEEEEETT-EEEEEEEECCTTTTTT-------------TCCCGGGTTTCCE-EEEEEC-CCHHHHHHHHH
T ss_pred ---------EEEEEEECC-EEEEEEEEECCCccch-------------hhhHHHHhccCCE-EEEEEeCCCHHHHHHHHH
Confidence 000111111 1136899999995432 2344568888884 4555555543322222
Q ss_pred -HHHHHhhCCCCCcEEEeecccccCC
Q 005389 205 -LQIAGIADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 -l~l~~~~dp~g~rti~VlTK~D~~~ 229 (699)
+..++.....+.++++|+||+|+.+
T Consensus 107 ~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 107 WLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp HHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred HHHHHHHhCCCCCeEEEEEECccccc
Confidence 3334444455789999999999975
No 124
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.99 E-value=2.3e-09 Score=104.10 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
...+|+|+|..++|||||+|.|++..|
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345799999999999999999998875
No 125
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.98 E-value=5.1e-10 Score=121.13 Aligned_cols=122 Identities=18% Similarity=0.172 Sum_probs=77.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
..++|++||.+|+|||||+|+|+|........-.||+.|+.-.+.. +
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~-------------~-------------------- 117 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY-------------K-------------------- 117 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE-------------T--------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEe-------------C--------------------
Confidence 3578999999999999999999998754444456777774332210 0
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
...++|+||||+...+... ...-..+...+++++ +|++|+++.......+.+
T Consensus 118 ---------------------~~~i~l~D~pGl~~~a~~~------~~~g~~~l~~i~~ad-~il~vvD~~~p~~~~~~i 169 (376)
T 4a9a_A 118 ---------------------GAKIQMLDLPGIIDGAKDG------RGRGKQVIAVARTCN-LLFIILDVNKPLHHKQII 169 (376)
T ss_dssp ---------------------TEEEEEEECGGGCCC-----------CHHHHHHHHHHHCS-EEEEEEETTSHHHHHHHH
T ss_pred ---------------------CcEEEEEeCCCccCCchhh------hHHHHHHHHHHHhcC-ccccccccCccHHHHHHH
Confidence 1258999999998653221 122233456778887 777888887654433322
Q ss_pred -HHHHhhCC--CCCcEEEeecccccC
Q 005389 206 -QIAGIADP--DGYRTIGIITKLDIM 228 (699)
Q Consensus 206 -~l~~~~dp--~g~rti~VlTK~D~~ 228 (699)
.-+..++. ...+.++|+||.|.-
T Consensus 170 ~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 170 EKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHhhHhhccCChhhhhhHhhhh
Confidence 11222221 246788999999974
No 126
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.98 E-value=6.7e-10 Score=107.09 Aligned_cols=113 Identities=14% Similarity=0.113 Sum_probs=68.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+- .. ..+..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~------------~~t~~-------------------------------- 54 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEVV--HT------------SPTIG-------------------------------- 54 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSCE--EE------------ECCSS--------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC--cc------------CCcCc--------------------------------
Confidence 457999999999999999999998751 00 00000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
+. ...+.+. ...+.||||||..+ ++.+...|+++++++ ++|.+++....-.....
T Consensus 55 ------~~--~~~~~~~---~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~i-i~v~D~~~~~s~~~~~~ 109 (181)
T 2h17_A 55 ------SN--VEEIVIN---NTRFLMWDIGGQES-------------LRSSWNTYYTNTEFV-IVVVDSTDRERISVTRE 109 (181)
T ss_dssp ------SS--CEEEEET---TEEEEEEEESSSGG-------------GTCGGGGGGTTCCEE-EEEEETTCTTTHHHHHH
T ss_pred ------ee--eEEEEEC---CEEEEEEECCCCHh-------------HHHHHHHHhccCCEE-EEEEECCCHHHHHHHHH
Confidence 00 0011111 14699999999642 233456788999854 45555554322222222
Q ss_pred HHHhh-C---CCCCcEEEeecccccCCC
Q 005389 207 IAGIA-D---PDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 207 l~~~~-d---p~g~rti~VlTK~D~~~~ 230 (699)
....+ . ..+.++++|+||+|+.+.
T Consensus 110 ~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 110 ELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp HHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 22222 2 357899999999999753
No 127
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.98 E-value=2.8e-10 Score=110.35 Aligned_cols=114 Identities=19% Similarity=0.123 Sum_probs=67.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+|+|..++|||||+|+|++..+.+. . +|...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~-~t~~~----------------------------------------- 56 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTT--V-PTVGV----------------------------------------- 56 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEE--C-SSTTC-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCc--C-CCCce-----------------------------------------
Confidence 356899999999999999999988765211 0 01000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
. ...+.+. ...+.||||||..+.. .+...|+++++++| +|.+++....-....
T Consensus 57 --------~--~~~~~~~---~~~~~~~Dt~G~~~~~-------------~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~ 109 (189)
T 2x77_A 57 --------N--LETLQYK---NISFEVWDLGGQTGVR-------------PYWRCYFSDTDAVI-YVVDSTDRDRMGVAK 109 (189)
T ss_dssp --------C--EEEEEET---TEEEEEEEECCSSSSC-------------CCCSSSSTTCCEEE-EEEETTCCTTHHHHH
T ss_pred --------E--EEEEEEC---CEEEEEEECCCCHhHH-------------HHHHHHhhcCCEEE-EEEeCCCHHHHHHHH
Confidence 0 0011111 2368999999975432 12335778888555 555555432222222
Q ss_pred HHH----HhhCCCCCcEEEeecccccCCC
Q 005389 206 QIA----GIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 206 ~l~----~~~dp~g~rti~VlTK~D~~~~ 230 (699)
... +.....+.++++|+||+|+.+.
T Consensus 110 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 110 HELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp HHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 222 2222347899999999999754
No 128
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.97 E-value=9.7e-10 Score=108.03 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=68.8
Q ss_pred HHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhH
Q 005389 35 IFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSE 114 (699)
Q Consensus 35 ~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~ 114 (699)
+++.++. .....+|+|+|..|+|||||+++|++..+-.. .+|..+ .
T Consensus 15 ~l~~~~~--~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~---~~t~~~------------~----------------- 60 (198)
T 1f6b_A 15 VLQFLGL--YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH---VPTLHP------------T----------------- 60 (198)
T ss_dssp HHHHHTC--TTCCEEEEEEEETTSSHHHHHHHHSCC---------CCCCC------------S-----------------
T ss_pred HHHHhhc--cCCCcEEEEECCCCCCHHHHHHHHhcCCCCcc---CCCCCc------------e-----------------
Confidence 3444443 24456899999999999999999998764110 011000 0
Q ss_pred HHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEec
Q 005389 115 IRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTP 194 (699)
Q Consensus 115 i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~ 194 (699)
...+.+.+ ..+.+|||||.. ..+.+...|++.++++|++ .+
T Consensus 61 ----------------------~~~~~~~~---~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v-~D 101 (198)
T 1f6b_A 61 ----------------------SEELTIAG---MTFTTFDLGGHI-------------QARRVWKNYLPAINGIVFL-VD 101 (198)
T ss_dssp ----------------------CEEEEETT---EEEEEEEECC-----------------CCGGGGGGGGCSEEEEE-EE
T ss_pred ----------------------eEEEEECC---EEEEEEECCCcH-------------hhHHHHHHHHhcCCEEEEE-EE
Confidence 00112211 368999999953 2334556788889855554 45
Q ss_pred CCCcccchHHHHHHHhh----CCCCCcEEEeecccccCC
Q 005389 195 ANSDLANSDALQIAGIA----DPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 195 a~~d~~~~~~l~l~~~~----dp~g~rti~VlTK~D~~~ 229 (699)
+.....-.........+ ...+.++++|+||+|+.+
T Consensus 102 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 102 CADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 54332222222222222 235789999999999975
No 129
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.96 E-value=3.5e-10 Score=108.45 Aligned_cols=67 Identities=19% Similarity=0.167 Sum_probs=40.8
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch----HHHHHHHhhCCCCCcEEEeecc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS----DALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~----~~l~l~~~~dp~g~rti~VlTK 224 (699)
.+.||||||.... +.+...|+++++++|+ |.++.....-. .++..++...+ +.++++|+||
T Consensus 57 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK 121 (182)
T 3bwd_D 57 NLGLWDTAGQEDY-------------NRLRPLSYRGADVFIL-AFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTK 121 (182)
T ss_dssp -CEEECCCC-CTT-------------TTTGGGGGTTCSEEEE-EEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEEC
T ss_pred EEEEEECCCChhh-------------hhhHHhhccCCCEEEE-EEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEec
Confidence 5889999995422 2344568888885555 45554322211 12333444433 6899999999
Q ss_pred cccCCC
Q 005389 225 LDIMDR 230 (699)
Q Consensus 225 ~D~~~~ 230 (699)
+|+.+.
T Consensus 122 ~Dl~~~ 127 (182)
T 3bwd_D 122 LDLRDD 127 (182)
T ss_dssp HHHHTC
T ss_pred hhhhcC
Confidence 999764
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.96 E-value=7.3e-10 Score=122.03 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=69.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCc-cccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
..+.|+|+|..++|||||+|+|++..+.+.+... +|.-+
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~---------------------------------------- 72 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDP---------------------------------------- 72 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCC----------------------------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeee----------------------------------------
Confidence 4678999999999999999999998763332211 11111
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (699)
....+.......+.||||||+.+...-.+ . . .+.+..|+..++ ++|+|+++......
T Consensus 73 -------------~~~~~~~~~~~~l~liDTpG~~d~~~l~~-~----~-~~~~~~~l~~aD-~vllVvD~~~~~~~--- 129 (423)
T 3qq5_A 73 -------------VYKSMELHPIGPVTLVDTPGLDDVGELGR-L----R-VEKARRVFYRAD-CGILVTDSAPTPYE--- 129 (423)
T ss_dssp -------------CEEEEEETTTEEEEEEECSSTTCCCTTCC-C----C-HHHHHHHHTSCS-EEEEECSSSCCHHH---
T ss_pred -------------EEEEEEECCCCeEEEEECcCCCcccchhH-H----H-HHHHHHHHhcCC-EEEEEEeCCChHHH---
Confidence 01111111112689999999975432111 0 1 122456888888 55555566322222
Q ss_pred HHHHHhhCCCCCcEEEeecccccCCCc
Q 005389 205 LQIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 205 l~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
..+...+...+.++++|+||+|+.+..
T Consensus 130 ~~~l~~l~~~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 130 DDVVNLFKEMEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp HHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred HHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence 334444444478999999999998654
No 131
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.95 E-value=6.2e-10 Score=110.07 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=68.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+++|++..+ +....+++......
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~--------------------------------------- 48 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSA--------------------------------------- 48 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEE---------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEE---------------------------------------
Confidence 45799999999999999999998765 22222111111000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch----
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---- 202 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---- 202 (699)
.+.+. .....+.||||||.... +.+...|+++++.+|++ .+......-.
T Consensus 49 ------------~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv-~d~~~~~s~~~~~~ 101 (212)
T 2j0v_A 49 ------------NVAVD-GQIVNLGLWDTAGQEDY-------------SRLRPLSYRGADIFVLA-FSLISKASYENVLK 101 (212)
T ss_dssp ------------EEECS-SCEEEEEEECCCCCCCC-------------CC--CGGGTTCSEEEEE-EETTCHHHHHHHHH
T ss_pred ------------EEEEC-CEEEEEEEEECCCcHHH-------------HHHHHhhccCCCEEEEE-EECCCHHHHHHHHH
Confidence 00111 01136899999997532 12344588899855554 4544322211
Q ss_pred HHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 203 DALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 203 ~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.++..++...+ +.++++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 102 KWMPELRRFAP-NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp THHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHhCC-CCCEEEEEeCHHhhhC
Confidence 22333444433 6899999999999754
No 132
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.95 E-value=1.9e-09 Score=108.17 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=45.6
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-c-cchHHHHHHHhhCCCCCcEEEeeccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-L-ANSDALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~-~~~~~l~l~~~~dp~g~rti~VlTK~ 225 (699)
..+.||||+|-. .++.+...|++.++++|++....+.. + .-..++..++...+...++|+|.||+
T Consensus 62 v~l~iwDtaGqe-------------~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~ 128 (216)
T 4dkx_A 62 IRLQLWDTAGLE-------------RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128 (216)
T ss_dssp EEEEEECCSCTT-------------TCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECT
T ss_pred EEEEEEECCCch-------------hhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeecc
Confidence 368999999943 34566778999999666665433321 1 11233444444445568999999999
Q ss_pred ccCCC
Q 005389 226 DIMDR 230 (699)
Q Consensus 226 D~~~~ 230 (699)
|+.+.
T Consensus 129 Dl~~~ 133 (216)
T 4dkx_A 129 DLADK 133 (216)
T ss_dssp TCGGG
T ss_pred chHhc
Confidence 98753
No 133
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.94 E-value=5.4e-09 Score=118.86 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=76.9
Q ss_pred chHHHHHHHHHHHHH--hCCC-CCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccce
Q 005389 24 SVIPLVNKLQDIFAQ--LGSQ-STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGE 100 (699)
Q Consensus 24 ~l~~~~~~L~d~~~~--lg~~-~~~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~ 100 (699)
.+-.+.+-+.++... -|.. ......+|++||.+|+|||||+|+|+|..+- ....+++.........++. +.
T Consensus 15 g~~~i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~-~~~~~t~g~~~~~~~~~~~-----~~ 88 (535)
T 3dpu_A 15 GKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFD-PKESQTHGLNVVTKQAPNI-----KG 88 (535)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGS-----GG
T ss_pred CHHHHHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEeccccc-----cc
Confidence 344444544444331 2222 2345568999999999999999999998752 2111111111110000000 00
Q ss_pred eecCCCccccChhHHHHHHHHHhhhhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHH
Q 005389 101 FLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMS 180 (699)
Q Consensus 101 ~~~~~g~~~~d~~~i~~~i~~~t~~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~ 180 (699)
. ... + ......+.++||||.... ..+...
T Consensus 89 v-~~~----------------------~---------------~~~~~~~~i~Dt~G~e~~-------------~~~~~~ 117 (535)
T 3dpu_A 89 L-END----------------------D---------------ELKECLFHFWDFGGQEIM-------------HASHQF 117 (535)
T ss_dssp G-TTC----------------------S---------------TTTTCEEEEECCCSCCTT-------------TTTCHH
T ss_pred e-eec----------------------C---------------CCceEEEEEEECCcHHHH-------------HHHHHH
Confidence 0 000 0 001136899999994322 123335
Q ss_pred HhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 181 YIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 181 yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
|+++++ ++++|+++........++..++...+ +.++|+|+||+|+.+.
T Consensus 118 ~l~~~d-~ii~V~D~s~~~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~ 165 (535)
T 3dpu_A 118 FMTRSS-VYMLLLDSRTDSNKHYWLRHIEKYGG-KSPVIVVMNKIDENPS 165 (535)
T ss_dssp HHHSSE-EEEEEECGGGGGGHHHHHHHHHHHSS-SCCEEEEECCTTTCTT
T ss_pred HccCCc-EEEEEEeCCCchhHHHHHHHHHHhCC-CCCEEEEEECCCcccc
Confidence 777787 56666666554333334445555544 5899999999999754
No 134
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.94 E-value=3.1e-09 Score=102.68 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=70.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
-..++|+|+|..++|||||+++|++..+... .| +..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-------~~-------t~g------------------------------ 49 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-------TP-------TQG------------------------------ 49 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-------EE-------ETT------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcc-------cC-------cCC------------------------------
Confidence 3467899999999999999999998754100 00 000
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (699)
+. ...+.+. ...+.++||||.. .++.+...|+..++++|++ .++.....-.+.
T Consensus 50 --------~~--~~~~~~~---~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~~~~i~v-~d~~~~~s~~~~ 102 (181)
T 1fzq_A 50 --------FN--IKSVQSQ---GFKLNVWDIGGQR-------------KIRPYWRSYFENTDILIYV-IDSADRKRFEET 102 (181)
T ss_dssp --------EE--EEEEEET---TEEEEEEECSSCG-------------GGHHHHHHHHTTCSEEEEE-EETTCGGGHHHH
T ss_pred --------eE--EEEEEEC---CEEEEEEECCCCH-------------HHHHHHHHHhCCCCEEEEE-EECcCHHHHHHH
Confidence 00 0011111 2368999999953 3345667899999855554 454433222222
Q ss_pred HHHHHhh----CCCCCcEEEeecccccCCC
Q 005389 205 LQIAGIA----DPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 205 l~l~~~~----dp~g~rti~VlTK~D~~~~ 230 (699)
......+ ...+.++++|+||+|+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 103 GQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp HHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 2222222 2346899999999999754
No 135
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.93 E-value=8.2e-10 Score=110.02 Aligned_cols=117 Identities=14% Similarity=0.073 Sum_probs=70.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+|+|..++|||||+++|++..+. ....+++......
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~-------------------------------------- 66 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTA-------------------------------------- 66 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEE--------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEE--------------------------------------
Confidence 4568999999999999999999988763 2211111110000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc----
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---- 201 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---- 201 (699)
.+.+.+ ....+.||||||... ++.+...|+++++++|+++ +++....-
T Consensus 67 -------------~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~ 118 (214)
T 3q3j_B 67 -------------CLETEE-QRVELSLWDTSGSPY-------------YDNVRPLCYSDSDAVLLCF-DISRPETVDSAL 118 (214)
T ss_dssp -------------EEEC---CEEEEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEEE-ETTCTHHHHHHH
T ss_pred -------------EEEECC-EEEEEEEEECCCCHh-------------HHHHHHHHcCCCeEEEEEE-ECcCHHHHHHHH
Confidence 001111 113589999999532 2344556889998555554 44433221
Q ss_pred hHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 202 SDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 202 ~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
..++..++...+ +.++++|.||+|+.+.
T Consensus 119 ~~~~~~i~~~~~-~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 119 KKWRTEILDYCP-STRVLLIGCKTDLRTD 146 (214)
T ss_dssp THHHHHHHHHCT-TSEEEEEEECGGGGGC
T ss_pred HHHHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 223444444443 6899999999999864
No 136
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.93 E-value=1.6e-09 Score=104.74 Aligned_cols=26 Identities=27% Similarity=0.476 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
..+|+|+|..++|||||+|+|++..+
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35799999999999999999998875
No 137
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.93 E-value=1.1e-09 Score=106.47 Aligned_cols=25 Identities=24% Similarity=0.545 Sum_probs=23.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
.+|+|+|..++|||||+|+|++..+
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~ 46 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRF 46 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCC
Confidence 4799999999999999999998875
No 138
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.92 E-value=2.4e-09 Score=106.09 Aligned_cols=26 Identities=27% Similarity=0.476 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
..+|+|+|..++|||||+|+|++..+
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35799999999999999999999876
No 139
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.92 E-value=3.1e-09 Score=105.41 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
-..+.|+|+|..++|||||+++|++..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999999875
No 140
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.92 E-value=2e-09 Score=104.91 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=67.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhh
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (699)
....+|+|+|..++|||||+++|++..+-.. .+|..+..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~---~~t~~~~~-------------------------------------- 59 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL---QPTWHPTS-------------------------------------- 59 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCC---CCCCSCEE--------------------------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcc---ccCCCCCe--------------------------------------
Confidence 3446899999999999999999998765211 11111100
Q ss_pred hhcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH
Q 005389 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (699)
Q Consensus 125 ~~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (699)
..+.+.+ ..+.++||||.... +.+...|+++++++|+ |.+++....-...
T Consensus 60 -------------~~~~~~~---~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~ 109 (190)
T 1m2o_B 60 -------------EELAIGN---IKFTTFDLGGHIQA-------------RRLWKDYFPEVNGIVF-LVDAADPERFDEA 109 (190)
T ss_dssp -------------EEEEETT---EEEEEEECCCSGGG-------------TTSGGGGCTTCCEEEE-EEETTCGGGHHHH
T ss_pred -------------EEEEECC---EEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEE-EEECCChHHHHHH
Confidence 0111111 36899999996432 2344568888885554 5555543222222
Q ss_pred HHHHHh----hCCCCCcEEEeecccccCC
Q 005389 205 LQIAGI----ADPDGYRTIGIITKLDIMD 229 (699)
Q Consensus 205 l~l~~~----~dp~g~rti~VlTK~D~~~ 229 (699)
...... ....+.++++|+||+|+.+
T Consensus 110 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 110 RVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp HHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 222222 2235789999999999975
No 141
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.91 E-value=3e-09 Score=113.55 Aligned_cols=111 Identities=19% Similarity=0.237 Sum_probs=65.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhcC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~~ 128 (699)
+|+|+|..++|||||+++|++..+... .+|..... .
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~~~~---~pT~~~~~------------~----------------------------- 202 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNV------------E----------------------------- 202 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCCEEE---EEETTEEE------------E-----------------------------
T ss_pred eEEEECCCCccHHHHHHHHhCCCCCCc---ccccceEE------------E-----------------------------
Confidence 799999999999999999998875211 01111100 0
Q ss_pred CCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH---
Q 005389 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL--- 205 (699)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l--- 205 (699)
.+. .. ...++||||||- +.++.+...|++.++.+ ++|.+++....-....
T Consensus 203 ----------~~~--~~-~~~l~i~Dt~G~-------------~~~~~~~~~~~~~ad~v-ilV~D~~~~~s~~~~~~~~ 255 (329)
T 3o47_A 203 ----------TVE--YK-NISFTVWDVGGQ-------------DKIRPLWRHYFQNTQGL-IFVVDSNDRERVNEAREEL 255 (329)
T ss_dssp ----------EEE--ET-TEEEEEEECC------------------CCSHHHHHTTEEEE-EEEEETTCSSSHHHHHHHH
T ss_pred ----------EEe--cC-cEEEEEEECCCC-------------HhHHHHHHHHhccCCEE-EEEEECCchHHHHHHHHHH
Confidence 011 11 136899999993 23445667789998854 4555554322222221
Q ss_pred -HHHHhhCCCCCcEEEeecccccCCC
Q 005389 206 -QIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 206 -~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+.+.....+.++|+|+||+|+.+.
T Consensus 256 ~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 256 MRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHhhhccCCCeEEEEEECccCCcc
Confidence 2222222237899999999999754
No 142
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.91 E-value=4.6e-09 Score=103.00 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
...+|+|||..++|||||+++|+|..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998764
No 143
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.91 E-value=3.6e-09 Score=103.45 Aligned_cols=119 Identities=19% Similarity=0.229 Sum_probs=69.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+|+|..++|||||++.|+|. +.+. . |..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~-~---~~~------------------------------------------ 51 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK-MSPN-E---TLF------------------------------------------ 51 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC-CCGG-G---GGG------------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc-CCCc-c---eee------------------------------------------
Confidence 4678999999999999999999986 3222 1 000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHH---HHHhcCCCeeEEEEecCCCcccc-
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMI---MSYIKQPSCLILAVTPANSDLAN- 201 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv---~~yi~~~~~iIL~V~~a~~d~~~- 201 (699)
..+....+...+.......+.||||||..+- ..+. ..|+++++++|+ |.+++.....
T Consensus 52 -----~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~~~~i~-v~d~~~~~~~~ 112 (196)
T 3llu_A 52 -----LESTNKIYKDDISNSSFVNFQIWDFPGQMDF-------------FDPTFDYEMIFRGTGALIY-VIDAQDDYMEA 112 (196)
T ss_dssp -----CCCCCSCEEEEECCTTSCCEEEEECCSSCCT-------------TCTTCCHHHHHHTCSEEEE-EEETTSCCHHH
T ss_pred -----eccccceeeeeccCCCeeEEEEEECCCCHHH-------------HhhhhhcccccccCCEEEE-EEECCCchHHH
Confidence 0001111122222222347999999996432 1122 468888985555 4555543211
Q ss_pred -hHHHHHHHhh--CCCCCcEEEeecccccCCC
Q 005389 202 -SDALQIAGIA--DPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 202 -~~~l~l~~~~--dp~g~rti~VlTK~D~~~~ 230 (699)
.....++..+ ...+.++++|.||+|+.+.
T Consensus 113 ~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 113 LTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 1222333333 2347899999999999864
No 144
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.88 E-value=1.8e-09 Score=121.48 Aligned_cols=113 Identities=17% Similarity=0.120 Sum_probs=69.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|||.+|+|||||+|+|++..+.. ..+|.......
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~~~---~~~T~~~~~~~-------------------------------------- 360 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVET-------------------------------------- 360 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCC---CCCCSSEEEEE--------------------------------------
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCC---cCCccceeEEE--------------------------------------
Confidence 3579999999999999999999887421 11232221110
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
+... ...+.||||||.. .++.+...|+++++ ++|+|.++.....-.+...
T Consensus 361 ---------------~~~~-~~~~~l~Dt~G~~-------------~~~~~~~~~~~~ad-~~i~V~D~~~~~s~~~~~~ 410 (497)
T 3lvq_E 361 ---------------VTYK-NVKFNVWDVGGQD-------------KIRPLWRHYYTGTQ-GLIFVVDCADRDRIDEARQ 410 (497)
T ss_dssp ---------------EESS-SCEEEEEEECCCG-------------GGSGGGGGGGTTCC-EEEEEEETTCGGGHHHHHH
T ss_pred ---------------EEeC-CEEEEEEECCCcH-------------HHHHHHHHHhccCC-EEEEEEECcchhHHHHHHH
Confidence 0111 1368999999953 23344667999998 5555556554332222222
Q ss_pred HHHh----hCCCCCcEEEeecccccCCC
Q 005389 207 IAGI----ADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 207 l~~~----~dp~g~rti~VlTK~D~~~~ 230 (699)
.... ....+.++|+|+||+|+.+.
T Consensus 411 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 411 ELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp HHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred HHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 2222 22247899999999999753
No 145
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.87 E-value=7e-11 Score=115.95 Aligned_cols=118 Identities=15% Similarity=0.175 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
..+|+|+|..++|||||+|+|++..+........|....
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 71 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFK----------------------------------------- 71 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEE-----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEE-----------------------------------------
Confidence 468999999999999999999988753221111110000
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH---
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (699)
...+.+.+ ....+.||||||.... +.+...|+++++ ++++|.++.....-..
T Consensus 72 ----------~~~~~~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~ 126 (199)
T 3l0i_B 72 ----------IRTIELDG-KTIKLQIWDTAGQERF-------------RTITSSYYRGAH-GIIVVYDVTDQESFNNVKQ 126 (199)
T ss_dssp ----------EEEEEETT-EEEEEEEECCTTCTTC-------------CCCSCC--CCCS-EEEECC-CCCSHHHHHHHH
T ss_pred ----------EEEEEECC-EEEEEEEEECCCcHhH-------------HHHHHHHhhcCC-EEEEEEECCCHHHHHHHHH
Confidence 00111111 0136899999995432 122335788888 4555555554322222
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
++..+......+.++++|+||+|+.+.
T Consensus 127 ~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 127 WLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp HHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred HHHHHHHhccCCCCEEEEEECccCCcc
Confidence 233344444557899999999999753
No 146
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.87 E-value=6.6e-09 Score=113.95 Aligned_cols=66 Identities=20% Similarity=0.298 Sum_probs=43.1
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc---hHHHHHHHhhCCCCCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~~l~l~~~~dp~g~rti~VlTK~ 225 (699)
.++||||||.. .+......++..+|. +++|++++..... .+.+.+++.+.. .++++|+||+
T Consensus 76 ~~~iiDtPGh~-------------~~~~~~~~~~~~~D~-~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviNK~ 139 (403)
T 3sjy_A 76 RISFIDAPGHE-------------VLMATMLSGAALMDG-AILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNKV 139 (403)
T ss_dssp EEEEEECCCCG-------------GGHHHHHHHHTTCSE-EEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEECG
T ss_pred eEEEEECCCcH-------------HHHHHHHHHHhhCCE-EEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEECc
Confidence 68999999942 334455678888984 4555566654422 233444444432 5899999999
Q ss_pred ccCCC
Q 005389 226 DIMDR 230 (699)
Q Consensus 226 D~~~~ 230 (699)
|+.+.
T Consensus 140 Dl~~~ 144 (403)
T 3sjy_A 140 DVVSK 144 (403)
T ss_dssp GGSCH
T ss_pred cccch
Confidence 99864
No 147
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.82 E-value=8e-10 Score=110.20 Aligned_cols=67 Identities=19% Similarity=0.167 Sum_probs=41.1
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch---HHHHHHHhhCCCCCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~dp~g~rti~VlTK~ 225 (699)
.+.||||||.... ..+...|+++++.+| +|.+++....-. .++..+.... .+.++++|+||+
T Consensus 65 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~ 129 (221)
T 3gj0_A 65 KFNVWDTAGQEKF-------------GGLRDGYYIQAQCAI-IMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKV 129 (221)
T ss_dssp EEEEEEECSGGGT-------------SCCCHHHHTTCCEEE-EEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECT
T ss_pred EEEEEeCCChHHH-------------hHHHHHHHhcCCEEE-EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECC
Confidence 6899999995322 234456888888555 455555432211 2223333332 268999999999
Q ss_pred ccCCC
Q 005389 226 DIMDR 230 (699)
Q Consensus 226 D~~~~ 230 (699)
|+.+.
T Consensus 130 Dl~~~ 134 (221)
T 3gj0_A 130 DIKDR 134 (221)
T ss_dssp TSSSC
T ss_pred ccccc
Confidence 99754
No 148
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.31 E-value=4.3e-10 Score=110.60 Aligned_cols=68 Identities=16% Similarity=0.086 Sum_probs=41.6
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH-HHHHhhCCC--CCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL-QIAGIADPD--GYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l-~l~~~~dp~--g~rti~VlTK~ 225 (699)
.+.||||||.. ....+...|+++++++|++ .+++....-.+.. .+...+... +.++++|+||+
T Consensus 79 ~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~iilv-~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~ 144 (204)
T 3th5_A 79 NLGLWDTAGQE-------------DYDRLRPLSYPQTDVFLIC-FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 144 (204)
Confidence 57899999953 3345566788888855554 4444322222211 222333222 68999999999
Q ss_pred ccCCC
Q 005389 226 DIMDR 230 (699)
Q Consensus 226 D~~~~ 230 (699)
|+.+.
T Consensus 145 Dl~~~ 149 (204)
T 3th5_A 145 DLRDD 149 (204)
Confidence 99864
No 149
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.82 E-value=7.9e-09 Score=115.92 Aligned_cols=65 Identities=29% Similarity=0.268 Sum_probs=43.8
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch--HHHHHHHhhCCCCCcEEEeeccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~~~~dp~g~rti~VlTK~ 225 (699)
..++||||||. +.+......++..+| ++++|++++.....+ +.+.+++. .+.+.|+|+||+
T Consensus 73 ~~i~iiDtPGh-------------~~~~~~~~~~~~~aD-~~ilVvda~~g~~~qt~e~l~~~~~---~~ip~IvviNK~ 135 (482)
T 1wb1_A 73 YRITLVDAPGH-------------ADLIRAVVSAADIID-LALIVVDAKEGPKTQTGEHMLILDH---FNIPIIVVITKS 135 (482)
T ss_dssp EEEEECCCSSH-------------HHHHHHHHHHTTSCC-EEEEEEETTTCSCHHHHHHHHHHHH---TTCCBCEEEECT
T ss_pred EEEEEEECCCh-------------HHHHHHHHHHHhhCC-EEEEEEecCCCccHHHHHHHHHHHH---cCCCEEEEEECC
Confidence 36999999993 234455667888898 555555666544332 22344443 467889999999
Q ss_pred ccCC
Q 005389 226 DIMD 229 (699)
Q Consensus 226 D~~~ 229 (699)
|+.+
T Consensus 136 Dl~~ 139 (482)
T 1wb1_A 136 DNAG 139 (482)
T ss_dssp TSSC
T ss_pred Cccc
Confidence 9986
No 150
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.80 E-value=3.5e-09 Score=119.96 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=48.4
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
..++||||||..+- ...+..|++.++++ |+|+++......+. ..+.+.+...+.++++|+||+|+
T Consensus 82 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~a-llVvDa~~g~~~~t-~~~~~~~~~~~iPiivviNK~Dl 146 (528)
T 3tr5_A 82 YLINLLDTPGHADF-------------TEDTYRTLTAVDSA-LMVIDAAKGVEPRT-IKLMEVCRLRHTPIMTFINKMDR 146 (528)
T ss_dssp EEEEEECCCCSTTC-------------CHHHHHGGGGCSEE-EEEEETTTCSCHHH-HHHHHHHHTTTCCEEEEEECTTS
T ss_pred EEEEEEECCCchhH-------------HHHHHHHHHhCCEE-EEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEeCCCC
Confidence 46999999997543 23466889999854 55556665544433 55666666678999999999999
Q ss_pred CCC
Q 005389 228 MDR 230 (699)
Q Consensus 228 ~~~ 230 (699)
...
T Consensus 147 ~~~ 149 (528)
T 3tr5_A 147 DTR 149 (528)
T ss_dssp CCS
T ss_pred ccc
Confidence 653
No 151
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.80 E-value=1.4e-08 Score=107.13 Aligned_cols=118 Identities=18% Similarity=0.119 Sum_probs=70.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+|+|..++|||||++.+++..+. .....+|.......
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~------------------------------------- 195 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSAN------------------------------------- 195 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC-CSCCCCSEEEEEEE-------------------------------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC-cccCCcccceeEEE-------------------------------------
Confidence 4578999999999999999999987652 22222222111000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchH--
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD-- 203 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~-- 203 (699)
+.+.+ ....+.||||||.... ..+...|++.++++| +|.+++....-.+
T Consensus 196 --------------~~~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 246 (332)
T 2wkq_A 196 --------------VMVDG-KPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFL-ICFSLVSPASFHHVR 246 (332)
T ss_dssp --------------EEETT-EEEEEEEEEECCCGGG-------------TTTGGGGCTTCSEEE-EEEETTCHHHHHHHH
T ss_pred --------------EEECC-EEEEEEEEeCCCchhh-------------hHHHHHhccCCCEEE-EEEeCCCHHHHHHHH
Confidence 00000 0125779999996432 234456888888555 4555544322222
Q ss_pred --HHHHHHhhCCCCCcEEEeecccccCCCc
Q 005389 204 --ALQIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 204 --~l~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
.+..++...+ +.++++|+||+|+.+..
T Consensus 247 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~ 275 (332)
T 2wkq_A 247 AKWYPEVRHHCP-NTPIILVGTKLDLRDDK 275 (332)
T ss_dssp HTHHHHHHHHCT-TSCEEEEEECHHHHTCH
T ss_pred HHHHHHHHhhCC-CCcEEEEEEchhccccc
Confidence 2233444443 78999999999997643
No 152
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.79 E-value=1.2e-08 Score=107.84 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=43.9
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHH---HHHHHhhC--CCCCcEEEee
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIAD--PDGYRTIGII 222 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l~l~~~~d--p~g~rti~Vl 222 (699)
..+.||||||..+ -.+.....+...|+++++++ ++|.++.....-.+. ...+..+. ..+.++++|+
T Consensus 52 ~~l~i~Dt~G~~~--------~~~~~~~~~~~~~~~~ad~v-i~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~ 122 (307)
T 3r7w_A 52 MTLNLWDCGGQDV--------FMENYFTKQKDHIFQMVQVL-IHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122 (307)
T ss_dssp EEEEEEEECCSHH--------HHHHHHTTTHHHHHTTCSEE-EEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEEEECCCcHH--------HhhhhhhhHHHHHhccCCEE-EEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4699999999431 11222256677888999854 555555543222221 12222221 2368999999
Q ss_pred cccccCC
Q 005389 223 TKLDIMD 229 (699)
Q Consensus 223 TK~D~~~ 229 (699)
||+|+.+
T Consensus 123 NK~Dl~~ 129 (307)
T 3r7w_A 123 HKMDLVQ 129 (307)
T ss_dssp ECGGGSC
T ss_pred ecccccc
Confidence 9999986
No 153
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.79 E-value=7.4e-08 Score=96.10 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
...+|+|||.+|+|||||+|.++|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34689999999999999999999864
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.78 E-value=3.2e-08 Score=111.11 Aligned_cols=146 Identities=18% Similarity=0.218 Sum_probs=73.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+++|..++|||||+|+|++....-......|-.. . ... .|+...++..+.+....
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~-------~--~~~-------~g~~~~~~~~~~d~~~~---- 91 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQR-------E--SET-------MGKSSFKFAWIMDQTNE---- 91 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHH-------H--HHh-------cCCCcchhhhhhccchh----
Confidence 456799999999999999999987621000000000000 0 000 01111111111111111
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-------
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD------- 198 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d------- 198 (699)
....+++.+.....+..+. ..++||||||.. .+......|++.++.+| +|++++..
T Consensus 92 --e~~~GiTi~~~~~~~~~~~-~~~~iiDTPG~~-------------~f~~~~~~~~~~aD~~l-lVvDa~~g~~~~~~~ 154 (483)
T 3p26_A 92 --ERERGVTVSICTSHFSTHR-ANFTIVDAPGHR-------------DFVPNAIMGISQADMAI-LCVDCSTNAFESGFD 154 (483)
T ss_dssp -----CCSSCCCCEEEEECSS-CEEEEECCCCCG-------------GGHHHHHHHHTTCSEEE-EEEECCC------CC
T ss_pred --HhhcCcceEeeeEEEecCC-ceEEEEECCCcH-------------HHHHHHHHhhhhCCEEE-EEEECCCCccccccc
Confidence 1123455555555555544 479999999963 23455667889998554 55555543
Q ss_pred ccch--HHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 199 LANS--DALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 199 ~~~~--~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+..+ +.+.+++.+. ..++|+|+||+|+.+.
T Consensus 155 ~~~qt~e~~~~~~~~~--~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 155 LDGQTKEHMLLASSLG--IHNLIIAMNKMDNVDW 186 (483)
T ss_dssp CCHHHHHHHHHHHHTT--CCCEEEEEECGGGGTT
T ss_pred hhhhHHHHHHHHHHcC--CCcEEEEEECcCcccc
Confidence 1122 2233333332 2469999999999863
No 155
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.75 E-value=1.7e-08 Score=109.16 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=41.3
Q ss_pred cceEEEeCCCCCCCCCC-CCchHHHHHHHHHHHHHhcCC-------------CeeEEEEecCCCcccchHHHHHHHhhCC
Q 005389 148 LDITLVDLPGITKVPVG-EQPADIEARIRTMIMSYIKQP-------------SCLILAVTPANSDLANSDALQIAGIADP 213 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~-~q~~di~~~i~~lv~~yi~~~-------------~~iIL~V~~a~~d~~~~~~l~l~~~~dp 213 (699)
..+++|||||+.+.... +.-..+...+.+....|+... ++++++|.++...+...+ ..+.+.+.
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d-~~~~~~l~- 172 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-VAFMKAIH- 172 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHH-HHHHHHTC-
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhH-HHHHHHhc-
Confidence 36899999998543211 000111222333333566533 335555655566666555 45667775
Q ss_pred CCCcEEEeecccccCCC
Q 005389 214 DGYRTIGIITKLDIMDR 230 (699)
Q Consensus 214 ~g~rti~VlTK~D~~~~ 230 (699)
.+.++|+|+||+|+...
T Consensus 173 ~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp S-SCEEEEEECCSSSCH
T ss_pred cCCCEEEEEECCCCCCH
Confidence 57899999999999864
No 156
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.75 E-value=2.2e-08 Score=111.10 Aligned_cols=148 Identities=18% Similarity=0.145 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+++|..++|||||+|+|++..-.-......+ +... ....|+...+++-+.+....
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~-------~~~~---------~~~~g~~~~~~a~~~d~~~~---- 75 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEK-------YERE---------AKEKNRETWYLSWALDTNQE---- 75 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHH-------HHHH---------HHhccccchhhhhhhccchh----
Confidence 356799999999999999999987632100000000 0000 00001100111111110000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc----
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---- 201 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---- 201 (699)
....+++-+.....+..+. ..++||||||.. .+......+++.+| ++|+|++++.....
T Consensus 76 --er~~GiTid~~~~~~~~~~-~~~~iiDTPGh~-------------~f~~~~~~~~~~aD-~~ilVVDa~~g~~e~~~~ 138 (439)
T 3j2k_7 76 --ERDKGKTVEVGRAYFETEK-KHFTILDAPGHK-------------SFVPNMIGGASQAD-LAVLVISARKGEFETGFE 138 (439)
T ss_pred --HhhcCceEEEeEEEEecCC-eEEEEEECCChH-------------HHHHHHHhhHhhCC-EEEEEEECCCCccccccC
Confidence 0113344444344444443 379999999942 34455567788898 45555566654320
Q ss_pred --hHHHHHHHhhCCCCCc-EEEeecccccCCC
Q 005389 202 --SDALQIAGIADPDGYR-TIGIITKLDIMDR 230 (699)
Q Consensus 202 --~~~l~l~~~~dp~g~r-ti~VlTK~D~~~~ 230 (699)
....+.+..+...+.+ +|+|+||+|+.+.
T Consensus 139 ~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 139 KGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 170 (439)
T ss_pred CCchHHHHHHHHHHcCCCeEEEEeecCCCccc
Confidence 1112333333334566 8999999999753
No 157
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.73 E-value=6.7e-09 Score=113.62 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccC-CccccceEE
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLV 86 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~-~~~Tr~p~~ 86 (699)
+|++||.+|+|||||+|+|+|... .++. -.||+.|..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~-~~~~~p~tT~~~~~ 39 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANV 39 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-cccCCCCcccCCce
Confidence 699999999999999999999873 3332 236665543
No 158
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.72 E-value=2e-09 Score=121.70 Aligned_cols=117 Identities=20% Similarity=0.263 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
..|.|+|+|..++|||||+++|++..+.....+..|... +.+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i--------------~~~------------------------ 44 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI--------------GAF------------------------ 44 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT--------------TSC------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE--------------eEE------------------------
Confidence 368899999999999999999998765322222112110 000
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
.+..+....++||||||... +..+...++..++ ++++|++++.....+. .
T Consensus 45 ---------------~v~~~~g~~i~~iDTPGhe~-------------f~~~~~~~~~~aD-~vILVVDa~dg~~~qt-~ 94 (537)
T 3izy_P 45 ---------------LVSLPSGEKITFLDTPGHAA-------------FSAMRARGTQVTD-IVILVVAADDGVMKQT-V 94 (537)
T ss_dssp ---------------CBCSSCSSCCBCEECSSSCC-------------TTTSBBSSSBSBS-SCEEECBSSSCCCHHH-H
T ss_pred ---------------EEEeCCCCEEEEEECCChHH-------------HHHHHHHHHccCC-EEEEEEECCCCccHHH-H
Confidence 00111122589999999542 2233445778888 5555566665544433 4
Q ss_pred HHHHhhCCCCCcEEEeecccccCCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
..+..+...+.++|+|+||+|+.+.
T Consensus 95 e~l~~~~~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 95 ESIQHAKDAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp HHHHHHHTTTCCEEECCBSGGGTTT
T ss_pred HHHHHHHHcCCcEEEEEeccccccc
Confidence 5555555667899999999999753
No 159
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.72 E-value=4.7e-08 Score=112.64 Aligned_cols=146 Identities=18% Similarity=0.219 Sum_probs=76.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+|||..++|||||+|+|++....-....+. .+.......|+...++..+......+..
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~----------------~~~~~~~~~g~~~~~~a~~~d~~~~e~~- 228 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLR----------------KLQRESETMGKSSFKFAWIMDQTNEERE- 228 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHH----------------HHHHHSSCSSSSCCSSSHHHHHHHHHHH-
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHH----------------HHHhhhhhccccccceeeeeccchhhhh-
Confidence 46689999999999999999999874210000000 0000000011111222222222222111
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-------
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD------- 198 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d------- 198 (699)
.|++.+.....+..+. ..++||||||.. .+......+++.++ ++|+|++++..
T Consensus 229 -----~GiTid~~~~~~~~~~-~~~~iiDTPG~e-------------~f~~~~~~~~~~aD-~~llVVDa~~g~~e~~~~ 288 (611)
T 3izq_1 229 -----RGVTVSICTSHFSTHR-ANFTIVDAPGHR-------------DFVPNAIMGISQAD-MAILCVDCSTNAFESGFD 288 (611)
T ss_dssp -----TTTCCSCSCCEEECSS-CEEEEEECCSSS-------------CHHHHHTTTSSCCS-EEEEEEECSHHHHHTTCC
T ss_pred -----CCeeEeeeeEEEecCC-ceEEEEECCCCc-------------ccHHHHHHHHhhcC-ceEEEEECCCCcccccch
Confidence 1333333333344433 479999999964 23455567888998 55555566542
Q ss_pred ccchHHHHHHHhhCCCC-CcEEEeecccccCC
Q 005389 199 LANSDALQIAGIADPDG-YRTIGIITKLDIMD 229 (699)
Q Consensus 199 ~~~~~~l~l~~~~dp~g-~rti~VlTK~D~~~ 229 (699)
...+. ...+..+...+ .++|+|+||+|+.+
T Consensus 289 ~~~qt-~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 289 LDGQT-KEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp TTSHH-HHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred hhhHH-HHHHHHHHHcCCCeEEEEEecccccc
Confidence 12222 22333333334 45999999999986
No 160
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.72 E-value=2.3e-08 Score=109.69 Aligned_cols=82 Identities=22% Similarity=0.269 Sum_probs=52.4
Q ss_pred cceEEEeCCCCCCCCCCC-Cch----HHHHHHHHHHHHHhc---------C--CCeeEEEEecCCCcccchHHHHHHHhh
Q 005389 148 LDITLVDLPGITKVPVGE-QPA----DIEARIRTMIMSYIK---------Q--PSCLILAVTPANSDLANSDALQIAGIA 211 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~-q~~----di~~~i~~lv~~yi~---------~--~~~iIL~V~~a~~d~~~~~~l~l~~~~ 211 (699)
+.++++|+||+....... .-. .+..++...+..|.. . .++++++|++++.++...| +.+++.+
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L 173 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKL 173 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHT
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHH
Confidence 479999999996532110 001 123444455555532 1 1346888999988888777 7888998
Q ss_pred CCCCCcEEEeecccccCCCc
Q 005389 212 DPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 212 dp~g~rti~VlTK~D~~~~~ 231 (699)
. .+.++|+|+||+|.+.+.
T Consensus 174 ~-~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 174 D-SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp C-SCSEEEEEESCGGGSCHH
T ss_pred h-hCCCEEEEEcchhccchH
Confidence 7 689999999999999754
No 161
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.71 E-value=3.2e-08 Score=113.41 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=44.3
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
..++||||||..+ +...+..+++.++.+ ++|+++......+.. .....+...+.++|+|+||+|+
T Consensus 71 ~~l~liDTPGh~d-------------F~~ev~~~l~~aD~a-ILVVDa~~gv~~qt~-~~~~~~~~~~ipiIvViNKiDl 135 (599)
T 3cb4_D 71 YQLNFIDTPGHVD-------------FSYEVSRSLAACEGA-LLVVDAGQGVEAQTL-ANCYTAMEMDLEVVPVLNKIDL 135 (599)
T ss_dssp EEEEEEECCCCGG-------------GHHHHHHHHHHCSEE-EEEEETTTCCCTHHH-HHHHHHHHTTCEEEEEEECTTS
T ss_pred EEEEEEECCCchH-------------HHHHHHHHHHHCCEE-EEEEECCCCCCHHHH-HHHHHHHHCCCCEEEeeeccCc
Confidence 4789999999642 334566788888855 455566555444332 2222222346899999999999
Q ss_pred CCC
Q 005389 228 MDR 230 (699)
Q Consensus 228 ~~~ 230 (699)
.+.
T Consensus 136 ~~a 138 (599)
T 3cb4_D 136 PAA 138 (599)
T ss_dssp TTC
T ss_pred ccc
Confidence 754
No 162
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.70 E-value=1.1e-07 Score=104.53 Aligned_cols=67 Identities=18% Similarity=0.234 Sum_probs=42.8
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcc---cchHHHHHHHhhCCCCCcEEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL---ANSDALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~---~~~~~l~l~~~~dp~g~rti~VlTK 224 (699)
..++||||||. +.+......++..+| ++++|++++... .+.+.+.+++.+. ..++|+|+||
T Consensus 83 ~~i~iiDtPGh-------------~~f~~~~~~~~~~~D-~~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK 146 (410)
T 1kk1_A 83 RRVSFIDAPGH-------------EALMTTMLAGASLMD-GAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNK 146 (410)
T ss_dssp EEEEEEECSSH-------------HHHHHHHHHCGGGCS-EEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEEC
T ss_pred cEEEEEECCCh-------------HHHHHHHHhhhhhCC-EEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEEC
Confidence 36899999993 233445556677788 455555666543 2223344555443 2578999999
Q ss_pred cccCCC
Q 005389 225 LDIMDR 230 (699)
Q Consensus 225 ~D~~~~ 230 (699)
+|+.+.
T Consensus 147 ~Dl~~~ 152 (410)
T 1kk1_A 147 IELVDK 152 (410)
T ss_dssp GGGSCH
T ss_pred ccCCCH
Confidence 999864
No 163
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.69 E-value=5.5e-08 Score=111.38 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=44.7
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
..++||||||..+ +...+..+++.++.+|| |+++......+. ......+...+.++|+|+||+|+
T Consensus 73 ~~inliDTPGh~d-------------F~~ev~r~l~~aD~aIL-VVDa~~gv~~qt-~~~~~~a~~~~ipiIvviNKiDl 137 (600)
T 2ywe_A 73 YKLHLIDTPGHVD-------------FSYEVSRALAACEGALL-LIDASQGIEAQT-VANFWKAVEQDLVIIPVINKIDL 137 (600)
T ss_dssp EEEEEECCCCSGG-------------GHHHHHHHHHTCSEEEE-EEETTTBCCHHH-HHHHHHHHHTTCEEEEEEECTTS
T ss_pred EEEEEEECCCcHh-------------HHHHHHHHHHhCCEEEE-EEECCCCccHHH-HHHHHHHHHCCCCEEEEEeccCc
Confidence 4689999999652 23455677888985555 556665544333 22222233357899999999999
Q ss_pred CCC
Q 005389 228 MDR 230 (699)
Q Consensus 228 ~~~ 230 (699)
...
T Consensus 138 ~~a 140 (600)
T 2ywe_A 138 PSA 140 (600)
T ss_dssp TTC
T ss_pred ccc
Confidence 753
No 164
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.68 E-value=9.1e-08 Score=93.62 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
..+|+|+|+.|||||||++.|+|..+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 35799999999999999999999875
No 165
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.65 E-value=4.8e-08 Score=110.70 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=47.9
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
..+.||||||..+- ...+..|++.++++|+ |+++......+ ...+.+.+...+.++++|+||+|+
T Consensus 82 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~~Il-VvDa~~g~~~~-t~~~~~~~~~~~ipiivviNK~Dl 146 (529)
T 2h5e_A 82 CLVNLLDTPGHEDF-------------SEDTYRTLTAVDCCLM-VIDAAKGVEDR-TRKLMEVTRLRDTPILTFMNKLDR 146 (529)
T ss_dssp EEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEE-EEETTTCSCHH-HHHHHHHHTTTTCCEEEEEECTTS
T ss_pred eEEEEEECCCChhH-------------HHHHHHHHHHCCEEEE-EEeCCccchHH-HHHHHHHHHHcCCCEEEEEcCcCC
Confidence 47999999997532 2345578899985555 45555544333 255666666678999999999999
Q ss_pred CCCc
Q 005389 228 MDRG 231 (699)
Q Consensus 228 ~~~~ 231 (699)
....
T Consensus 147 ~~~~ 150 (529)
T 2h5e_A 147 DIRD 150 (529)
T ss_dssp CCSC
T ss_pred cccc
Confidence 7643
No 166
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.65 E-value=5.5e-08 Score=95.65 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=43.3
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhc---CCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK---QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~---~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~ 225 (699)
.+.++||||+...... ....+.++..+..|+. ..+ .+++|.++.......+ .++.+.+...+.+.++|.||+
T Consensus 73 ~~~l~Dt~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~nK~ 147 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVP---EEMKRKWQRALGEYLEKRQSLQ-GLVVLMDIRHPLKDLD-QQMIEWAVDSNIAVLVLLTKA 147 (210)
T ss_dssp TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEE-EEEEEEETTSCCCHHH-HHHHHHHHHTTCCEEEEEECG
T ss_pred CEEEEECcCCcccccC---HHHHHHHHHHHHHHHHhhhccc-EEEEEEECCCCCchhH-HHHHHHHHHcCCCeEEEEecc
Confidence 5889999998542111 1112344555555653 444 4555566654433222 233344444568899999999
Q ss_pred ccCCCc
Q 005389 226 DIMDRG 231 (699)
Q Consensus 226 D~~~~~ 231 (699)
|+...+
T Consensus 148 D~~s~~ 153 (210)
T 1pui_A 148 DKLASG 153 (210)
T ss_dssp GGSCHH
T ss_pred cCCCch
Confidence 998654
No 167
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.64 E-value=1.3e-07 Score=103.70 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=41.8
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcc---cchHHHHHHHhhCCCCCcEEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL---ANSDALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~---~~~~~l~l~~~~dp~g~rti~VlTK 224 (699)
..++||||||. +.+......++..+| ++++|++++... .+.+.+.+++.+. ..++|+|+||
T Consensus 81 ~~i~iiDtPGh-------------~~f~~~~~~~~~~~D-~~ilVvda~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK 144 (408)
T 1s0u_A 81 RRVSFVDSPGH-------------ETLMATMLSGASLMD-GAILVIAANEPCPQPQTKEHLMALEILG--IDKIIIVQNK 144 (408)
T ss_dssp EEEEEEECSSH-------------HHHHHHHHTTCSCCS-EEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEEC
T ss_pred cEEEEEECCCH-------------HHHHHHHHHhHhhCC-EEEEEEECCCCCCCchhHHHHHHHHHcC--CCeEEEEEEc
Confidence 36999999992 233444456667778 555556666543 1223334444432 2479999999
Q ss_pred cccCCC
Q 005389 225 LDIMDR 230 (699)
Q Consensus 225 ~D~~~~ 230 (699)
+|+.+.
T Consensus 145 ~Dl~~~ 150 (408)
T 1s0u_A 145 IDLVDE 150 (408)
T ss_dssp TTSSCT
T ss_pred cCCCCH
Confidence 999864
No 168
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.63 E-value=6.4e-08 Score=106.13 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=42.3
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCc-EEEeecccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKLD 226 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~r-ti~VlTK~D 226 (699)
..++||||||..+ +......++..+|.+||+ +++......+. .+.+..+...+.+ +++|+||+|
T Consensus 75 ~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilV-vda~~g~~~qt-~~~l~~~~~~~ip~iivviNK~D 139 (405)
T 2c78_A 75 RHYSHVDCPGHAD-------------YIKNMITGAAQMDGAILV-VSAADGPMPQT-REHILLARQVGVPYIVVFMNKVD 139 (405)
T ss_dssp CEEEEEECCCSGG-------------GHHHHHHHHTTCSSEEEE-EETTTCCCHHH-HHHHHHHHHTTCCCEEEEEECGG
T ss_pred eEEEEEECCChHH-------------HHHHHHHHHHHCCEEEEE-EECCCCCcHHH-HHHHHHHHHcCCCEEEEEEECcc
Confidence 4799999999642 234456788889855555 55554433222 2333333334567 889999999
Q ss_pred cCC
Q 005389 227 IMD 229 (699)
Q Consensus 227 ~~~ 229 (699)
+.+
T Consensus 140 l~~ 142 (405)
T 2c78_A 140 MVD 142 (405)
T ss_dssp GCC
T ss_pred ccC
Confidence 985
No 169
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.62 E-value=1.8e-07 Score=102.78 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=41.9
Q ss_pred cceEEEeCCCCCCCCCC-CCchHHHHHHHHHHHHHh-----------cCCC--eeEEEEecCCCcccchHHHHHHHhhCC
Q 005389 148 LDITLVDLPGITKVPVG-EQPADIEARIRTMIMSYI-----------KQPS--CLILAVTPANSDLANSDALQIAGIADP 213 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~-~q~~di~~~i~~lv~~yi-----------~~~~--~iIL~V~~a~~d~~~~~~l~l~~~~dp 213 (699)
+.++++|+||+...... ..-..+...+......|+ .+++ ++++++.+....+...+ ..+.+.+..
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d-~~~lk~L~~ 166 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE 166 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH-HHHHHHHTT
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH-HHHHHHHhc
Confidence 47999999998653211 111223333333444454 3333 23333333334555544 466777765
Q ss_pred CCCcEEEeecccccCCC
Q 005389 214 DGYRTIGIITKLDIMDR 230 (699)
Q Consensus 214 ~g~rti~VlTK~D~~~~ 230 (699)
+.++|+|+||+|++.+
T Consensus 167 -~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 167 -KVNIIPLIAKADTLTP 182 (418)
T ss_dssp -TSEEEEEEESTTSSCH
T ss_pred -cCcEEEEEEcccCccH
Confidence 7899999999999864
No 170
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.62 E-value=1.5e-07 Score=91.80 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
..+|+|||.+|+|||||+|.++|.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999974
No 171
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.62 E-value=1.6e-07 Score=101.84 Aligned_cols=61 Identities=13% Similarity=0.309 Sum_probs=38.5
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccc--hHHHHHHHhhCCCCCcE-EEeec-c
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN--SDALQIAGIADPDGYRT-IGIIT-K 224 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~--~~~l~l~~~~dp~g~rt-i~VlT-K 224 (699)
.++||||||..+ .+.. ...+++.++.+||+|. +..... .+.+.+++. .+.+. |+|+| |
T Consensus 61 ~i~iiDtPGh~~------------f~~~-~~~~~~~aD~ailVvd--~~g~~~qt~e~~~~~~~---~~i~~~ivvvNNK 122 (370)
T 2elf_A 61 NMVFVDAHSYPK------------TLKS-LITALNISDIAVLCIP--PQGLDAHTGECIIALDL---LGFKHGIIALTRS 122 (370)
T ss_dssp EEEEEECTTTTT------------CHHH-HHHHHHTCSEEEEEEC--TTCCCHHHHHHHHHHHH---TTCCEEEEEECCG
T ss_pred EEEEEECCChHH------------HHHH-HHHHHHHCCEEEEEEc--CCCCcHHHHHHHHHHHH---cCCCeEEEEEEec
Confidence 599999999642 2223 3456788986666654 444332 233344443 35666 99999 9
Q ss_pred ccc
Q 005389 225 LDI 227 (699)
Q Consensus 225 ~D~ 227 (699)
+|+
T Consensus 123 ~Dl 125 (370)
T 2elf_A 123 DST 125 (370)
T ss_dssp GGS
T ss_pred cCC
Confidence 999
No 172
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.61 E-value=5.4e-08 Score=94.02 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.+|+|+|+.|+|||||++.|+|.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999985
No 173
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.57 E-value=1.9e-08 Score=115.41 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=42.7
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccC
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
.++||||||..+-. .+...+++.++ ++++|++++.....+. ...++.+...+.++|+|+||+|+.
T Consensus 71 ~i~liDTPGhe~F~-------------~~~~r~~~~aD-~aILVvDa~~Gv~~qT-~e~l~~l~~~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 71 GLFFIDTPGHEAFT-------------TLRKRGGALAD-LAILIVDINEGFKPQT-QEALNILRMYRTPFVVAANKIDRI 135 (594)
T ss_dssp EEEEECCCTTSCCT-------------TSBCSSSBSCS-EEEEEEETTTCCCHHH-HHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CEEEEECCCcHHHH-------------HHHHHHHhhCC-EEEEEEECCCCccHhH-HHHHHHHHHcCCeEEEEecccccc
Confidence 59999999974331 22235677788 5555566666543332 333334444578999999999997
Q ss_pred C
Q 005389 229 D 229 (699)
Q Consensus 229 ~ 229 (699)
.
T Consensus 136 ~ 136 (594)
T 1g7s_A 136 H 136 (594)
T ss_dssp T
T ss_pred c
Confidence 5
No 174
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.57 E-value=1.9e-07 Score=103.34 Aligned_cols=148 Identities=15% Similarity=0.145 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...+|+++|..++|||||+|+|++...........+ ........+++ +. ..++..+.+....
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~-i~~~s~~~gt~------------~~-~~~~~~~~d~~~~---- 84 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEA-ITRDSKKSGTT------------GD-DVDLALLVDGLQA---- 84 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC-------------------------------CC-C--CHHHHHHHHC----
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhh-hhhhhhccCcc------------cc-chhhhhhhccChh----
Confidence 346899999999999999999987641100000000 00000000000 00 0011111111111
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch--H
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--D 203 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--~ 203 (699)
....+++-+.-...+..+. ..++||||||.. .+......|+..++ ++++|++++.....+ +
T Consensus 85 --E~~rGiTi~~~~~~~~~~~-~~~~iiDtpGh~-------------~f~~~~~~~~~~aD-~~ilVvDa~~g~~~qt~~ 147 (434)
T 1zun_B 85 --EREQGITIDVAYRYFSTAK-RKFIIADTPGHE-------------QYTRNMATGASTCD-LAIILVDARYGVQTQTRR 147 (434)
T ss_dssp -------CCCCCEEEEEECSS-EEEEEEECCCSG-------------GGHHHHHHHHTTCS-EEEEEEETTTCSCHHHHH
T ss_pred --HHHCCcEEEeeeeEeecCC-ceEEEEECCChH-------------HHHHHHHHHHhhCC-EEEEEEECCCCCcHHHHH
Confidence 1112343333333333332 469999999953 22334456788998 555555666544322 2
Q ss_pred HHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 204 ~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+.+++.+. ..++|+|+||+|+.+.
T Consensus 148 ~l~~~~~~~--~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 148 HSYIASLLG--IKHIVVAINKMDLNGF 172 (434)
T ss_dssp HHHHHHHTT--CCEEEEEEECTTTTTS
T ss_pred HHHHHHHcC--CCeEEEEEEcCcCCcc
Confidence 234444432 2368999999999863
No 175
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.56 E-value=1.4e-08 Score=109.95 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=30.3
Q ss_pred CCCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 21 ~~~~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-+..+-.+++.+.+.+. -.+|+++|.+|+|||||+|+|+|.
T Consensus 145 ~g~gi~~L~~~I~~~~~---------~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 145 KGIGMAKVMEAINRYRE---------GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTBTHHHHHHHHHHHHT---------TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhcc---------cCcEEEEcCCCCchHHHHHHHHhh
Confidence 34555556666654321 246999999999999999999987
No 176
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.56 E-value=3.6e-08 Score=115.34 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=45.9
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
..+.||||||..+- ...+..+++.+| .+|+|+++......++ ..+.+.+...+.++++|+||+|+
T Consensus 75 ~~i~liDTPG~~df-------------~~~~~~~l~~aD-~~llVvDa~~g~~~~~-~~~~~~~~~~~~p~ilviNK~Dl 139 (693)
T 2xex_A 75 HRVNIIDTPGHVDF-------------TVEVERSLRVLD-GAVTVLDAQSGVEPQT-ETVWRQATTYGVPRIVFVNKMDK 139 (693)
T ss_dssp EEEEEECCCCCSSC-------------CHHHHHHHHHCS-EEEEEEETTTBSCHHH-HHHHHHHHHTTCCEEEEEECTTS
T ss_pred eeEEEEECcCCcch-------------HHHHHHHHHHCC-EEEEEECCCCCCcHHH-HHHHHHHHHcCCCEEEEEECCCc
Confidence 47999999998643 123456778888 5555566665544333 34444444457899999999999
Q ss_pred CCC
Q 005389 228 MDR 230 (699)
Q Consensus 228 ~~~ 230 (699)
...
T Consensus 140 ~~~ 142 (693)
T 2xex_A 140 LGA 142 (693)
T ss_dssp TTC
T ss_pred ccc
Confidence 864
No 177
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.56 E-value=1.6e-07 Score=102.74 Aligned_cols=65 Identities=22% Similarity=0.203 Sum_probs=42.5
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch--HHHHHHHhhCCCCCc-EEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYR-TIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~~~~dp~g~r-ti~VlTK 224 (699)
..++||||||. +.+......++..+|.+|| |++++.....+ +.+.+++. .+.+ .++|+||
T Consensus 66 ~~~~iiDtpG~-------------~~f~~~~~~~~~~aD~~il-Vvda~~g~~~qt~e~l~~~~~---~~vp~iivviNK 128 (397)
T 1d2e_A 66 RHYAHTDCPGH-------------ADYVKNMITGTAPLDGCIL-VVAANDGPMPQTREHLLLARQ---IGVEHVVVYVNK 128 (397)
T ss_dssp CEEEEEECSSH-------------HHHHHHHHHTSSCCSEEEE-EEETTTCSCHHHHHHHHHHHH---TTCCCEEEEEEC
T ss_pred eEEEEEECCCh-------------HHHHHHHHhhHhhCCEEEE-EEECCCCCCHHHHHHHHHHHH---cCCCeEEEEEEC
Confidence 47999999993 2344556678889985554 55665543332 22333433 4567 6899999
Q ss_pred cccCC
Q 005389 225 LDIMD 229 (699)
Q Consensus 225 ~D~~~ 229 (699)
+|+.+
T Consensus 129 ~Dl~~ 133 (397)
T 1d2e_A 129 ADAVQ 133 (397)
T ss_dssp GGGCS
T ss_pred cccCC
Confidence 99985
No 178
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.56 E-value=2.6e-07 Score=108.18 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=46.2
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
..+.||||||..+ +...+..+++.+|.+| +|+++......+. ..+.+.+...+.+.++|+||+|+
T Consensus 82 ~~i~liDTPG~~d-------------f~~~~~~~l~~aD~aI-lVvDa~~gv~~qt-~~~~~~~~~~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 82 HRINIIDTPGHVD-------------FTIEVERSMRVLDGAV-MVYCAVGGVQPQS-ETVWRQANKYKVPRIAFVNKMDR 146 (704)
T ss_pred eeEEEEeCCCccc-------------hHHHHHHHHHHCCEEE-EEEeCCCCCcHHH-HHHHHHHHHcCCCEEEEEeCCCc
Confidence 4799999999642 3445667888888555 4555555443322 34445555567899999999999
Q ss_pred CCC
Q 005389 228 MDR 230 (699)
Q Consensus 228 ~~~ 230 (699)
...
T Consensus 147 ~~~ 149 (704)
T 2rdo_7 147 MGA 149 (704)
T ss_pred ccc
Confidence 754
No 179
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.55 E-value=9.5e-09 Score=115.24 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=41.1
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch--HHHHHHHhhCCCCCcEEEeecccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYRTIGIITKLD 226 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~~~~dp~g~rti~VlTK~D 226 (699)
.++||||||..+- ..+...++..+|.+||+| +++.....+ +.+.+++ ..+.++|+|+||+|
T Consensus 52 ~i~~iDTPGhe~f-------------~~~~~~~~~~aD~aILVV-da~~g~~~qT~e~l~~~~---~~~vPiIVviNKiD 114 (501)
T 1zo1_I 52 MITFLDTPGHAAF-------------TSMRARGAQATDIVVLVV-AADDGVMPQTIEAIQHAK---AAQVPVVVAVNKID 114 (501)
T ss_dssp CCCEECCCTTTCC-------------TTSBCSSSBSCSSEEEEE-ETTTBSCTTTHHHHHHHH---HTTCCEEEEEECSS
T ss_pred EEEEEECCCcHHH-------------HHHHHHHHhhCCEEEEEe-ecccCccHHHHHHHHHHH---hcCceEEEEEEecc
Confidence 5899999996432 122235677888555555 565543332 3344443 34688999999999
Q ss_pred cCCC
Q 005389 227 IMDR 230 (699)
Q Consensus 227 ~~~~ 230 (699)
+.+.
T Consensus 115 l~~~ 118 (501)
T 1zo1_I 115 KPEA 118 (501)
T ss_dssp SSTT
T ss_pred cccc
Confidence 9753
No 180
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.55 E-value=4.8e-07 Score=97.40 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G 69 (699)
..+.|+|+|.+|+|||||+++|.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999974
No 181
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.53 E-value=1.8e-07 Score=104.25 Aligned_cols=142 Identities=20% Similarity=0.310 Sum_probs=73.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC-CCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRD-FLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~-~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (699)
...|+++|..++|||||+|+|++.. .++... . ... ... ..+. |+...++.-+.+....+ +
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~-~-~~~------~~~--~~~~-------g~~~~~~a~~~d~~~~e--r 67 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRT-I-EKF------EKE--AAEL-------GKGSFKYAWVLDKLKAE--R 67 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHH-H-HHH------HHH--GGGG-------SSSCCCHHHHHHHHHHH--H
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHH-H-HHh------hhh--HHhc-------CCcchhhhhhhccchhH--H
Confidence 4579999999999999999998641 111000 0 000 000 0000 11111222222221111 1
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcc------
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL------ 199 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~------ 199 (699)
. .+++-+.....+..+. ..++||||||.. .+......++..+|.+ ++|+++....
T Consensus 68 ~----~GiTi~~~~~~~~~~~-~~~~iiDtPGh~-------------~f~~~~~~~~~~aD~~-ilVvda~~g~~~~sf~ 128 (458)
T 1f60_A 68 E----RGITIDIALWKFETPK-YQVTVIDAPGHR-------------DFIKNMITGTSQADCA-ILIIAGGVGEFEAGIS 128 (458)
T ss_dssp H----TTCCCSCSCEEEECSS-EEEEEEECCCCT-------------THHHHHHHSSSCCSEE-EEEEECSHHHHHHHTC
T ss_pred h----cCcEEEEEEEEEecCC-ceEEEEECCCcH-------------HHHHHHHhhhhhCCEE-EEEEeCCcCccccccC
Confidence 1 1222222223344433 369999999943 2334556788999854 4555665432
Q ss_pred ---cchHHHHHHHhhCCCCC-cEEEeecccccCC
Q 005389 200 ---ANSDALQIAGIADPDGY-RTIGIITKLDIMD 229 (699)
Q Consensus 200 ---~~~~~l~l~~~~dp~g~-rti~VlTK~D~~~ 229 (699)
.+.+.+.+++. .+. ++|+|+||+|+.+
T Consensus 129 ~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 129 KDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp TTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred cchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 12222334443 345 4899999999984
No 182
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.52 E-value=1.8e-07 Score=96.99 Aligned_cols=82 Identities=23% Similarity=0.353 Sum_probs=49.9
Q ss_pred cceEEEeCCCCCCCCCCCCc-hHHHHHHHHHHHHHhc--------------CCCeeEEEEecCCCcccchHHHHHHHhhC
Q 005389 148 LDITLVDLPGITKVPVGEQP-ADIEARIRTMIMSYIK--------------QPSCLILAVTPANSDLANSDALQIAGIAD 212 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~-~di~~~i~~lv~~yi~--------------~~~~iIL~V~~a~~d~~~~~~l~l~~~~d 212 (699)
+.++++|+||+.......+. ..+...+......++. .+.+.++++.+....+...+ ..+++.+.
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~ 138 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS 138 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH
Confidence 47999999999654322221 2233333322222222 23656666666667777666 67778877
Q ss_pred CCCCcEEEeecccccCCCc
Q 005389 213 PDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 213 p~g~rti~VlTK~D~~~~~ 231 (699)
.. ..+|.|+||+|.+.++
T Consensus 139 ~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 139 KV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp TT-SEEEEEETTGGGSCHH
T ss_pred hc-CcEEEEEeccccCCHH
Confidence 66 8999999999999754
No 183
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.48 E-value=4.7e-07 Score=97.28 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-..+.|+++|.+|||||||+|+|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999974
No 184
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.44 E-value=1.7e-07 Score=109.49 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=45.4
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
..+.||||||..+ +...+..+++.+|.+ ++|+++......+. ..+.+.+...+.+.++|+||+|+
T Consensus 77 ~~i~liDTPG~~d-------------f~~~~~~~l~~aD~~-ilVvDa~~g~~~~t-~~~~~~~~~~~~p~ivviNKiD~ 141 (691)
T 1dar_A 77 HRINIIDTPGHVD-------------FTIEVERSMRVLDGA-IVVFDSSQGVEPQS-ETVWRQAEKYKVPRIAFANKMDK 141 (691)
T ss_dssp EEEEEECCCSSTT-------------CHHHHHHHHHHCSEE-EEEEETTTCSCHHH-HHHHHHHHHTTCCEEEEEECTTS
T ss_pred eEEEEEECcCccc-------------hHHHHHHHHHHCCEE-EEEEECCCCcchhh-HHHHHHHHHcCCCEEEEEECCCc
Confidence 4799999999753 234566788888844 45555555443332 33334444457899999999999
Q ss_pred CCC
Q 005389 228 MDR 230 (699)
Q Consensus 228 ~~~ 230 (699)
...
T Consensus 142 ~~~ 144 (691)
T 1dar_A 142 TGA 144 (691)
T ss_dssp TTC
T ss_pred ccC
Confidence 854
No 185
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.44 E-value=6.8e-08 Score=104.60 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=30.8
Q ss_pred CCCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 21 ~~~~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-+..+-.+.+.|.+... -.+|+++|.+|+|||||+|+|+|..
T Consensus 143 ~g~gi~~L~~~l~~~~~---------~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 143 KGQGIAELADAIEYYRG---------GKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TCTTHHHHHHHHHHHHT---------TSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred CCcCHHHHHhhhhhhcc---------cceEEEecCCCCChhHHHHHHHhhh
Confidence 34556566666654321 2469999999999999999999874
No 186
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.43 E-value=2.2e-07 Score=102.78 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=41.8
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc-------ccchHHHHHHHhhCCCC-CcEE
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-------LANSDALQIAGIADPDG-YRTI 219 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-------~~~~~~l~l~~~~dp~g-~rti 219 (699)
..++||||||.. .+......|+..++.+||+ +++... +..+. .+.+..+...+ .++|
T Consensus 84 ~~~~iiDtpG~~-------------~f~~~~~~~~~~aD~~ilV-vDa~~gsfe~~~~~~~qt-~~~~~~~~~~~~~~ii 148 (435)
T 1jny_A 84 YFFTIIDAPGHR-------------DFVKNMITGASQADAAILV-VSAKKGEYEAGMSVEGQT-REHIILAKTMGLDQLI 148 (435)
T ss_dssp CEEEECCCSSST-------------THHHHHHHTSSCCSEEEEE-EECSTTHHHHHHSTTCHH-HHHHHHHHHTTCTTCE
T ss_pred eEEEEEECCCcH-------------HHHHHHHhhhhhcCEEEEE-EECCCCccccccccchHH-HHHHHHHHHcCCCeEE
Confidence 469999999954 2334456788999855555 555544 22222 22222222223 4689
Q ss_pred EeecccccCCC
Q 005389 220 GIITKLDIMDR 230 (699)
Q Consensus 220 ~VlTK~D~~~~ 230 (699)
+|+||+|+.+.
T Consensus 149 vviNK~Dl~~~ 159 (435)
T 1jny_A 149 VAVNKMDLTEP 159 (435)
T ss_dssp EEEECGGGSSS
T ss_pred EEEEcccCCCc
Confidence 99999999874
No 187
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.42 E-value=1.1e-06 Score=92.51 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcc
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~ 75 (699)
.|+|||+.|+|||||||.|.|....|.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~ 46 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPE 46 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCC
Confidence 579999999999999999999754444
No 188
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.40 E-value=3.6e-07 Score=88.96 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
..+|+|+|+.|||||||++.|+|..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999865
No 189
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.37 E-value=2.6e-07 Score=110.33 Aligned_cols=66 Identities=15% Similarity=0.212 Sum_probs=45.3
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
..+.||||||..+- ...+..|++.++++| +|+++......+. ..+.+.+...+.+.|+|+||+|+
T Consensus 98 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~ai-lVvDa~~g~~~qt-~~~~~~~~~~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDF-------------SSEVTAALRVTDGAL-VVVDTIEGVCVQT-ETVLRQALGERIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSS-------------CHHHHHHHHTCSEEE-EEEETTTBSCHHH-HHHHHHHHHTTCEEEEEEECHHH
T ss_pred ceEEEEECcCchhh-------------HHHHHHHHHhCCEEE-EEEeCCCCCCHHH-HHHHHHHHHcCCCeEEEEECCCc
Confidence 46899999997643 234667889998555 4556655544433 34444444457899999999999
Q ss_pred C
Q 005389 228 M 228 (699)
Q Consensus 228 ~ 228 (699)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 7
No 190
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.35 E-value=8.7e-07 Score=106.79 Aligned_cols=65 Identities=23% Similarity=0.244 Sum_probs=43.1
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch--HHHHHHHhhCCCCCc-EEEeecc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYR-TIGIITK 224 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~~~~dp~g~r-ti~VlTK 224 (699)
..++||||||. +.+......++..+|.+|| |++++.....+ +.+.+++. .+.+ +|+|+||
T Consensus 359 ~kI~IIDTPGH-------------edF~~~mi~gas~AD~aIL-VVDAtdGv~~QTrEhL~ll~~---lgIP~IIVVINK 421 (1289)
T 3avx_A 359 RHYAHVDCPGH-------------ADYVKNMITGAAQMDGAIL-VVAATDGPMPQTREHILLGRQ---VGVPYIIVFLNK 421 (1289)
T ss_dssp CEEEEEECCCH-------------HHHHHHHHHTSCCCSEEEE-EEETTTCSCTTHHHHHHHHHH---HTCSCEEEEEEC
T ss_pred EEEEEEECCCh-------------HHHHHHHHHHHhhCCEEEE-EEcCCccCcHHHHHHHHHHHH---cCCCeEEEEEee
Confidence 47999999993 2345566678899985555 55555443333 23444444 3566 7899999
Q ss_pred cccCC
Q 005389 225 LDIMD 229 (699)
Q Consensus 225 ~D~~~ 229 (699)
+|+.+
T Consensus 422 iDLv~ 426 (1289)
T 3avx_A 422 CDMVD 426 (1289)
T ss_dssp CTTCC
T ss_pred ccccc
Confidence 99985
No 191
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.34 E-value=1.2e-06 Score=96.21 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.+.|++||.+||||||||++|+|..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Confidence 3569999999999999999999985
No 192
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.33 E-value=1.3e-06 Score=101.58 Aligned_cols=131 Identities=20% Similarity=0.219 Sum_probs=75.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
...|+|+|..++|||||+++|++........|.. ..|....|+......
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-----------------------~~g~~~~d~~~~e~~-------- 57 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-----------------------EEGTTTTDYTPEAKL-------- 57 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-----------------------GGTCCSSCCSHHHHH--------
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-----------------------cCCcccccCCHHHHh--------
Confidence 4679999999999999999999754210111100 011222222221110
Q ss_pred cCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHH
Q 005389 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (699)
.+++-..-...+... ...+.||||||..+ +...+..|++.++.+++++ ++......+. ..
T Consensus 58 ----~giti~~~~~~~~~~-~~~~nliDTpG~~~-------------f~~~~~~~l~~ad~~ilVv-D~~~g~~~qt-~~ 117 (665)
T 2dy1_A 58 ----HRTTVRTGVAPLLFR-GHRVFLLDAPGYGD-------------FVGEIRGALEAADAALVAV-SAEAGVQVGT-ER 117 (665)
T ss_dssp ----TTSCCSCEEEEEEET-TEEEEEEECCCSGG-------------GHHHHHHHHHHCSEEEEEE-ETTTCSCHHH-HH
T ss_pred ----cCCeEEecceEEeeC-CEEEEEEeCCCccc-------------hHHHHHHHHhhcCcEEEEE-cCCcccchhH-HH
Confidence 122222222333333 24689999999642 2355677888888555555 4555443332 34
Q ss_pred HHHhhCCCCCcEEEeecccccC
Q 005389 207 IAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 207 l~~~~dp~g~rti~VlTK~D~~ 228 (699)
+.+.+...+.+.|+|+||+|+.
T Consensus 118 ~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 118 AWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHccCCEEEEecCCchh
Confidence 4444444578999999999997
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.31 E-value=5e-07 Score=97.23 Aligned_cols=37 Identities=27% Similarity=0.440 Sum_probs=25.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccce
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p 84 (699)
.+|++||.+|+|||||+|+|+|..+.......||..|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p 39 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP 39 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc
Confidence 4799999999999999999999873222222355544
No 194
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.27 E-value=5.7e-07 Score=100.44 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=36.0
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcc---------cchHHHHHHHhhCCCCCc-
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL---------ANSDALQIAGIADPDGYR- 217 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~---------~~~~~l~l~~~~dp~g~r- 217 (699)
..++||||||.. .+......++..++.+||+ +++.... .+.+.+.+++. .+.+
T Consensus 121 ~~~~iiDtPGh~-------------~f~~~~~~~~~~aD~~ilV-vDa~~g~~e~sf~~~~qt~e~l~~~~~---~~vp~ 183 (467)
T 1r5b_A 121 RRFSLLDAPGHK-------------GYVTNMINGASQADIGVLV-ISARRGEFEAGFERGGQTREHAVLART---QGINH 183 (467)
T ss_dssp EEEEECCCCC------------------------TTSCSEEEEE-EECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSS
T ss_pred eEEEEEECCCcH-------------HHHHHHHhhcccCCEEEEE-EeCCcCccccccCCCCcHHHHHHHHHH---cCCCE
Confidence 469999999953 2334445677889855555 5555442 22233334433 3565
Q ss_pred EEEeecccccCC
Q 005389 218 TIGIITKLDIMD 229 (699)
Q Consensus 218 ti~VlTK~D~~~ 229 (699)
+|+|+||+|+.+
T Consensus 184 iivviNK~Dl~~ 195 (467)
T 1r5b_A 184 LVVVINKMDEPS 195 (467)
T ss_dssp EEEEEECTTSTT
T ss_pred EEEEEECccCCC
Confidence 899999999965
No 195
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.26 E-value=2.7e-08 Score=114.31 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.+|+|+|..++|||||+|+|++.
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 196
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.26 E-value=4.2e-07 Score=93.08 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.5
Q ss_pred CCCEEEEEcCC---------CCcHHHHHHHHhCC
Q 005389 46 ELPQVAVVGSQ---------SSGKSSVLEALVGR 70 (699)
Q Consensus 46 ~lP~IvVvG~~---------ssGKSSLLnaL~G~ 70 (699)
...+|+|||.. |+|||||+|+|++.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 44589999999 99999999999984
No 197
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.25 E-value=1.5e-06 Score=98.84 Aligned_cols=134 Identities=13% Similarity=0.190 Sum_probs=73.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecC--CCccccChhHHHHHHHHHhhh
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHL--PGKRFYDFSEIRREIQAQTDK 125 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~--~g~~~~d~~~i~~~i~~~t~~ 125 (699)
..|+|||...+|||||.++|+-.. |. +++. +..... .+....|+.++.++
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~t------G~-i~~~--------------G~V~~~~~~~~~~~D~~~~Ere------- 83 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFG------GA-IQMA--------------GSVKARKAARHATSDWMAMERE------- 83 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHT------TC-HHHH--------------HHHHHC-----------------------
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhc------Cc-cccc--------------ceeecCccccccccCChHHHHH-------
Confidence 459999999999999999997321 00 0000 000000 01123344333222
Q ss_pred hcCCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHH
Q 005389 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (699)
Q Consensus 126 ~~~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (699)
.+..+....+.+ .+.+ ..+.||||||..+-. .-+.+.++-.|++||+| +|......+. .
T Consensus 84 ---RGITI~s~~~~~--~~~~-~~iNlIDTPGHvDF~-------------~Ev~raL~~~DgAvlVv-da~~GV~~qT-~ 142 (548)
T 3vqt_A 84 ---RGISVTTSVMQF--PYRD-RVVNLLDTPGHQDFS-------------EDTYRVLTAVDSALVVI-DAAKGVEAQT-R 142 (548)
T ss_dssp -------CTTTEEEE--EETT-EEEEEECCCCGGGCS-------------HHHHHHHHSCSEEEEEE-ETTTBSCHHH-H
T ss_pred ---CCCcEeeceEEE--EECC-EEEEEEeCCCcHHHH-------------HHHHHHHHhcCceEEEe-ecCCCccccc-H
Confidence 122333444444 3433 469999999976432 22345677788666655 5555554443 4
Q ss_pred HHHHhhCCCCCcEEEeecccccCCC
Q 005389 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 206 ~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.+.+.+...+.++|+++||+|+...
T Consensus 143 ~v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 143 KLMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp HHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred HHHHHHHHhCCceEEEEecccchhc
Confidence 5566666778999999999999754
No 198
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.19 E-value=1.5e-05 Score=81.09 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh-----CCCCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALV-----GRDFL 73 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~-----G~~~l 73 (699)
..+-++++|..|+||||++++|. |.+++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~ 45 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVA 45 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 45668889999999999999998 66543
No 199
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.18 E-value=1.5e-06 Score=94.37 Aligned_cols=37 Identities=27% Similarity=0.477 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccC-Cccccce
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRP 84 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~-~~~Tr~p 84 (699)
-.+|++||.+|+|||||+|+|+|..+ ..+. -.||..|
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p 59 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDP 59 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC--------------CC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCc
Confidence 45799999999999999999999875 3322 2355544
No 200
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.16 E-value=3.4e-06 Score=89.34 Aligned_cols=71 Identities=20% Similarity=0.313 Sum_probs=41.8
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch-HHH-HHH---HhhCCCCCcEEEee
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS-DAL-QIA---GIADPDGYRTIGII 222 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~-~~l-~l~---~~~dp~g~rti~Vl 222 (699)
..|.||||||-.+-.. + .+ +...|.++++++|+++ +....+... +.+ ++. +...+ +.++++|.
T Consensus 46 v~LqIWDTAGQErf~~---~-----~l--~~~~yyr~a~~~IlV~-Ditd~~~~~~~~l~~~l~~~~~~~~-~ipillvg 113 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFE---P-----SY--DSERLFKSVGALVYVI-DSQDEYINAITNLAMIIEYAYKVNP-SINIEVLI 113 (331)
T ss_dssp SCEEEEECCSCSSSCC---C-----SH--HHHHHHTTCSEEEEEC-CCSSCTTHHHHHHHHHHHHHHHHCT-TCEEEEEC
T ss_pred EEEEEEECCCchhccc---h-----hh--hhhhhccCCCEEEEEE-ECCchHHHHHHHHHHHHHHHhhcCC-CCcEEEEE
Confidence 4799999999543210 0 01 3457899998655554 444332111 111 112 23334 68999999
Q ss_pred cccccCCC
Q 005389 223 TKLDIMDR 230 (699)
Q Consensus 223 TK~D~~~~ 230 (699)
||+|+.+.
T Consensus 114 NK~DL~~~ 121 (331)
T 3r7w_B 114 HKVDGLSE 121 (331)
T ss_dssp CCCCSSCS
T ss_pred ECcccCch
Confidence 99999864
No 201
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.14 E-value=3.9e-05 Score=84.49 Aligned_cols=81 Identities=21% Similarity=0.213 Sum_probs=52.0
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
.++.||||||..... ......++.+ .. +..++ .+++|++|... +++...++.+.+....+.+|+||+|.
T Consensus 183 ~DvVIIDTaGrl~~d-----~~lm~el~~i-~~-~~~pd-~vlLVvDA~~g---q~a~~~a~~f~~~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 183 VDIIIVDTAGRHKED-----KALIEEMKQI-SN-VIHPH-EVILVIDGTIG---QQAYNQALAFKEATPIGSIIVTKLDG 251 (443)
T ss_dssp CSEEEEECCCCSSCC-----HHHHHHHHHH-HH-HHCCS-EEEEEEEGGGG---GGHHHHHHHHHHSCTTEEEEEECCSS
T ss_pred CCEEEEECCCcccch-----HHHHHHHHHH-HH-hhcCc-eEEEEEeCCCc---hhHHHHHHHHHhhCCCeEEEEECCCC
Confidence 479999999976431 2222333333 22 33566 56666776653 45667777777666778899999999
Q ss_pred CCCcccHHHHhc
Q 005389 228 MDRGTDARNLLL 239 (699)
Q Consensus 228 ~~~~~~~~~~l~ 239 (699)
...+..+..+..
T Consensus 252 ~~~gG~~ls~~~ 263 (443)
T 3dm5_A 252 SAKGGGALSAVA 263 (443)
T ss_dssp CSSHHHHHHHHH
T ss_pred cccccHHHHHHH
Confidence 877655555443
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.12 E-value=2.1e-06 Score=91.88 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
..+.|+++|.+|+|||||+|+|+|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999754
No 203
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.12 E-value=6.6e-06 Score=85.67 Aligned_cols=32 Identities=19% Similarity=0.437 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCcccC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~ 77 (699)
...+|+|||.+|+|||||+|+|+|.....++.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~ 150 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGD 150 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC----
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCC
Confidence 34579999999999999999999987544443
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.12 E-value=9.6e-06 Score=90.97 Aligned_cols=76 Identities=25% Similarity=0.229 Sum_probs=44.8
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCc-EEEeecccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKLD 226 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~r-ti~VlTK~D 226 (699)
.+++||||||..... ..+...+..+. .++ .++ .+++|+++.... +++..++.+... .+ +++|+||+|
T Consensus 184 ~DvvIIDTpG~~~~~-----~~l~~el~~~~-~~i-~pd-~vllVvDa~~g~---~~~~~a~~~~~~-~~i~gvVlNK~D 251 (504)
T 2j37_W 184 FEIIIVDTSGRHKQE-----DSLFEEMLQVA-NAI-QPD-NIVYVMDASIGQ---ACEAQAKAFKDK-VDVASVIVTKLD 251 (504)
T ss_dssp CCEEEEEECCCCTTC-----HHHHHHHHHHH-HHH-CCS-EEEEEEETTCCT---THHHHHHHHHHH-HCCCCEEEECTT
T ss_pred CcEEEEeCCCCcccc-----hhHHHHHHHHH-hhh-cCc-eEEEEEeccccc---cHHHHHHHHHhh-cCceEEEEeCCc
Confidence 379999999987531 22222333322 233 676 556677776543 245555555432 45 589999999
Q ss_pred cCCCcccHH
Q 005389 227 IMDRGTDAR 235 (699)
Q Consensus 227 ~~~~~~~~~ 235 (699)
....+..+.
T Consensus 252 ~~~~~g~~l 260 (504)
T 2j37_W 252 GHAKGGGAL 260 (504)
T ss_dssp SCCCCTHHH
T ss_pred cccchHHHH
Confidence 986554333
No 205
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.09 E-value=4.2e-05 Score=81.60 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.-..|+++|.+|||||||+|+|+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999965
No 206
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.07 E-value=3.3e-06 Score=91.24 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=27.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccce
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p 84 (699)
.+|++||.+|+|||||+|+|+|..........||..|
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~p 38 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDK 38 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGST
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecc
Confidence 4699999999999999999998752112223356555
No 207
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.07 E-value=1.8e-06 Score=100.10 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=77.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhhc
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (699)
..|+|+|...+|||||.++|+-.. |...+. +.. ..|....|+.++.++ |
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~------G~i~~~---------------g~v--~~g~~~~D~~~~Ere------R-- 51 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNS------GAITEL---------------GSV--DKGTTRTDNTLLERQ------R-- 51 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHH------TCCSSC---------------SSC--CCSCCSTTCSTTHHH------H--
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc------CCCccc---------------ccc--ccCCcccCCcHHHHh------C--
Confidence 458999999999999999996221 000000 000 012234454443322 1
Q ss_pred CCCCCccccceEEEEecCCccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHH
Q 005389 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (699)
Q Consensus 128 ~~~~~~s~~~i~l~i~~p~~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (699)
+..+....+.+ .+.+ ..++||||||..+- ..-+.+.++-.|+.||+| +|......+. ..+
T Consensus 52 --GITI~s~~~~~--~~~~-~~iNlIDTPGH~DF-------------~~Ev~raL~~~DgavlVV-Da~~GV~~qT-~~v 111 (638)
T 3j25_A 52 --GITIQTGITSF--QWEN-TKVNIIDTPGHMDF-------------LAEVYRSLSVLDGAILLI-SAKDGVQAQT-RIL 111 (638)
T ss_dssp --SSCSSCCCCCC--BCSS-CBCCCEECCCSSST-------------HHHHHHHHTTCSEEECCE-ESSCTTCSHH-HHH
T ss_pred --CCcEEeeeEEE--EECC-EEEEEEECCCcHHH-------------HHHHHHHHHHhCEEEEEE-eCCCCCcHHH-HHH
Confidence 12222333333 3333 46899999997532 233446678888555554 5655555444 455
Q ss_pred HHhhCCCCCcEEEeecccccCCCc
Q 005389 208 AGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 208 ~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
.+.+...+.+.|+++||+|.....
T Consensus 112 ~~~a~~~~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 112 FHALRKMGIPTIFFINKIDQNGID 135 (638)
T ss_dssp HHHHHHHTCSCEECCEECCSSSCC
T ss_pred HHHHHHcCCCeEEEEeccccccCC
Confidence 566666678999999999997543
No 208
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.06 E-value=1e-05 Score=88.49 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=41.9
Q ss_pred ccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccc
Q 005389 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (699)
Q Consensus 147 ~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D 226 (699)
.++++++|+||+.... ..+.+.+..+ -+...+ .+++ .+... ... ..+.+++.+...+.++++|+||+|
T Consensus 119 ~~~ltv~D~~g~~~~~-----~~~~~~L~~~---~L~~~~-~~~~-lS~G~-~~k-qrv~la~aL~~~~~p~~lV~tkpd 186 (413)
T 1tq4_A 119 IPNVVFWDLPGIGSTN-----FPPDTYLEKM---KFYEYD-FFII-ISATR-FKK-NDIDIAKAISMMKKEFYFVRTKVD 186 (413)
T ss_dssp CTTEEEEECCCGGGSS-----CCHHHHHHHT---TGGGCS-EEEE-EESSC-CCH-HHHHHHHHHHHTTCEEEEEECCHH
T ss_pred cCCeeehHhhcccchH-----HHHHHHHHHc---CCCccC-CeEE-eCCCC-ccH-HHHHHHHHHHhcCCCeEEEEecCc
Confidence 3579999999986421 1122222221 122333 3333 44433 233 336788888777899999999999
Q ss_pred cC
Q 005389 227 IM 228 (699)
Q Consensus 227 ~~ 228 (699)
++
T Consensus 187 ll 188 (413)
T 1tq4_A 187 SD 188 (413)
T ss_dssp HH
T ss_pred cc
Confidence 85
No 209
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.99 E-value=9.3e-06 Score=92.63 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005389 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (699)
Q Consensus 45 ~~lP~IvVvG~~ssGKSSLLnaL~G~~~ 72 (699)
-..+.|+|||.+|+|||||||+|+|...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 3567899999999999999999999863
No 210
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.98 E-value=8.5e-06 Score=95.57 Aligned_cols=136 Identities=11% Similarity=0.137 Sum_probs=73.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccCCccccceEEEEeeccCCCcccceeecCCCccccChhHHHHHHHHHhhhh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (699)
+..|+|||...+|||||.++|+-.. |. ++..-.+ ..|.++.|+.++.++
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~------g~-i~~~g~v----------------~~~~~~~D~~~~E~e-------- 61 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYT------GV-NHKLGEV----------------HDGAATTDWMVQEQE-------- 61 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHH------HH-HHHC------------------------------------------
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhc------CC-CCcCcee----------------cCCCccCCChHHHHH--------
Confidence 4569999999999999999997321 10 0010000 012233444333221
Q ss_pred cCCCCCccccceEEEEecCC----ccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccch
Q 005389 127 AGGNKGVSDKQIRLKIFSPH----VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (699)
Q Consensus 127 ~~~~~~~s~~~i~l~i~~p~----~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (699)
.+..+....+.+...+.. ...+.||||||..+- ..-+.+.++-.|..||+| +|......+
T Consensus 62 --RGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF-------------~~Ev~~aLr~~DgavlvV-DaveGV~~q 125 (709)
T 4fn5_A 62 --RGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDF-------------TIEVERSLRVLDGAVVVF-CGTSGVEPQ 125 (709)
T ss_dssp --------CCEEEEEECCTTSCSCCEEEEEECCCSCTTC-------------HHHHHHHHHHCSEEEEEE-ETTTCSCHH
T ss_pred --cCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCccc-------------HHHHHHHHHHhCeEEEEE-ECCCCCchh
Confidence 122334455555554332 246999999997632 222345566677666555 555555444
Q ss_pred HHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 203 DALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 203 ~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
. ..+.+++...+.+.|+|+||+|+...
T Consensus 126 T-~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 126 S-ETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp H-HHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred H-HHHHHHHHHcCCCeEEEEccccccCc
Confidence 3 55666666678999999999999643
No 211
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.95 E-value=1.2e-05 Score=79.47 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
..|.|+|+|..|+|||||+++|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4688999999999999999999875
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.88 E-value=1.3e-05 Score=87.16 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=29.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcccC-CccccceE
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPL 85 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~~lP~~~-~~~Tr~p~ 85 (699)
-..|++||.+|||||||+|+|+|..+...+. -.||..|.
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~ 59 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE 59 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce
Confidence 4579999999999999999999987533333 33566653
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.71 E-value=8.8e-05 Score=81.75 Aligned_cols=77 Identities=23% Similarity=0.182 Sum_probs=45.4
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHH-HHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCC-CcEEEeeccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMI-MSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDG-YRTIGIITKL 225 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv-~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g-~rti~VlTK~ 225 (699)
.++.||||||..... ...+..+. ...+..++ .+++|+++.... ++...++.+.+.. ..+.+|+||+
T Consensus 181 ~D~vIIDT~G~~~~~--------~~l~~~l~~i~~~~~~d-~vllVvda~~g~---~~~~~~~~~~~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEE--------KGLLEEMKQIKEITNPD-EIILVIDGTIGQ---QAGIQAKAFKEAVGEIGSIIVTKL 248 (432)
T ss_dssp CSEEEEECCCSCSSH--------HHHHHHHHHTTSSSCCS-EEEEEEEGGGGG---GHHHHHHHHHTTSCSCEEEEEECS
T ss_pred CCEEEEcCCCCcccc--------HHHHHHHHHHHHHhcCc-ceeEEeeccccH---HHHHHHHHHhhcccCCeEEEEeCC
Confidence 479999999986421 11222221 11222566 566677665442 4566666665433 3389999999
Q ss_pred ccCCCcccHHH
Q 005389 226 DIMDRGTDARN 236 (699)
Q Consensus 226 D~~~~~~~~~~ 236 (699)
|....+..+..
T Consensus 249 D~~~~~g~~l~ 259 (432)
T 2v3c_C 249 DGSAKGGGALS 259 (432)
T ss_dssp SSCSTTHHHHH
T ss_pred CCccchHHHHH
Confidence 99765443433
No 214
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.65 E-value=9.3e-05 Score=81.38 Aligned_cols=81 Identities=22% Similarity=0.267 Sum_probs=47.0
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
.++.||||||....+. . ...-..+..+. ..+ .++ .+++|+++... +++...++.+......+.+|+||+|.
T Consensus 180 ~DvvIIDTaGr~~~~~--d-~~lm~el~~i~-~~~-~pd-~vlLVlDa~~g---q~a~~~a~~f~~~~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGE--E-TKLLEEMKEMY-DVL-KPD-DVILVIDASIG---QKAYDLASRFHQASPIGSVIITKMDG 250 (433)
T ss_dssp CSEEEEEECCCSSSCC--T-THHHHHHHHHH-HHH-CCS-EEEEEEEGGGG---GGGHHHHHHHHHHCSSEEEEEECGGG
T ss_pred CCEEEEECCCCccccC--C-HHHHHHHHHHH-Hhh-CCc-ceEEEEeCccc---hHHHHHHHHHhcccCCcEEEEecccc
Confidence 4799999999754101 1 12222333322 223 455 45555666543 34456666666545678899999999
Q ss_pred CCCcccHHHH
Q 005389 228 MDRGTDARNL 237 (699)
Q Consensus 228 ~~~~~~~~~~ 237 (699)
...+..+..+
T Consensus 251 ~a~~G~als~ 260 (433)
T 3kl4_A 251 TAKGGGALSA 260 (433)
T ss_dssp CSCHHHHHHH
T ss_pred cccchHHHHH
Confidence 8765544443
No 215
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.64 E-value=2.9e-05 Score=79.93 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=23.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRDFL 73 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~~l 73 (699)
.+|+|||.+|+|||||+|+|+|....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~ 125 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS 125 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc
Confidence 68999999999999999999998753
No 216
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.63 E-value=0.00011 Score=81.74 Aligned_cols=82 Identities=16% Similarity=0.140 Sum_probs=46.8
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHH---HHHHhc-CCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTM---IMSYIK-QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITK 224 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~l---v~~yi~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK 224 (699)
++.||||+|..... .+....+..+ +..... .++. +|+|.++... ++++..++.+...-.-+.+|+||
T Consensus 377 DvVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~e-vLLvLDattG---q~al~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 377 DVLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHE-VMLTIDASTG---QNAVSQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp SEEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSSE-EEEEEEGGGT---HHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CEEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCCe-eEEEecCccc---HHHHHHHHHHHhhcCCCEEEEEc
Confidence 68999999985331 1222222222 222222 3543 4445555433 45566666665444567899999
Q ss_pred cccCCCcccHHHHhc
Q 005389 225 LDIMDRGTDARNLLL 239 (699)
Q Consensus 225 ~D~~~~~~~~~~~l~ 239 (699)
+|....+..+..++.
T Consensus 448 LD~takgG~~lsi~~ 462 (503)
T 2yhs_A 448 LDGTAKGGVIFSVAD 462 (503)
T ss_dssp GGGCSCCTHHHHHHH
T ss_pred CCCcccccHHHHHHH
Confidence 998766666655543
No 217
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.60 E-value=0.00015 Score=71.78 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
..+.|+|+|..|+|||||++.|++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998764
No 218
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.59 E-value=0.00049 Score=71.93 Aligned_cols=97 Identities=21% Similarity=0.135 Sum_probs=52.0
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhc--CCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKL 225 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~ 225 (699)
+++.|+||||+.... ...+.++. ..+. .++ -+++|+++..+. .++.++++.+.. -...-+|+||+
T Consensus 183 ~dlvIiDT~G~~~~~--------~~~~~el~-~~l~~~~~~-~~~lVl~at~~~--~~~~~~~~~~~~-l~~~giVltk~ 249 (296)
T 2px0_A 183 YDHVFVDTAGRNFKD--------PQYIDELK-ETIPFESSI-QSFLVLSATAKY--EDMKHIVKRFSS-VPVNQYIFTKI 249 (296)
T ss_dssp SSEEEEECCCCCTTS--------HHHHHHHH-HHSCCCTTE-EEEEEEETTBCH--HHHHHHTTTTSS-SCCCEEEEECT
T ss_pred CCEEEEeCCCCChhh--------HHHHHHHH-HHHhhcCCC-eEEEEEECCCCH--HHHHHHHHHHhc-CCCCEEEEeCC
Confidence 579999999987431 12333332 2333 244 455666665442 344455555542 23456778999
Q ss_pred ccCCCcccHHHHhcCCccccccCEEEEEcCChhh
Q 005389 226 DIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 259 (699)
Q Consensus 226 D~~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d 259 (699)
|....+..+..++.....| .-|+++..+-+.|
T Consensus 250 D~~~~~g~~~~~~~~~~~p--i~~i~~ge~vp~d 281 (296)
T 2px0_A 250 DETTSLGSVFNILAESKIG--VGFMTNGQNVPED 281 (296)
T ss_dssp TTCSCCHHHHHHHHTCSCC--CSEECCSSCTTTS
T ss_pred CcccchhHHHHHHHHHCcC--EEEEECCCCChHH
Confidence 9887665555555433333 3455544333333
No 219
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.47 E-value=0.00048 Score=75.88 Aligned_cols=77 Identities=27% Similarity=0.203 Sum_probs=43.1
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
.+++||||||..... ......+..+ .++..++.+ ++|+++... ++++..++.+.+.-.-+-+|+||+|.
T Consensus 184 ~D~VIIDTpG~l~~~-----~~l~~~L~~~--~~~~~p~~v-llVvda~~g---~~~~~~~~~f~~~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVD-----EAMMDEIKQV--HASINPVET-LFVVDAMTG---QDAANTAKAFNEALPLTGVVLTKVDG 252 (433)
T ss_dssp CSEEEEECCCCCTTC-----HHHHHHHHHH--HHHSCCSEE-EEEEETTBC---TTHHHHHHHHHHHSCCCCEEEECTTS
T ss_pred CCEEEEECCCccccc-----HHHHHHHHHH--HHhhcCcce-eEEeecchh---HHHHHHHHHHhccCCCeEEEEecCCC
Confidence 379999999975431 1111122221 345567644 455566533 45566666665422225579999998
Q ss_pred CCCcccHH
Q 005389 228 MDRGTDAR 235 (699)
Q Consensus 228 ~~~~~~~~ 235 (699)
...+..+.
T Consensus 253 ~~~~g~~l 260 (433)
T 2xxa_A 253 DARGGAAL 260 (433)
T ss_dssp SSCCTHHH
T ss_pred CccHHHHH
Confidence 76554333
No 220
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.35 E-value=0.00053 Score=71.73 Aligned_cols=82 Identities=22% Similarity=0.244 Sum_probs=45.3
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
.++.||||||...... ...+...++.+ . .+..++.++| |+++.. .++++..++.+.+.-.-+.+|+||+|.
T Consensus 181 ~D~ViIDTpg~~~~~~---~~~l~~el~~i-~-~~~~~d~vll-Vvda~~---g~~~~~~~~~~~~~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGE---EAALLEEMKNI-Y-EAIKPDEVTL-VIDASI---GQKAYDLASKFNQASKIGTIIITKMDG 251 (297)
T ss_dssp CSEEEEECCCSCCTTC---HHHHHHHHHHH-H-HHHCCSEEEE-EEEGGG---GGGHHHHHHHHHHTCTTEEEEEECGGG
T ss_pred CCEEEEeCCCCccccc---HHHHHHHHHHH-H-HHhcCCEEEE-EeeCCc---hHHHHHHHHHHHhhCCCCEEEEeCCCC
Confidence 4799999999865100 01111122222 1 2335664544 455543 245566677665532337889999998
Q ss_pred CCCcccHHHHh
Q 005389 228 MDRGTDARNLL 238 (699)
Q Consensus 228 ~~~~~~~~~~l 238 (699)
...+..+..+.
T Consensus 252 ~~~~g~~~~~~ 262 (297)
T 1j8m_F 252 TAKGGGALSAV 262 (297)
T ss_dssp CTTHHHHHHHH
T ss_pred CcchHHHHHHH
Confidence 76554444443
No 221
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.32 E-value=0.00042 Score=76.39 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.--|+|+|.+++|||+|||.|+|.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhhh
Confidence 345888999999999999999974
No 222
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.31 E-value=0.00058 Score=71.65 Aligned_cols=100 Identities=20% Similarity=0.188 Sum_probs=53.3
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccC
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
++.++||+|..... ...+..+..+...+.+..+..|+ .++++.++... .+++..++.+......+++|+||.|..
T Consensus 186 d~~llDt~G~~~~~-~~~~~eLs~~r~~iaRal~~~P~-~~lLvLDa~t~---~~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 186 DLLFVDTAGRLHTK-HNLMEELKKVKRAIAKADPEEPK-EVWLVLDAVTG---QNGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp SEEEECCCCCCTTC-HHHHHHHHHHHHHHHHHCTTCCS-EEEEEEETTBC---THHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred CEEEecCCCCCCch-HHHHHHHHHHHHHHHHhhcCCCC-eEEEEEcHHHH---HHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 57799999985431 11123333222233333344566 55556766543 344555555443334689999999987
Q ss_pred CCcccHHHHhcCCccccccCEEEEEcC
Q 005389 229 DRGTDARNLLLGKVIPLRLGYVGVVNR 255 (699)
Q Consensus 229 ~~~~~~~~~l~~~~~~l~lG~~~V~nr 255 (699)
..+..+..+... ..+..-|+++-.+
T Consensus 261 a~gg~~l~i~~~--~~~pi~~ig~Ge~ 285 (304)
T 1rj9_A 261 AKGGVLIPIVRT--LKVPIKFVGVGEG 285 (304)
T ss_dssp CCCTTHHHHHHH--HCCCEEEEECSSS
T ss_pred ccccHHHHHHHH--HCCCeEEEeCCCC
Confidence 665555443322 1233446665443
No 223
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.24 E-value=0.00018 Score=75.58 Aligned_cols=97 Identities=23% Similarity=0.240 Sum_probs=51.4
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHH---HHhc-CCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeec
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIM---SYIK-QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIIT 223 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~---~yi~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlT 223 (699)
+++.|+||||.... ...+...+..+.. ..+. .++ .+++|+++.. .++++..++.+.....-+-+|+|
T Consensus 187 ~dvvIiDtpg~~~~-----~~~l~~eL~~l~~~i~~~i~~~p~-~vllVlda~t---~~~~l~~a~~~~~~~~i~gvVlT 257 (306)
T 1vma_A 187 KDVVIIDTAGRLHT-----KKNLMEELRKVHRVVKKKIPDAPH-ETLLVIDATT---GQNGLVQAKIFKEAVNVTGIILT 257 (306)
T ss_dssp CSEEEEEECCCCSC-----HHHHHHHHHHHHHHGGGTCTTCCS-EEEEEEEGGG---HHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CCEEEEECCCchhh-----HHHHHHHHHHHHHHHhhccCCCCc-EEEEEEECCC---CHHHHHHHHHHHhcCCCCEEEEe
Confidence 47999999996322 1222223333221 1223 355 4555666652 24455555555433345678899
Q ss_pred ccccCCCcccHHHHhcCCccccccCEEEEEcC
Q 005389 224 KLDIMDRGTDARNLLLGKVIPLRLGYVGVVNR 255 (699)
Q Consensus 224 K~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nr 255 (699)
|+|....+..+.++...-.. ..-|+++-.+
T Consensus 258 k~D~~~~gG~~l~~~~~~~~--Pi~~i~~Ge~ 287 (306)
T 1vma_A 258 KLDGTAKGGITLAIARELGI--PIKFIGVGEK 287 (306)
T ss_dssp CGGGCSCTTHHHHHHHHHCC--CEEEEECSSS
T ss_pred CCCCccchHHHHHHHHHHCC--CEEEEeCCCC
Confidence 99988776655554432222 2345555444
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.24 E-value=0.00079 Score=71.40 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=45.2
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccC
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
++.++||+|..... ......+..+. +.+ .++- .++|.++... ++++..++.+.....-+++|+||+|..
T Consensus 213 d~vliDtaG~~~~~-----~~l~~eL~~i~-ral-~~de-~llvLDa~t~---~~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 213 DVVLIDTAGRSETN-----RNLMDEMKKIA-RVT-KPNL-VIFVGDALAG---NAIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp SEEEEEECCSCCTT-----TCHHHHHHHHH-HHH-CCSE-EEEEEEGGGT---THHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred hhhHHhhccchhHH-----HHHHHHHHHHH-HHh-cCCC-CEEEEecHHH---HHHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 57899999986432 11222333332 222 3553 4444554332 566777777765456789999999986
Q ss_pred CCcccHHHH
Q 005389 229 DRGTDARNL 237 (699)
Q Consensus 229 ~~~~~~~~~ 237 (699)
..+..+..+
T Consensus 282 a~~G~~l~~ 290 (328)
T 3e70_C 282 ARGGAALSI 290 (328)
T ss_dssp SCCHHHHHH
T ss_pred cchhHHHHH
Confidence 555444443
No 225
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.07 E-value=0.007 Score=63.86 Aligned_cols=97 Identities=22% Similarity=0.240 Sum_probs=51.4
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHH---HHHHHhc-CCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeec
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRT---MIMSYIK-QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIIT 223 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~---lv~~yi~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlT 223 (699)
.+++||||||..... ......+.. .+...+. .++ -+++|+++... ++++..++.+.+...-+-+|+|
T Consensus 192 yD~VIIDTpg~l~~~-----~~l~~eL~~~~~vi~~~~p~~~d-~vllVl~a~~~---~~~l~~~~~~~~~~~i~GvVlt 262 (320)
T 1zu4_A 192 YDLLLIDTAGRLQNK-----TNLMAELEKMNKIIQQVEKSAPH-EVLLVIDATTG---QNGVIQAEEFSKVADVSGIILT 262 (320)
T ss_dssp CSEEEEECCCCGGGH-----HHHHHHHHHHHHHHHTTCTTCCS-EEEEEEEGGGT---HHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCEEEEcCCCccccc-----HHHHHHHHHHHHHHhcccCCCCc-eEEEEEECCCc---HHHHHHHHHHhhcCCCcEEEEe
Confidence 479999999976431 111111211 1211222 355 45556665532 5566667777655445567899
Q ss_pred ccccCCCcccHHHHhcCCccccccCEEEEEcC
Q 005389 224 KLDIMDRGTDARNLLLGKVIPLRLGYVGVVNR 255 (699)
Q Consensus 224 K~D~~~~~~~~~~~l~~~~~~l~lG~~~V~nr 255 (699)
|+|....+..+..++..-..|+ -|+++..+
T Consensus 263 k~d~~~~~g~~~~~~~~~~~Pi--~~i~~Ge~ 292 (320)
T 1zu4_A 263 KMDSTSKGGIGLAIKELLNIPI--KMIGVGEK 292 (320)
T ss_dssp CGGGCSCTTHHHHHHHHHCCCE--EEEECSSS
T ss_pred CCCCCCchhHHHHHHHHHCcCE--EEEeCCCC
Confidence 9998766554444433222232 35554433
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.98 E-value=0.0013 Score=72.17 Aligned_cols=79 Identities=25% Similarity=0.264 Sum_probs=44.7
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
.+++||||||..... ..+-..+..+ ...+ .++.++ +|+++.. .++++..++.+.+.-..+.+|+||+|.
T Consensus 181 ~DvVIIDTaG~l~~d-----~~l~~el~~i-~~~~-~pd~vl-LVvDa~t---gq~av~~a~~f~~~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 181 RDLILVDTAGRLQID-----EPLMGELARL-KEVL-GPDEVL-LVLDAMT---GQEALSVARAFDEKVGVTGLVLTKLDG 249 (425)
T ss_dssp CSEEEEECCCCSSCC-----HHHHHHHHHH-HHHH-CCSEEE-EEEEGGG---TTHHHHHHHHHHHHTCCCEEEEESGGG
T ss_pred CCEEEEcCCCccccc-----HHHHHHHHHh-hhcc-CCceEE-EEEeccc---hHHHHHHHHHHHhcCCceEEEEeCcCC
Confidence 479999999975431 1111222221 1222 566454 5555543 356677777665433447789999998
Q ss_pred CCCcccHHHH
Q 005389 228 MDRGTDARNL 237 (699)
Q Consensus 228 ~~~~~~~~~~ 237 (699)
...+..+..+
T Consensus 250 ~~~~g~alsi 259 (425)
T 2ffh_A 250 DARGGAALSA 259 (425)
T ss_dssp CSSCHHHHHH
T ss_pred cccHHHHHHH
Confidence 7655444443
No 227
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.54 E-value=0.0066 Score=63.23 Aligned_cols=94 Identities=24% Similarity=0.251 Sum_probs=48.5
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
+++.|+||||..... ......+..+. ..+ .++.++ +|+++.. ..+++..++.+.+.-.-.-+|+||+|.
T Consensus 181 ~D~viiDtpp~~~~d-----~~~~~~l~~~~-~~~-~~~~~~-lv~~~~~---~~~~~~~~~~~~~~~~i~givlnk~d~ 249 (295)
T 1ls1_A 181 RDLILVDTAGRLQID-----EPLMGELARLK-EVL-GPDEVL-LVLDAMT---GQEALSVARAFDEKVGVTGLVLTKLDG 249 (295)
T ss_dssp CCEEEEECCCCSSCC-----HHHHHHHHHHH-HHH-CCSEEE-EEEEGGG---THHHHHHHHHHHHHTCCCEEEEECGGG
T ss_pred CCEEEEeCCCCcccc-----HHHHHHHHHHh-hhc-CCCEEE-EEEeCCC---cHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 479999999975431 11122222222 222 466454 5555543 255566666554432335678999998
Q ss_pred CCCcccHHHHhcCCccccccCEEEEEc
Q 005389 228 MDRGTDARNLLLGKVIPLRLGYVGVVN 254 (699)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~n 254 (699)
...+..+.+++.....| .-|+++..
T Consensus 250 ~~~~g~~~~~~~~~~~p--i~~i~~g~ 274 (295)
T 1ls1_A 250 DARGGAALSARHVTGKP--IYFAGVSE 274 (295)
T ss_dssp CSSCHHHHHHHHHHCCC--EEEEC---
T ss_pred CccHHHHHHHHHHHCcC--EEEEeCCC
Confidence 76655555544322223 23555543
No 228
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.44 E-value=0.0078 Score=64.49 Aligned_cols=85 Identities=22% Similarity=0.149 Sum_probs=45.0
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccC
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
+..++||.|+.... ...+.++..+...+....+.+|+-++|++ |+...+ |+...++.+......+++|+||.|..
T Consensus 242 d~~lldt~Gl~~~~-~~~~~eLSkqr~~iaral~~~P~e~lLvL-Dpttgl---D~~~~~~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 242 DVVLCDTSGRLHTN-YSLMEELIACKKAVGKIVSGAPNEILLVL-DGNTGL---NMLPQAREFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp SEEEEECCCCSSCC-HHHHHHHHHHHHHHHHHSTTCCSEEEEEE-EGGGGG---GGHHHHHHHHHHTCCCEEEEESCTTC
T ss_pred HHHHHHhcCCChhh-hhHHHHHHHHHHHHHHHHhcCCCceEEEE-cCCCCC---CHHHHHHHHHHhcCCeEEEEecCccc
Confidence 46789999986432 11112333232333333445666445444 444333 33333444432234689999999987
Q ss_pred CCcccHHHHh
Q 005389 229 DRGTDARNLL 238 (699)
Q Consensus 229 ~~~~~~~~~l 238 (699)
..+..+..+.
T Consensus 317 ~~gG~~lsi~ 326 (359)
T 2og2_A 317 ARGGCVVSVV 326 (359)
T ss_dssp SCTHHHHHHH
T ss_pred ccccHHHHHH
Confidence 7666554443
No 229
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.32 E-value=0.0094 Score=62.33 Aligned_cols=85 Identities=22% Similarity=0.152 Sum_probs=43.3
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccC
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~ 228 (699)
+..++|+.|+.... ...+.++..+...+....+.+|+-++|++. +...+ |+...++.+......+++++||.|..
T Consensus 185 d~~lldt~gl~~~~-~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsgl---D~~~~~~~~~~~~g~t~iiiThlD~~ 259 (302)
T 3b9q_A 185 DVVLCDTSGRLHTN-YSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGL---NMLPQAREFNEVVGITGLILTKLDGS 259 (302)
T ss_dssp SEEEECCCCCSSCC-HHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGG---GGHHHHHHHHHHTCCCEEEEECCSSC
T ss_pred cchHHhcCCCCcch-hHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCc---CHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 36789999986432 011122322222222223345664455444 54333 22333444432234689999999987
Q ss_pred CCcccHHHHh
Q 005389 229 DRGTDARNLL 238 (699)
Q Consensus 229 ~~~~~~~~~l 238 (699)
..+.....+.
T Consensus 260 ~~~g~~l~~~ 269 (302)
T 3b9q_A 260 ARGGCVVSVV 269 (302)
T ss_dssp SCTHHHHHHH
T ss_pred CccChheehH
Confidence 6665554443
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.58 E-value=0.0052 Score=64.41 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-.++++|..|||||||||+|+|..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 479999999999999999999974
No 231
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.54 E-value=0.046 Score=60.03 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005389 48 PQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~ 68 (699)
--|+|+|.+++|||+|+|.|+
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 346789999999999999776
No 232
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.89 E-value=0.11 Score=53.46 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 173 RIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
.....+.+++.+++ +|+.|++|........ ..+.+.+ .+++.++|+||+|+.+.
T Consensus 12 ka~~~~~~~l~~aD-vVl~VvDAr~p~~~~~-~~l~~~l--~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 12 KARREVTEKLKLID-IVYELVDARIPMSSRN-PMIEDIL--KNKPRIMLLNKADKADA 65 (282)
T ss_dssp HHHHHHHHHGGGCS-EEEEEEETTSTTTTSC-HHHHHHC--SSSCEEEEEECGGGSCH
T ss_pred HHHHHHHHHHhhCC-EEEEEEeCCCCCccCC-HHHHHHH--CCCCEEEEEECcccCCH
Confidence 34566678899998 7777788877665542 2333444 46899999999999863
No 233
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.27 E-value=0.017 Score=56.49 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-.-|+|+|+.|||||||+++|++.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999975
No 234
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.88 E-value=0.023 Score=55.22 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.++|+|+.|||||||++.|+|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999985
No 235
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.86 E-value=0.022 Score=55.24 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=25.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC--CCcccCCccccce
Q 005389 50 VAVVGSQSSGKSSVLEALVGRD--FLPRGNDICTRRP 84 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~~--~lP~~~~~~Tr~p 84 (699)
|||+|+.||||+||++.|+... -+......+||.|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 8999999999999999998542 1223344455544
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.79 E-value=0.025 Score=53.98 Aligned_cols=23 Identities=13% Similarity=0.484 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.-|+|+|+.|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999985
No 237
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.69 E-value=0.026 Score=55.06 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.++|+|+.|||||||++.|.|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999996
No 238
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.66 E-value=0.042 Score=58.69 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|..|||||||||+|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999999974
No 239
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.51 E-value=0.032 Score=53.47 Aligned_cols=22 Identities=23% Similarity=0.610 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.++++|+.|||||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999986
No 240
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.41 E-value=0.037 Score=55.51 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999999973
No 241
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.27 E-value=0.048 Score=56.74 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-.++++|+.|||||||||+|.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 358999999999999999999985
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.23 E-value=0.034 Score=53.57 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-|+++|+.|||||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999987
No 243
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.19 E-value=0.035 Score=55.12 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-++|+|+.|||||||++.|+|..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999999973
No 244
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.16 E-value=0.04 Score=54.80 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999973
No 245
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.15 E-value=0.044 Score=53.56 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-|+|+|+.|||||||++.|.+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999987
No 246
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.12 E-value=0.046 Score=52.08 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+|+|..|||||||++.|.|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4889999999999999999997
No 247
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.12 E-value=0.037 Score=53.01 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005389 50 VAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~ 70 (699)
|+|+|+.|||||||++.|+|.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999986
No 248
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.05 E-value=0.038 Score=54.57 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.++|+|+.|||||||++.|+|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999996
No 249
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.95 E-value=0.048 Score=53.93 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38899999999999999999973
No 250
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.87 E-value=0.05 Score=54.63 Aligned_cols=23 Identities=52% Similarity=0.625 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999983
No 251
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.85 E-value=0.052 Score=54.68 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-.++++|+.|||||||++.|.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999983
No 252
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.77 E-value=0.052 Score=54.67 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999973
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.77 E-value=0.037 Score=54.00 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+|+|.+|||||||++.|.|.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999986
No 254
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.77 E-value=0.051 Score=55.61 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999999973
No 255
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.71 E-value=0.054 Score=54.05 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|.-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999983
No 256
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.70 E-value=0.054 Score=55.07 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999983
No 257
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.69 E-value=0.053 Score=55.78 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|.-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999973
No 258
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.68 E-value=0.054 Score=55.27 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999973
No 259
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.63 E-value=0.061 Score=57.52 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+|+|++|||||||+++|+|.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4999999999999999999996
No 260
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.59 E-value=0.057 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999983
No 261
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.53 E-value=0.059 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999973
No 262
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.48 E-value=0.06 Score=54.56 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|.-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999983
No 263
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.41 E-value=0.061 Score=54.69 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999983
No 264
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.39 E-value=0.062 Score=54.91 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 48899999999999999999973
No 265
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.38 E-value=0.065 Score=54.21 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.++++|+.|||||||++.|.|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999997
No 266
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.33 E-value=0.12 Score=53.66 Aligned_cols=49 Identities=14% Similarity=0.008 Sum_probs=29.9
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 22 ~~~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
|..+-.++..|.+.+.+.-....-....|+|+|.+|||||||.+.|.+.
T Consensus 6 ~~~~~~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 6 KTVLDYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4444445555544333321111122345889999999999999999775
No 267
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.31 E-value=0.064 Score=54.61 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999999974
No 268
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.30 E-value=0.067 Score=51.13 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
..|.|+|+|..|||||||++.|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3688999999999999999999875
No 269
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.27 E-value=0.058 Score=50.66 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.+||||||++.|.|.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999999973
No 270
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.24 E-value=0.056 Score=55.11 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+|+|+.|||||||+++|+|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 4899999999999999999986
No 271
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.22 E-value=0.069 Score=54.64 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.++|+|+.|||||||++.|.|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999997
No 272
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.21 E-value=0.067 Score=54.85 Aligned_cols=23 Identities=39% Similarity=0.419 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|.-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 273
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.19 E-value=0.07 Score=50.43 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005389 49 QVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G 69 (699)
-++++|..|||||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 478999999999999998754
No 274
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.17 E-value=0.057 Score=57.03 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005389 50 VAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~ 70 (699)
++|+|+.|||||||+++|+|.
T Consensus 174 v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 174 VIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp EEEEESTTSCHHHHHHHGGGG
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 999999999999999999997
No 275
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.13 E-value=0.068 Score=54.21 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999973
No 276
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.10 E-value=0.071 Score=54.49 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999973
No 277
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.10 E-value=0.064 Score=60.16 Aligned_cols=28 Identities=32% Similarity=0.559 Sum_probs=23.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCcccCCc
Q 005389 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~~~lP~~~~~ 79 (699)
|+|+|++||||||+|++|+|. +|...+.
T Consensus 263 i~I~GptGSGKTTlL~aL~~~--i~~~~gi 290 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIMMF--IPPDAKV 290 (511)
T ss_dssp EEEEESTTSSHHHHHHHHGGG--SCTTCCE
T ss_pred EEEECCCCCCHHHHHHHHHhh--CCCCCCE
Confidence 999999999999999999986 3544443
No 278
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.09 E-value=0.056 Score=57.87 Aligned_cols=69 Identities=16% Similarity=0.249 Sum_probs=41.3
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc---------ccchHHHHHHHhhCC----C
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD---------LANSDALQIAGIADP----D 214 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d---------~~~~~~l~l~~~~dp----~ 214 (699)
..+.||||+|- +..+.+...|.++.+++|+++...+.| -.-.++..+...+.. .
T Consensus 201 ~~l~i~Dt~Gq-------------~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 201 VPFKMVDVGGQ-------------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp EEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred eEEEEEeccch-------------hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 57999999993 355677778999998776666544422 111233334433322 3
Q ss_pred CCcEEEeecccccCC
Q 005389 215 GYRTIGIITKLDIMD 229 (699)
Q Consensus 215 g~rti~VlTK~D~~~ 229 (699)
+.++|+|+||+|+..
T Consensus 268 ~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 268 NVSIILFLNKTDLLE 282 (362)
T ss_dssp TSEEEEEEECHHHHH
T ss_pred CCCEEEEEEChhhhh
Confidence 689999999999963
No 279
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=92.06 E-value=0.086 Score=55.89 Aligned_cols=69 Identities=16% Similarity=0.309 Sum_probs=46.7
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCC---------CcccchHHHHHHHhh----CCC
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN---------SDLANSDALQIAGIA----DPD 214 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~---------~d~~~~~~l~l~~~~----dp~ 214 (699)
..+.+|||.| ++..+.+...|.++.+++|+++.-.. ..-.-.+++.+...+ ...
T Consensus 161 v~l~iwDtaG-------------Qe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~ 227 (340)
T 4fid_A 161 IPFHLIDVGG-------------QRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK 227 (340)
T ss_dssp CEEEEEECCS-------------CHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT
T ss_pred eeeccccCCC-------------cccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC
Confidence 5799999999 35788899999999997777764431 111112233333333 224
Q ss_pred CCcEEEeecccccCC
Q 005389 215 GYRTIGIITKLDIMD 229 (699)
Q Consensus 215 g~rti~VlTK~D~~~ 229 (699)
..++++|+||+|+..
T Consensus 228 ~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 228 GAVKLIFLNKMDLFE 242 (340)
T ss_dssp TSEEEEEEECHHHHH
T ss_pred CCeEEEEEECchhhh
Confidence 689999999999974
No 280
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.05 E-value=0.071 Score=54.92 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999973
No 281
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.04 E-value=0.059 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+|+|..|||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999885
No 282
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=91.79 E-value=0.088 Score=55.53 Aligned_cols=69 Identities=12% Similarity=0.208 Sum_probs=46.9
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecC---------CCcccchHHHHHHHhhCC----C
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPA---------NSDLANSDALQIAGIADP----D 214 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a---------~~d~~~~~~l~l~~~~dp----~ 214 (699)
..+.+|||.| ++..+.+...|.++.+++|+++.-. +..-.-.+++.+...+.. .
T Consensus 167 v~l~iwDtgG-------------Qe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~ 233 (327)
T 3ohm_A 167 VIFRMVDVGG-------------QRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 233 (327)
T ss_dssp EEEEEEEECC-------------SHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred eeeEEEEcCC-------------chhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC
Confidence 5789999999 3577888889999999777776321 111112234444444432 3
Q ss_pred CCcEEEeecccccCC
Q 005389 215 GYRTIGIITKLDIMD 229 (699)
Q Consensus 215 g~rti~VlTK~D~~~ 229 (699)
+.++++|+||+|+.+
T Consensus 234 ~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 234 NSSVILFLNKKDLLE 248 (327)
T ss_dssp TCEEEEEEECHHHHH
T ss_pred CceEEEEEECchhhh
Confidence 589999999999974
No 283
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.66 E-value=0.046 Score=52.13 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
+.|+|+|..+||||||++.|+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999986
No 284
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.61 E-value=0.056 Score=53.16 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005389 50 VAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~ 70 (699)
++++|+.|||||||++.|.|.
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999997
No 285
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.55 E-value=0.08 Score=50.94 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+|+|..||||||+++.|.+.
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999987
No 286
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.50 E-value=0.07 Score=55.77 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|||+.|||||||++.|+|.-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58999999999999999999973
No 287
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.50 E-value=0.078 Score=55.36 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.++|+|+.|||||||++.|+|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5899999999999999999986
No 288
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.44 E-value=0.092 Score=53.62 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcc
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~ 75 (699)
.++++|+.|||||||++.|.|.. |.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~--p~ 56 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL--PY 56 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CC
Confidence 57899999999999999999984 64
No 289
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.41 E-value=0.13 Score=53.54 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-.++++|..|||||||||+|+ .
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-S
T ss_pred cEEEEECCCCCCHHHHHHHHH-H
Confidence 358999999999999999999 5
No 290
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.35 E-value=0.078 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.-.+|+|+.+||||||++||.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 36799999999999999999764
No 291
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=91.29 E-value=0.044 Score=58.52 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=45.9
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcc---------cchHHHHHHHhhCC----C
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL---------ANSDALQIAGIADP----D 214 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~---------~~~~~l~l~~~~dp----~ 214 (699)
..+.+|||+|- +..+.+...|.++.+++|+++...+.|. .-.++..+...+.. .
T Consensus 193 ~~l~iwDt~GQ-------------e~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~ 259 (353)
T 1cip_A 193 LHFKMFDVGGQ-------------RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT 259 (353)
T ss_dssp EEEEEEEECCS-------------GGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred eeEEEEeCCCc-------------hhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc
Confidence 57999999993 2456677789999997777765444221 12233444444332 3
Q ss_pred CCcEEEeecccccCC
Q 005389 215 GYRTIGIITKLDIMD 229 (699)
Q Consensus 215 g~rti~VlTK~D~~~ 229 (699)
+.++|+|+||.|+..
T Consensus 260 ~~piiLv~NK~DL~~ 274 (353)
T 1cip_A 260 DTSIILFLNKKDLFE 274 (353)
T ss_dssp TSEEEEEEECHHHHH
T ss_pred CCcEEEEEECcCchh
Confidence 689999999999963
No 292
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.28 E-value=0.085 Score=49.29 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+++|..|||||||.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999875
No 293
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.28 E-value=0.12 Score=50.38 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcccCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP~~~~ 78 (699)
-++|+|+.+||||||++.|+|.-..|.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g 56 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 56 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence 478999999999999999998543344433
No 294
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.11 E-value=0.098 Score=54.22 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58899999999999999999983
No 295
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.09 E-value=0.091 Score=50.06 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 005389 50 VAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G 69 (699)
|+++|..|||||||++.|.+
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 78999999999999999986
No 296
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.00 E-value=0.088 Score=56.23 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-|+|+|++||||||||++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4999999999999999999986
No 297
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.93 E-value=0.076 Score=52.54 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=15.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh-CC
Q 005389 49 QVAVVGSQSSGKSSVLEALV-GR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~-G~ 70 (699)
-|+++|+.|||||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999 87
No 298
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=90.89 E-value=0.44 Score=50.97 Aligned_cols=56 Identities=9% Similarity=-0.006 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCc
Q 005389 172 ARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 172 ~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
+.+++++..|.+..+ ++|+|+|+.... ..+...++++.. +.++++|+||+|+.+..
T Consensus 57 e~f~~~l~~i~~~~~-~il~VvD~~d~~--~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 57 DDFLRILNGIGKSDA-LVVKIVDIFDFN--GSWLPGLHRFVG-NNKVLLVGNKADLIPKS 112 (368)
T ss_dssp HHHHHHHHHHHHSCC-EEEEEEETTSHH--HHCCTTHHHHSS-SSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHHHhccCc-EEEEEEECCCCc--ccHHHHHHHHhC-CCcEEEEEEChhcCCcc
Confidence 477788888888776 777777776422 111122233322 68999999999998653
No 299
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.82 E-value=0.098 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.-|+|+|..|||||||++.|.|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999764
No 300
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=90.75 E-value=0.38 Score=51.48 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCCc
Q 005389 172 ARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 172 ~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
+.+++++..|...++ +|+.|+|+...... -.-.+.+.+. +.++++|+||+|+++..
T Consensus 59 e~f~~~L~~~~~~~~-lil~VvD~~d~~~s-~~~~l~~~l~--~~piilV~NK~DLl~~~ 114 (369)
T 3ec1_A 59 DDFLSMLHRIGESKA-LVVNIVDIFDFNGS-FIPGLPRFAA--DNPILLVGNKADLLPRS 114 (369)
T ss_dssp CHHHHHHHHHHHHCC-EEEEEEETTCSGGG-CCSSHHHHCT--TSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHHhhccCc-EEEEEEECCCCCCc-hhhHHHHHhC--CCCEEEEEEChhcCCCc
Confidence 367777777777776 77777777643321 1112223332 68999999999998653
No 301
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.56 E-value=0.14 Score=51.16 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHh---CCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALV---GRD 71 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~---G~~ 71 (699)
..|+|+|..|||||||++.|. |..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 479999999999999999999 875
No 302
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.52 E-value=0.1 Score=54.60 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=21.8
Q ss_pred CCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005389 45 IELP-QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 45 ~~lP-~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
+.-+ .|+|+|..|||||||++.|.|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 3344 4789999999999999999986
No 303
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.50 E-value=0.11 Score=50.24 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+++|..+||||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999999986
No 304
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.35 E-value=0.13 Score=54.95 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 48999999999999999999974
No 305
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.30 E-value=0.14 Score=54.69 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.||||||||+.|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999984
No 306
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.26 E-value=0.13 Score=54.90 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-++++|+.||||||||+.|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999984
No 307
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.21 E-value=0.3 Score=45.99 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 24 ~l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.....++.+++.+..+... .-.-++++|++|+|||||+.+|.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~---~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 18 SQNRALLTIRVFVHNFNPE---EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHHHHHHSCCGG---GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccc---CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3556677777766655432 1345899999999999999999876
No 308
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.10 E-value=0.15 Score=49.41 Aligned_cols=24 Identities=21% Similarity=0.606 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-.-|+|+|.+|||||||.+.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 345899999999999999999764
No 309
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=90.03 E-value=0.13 Score=48.23 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+++|..||||||+.+.|.+.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5899999999999999998653
No 310
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.01 E-value=0.15 Score=54.50 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999999984
No 311
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.97 E-value=0.17 Score=46.65 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q 005389 48 PQVAVVGSQSSGKSSVLEAL 67 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL 67 (699)
+-|+|+|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 312
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.96 E-value=0.15 Score=54.54 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999984
No 313
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.86 E-value=0.15 Score=54.64 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 48899999999999999999984
No 314
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.86 E-value=0.15 Score=54.78 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999999984
No 315
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.84 E-value=0.13 Score=56.26 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-|+|+|++||||||+|++|+|.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 3899999999999999999986
No 316
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.74 E-value=0.12 Score=54.99 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-.++|+|..|||||||++.|.|.-
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999973
No 317
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.74 E-value=0.22 Score=48.13 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+|+|..+||||||++.|.+.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 318
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.67 E-value=0.14 Score=51.27 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+|+|+.+||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999774
No 319
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.60 E-value=0.17 Score=54.40 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.||||||||+.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999999984
No 320
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.58 E-value=0.17 Score=46.84 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=18.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005389 48 PQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~ 68 (699)
.-.+|+|+.++||||+|+||.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999985
No 321
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=89.55 E-value=0.15 Score=49.29 Aligned_cols=23 Identities=35% Similarity=0.265 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
..|+|+|..|||||||.+.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999876
No 322
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.55 E-value=0.13 Score=55.08 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+|+|++||||||++++|+|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999986
No 323
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=89.54 E-value=0.13 Score=55.78 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=45.1
Q ss_pred cceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCc---------ccchHHHHHHHhhC----CC
Q 005389 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD---------LANSDALQIAGIAD----PD 214 (699)
Q Consensus 148 ~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d---------~~~~~~l~l~~~~d----p~ 214 (699)
..+.||||.|- +..+.+...|.++++++|+++.-.+-| -.-.++..+...+. ..
T Consensus 217 v~l~iwDtaGQ-------------e~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 217 VNFHMFDVGGQ-------------RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp EEEEEEEECCS-------------GGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred ccceecccchh-------------hhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 57999999993 345677788999999777766544311 11123333444332 23
Q ss_pred CCcEEEeecccccCC
Q 005389 215 GYRTIGIITKLDIMD 229 (699)
Q Consensus 215 g~rti~VlTK~D~~~ 229 (699)
..++|+|+||+|+..
T Consensus 284 ~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 284 TISVILFLNKQDLLA 298 (402)
T ss_dssp SCCEEEEEECHHHHH
T ss_pred CCeEEEEEEChhhhh
Confidence 578999999999853
No 324
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.46 E-value=0.17 Score=49.57 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
..|+++|..||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 325
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.40 E-value=0.21 Score=46.26 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G 69 (699)
..|+|+|..||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999963
No 326
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.19 E-value=0.14 Score=54.48 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.||||||||+.|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 48899999999999999999984
No 327
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.92 E-value=0.15 Score=51.30 Aligned_cols=25 Identities=28% Similarity=0.524 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHh---CCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALV---GRDF 72 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~---G~~~ 72 (699)
..|+|+|..|||||||++.|. |..+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 469999999999999999999 8753
No 328
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.82 E-value=0.26 Score=46.81 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|.|+|+|..|||||||++.|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999864
No 329
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.77 E-value=0.2 Score=54.18 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.||||||||+.|.|..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999999973
No 330
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=88.64 E-value=0.23 Score=47.87 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005389 49 QVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G 69 (699)
.|+++|..||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 331
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.62 E-value=0.17 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+|+|..|||||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999985
No 332
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=88.54 E-value=0.23 Score=47.95 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=22.3
Q ss_pred CCCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005389 44 TIELP-QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 44 ~~~lP-~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.+.-+ .|+|+|.++||||||.+.|.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34444 4789999999999999999886
No 333
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=88.48 E-value=0.19 Score=48.29 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005389 49 QVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G 69 (699)
.|+|+|..||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 334
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.46 E-value=0.17 Score=55.90 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.-+.++|+|+.|||||||++.|+|..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45789999999999999999999974
No 335
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.41 E-value=0.29 Score=50.09 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=25.6
Q ss_pred HHHHHhCCCCCCCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005389 34 DIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 34 d~~~~lg~~~~~~lP-~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
++++.+|. ..| -|+++|++|+|||||+++|.|.
T Consensus 34 ~~l~~~~l----~~~~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 34 DQFKALGL----VTPAGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHHTTC----CCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHHcCC----CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34555663 233 2999999999999999999986
No 336
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.40 E-value=0.14 Score=54.61 Aligned_cols=23 Identities=22% Similarity=0.624 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.||||||||+.|.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999974
No 337
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.39 E-value=1.6 Score=47.64 Aligned_cols=33 Identities=30% Similarity=0.697 Sum_probs=26.0
Q ss_pred HHHHHhCCCCCCCCCE-EEEEcCCCCcHHHHHHHHhCC
Q 005389 34 DIFAQLGSQSTIELPQ-VAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 34 d~~~~lg~~~~~~lP~-IvVvG~~ssGKSSLLnaL~G~ 70 (699)
+.+..+| +..|+ |.+.|++|+|||++..||.+.
T Consensus 196 ~~~~~~g----~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 196 DLYEQIG----IDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp HHHHHHC----CCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHHHhCC----CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4556677 34554 999999999999999999754
No 338
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.24 E-value=0.13 Score=53.88 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.|-++|+|..|||||||||.|+|..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 5779999999999999999999863
No 339
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.17 E-value=0.24 Score=48.92 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005389 49 QVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G 69 (699)
-++|+|+.|||||||+..|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 488999999999999999984
No 340
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.15 E-value=1.8 Score=47.32 Aligned_cols=33 Identities=27% Similarity=0.549 Sum_probs=26.1
Q ss_pred HHHHHhCCCCCCCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005389 34 DIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 34 d~~~~lg~~~~~~lP-~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
+.|..+|+ ..| -|.+.|++|+|||+|..||.+.
T Consensus 205 ~~f~~~g~----~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 205 EIFQRVGI----KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp HHHHHHCC----CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHhCCC----CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45666773 444 4899999999999999999754
No 341
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=88.06 E-value=0.21 Score=48.03 Aligned_cols=23 Identities=43% Similarity=0.521 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
..|+|+|..|||||||.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999643
No 342
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.92 E-value=0.3 Score=46.61 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+|+|..||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999653
No 343
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=87.87 E-value=0.25 Score=52.86 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~ 68 (699)
..-.+|+|+.||||||||++|+
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3457899999999999999987
No 344
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=87.84 E-value=0.16 Score=46.90 Aligned_cols=25 Identities=32% Similarity=0.419 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.-.-++++|+.|+|||+|+++|.|.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4456999999999999999999986
No 345
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.75 E-value=0.18 Score=49.87 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-|+|+|..||||||+++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999886
No 346
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=87.71 E-value=0.1 Score=55.59 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=43.4
Q ss_pred ccceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCC---------CcccchHHHHHHHhhC----C
Q 005389 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN---------SDLANSDALQIAGIAD----P 213 (699)
Q Consensus 147 ~~~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~---------~d~~~~~~l~l~~~~d----p 213 (699)
...+.||||+|- +..+.+...|.++++++|+++.-.. ..-.-.++..+...+. .
T Consensus 182 ~v~l~iwDtaGQ-------------e~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQ-------------RNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCS-------------TTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCc-------------hhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 357999999993 2455677789999997777664320 1111122333333332 2
Q ss_pred CCCcEEEeecccccCC
Q 005389 214 DGYRTIGIITKLDIMD 229 (699)
Q Consensus 214 ~g~rti~VlTK~D~~~ 229 (699)
...++|+|+||+|+.+
T Consensus 249 ~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFE 264 (354)
T ss_dssp SSCEEEEEEECHHHHH
T ss_pred CCCeEEEEEECcchhh
Confidence 3689999999999964
No 347
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=87.70 E-value=0.28 Score=45.73 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005389 49 QVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G 69 (699)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 488999999999999999975
No 348
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.26 E-value=0.3 Score=45.69 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-|+|+|.+||||||+.++|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999999753
No 349
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=87.19 E-value=0.15 Score=52.99 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=39.3
Q ss_pred ceEEEeCCCCCCCCCCCCchHHHHHHHHHHHHHhcCCCeeEEEEecCCCcc-cchHHHHHHHhhCCCCCcEEEeeccccc
Q 005389 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL-ANSDALQIAGIADPDGYRTIGIITKLDI 227 (699)
Q Consensus 149 ~LtLVDlPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~-~~~~~l~l~~~~dp~g~rti~VlTK~D~ 227 (699)
.+.+||| .. .++.+...|+++.+.+|+ |.++.... .....-++...+...+.++++|+||+|+
T Consensus 64 ~~~iwD~--qe-------------r~~~l~~~~~~~ad~vil-V~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL 127 (301)
T 1u0l_A 64 SGVIENV--LH-------------RKNLLTKPHVANVDQVIL-VVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDL 127 (301)
T ss_dssp SEEEEEE--CC-------------CSCEETTTTEESCCEEEE-EECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGG
T ss_pred eEEEEEE--cc-------------ccceeeccccccCCEEEE-EEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHc
Confidence 6899998 11 222344469999995555 45554332 2222122233333347899999999999
Q ss_pred CCC
Q 005389 228 MDR 230 (699)
Q Consensus 228 ~~~ 230 (699)
.+.
T Consensus 128 ~~~ 130 (301)
T 1u0l_A 128 YDE 130 (301)
T ss_dssp CCH
T ss_pred CCc
Confidence 753
No 350
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=87.15 E-value=2.5 Score=50.61 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 005389 49 QVAVVGSQSSGKSSVLEAL 67 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL 67 (699)
-++|+|+.++||||+|+.+
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999999999
No 351
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.74 E-value=0.33 Score=54.70 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|.-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 352
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.72 E-value=3.2 Score=45.26 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=26.3
Q ss_pred HHHHHhCCCCCCCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005389 34 DIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 34 d~~~~lg~~~~~~lP-~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
+.|..+|+ ..| -|.+.|++|+|||++..||.+.
T Consensus 205 e~f~~~g~----~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 205 DKFKDMGI----RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp HHHHHHCC----CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHhCCC----CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 45667773 444 4999999999999999999764
No 353
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=86.59 E-value=0.33 Score=45.74 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005389 49 QVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G 69 (699)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 354
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=86.57 E-value=0.34 Score=45.64 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005389 49 QVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G 69 (699)
.|+|+|.+||||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 355
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=86.49 E-value=0.4 Score=46.10 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G 69 (699)
..|+++|.+||||||+...|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 356
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.45 E-value=0.28 Score=51.49 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-|+|+|.+|||||||++.|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999765
No 357
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=86.44 E-value=0.44 Score=47.57 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005389 50 VAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~ 70 (699)
|+++|++|+|||||+++|.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999875
No 358
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=86.30 E-value=0.42 Score=44.99 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~ 68 (699)
.+.|+++|.+||||||+...|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999995
No 359
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=86.19 E-value=0.34 Score=54.64 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-++++|+.|||||||++.|.|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999973
No 360
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=85.95 E-value=0.44 Score=45.24 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.+.|+++|.++|||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999999643
No 361
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.71 E-value=0.52 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|..|||||||+++|.|..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 362
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=85.70 E-value=0.38 Score=45.47 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 005389 49 QVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~ 68 (699)
-|+|+|.+||||||+.+.|.
T Consensus 7 ~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999985
No 363
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=85.67 E-value=0.41 Score=46.53 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005389 48 PQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~ 68 (699)
.-.+|+|+.++||||+++||.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 457899999999999999984
No 364
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.60 E-value=0.38 Score=54.99 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.||||||||+.|.|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999973
No 365
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=85.59 E-value=0.37 Score=54.74 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|.-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 58999999999999999999973
No 366
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=85.55 E-value=0.39 Score=54.56 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|.-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999973
No 367
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=85.52 E-value=0.33 Score=53.89 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-.++|+|+.||||||||++|.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 35789999999999999999996
No 368
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=85.39 E-value=0.45 Score=44.56 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G 69 (699)
+.|+|+|.+||||||+...|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3599999999999999999964
No 369
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=85.33 E-value=0.44 Score=44.82 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 005389 49 QVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~ 68 (699)
.|+++|..+|||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999996
No 370
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=85.22 E-value=0.43 Score=44.98 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005389 48 PQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~ 68 (699)
|.|+++|.+||||||+-..|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 569999999999999999884
No 371
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=85.19 E-value=0.37 Score=46.78 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-++|+|+.|+|||||+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999999865
No 372
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=85.18 E-value=0.54 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|+.|||||||++.|.|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999973
No 373
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=85.17 E-value=0.44 Score=45.56 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
..|+|+|..||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999999754
No 374
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.14 E-value=4.3 Score=43.78 Aligned_cols=33 Identities=27% Similarity=0.528 Sum_probs=26.2
Q ss_pred HHHHHhCCCCCCCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005389 34 DIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 34 d~~~~lg~~~~~~lP-~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
+.|..+|+ ..| -|.+.|++|+|||+|..|+.+.
T Consensus 172 e~f~~~gi----~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 172 ELFESLGI----AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp HHHHHHTC----CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HHHHhCCC----CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 45667774 344 4999999999999999999764
No 375
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=85.02 E-value=0.39 Score=45.16 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+++|..+|||||+.+.|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999764
No 376
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=85.01 E-value=0.44 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.||||||||+.|.|.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999999973
No 377
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=84.99 E-value=0.48 Score=45.89 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 005389 49 QVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~ 68 (699)
.|+|+|.++|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999994
No 378
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=84.92 E-value=0.47 Score=45.47 Aligned_cols=21 Identities=38% Similarity=0.367 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005389 49 QVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G 69 (699)
.|+|.|..||||||+.+.|..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 379
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=84.83 E-value=0.24 Score=47.85 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-|+|+|..||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
No 380
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=84.76 E-value=0.48 Score=44.49 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~ 68 (699)
.+.|+++|.++|||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4569999999999999999996
No 381
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=84.72 E-value=0.6 Score=47.40 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005389 50 VAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~ 70 (699)
|+++|++|+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999876
No 382
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=84.68 E-value=0.48 Score=44.91 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005389 49 QVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G 69 (699)
-|+|.|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999964
No 383
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=84.63 E-value=0.37 Score=55.03 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.+++||+.|||||||++.|.|.-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999999973
No 384
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=84.58 E-value=0.44 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|..|||||||+++|.|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999973
No 385
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=84.47 E-value=0.36 Score=55.06 Aligned_cols=23 Identities=43% Similarity=0.517 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|.-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999999973
No 386
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=84.39 E-value=0.53 Score=44.56 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005389 48 PQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~ 68 (699)
+.|+++|..+|||||+.+.|.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999985
No 387
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=84.33 E-value=0.55 Score=45.50 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005389 49 QVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G 69 (699)
.|+|+|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999953
No 388
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=84.10 E-value=0.33 Score=55.16 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.+++||+.|||||||++.|.|.-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999973
No 389
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=84.04 E-value=0.38 Score=54.80 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.+++||+.|||||||++.|.|.-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999973
No 390
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=83.98 E-value=0.55 Score=43.54 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005389 48 PQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~ 68 (699)
+.|+|+|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 459999999999999999985
No 391
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=83.97 E-value=0.42 Score=49.03 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-++|+|++|+|||||+..|.|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4889999999999999999986
No 392
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=83.95 E-value=0.5 Score=45.41 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G 69 (699)
..|+|.|..||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999953
No 393
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=83.83 E-value=0.55 Score=44.28 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005389 49 QVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G 69 (699)
.|++.|..||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999953
No 394
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=83.59 E-value=0.53 Score=45.29 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G 69 (699)
..|+|+|..||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999963
No 395
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=83.52 E-value=0.63 Score=42.95 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 005389 49 QVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~ 68 (699)
.|+|.|..+|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999984
No 396
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=83.50 E-value=0.6 Score=44.15 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.-|+++|..||||||+.+.|.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 35889999999999999999764
No 397
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=83.33 E-value=0.61 Score=43.92 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 005389 49 QVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~ 68 (699)
.|+|+|.++|||||+.+.|.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999885
No 398
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=83.16 E-value=0.66 Score=43.99 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G 69 (699)
+.|+|+|.++|||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999853
No 399
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=83.07 E-value=0.12 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 005389 50 VAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
++|+|+.+|||||||++|.|..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4678999999999999999873
No 400
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=83.04 E-value=2.3 Score=50.83 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-++|+|+.++||||+|+.+.+.
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 5889999999999999998643
No 401
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=82.91 E-value=0.61 Score=45.30 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005389 49 QVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G 69 (699)
.|+|+|..+|||||+.+.|..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 402
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.88 E-value=4.8 Score=44.18 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=26.2
Q ss_pred HHHHHhCCCCCCCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005389 34 DIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 34 d~~~~lg~~~~~~lP-~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
+.|..+|+ ..| -|.+.|++|+|||+|..||.+.
T Consensus 233 e~f~~~Gi----~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 233 ERFATLGI----DPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp HHHHHHTC----CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHHHHCCC----CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 45667773 444 4888999999999999999764
No 403
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=82.80 E-value=0.61 Score=49.10 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=18.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005389 48 PQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~ 68 (699)
.-.+|+|+.+|||||+++||.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 346899999999999999984
No 404
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=82.59 E-value=0.61 Score=53.27 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 005389 50 VAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
++|+|..|||||||++.|.|..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999999984
No 405
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=82.45 E-value=0.71 Score=45.23 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G 69 (699)
..|+|+|..||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999963
No 406
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=82.30 E-value=1.9 Score=39.05 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 28 ~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.+.++.+.+..+.. .+.| |.+.|++|+|||++..+|...
T Consensus 9 ~~~~~~~~~~~~a~---~~~~-vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 9 WINQYRRRLQQLSE---TDIA-VWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHHHHHTT---CCSC-EEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC---CCCC-EEEECCCCCCHHHHHHHHHHh
Confidence 34445544444432 2334 899999999999999999754
No 407
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=82.29 E-value=0.64 Score=44.25 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
..|+|+|..+|||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 35899999999999999999754
No 408
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=82.29 E-value=0.56 Score=49.77 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.++|||||++.|+|..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999973
No 409
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.10 E-value=5.6 Score=43.27 Aligned_cols=33 Identities=24% Similarity=0.618 Sum_probs=25.8
Q ss_pred HHHHHhCCCCCCCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005389 34 DIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 34 d~~~~lg~~~~~~lP-~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
+.+..+| +..| -|.+.|++|+|||+|..||.+.
T Consensus 206 e~f~~~G----i~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 206 ELYEEMG----IKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp HHHHHHT----CCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred HHHHhCC----CCCCCCCceECCCCchHHHHHHHHHHH
Confidence 3456677 3444 4999999999999999999764
No 410
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.06 E-value=1.6 Score=40.22 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.+-|+++|++|+|||+++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999999754
No 411
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=82.04 E-value=0.67 Score=43.53 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005389 48 PQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~ 68 (699)
+.|+|+|..+|||||+.+.|.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999985
No 412
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=81.93 E-value=0.6 Score=47.10 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G 69 (699)
-..|+++|..+|||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999964
No 413
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=81.75 E-value=0.25 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.305 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-.++++|+.||||||||++|.+.
T Consensus 61 G~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 61 GFCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999765
No 414
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=81.75 E-value=1 Score=47.34 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|-++|.|+.|+|||||++++.+.
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999865
No 415
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=81.74 E-value=0.66 Score=49.47 Aligned_cols=21 Identities=48% Similarity=0.727 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005389 48 PQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~ 68 (699)
.-.+++|+.||||||+|+||.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999984
No 416
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=81.71 E-value=0.77 Score=44.56 Aligned_cols=20 Identities=15% Similarity=0.464 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 005389 49 QVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~ 68 (699)
.|+|+|.++|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999985
No 417
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=81.67 E-value=0.82 Score=43.67 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G 69 (699)
|.|+|.|..+|||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999854
No 418
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=81.45 E-value=0.76 Score=44.00 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 005389 49 QVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~ 68 (699)
.|+|+|.++|||||+.+.|.
T Consensus 22 ~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 419
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=81.32 E-value=1.5 Score=43.00 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=30.8
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCCCCC---EEEEEcCCCCcHHHHHHHHhC
Q 005389 22 GGSVIPLVNKLQDIFAQLGSQSTIELP---QVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 22 ~~~l~~~~~~L~d~~~~lg~~~~~~lP---~IvVvG~~ssGKSSLLnaL~G 69 (699)
+-..+..+..|...++ | +| -|++.|++|+|||++..+|..
T Consensus 38 ~~~~~~f~~~l~~~~~--~------iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 38 QIEFITFLGALKSFLK--G------TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp TCCHHHHHHHHHHHHH--T------CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh--c------CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 3456777788887665 2 45 699999999999988888754
No 420
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=81.26 E-value=0.57 Score=43.85 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=14.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005389 48 PQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~ 68 (699)
..|+|+|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999985
No 421
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=81.26 E-value=0.67 Score=44.68 Aligned_cols=21 Identities=24% Similarity=0.169 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005389 49 QVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G 69 (699)
-++|+|++++|||||+..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988
No 422
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=81.16 E-value=0.82 Score=43.72 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G 69 (699)
..|+|+|..+|||||+.+.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999863
No 423
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=81.13 E-value=0.79 Score=46.09 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-|+|+|.++||||||...|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4899999999999999999643
No 424
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.13 E-value=0.57 Score=48.91 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.-.+++|+.+|||||||+||...
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHHT
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999743
No 425
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=81.12 E-value=0.64 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.-.+++|+.++||||+|++|.+.
T Consensus 27 g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHh
Confidence 35789999999999999999753
No 426
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=81.10 E-value=0.64 Score=50.95 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.++|||||++.|.|..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999999973
No 427
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=81.09 E-value=0.65 Score=49.87 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-|+++|++|+|||||+++|.|.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999874
No 428
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=81.08 E-value=0.67 Score=47.66 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005389 24 SVIPLVNKLQDIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 24 ~l~~~~~~L~d~~~~lg~~~~~~lP-~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
++..+++++-.. .++......-| -|+++|.+||||||+...|...
T Consensus 11 ~~~~~~~~~~~~--~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 11 QFENRLNDNLEE--LIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHHH--HHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhccccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344455544432 23322223334 4678899999999999999643
No 429
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=81.02 E-value=0.92 Score=44.14 Aligned_cols=22 Identities=18% Similarity=0.361 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G 69 (699)
..|+|+|.++|||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999853
No 430
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=81.02 E-value=0.68 Score=45.41 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCc
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~~lP 74 (699)
-++|+|++++|||||+..|++.-.+|
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~ 51 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLP 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCc
Confidence 47899999999999999999853333
No 431
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=81.01 E-value=0.78 Score=44.73 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005389 48 PQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~ 68 (699)
..|+|+|.++|||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 359999999999999999985
No 432
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=81.00 E-value=0.64 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
..++|+|+.|+||||||++|.+.-
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 357999999999999999998763
No 433
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=80.89 E-value=0.75 Score=46.36 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G 69 (699)
+-|+++|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 434
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=80.84 E-value=0.71 Score=48.41 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
..-++++|++|+|||||+++|.|.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 345899999999999999999875
No 435
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=80.53 E-value=0.73 Score=44.64 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.-|+|+|..||||||+.+.|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999764
No 436
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=80.47 E-value=1.7 Score=41.12 Aligned_cols=38 Identities=18% Similarity=0.412 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 27 PLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 27 ~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
..+..|.+.+..- ..+.+++.|+.|+|||+++.++...
T Consensus 24 ~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 24 EVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp HHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3556666655421 2344999999999999999999653
No 437
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=80.47 E-value=1 Score=46.53 Aligned_cols=53 Identities=9% Similarity=0.120 Sum_probs=33.2
Q ss_pred HHHHHhcCCCeeEEEEecCCCc-ccchHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 177 MIMSYIKQPSCLILAVTPANSD-LANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 177 lv~~yi~~~~~iIL~V~~a~~d-~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
+...|+++.| .+++|+++... ......-+++..+...+.+.++|+||+|+.++
T Consensus 72 l~r~~~~naD-~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 72 LIRPKVANVD-RVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp EETTEEESCC-EEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred HhHHHHHhcC-EEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCc
Confidence 3345899998 55556666543 33322223333333357899999999999864
No 438
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=79.61 E-value=0.62 Score=55.96 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++|+|..||||||||+.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 439
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=79.46 E-value=1 Score=41.73 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~ 68 (699)
.--|+|.|..+|||||+...|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 3458999999999999999984
No 440
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=79.32 E-value=1.1 Score=43.99 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 005389 49 QVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~ 68 (699)
.|+|+|.++|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999985
No 441
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=79.10 E-value=0.62 Score=58.18 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+|||++|||||||++.|.|.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999999986
No 442
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=79.06 E-value=0.87 Score=56.89 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.++|||+.|||||||++.|+|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 6999999999999999999997
No 443
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=78.77 E-value=1.1 Score=43.30 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHh
Q 005389 47 LPQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~ 68 (699)
-..|+++|..+|||||+.+.|.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999985
No 444
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=78.48 E-value=2 Score=44.73 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=33.6
Q ss_pred HhcCCCeeEEEEecCCC-cccchHHHHHHHhhCCCCCcEEEeecccccCCCc
Q 005389 181 YIKQPSCLILAVTPANS-DLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (699)
Q Consensus 181 yi~~~~~iIL~V~~a~~-d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~~ 231 (699)
.+.+.| .|+.|+++.. ++.....-+++..+...+.+.++|+||+|+.++.
T Consensus 83 ~~anvD-~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 83 PICNVD-QAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TEECCC-EEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred HHHhCC-EEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchh
Confidence 577887 6666677764 4443332344444445689999999999999763
No 445
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=78.35 E-value=1.2 Score=44.42 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G 69 (699)
..|+|+|.++|||||+...|..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999963
No 446
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=78.30 E-value=1.1 Score=44.30 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|++.|..+|||||+++.|...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999765
No 447
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=77.82 E-value=1.3 Score=43.18 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005389 48 PQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~ 68 (699)
..|+|+|.++|||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999984
No 448
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=77.81 E-value=1.3 Score=43.55 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G 69 (699)
..|+|+|.++|||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999953
No 449
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.68 E-value=0.91 Score=47.45 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
..|.++++|+.|+||||++.+|.|.
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4566999999999999999999884
No 450
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=77.60 E-value=0.94 Score=45.98 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005389 49 QVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G 69 (699)
-++|+|+.|+|||||+..|++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999986
No 451
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=77.34 E-value=0.78 Score=45.97 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=21.2
Q ss_pred CCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005389 45 IELP-QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 45 ~~lP-~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
..-| .|+++|.+||||||+...|...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4444 4788999999999999999754
No 452
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=77.30 E-value=2.5 Score=43.03 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=24.7
Q ss_pred HHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 37 AQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 37 ~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
...|+...-...-|++.|++|+|||++..+|...
T Consensus 57 ~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 57 QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3455543334446999999999999999877543
No 453
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=77.25 E-value=1.1 Score=49.96 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G 69 (699)
.|.++|+|.++||||++|++|+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 58899999999999999999975
No 454
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=76.73 E-value=3.7 Score=38.93 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 25 VIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 25 l~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
...++..+.+.+...... ....-|++.|++|+|||+|+.+|...
T Consensus 34 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPG--KKMKGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp HHHHHHHHHHHHHHCCSS--CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhc--cCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344666666665544311 12256999999999999999999754
No 455
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=76.55 E-value=1.5 Score=45.77 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
+-|+|+|+++||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 45889999999999999999744
No 456
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=76.36 E-value=1.1 Score=55.93 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.+++||+.|||||||++.|.|.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999997
No 457
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=76.32 E-value=1.1 Score=44.57 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-|+++|++|+|||+++.+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999999764
No 458
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=76.25 E-value=1.3 Score=44.14 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G 69 (699)
..|+|.|.++|||||+-+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998854
No 459
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=76.21 E-value=1.3 Score=44.96 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCeeEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccCCC
Q 005389 176 TMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (699)
Q Consensus 176 ~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~dp~g~rti~VlTK~D~~~~ 230 (699)
..+...+.+.| +|+.|++|......... .+. .+ +++.++|+||+|+.+.
T Consensus 13 ~~~~~~l~~~D-~vl~VvDar~P~~~~~~-~l~-ll---~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 13 RQIKDLLRLVN-TVVEVRDARAPFATSAY-GVD-FS---RKETIILLNKVDIADE 61 (262)
T ss_dssp HHHHHHHTTCS-EEEEEEETTSTTTTSCT-TSC-CT---TSEEEEEEECGGGSCH
T ss_pred HHHHHHHhhCC-EEEEEeeCCCCCcCcCh-HHH-hc---CCCcEEEEECccCCCH
Confidence 45567888998 77777788766544321 111 12 7999999999999864
No 460
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.03 E-value=2.3 Score=44.31 Aligned_cols=38 Identities=24% Similarity=0.531 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 27 PLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 27 ~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.+++.|...+.. | .+|.+++.|++|+||||++.+|.+.
T Consensus 32 ~~~~~L~~~i~~-g-----~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 32 EVITTVRKFVDE-G-----KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHHHHHT-T-----CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-C-----CCceEEEECCCCCCHHHHHHHHHHH
Confidence 355666654432 2 3566999999999999999999876
No 461
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=76.00 E-value=1.5 Score=43.63 Aligned_cols=21 Identities=48% Similarity=0.504 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005389 48 PQVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~ 68 (699)
..|+|+|.++|||||+.+.|.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999997
No 462
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=75.82 E-value=1.5 Score=43.26 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G 69 (699)
...|+|+|..+|||||+.+.|.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44699999999999999999975
No 463
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=75.63 E-value=1.3 Score=45.23 Aligned_cols=20 Identities=40% Similarity=0.501 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 005389 49 QVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~ 68 (699)
.|+|+|..+|||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999996
No 464
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=75.61 E-value=1.4 Score=44.92 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005389 49 QVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G 69 (699)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999975
No 465
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=75.51 E-value=1.7 Score=42.16 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 26 IPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 26 ~~~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-.++..|...... + ..+-|++.|++|+|||+++.+|...
T Consensus 37 ~~~~~~l~~~~~~-~-----~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 37 DELIGALKSAASG-D-----GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp HHHHHHHHHHHHT-C-----SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-C-----CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3455556554331 1 3467999999999999999999754
No 466
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=75.44 E-value=3.2 Score=44.08 Aligned_cols=25 Identities=40% Similarity=0.395 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
..+.|+++|.+|+||||+..+|.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999998764
No 467
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=75.37 E-value=1.2 Score=53.49 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.++++|+.|||||||++.|.|..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999543
No 468
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=75.37 E-value=0.84 Score=51.52 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+++|..|||||||+++|.|.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 4789999999999999999886
No 469
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=75.27 E-value=2.2 Score=44.98 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
+-|+|+|+++||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999764
No 470
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=74.50 E-value=3.7 Score=40.54 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
+-|++.|++|+|||++..+|...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999653
No 471
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=74.47 E-value=1.4 Score=40.63 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.+-|+++|++|+|||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998654
No 472
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=73.36 E-value=1.1 Score=51.89 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 005389 49 QVAVVGSQSSGKSSVLEALV 68 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~ 68 (699)
.++|+|+.|||||||++.|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 48999999999999998765
No 473
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=72.69 E-value=3.1 Score=39.38 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=15.6
Q ss_pred EEEEE-cCCCCcHHHHHHHHh
Q 005389 49 QVAVV-GSQSSGKSSVLEALV 68 (699)
Q Consensus 49 ~IvVv-G~~ssGKSSLLnaL~ 68 (699)
.|+|+ +..|+||||+.-.|.
T Consensus 3 vi~v~s~kgG~GKTt~a~~la 23 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIA 23 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCccHHHHHHHHH
Confidence 46666 678899999987774
No 474
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=72.52 E-value=1.9 Score=42.06 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.-|+|+|++++|||+|...|..+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999866
No 475
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=72.50 E-value=1.7 Score=53.99 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
.+++||..|||||||++.|.|..
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999999973
No 476
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=72.01 E-value=4.1 Score=41.84 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 28 ~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.+++|.+.+.. | +-++|.|..++|||||++.+...
T Consensus 20 el~~L~~~l~~-~-------~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 20 ESRKLEESLEN-Y-------PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHHHHH-C-------SEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-C-------CeEEEECCCcCCHHHHHHHHHHH
Confidence 44555555443 2 57999999999999999999754
No 477
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=71.90 E-value=28 Score=35.99 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=20.0
Q ss_pred CCCE-EEEEcCCCCcHHHHHHHHhC
Q 005389 46 ELPQ-VAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 46 ~lP~-IvVvG~~ssGKSSLLnaL~G 69 (699)
.+|. +++.|+.|+|||++..++..
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHH
Confidence 3454 88999999999999998864
No 478
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=71.88 E-value=2.3 Score=41.45 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+++|+++|||+|.-..|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988643
No 479
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=71.49 E-value=2.2 Score=40.94 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 28 ~~~~L~d~~~~lg~~~~~~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.++.|...+.. +. .-+-++|.|+.|+|||+++.++...
T Consensus 31 ~~~~l~~~l~~-~~----~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 31 VLTALANGLSL-GR----IHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp HHHHHHHHHHH-TC----CCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CC----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45556655543 21 1135889999999999999999643
No 480
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=71.46 E-value=2.8 Score=47.03 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=23.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005389 44 TIELPQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 44 ~~~lP~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.+..+-++++|++|+|||||+.+|.+.
T Consensus 105 ~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 105 SLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp SCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 346678999999999999999999765
No 481
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=71.33 E-value=2 Score=45.83 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCC
Q 005389 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 46 ~lP~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
..+-++|+|.++||||++++.|++.-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998763
No 482
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=71.20 E-value=2.6 Score=43.20 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-|++.|++|+|||+|..+|.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 4889999999999999999865
No 483
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=70.62 E-value=2.1 Score=42.18 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-|+|.|..||||||+++.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999744
No 484
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=70.61 E-value=1.7 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGRD 71 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~~ 71 (699)
-+.|+|++|+|||||+..|++.-
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999874
No 485
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=70.44 E-value=2.2 Score=44.93 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-|+|+|.++||||||...|...
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 6899999999999999999754
No 486
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=70.39 E-value=4.1 Score=40.96 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.-|++.|++|+|||+|+.+|.+.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45999999999999999999754
No 487
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=70.14 E-value=2.1 Score=46.29 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G 69 (699)
.-|+++|.++|||||+.+.|..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999964
No 488
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=70.12 E-value=2.2 Score=48.15 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhC
Q 005389 47 LPQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 47 lP~IvVvG~~ssGKSSLLnaL~G 69 (699)
.|.++|+|.++||||++|++|+-
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999999865
No 489
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=69.52 E-value=1.5 Score=44.05 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
..|+|.|..||||||+.+.|...
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998654
No 490
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=69.49 E-value=4.1 Score=41.69 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=20.5
Q ss_pred CCCCCEEE-EEcCCCCcHHHHHHHHhC
Q 005389 44 TIELPQVA-VVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 44 ~~~lP~Iv-VvG~~ssGKSSLLnaL~G 69 (699)
....|..+ +.|++|+|||+|..+|..
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45666655 559999999999999964
No 491
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=69.48 E-value=2.4 Score=41.45 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005389 49 QVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G 69 (699)
-++|+|++++|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999777653
No 492
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=69.35 E-value=1.4 Score=45.31 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=16.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVG 69 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G 69 (699)
+-|+|.|..+||||||.+.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 493
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=69.23 E-value=2.7 Score=37.89 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005389 50 VAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~ 70 (699)
|.+.|++|+|||++..+|...
T Consensus 30 vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCT
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 899999999999999998654
No 494
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=68.76 E-value=2.7 Score=41.32 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=20.7
Q ss_pred CCCCCEE-EEEcCCCCcHHHHHHHHhCC
Q 005389 44 TIELPQV-AVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 44 ~~~lP~I-vVvG~~ssGKSSLLnaL~G~ 70 (699)
.+.-|+| +|+|+++|||+|.-..|...
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4555665 56899999999999888643
No 495
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=68.52 E-value=5.5 Score=39.58 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005389 50 VAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 50 IvVvG~~ssGKSSLLnaL~G~ 70 (699)
|++.|++|+|||+|..+|.+.
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999999753
No 496
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=68.03 E-value=4.9 Score=44.39 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-|+++|++|+|||+|+.+|.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999874
No 497
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=67.93 E-value=2.1 Score=47.86 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHH--HhC
Q 005389 50 VAVVGSQSSGKSSVLEA--LVG 69 (699)
Q Consensus 50 IvVvG~~ssGKSSLLna--L~G 69 (699)
++|+|+.|||||||++. +.|
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~G 63 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNG 63 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
No 498
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=67.83 E-value=4.8 Score=44.70 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
-|+++|++|+|||+|+++|.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999876
No 499
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=67.78 E-value=2.7 Score=43.82 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005389 48 PQVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 48 P~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
+-|+|+|+++||||+|...|...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 35788999999999999999643
No 500
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=67.74 E-value=2.8 Score=43.93 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005389 49 QVAVVGSQSSGKSSVLEALVGR 70 (699)
Q Consensus 49 ~IvVvG~~ssGKSSLLnaL~G~ 70 (699)
.|+|+|.++||||||-..|...
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
Done!