RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 005389
(699 letters)
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial
fission, GT stalk, PH, BSE, membrane fission; HET: 1PE;
3.10A {Rattus norvegicus} PDB: 3snh_A
Length = 772
Score = 633 bits (1633), Expect = 0.0
Identities = 271/717 (37%), Positives = 397/717 (55%), Gaps = 37/717 (5%)
Query: 1 MADEPATNTTAAQSQPSAVPLG----GSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQ 56
M + ++ P +G +IPLVN+LQD F+ +G + ++LPQ+AVVG Q
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQ 60
Query: 57 SSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIR 116
S+GKSSVLE VGRDFLPRG+ I TRRPLVLQL + EY EFLH GK+F DF E+R
Sbjct: 61 SAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL--VNSTTEYAEFLHCKGKKFTDFEEVR 118
Query: 117 REIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRT 176
EI+A+TD+ G NKG+S I L+++SPHVL++TLVDLPG+TKVPVG+QP DIE +IR
Sbjct: 119 LEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRD 178
Query: 177 MIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARN 236
M+M ++ + +CLILAV+PANSDLANSDAL+IA DP G RTIG+ITKLD+MD GTDAR+
Sbjct: 179 MLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARD 238
Query: 237 LLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLA 296
+L K++PLR GY+GVVNRSQ+DI + I AL AE KFF S P Y LADR G P L
Sbjct: 239 VLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQ 298
Query: 297 KKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGE-ITESKAGQGALLLNILSKYSE 355
K LNQ L HI+ LPGL++++ S L+S+ KE Y + A + LL ++ +++
Sbjct: 299 KVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAV 358
Query: 356 AFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGP 415
F +EG +++ T ELSGGARI+ IF F L +++ E +I AI+N
Sbjct: 359 DFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDI 418
Query: 416 KSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMD 475
++ LF PD+ FE +++Q+ +L +PS++C + EL C +LQ++P LR+ M+
Sbjct: 419 RTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCS-EKLQQYPRLREEME 477
Query: 476 EVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSKVPLPIT 535
++ +RE ++ + +I++E+ Y+NT+H +FIG + A + + Q K
Sbjct: 478 RIVTTHIREREGRTKEQVMLLIDIELAYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQDE 537
Query: 536 RHKDGVEPDKAPSSERSLKSRAI---------LARQVNGIMADQGVRPTVEVEKVAPAGN 586
+ L+ + ++ +V+ K+
Sbjct: 538 ILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEK 597
Query: 587 TSGSSWGISSIFGGSDN-----------------RVPAGKESVTNKPFSEPVQNVEHAFA 629
SS I ++F V + K S + +
Sbjct: 598 GFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVGDKEKAS 657
Query: 630 MIHLREPPTILRPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVN 686
+ + Q ++ + L+ SY IV K + D +PK +MH ++N
Sbjct: 658 ETEENGSDSFMHSM---DPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMIN 711
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced
antiviral GTPase, membrane associated, PR binding; 3.50A
{Homo sapiens} PDB: 3zys_B
Length = 608
Score = 527 bits (1358), Expect = 0.0
Identities = 156/518 (30%), Positives = 255/518 (49%), Gaps = 14/518 (2%)
Query: 1 MADEPATNTTAAQSQPSAVPLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGK 60
M P + V P ++ L D LG + + LP +AV+G QSSGK
Sbjct: 4 MGGSPGSVAENNLCSQ----YEEKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGK 58
Query: 61 SSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKT-DEEYGEFLHLP-GKRFYDFSEIRRE 118
SSVLEAL G PRG+ I TR PLVL+L + D+ G+ + D SE+ +E
Sbjct: 59 SSVLEALSGVAL-PRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKE 117
Query: 119 IQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMI 178
I + AG G+S + I L+I S V D+TL+DLPGIT+V VG QPADI +I+T+I
Sbjct: 118 INKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLI 177
Query: 179 MSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDAR--N 236
YI++ + L V P+N D+A ++AL +A DP+G RTIGI+TK D++D+GT+ + +
Sbjct: 178 KKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237
Query: 237 LLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQ 294
++ V L+ GY+ V R Q++I S+ +AL E+ FF + P + L + + VP
Sbjct: 238 VVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPC 297
Query: 295 LAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGE-ITESKAGQGALLLNILSKY 353
LA+KL L+ HI LP L+++I + +E YG I E + + L++ ++ +
Sbjct: 298 LAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAF 357
Query: 354 SEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNAT 413
++ +++++G E + ++ R+ + F + I+ A
Sbjct: 358 NQDITALMQG-EETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAA 416
Query: 414 GPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKR 473
+ FV FE ++++QI L +P++ + D + + + F L +
Sbjct: 417 AAELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRT 476
Query: 474 MDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNF 511
I + E E +I +ME +
Sbjct: 477 AKSKIEDIRAEQEREGEKLIRLHFQMEQIVYGAFQSSS 514
Score = 32.0 bits (72), Expect = 0.80
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 662 RSYYDIVRKNIEDSIPKAVMHFLVN 686
+Y+ K I IP + F++
Sbjct: 528 MAYHQEASKRISSHIPLIIQFFMLQ 552
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like
protein 1A, GTPase, membrane fission, motor Pro; HET:
GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Length = 360
Score = 442 bits (1139), Expect = e-151
Identities = 155/358 (43%), Positives = 222/358 (62%), Gaps = 11/358 (3%)
Query: 24 SVIPLVNKLQDIFAQLGSQS--------TIELPQVAVVGSQSSGKSSVLEALVGRDFLPR 75
++I LVNK+Q LG LP +AVVG QSSGKSSVLE++VG+DFLPR
Sbjct: 3 NLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPR 62
Query: 76 GNDICTRRPLVLQLLQTKTDE-EYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVS 134
G+ I TRRPLVLQL + EY EFLHLP K+F DF+ +R+EIQ +TD+E G +K +S
Sbjct: 63 GSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAIS 122
Query: 135 DKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTP 194
I L I+SP+V+++TL+DLPG+TKV V Q I I M+ SYI++P+C+ILA++P
Sbjct: 123 SVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISP 182
Query: 195 ANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVN 254
AN DLA SDA++I+ DP G RT G++TK+D+MD+GTDA +L G+ L+ +VGVVN
Sbjct: 183 ANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVN 242
Query: 255 RSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGL 314
RSQ DI N + A E ++F + Y LA++ G LAK L++ L + IK+ +PG+
Sbjct: 243 RSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGI 302
Query: 315 KSRISSALVSVAKEHASYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSE 372
+S I+ ++ + E + G+ + + + A S +E S +
Sbjct: 303 QSLINKTVLELETELSRLGKPIAHGTDS--RVDPAIMERRSAISKRLELYRAAQSEID 358
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission,
nucleotide-binding, endocytosis, motor protein; HET:
GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Length = 353
Score = 430 bits (1106), Expect = e-146
Identities = 190/330 (57%), Positives = 241/330 (73%), Gaps = 2/330 (0%)
Query: 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRR 83
+IPLVN+LQD F+ +G + ++LPQ+AVVG QS+GKSSVLE VGRDFLPRG+ I TRR
Sbjct: 8 DLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRR 67
Query: 84 PLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIF 143
PLVLQL EY EFLH GK+F DF E+R EI+A+TD+ G NKG+S I L+++
Sbjct: 68 PLVLQL--VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVY 125
Query: 144 SPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203
SPHVL++TLVDLPG+TKVPVG+QP DIE +IR M+M ++ + +CLILAV+PANSDLANSD
Sbjct: 126 SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 185
Query: 204 ALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFN 263
AL++A DP G RTIG+ITKLD+MD GTDAR++L K++PLR GY+GVVNRSQ+DI
Sbjct: 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGK 245
Query: 264 RSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALV 323
+ I AL AE KFF S P Y LADR G P L K LNQ L HI+ LPGL++++ S L+
Sbjct: 246 KDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLL 305
Query: 324 SVAKEHASYGEITESKAGQGALLLNILSKY 353
S+ KE Y K G + + +L Y
Sbjct: 306 SIEKEVEEYKNFRPDKHGTDSRVDEMLRMY 335
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin,
fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A
{Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Length = 315
Score = 425 bits (1095), Expect = e-145
Identities = 182/314 (57%), Positives = 241/314 (76%), Gaps = 7/314 (2%)
Query: 25 VIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84
+IP++NKLQD+F LGS ++LPQ+ VVGSQSSGKSSVLE +VGRDFLPRG+ I TRRP
Sbjct: 3 LIPVINKLQDVFNTLGS-DPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRP 61
Query: 85 LVLQLLQTKTD------EEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQI 138
L+LQL +E+GEFLH P FYDFSEIR EI TD+ G NKG+S + I
Sbjct: 62 LILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPI 121
Query: 139 RLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD 198
LKI+SPHV+++TLVDLPGITKVPVG+QP DIE +IR M+M+YIK+ + +I+AVTPAN+D
Sbjct: 122 NLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181
Query: 199 LANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQE 258
LANSDALQ+A DP+G RTIG+ITKLD+MD+GTDA +L G+VIPL LG++GV+NRSQE
Sbjct: 182 LANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQE 241
Query: 259 DIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRI 318
DI+ +SI+++L +E +F++ P+Y +A+R G L+K LN++L+ HI+ LP LK ++
Sbjct: 242 DIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKV 301
Query: 319 SSALVSVAKEHASY 332
S L V E ++Y
Sbjct: 302 SKMLSDVQGELSTY 315
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle
protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
3l43_A*
Length = 299
Score = 411 bits (1059), Expect = e-140
Identities = 183/299 (61%), Positives = 229/299 (76%), Gaps = 2/299 (0%)
Query: 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRR 83
+IPLVN+LQD F+ +G + ++LPQ+AVVG QS+GKSSVLE VGRDFLPRG+ I TRR
Sbjct: 3 DLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRR 62
Query: 84 PLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIF 143
PLVLQL + EY EFLH GK+F DF E+R EI+A+TD+ G NKG+S I L+++
Sbjct: 63 PLVLQL--VNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVY 120
Query: 144 SPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203
SPHVL++TLVDLPG+TKVPVG+QP DIE +IR M+M ++ + +CLILAV+PANSDLANSD
Sbjct: 121 SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 180
Query: 204 ALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFN 263
AL+IA DP G RTIG+ITKLD+MD GTDAR++L K++PLR GY+GVVNRSQ+DI
Sbjct: 181 ALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGK 240
Query: 264 RSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSAL 322
+ I AL AE KFF S P Y LADR G P L K LNQ L HI+ LPGL++++ S L
Sbjct: 241 KDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQL 299
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle,
antiviral protein; 2.40A {Homo sapiens}
Length = 271
Score = 144 bits (364), Expect = 5e-39
Identities = 27/183 (14%), Positives = 68/183 (37%), Gaps = 2/183 (1%)
Query: 337 ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDP 396
E + + L++ ++ +++ +++++G+ E + ++ R+ + F
Sbjct: 1 EDENEKMFFLIDKVNAFNQDITALMQGE-ETVGEEDIRLFTRLRHEFHKWSTIIENNFQE 59
Query: 397 CEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKIS 456
+ I+ G + FV FE ++++QI L +P++ + D +
Sbjct: 60 GHKILSRKIQKFENQYRGRELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAF 119
Query: 457 HHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNFIGGSK 516
+ + F L + I + E E +I +ME + + G +
Sbjct: 120 TDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQ-IVYCQDQVYRGALQ 178
Query: 517 AVE 519
V
Sbjct: 179 KVR 181
Score = 43.8 bits (103), Expect = 9e-05
Identities = 8/53 (15%), Positives = 19/53 (35%)
Query: 634 REPPTILRPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVN 686
++ + + S + + L +Y+ K I IP + F++
Sbjct: 189 KKKKSWDFGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQ 241
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.3 bits (179), Expect = 2e-13
Identities = 81/576 (14%), Positives = 168/576 (29%), Gaps = 160/576 (27%)
Query: 4 EPATNTTAAQSQPSAVPLGGSVIP--------LVNKLQDIFAQLGSQSTIELPQVAVVGS 55
+P+ T Q + V KL+ +L V + G
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-----KNVLIDGV 158
Query: 56 QSSGKSSVLEALVGRDF---LPRGNDI-------CTRRPLVLQLLQT---KTDEEYGEFL 102
SGK + + V + I C VL++LQ + D +
Sbjct: 159 LGSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 103 HLPGKRFYDFSEIRREIQAQTDKEAGGN-----KGVSDKQIRLKIFSPH--VL----DIT 151
I+ E++ + N V + + F+ +L
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNAFNLSCKILLTTRFKQ 276
Query: 152 LVDL--PGITKVPVGEQPAD--IEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207
+ D T + + ++++++ Y+ DL + L
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP----------QDLP-REVLTT 325
Query: 208 AGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIK 267
+P R + II A ++ + VN + + S+
Sbjct: 326 ----NP---RRLSII-----------AESI---RDGLATWDNWKHVNCDKLTTIIESSL- 363
Query: 268 DALVAEEKFFRSRPVYNGLA---DRCGVP-QLAKKL-NQILVQHIKAILPGLKSRISSAL 322
+ L E R +++ L+ +P L + ++ + ++ L S +
Sbjct: 364 NVLEPAE----YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY--SLV 417
Query: 323 VSVAKE-----HASYGEITESKAGQGALLLNILSKYS--EAFSSMVEGKNEEMSTSELSG 375
KE + Y E+ + AL +I+ Y+ + F ++++ L
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF------DSDDLIPPYLDQ 471
Query: 376 GARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIA 435
Y + I L+ ++ E R +F+ D F + ++I
Sbjct: 472 -----YFYSHI-GHHLKNIEHPER--MTLFRM-----------VFL-DFRF---LEQKI- 507
Query: 436 RLLDPSLQCARFIYDELMK-------ISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEP 488
R + + I + L + I + E R+ I +FL
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE---------RLVNAILDFLP----- 553
Query: 489 SETMIGHIIEMEMDYINTSHPNFIGGSKAVEIALQQ 524
++E + I + + + + IAL
Sbjct: 554 ---------KIEENLICSKYTDL------LRIALMA 574
Score = 57.9 bits (139), Expect = 1e-08
Identities = 87/600 (14%), Positives = 173/600 (28%), Gaps = 167/600 (27%)
Query: 198 DLANSDALQI---AGIADPDGYR----TIGIITKL---DIMDRGTDARNLLLGKVIPLRL 247
D L + A + + D I++K I+ L RL
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL-------RL 67
Query: 248 GYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSR-------P-----VYNGLADR-CGVPQ 294
+ QE++ + +++ L KF S P +Y DR Q
Sbjct: 68 --FWTLLSKQEEM-VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 295 LAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQG--ALLLNILSK 352
+ K N +Q + L + V + G G G + L++
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLI------DG-----VLGSGKTWVALDVCL- 172
Query: 353 YSEAFSSMVEGK-------NEEMSTSELSGGARIHYIFQSIFVKSLEEVD----PCEDLT 401
S ++ K N + L ++ Y + + +
Sbjct: 173 -SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI- 230
Query: 402 DDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDP-SLQC-----ARF--IYDELM 453
++R +++ L + +V Q A+ + +L C RF + D L
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNV--------QNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 454 --KISHHCLVNELQRFPVLRKRMDEVIGNFLREGLE--PSETMIGH------IIEMEMDY 503
+H L + + ++ +L + P E + + I E D
Sbjct: 283 AATTTHISLDHHSMTL--TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 504 INTS----HPNFIGGSKAVEIALQQIKSSKVPLPITRH--KD-GVEPDKAPSSERSLKSR 556
+ T H N + +E +L ++ R V P A L
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEP-----AEYRKMFDRLSVFPPSAHIPTILL--- 392
Query: 557 AIL----ARQVNGIMADQGVRPTVEVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESV 612
+++ + ++ ++ + ++ VEK S+ I SI+ + +V E
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSL-VEK-----QPKESTISIPSIY--LELKVKLENEYA 444
Query: 613 ----------------TNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSE-------- 648
++ + ++ HL+ + E +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN----IEHPERMTLFRMVFLDF 500
Query: 649 ------------QENVEIAVTKLL--LRSYYDIVRKNIEDSIP------KAVMHFLVNPE 688
N ++ L L+ Y + I D+ P A++ FL E
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFY----KPYICDNDPKYERLVNAILDFLPKIE 556
Score = 45.2 bits (106), Expect = 8e-05
Identities = 51/337 (15%), Positives = 109/337 (32%), Gaps = 96/337 (28%)
Query: 367 EMSTSELSGGAR-IHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVP 425
+ T E + I +F+ FV + + C+D V D+P
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFD----CKD---------------------VQDMP 42
Query: 426 FEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQR-FPVLRKRMDEVIGNFLRE 484
+L + +I D ++ V+ R F L + +E++ F+ E
Sbjct: 43 KSILSKEEI---------------DHIIMSKDA--VSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 485 GLEPSETMIGHIIEMEMDYINTSHP--NFIGGSKAVEIALQQIKSSKVPLPITRHKDGVE 542
L + + I+ E S +I + + L ++R +
Sbjct: 86 VLRINYKFLMSPIKTE--QRQPSMMTRMYI---EQRD-RLYNDNQVFAKYNVSRLQ---P 136
Query: 543 PDKAPSSERSLKSRAILARQVNG-------IMADQGVRPTVEVEKVAPAGNTSGSSWGIS 595
K + L+ + ++G +A + +V+ W ++
Sbjct: 137 YLKLRQALLELRPAKNVL--IDGVLGSGKTWVALDVCL-SYKVQCKMD----FKIFW-LN 188
Query: 596 SIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSEQENVEIA 655
+ N E+V E +Q +++ +P R S + + +
Sbjct: 189 L---KNCNS----PETVL-----EMLQK------LLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 656 VTKL--LL--RSYYD--IVRKNIEDSIPKAVMHFLVN 686
+L LL + Y + +V N+++ KA F ++
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFNLS 265
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.3 bits (169), Expect = 3e-12
Identities = 104/688 (15%), Positives = 193/688 (28%), Gaps = 265/688 (38%)
Query: 23 GSV-----IP-----LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDF 72
GS+ +P + ++LQ+ F ++ + T + ++ E LVG+ F
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGF-------AADDEPTTPAE-LVGK-F 64
Query: 73 LPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKG 132
L G V L++ ++ + L+L +E D
Sbjct: 65 L--G--------YVSSLVEPSKVGQFDQVLNLC------LTEFENCYLEGND-------- 100
Query: 133 VSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAV 192
I H L L + + + +I +YI
Sbjct: 101 -----I-------HAL---AAKLLQENDTTL--------VKTKELIKNYITARIMAKRPF 137
Query: 193 T-PANSDL---ANSDALQIAGI----ADPDGY----RTI-----GIITKLDIMDRGTDAR 235
+NS L Q+ I + D Y R + ++ D++ +
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG--DLIKF---SA 192
Query: 236 NLLLGKVIPLRLGYVGVVNRSQEDIMFNRS--IKDALVAEEK-----FFRSRPV-YNGLA 287
L L + + +F + I + L + S P+ +
Sbjct: 193 ETLS----EL------IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI- 241
Query: 288 DRCGVPQLA------KKLN---QILVQHIKAILPGLKSRISSALVSVAKEHASYGEITES 338
GV QLA K L L ++K + +++ ++ S+
Sbjct: 242 ---GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV-R 297
Query: 339 KAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCE 398
KA + +L F G R + + P
Sbjct: 298 KA------ITVL------FFI----------------GVRCYEAY------------PNT 317
Query: 399 DLTDDDIRTAIQNATG-PKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISH 457
L + +++N G P L + ++ E + + + + L + + IS
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY-VNK-TNSHLPAGKQVE-----IS- 369
Query: 458 HCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNFIGGSKA 517
LVN + V+ G P +++ G + + +KA
Sbjct: 370 --LVNGAKNL---------VVS-----G--PPQSLYGLNLTLR-------------KAKA 398
Query: 518 VEIALQQIKSSKVP------------LPITRHKDGVEPDKAP--SSERSLKSRAILARQV 563
L Q S++P LP+ +P S +L
Sbjct: 399 -PSGLDQ---SRIPFSERKLKFSNRFLPVA----------SPFHSH--------LLVPAS 436
Query: 564 NGIMADQGVRPTVEVEKVAPAGNTSGSSWGIS--SIFGGSDNRVPAGKESVTNKPFSEPV 621
+ I D V+ V + I F GSD R S++
Sbjct: 437 DLINKDL-VKNNVSF---------NAKDIQIPVYDTFDGSDLR--VLSGSIS-------- 476
Query: 622 QNVEHAFAMIHLREP---PTILRPSESH 646
E I +R P T + +H
Sbjct: 477 ---ERIVDCI-IRLPVKWETTTQFKATH 500
Score = 51.6 bits (123), Expect = 9e-07
Identities = 96/484 (19%), Positives = 156/484 (32%), Gaps = 170/484 (35%)
Query: 279 SRPV---YNGLADRCGVP--------QLAKKLNQILVQHIKAILPGLKSRISSALVSVAK 327
+RP+ + L VP QL ++ N+IL + + ++ V K
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGF--AADDEPTTPAELVGK 63
Query: 328 --EHASYGEITESKAGQ-GALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQ 384
+ S + SK GQ +L L+++ + +EG + IH
Sbjct: 64 FLGYVSS-LVEPSKVGQFDQVLNLCLTEFENCY---LEGND-------------IH---- 102
Query: 385 SIFVKSLEEVDPCEDLTDDDIRT---AIQNATGP-----KSALFVPDVPFEVLIRRQIAR 436
++ K L+E D T + I+ A A P SALF + A+
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA-------VGEGNAQ 155
Query: 437 LLDPSLQCARF-------IY-DELMKI--SHHCLVNELQRFPVLRKRMDEVIGNFLREGL 486
L A F Y +EL + ++H LV +L K E + +R L
Sbjct: 156 L------VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI------KFSAETLSELIRTTL 203
Query: 487 EPSETMIGHIIEME-----------MDYINT---SHPNFIGGSKAVEIALQQIKSSKVPL 532
+ +E + + + DY+ + S P IG + Q+ V
Sbjct: 204 D-AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP-LIG--------VIQLAHYVV-- 251
Query: 533 PITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGVRPTVEVEKVAPAGNTSGSSW 592
T G P + S + + QG+ V VA A SW
Sbjct: 252 --TAKLLGFTPGELRSYLKGATGHS------------QGL-----VTAVAIA---ETDSW 289
Query: 593 GISSIFGGSDNRVPAGKESVTNKPFSEPVQN-VEHAFAM---IHLREPPTILRPSESHSE 648
ES F V+ + F + + P T L PS
Sbjct: 290 -----------------ES-----FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 649 QENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHF---------LVN----------PE- 688
EN E + +L S ++ ++ ++D + K H LVN P+
Sbjct: 328 LENNEGVPSPML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 689 LYYF 692
LY
Sbjct: 386 LYGL 389
Score = 44.7 bits (105), Expect = 1e-04
Identities = 71/484 (14%), Positives = 136/484 (28%), Gaps = 195/484 (40%)
Query: 6 ATNTTAAQSQPSAVPLGGSVIPLVNKLQD----IFAQLGSQSTI-----EL--------P 48
+ SA L + + + A G Q EL
Sbjct: 132 MAKRPFDKKSNSA---------LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 49 QVAVVGSQSSGKSSVLEALV-----GRDFLPRGNDICT------RRP----L-------- 85
V + S + L L+ +G +I P L
Sbjct: 183 LVGDLIKFS---AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 86 ---VLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGV--------- 133
V+QL Y L G + E+R ++ T G ++G+
Sbjct: 240 LIGVIQLAH------YVVTAKLLG---FTPGELRSYLKGAT----GHSQGLVTAVAIAET 286
Query: 134 ---------SDKQIRL---------KIFSPHVLDITLVDLPGITKVPVGE-QPADIEARI 174
K I + + + L ++++ + E P+
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE----DSLENNEGVPSP----- 337
Query: 175 RTMIMSYIKQPS--CLILAVTPANSDLANSDALQIAGIADPDGYRTIGIIT-------KL 225
M I + + V NS L ++I+ + +G + + +++ L
Sbjct: 338 ----MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV---NGAKNL-VVSGPPQSLYGL 389
Query: 226 DIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMF-NR------------------SI 266
++ R A + L IP S+ + F NR I
Sbjct: 390 NLTLRKAKAPSGLDQSRIPF----------SERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 267 KDALVAEEKFFRSR----PVY---NGLAD-RCGVPQLAKKL-NQILVQHI---KA----- 309
LV F ++ PVY +G +D R +++++ + I+ +
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDG-SDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 310 --IL---PGLKSRISSALVSVAKEHASYGEITESKAGQGALLLNILSKYSEAFSSMVEGK 364
IL PG S + L K+ G G + I++ ++
Sbjct: 499 THILDFGPGGASGLGV-LTHRNKD------------GTGVRV--IVA------GTLDINP 537
Query: 365 NEEM 368
+++
Sbjct: 538 DDDY 541
Score = 44.7 bits (105), Expect = 1e-04
Identities = 58/327 (17%), Positives = 96/327 (29%), Gaps = 108/327 (33%)
Query: 54 GSQSSG-------KSSVLEALVGR-DFLPRGN------DICTRRPLVLQLLQT-----KT 94
GSQ G S + + R D + DI P+ L + +
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 95 DEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVD 154
E Y + + D +I KE ++ F + L+
Sbjct: 1685 RENYSAMIF---ETIVDGKLKTEKI----FKEI-------NEHSTSYTFRS---EKGLLS 1727
Query: 155 LPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAV------TPANSDLA------NS 202
T QPA + +M PA++ A +
Sbjct: 1728 ATQFT------QPA-----L--TLMEK------AAFEDLKSKGLIPADATFAGHSLGEYA 1768
Query: 203 DALQIAGIAD----PDG-----YRTIGIITKLDIMDRGTDAR-NLLLGKVIPLRLGYVGV 252
AL A +AD YR G+ + + R R N + + P R+
Sbjct: 1769 -AL--ASLADVMSIESLVEVVFYR--GMTMQ-VAVPRDELGRSNYGMIAINPGRVAASF- 1821
Query: 253 VNRSQEDIMFNRSIKDALVAEEKFFRSRPV-YN---------GLADRCGVPQLAKKLNQI 302
SQE + + + + + + V YN G D + + LN I
Sbjct: 1822 ---SQEAL---QYVVERVGKRTGWLVE-IVNYNVENQQYVAAG--DLRALDTVTNVLNFI 1872
Query: 303 LVQHIKAILPGLKSRISSALVSVAKEH 329
+Q I I + + S +L V + H
Sbjct: 1873 KLQKIDII----ELQKSLSLEEV-EGH 1894
Score = 40.0 bits (93), Expect = 0.003
Identities = 52/274 (18%), Positives = 86/274 (31%), Gaps = 87/274 (31%)
Query: 326 AKEH--ASYG------------EITESKAGQGALLLNILSKYSE-AFSSMVEGKNEEMST 370
A H +YG +T G+ I YS F ++V+GK +
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK--RIRENYSAMIFETIVDGKLKTEKI 1706
Query: 371 SELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDV-PFEVL 429
+ Y F+S L+ T Q T P AL + + FE L
Sbjct: 1707 FKEINEHSTSYTFRS----------EKGLLS----AT--QF-TQP--ALTLMEKAAFEDL 1747
Query: 430 IRRQIARLLDP----SL-------QCARFI-YDELMKISHH---CLVNELQRFPVLRK-- 472
+ + SL A + + L+++ + + + R + R
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 473 RM-----DEVIGNFLREGLEP------SETMIGHIIEMEMDYI---NTSHPNF---IGGS 515
M V +F +E L+ T G ++E I N N G
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRT--GWLVE-----IVNYNV--ENQQYVAAGD 1858
Query: 516 -KAVEIA---LQQIKSSKV---PLPITRHKDGVE 542
+A++ L IK K+ L + + VE
Sbjct: 1859 LRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Score = 35.4 bits (81), Expect = 0.074
Identities = 25/198 (12%), Positives = 55/198 (27%), Gaps = 77/198 (38%)
Query: 501 MDYINT-----SHPNF---IGGSKAVEIALQQIK---SSKVPLPITRHKDGVEPDKAPSS 549
MD +T SH + + A Q++ + +P P +G D P++
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEP----TEGFAADDEPTT 56
Query: 550 ERSLKSRAI--LARQVNGIMADQGVRPTVEVEKVAPAGNTSGSSWGISSIFGGSDNRVPA 607
L + + ++ V V +V +
Sbjct: 57 PAELVGKFLGYVSSLVE----PSKVGQFDQVLNLC------------------------- 87
Query: 608 GKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHS------EQENVEIAVTKLLL 661
+ E+ + L ++ H+ ++ + + TK L+
Sbjct: 88 -------------LTEFENCY-----------LEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 662 RSYYDIVRKNIEDSIPKA 679
++Y R + K
Sbjct: 124 KNYIT-ARIMAKRPFDKK 140
Score = 33.9 bits (77), Expect = 0.25
Identities = 36/252 (14%), Positives = 67/252 (26%), Gaps = 93/252 (36%)
Query: 226 DIMDRGTDARNLLLGKVI-------PLRL-----GYVGVVNRSQEDIMFNRSIKDALVAE 273
D+ +R + G I P+ L G G R M +I D +
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT 1703
Query: 274 EKFFR------SRPVYNGLADRCGVPQLAKKLNQ--ILVQHIKAILPGLKSR--I----- 318
EK F+ + + Q Q + + A LKS+ I
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKGLLSATQFT----QPALTLMEK-AAFEDLKSKGLIPADAT 1758
Query: 319 ----S----SALVSVAKEHASYGEITESKAGQGAL----LLNILSKYSEAFSSMVEGKNE 366
S +AL S+A + L+ ++ V +
Sbjct: 1759 FAGHSLGEYAALASLA----------------DVMSIESLVEVVFYRGMTMQVAVPR--D 1800
Query: 367 EMSTSELSGGARIHYIFQSIFVKSLEEVDP---CEDLTDDDIRTAIQNATGPKSALFVPD 423
E+ S A ++P + + ++ ++ G ++ V
Sbjct: 1801 ELGRSNYGMIA----------------INPGRVAASFSQEALQYVVERV-GKRTGWLV-- 1841
Query: 424 VPFEVLIRRQIA 435
+I
Sbjct: 1842 ---------EIV 1844
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 61.5 bits (148), Expect = 5e-10
Identities = 38/226 (16%), Positives = 67/226 (29%), Gaps = 27/226 (11%)
Query: 12 AQSQPSAVPLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRD 71
A+ + S+ + + L ++ V+G GKS+ L AL+G +
Sbjct: 38 AELAGDSSSGKLSLERDIEDITIASKNLQQGV----FRLLVLGDMKRGKSTFLNALIGEN 93
Query: 72 FLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNK 131
LP + CT VL+ E+ GK + + D
Sbjct: 94 LLPSDVNPCTAVLTVLR----YGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKL 149
Query: 132 GVSDKQ-----IRLKIFSPHVL---DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK 183
KQ + P L I +VD PG+ + + + Y+
Sbjct: 150 EQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGL----------NDTEARNELSLGYVN 199
Query: 184 QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 229
IL V A+ + + G ++ D +
Sbjct: 200 N-CHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVR 244
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 47.5 bits (112), Expect = 1e-05
Identities = 28/189 (14%), Positives = 69/189 (36%), Gaps = 23/189 (12%)
Query: 46 ELPQVAVVGSQSSGKSSVLEALVGRDF--LPRGNDICTRRPLVLQLLQTKTDEEYGEFLH 103
P V V G S+GK+S ++ L+ ++ G + T + + +T+ +
Sbjct: 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVV 123
Query: 104 LPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVP- 162
P K F + ++ + ++ + + I+++D PGI
Sbjct: 124 DPEKPFRKLNPFGNTF--------------LNRFMCAQLPNQVLESISIIDTPGILSGAK 169
Query: 163 -VGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGI 221
+ D A ++ + + LI+ + A+ + + + G + +
Sbjct: 170 QRVSRGYDFPA-----VLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVV 224
Query: 222 ITKLDIMDR 230
+ K D+++
Sbjct: 225 LNKADMVET 233
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.051
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 31/57 (54%)
Query: 523 QQIK--SSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGVRPTVE 577
Q +K + + L D AP+ LA ++ T+E
Sbjct: 20 QALKKLQASLKL--------YADDSAPA----------LA-----------IKATME 47
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 34.3 bits (78), Expect = 0.14
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRG 76
+ + D ++ S + VAV G SGKSS + L G G
Sbjct: 54 TNSAISDALKEIDS----SVLNVAVTGETGSGKSSFINTLRGIGNEEEG 98
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 33.6 bits (76), Expect = 0.15
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 18/71 (25%)
Query: 153 VDLPGITKVP--VGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGI 210
V+ K + A + IR I+S ++ T L IA
Sbjct: 122 VNYSSEVKENSVDSDDKAKVPPLIR--IVSGLELSD------TKQK----GKKFLVIA-- 167
Query: 211 ADPDGYRTIGI 221
+P + I I
Sbjct: 168 YEP--FENIAI 176
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 33.3 bits (77), Expect = 0.22
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 50 VAVVGSQSSGKSSVLEALVG 69
VAVVG GKSS+L AL+
Sbjct: 34 VAVVGQVGCGKSSLLSALLA 53
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 32.9 bits (76), Expect = 0.27
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 50 VAVVGSQSSGKSSVLEALVG 69
+AV GS +GK+S+L ++G
Sbjct: 37 LAVAGSTGAGKTSLLMMIMG 56
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 32.7 bits (75), Expect = 0.35
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 50 VAVVGSQSSGKSSVLEALVG 69
+AV GS +GK+S+L ++G
Sbjct: 67 LAVAGSTGAGKTSLLMMIMG 86
>1puo_A Major allergen I polypeptide, fused chain 2, chain 1; CAT allergen,
uteroglobin, secretoglobin; 1.85A {Felis catus} SCOP:
a.101.1.1 a.101.1.1
Length = 170
Score = 31.7 bits (71), Expect = 0.48
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 31 KLQDIFAQLGSQSTIELPQV--AVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQ 88
K+QD + + G S + V + S+ +V + G +IC +
Sbjct: 44 KIQDCYVENGLISRVLDGLVMTTISSSKDCMGEAVQNTVEDLKLNTLGREICPAVKRDVD 103
Query: 89 LLQTKTDEEYGEFL 102
L T T +EY E +
Sbjct: 104 LFLTGTPDEYVEQV 117
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 29.6 bits (67), Expect = 2.2
Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 17/132 (12%)
Query: 139 RLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK---QPSCLILAVTPA 195
R I + ++D+PG + + +++ RI+ I+ +I+ + + + V
Sbjct: 36 RKIIEI-EWKNHKIIDMPGFGFMMGLPK--EVQERIKDEIVHFIEDNAKNIDVAVLVVDG 92
Query: 196 NSDLANSDALQIAGIADPD----------GYRTIGIITKLDIMDRGTDARNLL-LGKVIP 244
+ + G D TI + KLD + + N L +P
Sbjct: 93 KAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP 152
Query: 245 LRLGYVGVVNRS 256
L + S
Sbjct: 153 LSEIDKVFIPIS 164
>1xxq_A Mannose-binding lectin; tetrameric B-prism fold, jacalin-fold,
sugar binding protein; 1.80A {Morus nigra} PDB: 1xxr_A*
1j4t_A 1j4s_A 1j4u_A* 1vbp_A* 1vbo_A*
Length = 161
Score = 29.1 bits (65), Expect = 3.4
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 563 VNGIMADQGVRPTVEVEKVAPAGNTSGSSW------GISSIFGGSDNRV 605
+ G + T + +V G G++W GI I + +
Sbjct: 1 MAGTSTNTQTTGTSQTIEVGLWGGPGGNAWDDGSYTGIREINLSHGDAI 49
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR
fold, structural genomics, joint center for structural
genomics, JCSG; 1.87A {Thermotoga maritima} SCOP:
d.37.1.1
Length = 157
Score = 28.8 bits (65), Expect = 3.9
Identities = 7/50 (14%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 212 DPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261
D + +G+I + ++ + K +R ++ ++ +IM
Sbjct: 54 ARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIM 102
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 28.4 bits (64), Expect = 6.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 46 ELPQVAVVGSQSSGKSSVLEALVGR 70
+VA G ++GKSS L L +
Sbjct: 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 27.9 bits (63), Expect = 7.4
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 20/84 (23%)
Query: 152 LVDLP--GITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAV-------TPANSDLANS 202
VDLP G KV E+ + ++ Y K L + P +SD
Sbjct: 72 FVDLPGYGYAKVSKKER-----MLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSD---- 122
Query: 203 DALQIAGIADPDGYRTIGIITKLD 226
L + ++TK+D
Sbjct: 123 --LMMVEWMKSLNIPFTIVLTKMD 144
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 28.1 bits (63), Expect = 7.6
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 52 VVGSQSSGKSSVLEALVGRDFLPRGNDICT 81
+VG+ SGK+++L+ L+ G T
Sbjct: 7 IVGNTGSGKTTLLQQLMKTKKSDLGMQSAT 36
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 27.9 bits (63), Expect = 8.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 46 ELPQVAVVGSQSSGKSSVLEALVGR 70
LP++A+ G + GKSS + +L+ R
Sbjct: 22 GLPEIALAGRSNVGKSSFINSLINR 46
Score = 27.9 bits (63), Expect = 8.9
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 152 LVDLP--GITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAV 192
VD+P G KV E+ MI +YI L V
Sbjct: 73 FVDVPGYGFAKVSKSER-----EAWGRMIETYITTREELKAVV 110
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 28.0 bits (63), Expect = 8.1
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 46 ELPQVAVVGSQSSGKSSVLEALVGR 70
P++A G ++GKS+ + L +
Sbjct: 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 28.2 bits (64), Expect = 8.3
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 540 GVEPDKAPSSERSLKSRAILARQVNGIMAD 569
GVEP+ ++S + +I+ +AD
Sbjct: 206 GVEPEAGNDGQQSFRKGSIVHIDTPKTIAD 235
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase,
tpase activating protein, CDC42, phosphoinositide
3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP:
a.116.1.1
Length = 216
Score = 28.0 bits (63), Expect = 9.6
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 637 PTILRPSESHSEQENVEIAVTKLLLRSYYDI 667
P + R S + S+ I V ++L+ + ++
Sbjct: 167 PMLFRFSAASSDNTENLIKVIEILISTEWNE 197
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.379
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,522,325
Number of extensions: 668355
Number of successful extensions: 1795
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1765
Number of HSP's successfully gapped: 61
Length of query: 699
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 599
Effective length of database: 3,909,693
Effective search space: 2341906107
Effective search space used: 2341906107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)