Query 005391
Match_columns 698
No_of_seqs 263 out of 717
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 00:01:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005391.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005391hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 5E-113 2E-117 951.1 41.7 452 7-461 18-510 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 2E-109 8E-114 924.5 45.6 447 6-455 4-529 (530)
3 2ikf_A RNA uridylyl transferas 100.0 1.7E-51 5.9E-56 438.1 18.1 288 1-338 1-348 (353)
4 4fh3_A Poly(A) RNA polymerase 100.0 2E-50 6.8E-55 426.1 24.0 279 28-356 13-348 (349)
5 3nyb_A Poly(A) RNA polymerase 100.0 9.6E-49 3.3E-53 413.2 21.1 264 29-341 19-299 (323)
6 4e8f_A Poly(A) RNA polymerase 100.0 3.9E-48 1.3E-52 420.2 26.3 300 9-362 26-382 (405)
7 2b4v_A RNA editing complex pro 100.0 1.4E-39 4.6E-44 358.9 22.5 281 42-342 33-441 (468)
8 3hj4_A Minor editosome-associa 100.0 1.2E-36 4.1E-41 327.4 22.1 280 26-357 6-380 (384)
9 3pq1_A Poly(A) RNA polymerase; 100.0 1.3E-35 4.5E-40 326.4 26.0 246 18-340 117-437 (464)
10 1r89_A TRNA nucleotidyltransfe 99.2 3.3E-10 1.1E-14 124.2 19.0 233 30-335 6-246 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.1 1.1E-08 3.9E-13 108.4 25.1 276 29-330 9-322 (349)
12 4at7_A Interleukin enhancer-bi 97.8 0.003 1E-07 67.8 23.2 265 20-338 20-295 (364)
13 1no5_A Hypothetical protein HI 97.2 0.0011 3.6E-08 59.6 8.2 44 84-129 28-71 (114)
14 2rff_A Putative nucleotidyltra 96.9 0.0022 7.5E-08 57.8 8.1 53 48-112 10-62 (111)
15 1wot_A Putative minimal nucleo 96.9 0.0012 4.1E-08 57.9 5.8 49 52-113 7-55 (98)
16 4at7_B NF90, interleukin enhan 96.9 0.09 3.1E-06 57.0 21.2 263 38-338 21-327 (383)
17 1ylq_A Putative nucleotidyltra 96.7 0.0034 1.2E-07 54.8 7.0 28 84-111 18-46 (96)
18 4ebj_A Aminoglycoside nucleoti 94.9 0.027 9.3E-07 58.1 5.5 56 45-112 14-69 (272)
19 2fmp_A DNA polymerase beta; nu 94.3 0.26 8.9E-06 52.3 11.8 117 82-233 171-298 (335)
20 1kny_A Kntase, kanamycin nucle 94.1 0.055 1.9E-06 54.8 5.8 30 84-113 32-61 (253)
21 2bcq_A DNA polymerase lambda; 92.7 0.47 1.6E-05 50.4 10.5 116 82-233 168-292 (335)
22 1jaj_A DNA polymerase beta-lik 90.6 0.29 1E-05 47.6 5.5 114 76-233 24-142 (174)
23 2ihm_A POL MU, DNA polymerase 89.6 1.3 4.3E-05 47.5 9.9 52 82-135 175-226 (360)
24 3jz0_A Lincosamide nucleotidyl 88.3 1.6 5.4E-05 45.6 9.3 101 38-164 12-116 (287)
25 1jms_A Terminal deoxynucleotid 85.9 4.1 0.00014 44.0 11.2 53 82-135 195-248 (381)
26 3b0x_A DNA polymerase beta fam 84.0 5.5 0.00019 44.9 11.6 107 83-234 180-286 (575)
27 1v4a_A Glutamate-ammonia-ligas 71.6 5.5 0.00019 43.6 6.6 48 82-129 153-208 (440)
28 3k7d_A Glutamate-ammonia-ligas 59.8 19 0.00065 40.2 8.0 48 82-129 233-289 (498)
29 2fcl_A Hypothetical protein TM 53.6 44 0.0015 31.8 8.5 72 81-161 31-107 (169)
30 2pbe_A AAD6, aminoglycoside 6- 48.4 24 0.00083 36.5 6.1 75 85-164 25-110 (294)
31 2w9m_A Polymerase X; SAXS, DNA 42.1 39 0.0013 38.1 7.0 94 86-234 182-276 (578)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=5.1e-113 Score=951.09 Aligned_cols=452 Identities=47% Similarity=0.841 Sum_probs=422.0
Q ss_pred CcccccCCCCCCCCChHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEE
Q 005391 7 QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKI 86 (698)
Q Consensus 7 ~~~Gvt~PIS~~~Pt~~D~~~t~~L~~~L~~~~l~pSeEE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~e~~~~~~~~kI 86 (698)
++||||+|||+++||++|+..|++|+++|++++++||+||.++|++||++|+++|++|++++++++|++++++..++++|
T Consensus 18 ~~~g~~~pis~~~p~~~d~~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~~~~~v 97 (514)
T 1q79_A 18 KHYGITSPISLAAPKETDALLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKI 97 (514)
T ss_dssp -CCSSSCCSCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEE
T ss_pred cccCCCCCCcCCCCCHHHHHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhcccCCceE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeeccCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCccceEEEEecCeeeeEEeeccccc
Q 005391 87 FTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLW 166 (698)
Q Consensus 87 ~~FGSy~lGv~~p~SDID~lcv~P~~v~r~edFF~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~~ 166 (698)
++||||++|+|+|+||||++|++|.++++ ++||..++++|++.++++++++|++|+||||||+++||+|||+||+++..
T Consensus 98 ~~FGS~~lG~~~p~SDID~~~v~p~~~~~-~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~~ 176 (514)
T 1q79_A 98 FTFGSYRLGVHTKGADIDALCVAPRHVDR-SDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQ 176 (514)
T ss_dssp EEEHHHHHTCCCTTCCEEEEEEECTTSCH-HHHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSCS
T ss_pred EEeeeeccCCCCCCCceeEEEecCCcCCH-HHHHHHHHHHHhcCccCceEEEecCCcccEEEEEECCeeEEEEEecCCcc
Confidence 99999999999999999999999999998 59999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCchhhhccchhhhhhhhcchhhHHHHHHhccCchhHHHHHHHHHHHHHHcCCCCCCCCccchHHHHHHHHHH
Q 005391 167 VIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 246 (698)
Q Consensus 167 ~iP~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llR~IK~WAK~RgIysn~~G~LGG~swaILVa~v 246 (698)
.+|+++++.++++|+++|+++++||||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|+||||++
T Consensus 177 ~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~ 256 (514)
T 1q79_A 177 TIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVART 256 (514)
T ss_dssp SBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHH
T ss_pred cCcccccCCchhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHhhccCCCCCceeecccccCCCCccccCCCCCCCCCCCCeeEeCCCCCCCCcccccChhhHHH
Q 005391 247 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRI 326 (698)
Q Consensus 247 cQlyPnas~~~LL~~FF~~Ys~wdW~~pV~L~~i~~G~l~~~vWdP~~~~~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~v 326 (698)
||+||++++++||.+||++|++|+|++||+|+.+++|.+++++|+|+.|++|++|+|||+||++|++|+|+||+.+|+++
T Consensus 257 ~Ql~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs~st~~~ 336 (514)
T 1q79_A 257 CQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMV 336 (514)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCcccccCCcchhhhcccEEEEEEEecChhhhhccchhhhhHHHHHHhhccC-------
Q 005391 327 MMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKRKQ------- 399 (698)
Q Consensus 327 I~~EF~RA~~Il~~i~~~~~~~~W~~Lfe~~~FF~~Yk~yL~I~v~a~~~e~~~~w~G~VESRlR~Lv~~~~~------- 399 (698)
|++||+||+++|+++..++. +|++||++++||.+|+|||+|+|++.+++++.+|.||||||||.|+.+...
T Consensus 337 I~~Ef~rA~~il~~i~~~~~--~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~~~~i~~a 414 (514)
T 1q79_A 337 MVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLA 414 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTSS--CHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTSTTEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCC--CHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHHHhccCCCceee
Confidence 99999999999999998887 999999999999999999999999999999999999999999999987110
Q ss_pred -------------------------CCCC---------CCCceeeccccHHHHHHHHhhcccCCCCcEEEEEeeccCCCC
Q 005391 400 -------------------------GVPV---------GEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLP 445 (698)
Q Consensus 400 -------------------------~~~~---------~~~~~~di~~~v~eF~~~v~~~~~~~~gm~i~v~~vk~~~LP 445 (698)
|+.. ....++||+..+++|++.|++|..|++||+|.|+|||+++||
T Consensus 415 ~~~P~~f~~~~~~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~i~v~~vk~~~Lp 494 (514)
T 1q79_A 415 HVNPQSFPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLH 494 (514)
T ss_dssp EECSCCEECCCSCTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEEHHHHG
T ss_pred ecCccccCCccccccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcEEEEEEechHHCc
Confidence 1100 112458888899999999999999999999999999999999
Q ss_pred CCcCCCCCcCCCCCCC
Q 005391 446 NFVFPGGVRPSRPSKG 461 (698)
Q Consensus 446 ~~v~~~~~r~~~~~~~ 461 (698)
++||+++.|+++++..
T Consensus 495 ~~v~~~~~~~~~~~~~ 510 (514)
T 1q79_A 495 QLLPSHVLQKKKKHST 510 (514)
T ss_dssp GGCC------------
T ss_pred hhhcchhccCCCCCCc
Confidence 9999999988877543
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=2.4e-109 Score=924.45 Aligned_cols=447 Identities=43% Similarity=0.788 Sum_probs=425.6
Q ss_pred CCcccccCCCCCCCCChHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcE
Q 005391 6 GQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAK 85 (698)
Q Consensus 6 ~~~~Gvt~PIS~~~Pt~~D~~~t~~L~~~L~~~~l~pSeEE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~e~~~~~~~~k 85 (698)
.++||||+|||+++||++|++.+.+|+++|++++++||+||.++|++||++|+++|++|++++++++|++++++++++++
T Consensus 4 ~~~~g~t~pis~~~p~~~d~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~ 83 (530)
T 2hhp_A 4 QKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGK 83 (530)
T ss_dssp CGGGCSSCCSCCCCCCHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCE
T ss_pred cccCccCCCCcCCCCChHHhhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCce
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeccCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCccceEEEEecCeeeeEEeecccc
Q 005391 86 IFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSL 165 (698)
Q Consensus 86 I~~FGSy~lGv~~p~SDID~lcv~P~~v~r~edFF~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~ 165 (698)
|++||||++|+|+|+||||++|++|.++++ ++||..++++|++.++++++++|++|+||||||+++||+|||+|++++.
T Consensus 84 V~~FGSy~lG~~~p~SDID~~v~~p~~~~~-~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~ 162 (530)
T 2hhp_A 84 IFTYGSYRLGVHGPGSDIDTLVVVPKHVTR-EDFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQ 162 (530)
T ss_dssp EEEEHHHHHTCCCTTCCEEEEEEECTTCCH-HHHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSS
T ss_pred EEEecccccCCCCCCCceeEEEecCCcCCH-HHHHHHHHHHHhcCCCCceEEEecCCcccEEEEEECCEeeEEEEecccc
Confidence 999999999999999999999999999998 5999999999999999999999999999999999999999999999988
Q ss_pred cccCCCCCCCchhhhccchhhhhhhhcchhhHHHHHHhccCchhHHHHHHHHHHHHHHcCCCCCCCCccchHHHHHHHHH
Q 005391 166 WVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVAR 245 (698)
Q Consensus 166 ~~iP~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llR~IK~WAK~RgIysn~~G~LGG~swaILVa~ 245 (698)
.++|+++++.++++|+++|+++++||||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|+||||+
T Consensus 163 ~~ip~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~ 242 (530)
T 2hhp_A 163 PQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVAR 242 (530)
T ss_dssp SCBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHH
T ss_pred ccCCcccCCCchhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHhhccCCCCCceeecccccCCCCccccCCCCCCCCCCCCeeEeCCCCCCCCcccccChhhHH
Q 005391 246 ICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 325 (698)
Q Consensus 246 vcQlyPnas~~~LL~~FF~~Ys~wdW~~pV~L~~i~~G~l~~~vWdP~~~~~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~ 325 (698)
+||+||++++++||.+||++|++|+|++||+++++++|.+++++|+|+.|.+|+.|+|||+||++|++|+|+||+.+|++
T Consensus 243 ~lQl~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~ 322 (530)
T 2hhp_A 243 ICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKK 322 (530)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHH
Confidence 99999999999999999999999999999999999989888999999998888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCCcccccCCcchhhhcccEEEEEEEec-ChhhhhccchhhhhHHHHHHhhcc--C---
Q 005391 326 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAE-NADDLRNWKGWVESRLRQLTLKRK--Q--- 399 (698)
Q Consensus 326 vI~~EF~RA~~Il~~i~~~~~~~~W~~Lfe~~~FF~~Yk~yL~I~v~a~-~~e~~~~w~G~VESRlR~Lv~~~~--~--- 399 (698)
+|++||+||+++|++++.++. +|.+||++++||.+|+|||+|+++++ +++++.+|.||||||+|.|+.+.. .
T Consensus 323 ~I~~Ef~rA~~ll~~i~~~~~--~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~~~~i~ 400 (530)
T 2hhp_A 323 VILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVLAGIK 400 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS--CHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred HHHHHHHHHHHHHHHHhcCCC--CHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhcccCce
Confidence 999999999999999998777 99999999999999999999999998 999999999999999999997610 0
Q ss_pred ------------------------------------------------------------------CCCC---CCCceee
Q 005391 400 ------------------------------------------------------------------GVPV---GEGEQFD 410 (698)
Q Consensus 400 ------------------------------------------------------------------~~~~---~~~~~~d 410 (698)
|+.. ..++++|
T Consensus 401 ~a~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~~~~~~~d 480 (530)
T 2hhp_A 401 IAHPFTKPFESSYCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIENKKEKVD 480 (530)
T ss_dssp EEEECSSCEEEEEECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC----CCCCC
T ss_pred eeecCCcccCccccccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCCCCCceEe
Confidence 0000 1245799
Q ss_pred ccccHHHHHHHHhhccc-CCCC-cE-EEEEeeccCCCCCCcCCCCC-cC
Q 005391 411 IRLTVKEFKQAVSMYTL-RKPG-MQ-ISVAHVTRRNLPNFVFPGGV-RP 455 (698)
Q Consensus 411 i~~~v~eF~~~v~~~~~-~~~g-m~-i~v~~vk~~~LP~~v~~~~~-r~ 455 (698)
|+.++++|++.|++|.. |++| |+ |.|+|||+++||+|||++|+ ||
T Consensus 481 i~~~~~~F~~~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v~~~~~~~~ 529 (530)
T 2hhp_A 481 IHIPCTEFVNLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEKRP 529 (530)
T ss_dssp CHHHHHHHHHHHHHTSTTTTCSSSEEEEEEEEEGGGCCGGGSCTTSCCC
T ss_pred ChhHHHHHHHHHHhhhhhcccCCcceEEEEEechhhCCHhhccCCCcCC
Confidence 99999999999999998 9987 78 99999999999999998665 44
No 3
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=1.7e-51 Score=438.08 Aligned_cols=288 Identities=18% Similarity=0.254 Sum_probs=225.6
Q ss_pred CCCCCC---CcccccCCCCCCCCChHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 005391 1 MGSSNG---QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQ 77 (698)
Q Consensus 1 ~~~~~~---~~~Gvt~PIS~~~Pt~~D~~~t~~L~~~L~~~~l~pSeEE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~e~ 77 (698)
|||+.- ..-|++++++.++|++.++ +++|+++++++ +++.+|.+.|++++++|++++++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~P~~~~l--~~~l~~~~~~~--~~~~~e~~~r~~~~~~l~~~i~~~~------------ 64 (353)
T 2ikf_A 1 MGSSHHHHHHSSGLVPRGSHMPPSPAVV--GRSLVNSFKQF--VSKDLHTRHVDATYRLVLDCVAAVD------------ 64 (353)
T ss_dssp ----------------------CCHHHH--HHHHHHHTTTT--CC-----CCHHHHHHHHHHHHHHHC------------
T ss_pred CCCccccccccccceecccCCCCCHHHH--HHHHHHHHHHh--cCChhhHHHHHHHHHHHHHHHHHHC------------
Confidence 677443 2359999999999999887 88999999864 5788899999999999999998631
Q ss_pred hhhccCcEEEEeeeec-cCCCCCCCCceEEeecCCCCC------------c--hhhHHHHHHHHHhcCCCceeeEeecCC
Q 005391 78 LLQEANAKIFTFGSYR-LGVHGPGADIDTLCVGPRHAT------------R--EEDFFGELHQMLTEMPEVTELHPVPDA 142 (698)
Q Consensus 78 ~~~~~~~kI~~FGSy~-lGv~~p~SDID~lcv~P~~v~------------r--~edFF~~l~~~L~~~~~V~~l~~I~~A 142 (698)
.+++|++||||+ +|+++|+||||++|+.|..+. + ..+++..+++.|++...+.+++.|.+|
T Consensus 65 ----p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~A 140 (353)
T 2ikf_A 65 ----PLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRT 140 (353)
T ss_dssp ----TTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSS
T ss_pred ----CCcEEEEecCccccCCCCCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhcCCCCceEEeccc
Confidence 478999999998 999999999999998874321 0 136888899999987778899999999
Q ss_pred ccceEEEEe-cCeeeeEEeecccccccCCCCCCCchhhhccchhhhhhhhcchhhHHHHHHhccCchhHHHHHHHHHHHH
Q 005391 143 HVPVMKFKF-SGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWA 221 (698)
Q Consensus 143 rVPIIKf~~-~GI~iDLsfa~l~~~~iP~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llR~IK~WA 221 (698)
+||||||++ .||+|||+|++. +|++.++.|..++..+++||.++++||+||
T Consensus 141 rVPIiK~~~~~~i~~Dis~~n~----------------------------~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa 192 (353)
T 2ikf_A 141 RVPVVRVKGGGAVDFDITAYRR----------------------------NGVRNSALLRAYFEQNPPCRWLSMSIKRWS 192 (353)
T ss_dssp SSCEEEEECSSSCEEEEEESCC----------------------------HHHHHHHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred ceeEEEEEcCCCcEEEEEecCc----------------------------cHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 999999999 689999999764 689999999999999999999999999999
Q ss_pred HHcCCCCCCC-CccchHHHHHHHHHHHhhC------C------------------------CCCHHHHHHHHHHhhc-cC
Q 005391 222 KRRGVYSNVA-GFLGGINWALLVARICQLY------P------------------------NAVPSMLVSRFFRVYT-QW 269 (698)
Q Consensus 222 K~RgIysn~~-G~LGG~swaILVa~vcQly------P------------------------nas~~~LL~~FF~~Ys-~w 269 (698)
|+||||++.. |+||||+|+|||+++||.. | +.++++||.+||+||+ +|
T Consensus 193 ~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~f 272 (353)
T 2ikf_A 193 KQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEF 272 (353)
T ss_dssp HHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTS
T ss_pred HHcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccChhhccCCCcCCccccCCCCcccHHHHHHHHHHHhcccc
Confidence 9999999999 9999999999999999852 3 2357999999999999 89
Q ss_pred CCCCceeecccccCCC-C--ccccCCC------CCCCCCCCCeeEeCCCCCCCCcccccChhhHHHHHHHHHHHHHHH
Q 005391 270 RWPNPVLLCAIEEGSL-G--LQVWDPR------RNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEIC 338 (698)
Q Consensus 270 dW~~pV~L~~i~~G~l-~--~~vWdP~------~~~~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~vI~~EF~RA~~Il 338 (698)
||.++|+. ++.|.. . .+.|+++ .++.++.+.|+|+||++|.+|+|++|+.+++..|++||+||++++
T Consensus 273 d~~~~vIs--i~~~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 273 DSDKQVIS--LNRPGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTA 348 (353)
T ss_dssp CTTTEEEC--SSSSSCEEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTT
T ss_pred CcCceEEE--cCCCcceechhhcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99998763 333322 1 2468642 122345678999999999999999999999999999999999976
No 4
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=2e-50 Score=426.09 Aligned_cols=279 Identities=20% Similarity=0.268 Sum_probs=225.2
Q ss_pred hHHHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCCCCCCceE
Q 005391 28 TRKLEKYLRDV--NLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDT 105 (698)
Q Consensus 28 t~~L~~~L~~~--~l~pSeEE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~e~~~~~~~~kI~~FGSy~lGv~~p~SDID~ 105 (698)
+++|.+++.+. .+-||++|.++|++++++|+++++++. .+++|++||||++|+++|+||||+
T Consensus 13 ~~el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~----------------p~~~v~~fGS~~~g~~~~~SDiDl 76 (349)
T 4fh3_A 13 HKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRIS----------------PDAELVAFGSLESGLALKNSDMDL 76 (349)
T ss_dssp CHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCEEEEESHHHHTCCBSSCCEEE
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEEeeccCCCCCCCCCEEE
Confidence 45566665432 356999999999999999999998642 368999999999999999999999
Q ss_pred EeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCccceEEEEec-------CeeeeEEeecccccccCCCCCCCchh
Q 005391 106 LCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFS-------GVSIDLLYARLSLWVIPEDLDISQDS 178 (698)
Q Consensus 106 lcv~P~~v~r~edFF~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~-------GI~iDLsfa~l~~~~iP~~ldl~~d~ 178 (698)
+|+.|...... .++..+...+.+ ...+++.|.+|+||||||.+. |+.||++|++.
T Consensus 77 ~v~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~--------------- 138 (349)
T 4fh3_A 77 CVLMDSRVQSD-TIALQFYEELIA--EGFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNR--------------- 138 (349)
T ss_dssp EEECCTTSCHH-HHHHHHHHHHHH--TTEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCH---------------
T ss_pred EEecCCCCChH-HHHHHHHHHHHh--hcccceEeeeeeeeeEEEEecccccccccceeecCcCcc---------------
Confidence 99999888763 666666555543 345788899999999999973 78999998753
Q ss_pred hhccchhhhhhhhcchhhHHHHHHhccCchhHHHHHHHHHHHHHHcCCCCCCCCccchHHHHHHHHHHHhhC------CC
Q 005391 179 ILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLY------PN 252 (698)
Q Consensus 179 lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llR~IK~WAK~RgIysn~~G~LGG~swaILVa~vcQly------Pn 252 (698)
+|+|+++.|..+++.+++||.++++||+|||+||||++..|+||||+|+|||+++||.. |+
T Consensus 139 -------------~g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~ 205 (349)
T 4fh3_A 139 -------------LAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPN 205 (349)
T ss_dssp -------------HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCC
T ss_pred -------------hHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCch
Confidence 68999999999999999999999999999999999999999999999999999999952 32
Q ss_pred --------------------------------CCHHHHHHHHHHhhc-cCCCCCceeecccccCCCC--cccc-------
Q 005391 253 --------------------------------AVPSMLVSRFFRVYT-QWRWPNPVLLCAIEEGSLG--LQVW------- 290 (698)
Q Consensus 253 --------------------------------as~~~LL~~FF~~Ys-~wdW~~pV~L~~i~~G~l~--~~vW------- 290 (698)
.++++||.+||+||+ +|||.+.|+......+.+. .+.|
T Consensus 206 l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~ 285 (349)
T 4fh3_A 206 LLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHT 285 (349)
T ss_dssp SSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC------
T ss_pred hhhccccccccccCcccccccchhhcccccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhccccccccc
Confidence 368999999999999 6999999874332222221 1234
Q ss_pred CCCCCCCCCCCCeeEeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHcccCCCCcccccCC
Q 005391 291 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEP 356 (698)
Q Consensus 291 dP~~~~~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~vI~~EF~RA~~Il~~i~~~~~~~~W~~Lfe~ 356 (698)
++..+..+..+.|+|+||++|++|+|++|+..++..|++||+||+++|++.. .+.+|++|||.
T Consensus 286 ~~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~---~~~~~~~lfe~ 348 (349)
T 4fh3_A 286 GSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS---YPIPYDSLFEE 348 (349)
T ss_dssp ---------CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS---SSCCGGGGGSC
T ss_pred CcccccCCCCceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc---cCCCHHHHhhc
Confidence 3333334456789999999999999999999999999999999999997532 23489999986
No 5
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-49 Score=413.19 Aligned_cols=264 Identities=22% Similarity=0.335 Sum_probs=226.8
Q ss_pred HHHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCCCCCCceEE
Q 005391 29 RKLEKYLRDV--NLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTL 106 (698)
Q Consensus 29 ~~L~~~L~~~--~l~pSeEE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~e~~~~~~~~kI~~FGSy~lGv~~p~SDID~l 106 (698)
+.|+++|.++ .+.||+||.++|++++++|++++++++ .+++|++|||+++|+++|+||||++
T Consensus 19 ~~L~~Ei~~f~~~i~Pt~eE~~~R~~~~~~l~~~~~~~~----------------p~~~v~~fGS~~~g~~~~~SDiDl~ 82 (323)
T 3nyb_A 19 DWLTFEIKDFVAYISPSREEIEIRNQTISTIREAVKQLW----------------PDADLHVFGSYSTDLYLPGSDIDCV 82 (323)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCCEEEESTTTTTCCCTTSCEEEE
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEeCccccCCCCCCCCceEE
Confidence 4455555443 467999999999999999999998753 2578999999999999999999999
Q ss_pred eecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCccceEEEEe--cCeeeeEEeecccccccCCCCCCCchhhhccch
Q 005391 107 CVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKF--SGVSIDLLYARLSLWVIPEDLDISQDSILQNAD 184 (698)
Q Consensus 107 cv~P~~v~r~edFF~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~--~GI~iDLsfa~l~~~~iP~~ldl~~d~lL~~lD 184 (698)
|+.|.......+++..+++.|++.+.++++++|.+|+||||||++ .||+|||+|++.
T Consensus 83 v~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~--------------------- 141 (323)
T 3nyb_A 83 VTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERT--------------------- 141 (323)
T ss_dssp ECSSCCGGGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSCS---------------------
T ss_pred EecCCCChhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecCc---------------------
Confidence 999986533246889999999998888999999999999999996 799999999863
Q ss_pred hhhhhhhcchhhHHHHHHhccCchhHHHHHHHHHHHHHHcCCCCCCCCccchHHHHHHHHHHHhhCCC---------CCH
Q 005391 185 EQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPN---------AVP 255 (698)
Q Consensus 185 e~svrSLNG~Rvtd~Il~lVP~~~~FR~llR~IK~WAK~RgIysn~~G~LGG~swaILVa~vcQlyPn---------as~ 255 (698)
+|+|+++.|.++++.+++||.++++||+|||+||||++..|+||||+|+|||+++||++|+ .++
T Consensus 142 -------~g~~~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~l 214 (323)
T 3nyb_A 142 -------NGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNL 214 (323)
T ss_dssp -------STTHHHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCH
T ss_pred -------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccccH
Confidence 6899999999999999999999999999999999999999999999999999999999985 368
Q ss_pred HHHHHHHHHhhc-cCCCCCceeecccccCC---CCccccCCCCCCCCCCCCeeEeCCCCCCCCcccccChhhHHHHHHHH
Q 005391 256 SMLVSRFFRVYT-QWRWPNPVLLCAIEEGS---LGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEF 331 (698)
Q Consensus 256 ~~LL~~FF~~Ys-~wdW~~pV~L~~i~~G~---l~~~vWdP~~~~~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~vI~~EF 331 (698)
++||.+||+||+ +|||.+.++ .++.|. ...+.|..- ++.++.+.|+|+||++|++|++++. ..++.|++||
T Consensus 215 g~LL~~Ff~~Y~~~Fd~~~~~I--sv~~g~~~~~~k~~~~~~-~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~F 289 (323)
T 3nyb_A 215 GVLLIEFFELYGKNFGYDDVAL--GSSDGYPVYFPKSTWSAI-QPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKAF 289 (323)
T ss_dssp HHHHHHHHHHHHHTCCTTTEEE--EESSSCEEEEEGGGCGGG-CSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCCcEE--EEecCCcceeeHHhcccc-cccCCCceEEEeCCCCCCcccccch--HHHHHHHHHH
Confidence 999999999999 999999776 345553 233567532 2234467899999999999999985 4688999999
Q ss_pred HHHHHHHHHH
Q 005391 332 QRGHEICEAM 341 (698)
Q Consensus 332 ~RA~~Il~~i 341 (698)
++|+++|.+-
T Consensus 290 ~~A~~~L~~~ 299 (323)
T 3nyb_A 290 AGAFDLLTNR 299 (323)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 6
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=3.9e-48 Score=420.21 Aligned_cols=300 Identities=18% Similarity=0.235 Sum_probs=239.5
Q ss_pred ccccCCCCCCCCChHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEE
Q 005391 9 LGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFT 88 (698)
Q Consensus 9 ~Gvt~PIS~~~Pt~~D~~~t~~L~~~L~~~~l~pSeEE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~e~~~~~~~~kI~~ 88 (698)
.|...+-|.+...+..-+.+++|.+++.. +-||++|.++|++++++|++++++++ .+++|++
T Consensus 26 ~~~~~~~~~~~~~~~~~~L~~~i~~~~~~--i~Pt~eE~~~R~~v~~~l~~~i~~~~----------------p~~~v~~ 87 (405)
T 4e8f_A 26 LHISKSCSYQKVPNSHKEFTKFCYEVYNE--IKISDKEFKEKRAALDTLRLCLKRIS----------------PDAELVA 87 (405)
T ss_dssp ------------CCSCHHHHHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEEEE
T ss_pred ccccccCccccCchHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEE
Confidence 45555555544444445677888888875 67999999999999999999998753 3689999
Q ss_pred eeeeccCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCccceEEEEe---c----CeeeeEEee
Q 005391 89 FGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKF---S----GVSIDLLYA 161 (698)
Q Consensus 89 FGSy~lGv~~p~SDID~lcv~P~~v~r~edFF~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~---~----GI~iDLsfa 161 (698)
|||+++|+++|+||||++|+.|..... ++++..+++.|++. ..+++.|.+|+||||||.+ . ||+|||+|+
T Consensus 88 fGS~~~G~~~~~SDiDl~v~~~~~~~~-~~~l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~ 164 (405)
T 4e8f_A 88 FGSLESGLALKNSDMDLCVLMDSRVQS-DTIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFN 164 (405)
T ss_dssp ESHHHHTCCBSSCCEEEEEECCC---C-TTHHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEES
T ss_pred EeeccCCCCCCCCCEEEEEEecCCCCH-HHHHHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCceEEEEeec
Confidence 999999999999999999999876554 36889999999976 6789999999999999995 4 999999998
Q ss_pred cccccccCCCCCCCchhhhccchhhhhhhhcchhhHHHHHHhccCchhHHHHHHHHHHHHHHcCCCCCCCCccchHHHHH
Q 005391 162 RLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWAL 241 (698)
Q Consensus 162 ~l~~~~iP~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llR~IK~WAK~RgIysn~~G~LGG~swaI 241 (698)
+. +|++.+..|..++..+++||.++++||+|||+||||+++.|+||||+|+|
T Consensus 165 n~----------------------------~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l~l 216 (405)
T 4e8f_A 165 NR----------------------------LAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVL 216 (405)
T ss_dssp CH----------------------------HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHHHH
T ss_pred cc----------------------------chHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHHHH
Confidence 63 47788888888888889999999999999999999999999999999999
Q ss_pred HHHHHH-hh-----CCC--------------------------------CCHHHHHHHHHHhhc-cCCCCCceeecccc-
Q 005391 242 LVARIC-QL-----YPN--------------------------------AVPSMLVSRFFRVYT-QWRWPNPVLLCAIE- 281 (698)
Q Consensus 242 LVa~vc-Ql-----yPn--------------------------------as~~~LL~~FF~~Ys-~wdW~~pV~L~~i~- 281 (698)
||++|| |. +|+ .++++||..||+||+ +|||.+.|+. ++
T Consensus 217 mvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIs--ir~ 294 (405)
T 4e8f_A 217 MVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVT--FRR 294 (405)
T ss_dssp HHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEEC--SSS
T ss_pred HHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhhhccccccccHHHHHHHHHHHHhcccCCCCcEEE--Eec
Confidence 999999 73 232 468999999999999 8999998763 44
Q ss_pred cCC-CC--ccccCCCCC-------CCCCCCCeeEeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHcccCCCCcc
Q 005391 282 EGS-LG--LQVWDPRRN-------PKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWD 351 (698)
Q Consensus 282 ~G~-l~--~~vWdP~~~-------~~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~vI~~EF~RA~~Il~~i~~~~~~~~W~ 351 (698)
.|. +. .+.|....+ ..++.+.|+|+||++|.+|+|++|+..++..|++||+||+++|++... +.+|+
T Consensus 295 ~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~---~~~w~ 371 (405)
T 4e8f_A 295 PDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSY---PIPYD 371 (405)
T ss_dssp TTCCCBHHHHTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSS---SCCGG
T ss_pred CCcccccccccccccccccccccccccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhcc---CCCHH
Confidence 343 32 246876421 113467899999999999999999999999999999999999975322 34899
Q ss_pred cccCCcchhhh
Q 005391 352 TLFEPFTFFEA 362 (698)
Q Consensus 352 ~Lfe~~~FF~~ 362 (698)
.||+++++..+
T Consensus 372 ~Lf~~~~~~~~ 382 (405)
T 4e8f_A 372 SLFEEAPIPPR 382 (405)
T ss_dssp GGGSCCCCC--
T ss_pred HHhCcCCCccc
Confidence 99999999875
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=1.4e-39 Score=358.91 Aligned_cols=281 Identities=17% Similarity=0.254 Sum_probs=206.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeee-ccCCCCCCCCceEEeecCCCCCch-hhH
Q 005391 42 ESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSY-RLGVHGPGADIDTLCVGPRHATRE-EDF 119 (698)
Q Consensus 42 pSeEE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~e~~~~~~~~kI~~FGSy-~lGv~~p~SDID~lcv~P~~v~r~-edF 119 (698)
+++++.+.|+.++++|++++++|+ .+++|++|||| .+|+++|+||||++|+.+...... ...
T Consensus 33 ~~~~~~~~~~~a~~~l~~~v~~~~----------------p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~~~~~~~~~~ 96 (468)
T 2b4v_A 33 GPEHMFRTAIRAQQQLQGLADKWT----------------PDAKVYCCGSMVTYGQMERGSDLDLACMFDDPYPSHEVQA 96 (468)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEEEEETHHHHHSSCBTTCCEEEEEECSSSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHC----------------CCcEEEEeeCchhcCCCCCCCceeEEEecCCCCccchhhH
Confidence 788999999999999999999875 37999999999 799999999999999987322111 111
Q ss_pred H--HHHHHHHhcC-CC--ceeeEeecCCccceEEEEec------------------------------------------
Q 005391 120 F--GELHQMLTEM-PE--VTELHPVPDAHVPVMKFKFS------------------------------------------ 152 (698)
Q Consensus 120 F--~~l~~~L~~~-~~--V~~l~~I~~ArVPIIKf~~~------------------------------------------ 152 (698)
. ..+...|++. ++ +.++++|.+||||||||++.
T Consensus 97 ~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 176 (468)
T 2b4v_A 97 KRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKARTALLDVRNQCVGDNDVEYIA 176 (468)
T ss_dssp HHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHHHHHTEEEEEEESCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccceeEeccCCCcceEEEEeccccccccccccccccccccccccccccccccccccccccchh
Confidence 1 2478888876 55 57899999999999999832
Q ss_pred ----------------C--eeeeEEeeccc-----ccccCCCCCCC-----chhhhccch------------hhhhhhhc
Q 005391 153 ----------------G--VSIDLLYARLS-----LWVIPEDLDIS-----QDSILQNAD------------EQTVRSLN 192 (698)
Q Consensus 153 ----------------G--I~iDLsfa~l~-----~~~iP~~ldl~-----~d~lL~~lD------------e~svrSLN 192 (698)
| ..+|++|.+.. ....|+. .+. ++-....+| +.|.. .+
T Consensus 177 ~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~ld~rf~~~~~gi~~DISfn-~~ 254 (468)
T 2b4v_A 177 EKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDG-KIMTRGMREDYTRDVLDVRFVPEMFMYRWDISFV-GY 254 (468)
T ss_dssp HHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCS-SSSCGGGGGGEEEEESCTTSCCGGGSSCEEEESC-SH
T ss_pred hhcccccccccccccccccccceeecccccchhhhhcccccc-cccccccccccccccccccccccccceEEEEecc-hh
Confidence 2 22556776521 0111211 000 000000111 12344 68
Q ss_pred chhhHHHHHHhccCchh-HHHHHHHHHHHHHHcCCCCCCCCccchHHHHHHHHHHHhhC-----------------CC--
Q 005391 193 GCRVTDQILRLVPKIQN-FRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLY-----------------PN-- 252 (698)
Q Consensus 193 G~Rvtd~Il~lVP~~~~-FR~llR~IK~WAK~RgIysn~~G~LGG~swaILVa~vcQly-----------------Pn-- 252 (698)
|++.+..|..++-.+++ ||.|+++||+|||+||||+++.|+||||+|+|||++|+|.. |+
T Consensus 255 gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v~P~vlP~lq~l~~~~ 334 (468)
T 2b4v_A 255 GVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYP 334 (468)
T ss_dssp HHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCSSC
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHHhcCcCCCCCcccccchhhccccc
Confidence 99999999999888889 99999999999999999999999999999999999999864 11
Q ss_pred ----------CCHHHHHHHHHHhhc-cCCCCCceeecccccCCC---CccccCCCCCC-CCCCCCeeEeCCCCC----CC
Q 005391 253 ----------AVPSMLVSRFFRVYT-QWRWPNPVLLCAIEEGSL---GLQVWDPRRNP-KDKYHLMPIITPAYP----CM 313 (698)
Q Consensus 253 ----------as~~~LL~~FF~~Ys-~wdW~~pV~L~~i~~G~l---~~~vWdP~~~~-~Dr~hlMpIiTPa~P----~~ 313 (698)
.++++||.+||+||+ +|||.+.++ .++.|.. ..+.|....+. ....+.|+|+||++| .+
T Consensus 335 ~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vI--Sir~g~~~~K~~~~w~~~~n~~~~~~~~L~IeDPfd~~~~~~~ 412 (468)
T 2b4v_A 335 DFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVV--SLNRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGL 412 (468)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEB--CSSSSSCEEHHHHTCCCGGGEETTEECSSCBBCSSTTTTTTCC
T ss_pred CCCcccccCccCHHHHHHHHHHHHccccCCCCcEE--EecCCcceecccccccccccccCCCcceEEEECCCCCCCCCCc
Confidence 158999999999999 899999875 3444532 12457642111 111247999999999 99
Q ss_pred CcccccChhhHHHHHHHHHHHHHHHHHHH
Q 005391 314 NSSYNVSTSTLRIMMDEFQRGHEICEAME 342 (698)
Q Consensus 314 Nst~NVs~sTl~vI~~EF~RA~~Il~~i~ 342 (698)
|+|++|+..+++.|++||++|+++|+...
T Consensus 413 Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 413 NLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp BTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999998654
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=1.2e-36 Score=327.44 Aligned_cols=280 Identities=16% Similarity=0.207 Sum_probs=209.7
Q ss_pred HhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCCCCCCceE
Q 005391 26 MRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDT 105 (698)
Q Consensus 26 ~~t~~L~~~L~~~~l~pSeEE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~e~~~~~~~~kI~~FGSy~lGv~~p~SDID~ 105 (698)
+.|+|+.++.+ .+.||++|.+.|++++.+|++++++-+ .+++|++|||+.+|+++|+||||+
T Consensus 6 ~lt~EI~dFy~--~i~PT~eE~~~R~~vv~~l~~ii~~~~----------------p~~~v~~FGS~~tgl~lp~SDiDl 67 (384)
T 3hj4_A 6 EFIRGMMAHYR--ASLPPPEHSVVIHELQKRVLDIGMLAV----------------NKAHVELFGSHVSGFCTPHSDADI 67 (384)
T ss_dssp HHHHHHHHHHH--HHSCCTTHHHHHHHHHHHHHHHHHHHS----------------TTCEEEEESHHHHSCCCTTCCEEE
T ss_pred HHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCcEEEEeeeccCCCCCCCCCeeE
Confidence 34455555544 367999999999999999999997621 368999999999999999999998
Q ss_pred EeecCCCCC------ch-hhHHHH---HHHHHhcCCCceeeEeecCCccceEEEEe--cCeeeeEEeecccccccCCCCC
Q 005391 106 LCVGPRHAT------RE-EDFFGE---LHQMLTEMPEVTELHPVPDAHVPVMKFKF--SGVSIDLLYARLSLWVIPEDLD 173 (698)
Q Consensus 106 lcv~P~~v~------r~-edFF~~---l~~~L~~~~~V~~l~~I~~ArVPIIKf~~--~GI~iDLsfa~l~~~~iP~~ld 173 (698)
++..+.... +. ...... +.+.+. ..+++.+. |.+|+||||||.+ .||+|||+|++.
T Consensus 68 vI~~~~~~~~~~~~~~~~~~~~lrll~L~k~~~-~~~ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn~---------- 135 (384)
T 3hj4_A 68 SLTYRNFSPWLQGMERVDEQNNKRMTRFGKEAS-AMGMEDVR-YIRARIPVVQFTDGVTGIHCDVSIGNI---------- 135 (384)
T ss_dssp EEECTTCCGGGTTCHHHHHHHHHHHHHHHHHHH-HHTCEEEE-EECSSSCEEEEECTTTCCEEEEEECCH----------
T ss_pred EEecCCCcccccccchhhHHHHHHHHHHHhhcc-cCCeeEEe-ecCcccCEEEEEEcCCCeEEEEEeccc----------
Confidence 888765321 10 001111 222222 13566655 4599999999997 599999999864
Q ss_pred CCchhhhccchhhhhhhhcchhhHHHHHHhccC-chhHHHHHHHHHHHHHHcCCCCCCCCccchHHHHHHHHHHHhhCC-
Q 005391 174 ISQDSILQNADEQTVRSLNGCRVTDQILRLVPK-IQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYP- 251 (698)
Q Consensus 174 l~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~-~~~FR~llR~IK~WAK~RgIysn~~G~LGG~swaILVa~vcQlyP- 251 (698)
+|++.+..|..+... .++||.|+++||+||++|||+++..|+||||+|+|||+++||..|
T Consensus 136 ------------------~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~v 197 (384)
T 3hj4_A 136 ------------------GGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGL 197 (384)
T ss_dssp ------------------HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHTS
T ss_pred ------------------chHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcCCC
Confidence 477888888888777 457999999999999999999999999999999999999999742
Q ss_pred --CC------------------------------------CHHHH----HHHHHHhhccCCCCCcee-ecccccC-C---
Q 005391 252 --NA------------------------------------VPSML----VSRFFRVYTQWRWPNPVL-LCAIEEG-S--- 284 (698)
Q Consensus 252 --na------------------------------------s~~~L----L~~FF~~Ys~wdW~~pV~-L~~i~~G-~--- 284 (698)
+. ++++| |.+||+||+.|||.+-|+ |.+++.- .
T Consensus 198 LP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~~ 277 (384)
T 3hj4_A 198 LPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYE 277 (384)
T ss_dssp SCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHHH
T ss_pred CCccccccccCCcccccccHhhhhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCcccccccc
Confidence 10 26777 999999999999999765 3332211 0
Q ss_pred ------------CCccccCC-----CC-----------------CCCCCCCCeeEeCCCCCCCCcccccChhhHHHHHHH
Q 005391 285 ------------LGLQVWDP-----RR-----------------NPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDE 330 (698)
Q Consensus 285 ------------l~~~vWdP-----~~-----------------~~~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~vI~~E 330 (698)
...+.|.. .. .......++.|+| +.-.+|+++.|+.+....|+.|
T Consensus 278 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 356 (384)
T 3hj4_A 278 RVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQE 356 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHHH
T ss_pred hhhhhhhhhccchhhhhhhhhhhccccCCCCCCCccccccCccccccccccceeeee-eccccccceecCccchhHHHHH
Confidence 01234531 00 0122345899999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHcccCCCCcccccCCc
Q 005391 331 FQRGHEICEAMEKNEADVDWDTLFEPF 357 (698)
Q Consensus 331 F~RA~~Il~~i~~~~~~~~W~~Lfe~~ 357 (698)
|+||++|+.+-..+ .+.+++|...
T Consensus 357 ~~~~~~~~~~~~~~---~~~~~~~~~~ 380 (384)
T 3hj4_A 357 FNRLREMLIDKESE---LKFDEVFRES 380 (384)
T ss_dssp HHHHHHHHTTTGGG---CCHHHHTCCC
T ss_pred HHHHHHHHhccccc---ccHHHHhhhc
Confidence 99999999754333 2677777544
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=326.36 Aligned_cols=246 Identities=15% Similarity=0.252 Sum_probs=192.3
Q ss_pred CCCChHHHHh----hHHHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeee
Q 005391 18 AGPTDDDLMR----TRKLEKYLRDV--NLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGS 91 (698)
Q Consensus 18 ~~Pt~~D~~~----t~~L~~~L~~~--~l~pSeEE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~e~~~~~~~~kI~~FGS 91 (698)
.+|+..++.. -..|.++|.++ .+-||++|.+.|..++.+|++++++. + .+++|++|||
T Consensus 117 ~~~~~~~l~~~L~~a~sl~~EI~~f~~~i~PT~eE~~~R~~vv~~le~ii~~~---------f-------P~a~V~~FGS 180 (464)
T 3pq1_A 117 XXXSNKQLFELLCYAESIDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAY---------F-------PDCIVRPFGS 180 (464)
T ss_dssp CC--CHHHHHHHTTSSSHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHTTT---------S-------TTCEEEEEGG
T ss_pred ccCCHHHHHHHHhccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH---------C-------CCCEEEEeCC
Confidence 4455544432 13344555443 34599999999999999999999752 2 3689999999
Q ss_pred eccCCCCCCCCceEEeecCCCCC----------------------c--hhhHHHHHHHHHhcC-CCceeeEeecCCccce
Q 005391 92 YRLGVHGPGADIDTLCVGPRHAT----------------------R--EEDFFGELHQMLTEM-PEVTELHPVPDAHVPV 146 (698)
Q Consensus 92 y~lGv~~p~SDID~lcv~P~~v~----------------------r--~edFF~~l~~~L~~~-~~V~~l~~I~~ArVPI 146 (698)
+.+|+++|+||||+++..+.... | ...++..+.+.|++. +++.+++.|.+|||||
T Consensus 181 ~~tGL~lp~SDIDlvl~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPI 260 (464)
T 3pq1_A 181 SVNTFGKLGCDLDMFLDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPL 260 (464)
T ss_dssp GTSSCCBTTCCEEEEEECC-----CCSCEECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCE
T ss_pred CccCCCCCCCCeEEEEecCCcccccccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCE
Confidence 99999999999998776543110 0 013566777888874 7899999999999999
Q ss_pred EEEEec--CeeeeEEeecccccccCCCCCCCchhhhccchhhhhhhhcchhhHHHHHHhccCchhHHHHHHHHHHHHHHc
Q 005391 147 MKFKFS--GVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRR 224 (698)
Q Consensus 147 IKf~~~--GI~iDLsfa~l~~~~iP~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llR~IK~WAK~R 224 (698)
|||.+. ||+|||+|++. +|++.+..|..+...+++||.|+++||+|||+|
T Consensus 261 IKf~~~~tgi~~DIS~nn~----------------------------~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak~r 312 (464)
T 3pq1_A 261 VRFSHQASGFQCALTTNNR----------------------------IALTSSELLYIYGALDSRVRALVFSVRCWARAH 312 (464)
T ss_dssp EEEEETTTCCEEEEECSCT----------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCeEEEEecCCC----------------------------cHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHh
Confidence 999995 99999999874 588889999888888999999999999999999
Q ss_pred CCCCCCCCc-cchHHHHHHHHHHHhhCC-----C------------------------------------CCHHHHHHHH
Q 005391 225 GVYSNVAGF-LGGINWALLVARICQLYP-----N------------------------------------AVPSMLVSRF 262 (698)
Q Consensus 225 gIysn~~G~-LGG~swaILVa~vcQlyP-----n------------------------------------as~~~LL~~F 262 (698)
||+++..|+ ||||+|+|||++|+|... + .++++||..|
T Consensus 313 ~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gF 392 (464)
T 3pq1_A 313 SLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEF 392 (464)
T ss_dssp TSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC---------------------CCCCCCHHHHHHHH
T ss_pred CCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCcccceeeccccccccccHhhcCCCCCcCCHHHHHHHH
Confidence 999999997 999999999999999752 1 1469999999
Q ss_pred HHhhccCCCCCceeecccccCCCCccccCCCCCCCCCCCCeeEeCCCCCCCCcccccChhhHHHHHHHHHHHHHHHHH
Q 005391 263 FRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEA 340 (698)
Q Consensus 263 F~~Ys~wdW~~pV~L~~i~~G~l~~~vWdP~~~~~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~vI~~EF~RA~~Il~~ 340 (698)
|+||++|||.+.|+ .| ..|++.||+...+..++.|+++|..||+.
T Consensus 393 F~yYa~FDf~~~vI---------------------------sI------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~ 437 (464)
T 3pq1_A 393 FEYFGNFAXXXXXX---------------------------XX------XXXXXXXVSQSQLQKFVDLARESAWILQQ 437 (464)
T ss_dssp HHHGGGCCCCCCCC---------------------------CC------C-------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCccccc---------------------------cc------ccccccccCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998764 11 78999999999999999999999999983
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.21 E-value=3.3e-10 Score=124.23 Aligned_cols=233 Identities=17% Similarity=0.172 Sum_probs=153.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCCCC-CCceEEee
Q 005391 30 KLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPG-ADIDTLCV 108 (698)
Q Consensus 30 ~L~~~L~~~~l~pSeEE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~e~~~~~~~~kI~~FGSy~lGv~~p~-SDID~lcv 108 (698)
.+.++|.. +-|+++|.+.=.++.+.|...+++ + +.+++..|||+-|.+++| ||||+.++
T Consensus 6 ~~~~~l~~--i~P~~~E~~~~~~~~~~I~~~L~~-~-----------------~~~v~~~GS~AkgT~Lrg~sDIDIfv~ 65 (437)
T 1r89_A 6 ILEKALEL--VIPDEEEVRKGREAEEELRRRLDE-L-----------------GVEYVFVGSYARNTWLKGSLEIDVFLL 65 (437)
T ss_dssp HHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHH-H-----------------TCCEEEEHHHHHTCCCTTCCEEEEEEE
T ss_pred HHHHHHHh--hCCCHHHHHHHHHHHHHHHHHHHh-C-----------------CCeEEEeccccCCCcCCCCCCceEEEE
Confidence 45556653 669999988888888888877765 1 247999999999999988 89999999
Q ss_pred cCCCCCchhhH----HHHHHHHHhcCCCceeeEeecCCccceEEEEecCeeeeEEeecccccccCCCCCCCchh-hhccc
Q 005391 109 GPRHATREEDF----FGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDS-ILQNA 183 (698)
Q Consensus 109 ~P~~v~r~edF----F~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~~~iP~~ldl~~d~-lL~~l 183 (698)
.|....++ ++ +..+.+.|++ . .+.-|.=|-+...+.|+++|+.=|-- +.+.. +....
T Consensus 66 f~~~~~~e-~l~~~~l~~~~e~l~~---~----~~~ya~hpyV~~~f~g~~vDVVP~y~----------v~~g~~~~tav 127 (437)
T 1r89_A 66 FPEEFSKE-ELRERGLEIGKAVLDS---Y----EIRYAEHPYVHGVVKGVEVDVVPCYK----------LKEPKNIKSAV 127 (437)
T ss_dssp ECTTSCHH-HHHHHHHHHHHHHSSS---E----EEEESSSEEEEEEETTEEEEEEEEEC----------CSSSSCCCSHH
T ss_pred cCCCCCHH-HHHHHHHHHHHHHHHH---h----hhhccCCceEEEEecceEEEEEEEEE----------ccCCccccccc
Confidence 98876542 33 2233344432 1 24556668888889999999974421 11110 11001
Q ss_pred hhhhhhhhcchhhHHHHHHhccCchhHHHHHHHHHHHHHHcCCCCC--CCCccchHHHHHHHHHHHhhCCCCCHHHHHHH
Q 005391 184 DEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSN--VAGFLGGINWALLVARICQLYPNAVPSMLVSR 261 (698)
Q Consensus 184 De~svrSLNG~Rvtd~Il~lVP~~~~FR~llR~IK~WAK~RgIysn--~~G~LGG~swaILVa~vcQlyPnas~~~LL~~ 261 (698)
|- ...-++++.+-.. .++..+|++|.|.|.-|+|++ ..++++||.+=||++++ .+-..+|..
T Consensus 128 Dr-------tp~H~~fv~~r~~---~~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y------G~f~~vl~~ 191 (437)
T 1r89_A 128 DR-------TPFHHKWLEGRIK---GKENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY------GSFLETVKN 191 (437)
T ss_dssp HH-------HHHHHHHHTTTST---TCHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH------SSHHHHHHH
T ss_pred cC-------cHHHHHHHHhhhh---hhhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH------cCHHHHHHH
Confidence 00 0112334433222 288999999999999999987 46779999999999994 233333333
Q ss_pred HHHhhccCCCCCceeecccccCCCCccccCCCCCCCCCCCCeeEeCCCCCCCCcccccChhhHHHHHHHHHHHH
Q 005391 262 FFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGH 335 (698)
Q Consensus 262 FF~~Ys~wdW~~pV~L~~i~~G~l~~~vWdP~~~~~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~vI~~EF~RA~ 335 (698)
+ + +|..++.+. ++.+ .... ...+.|+||.+|..|+|.++|..++..+..+-+...
T Consensus 192 ~----~--~w~~~~~Id-~~~~---~~~~---------~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l 246 (437)
T 1r89_A 192 A----R--RWTRRTVID-VAKG---EVRK---------GEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFM 246 (437)
T ss_dssp H----T--TCCTTEEEE-GGGT---EEEE---------CSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHH
T ss_pred H----H--HhCCCeEEe-cCCC---cccC---------CCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHH
Confidence 3 3 455566442 1111 0000 135789999999999999999998888876655443
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.12 E-value=1.1e-08 Score=108.45 Aligned_cols=276 Identities=16% Similarity=0.199 Sum_probs=144.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccC-cEEEEeeeeccCCCCCC-CCceEE
Q 005391 29 RKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEAN-AKIFTFGSYRLGVHGPG-ADIDTL 106 (698)
Q Consensus 29 ~~L~~~L~~~~l~pSeEE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~e~~~~~~~-~kI~~FGSy~lGv~~p~-SDID~l 106 (698)
+.|.+++.+ .+-|+.++...=..+++.|...+++-. .+ + .. .... .+++.+|||+-|..+++ ||||++
T Consensus 9 ~~l~~fi~~-~l~p~~~~~~~i~~~~~~I~~~L~~~~----~~-~--~~--~~~~v~~v~~~GSyargT~lrg~sDiDlv 78 (349)
T 1px5_A 9 RDLDKFIED-HLLPNTXFRTQVKEAIDIVXRFLKERC----FQ-G--TA--DPVRVSKVVKGGSSGKGTTLRGRSDADLV 78 (349)
T ss_dssp GGHHHHHHH-HTSCCHHHHHHHHHHHHHHHHHHHHHT----TC-C-------CCEEEEEEEEEEC--------CEEEEEE
T ss_pred HHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhhh----cc-c--cc--CCcceEEEEEecCcCCCcccCCCCceeEE
Confidence 457778753 577998888766677777777665421 00 0 00 0011 37889999999999986 899999
Q ss_pred eecCCCCCch------hhHHHHHHHHHhcC---CCce-eeEee-cCCccc-eEEEEe------cCeeeeEEeeccccccc
Q 005391 107 CVGPRHATRE------EDFFGELHQMLTEM---PEVT-ELHPV-PDAHVP-VMKFKF------SGVSIDLLYARLSLWVI 168 (698)
Q Consensus 107 cv~P~~v~r~------edFF~~l~~~L~~~---~~V~-~l~~I-~~ArVP-IIKf~~------~GI~iDLsfa~l~~~~i 168 (698)
++.+...+.+ ..+...+.+.|.+. ..+. ..... ..-..| .+.|.+ .|+++|++=|--....+
T Consensus 79 V~l~~~~~~~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~ 158 (349)
T 1px5_A 79 VFLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQW 158 (349)
T ss_dssp EEEESCSCTTHHHHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSC
T ss_pred EEECCCCchhhHHhhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhccc
Confidence 9887643321 13444455555531 1121 12111 111245 366666 47999988553221111
Q ss_pred CCCCCCCchhhhccchhhhhhhhcchhh---HHHHHHhc-cCchhHHHHHHHHHHHHHHcCCCCCCCCccchHHHHHHHH
Q 005391 169 PEDLDISQDSILQNADEQTVRSLNGCRV---TDQILRLV-PKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVA 244 (698)
Q Consensus 169 P~~ldl~~d~lL~~lDe~svrSLNG~Rv---td~Il~lV-P~~~~FR~llR~IK~WAK~RgIysn~~G~LGG~swaILVa 244 (698)
...-....+.....+....-..-.|... +..-.+.+ .....|+.++|++|.|.++.+. ....+.+.||.+-+|++
T Consensus 159 ~~~~~~~~~~y~~li~~~~~~~~~g~~~~~~~~~h~~~v~~~~~~~k~lIRLlK~W~~~~~~-~~~~~~~ssy~lELL~~ 237 (349)
T 1px5_A 159 TPGYKPNPEIYVQLIKECKSRGKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKK-THGNKLPPQYALELLTV 237 (349)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHTCTTTTGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHT-TCSSCCCCHHHHHHHHH
T ss_pred ccccCCChHHHHHHHhhccccccCccchhcCHHHHHHHHHhCcHHHHHHHHHHHHHHHHhhh-cccCCCCChHHHHHHHH
Confidence 0000000111100000000000012111 11112222 2346899999999999998864 22346789999999999
Q ss_pred HHHhhCCCC---CHHHHHHHHHHhhccCCCCCceeecccccCCCCccccCCCCCCCC-----------CCCCeeEeCCCC
Q 005391 245 RICQLYPNA---VPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKD-----------KYHLMPIITPAY 310 (698)
Q Consensus 245 ~vcQlyPna---s~~~LL~~FF~~Ys~wdW~~pV~L~~i~~G~l~~~vWdP~~~~~D-----------r~hlMpIiTPa~ 310 (698)
+.....+.. +..+-+..+|++-++|.- -.| .|....+..+ +...--|+||+.
T Consensus 238 ~a~e~~~~~~~~~~~~~f~~vle~l~~~~~-~~i-------------~w~~~y~~~~~~~~~fl~~~l~~~~p~I~DP~d 303 (349)
T 1px5_A 238 YAWEQGSRKTDFSTAQGFQTVLELVLKHQK-LCI-------------FWEAYYDFTNPVVGRCMLQQLKKPRPVILDPAD 303 (349)
T ss_dssp HHHHHHTCCSSCCHHHHHHHHHHHHHTGGG-CEE-------------CCCSSCCSSSHHHHHHHHHHHTSSSCEEBCTTC
T ss_pred HHHHhCCCccCCCHHHHHHHHHHHHHhCCc-cce-------------eeeccccccchhHHhhhhhhhcCCCCeeeCCCC
Confidence 988766543 456678888888887631 122 2432111111 011236999999
Q ss_pred CCCCcccccChhhHHHHHHH
Q 005391 311 PCMNSSYNVSTSTLRIMMDE 330 (698)
Q Consensus 311 P~~Nst~NVs~sTl~vI~~E 330 (698)
|..|++.. +......+..|
T Consensus 304 p~~NVa~~-~~~~~~~~~~~ 322 (349)
T 1px5_A 304 PTGNVGGG-DTHSWQRLAQE 322 (349)
T ss_dssp TTCBTTCS-CHHHHHHHHHH
T ss_pred CCCcccCC-chhhHHHHHHH
Confidence 99998877 77777777633
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=97.80 E-value=0.003 Score=67.84 Aligned_cols=265 Identities=14% Similarity=0.093 Sum_probs=159.6
Q ss_pred CChHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCCC
Q 005391 20 PTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGP 99 (698)
Q Consensus 20 Pt~~D~~~t~~L~~~L~~~~l~pSeEE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~e~~~~~~~~kI~~FGSy~lGv~~p 99 (698)
|.+.|-..++.|.+-=. .+.||++|...=..++.+++.++...+ .+.|.-+- .=..+...|||.-|+++.
T Consensus 20 ~~~~d~~~~~~llkr~~--~l~Ps~eEq~~v~~lv~kI~~~ld~li----v~pg~~e~----~L~~V~rVGs~aKgtll~ 89 (364)
T 4at7_A 20 PAPDETSFSEALLKRNQ--DLAPNSAEQASILSLVTKINNVIDNLI----VAPGTFEV----QIEEVRQVGSYKKGTMTT 89 (364)
T ss_dssp CCCCCHHHHHHHHHHHH--HHSCCHHHHHHHHHHHHHHHHHHHHHH----HCCTTCSS----CEEEEEEEHHHHHTCCCT
T ss_pred CCCChHHHHHHHHhcCC--ccCCCHHHHHHHHHHHHHHHHHHHhhh----cCCCcccc----ccceeEEeccccCCceec
Confidence 45556677777766443 589999999888888888888887644 33343211 114689999999999999
Q ss_pred CC-CceEEeecCCCCCch--hhHHHHHHHHHhcCCCceeeE-eecCCccceEEEEecC--eeeeEEeecccccccCCCCC
Q 005391 100 GA-DIDTLCVGPRHATRE--EDFFGELHQMLTEMPEVTELH-PVPDAHVPVMKFKFSG--VSIDLLYARLSLWVIPEDLD 173 (698)
Q Consensus 100 ~S-DID~lcv~P~~v~r~--edFF~~l~~~L~~~~~V~~l~-~I~~ArVPIIKf~~~G--I~iDLsfa~l~~~~iP~~ld 173 (698)
|. |+|++|++..--|.+ +.....+.+-|+....-..+. .+.+|-+= | .-.+ +.|=|.........
T Consensus 90 G~~~~dlVvl~k~lPT~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~~-I--~~~~~~v~i~It~tsp~lrk------ 160 (364)
T 4at7_A 90 GHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFE-I--SSSDATVKILITTVPPNLRK------ 160 (364)
T ss_dssp TCCEEEEEEEESSCCBHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEEE-E--ECSSCEEEEEEEECHHHHHT------
T ss_pred CCCceeEEEEecCCCCHHHHHHHHHHHHHHhhhhccccceeeccCcceEE-E--ecCCCcEEEEEEeCChhhcc------
Confidence 85 889999987776652 012234444444321111111 11111111 1 1111 22222222111111
Q ss_pred CCchhhhccchhhhhhhhcchhhHHHHHHhccCchhHHHHHHHHHHHHHHcCCCCCCCCccchHHHHHHHHHHHhhCC--
Q 005391 174 ISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYP-- 251 (698)
Q Consensus 174 l~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llR~IK~WAK~RgIysn~~G~LGG~swaILVa~vcQlyP-- 251 (698)
+.....|. ...|..+|-.+|-+.++..-... ...+.++|++|.-.++.. -++.|.+|++-+|+.+..-.-|
T Consensus 161 ~dp~~~Ld--~~~cl~aLaalRhAkWfq~na~~-s~v~~lIRIlkDlc~R~~----~w~pL~~waLELL~~~Ai~s~~~~ 233 (364)
T 4at7_A 161 LDPELHLD--IKVLQSALAAIRHARWFEENASQ-STVKVLIRLLKDLRIRFP----GFEPLTPWILDLLGHYAVMNNPTR 233 (364)
T ss_dssp CCTTTBCC--HHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCG----GGTTCCHHHHHHHHHHHHHSSTTS
T ss_pred CChhHhcC--HHHHHHHHHHhhhhHHHHhhccc-cccceeehhhHHHHHhcC----CcCCCCHHHHHHHHHHHHhcCCCC
Confidence 11111111 23577788889999988877664 667889999999666642 2357888777777766665544
Q ss_pred -CCCHHHHHHHHHHhhcc-CCCCCceeecccccCCCCccccCCCCCCCCCCCCeeEeCCCCC-CCCcccccChhhHHHHH
Q 005391 252 -NAVPSMLVSRFFRVYTQ-WRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYP-CMNSSYNVSTSTLRIMM 328 (698)
Q Consensus 252 -nas~~~LL~~FF~~Ys~-wdW~~pV~L~~i~~G~l~~~vWdP~~~~~Dr~hlMpIiTPa~P-~~Nst~NVs~sTl~vI~ 328 (698)
..+++.-+.++|+..+. +=.|.. --|.||+.+ ..++....|..-+..|.
T Consensus 234 ~~l~~~~afRRVLElLAsGillp~~----------------------------~Gi~DPCE~~~~~v~~~lt~qq~e~it 285 (364)
T 4at7_A 234 QPLALNVAYRRCLQILAAGLFLPGS----------------------------VGITDPCESGNFRVHTVMTLEQQDMVC 285 (364)
T ss_dssp SCCCHHHHHHHHHHHHHTTTTSTTB----------------------------CCCBCTTSSSCCBGGGGSCHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCcccCCC----------------------------CCCcCCCCCCCcchhccCCHHHHHHHH
Confidence 46899999999999874 222221 113466666 46666666766677777
Q ss_pred HHHHHHHHHH
Q 005391 329 DEFQRGHEIC 338 (698)
Q Consensus 329 ~EF~RA~~Il 338 (698)
.--|.+.+++
T Consensus 286 ~sAQ~~LRll 295 (364)
T 4at7_A 286 YTAQTLVRIL 295 (364)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666666655
No 13
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.17 E-value=0.0011 Score=59.57 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=32.4
Q ss_pred cEEEEeeeeccCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhc
Q 005391 84 AKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTE 129 (698)
Q Consensus 84 ~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~edFF~~l~~~L~~ 129 (698)
.+++.|||++-|-+.++||||++++.+...+. .+ +..+...|.+
T Consensus 28 ~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~~~-~~-~~~l~~~l~~ 71 (114)
T 1no5_A 28 YTVWAFGSRVKGKAKKYSDLDLAIISEEPLDF-LA-RDRLKEAFSE 71 (114)
T ss_dssp SEEEEEGGGTTTCCCTTCCEEEEEECSSCCCH-HH-HHHHHHHHHH
T ss_pred CEEEEEeccCCCCCCCCCCeEEEEEeCCCCCH-HH-HHHHHHHHHh
Confidence 58999999999999999999999988764432 12 2344555543
No 14
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=96.94 E-value=0.0022 Score=57.82 Aligned_cols=53 Identities=25% Similarity=0.197 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCCCCCCceEEeecCCC
Q 005391 48 VSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRH 112 (698)
Q Consensus 48 ~~R~~VL~~L~~ivk~wv~~v~~~~g~~e~~~~~~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~ 112 (698)
..++++++.|++++....++ ++ .-..++.|||++-|-+.++||||++++....
T Consensus 10 ~~~~~i~~~l~~~~~~l~~~------~~------~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~ 62 (111)
T 2rff_A 10 ESQIRMLKLAKEIVEEVASS------FP------NLEEVYIFGSRARGDYLDTSDIDILFVFKGI 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------CT------TEEEEEEESHHHHSCCCTTCCEEEEEEESSC
T ss_pred cCHHHHHHHHHHHHHHHHHH------cC------CccEEEEEeeeecCCCCCCCCEEEEEEecCC
Confidence 45677888777777664322 11 0147999999999999999999999887654
No 15
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=96.89 E-value=0.0012 Score=57.87 Aligned_cols=49 Identities=22% Similarity=0.256 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCCCCCCceEEeecCCCC
Q 005391 52 EVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHA 113 (698)
Q Consensus 52 ~VL~~L~~ivk~wv~~v~~~~g~~e~~~~~~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v 113 (698)
++++.+++.++...++ .|. .+++.|||++-|-+.++||||++++.+...
T Consensus 7 ~~l~~l~~~i~~l~~~----~~v---------~~v~LFGS~arG~~~~~SDiDl~V~~~~~~ 55 (98)
T 1wot_A 7 ETLRARREAVLSLCAR----HGA---------VRVRVFGSVARGEAREDSDLDLLVAFEEGR 55 (98)
T ss_dssp HHHHHHHHHHHHHHHH----HTC---------SSCEECSHHHHTCCCTTCCCEEEECCCSSC
T ss_pred HHHHHHHHHHHHHHHH----cCC---------cEEEEEccccCCCCCCCCCEEEEEEeCCCC
Confidence 6677776666553322 222 469999999999999999999988776433
No 16
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=96.88 E-value=0.09 Score=56.95 Aligned_cols=263 Identities=14% Similarity=0.187 Sum_probs=156.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCCC-h---------h---------hh---hccCcEEEEeeee
Q 005391 38 VNLYESQEEAVSREEVLGRLDQIVK---IWVKKISRAKGLN-D---------Q---------LL---QEANAKIFTFGSY 92 (698)
Q Consensus 38 ~~l~pSeEE~~~R~~VL~~L~~ivk---~wv~~v~~~~g~~-e---------~---------~~---~~~~~kI~~FGSy 92 (698)
..+||++||.+.=+.++..++..+| +|+.+-.+..+-. + . .. ...=.=|.-.|+|
T Consensus 21 ~~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG~l 100 (383)
T 4at7_B 21 SSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGLV 100 (383)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEecee
Confidence 3589999999999999998888766 4554322111100 0 0 00 0001125679999
Q ss_pred ccCCCCCC-CCceEEeecCCCCCchhhHHHHHHHHH----hcCC--CceeeEeecCCccceEEEEecCeeeeEEeecccc
Q 005391 93 RLGVHGPG-ADIDTLCVGPRHATREEDFFGELHQML----TEMP--EVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSL 165 (698)
Q Consensus 93 ~lGv~~p~-SDID~lcv~P~~v~r~edFF~~l~~~L----~~~~--~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~ 165 (698)
.-|+.+.| -+.|+|+++..--|+ .+...+.+.| +... ...-...+.+|-+=|-.-....+.|=|++.+...
T Consensus 101 aKGlLLkGd~~veLVvlck~kPT~--~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~i~i~~~~~p~~~v~I~lTSp~~ 178 (383)
T 4at7_B 101 AKGLLLKGDLDLELVLLCKEKPTT--ALLDKVADNLAIQLTTVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVV 178 (383)
T ss_dssp HHTCCCTTCCEEEEEEEESSCCBH--HHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTEEEEECSSSSCCEEEEEEECHHH
T ss_pred cccceECCCCceeEEEEeCCCCcH--HHHHHHHHHHHHHHhhccCCceEEeecCCcceEEEecCCCCCeEEEEEECCccc
Confidence 99999976 589999999887775 4665555544 3321 1222233444422211100112444455544311
Q ss_pred c----ccC--CCCCCCc-hhhhccchhhhhhhhcchhhHHHHHHhccCchhHHHHHHHHHHHHHHcCCCCCCCCccchHH
Q 005391 166 W----VIP--EDLDISQ-DSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGIN 238 (698)
Q Consensus 166 ~----~iP--~~ldl~~-d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llR~IK~WAK~RgIysn~~G~LGG~s 238 (698)
. .+. +.+...+ .+.|. -..|+.+|-.+|-+.++............++|++|.-.++.-- ++-|.+|+
T Consensus 179 re~~~~~~~~~~~~~~dp~d~Ld--~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~~----~~pL~~wa 252 (383)
T 4at7_B 179 REEMEKVLAGETLSVNDPPDVLD--RQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPT----WGPLRGWP 252 (383)
T ss_dssp HHHHHHHHTTCCCCCCCCTTBCC--HHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCGG----GGGGTTHH
T ss_pred ccchhhcccccccccCChhhcCC--HHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcCC----cCCCcHhH
Confidence 0 000 1111111 11111 1358888888998888877777777788999999997776532 35688888
Q ss_pred HHHHHHHHHhhCC--CCCHHHHHHHHHHhhccC-CCCCceeecccccCCCCccccCCCCCCCCCCCCeeEeCCCC--CCC
Q 005391 239 WALLVARICQLYP--NAVPSMLVSRFFRVYTQW-RWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAY--PCM 313 (698)
Q Consensus 239 waILVa~vcQlyP--nas~~~LL~~FF~~Ys~w-dW~~pV~L~~i~~G~l~~~vWdP~~~~~Dr~hlMpIiTPa~--P~~ 313 (698)
+=+|+.+..-. + +.+++.-+.+||+..+.- --|. .=-|.||+. |..
T Consensus 253 LELL~~~ai~s-~~~~l~~~~afRRVLEllasG~lLp~----------------------------~pgI~DPcEk~pt~ 303 (383)
T 4at7_B 253 LELLCEKSIGT-ANRPMGAGEALRRVLECLASGIVMPD----------------------------GSGIYDPCEKEATD 303 (383)
T ss_dssp HHHHHHHHHHT-SSSCCCHHHHHHHHHHHHHTTTTSTT----------------------------SCCCBCTTCSSCCB
T ss_pred HHHHHHHHhhC-CCCCCCHHHHHHHHHHHHhcCcccCC----------------------------CCCccCCCCCCCcc
Confidence 88888777643 3 357899999999998852 1111 012567777 666
Q ss_pred CcccccChhhHHHHHHHHHHHHHHH
Q 005391 314 NSSYNVSTSTLRIMMDEFQRGHEIC 338 (698)
Q Consensus 314 Nst~NVs~sTl~vI~~EF~RA~~Il 338 (698)
|.+ ..+....+.|..+-|.+.+++
T Consensus 304 ~~~-~lt~qq~e~it~sAQ~~LR~~ 327 (383)
T 4at7_B 304 AIG-HLDRQQREDITQSAQHALRLA 327 (383)
T ss_dssp TTT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred ccc-cCCHHHHHHHHHHHHHHHHHH
Confidence 665 566777788888888777765
No 17
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=96.67 E-value=0.0034 Score=54.76 Aligned_cols=28 Identities=36% Similarity=0.461 Sum_probs=26.1
Q ss_pred cEEEEeeeeccCCCCCC-CCceEEeecCC
Q 005391 84 AKIFTFGSYRLGVHGPG-ADIDTLCVGPR 111 (698)
Q Consensus 84 ~kI~~FGSy~lGv~~p~-SDID~lcv~P~ 111 (698)
.+++.|||++-|-+.++ ||||++++.+.
T Consensus 18 ~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 18 AEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp CEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred cEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 68999999999999999 99999998875
No 18
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=94.85 E-value=0.027 Score=58.09 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCCCCCCceEEeecCCC
Q 005391 45 EEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRH 112 (698)
Q Consensus 45 EE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~e~~~~~~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~ 112 (698)
-|.-.|++|.+.|+++++...+. .+ . -.+|+.||||.-|-+.++||||++++....
T Consensus 14 ~~~~~~q~Vq~eL~~ive~L~~~----~~---~-----i~~I~LFGS~ARG~~~~~SDIDilVv~~~~ 69 (272)
T 4ebj_A 14 RENLYFQGVQHTIARWVDRLREE----YA---D-----AVAILLKGSYARGDAATWSDIDFDVLVSTQ 69 (272)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH----CT---T-----EEEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred hhccChHHHHHHHHHHHHHHHHh----cC---C-----ceEEEEEeceeCCCCCCCCceEEEEEecCC
Confidence 34456777777777666553322 11 0 157999999999999999999999987643
No 19
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=94.33 E-value=0.26 Score=52.31 Aligned_cols=117 Identities=16% Similarity=0.202 Sum_probs=77.8
Q ss_pred cCcEEEEeeeeccCCCCCCCCceEEeecCCCCCch---hhHHHHHHHHHhcCCCceeeEeecCCccceE-EEEe------
Q 005391 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATRE---EDFFGELHQMLTEMPEVTELHPVPDAHVPVM-KFKF------ 151 (698)
Q Consensus 82 ~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~---edFF~~l~~~L~~~~~V~~l~~I~~ArVPII-Kf~~------ 151 (698)
.+.++..-||||=|--+ .+|||+|+..|.....+ ..++..+.+.|.+.+.|+++......+.-++ ++..
T Consensus 171 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g~~k~~~v~~l~~~~~~~~ 249 (335)
T 2fmp_A 171 SEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKE 249 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSEEEEEECCCCCTTCCC
T ss_pred CCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecCCceEEEEEEeCCcccccC
Confidence 35789999999999877 56999999888433210 1578888889999999988777766654443 3322
Q ss_pred -cCeeeeEEeecccccccCCCCCCCchhhhccchhhhhhhhcchhhHHHHHHhccCchhHHHHHHHHHHHHHHcCCCCCC
Q 005391 152 -SGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNV 230 (698)
Q Consensus 152 -~GI~iDLsfa~l~~~~iP~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llR~IK~WAK~RgIysn~ 230 (698)
.|+.|||.++..... .-.++-+--+ ..| .|.++.||+++|+-=|-
T Consensus 250 ~~~~rVDl~~vp~~~~------------------------------~~aLl~fTGS-~~f---nr~lR~~A~~kG~kl~e 295 (335)
T 2fmp_A 250 YPHRRIDIRLIPKDQY------------------------------YCGVLYFTGS-DIF---NKNMRAHALEKGFTINE 295 (335)
T ss_dssp CCCEEEEEEECCGGGH------------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTEEECS
T ss_pred CCceEEEEEEECHHHH------------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCcccc
Confidence 179999988754211 1112222222 223 57788999999887666
Q ss_pred CCc
Q 005391 231 AGF 233 (698)
Q Consensus 231 ~G~ 233 (698)
+|.
T Consensus 296 ~Gl 298 (335)
T 2fmp_A 296 YTI 298 (335)
T ss_dssp SCE
T ss_pred ccc
Confidence 664
No 20
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=94.08 E-value=0.055 Score=54.81 Aligned_cols=30 Identities=30% Similarity=0.501 Sum_probs=26.3
Q ss_pred cEEEEeeeeccCCCCCCCCceEEeecCCCC
Q 005391 84 AKIFTFGSYRLGVHGPGADIDTLCVGPRHA 113 (698)
Q Consensus 84 ~kI~~FGSy~lGv~~p~SDID~lcv~P~~v 113 (698)
..|+.|||+.-|-..++||||++++.....
T Consensus 32 ~~~~lfGS~arg~~~~~SDiD~~v~~~~~~ 61 (253)
T 1kny_A 32 KAIGVYGSLGRQTDGPYSDIEMMCVMSTEE 61 (253)
T ss_dssp EEEEEEHHHHHTCCCTTCCEEEEEEESSTT
T ss_pred eEEEEEccccCCCCCCCCCeeEEEEecCcc
Confidence 579999999999999999999988876543
No 21
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=92.73 E-value=0.47 Score=50.37 Aligned_cols=116 Identities=21% Similarity=0.254 Sum_probs=75.0
Q ss_pred cCcEEEEeeeeccCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeec-----CCcc-ceEEEEe---c
Q 005391 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVP-----DAHV-PVMKFKF---S 152 (698)
Q Consensus 82 ~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~edFF~~l~~~L~~~~~V~~l~~I~-----~ArV-PIIKf~~---~ 152 (698)
.+.++..-||||=|--+ .+|||+|+..|..... ..++..+.+.|.+.+.|++..... ..+. =|.++.. .
T Consensus 168 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~-~~ll~~v~~~l~~~~~i~~~l~~~~~~g~~~k~~~v~~l~~~~~~ 245 (335)
T 2bcq_A 168 SGLLCVACGSYRRGKAT-CGDVDVLITHPDGRSH-RGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRR 245 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTSSTT-TTCHHHHHHHHHHTTCEEEEEECCTTSTTCCEEEEEECCSSTTCC
T ss_pred CCcEEEEccccccCCCC-CCCeEEEEecCCchhh-hhHHHHHHHHHHhCCchHHHhhccccCCCCceEEEEEEccCCCCC
Confidence 35789999999999877 5699999988865543 367888888999888887754441 1222 1112221 5
Q ss_pred CeeeeEEeecccccccCCCCCCCchhhhccchhhhhhhhcchhhHHHHHHhccCchhHHHHHHHHHHHHHHcCCCCCCCC
Q 005391 153 GVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAG 232 (698)
Q Consensus 153 GI~iDLsfa~l~~~~iP~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llR~IK~WAK~RgIysn~~G 232 (698)
|+.|||.++..... .-.++-+--+ ..| .|.++.||+++|+-=|-.|
T Consensus 246 ~~rVDl~~vp~~~~------------------------------g~ALl~fTGS-~~f---nr~lR~~A~~~G~kL~e~G 291 (335)
T 2bcq_A 246 HRRLDIIVVPYSEF------------------------------ACALLYFTGS-AHF---NRSMRALAKTKGMSLSEHA 291 (335)
T ss_dssp CEEEEEEECCGGGH------------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTCEECSSC
T ss_pred ceEEEEEEECHHHH------------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCCccccc
Confidence 78999988654211 1112222222 222 5788999999988767676
Q ss_pred c
Q 005391 233 F 233 (698)
Q Consensus 233 ~ 233 (698)
.
T Consensus 292 l 292 (335)
T 2bcq_A 292 L 292 (335)
T ss_dssp E
T ss_pred c
Confidence 4
No 22
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=90.58 E-value=0.29 Score=47.60 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=73.4
Q ss_pred hhhhhccCcEEEEeeeeccCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhc--CCCce-eeEeecCCccceEEEEe-
Q 005391 76 DQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTE--MPEVT-ELHPVPDAHVPVMKFKF- 151 (698)
Q Consensus 76 e~~~~~~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~edFF~~l~~~L~~--~~~V~-~l~~I~~ArVPIIKf~~- 151 (698)
.++++..++++..-||||=|-.+-+ |||+|+..|. ...+.+.|.+ .+.++ ++..-.+.++-+ ++..
T Consensus 24 ~~~ik~~g~~v~iaGS~RRgket~g-DiDiLit~~~--------~~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~~~ 93 (174)
T 1jaj_A 24 GQLIKILSKNIVAVGSLRREEKMLN-DVDLLIIVPE--------KKLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIEWE 93 (174)
T ss_dssp TEEEEECTTTEEEEEHHHHTCSEEC-CEEEEEEESS--------HHHHHTSSSEEEESSCEEEEEEETTTEEEE-EEESS
T ss_pred cccccCCCcEEEEeccccCCCCCCC-CEEEEEecCC--------HHHHHHHHHhccCCceeHhHeecCCCeEEE-EeCCC
Confidence 3444456888999999999987754 9999888774 1345556677 77777 665555555433 3333
Q ss_pred -cCeeeeEEeecccccccCCCCCCCchhhhccchhhhhhhhcchhhHHHHHHhccCchhHHHHHHHHHHHHHHcCCCCCC
Q 005391 152 -SGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNV 230 (698)
Q Consensus 152 -~GI~iDLsfa~l~~~~iP~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llR~IK~WAK~RgIysn~ 230 (698)
.|+.|||.++..... .-.++.+--+ ..| .+.++.||+++|+-=|-
T Consensus 94 ~~~~rVDl~~vp~~~f------------------------------g~ALl~fTGS-k~h---n~~lR~~A~~kG~~L~e 139 (174)
T 1jaj_A 94 KKTYQLDLFTALAEEK------------------------------PYAIFHFTGP-VSY---LIRIRAALKKKNYKLNQ 139 (174)
T ss_dssp SCCEEEEEEEEETTCH------------------------------HHHHHHHHSC-HHH---HHHHHHHHHHTTEEEET
T ss_pred CCceEEEEEEeCHHHH------------------------------HHHHHHhHCC-HHH---HHHHHHHHHHcCCCcCc
Confidence 689999998764311 1112222222 223 47788999999886666
Q ss_pred CCc
Q 005391 231 AGF 233 (698)
Q Consensus 231 ~G~ 233 (698)
.|.
T Consensus 140 ~Gl 142 (174)
T 1jaj_A 140 YGL 142 (174)
T ss_dssp TEE
T ss_pred ccc
Confidence 664
No 23
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=89.57 E-value=1.3 Score=47.54 Aligned_cols=52 Identities=21% Similarity=0.283 Sum_probs=41.5
Q ss_pred cCcEEEEeeeeccCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCcee
Q 005391 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTE 135 (698)
Q Consensus 82 ~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~edFF~~l~~~L~~~~~V~~ 135 (698)
.+.++..-||||=|--+ .+|||+|+..|..... ..++..+.+.|.+.+.|+.
T Consensus 175 ~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~-~~ll~~v~~~L~~~~~i~~ 226 (360)
T 2ihm_A 175 PGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQE-VGLLPKVMSCLQSQGLVLY 226 (360)
T ss_dssp TTCEEEECHHHHTTCSE-ESEEEEEEECSSTTTT-TTHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEccccccCCCc-cCCeEEEEecCChhhh-hhHHHHHHHHHHhCCCeee
Confidence 35789999999999877 5699999988865433 3688888889988887763
No 24
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=88.28 E-value=1.6 Score=45.56 Aligned_cols=101 Identities=10% Similarity=0.159 Sum_probs=55.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEEEeeeeccCCCCCCCCceEEeecCCCCC---
Q 005391 38 VNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHAT--- 114 (698)
Q Consensus 38 ~~l~pSeEE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~e~~~~~~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~--- 114 (698)
.|+.|.--..+..++.+++|.+.+++ .+. =--|+.+||+..|-...-||||++++......
T Consensus 12 ~~~~~~~~~m~~~~e~l~~I~~~~~~-----------d~~-----i~av~l~GS~~~~~~D~~SD~Di~~vV~~~~~~~f 75 (287)
T 3jz0_A 12 SGLVPRGSHMLKQKELIANVKNLTES-----------DER-----ITACMMYGSFTKGEGDQYSDIEFYIFLKHSITSNF 75 (287)
T ss_dssp ----------CHHHHHHHHHHHHHHH-----------CTT-----EEEEEECSGGGTTCCCTTCCEEEEEEECGGGTTTC
T ss_pred cCcCCCCCCccCHHHHHHHHHHHHhc-----------CCC-----EEEEEEECCccCCCCCCccceeEEEEEcCcchhhh
Confidence 35556555566777777777776653 111 13589999999999999999999887643111
Q ss_pred chhhHHHHHHHHHhcCCCceeeEeecCCccceEEEEe-cCeeeeEEeeccc
Q 005391 115 REEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKF-SGVSIDLLYARLS 164 (698)
Q Consensus 115 r~edFF~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~-~GI~iDLsfa~l~ 164 (698)
.+..+...|..++- ..+..++- .++-| +|+.|||.|..+.
T Consensus 76 ~~~~Wl~~fG~~~~---------~f~~~~~~-~l~lF~Dg~riDl~l~~~~ 116 (287)
T 3jz0_A 76 DSSNWLFDVAPYLM---------LYKNEYGT-EVVIFDNLIRGEFHFLSEK 116 (287)
T ss_dssp CHHHHHHHHCCEEE---------EEECTTSC-EEEEETTSCEEEEEEEEGG
T ss_pred hhHHHHHHhhhhhe---------Eeecccce-EEEEecCCcEEEEEEeeHH
Confidence 11123333321111 11222332 23444 7999999998875
No 25
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=85.90 E-value=4.1 Score=43.95 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=39.3
Q ss_pred cCcEEEEeeeeccCCCCCCCCceEEeecCCCCCch-hhHHHHHHHHHhcCCCcee
Q 005391 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATRE-EDFFGELHQMLTEMPEVTE 135 (698)
Q Consensus 82 ~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~-edFF~~l~~~L~~~~~V~~ 135 (698)
.+.++..-||||=|--+- .|||+|+..|...... ..++..+.+.|.+.+.|+.
T Consensus 195 ~~~~v~i~GSyRRgket~-gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i~~ 248 (381)
T 1jms_A 195 PDALVTMTGGFRRGKMTG-HDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLY 248 (381)
T ss_dssp TTCEEEECHHHHTTCSCB-SSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEccccccCCCCc-CCeEEEEeCCCccccchhhHHHHHHHHHHhCCCccc
Confidence 357899999999998774 5999998888654211 1267788888888777743
No 26
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=83.98 E-value=5.5 Score=44.86 Aligned_cols=107 Identities=17% Similarity=0.148 Sum_probs=70.8
Q ss_pred CcEEEEeeeeccCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCccceEEEEecCeeeeEEeec
Q 005391 83 NAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYAR 162 (698)
Q Consensus 83 ~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~edFF~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~ 162 (698)
..++..-||||=|--+- .|||+|+..|.. ..+.+.|.+.+.|+++....+.++-+ + .-.|+.|||.++.
T Consensus 180 ~~~~~~~Gs~RRgke~~-gDiD~li~~~~~--------~~v~~~l~~~~~~~~~~~~g~~k~~~-~-~~~~~rvDl~~~~ 248 (575)
T 3b0x_A 180 VERAELCGSARRYKDTV-GDLDFLVASREG--------ERAVEGFVRLPQVKEVYAKGKERATV-F-LKNGLQVDLRVVP 248 (575)
T ss_dssp CCEEEECHHHHTTCSEE-SSEEEEEECSSH--------HHHHHHHHTSTTEEEEEEECSSEEEE-E-ETTSCEEEEEEEC
T ss_pred CcEEEEccccccCCCcc-CCeEEEEeCCCH--------HHHHHHHHhCcchhhHhhcCCCceEE-E-ccCCcEEEEEEEC
Confidence 57899999999988764 499998887742 23556677788888766555555333 1 1268999999875
Q ss_pred ccccccCCCCCCCchhhhccchhhhhhhhcchhhHHHHHHhccCchhHHHHHHHHHHHHHHcCCCCCCCCcc
Q 005391 163 LSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFL 234 (698)
Q Consensus 163 l~~~~iP~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llR~IK~WAK~RgIysn~~G~L 234 (698)
...+ .-.++.+--+ ..| .|.++.||++||+-=|-+|..
T Consensus 249 ~~~~------------------------------~~al~~~TGs-~~~---n~~lR~~A~~~g~~l~~~gl~ 286 (575)
T 3b0x_A 249 PESY------------------------------GAGLQYLTGS-AAH---SIRLRALAQEKGLKLSEYGVF 286 (575)
T ss_dssp GGGH------------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTCEEETTEEE
T ss_pred HHHH------------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCCcchhhcc
Confidence 4211 1112222222 222 578899999999887777754
No 27
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=71.60 E-value=5.5 Score=43.60 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=36.4
Q ss_pred cCcEEEEeeeeccCCCCCCCCceEEeecCCC-CC-------chhhHHHHHHHHHhc
Q 005391 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRH-AT-------REEDFFGELHQMLTE 129 (698)
Q Consensus 82 ~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~-v~-------r~edFF~~l~~~L~~ 129 (698)
.+.-|..+|||.=|=-.++||||++++.+.. .+ ....||..|.+.+.+
T Consensus 153 ~~~aviamGk~Gr~EL~~~SDiDli~l~~~~~~~~~~~~~~~~~~~f~rla~~l~~ 208 (440)
T 1v4a_A 153 QPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIK 208 (440)
T ss_dssp CCCEEEECHHHHTTCCCSSCCEEEEEEECC--------CCSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccccccCcCCCCCcceEEEeCCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 4678999999999999999999999997643 11 113688888776654
No 28
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=59.83 E-value=19 Score=40.18 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=36.7
Q ss_pred cCcEEEEeeeeccCCCCCCCCceEEeecCCCCC---------chhhHHHHHHHHHhc
Q 005391 82 ANAKIFTFGSYRLGVHGPGADIDTLCVGPRHAT---------REEDFFGELHQMLTE 129 (698)
Q Consensus 82 ~~~kI~~FGSy~lGv~~p~SDID~lcv~P~~v~---------r~edFF~~l~~~L~~ 129 (698)
.+.-|.-+|++.=+=-..+||||++++.+.... ....||..+.+.+.+
T Consensus 233 ~~~aviamGklGg~EL~~~SDiDlifv~~~~~~~~t~g~~~~~~~~~f~rlaq~li~ 289 (498)
T 3k7d_A 233 RGFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMH 289 (498)
T ss_dssp CSEEEEEEHHHHTTCCCTTCCEEEEEEECCCTTCBBSSSSCCBHHHHHHHHHHHHHH
T ss_pred CCEEEEeeccccccccCcccccceeeeecCcccccccccccchHHHHHHHHHHHHHH
Confidence 467899999999999999999999998764311 113688887776654
No 29
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=53.61 E-value=44 Score=31.85 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=43.8
Q ss_pred ccCcEEEEeeeecc---CCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcc--ceEEEEecCee
Q 005391 81 EANAKIFTFGSYRL---GVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHV--PVMKFKFSGVS 155 (698)
Q Consensus 81 ~~~~kI~~FGSy~l---Gv~~p~SDID~lcv~P~~v~r~edFF~~l~~~L~~~~~V~~l~~I~~ArV--PIIKf~~~GI~ 155 (698)
+.+..=...|||++ |+-.+.-|||+++ .+ ++ ...+.+.|.+. +......-.+... -...+.+.|+.
T Consensus 31 ~~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i-~~------~d-a~~~~~~L~~~-g~~~~~~~~~~~~~~~f~~~~i~~v~ 101 (169)
T 2fcl_A 31 NEXVNWVVTGSLSFALQGVPVEVHDIDIQT-DE------EG-AYEIERIFSEF-VSXXVRFSSTEXICSHFGELIIDGIX 101 (169)
T ss_dssp TSSCCEEEEHHHHHHHTTCCCCCCSEEEEE-CH------HH-HHHHHHHTGGG-EEEEEEEEECSSEEEEEEEEEETTEE
T ss_pred hcCCCEEEeHHHHHHHcCCCCCCCccEEEe-cc------cC-HHHHHHHHHHH-hhcccCCCccccccceeeEEeeCCEE
Confidence 34677889999987 5556888999776 11 12 35667777753 1122212222221 13456668999
Q ss_pred eeEEee
Q 005391 156 IDLLYA 161 (698)
Q Consensus 156 iDLsfa 161 (698)
|||...
T Consensus 102 VDlm~~ 107 (169)
T 2fcl_A 102 VEIMGD 107 (169)
T ss_dssp EEEEEE
T ss_pred EEeeec
Confidence 999964
No 30
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=48.35 E-value=24 Score=36.50 Aligned_cols=75 Identities=16% Similarity=0.029 Sum_probs=35.2
Q ss_pred EEEEeeeeccCC--CCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeec--------CCccceEEEEe-cC
Q 005391 85 KIFTFGSYRLGV--HGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVP--------DAHVPVMKFKF-SG 153 (698)
Q Consensus 85 kI~~FGSy~lGv--~~p~SDID~lcv~P~~v~r~edFF~~l~~~L~~~~~V~~l~~I~--------~ArVPIIKf~~-~G 153 (698)
-|+.-||+..+- .-.-||+|+++++... +.|... ...|.+-..+-.++.-. .-.-|..-+.| +|
T Consensus 25 Av~l~GSr~n~~~~~D~fSDyDi~~vv~d~----~~~~~~-~~wl~~fg~~l~~~~~e~~~~~~~~~~~~~~~l~lf~dg 99 (294)
T 2pbe_A 25 LVTLEGSRTNRNIPPDNFQDYDISYFVTDV----ESFKEN-DQWLEIFGKRIMMQKPEDMELFPPELGNWFSYIILFEDG 99 (294)
T ss_dssp EEEEC------------CCCEEEEEEESCH----HHHHTC-SGGGGGGCCEEEEECTTSCSSSCCCSTTCEEEEEEETTS
T ss_pred EEEEecCCCCCCCCCCCcccceEEEEEcCc----hHhhhh-HHHHHHHhhHHhhccccccccCcccCCCceeEEEEecCC
Confidence 488999998855 7788999999988643 133321 11222222222222111 11223343444 79
Q ss_pred eeeeEEeeccc
Q 005391 154 VSIDLLYARLS 164 (698)
Q Consensus 154 I~iDLsfa~l~ 164 (698)
+.|||.|..+.
T Consensus 100 ~rIDl~~~~~~ 110 (294)
T 2pbe_A 100 NKLDLTLIPIR 110 (294)
T ss_dssp CEEEEEEEEGG
T ss_pred cEEEEEEecHH
Confidence 99999999875
No 31
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=42.05 E-value=39 Score=38.10 Aligned_cols=94 Identities=19% Similarity=0.227 Sum_probs=58.1
Q ss_pred EEEeeeeccCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCccceEEEEecCeeeeEEeecccc
Q 005391 86 IFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSL 165 (698)
Q Consensus 86 I~~FGSy~lGv~~p~SDID~lcv~P~~v~r~edFF~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~ 165 (698)
+..-||||=|--+-+ |||+|+.. . . +.. |.+.+.|+ .-.+.++-+ ++ .|+.|||.++....
T Consensus 182 ~~~~Gs~RR~~e~~g-DiD~li~~-~---~-~~v-------l~~~~~v~---~~g~~k~~~-~~--~~~~vDl~~~~~~~ 242 (578)
T 2w9m_A 182 PAPAGDVRRGLETVR-AAELTVTG-T---P-DDV-------LARLPELT---VQGDGVLSG-DY--EGVPVEIACAPAEA 242 (578)
T ss_dssp CEECHHHHHTCSEES-SEEEEEES-C---H-HHH-------HHHCTTCE---EC---CEEE-EE--TTEEEEEEEECTTT
T ss_pred CEEecccccCCCccC-CEEEEEec-C---h-HHH-------HhcCccce---ecCCceEEE-EE--CCEEEEEEEECHHH
Confidence 889999999987654 99988876 2 1 121 55567765 222334322 23 89999999876421
Q ss_pred cccCCCCCCCchhhhccchhhhhhhhcchhhHHHHHHhccCchhHHHHH-HHHHHHHHHcCCCCCCCCcc
Q 005391 166 WVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTL-RCMRFWAKRRGVYSNVAGFL 234 (698)
Q Consensus 166 ~~iP~~ldl~~d~lL~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~ll-R~IK~WAK~RgIysn~~G~L 234 (698)
+ .-.++.+-- .-. |.++.||++||+-=|-+|..
T Consensus 243 ~------------------------------~~al~~~TG------~~n~~~lr~~A~~~g~~l~~~gl~ 276 (578)
T 2w9m_A 243 R------------------------------GALDLLRSG------EHFAGQVQAAAQARGFTLTAGGLS 276 (578)
T ss_dssp H------------------------------HHHHHHTSC------HHHHHHHHHHHHTTTCEEETTEEE
T ss_pred H------------------------------HHHHHHHhh------hhHHHHHHHHHHHcCCCcChhhcc
Confidence 1 111222222 124 78899999999877777754
Done!