BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005392
(698 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297737338|emb|CBI26539.3| unnamed protein product [Vitis vinifera]
Length = 868
Score = 1128 bits (2917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/710 (77%), Positives = 616/710 (86%), Gaps = 12/710 (1%)
Query: 1 MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR 60
+L+PSSGKRA+DTVVAGILHDVVDD CESL S+EEEFGD+VAKLVAGVSRLSYINQLLRR
Sbjct: 159 VLVPSSGKRAIDTVVAGILHDVVDDTCESLHSVEEEFGDDVAKLVAGVSRLSYINQLLRR 218
Query: 61 HRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQ 120
HRRINVNQG LGHEEAN+LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP KA+AVAQ
Sbjct: 219 HRRINVNQGILGHEEANNLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPLPKAQAVAQ 278
Query: 121 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITT 180
ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ F +MRADLASMWSP NR G RR
Sbjct: 279 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQTFLQMRADLASMWSPSNRSGNPRRTAA 338
Query: 181 IVSSP-PLDER-TASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSS 238
SSP PL+E+ A D E D V SMKDLLEAV+PFDIL DRRKR FL++L K S
Sbjct: 339 KDSSPVPLNEKEIAFDYEGSLAVDADVTSMKDLLEAVLPFDILLDRRKRINFLNNLGKCS 398
Query: 239 EAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRR 298
+ QKK +VV+DAG+AL SLV CEEALE+ELLISTSY+PGMEVTLSSRLKSLYSI+SKM+R
Sbjct: 399 KTQKKPQVVRDAGLALASLVLCEEALERELLISTSYVPGMEVTLSSRLKSLYSIYSKMKR 458
Query: 299 KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKP 358
KDVGI+K+YDARALRVVVGDKNGTL GPA+QCCY+LL I+HRLW PIDGEFDDYIVNPKP
Sbjct: 459 KDVGINKIYDARALRVVVGDKNGTLCGPAVQCCYNLLSIIHRLWTPIDGEFDDYIVNPKP 518
Query: 359 SGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIE 418
SGYQSLHTAVQGPD S LEVQIRTQ+MHEYAEHGLAAHWLYKET NKL S S +D+S+I+
Sbjct: 519 SGYQSLHTAVQGPDNSPLEVQIRTQRMHEYAEHGLAAHWLYKETENKLPSTSILDDSEIK 578
Query: 419 ASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVS 478
ASS S+D ++ N + D+FQKY SLK GHPV+RVEGS+LLAAV++RV+K GRELLVAVS
Sbjct: 579 ASSYFSEDMENQNSVGDDVFQKYGSLKAGHPVLRVEGSHLLAAVVVRVDKDGRELLVAVS 638
Query: 479 FGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYH 538
FGL ASE VADRR SFQIK WEAYARLYKK SDEWW +PGHGDWCTCLEKYTLCRDGMYH
Sbjct: 639 FGLVASEAVADRRSSFQIKRWEAYARLYKKVSDEWWFEPGHGDWCTCLEKYTLCRDGMYH 698
Query: 539 KQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVS--------RRSSDSVA 590
K+DQF RLLPTFIQ+ LTE+EESEYWAVVSA+FEGK + S+ S R SS+ ++
Sbjct: 699 KEDQFQRLLPTFIQVIDLTEQEESEYWAVVSAIFEGKQIASIESHSNSSFYKRPSSNPIS 758
Query: 591 PTSMEASINNKVRLLRTMLRWEEQLRSEASLRQ--SKLGGKANGNPDSVVPGEVVIVCWP 648
TS+EA+INNKV LLRTML+WEEQLRSEA +RQ +K+G P SVV GEVVIVCWP
Sbjct: 759 STSLEANINNKVHLLRTMLQWEEQLRSEAGMRQTKTKVGADPYSTPKSVVLGEVVIVCWP 818
Query: 649 NGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 698
+GEIMRLR+GSTAADAA +VGL+GKLVLVNGQ VLPNT+LKDGD+VEVR+
Sbjct: 819 HGEIMRLRTGSTAADAAQRVGLDGKLVLVNGQYVLPNTQLKDGDVVEVRM 868
>gi|357481159|ref|XP_003610865.1| GTP pyrophosphokinase [Medicago truncatula]
gi|355512200|gb|AES93823.1| GTP pyrophosphokinase [Medicago truncatula]
Length = 889
Score = 1053 bits (2723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/726 (71%), Positives = 587/726 (80%), Gaps = 30/726 (4%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
L+PSSGKRAV+T+VAGILHDVVDD C+SL IE EFGD+VA+LVAGVSRLSYINQLLRRH
Sbjct: 165 LVPSSGKRAVETIVAGILHDVVDDTCQSLQDIEAEFGDDVAELVAGVSRLSYINQLLRRH 224
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 121
RR+NVNQG LG EEA++LR MLLGM+DDPRVVLIKLADRLHNMRTIYALP KA+AVA+E
Sbjct: 225 RRVNVNQGVLGQEEASNLRGMLLGMIDDPRVVLIKLADRLHNMRTIYALPMHKAQAVAEE 284
Query: 122 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
TL+IWCSLASRLGLWALKAELEDLCFAVLQPQIF+ MRADLASMWSP R+G S R+
Sbjct: 285 TLIIWCSLASRLGLWALKAELEDLCFAVLQPQIFQSMRADLASMWSPSARIGSSGRLYLK 344
Query: 182 VSSPPLDERTASDDESFT-TFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEA 240
+ PL E++++ + + F+E + SMKDLLEAVVPFD+L DRRKR FL+ +A + E
Sbjct: 345 GNLIPLAEKSSTSFYNKSLAFNEGLCSMKDLLEAVVPFDVLLDRRKRANFLYSIANNVET 404
Query: 241 QKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKD 300
K KVVQDAG+AL SLV CEEALE+EL+IS SY+PGMEVTLSSRLKSLYSI+SKM+RKD
Sbjct: 405 CTKPKVVQDAGLALASLVICEEALERELIISASYVPGMEVTLSSRLKSLYSIYSKMKRKD 464
Query: 301 VGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSG 360
I KVYDARALRVVVGDKNG LHGPA+QCCYSLLDIVHRLW PIDGEFDDYI+NPKPSG
Sbjct: 465 TSIDKVYDARALRVVVGDKNGALHGPAVQCCYSLLDIVHRLWTPIDGEFDDYIINPKPSG 524
Query: 361 YQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEAS 420
YQSLHTAV+GPD S LEVQIRTQ+MHEYAEHGLAAHWLYKETGN S+ MD + +AS
Sbjct: 525 YQSLHTAVEGPDNSPLEVQIRTQRMHEYAEHGLAAHWLYKETGNPFSSVDRMDTPETDAS 584
Query: 421 SSL----------------------------SKDTDDHNPLDTDLFQKYSSLKMGHPVIR 452
SS+ SKDT+ N D L K SLK GHPV+R
Sbjct: 585 SSIDKMDAPETEASSSIDRMDTPETEASSYFSKDTEAENSSDI-LLSKNKSLKAGHPVLR 643
Query: 453 VEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDE 512
VEGS+LLAAVII VE RELLVAVSF LAAS+ VADRR FQ K WEAYARLYKK SDE
Sbjct: 644 VEGSHLLAAVIISVENEARELLVAVSFQLAASDAVADRRSFFQDKRWEAYARLYKKVSDE 703
Query: 513 WWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVF 572
WW +PGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTF+Q+ + TE+EESEYW VVSAVF
Sbjct: 704 WWFEPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFVQVINFTEQEESEYWDVVSAVF 763
Query: 573 EGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANG 632
EGK VD + S+ D V TSM+ASINNKV LLRTML WEEQLRSE ++ Q+K K +G
Sbjct: 764 EGKQVDCIASQSKLDLVPSTSMDASINNKVHLLRTMLSWEEQLRSEVNINQTKHDAKFDG 823
Query: 633 NPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGD 692
+ GEVV++CWPNGEIMRL++GS+A DAA + GLEGKLVL+NG L LPNT+LKDGD
Sbjct: 824 PRGPLNLGEVVVICWPNGEIMRLKAGSSAVDAAQRTGLEGKLVLINGHLALPNTKLKDGD 883
Query: 693 IVEVRV 698
++EVR+
Sbjct: 884 VLEVRI 889
>gi|449483240|ref|XP_004156531.1| PREDICTED: uncharacterized LOC101208449 [Cucumis sativus]
Length = 875
Score = 1047 bits (2708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/700 (73%), Positives = 587/700 (83%), Gaps = 6/700 (0%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
L+P +G RAVDTVVAGILHD+VDD C+ L SIEEEFGDEVAKLVAGVSRLSYINQLLRRH
Sbjct: 179 LVPPTGNRAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 238
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 121
RR+N+N G+LGHEEAN LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP KA+AVAQE
Sbjct: 239 RRVNLNPGSLGHEEANKLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPLPKAQAVAQE 298
Query: 122 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
TL+IWCSLASRLGLWALKAELEDLCFAVLQPQ+F K+R++LASMW P +R G SR+I+
Sbjct: 299 TLVIWCSLASRLGLWALKAELEDLCFAVLQPQMFLKLRSELASMWMPSSRAGSSRKISAR 358
Query: 182 VSSPPLDER--TASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSE 239
P LD T + T DE +MK+LLEAVVPFDIL+DRRKRT +L++L KS +
Sbjct: 359 ADFPSLDSSSSTCCHNMPITVTDE-ATNMKELLEAVVPFDILADRRKRTSYLNNLQKSID 417
Query: 240 AQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRK 299
A + KV+Q+A AL +LV CEEALE+EL+IS SY+PGMEVTLSSRLKSLYSI+SKM+RK
Sbjct: 418 ACIQPKVMQEARNALAALVVCEEALEQELIISVSYVPGMEVTLSSRLKSLYSIYSKMKRK 477
Query: 300 DVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPS 359
DV I+KVYD RALRVVVGDKNGTLHGPA+QCCYSLL VH+LW PIDGEFDDYIVNPKPS
Sbjct: 478 DVSINKVYDTRALRVVVGDKNGTLHGPAVQCCYSLLHTVHKLWAPIDGEFDDYIVNPKPS 537
Query: 360 GYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEA 419
GYQSLHTAV GPD S LEVQIRTQ+MHEYAEHGLAAHWLYKE GNK S+SS D+S+ +
Sbjct: 538 GYQSLHTAVLGPDNSPLEVQIRTQRMHEYAEHGLAAHWLYKENGNKTPSLSSKDDSERDV 597
Query: 420 SSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSF 479
S S DT+ N ++ D KY LK GHPV+RVEGS+LLAAVIIRV++ GRELLVAVSF
Sbjct: 598 SRYFS-DTEFQNSIEDD-SHKYGFLKAGHPVLRVEGSHLLAAVIIRVDEDGRELLVAVSF 655
Query: 480 GLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHK 539
GLAASE VADR SFQIK WEAYARLYKK S+EWWC+PGHGDWCTCLEKYTLCRDGMYHK
Sbjct: 656 GLAASEAVADRSSSFQIKRWEAYARLYKKVSEEWWCEPGHGDWCTCLEKYTLCRDGMYHK 715
Query: 540 QDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASIN 599
QDQFGRLLPTFIQ+ TE+EE EYWA++SA+ EGK +++ SR SS+SVA S +ASIN
Sbjct: 716 QDQFGRLLPTFIQVIDFTEQEEFEYWAIMSAISEGKQIETASSRTSSNSVASISTDASIN 775
Query: 600 NKVRLLRTMLRWEEQLRSEA-SLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 658
KVR LRTML+WEEQL EA + RQ+K GG+ S+ EVVIVCWP GEIMRLR+G
Sbjct: 776 TKVRFLRTMLQWEEQLLCEAGNFRQAKQGGEYYVCRSSITLEEVVIVCWPLGEIMRLRTG 835
Query: 659 STAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 698
STAADAA +VG EG+LVL+NG VLPNTELKDGD+VEVRV
Sbjct: 836 STAADAARRVGSEGRLVLINGLPVLPNTELKDGDVVEVRV 875
>gi|449439043|ref|XP_004137297.1| PREDICTED: uncharacterized protein LOC101208449 [Cucumis sativus]
Length = 706
Score = 1038 bits (2684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/693 (74%), Positives = 582/693 (83%), Gaps = 6/693 (0%)
Query: 9 RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQ 68
+AVDTVVAGILHD+VDD C+ L SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRR+N+N
Sbjct: 17 QAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 76
Query: 69 GTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 128
G+LGHEEAN LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP KA+AVAQETL+IWCS
Sbjct: 77 GSLGHEEANKLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPLPKAQAVAQETLVIWCS 136
Query: 129 LASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLD 188
LASRLGLWALKAELEDLCFAVLQPQ+F K+R++LASMW P +R G SR+I+ P LD
Sbjct: 137 LASRLGLWALKAELEDLCFAVLQPQMFLKLRSELASMWMPSSRAGSSRKISARADFPSLD 196
Query: 189 ER--TASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKV 246
T + T DE +MK+LLEAVVPFDIL+DRRKRT +L++L KS +A + KV
Sbjct: 197 SSSSTCCHNMPITVTDE-ATNMKELLEAVVPFDILADRRKRTSYLNNLQKSIDACIQPKV 255
Query: 247 VQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKV 306
+Q+A AL +LV CEEALE+EL+IS SY+PGMEVTLSSRLKSLYSI+SKM+RKDV I+KV
Sbjct: 256 MQEARNALAALVVCEEALEQELIISVSYVPGMEVTLSSRLKSLYSIYSKMKRKDVSINKV 315
Query: 307 YDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHT 366
YD RALRVVVGDKNGTLHGPA+QCCYSLL VH+LW PIDGEFDDYIVNPKPSGYQSLHT
Sbjct: 316 YDTRALRVVVGDKNGTLHGPAVQCCYSLLHTVHKLWAPIDGEFDDYIVNPKPSGYQSLHT 375
Query: 367 AVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKD 426
AV GPD S LEVQIRTQ+MHEYAEHGLAAHWLYKE GNK S+SS D+S+ + S S D
Sbjct: 376 AVLGPDNSPLEVQIRTQRMHEYAEHGLAAHWLYKENGNKTPSLSSKDDSERDVSRYFS-D 434
Query: 427 TDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEV 486
T+ N ++ D KY LK GHPV+RVEGS+LLAAVIIRV++ GRELLVAVSFGLAASE
Sbjct: 435 TEFQNSIEDD-SHKYGFLKAGHPVLRVEGSHLLAAVIIRVDEDGRELLVAVSFGLAASEA 493
Query: 487 VADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRL 546
VADR SFQIK WEAYARLYKK S+EWWC+PGHGDWCTCLEKYTLCRDGMYHKQDQFGRL
Sbjct: 494 VADRSSSFQIKRWEAYARLYKKVSEEWWCEPGHGDWCTCLEKYTLCRDGMYHKQDQFGRL 553
Query: 547 LPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLR 606
LPTFIQ+ TE+EE EYWA++SA+ EGK +++ SR SS+SVA S +ASIN KVR LR
Sbjct: 554 LPTFIQVIDFTEQEEFEYWAIMSAISEGKQIETASSRTSSNSVASISTDASINTKVRFLR 613
Query: 607 TMLRWEEQLRSEA-SLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAA 665
TML+WEEQL EA + RQ+K GG+ S+ EVVIVCWP GEIMRLR+GSTAADAA
Sbjct: 614 TMLQWEEQLLCEAGNFRQAKQGGEYYVCRSSITLEEVVIVCWPLGEIMRLRTGSTAADAA 673
Query: 666 MKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 698
+VG EG+LVL+NG VLPNTELKDGD+VEVRV
Sbjct: 674 RRVGSEGRLVLINGLPVLPNTELKDGDVVEVRV 706
>gi|255557973|ref|XP_002520015.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative
[Ricinus communis]
gi|223540779|gb|EEF42339.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative
[Ricinus communis]
Length = 806
Score = 1023 bits (2645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/698 (73%), Positives = 566/698 (81%), Gaps = 58/698 (8%)
Query: 1 MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR 60
ML+PS+GKRAVDTVVAGILHDVVDD ESL SIEEEFG++VAKLVAGVSRLSYINQLLRR
Sbjct: 167 MLVPSAGKRAVDTVVAGILHDVVDDTQESLQSIEEEFGEDVAKLVAGVSRLSYINQLLRR 226
Query: 61 HRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQ 120
HRR+ VNQ +LG EEAN+LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPP KA+AVAQ
Sbjct: 227 HRRVTVNQSSLGQEEANNLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPLKAQAVAQ 286
Query: 121 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITT 180
ETL IWCSLASRLGLWALKAELEDLCFAVLQ DL P + + ++ T
Sbjct: 287 ETLHIWCSLASRLGLWALKAELEDLCFAVLQ---------DLLEAVVPFDILLDRKKGTI 337
Query: 181 IVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEA 240
++S SD ++R K + D
Sbjct: 338 FLNS---------------------------------LRKTSDAQRRPKVVQD------- 357
Query: 241 QKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKD 300
AGIAL SL+ACEEALE+ELLISTSY+PGMEVTLSSRLKSLYS+++KM+RKD
Sbjct: 358 ---------AGIALASLIACEEALERELLISTSYVPGMEVTLSSRLKSLYSMYTKMKRKD 408
Query: 301 VGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSG 360
VGI KVYDARALRVVVGDKNG LHGPAIQCCYSLLDIVHRLW PIDGEFDDYIVNPKPSG
Sbjct: 409 VGIDKVYDARALRVVVGDKNGALHGPAIQCCYSLLDIVHRLWTPIDGEFDDYIVNPKPSG 468
Query: 361 YQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEAS 420
YQSLHTAVQGPD ++LEVQIRTQKMHEYAEHGLAAHWLYKETGNKL SISSMDES+ EAS
Sbjct: 469 YQSLHTAVQGPDNASLEVQIRTQKMHEYAEHGLAAHWLYKETGNKLPSISSMDESETEAS 528
Query: 421 SSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFG 480
S LSKD +DHN + D FQKY SLK+GHPV+RV+GS+LLAAVIIRV+K GRELLVAV FG
Sbjct: 529 SCLSKDFEDHNSIGEDQFQKYRSLKVGHPVLRVQGSHLLAAVIIRVDKDGRELLVAVGFG 588
Query: 481 LAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQ 540
LAASE VADRR SF K WEAYARLYKK SDEWWC+PGHGDWCTCLEKYTLCRDGMYHKQ
Sbjct: 589 LAASEAVADRRSSFPRKRWEAYARLYKKVSDEWWCEPGHGDWCTCLEKYTLCRDGMYHKQ 648
Query: 541 DQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINN 600
DQF RLLPTFIQ+ LTE+EESEYWAVVSAVFEGKPVDSV SR + DS A ++A INN
Sbjct: 649 DQFERLLPTFIQVIDLTEQEESEYWAVVSAVFEGKPVDSVASRPNLDSAASNPIDAGINN 708
Query: 601 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 660
KVRLLRTMLRWEEQLR+EASL Q K K++ DS++ EVVI+CWP+GEIMRLR+GST
Sbjct: 709 KVRLLRTMLRWEEQLRTEASLGQPKYDMKSHYTADSIILSEVVIICWPHGEIMRLRTGST 768
Query: 661 AADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 698
AADAA +VGLEGKLVLVNGQLVLP+TEL DGD+VEVRV
Sbjct: 769 AADAARRVGLEGKLVLVNGQLVLPSTELSDGDVVEVRV 806
>gi|225454821|ref|XP_002274363.1| PREDICTED: uncharacterized protein LOC100247726 [Vitis vinifera]
Length = 816
Score = 1008 bits (2607), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/708 (71%), Positives = 569/708 (80%), Gaps = 68/708 (9%)
Query: 1 MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR 60
+L+PSSGKRA+DTVVAGILHDVVDD CESL S+EEEFGD+VAKLVAGVSRLSYINQLLRR
Sbjct: 167 VLVPSSGKRAIDTVVAGILHDVVDDTCESLHSVEEEFGDDVAKLVAGVSRLSYINQLLRR 226
Query: 61 HRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQ 120
HRRINVNQG LGHEEAN+LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP KA+AVAQ
Sbjct: 227 HRRINVNQGILGHEEANNLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPLPKAQAVAQ 286
Query: 121 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITT 180
ETLLIWCSLASRLGLWALKAELEDLCFAVLQ +
Sbjct: 287 ETLLIWCSLASRLGLWALKAELEDLCFAVLQDLL-------------------------- 320
Query: 181 IVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEA 240
E VL LL+ + L++ K +K
Sbjct: 321 ----------------------EAVLPFDILLDRRKRINFLNNLGKCSK----------T 348
Query: 241 QKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKD 300
QKK +VV+DAG+AL SLV CEEALE+ELLISTSY+PGMEVTLSSRLKSLYSI+SKM+RKD
Sbjct: 349 QKKPQVVRDAGLALASLVLCEEALERELLISTSYVPGMEVTLSSRLKSLYSIYSKMKRKD 408
Query: 301 VGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSG 360
VGI+K+YDARALRVVVGDKNGTL GPA+QCCY+LL I+HRLW PIDGEFDDYIVNPKPSG
Sbjct: 409 VGINKIYDARALRVVVGDKNGTLCGPAVQCCYNLLSIIHRLWTPIDGEFDDYIVNPKPSG 468
Query: 361 YQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEAS 420
YQSLHTAVQGPD S LEVQIRTQ+MHEYAEHGLAAHWLYKET NKL S S +D+S+I+AS
Sbjct: 469 YQSLHTAVQGPDNSPLEVQIRTQRMHEYAEHGLAAHWLYKETENKLPSTSILDDSEIKAS 528
Query: 421 SSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFG 480
S S+D ++ N + D+FQKY SLK GHPV+RVEGS+LLAAV++RV+K GRELLVAVSFG
Sbjct: 529 SYFSEDMENQNSVGDDVFQKYGSLKAGHPVLRVEGSHLLAAVVVRVDKDGRELLVAVSFG 588
Query: 481 LAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQ 540
L ASE VADRR SFQIK WEAYARLYKK SDEWW +PGHGDWCTCLEKYTLCRDGMYHK+
Sbjct: 589 LVASEAVADRRSSFQIKRWEAYARLYKKVSDEWWFEPGHGDWCTCLEKYTLCRDGMYHKE 648
Query: 541 DQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVS--------RRSSDSVAPT 592
DQF RLLPTFIQ+ LTE+EESEYWAVVSA+FEGK + S+ S R SS+ ++ T
Sbjct: 649 DQFQRLLPTFIQVIDLTEQEESEYWAVVSAIFEGKQIASIESHSNSSFYKRPSSNPISST 708
Query: 593 SMEASINNKVRLLRTMLRWEEQLRSEASLRQ--SKLGGKANGNPDSVVPGEVVIVCWPNG 650
S+EA+INNKV LLRTML+WEEQLRSEA +RQ +K+G P SVV GEVVIVCWP+G
Sbjct: 709 SLEANINNKVHLLRTMLQWEEQLRSEAGMRQTKTKVGADPYSTPKSVVLGEVVIVCWPHG 768
Query: 651 EIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 698
EIMRLR+GSTAADAA +VGL+GKLVLVNGQ VLPNT+LKDGD+VEVR+
Sbjct: 769 EIMRLRTGSTAADAAQRVGLDGKLVLVNGQYVLPNTQLKDGDVVEVRM 816
>gi|356495744|ref|XP_003516733.1| PREDICTED: uncharacterized protein LOC100795418 [Glycine max]
Length = 782
Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/697 (70%), Positives = 545/697 (78%), Gaps = 62/697 (8%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
L+PSSGKRAVDTVVAGILHDVVDD C+SL IE EFGD+V KLVA VSRLSYINQLLRRH
Sbjct: 148 LVPSSGKRAVDTVVAGILHDVVDDTCQSLRDIEAEFGDDVVKLVASVSRLSYINQLLRRH 207
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 121
RR++VNQG LG EEA++LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP KA+AVA+E
Sbjct: 208 RRVSVNQGVLGQEEASNLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPLQKAQAVAEE 267
Query: 122 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
TL+IWCSLASRLGLWALKAELEDLCFAVLQ +
Sbjct: 268 TLIIWCSLASRLGLWALKAELEDLCFAVLQDLL--------------------------- 300
Query: 182 VSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQ 241
E+ FD IL DRRKR +L + + E
Sbjct: 301 --------------EAVVPFD-----------------ILLDRRKRANYLSSIGNNLETC 329
Query: 242 KKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDV 301
K KVVQDAG+AL S+V CEEALE+E++IS SY+PGME+TLSSRLKSLYS++SKM+RKD+
Sbjct: 330 TKPKVVQDAGLALASMVICEEALEREMIISASYVPGMEITLSSRLKSLYSLYSKMKRKDI 389
Query: 302 GIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGY 361
I KVYDARALRVVVGDKNGTLHGPA+QCCYSLLDIVHRLW PIDGEFDDYI+NPKPSGY
Sbjct: 390 SIDKVYDARALRVVVGDKNGTLHGPAVQCCYSLLDIVHRLWTPIDGEFDDYIINPKPSGY 449
Query: 362 QSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASS 421
QSLHTAVQGPD S LEVQIRTQ+MHE AE GLAAHWLYKETGN SI SMDE + EASS
Sbjct: 450 QSLHTAVQGPDNSPLEVQIRTQRMHECAEQGLAAHWLYKETGNPFLSIDSMDEPETEASS 509
Query: 422 SLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGL 481
SKD ++ N D L KY SLK GHPV+RVEGS+LLAA+II VE RELLVAVSFGL
Sbjct: 510 YFSKDLEEGNSSDI-LLSKYKSLKAGHPVLRVEGSHLLAAIIISVENDERELLVAVSFGL 568
Query: 482 AASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQD 541
AASE VADRR SFQIK WEAYARLYKK SDEWW +PGHGDW TCLEKYTLCRDGMYHKQD
Sbjct: 569 AASEAVADRR-SFQIKRWEAYARLYKKVSDEWWFEPGHGDWFTCLEKYTLCRDGMYHKQD 627
Query: 542 QFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNK 601
QFGRLLPTFIQ+ + TE+EESEYWAVVSAVFEG+ VD + SR D VA TS+EA INNK
Sbjct: 628 QFGRLLPTFIQVINFTEQEESEYWAVVSAVFEGRQVDWITSRSKFDLVASTSVEAGINNK 687
Query: 602 VRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTA 661
V LLRTML WEEQLRSE S Q+K K S+ GEVVI+CWP+GEI+RL++GSTA
Sbjct: 688 VNLLRTMLSWEEQLRSEVSFMQAKHDAKLYDLHGSL--GEVVIICWPHGEILRLKAGSTA 745
Query: 662 ADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 698
DAA +VGLEGKLVL+NGQLVLPNT+L+DGD+VEVR+
Sbjct: 746 TDAAQRVGLEGKLVLINGQLVLPNTKLRDGDVVEVRI 782
>gi|356538795|ref|XP_003537886.1| PREDICTED: uncharacterized protein LOC100799181 [Glycine max]
Length = 793
Score = 966 bits (2498), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/697 (69%), Positives = 549/697 (78%), Gaps = 62/697 (8%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
L+PSSGKRAVDTVVAGILHDVVDD C+SL IE EFGD+V KLVA VSRLSYINQLLRR+
Sbjct: 159 LVPSSGKRAVDTVVAGILHDVVDDTCQSLRDIEAEFGDDVVKLVASVSRLSYINQLLRRN 218
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 121
RR++VNQG LG EEA++LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP KA+AVA+E
Sbjct: 219 RRVSVNQGVLGQEEASNLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPLQKAQAVAEE 278
Query: 122 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
TL+IWCSLASRLGLWALKAELEDLCFAVLQ +
Sbjct: 279 TLIIWCSLASRLGLWALKAELEDLCFAVLQDLL--------------------------- 311
Query: 182 VSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQ 241
E+ FD IL DRRKR +L + + E
Sbjct: 312 --------------EAVVPFD-----------------ILLDRRKRANYLSSIGNNLETC 340
Query: 242 KKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDV 301
KK KVVQ+AG+AL ++V CEEALE+E++IS+SY+PGME+TLSSRLKSLYS++SKM+RKDV
Sbjct: 341 KKPKVVQEAGLALATMVICEEALEREMIISSSYVPGMEITLSSRLKSLYSLYSKMKRKDV 400
Query: 302 GIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGY 361
I KVYDARALRVVVGDKNGTLHGPA++CCYSLLDIVHRLW PIDGEFDDYI+NPKPSGY
Sbjct: 401 SIDKVYDARALRVVVGDKNGTLHGPAVRCCYSLLDIVHRLWTPIDGEFDDYIINPKPSGY 460
Query: 362 QSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASS 421
QSLHTAVQGPD S LEVQIRTQ+MHE AEHGLAAHWLYKETGN SI SMDE + EASS
Sbjct: 461 QSLHTAVQGPDNSPLEVQIRTQRMHECAEHGLAAHWLYKETGNPFLSIDSMDEPETEASS 520
Query: 422 SLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGL 481
SK+ ++ N D L KY SLK GHPV+RVEGS+LLAAVII VE RELLVAVSFGL
Sbjct: 521 YFSKNLEEGNSSDI-LSSKYKSLKAGHPVLRVEGSHLLAAVIISVENDERELLVAVSFGL 579
Query: 482 AASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQD 541
AASE VADRR SFQIK WEAYARLYKK SDEWW +PGHGDW TCLEKYTLCRDGMYHKQD
Sbjct: 580 AASEAVADRR-SFQIKRWEAYARLYKKVSDEWWFEPGHGDWFTCLEKYTLCRDGMYHKQD 638
Query: 542 QFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNK 601
QFGRLLPTFIQ+ + TE+E+SEYWAVVSAVFEG+ VD + SR D VA TS+EA I+NK
Sbjct: 639 QFGRLLPTFIQVINFTEQEKSEYWAVVSAVFEGRQVDWITSRSKFDLVASTSVEAGIDNK 698
Query: 602 VRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTA 661
V LLRTML WEEQLRSE + +Q+K K S+ GEVVI+CWP+GEI+RL++GSTA
Sbjct: 699 VNLLRTMLSWEEQLRSEVNFKQTKHDVKLYDLHGSL--GEVVIICWPHGEILRLKAGSTA 756
Query: 662 ADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 698
DAA +VGLEGKLVL+NGQLVLPNT+LKDGD+VEVR+
Sbjct: 757 TDAAQRVGLEGKLVLINGQLVLPNTKLKDGDVVEVRI 793
>gi|242066290|ref|XP_002454434.1| hypothetical protein SORBIDRAFT_04g030900 [Sorghum bicolor]
gi|241934265|gb|EES07410.1| hypothetical protein SORBIDRAFT_04g030900 [Sorghum bicolor]
Length = 878
Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/706 (64%), Positives = 559/706 (79%), Gaps = 14/706 (1%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
L+PS+G+RAV+TVVAGILHDVV D ESL SIEE+FGD+VA LV+GVS+LSYINQLLRRH
Sbjct: 178 LVPSTGERAVNTVVAGILHDVVCDTSESLKSIEEQFGDDVASLVSGVSKLSYINQLLRRH 237
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 121
R+ N TL EEAN+LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP KA AVAQE
Sbjct: 238 RQKNTGGSTLTSEEANNLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPVPKAEAVAQE 297
Query: 122 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRR--IT 179
TL +WCSLASRLG+WALKAELEDLCFAVLQPQ+F+K+R++L MWS + RR I
Sbjct: 298 TLAVWCSLASRLGVWALKAELEDLCFAVLQPQVFKKIRSELTLMWSRTGKSKNMRRSSIR 357
Query: 180 TIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSS- 238
+ + D S ++ F++ ++ +MKDLL+AV+PFDI DR++R+ FL +L +S
Sbjct: 358 NELLASMKDGHMTSINDLFSSCNQEKPNMKDLLQAVLPFDIFLDRKRRSYFLRNLNNNSG 417
Query: 239 EAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRR 298
E+ K+V DA +AL SL +CEE LE+ELLISTSYIPGMEVTLSSRLKSLYSI+ KM+R
Sbjct: 418 ESIPNPKIVDDAAVALASLASCEEELERELLISTSYIPGMEVTLSSRLKSLYSIYCKMKR 477
Query: 299 KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKP 358
KD G+ +VYDARALRV+VGDKNG +HGPA++ CYS+LDIVHRLW PIDGEFDDYI+NPK
Sbjct: 478 KDKGLRQVYDARALRVIVGDKNGAMHGPAVRSCYSILDIVHRLWTPIDGEFDDYIINPKG 537
Query: 359 SGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIE 418
SGY+SLHTAVQ D S LEVQIRTQ+MHEYAEHGLAAHWLYKE+ K++ SSM + +
Sbjct: 538 SGYRSLHTAVQASDSSPLEVQIRTQRMHEYAEHGLAAHWLYKES--KVEYRSSMSKRIRQ 595
Query: 419 ASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVS 478
++S S ++D + + D+ KYSS+K+GHPV+R+EG +LLAAVI+ ++KGG+EL+VAVS
Sbjct: 596 STSYSSSSSEDESSIQDDIPSKYSSIKVGHPVLRIEGCDLLAAVIVSIDKGGKELIVAVS 655
Query: 479 FGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYH 538
F L ASE VA+ R SFQ+K WEAYARL+KK S++WWC PGHGDW T LE+YTLC+DG++H
Sbjct: 656 FSLEASEAVAELRSSFQLKRWEAYARLHKKVSEKWWCAPGHGDWSTNLERYTLCQDGIFH 715
Query: 539 KQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRS-SDSVAPTSMEAS 597
KQDQFGRLLPTF+QI LTEEEE EYW VVSA+FEGK S+ S S +D + ++
Sbjct: 716 KQDQFGRLLPTFLQIIDLTEEEEEEYWMVVSAIFEGKETCSLPSESSYADKSSSEPPSST 775
Query: 598 -----INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 652
INNKV LLRTML+WEEQ+R ASL + LG P + EV I+ WPNG+I
Sbjct: 776 PLSDPINNKVHLLRTMLQWEEQVRRGASLAEKSLGVNTCTKP---ILREVAIIFWPNGKI 832
Query: 653 MRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 698
MR+ +GSTAADAA ++G+EGKL+ VNGQ+VLP TELKDGDIVEVRV
Sbjct: 833 MRMSTGSTAADAARRMGVEGKLLWVNGQVVLPQTELKDGDIVEVRV 878
>gi|413923562|gb|AFW63494.1| hypothetical protein ZEAMMB73_341215 [Zea mays]
Length = 877
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/709 (64%), Positives = 557/709 (78%), Gaps = 20/709 (2%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
L+PS+G+RAV+T+VAGILHDVV D ESL SIEE+FG +VA LV+GVS+LSYINQLLRRH
Sbjct: 177 LVPSTGERAVNTIVAGILHDVVCDTSESLKSIEEQFGADVASLVSGVSKLSYINQLLRRH 236
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 121
R+ N TL EEAN+LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP KA AVAQE
Sbjct: 237 RQKNTGGSTLTSEEANNLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPVPKAEAVAQE 296
Query: 122 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRR---- 177
TL +WCSLASRLG+WALKAELEDLCFAVLQPQIF+K++++L MW NR G S+
Sbjct: 297 TLAVWCSLASRLGVWALKAELEDLCFAVLQPQIFKKIQSELTLMW---NRTGKSKNMRRS 353
Query: 178 -ITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDL-A 235
I + + D S ++ F++ ++ +MKDLL+AV+PFDI DR++R+ FL +L +
Sbjct: 354 SIRNELLASMKDGNMVSINDLFSSCNQERPNMKDLLQAVLPFDIFLDRKRRSYFLSNLNS 413
Query: 236 KSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSK 295
S E+ K+V DA +AL SL +CEE LE+ELLISTSYIPGMEVTLSSRLKSLYSI+ K
Sbjct: 414 NSGESIPNPKIVDDAAVALASLASCEEELERELLISTSYIPGMEVTLSSRLKSLYSIYCK 473
Query: 296 MRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVN 355
M+RK+VGI +VYDARALRV+VGDKNG +HG A++ CYS+LDIVHRLW PIDGEFDDYI+N
Sbjct: 474 MKRKEVGIRQVYDARALRVIVGDKNGAMHGSAVRSCYSILDIVHRLWTPIDGEFDDYIIN 533
Query: 356 PKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDES 415
PK SGYQSLHTAVQ D S LEVQIRTQ+MHEYAEHGLAAHWLYKE+ K++ SSM +
Sbjct: 534 PKGSGYQSLHTAVQASDSSPLEVQIRTQRMHEYAEHGLAAHWLYKES--KVEYRSSMSKR 591
Query: 416 DIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLV 475
+++S S ++D + + D+ KYSS+K+GHPV+R+EGS+LLAAV++ ++KGG+EL+V
Sbjct: 592 IRQSTSYSSSSSEDESSVQDDIPSKYSSMKVGHPVLRIEGSHLLAAVVVSIDKGGKELIV 651
Query: 476 AVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDG 535
AVSF L ASE VA+ R SFQ+K WEAYARL+KK S++WWC PGHGDW T LE+YTLC+DG
Sbjct: 652 AVSFSLEASEAVAELRSSFQLKRWEAYARLHKKVSEKWWCAPGHGDWSTNLERYTLCQDG 711
Query: 536 MYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRS-SDSVAPTSM 594
++HKQDQFGRLLPTFIQI L EEEE EYW VVSA+FEGK S+ S S +D +
Sbjct: 712 IFHKQDQFGRLLPTFIQIIDLAEEEEEEYWMVVSAIFEGKETCSLPSESSYADKSSSEPP 771
Query: 595 EAS-----INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPN 649
++ INNKV LLRTML+WEEQ+R ASL + L + EV I+ WPN
Sbjct: 772 SSTPLSDPINNKVHLLRTMLQWEEQVRRGASLAEKSLSASIC---TKAILREVAIIFWPN 828
Query: 650 GEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 698
G+IMR+ +GSTAADAA ++G+EGKL+ VNGQLVLP TELKDGDIVEVRV
Sbjct: 829 GKIMRMSTGSTAADAARRMGVEGKLLWVNGQLVLPQTELKDGDIVEVRV 877
>gi|222623497|gb|EEE57629.1| hypothetical protein OsJ_08040 [Oryza sativa Japonica Group]
Length = 808
Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/707 (60%), Positives = 526/707 (74%), Gaps = 45/707 (6%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
L+PS+G+RA++TVVAGILHDV+DD E+L SIEE+FGD+VA LV+GVS+LSYINQLLRRH
Sbjct: 137 LVPSTGERAINTVVAGILHDVIDDTAENLKSIEEQFGDDVASLVSGVSKLSYINQLLRRH 196
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 121
R+ N TL EE YALP KA AVAQE
Sbjct: 197 RQKNTGGSTLTSEEYFS-----------------------------YALPIRKAEAVAQE 227
Query: 122 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
TL +WCSLASRLG+WALKAELEDLCFAVLQP +F+KMR++L +MW+ N+ +RR ++I
Sbjct: 228 TLAVWCSLASRLGVWALKAELEDLCFAVLQPHVFKKMRSELTTMWNSTNKTKSTRR-SSI 286
Query: 182 VSSPPL---DERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSS 238
S P D T S + F+ ++ +MKDLL+AV+PFD+L DR++R+ FL++L SS
Sbjct: 287 RSGLPASTKDVHTTSVHDFFSLSNQEKPNMKDLLQAVLPFDLLLDRKRRSYFLNNLHGSS 346
Query: 239 EAQ-KKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMR 297
E K K+V DA +AL SL ACEE LE+ELLISTSYIPGMEVTLSSRLKSLYS++ KM+
Sbjct: 347 ETSVPKPKIVDDAAVALASLAACEEELEQELLISTSYIPGMEVTLSSRLKSLYSMYCKMK 406
Query: 298 RKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPK 357
RK VGI ++YDARALRV++GDKNG LHGPA++ CYS+LDIV+RLW PIDGEFDDYI+NPK
Sbjct: 407 RKHVGIKQIYDARALRVIIGDKNGALHGPAVKNCYSVLDIVNRLWTPIDGEFDDYIINPK 466
Query: 358 PSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 417
SGYQSLHTAVQ D S LEVQIRTQ+MHEYAE+GLAAHWLYKE+ K+ S
Sbjct: 467 GSGYQSLHTAVQASDNSPLEVQIRTQRMHEYAEYGLAAHWLYKES--KVDYRSGTSNKIG 524
Query: 418 EASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAV 477
+++S S ++D N + + KYSS+KMGHPV+R+EGS LLAAVI+ ++KGG+ELLVAV
Sbjct: 525 QSTSYPSSSSEDENYIQDVMPSKYSSMKMGHPVLRIEGSQLLAAVIVSIDKGGKELLVAV 584
Query: 478 SFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMY 537
SFGL ASE VA+RR FQ+K WE YAR+YKK S++WWC PGHGDW T LEKYTLC+DG++
Sbjct: 585 SFGLEASEAVAERRSCFQLKRWETYARVYKKVSEKWWCAPGHGDWSTNLEKYTLCQDGIF 644
Query: 538 HKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGK------PVDSVVSRRSSDSVAP 591
HKQDQFGRLLPTFIQ+ LTEEEE EYW VVSA+FEGK P S R +S+ +
Sbjct: 645 HKQDQFGRLLPTFIQLIDLTEEEEEEYWMVVSAIFEGKEASSLTPDSSNTERSTSEPPSS 704
Query: 592 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 651
T + INNKV LLRTML+WEEQ+R ASL + L P + EV I+CWP G+
Sbjct: 705 TPLSDPINNKVHLLRTMLQWEEQVRRGASLVEKSLSVGTCTEP---ILREVAIICWPYGK 761
Query: 652 IMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 698
IMR+ GSTAADAA ++G+EGKL+ VNGQLVLP TELKDGDIVEVR+
Sbjct: 762 IMRMSLGSTAADAARRMGVEGKLLWVNGQLVLPQTELKDGDIVEVRM 808
>gi|218191410|gb|EEC73837.1| hypothetical protein OsI_08580 [Oryza sativa Indica Group]
Length = 847
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/707 (60%), Positives = 526/707 (74%), Gaps = 45/707 (6%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
L+PS+G+RA++TVVAGILHDV+DD E+L SIEE+FGD+VA LV+GVS+LSYINQLLRRH
Sbjct: 176 LVPSTGERAINTVVAGILHDVIDDTAENLKSIEEQFGDDVASLVSGVSKLSYINQLLRRH 235
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 121
R+ N TL EE YALP KA AVAQE
Sbjct: 236 RQKNTGGSTLTSEEYFS-----------------------------YALPIRKAEAVAQE 266
Query: 122 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
TL +WCSLASRLG+WALKAELEDLCFAVLQP +F+KMR++L +MW+ N+ +RR ++I
Sbjct: 267 TLAVWCSLASRLGVWALKAELEDLCFAVLQPHVFKKMRSELTTMWNSTNKTKSTRR-SSI 325
Query: 182 VSSPPL---DERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSS 238
S P D T S + F+ ++ +MKDLL+AV+PFD+L DR++R+ FL++L SS
Sbjct: 326 RSGLPASTKDVHTTSVHDFFSLSNQEKPNMKDLLQAVLPFDLLLDRKRRSYFLNNLHGSS 385
Query: 239 EAQ-KKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMR 297
E K K+V DA +AL SL ACEE LE+ELLISTSYIPGMEVTLSSRLKSLYS++ KM+
Sbjct: 386 ETSVPKPKIVDDAAVALASLAACEEELEQELLISTSYIPGMEVTLSSRLKSLYSMYCKMK 445
Query: 298 RKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPK 357
RK VGI ++YDARALRV++GDKNG LHGPA++ CYS+LDIV+RLW PIDGEFDDYI+NPK
Sbjct: 446 RKHVGIKQIYDARALRVIIGDKNGALHGPAVKNCYSVLDIVNRLWTPIDGEFDDYIINPK 505
Query: 358 PSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 417
SGYQSLHTAVQ D S LEVQIRTQ+MHEYAE+GLAAHWLYKE+ K+ S
Sbjct: 506 GSGYQSLHTAVQASDNSPLEVQIRTQRMHEYAEYGLAAHWLYKES--KVDYRSGTSNKIG 563
Query: 418 EASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAV 477
+++S S ++D + + + KYSS+KMGHPV+R+EGS LLAAVI+ ++KGG+ELLVAV
Sbjct: 564 QSTSYPSSSSEDESYIQDVMPSKYSSMKMGHPVLRIEGSQLLAAVIVSIDKGGKELLVAV 623
Query: 478 SFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMY 537
SFGL ASE VA+RR FQ+K WE YAR+YKK S++WWC PGHGDW T LEKYTLC+DG++
Sbjct: 624 SFGLEASEAVAERRSCFQLKRWETYARVYKKVSEKWWCAPGHGDWSTNLEKYTLCQDGIF 683
Query: 538 HKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGK------PVDSVVSRRSSDSVAP 591
HKQDQFGRLLPTFIQ+ LTEEEE EYW VVSA+FEGK P S R +S+ +
Sbjct: 684 HKQDQFGRLLPTFIQLIDLTEEEEEEYWMVVSAIFEGKEASSLTPDSSNTERSTSEPPSS 743
Query: 592 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 651
T + INNKV LLRTML+WEEQ+R ASL + L P + EV I+CWP G+
Sbjct: 744 TPLSDPINNKVHLLRTMLQWEEQVRRGASLAEKSLSVGTCTEP---ILREVAIICWPYGK 800
Query: 652 IMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 698
IMR+ GSTAADAA ++G+EGKL+ VNGQLVLP TELKDGDIVEVR+
Sbjct: 801 IMRMSLGSTAADAARRMGVEGKLLWVNGQLVLPQTELKDGDIVEVRM 847
>gi|297599793|ref|NP_001047830.2| Os02g0699400 [Oryza sativa Japonica Group]
gi|255671187|dbj|BAF09744.2| Os02g0699400 [Oryza sativa Japonica Group]
Length = 868
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/708 (59%), Positives = 530/708 (74%), Gaps = 26/708 (3%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
L+PS+G+RA++TVVAGILHDV+DD E+L SIEE+FGD+VA LV+GVS+LSYINQ++
Sbjct: 176 LVPSTGERAINTVVAGILHDVIDDTAENLKSIEEQFGDDVASLVSGVSKLSYINQVMHML 235
Query: 62 RRINVNQG-TLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQ 120
+ ++ G ++ + +LL + VL + YALP KA AVAQ
Sbjct: 236 EKTLLSADYCAGIDKKTPVEALLL----QKKYVLFYASKYFS-----YALPIRKAEAVAQ 286
Query: 121 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITT 180
ETL +WCSLASRLG+WALKAELEDLCFAVLQP +F+KMR++L +MW+ N+ +RR ++
Sbjct: 287 ETLAVWCSLASRLGVWALKAELEDLCFAVLQPHVFKKMRSELTTMWNSTNKTKSTRR-SS 345
Query: 181 IVSSPPL---DERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKS 237
I S P D T S + F+ ++ +MKDLL+AV+PFD+L DR++R+ FL++L S
Sbjct: 346 IRSGLPASTKDVHTTSVHDFFSLSNQEKPNMKDLLQAVLPFDLLLDRKRRSYFLNNLHGS 405
Query: 238 SEAQ-KKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKM 296
SE K K+V DA +AL SL ACEE LE+ELLISTSYIPGMEVTLSSRLKSLYS++ KM
Sbjct: 406 SETSVPKPKIVDDAAVALASLAACEEELEQELLISTSYIPGMEVTLSSRLKSLYSMYCKM 465
Query: 297 RRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNP 356
+RK VGI ++YDARALRV++GDKNG LHGPA++ CYS+LDIV+RLW PIDGEFDDYI+NP
Sbjct: 466 KRKHVGIKQIYDARALRVIIGDKNGALHGPAVKNCYSVLDIVNRLWTPIDGEFDDYIINP 525
Query: 357 KPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESD 416
K SGYQSLHTAVQ D S LEVQIRTQ+MHEYAE+GLAAHWLYKE+ K+ S
Sbjct: 526 KGSGYQSLHTAVQASDNSPLEVQIRTQRMHEYAEYGLAAHWLYKES--KVDYRSGTSNKI 583
Query: 417 IEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVA 476
+++S S ++D N + + KYSS+KMGHPV+R+EGS LLAAVI+ ++KGG+ELLVA
Sbjct: 584 GQSTSYPSSSSEDENYIQDVMPSKYSSMKMGHPVLRIEGSQLLAAVIVSIDKGGKELLVA 643
Query: 477 VSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGM 536
VSFGL ASE VA+RR FQ+K WE YAR+YKK S++WWC PGHGDW T LEKYTLC+DG+
Sbjct: 644 VSFGLEASEAVAERRSCFQLKRWETYARVYKKVSEKWWCAPGHGDWSTNLEKYTLCQDGI 703
Query: 537 YHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGK------PVDSVVSRRSSDSVA 590
+HKQDQFGRLLPTFIQ+ LTEEEE EYW VVSA+FEGK P S R +S+ +
Sbjct: 704 FHKQDQFGRLLPTFIQLIDLTEEEEEEYWMVVSAIFEGKEASSLTPDSSNTERSTSEPPS 763
Query: 591 PTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNG 650
T + INNKV LLRTML+WEEQ+R ASL + L P + EV I+CWP G
Sbjct: 764 STPLSDPINNKVHLLRTMLQWEEQVRRGASLVEKSLSVGTCTEP---ILREVAIICWPYG 820
Query: 651 EIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 698
+IMR+ GSTAADAA ++G+EGKL+ VNGQLVLP TELKDGDIVEVR+
Sbjct: 821 KIMRMSLGSTAADAARRMGVEGKLLWVNGQLVLPQTELKDGDIVEVRM 868
>gi|302810512|ref|XP_002986947.1| hypothetical protein SELMODRAFT_446775 [Selaginella moellendorffii]
gi|300145352|gb|EFJ12029.1| hypothetical protein SELMODRAFT_446775 [Selaginella moellendorffii]
Length = 947
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/710 (54%), Positives = 496/710 (69%), Gaps = 47/710 (6%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
L+P G +A+DTVVAGILHDVVDD SL + FGD VA LVAGVSRLSYINQLLRRH
Sbjct: 269 LVPQVGTKAIDTVVAGILHDVVDDTTRSLHDLRTSFGDNVADLVAGVSRLSYINQLLRRH 328
Query: 62 RRINVNQ-----GTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKAR 116
RR ++ L EE + LR+MLLGMV+DPRVVL+KLADRLHNMRTIYALP KAR
Sbjct: 329 RRKTAHEREEFGNGLTSEEVDSLRIMLLGMVNDPRVVLVKLADRLHNMRTIYALPAPKAR 388
Query: 117 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSR 176
AVAQETL +WCSLASRLG+W +KAELEDLCFAVL+PQ FR++R+ LA+MWS V + R
Sbjct: 389 AVAQETLAVWCSLASRLGVWTVKAELEDLCFAVLEPQTFRELRSGLAAMWSVDEEVRHYR 448
Query: 177 RITTIVSSPPLDERTAS-DDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLA 235
++T L T S +DES ++ LSMKDLL+AV+PFD+LS R+ R K L
Sbjct: 449 KMTKREKRRALIYGTESTEDESNEEIED--LSMKDLLDAVIPFDLLSGRKNRGKQKFGLP 506
Query: 236 KSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSK 295
S K+KV++D +AL +L CEEAL+KE+ IST YIPG EVTLS RLKSLYS SK
Sbjct: 507 PS---LSKSKVIEDTKVALAALSLCEEALDKEVAISTPYIPGTEVTLSGRLKSLYSTHSK 563
Query: 296 MRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVN 355
M+RK V + ++YDARALRVVVGD G LH AI+ CYSLLD+VHRLW+PI GEFDDYI+N
Sbjct: 564 MKRKGVHLDQIYDARALRVVVGDGGGKLHVAAIKGCYSLLDVVHRLWMPISGEFDDYILN 623
Query: 356 PKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDES 415
PKPSGYQSLHTAV+GPDG+ LEVQIRTQ MHE AE G AAHWLYKE+G + +
Sbjct: 624 PKPSGYQSLHTAVRGPDGAPLEVQIRTQLMHEQAESGNAAHWLYKESGAPVMT------- 676
Query: 416 DIEASSSLSKDTDDHNPLDTDLFQKYSS----LKMGHPVIRVEGSNLLAAVIIRVEKGGR 471
+A + +D+ DTDL S+ +++ +P +R+EG +L AAV+IRV+ G+
Sbjct: 677 --QALPTNGRDS------DTDLTPSSSTPSKQVQLRYPALRIEGGSLRAAVVIRVDHDGK 728
Query: 472 ELLVAVSFGLAASEVVADRRPSFQIK-CWEAYARLYKKASDEWWCQPGHGDWCTCLEKYT 530
ELLVAVS G A +V+ SF K W+ +A +Y K + WW PGHGDW TCLEKY
Sbjct: 729 ELLVAVSSGEA---IVSG--ASFDDKDRWKIFAYMYSKVAKSWWFAPGHGDWDTCLEKYV 783
Query: 531 LCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVD---SVVSRRSSD 587
LC D +YHK+DQF R LPTF+Q+ L E EY V++ V EG ++ + SS
Sbjct: 784 LCGDHIYHKKDQFHRPLPTFLQLLELDARELKEYMEVMTMVDEGIEIELQTQAGTSMSSQ 843
Query: 588 SVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCW 647
+++ S +NNKV+LLR+ML+WE+++ EA+ + +P S V EV+++ W
Sbjct: 844 NLSSGSATTRLNNKVKLLRSMLQWEKEVHFEAA--------RHPDDPSSAVLTEVLVISW 895
Query: 648 PNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVR 697
PNG+I+R+ +GST +DAA ++G++ K++ VNGQL LP EL+DGD++EVR
Sbjct: 896 PNGDIVRMPAGSTVSDAAQRMGIDNKIMYVNGQLALPLVELRDGDVIEVR 945
>gi|326495622|dbj|BAJ85907.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/506 (64%), Positives = 393/506 (77%), Gaps = 30/506 (5%)
Query: 208 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQ-KKAKVVQDAGIALTSLVACEEALEK 266
M+DLL+AV+PFD+ DRR+R+ FL++L SSEA +K K+V DA IALTSL ACEE L++
Sbjct: 1 MEDLLQAVLPFDLFLDRRRRSDFLNNLQSSSEASIRKPKIVDDAAIALTSLAACEEELQQ 60
Query: 267 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 326
ELLI+TSYIPGMEV LSSRLKSLYSI+ KM+RK VGI +VYDARALRV+VGDKNG LHGP
Sbjct: 61 ELLITTSYIPGMEVRLSSRLKSLYSIYCKMKRKHVGIRQVYDARALRVIVGDKNGALHGP 120
Query: 327 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 386
A++ CY++LDIVHRLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MH
Sbjct: 121 AVRSCYNILDIVHRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDSSPLEVQIRTQRMH 180
Query: 387 EYAEHGLAAHWLYKET--------GNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 438
EYAE+GLAAHWLYKE+ GNK++ +S + ASSS + D P
Sbjct: 181 EYAEYGLAAHWLYKESNVNTGSGMGNKIK------QSTLYASSSSEDEITDGVP------ 228
Query: 439 QKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKC 498
KY S+K+GHPV+R++G++LLAAVI+ +EKGG+ELLVAV F L ASE VA+RR SFQ+K
Sbjct: 229 SKYISMKVGHPVLRIDGNHLLAAVIVSIEKGGKELLVAVRFTLEASEDVAERRSSFQLKR 288
Query: 499 WEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTE 558
WEAYARL+KK +++WWC PGHGDW T LEKY LCRDG+YHKQDQFGRLLPTFIQI LTE
Sbjct: 289 WEAYARLHKKVTEKWWCAPGHGDWSTNLEKYILCRDGIYHKQDQFGRLLPTFIQIIDLTE 348
Query: 559 EEESEYWAVVSAVFEGKPVDSVVS------RRSSDSVAPTSMEASINNKVRLLRTMLRWE 612
EEE EYW VVSAVFEGK ++ S R +SD T + INNKV LLRTML+WE
Sbjct: 349 EEEEEYWMVVSAVFEGKETSTLTSESSNGDRSTSDLPISTPLSDPINNKVHLLRTMLQWE 408
Query: 613 EQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEG 672
EQ+R AS+ + LG K+ +P + EV I+CWP G+IMR+ +GSTAADA ++G++G
Sbjct: 409 EQVRRRASVAERSLGAKSLTDP---ILREVAIICWPYGKIMRMSTGSTAADAGRRLGVDG 465
Query: 673 KLVLVNGQLVLPNTELKDGDIVEVRV 698
KL+ VNG LVLP TELKDGDIVEVR
Sbjct: 466 KLLWVNGLLVLPQTELKDGDIVEVRT 491
>gi|357137144|ref|XP_003570161.1| PREDICTED: uncharacterized protein LOC100839209 [Brachypodium
distachyon]
Length = 812
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/497 (63%), Positives = 390/497 (78%), Gaps = 17/497 (3%)
Query: 208 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKE 267
++DLL+AV+PFD+ DR +R+ FL++L SSEA KK K+V DA +ALTSL ACEE L++E
Sbjct: 325 LQDLLQAVLPFDLFLDRGRRSDFLNNLQSSSEASKKPKIVDDAAVALTSLAACEEELQQE 384
Query: 268 LLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA 327
LLI+TSYIPGMEVTLSSRLKSLYSI+ KM RK VGI +VYDARALRV+VGDKNG LHGPA
Sbjct: 385 LLITTSYIPGMEVTLSSRLKSLYSIYCKMERKHVGIRQVYDARALRVIVGDKNGALHGPA 444
Query: 328 IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHE 387
++ CYS+LDIVHRLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MHE
Sbjct: 445 VRSCYSILDIVHRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDSSPLEVQIRTQRMHE 504
Query: 388 YAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMG 447
YAE+GLAAHWLYKE+ K+ + S M +++S S ++D + + + S+K+G
Sbjct: 505 YAEYGLAAHWLYKES--KVDTRSGMSNKISQSTSYASSSSEDESYVKDSI----PSIKVG 558
Query: 448 HPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYK 507
HPV+R++G++LLAAVI+ ++KGG+ELLVAV F ASE VA+RR SFQ++ WEAYARL+K
Sbjct: 559 HPVLRIDGNHLLAAVIVSIDKGGKELLVAVHFTHEASEDVAERRSSFQLERWEAYARLHK 618
Query: 508 KASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAV 567
K +++WWC PGHGDW T LEKYTLCRDG++HKQDQFGRLLPTFIQI LTEEEE EYW V
Sbjct: 619 KVTEKWWCAPGHGDWSTNLEKYTLCRDGIFHKQDQFGRLLPTFIQIIDLTEEEEDEYWMV 678
Query: 568 VSAVFEGKPVDSVVSRRSSDSVAPTSMEAS-------INNKVRLLRTMLRWEEQLRSEAS 620
VSAVFEGK ++ S SS++ PTS S INNKV LLRTML+WEEQ+R AS
Sbjct: 679 VSAVFEGKETSTLTS-ESSNADRPTSYPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGAS 737
Query: 621 LRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQ 680
+ LG + P + EV I+CWP G+IMR+ +GSTAADA ++G++GKL+ VNGQ
Sbjct: 738 WAERSLGARTLTEP---ILHEVAIICWPYGKIMRMSTGSTAADAGRRMGVDGKLLWVNGQ 794
Query: 681 LVLPNTELKDGDIVEVR 697
LV P TELKDGDIVEVR
Sbjct: 795 LVQPQTELKDGDIVEVR 811
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 117/150 (78%), Positives = 134/150 (89%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
L+PS+G+RA++TVVAGILHDV+DD ESL SIEE+FG++VA LV+ VS+LSYINQLLRRH
Sbjct: 177 LVPSTGERAINTVVAGILHDVIDDTTESLKSIEEQFGNDVASLVSCVSKLSYINQLLRRH 236
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 121
R+ N + TL EEAN+LR MLLGMVDDPRVVLIKL+DRLHNMRTIYALP KA AVAQE
Sbjct: 237 RQKNTDGSTLTSEEANNLRAMLLGMVDDPRVVLIKLSDRLHNMRTIYALPIPKAEAVAQE 296
Query: 122 TLLIWCSLASRLGLWALKAELEDLCFAVLQ 151
TL +WCSLASRLG+WALKAELEDLCFAVLQ
Sbjct: 297 TLAVWCSLASRLGVWALKAELEDLCFAVLQ 326
>gi|41052967|dbj|BAD07877.1| putative relA/spoT homologous protein RSH2 [Oryza sativa Japonica
Group]
Length = 772
Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust.
Identities = 321/498 (64%), Positives = 390/498 (78%), Gaps = 12/498 (2%)
Query: 208 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQ-KKAKVVQDAGIALTSLVACEEALEK 266
++DLL+AV+PFD+L DR++R+ FL++L SSE K K+V DA +AL SL ACEE LE+
Sbjct: 280 LQDLLQAVLPFDLLLDRKRRSYFLNNLHGSSETSVPKPKIVDDAAVALASLAACEEELEQ 339
Query: 267 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 326
ELLISTSYIPGMEVTLSSRLKSLYS++ KM+RK VGI ++YDARALRV++GDKNG LHGP
Sbjct: 340 ELLISTSYIPGMEVTLSSRLKSLYSMYCKMKRKHVGIKQIYDARALRVIIGDKNGALHGP 399
Query: 327 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 386
A++ CYS+LDIV+RLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MH
Sbjct: 400 AVKNCYSVLDIVNRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDNSPLEVQIRTQRMH 459
Query: 387 EYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 446
EYAE+GLAAHWLYKE+ K+ S +++S S ++D N + + KYSS+KM
Sbjct: 460 EYAEYGLAAHWLYKES--KVDYRSGTSNKIGQSTSYPSSSSEDENYIQDVMPSKYSSMKM 517
Query: 447 GHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLY 506
GHPV+R+EGS LLAAVI+ ++KGG+ELLVAVSFGL ASE VA+RR FQ+K WE YAR+Y
Sbjct: 518 GHPVLRIEGSQLLAAVIVSIDKGGKELLVAVSFGLEASEAVAERRSCFQLKRWETYARVY 577
Query: 507 KKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWA 566
KK S++WWC PGHGDW T LEKYTLC+DG++HKQDQFGRLLPTFIQ+ LTEEEE EYW
Sbjct: 578 KKVSEKWWCAPGHGDWSTNLEKYTLCQDGIFHKQDQFGRLLPTFIQLIDLTEEEEEEYWM 637
Query: 567 VVSAVFEGK------PVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEAS 620
VVSA+FEGK P S R +S+ + T + INNKV LLRTML+WEEQ+R AS
Sbjct: 638 VVSAIFEGKEASSLTPDSSNTERSTSEPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGAS 697
Query: 621 LRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQ 680
L + L P + EV I+CWP G+IMR+ GSTAADAA ++G+EGKL+ VNGQ
Sbjct: 698 LVEKSLSVGTCTEP---ILREVAIICWPYGKIMRMSLGSTAADAARRMGVEGKLLWVNGQ 754
Query: 681 LVLPNTELKDGDIVEVRV 698
LVLP TELKDGDIVEVR+
Sbjct: 755 LVLPQTELKDGDIVEVRM 772
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/150 (59%), Positives = 103/150 (68%), Gaps = 29/150 (19%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
L+PS+G+RA++TVVAGILHDV+DD E+L SIEE+FGD+VA LV+GVS+LSYINQLLRRH
Sbjct: 161 LVPSTGERAINTVVAGILHDVIDDTAENLKSIEEQFGDDVASLVSGVSKLSYINQLLRRH 220
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 121
R+ N TL EE YALP KA AVAQE
Sbjct: 221 RQKNTGGSTLTSEEYFS-----------------------------YALPIRKAEAVAQE 251
Query: 122 TLLIWCSLASRLGLWALKAELEDLCFAVLQ 151
TL +WCSLASRLG+WALKAELEDLCFAVLQ
Sbjct: 252 TLAVWCSLASRLGVWALKAELEDLCFAVLQ 281
>gi|147784360|emb|CAN72734.1| hypothetical protein VITISV_020261 [Vitis vinifera]
Length = 378
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 262/376 (69%), Positives = 302/376 (80%), Gaps = 19/376 (5%)
Query: 342 WIPIDGEFDDYIVNPKPSG---------YQSLHTAVQGPDGSALEVQIRTQKMHEYAEHG 392
W+P D +N K G SLHTAVQGPD S LEVQIRTQ+MHEYAEHG
Sbjct: 3 WVPPKSISDMMFINYKGFGKSKRGVILWQNSLHTAVQGPDNSPLEVQIRTQRMHEYAEHG 62
Query: 393 LAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIR 452
LAAHWLYKET NKL S S +D+S+I+ASS S+D ++ N + D+FQKY SLK GHPV+R
Sbjct: 63 LAAHWLYKETENKLPSTSILDDSEIKASSYFSEDMENQNSVGDDVFQKYGSLKAGHPVLR 122
Query: 453 VEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDE 512
VEGS+LLAAV++RV+K GRELLVAVSFGLAASE VADRR SFQIK WEAYARLYKK SDE
Sbjct: 123 VEGSHLLAAVVVRVDKDGRELLVAVSFGLAASEAVADRRSSFQIKRWEAYARLYKKVSDE 182
Query: 513 WWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVF 572
WW +PGHGDWCTCLEKYTLCRDGMYHK+DQF RLLPTFIQ+ LTE+EESEYWAVVSA+F
Sbjct: 183 WWFEPGHGDWCTCLEKYTLCRDGMYHKEDQFQRLLPTFIQVIDLTEQEESEYWAVVSAIF 242
Query: 573 EGKPVDSVVS--------RRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQ- 623
EGK + S+ S R SS+ ++ TS+EA+INNKV LLRTML+WEEQLRSEA +RQ
Sbjct: 243 EGKQIASIESHSNSSFYKRPSSNPISSTSLEANINNKVHLLRTMLQWEEQLRSEAGMRQT 302
Query: 624 -SKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLV 682
+K+G P SVV GEVVIVCWP+GEIMRLR+GSTAADAA +VGL+GKLVLVNGQ V
Sbjct: 303 KTKVGADPYSTPKSVVLGEVVIVCWPHGEIMRLRTGSTAADAAQRVGLDGKLVLVNGQYV 362
Query: 683 LPNTELKDGDIVEVRV 698
LPNT+LKDGD+VEVR+
Sbjct: 363 LPNTQLKDGDVVEVRM 378
>gi|168004493|ref|XP_001754946.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694050|gb|EDQ80400.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 667
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 266/497 (53%), Positives = 354/497 (71%), Gaps = 14/497 (2%)
Query: 208 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKE 267
+ +LL+AVVPF++LSDR++R + + +K KV++DA +AL +L ACEEALE+E
Sbjct: 174 LYELLQAVVPFEVLSDRKRRKWRI--VTPGPGEKKLPKVIRDAKVALAALSACEEALERE 231
Query: 268 LLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA 327
LLI+TSY+PGMEV LS RLKSLYS + KMRRK VG+ +++DARALRV+VGD +G LH A
Sbjct: 232 LLIATSYVPGMEVRLSGRLKSLYSTWCKMRRKGVGVDQIFDARALRVIVGDGDGKLHVAA 291
Query: 328 IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHE 387
++ CY+LL +VH LW P+ GEFDDYI+NPKPSGYQSLHTAVQGPDG+ LEVQIRT+ MH+
Sbjct: 292 VEGCYNLLSVVHSLWKPVGGEFDDYILNPKPSGYQSLHTAVQGPDGAPLEVQIRTRGMHD 351
Query: 388 YAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLK-- 445
+AE+G AAHWLYKE +++ + M+ +++ S D D D +F K S +
Sbjct: 352 HAEYGHAAHWLYKEGDTVVKATTPMNPP-VDSPLPDSDDASD----DEQVFAKPSPRRPV 406
Query: 446 -MGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYAR 504
MGHP +RVE LLAAVI+ V GRELLVA SF L A E VA R Q K W Y R
Sbjct: 407 YMGHPALRVEDGRLLAAVIVGVMDEGRELLVAASFALHAREAVAAGRFGNQRKRWLTYCR 466
Query: 505 LYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEY 564
LYKK +D+WW PGHGDW TCLEKYTLCRDG+YHKQDQF R LPTFIQ+ L E E+ +Y
Sbjct: 467 LYKKVADQWWFAPGHGDWSTCLEKYTLCRDGLYHKQDQFDRSLPTFIQLLDLNESEQDDY 526
Query: 565 WAVVSAVFEGKPVDSVVSR---RSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASL 621
W V+S V +G+ VD V + +D + TS +NNKV+LLR+ML+WE++LR E +
Sbjct: 527 WKVMSMVEQGEEVDIFVDNAADQHNDLGSGTSTTTRLNNKVKLLRSMLQWEQELRHEVAP 586
Query: 622 RQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQL 681
S + +P++ EV+++ WP+G+IMR+ +GSTAAD A ++G++G++V +N Q
Sbjct: 587 DGSVTILNPD-HPETAALVEVLVISWPDGDIMRMPAGSTAADLARRMGMDGEIVFINHQA 645
Query: 682 VLPNTELKDGDIVEVRV 698
LP+T+L+DGD+VE R
Sbjct: 646 ALPHTKLRDGDLVETRT 662
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 92/150 (61%), Gaps = 32/150 (21%)
Query: 2 LIP-SSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR 60
LIP GKR +DT++AGILHDV+DD S+ FGD+V+KLVAGVS+LS INQLLRR
Sbjct: 56 LIPHQQGKRVIDTIIAGILHDVIDDTDRDHQSVRLHFGDDVSKLVAGVSKLSNINQLLRR 115
Query: 61 HRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQ 120
RR V +L R + YALP AKA AVAQ
Sbjct: 116 QRRKAVT----------------------------RLFSRCN---CSYALPEAKASAVAQ 144
Query: 121 ETLLIWCSLASRLGLWALKAELEDLCFAVL 150
ETL +WCSLAS+LG WA+KAELEDLCFAVL
Sbjct: 145 ETLAVWCSLASKLGEWAVKAELEDLCFAVL 174
>gi|302792310|ref|XP_002977921.1| hypothetical protein SELMODRAFT_152204 [Selaginella moellendorffii]
gi|300154624|gb|EFJ21259.1| hypothetical protein SELMODRAFT_152204 [Selaginella moellendorffii]
Length = 370
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 232/389 (59%), Positives = 283/389 (72%), Gaps = 25/389 (6%)
Query: 82 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 141
MLLGMV+DPRVVL+KLADRLHNMRTIYALP KARAVAQETL +WCSLASRLG+W +KAE
Sbjct: 1 MLLGMVNDPRVVLVKLADRLHNMRTIYALPAPKARAVAQETLAVWCSLASRLGVWTVKAE 60
Query: 142 LEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS-DDESFTT 200
LEDLCFAVL+PQ FR++R+ LA+MWS V + R++T L T S +DES
Sbjct: 61 LEDLCFAVLEPQTFRELRSGLAAMWSVDEEVRHYRKMTKREKRRALIYGTESTEDESNEE 120
Query: 201 FDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVAC 260
++ LSMKDLL+AV+PFD+LS R+ R K L S K+KV++D +AL +L C
Sbjct: 121 IED--LSMKDLLDAVIPFDLLSGRKNRGKQKFGLPPS---LSKSKVIEDTKVALAALSLC 175
Query: 261 EEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKN 320
EEAL+KE+ IST YIPG EVTLS RLKSLYS SKM+RK V + ++YDARALRVVVGD
Sbjct: 176 EEALDKEVAISTPYIPGTEVTLSGRLKSLYSTHSKMKRKGVHLDQIYDARALRVVVGDGG 235
Query: 321 GTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQI 380
G LH AI+ CYSLLD+VHRLW+PI GEFDDYI+NPKPSGYQSLHTAV+GPDG+ LEVQI
Sbjct: 236 GKLHVAAIKGCYSLLDVVHRLWMPISGEFDDYILNPKPSGYQSLHTAVRGPDGAPLEVQI 295
Query: 381 RTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQK 440
RTQ MHE AE G AAHWLYKE+G + + D+ + S DTDL
Sbjct: 296 RTQLMHEQAESGNAAHWLYKESGAPVMT------QDLPTNGRDS---------DTDLTPS 340
Query: 441 YSS----LKMGHPVIRVEGSNLLAAVIIR 465
S+ +++ +P +R+EG +L AAV+IR
Sbjct: 341 SSTPSKQVQLRYPALRIEGGSLRAAVVIR 369
>gi|308810138|ref|XP_003082378.1| putative relA/spoT homologous protein RSH2 (ISS) [Ostreococcus
tauri]
gi|116060846|emb|CAL57324.1| putative relA/spoT homologous protein RSH2 (ISS) [Ostreococcus
tauri]
Length = 850
Score = 318 bits (814), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 247/782 (31%), Positives = 379/782 (48%), Gaps = 133/782 (17%)
Query: 3 IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR 62
+P +G ++ D VVA +LHDV+DD S ++ E FG V LV VSR+ +NQ++RR R
Sbjct: 100 LPGTGPKSRDAVVACLLHDVLDDTGCSEETLREAFGPGVYNLVVQVSRVGSMNQVIRRRR 159
Query: 63 RI---NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPP-AKARAV 118
R + + L E+ LR +LL +V DPRV LIK+ADRLHNMRT+YA+ KA +
Sbjct: 160 RDLPESDERNKLSEEDLTQLRKILLLIVRDPRVFLIKIADRLHNMRTLYAISSEQKAMDI 219
Query: 119 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP---------- 168
A ETL +WCSLA +LG+WA+K+ELEDLCFAVL+P F +R MW P
Sbjct: 220 ANETLRVWCSLAEKLGMWAIKSELEDLCFAVLEPDNFDSVREARDKMWRPIYEDEDEGLD 279
Query: 169 -RNRVGYSRRITTIVSSPPLDERTA-------SDDESFTTFDEHVLSMKDLLEAVVPFDI 220
N G+ + + P + SDD + + L+MK +E++ FD
Sbjct: 280 SENSYGWLSKSFGVSKLPFFNAEETNASGSFDSDDSPSVQYTQAQLAMKMRIESIPSFDW 339
Query: 221 LSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 280
+S R S + +++ + +L +L + ELL+ Y + +
Sbjct: 340 ISTRE---------GDSLRYDRMSELPESIAASLNTLDEVRGRIWSELLMD-GYDSDLNI 389
Query: 281 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA--IQCCYSLLDIV 338
++SSRLKS YS KM+RK + ++V DARA+R+VVGD + + G + CY+LLD++
Sbjct: 390 SMSSRLKSAYSTHQKMKRKGLPFNRVCDARAMRIVVGDPSASAGGTEREVDACYALLDLI 449
Query: 339 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 398
H+++ PI+GE+DDYI+NPK +GY+SLHTAV GPDG+ EVQ+RT+ MH+ AE G+AA W+
Sbjct: 450 HKMYRPIEGEYDDYIINPKQTGYRSLHTAVNGPDGAPFEVQVRTRSMHDSAEFGMAAQWM 509
Query: 399 YKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNL 458
YK G + S + ++L+ D D +G V V
Sbjct: 510 YK--GKATYASKSYQD------AALTDDVPD----------------VGAGVQLVSSGRR 545
Query: 459 LAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYAR----LYKKASDEWW 514
V+I + GG +LVA S+VVA + + E L ++ + E++
Sbjct: 546 SCGVVI--QSGGSRMLVAEPKQAQWSDVVAWMSEGYHKQLLEEVRESGLMLARQGTSEFF 603
Query: 515 CQPGHGDWCTCLEKYTLCRDGMYHK----------------------------------- 539
++C C+++ D + HK
Sbjct: 604 I----SEFCYCVDQRWHRVDNLGHKTRVTAEIVAKRLEMSNAEFGEEFGEEMDDIDARIR 659
Query: 540 --QDQFGRLLPTFIQITHLTEEEESEYWAVVSAV------FEGKPVDSVVSRR----SSD 587
Q G LL + L E E + A V A+ + + + +R + +
Sbjct: 660 QLQTIAGDLLNDSTASSILQETELGNWSATVQAIKKRERAMQARQSQAEREKRWRTGAEE 719
Query: 588 SVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCW 647
+ A + + AS K + + + EE + EA + S KAN +P+ V V+I+ W
Sbjct: 720 APALSILMASSALKAKPAAGIFQTEEAAKFEAEVALS--SPKAN-HPNIDVEDGVMIITW 776
Query: 648 PNG--EIMRLRSGSTAADAAM---KVGLEGKL----------VLVNGQLVLPNTELKDGD 692
+ E+ ++ GST A+ K+ E +L V VN +V P T LKDGD
Sbjct: 777 TDNYPELHSIKRGSTVAEIREIIDKIPGEKRLAPPKVESDESVNVNMVMVPPTTTLKDGD 836
Query: 693 IV 694
++
Sbjct: 837 MI 838
>gi|145353023|ref|XP_001420831.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581066|gb|ABO99124.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 890
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 183/454 (40%), Positives = 263/454 (57%), Gaps = 43/454 (9%)
Query: 3 IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR 62
+P +G R+ D V A +LHDV+DD + +++ FG V LV VSR+ +N+++RR R
Sbjct: 132 LPGNGSRSRDAVCACLLHDVLDDTACTDETLKATFGTRVYNLVIQVSRVGQMNEVMRRRR 191
Query: 63 RINVN---QGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAV 118
R + + L E+ LR +LL +V DPRV LIK+ADRLHNMRTIYA+ KA +
Sbjct: 192 RDVDDVEVKAKLSEEDLTQLRKILLLIVRDPRVFLIKIADRLHNMRTIYAISSEEKAMDI 251
Query: 119 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR------- 171
A ETL +WCSLA +LG+WA+K+ELEDLCFAVL P+ F + + W PR +
Sbjct: 252 ANETLRVWCSLAEKLGMWAIKSELEDLCFAVLDPENFDGIMTARSKAWKPRAKDMSGRAR 311
Query: 172 -VGYSRRITTIVSSPP----LD--------ERTASD--DESFTTFDEHV----LSMKDLL 212
S++ SSP LD E T SD D S + D+ L +K +
Sbjct: 312 SSSKSKQTGQTESSPSSFFGLDAVSFFGAKEETESDSFDGSGSHDDDRYAPWQLDVKHRI 371
Query: 213 EAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLI-S 271
E++ FD LS R S + + + +L++L A L ELL+
Sbjct: 372 ESIPSFDWLSTRE---------GDSLQVEGLTALPGSIAASLSTLDAIRGRLWSELLMDG 422
Query: 272 TSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA--IQ 329
+ + +++SSRLKS YS + KM+RK++ +V D RA+R+VVGD + + G I
Sbjct: 423 YTTQSDLNISVSSRLKSAYSTYMKMKRKNLPFERVCDTRAMRIVVGDASTSERGTEREID 482
Query: 330 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 389
CY+LLD++H+++ PI+GE+DDYI N K +GY+SLHTA+ GPDG+ LEVQ+RT+ MH+ A
Sbjct: 483 ACYALLDLIHKMYRPIEGEYDDYITNAKKTGYRSLHTAIGGPDGAPLEVQVRTRSMHDAA 542
Query: 390 EHGLAAHWLYKETGNKLQSISSMDESDIEASSSL 423
E G+AA W+YK K S S D S + + S+
Sbjct: 543 EFGVAAQWMYKGK-PKFASKSYQDASHTDETPSV 575
>gi|224126639|ref|XP_002319887.1| predicted protein [Populus trichocarpa]
gi|222858263|gb|EEE95810.1| predicted protein [Populus trichocarpa]
Length = 160
Score = 265 bits (677), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 124/150 (82%), Positives = 130/150 (86%)
Query: 385 MHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSL 444
MHEYAEHGLAAHWLYKETGN L SI S DES+ EASS LSKD DD ++ D FQKY SL
Sbjct: 1 MHEYAEHGLAAHWLYKETGNTLSSIGSTDESETEASSYLSKDIDDQTSMEDDQFQKYRSL 60
Query: 445 KMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYAR 504
K GHPV+RVE S+LLAAVIIRVEKGGRELLVAVSFGLAASE VADRR SFQIK WEAYAR
Sbjct: 61 KAGHPVLRVERSHLLAAVIIRVEKGGRELLVAVSFGLAASEAVADRRSSFQIKQWEAYAR 120
Query: 505 LYKKASDEWWCQPGHGDWCTCLEKYTLCRD 534
LYKK SDEWWC+PGHGDWCTCLEKYT CRD
Sbjct: 121 LYKKVSDEWWCEPGHGDWCTCLEKYTFCRD 150
>gi|424513407|emb|CCO66029.1| GTP pyrophosphokinase [Bathycoccus prasinos]
Length = 1103
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 143/380 (37%), Positives = 201/380 (52%), Gaps = 69/380 (18%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
L +LL +V DPRV LIK+A+RLHNMRT+YAL P KA VA ETL +WCS A +LG+W +
Sbjct: 362 LEELLLDVVKDPRVFLIKIAERLHNMRTLYALDPRKAETVADETLRVWCSFAEKLGIWTV 421
Query: 139 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSR--RITTIVSSPPLDERTASD-- 194
K+ELED+CFAVL+P+ F ++ W ++ G R ++ +ER +
Sbjct: 422 KSELEDMCFAVLEPERFEEIVQSRDDFWLEESKRGRFRGKNFRGTIAPELQEERNEKEKA 481
Query: 195 ---------------------------DESFTTFDEHVLSMKDLLEAVVPFDILSDR--- 224
D S+T +E +++ L+ V PF+ L+ R
Sbjct: 482 EKEALAFKTNQNKNNYVMMDALDETERDPSWTRLNETQRALRRRLQCVQPFEALTTRDGG 541
Query: 225 --RKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTL 282
R K L + +K +L +L + + + L + + + V +
Sbjct: 542 AMRIDEKVLRESPMRPATKK----------SLEALAQWQNKMFQALRLD-GVVLNVNVRM 590
Query: 283 SSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDK------NGTLHGPA--------- 327
SSRLKSL+S KM+RK+V +VYD RA R+++GD G A
Sbjct: 591 SSRLKSLFSTSEKMKRKNVPFSEVYDGRATRIIIGDPVSASTMTSDGEGSASEFFDKDKL 650
Query: 328 -------IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQI 380
I+ CY+LL+ VH++ PI+GE+DDYI PK SGY+SLHTAV G DG LEVQI
Sbjct: 651 DSGLPSEIEACYALLNAVHKINRPINGEYDDYITKPKKSGYKSLHTAVLGDDGKPLEVQI 710
Query: 381 RTQKMHEYAEHGLAAHWLYK 400
RT+ MH+ AE G+AAHWLYK
Sbjct: 711 RTRGMHDAAEWGVAAHWLYK 730
>gi|224126635|ref|XP_002319886.1| predicted protein [Populus trichocarpa]
gi|222858262|gb|EEE95809.1| predicted protein [Populus trichocarpa]
Length = 161
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 121/160 (75%), Positives = 136/160 (85%)
Query: 539 KQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASI 598
+QDQF RLLPTFIQ+ L EEEESEY AV+SAVFEGKPVDS+ SR + D+VA TSMEASI
Sbjct: 2 QQDQFERLLPTFIQVIDLMEEEESEYRAVLSAVFEGKPVDSIASRPNIDTVASTSMEASI 61
Query: 599 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 658
NNKVRLLRTML+WEEQLR EA L Q K K+ + +S GEVVIVCWP+GEI+RLRSG
Sbjct: 62 NNKVRLLRTMLQWEEQLRYEAILGQPKHERKSYSSLESGGLGEVVIVCWPHGEIIRLRSG 121
Query: 659 STAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 698
STAADAA +VG +GKLVLVNGQLVLPNTELKDGD+VEVRV
Sbjct: 122 STAADAARRVGFDGKLVLVNGQLVLPNTELKDGDVVEVRV 161
>gi|384245712|gb|EIE19205.1| hypothetical protein COCSUDRAFT_59689 [Coccomyxa subellipsoidea
C-169]
Length = 880
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 176/501 (35%), Positives = 247/501 (49%), Gaps = 94/501 (18%)
Query: 210 DLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELL 269
+L++ V+PF ++ R + +S+ Q +A AL L C L EL
Sbjct: 453 ELIQTVLPFYAVTFR----------SGASQQQSRA--------ALDVLDKCAHRLLYELK 494
Query: 270 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 329
+ G++V + R+KSLYS++ KM RK V + +V+DA ALRVVV D+NG AI+
Sbjct: 495 ME-GLATGLDVHVEGRIKSLYSMYRKMIRKSVSLREVFDALALRVVVDDQNGFKMQRAIE 553
Query: 330 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 389
CY + VHRLW PI GE DDYI NPK SGYQSLH+AV GP G +EVQIRT MHE A
Sbjct: 554 ACYEIQPAVHRLWRPIRGELDDYIFNPKASGYQSLHSAVIGPAGVPMEVQIRTSSMHEIA 613
Query: 390 EHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHP 449
E+G AAHW YK+T + + ++A +S S DT +K+G P
Sbjct: 614 EYGAAAHWAYKDTPH----------APVQAGASTSGDT----------------IKVGQP 647
Query: 450 VIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR-PSFQIKCWEAYARLYKK 508
++RV L V++ +E G +LVAV + S V+ D Q+K AY R K
Sbjct: 648 MVRVLRGKLQLGVVVDIE--GDRMLVAV---VVPSRVMPDTSIDKNQVKTVLAYVRRKK- 701
Query: 509 ASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVV 568
+W PGHGD LE Y LC+DG +H D + + P F+ +
Sbjct: 702 ----FWA-PGHGDLHLSLESYMLCKDGYWHLVDSYDQKQPPFVMPLQNVQ---------- 746
Query: 569 SAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGG 628
K D V + TS EA K RLLR ML W+ L + + + G
Sbjct: 747 ------KGFDGVKGKAKL-----TSAEA---RKARLLRRMLEWQRDLLGDPDGMEGEAGS 792
Query: 629 KANGNPDSVVP--GEVVIVCWPNGEIMRLRSGSTAADAAMKVGL-----EG------KLV 675
+ + ++ +P +V ++ P G+I ++ G+TA D + G EG +LV
Sbjct: 793 GGSSSGNAPIPQSSQVQVLIVPTGKIEQVERGTTAGDIIRQKGRIEIEEEGRRHIGPRLV 852
Query: 676 LVNGQLVLPNTELKDGDIVEV 696
VN LV +T L DGD V +
Sbjct: 853 NVNNHLVPESTPLGDGDWVSL 873
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 116/167 (69%), Gaps = 8/167 (4%)
Query: 8 KRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR----HRR 63
+R V+A +LHDVVDD SL + EFG +A++V V++LS QLLRR H
Sbjct: 96 ERVEAAVLAALLHDVVDDTRVSLEEVRAEFGPRIARIVGQVAQLSTTTQLLRRRRRTHNE 155
Query: 64 INVNQGT----LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVA 119
+ V L EE DLR M+L MVD+P V+++KLADRLHNMRT++AL P + RAVA
Sbjct: 156 MYVGAAAPAPELTREEDADLRNMILAMVDEPLVLVVKLADRLHNMRTVFALRPDRQRAVA 215
Query: 120 QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 166
ET+ +WCSLA RLG+++LK+ELEDLCFAV+ P+ +R +R++L ++W
Sbjct: 216 LETMQVWCSLAERLGMYSLKSELEDLCFAVMHPREYRALRSELDTIW 262
>gi|307103379|gb|EFN51640.1| hypothetical protein CHLNCDRAFT_59199 [Chlorella variabilis]
Length = 1290
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 179/513 (34%), Positives = 247/513 (48%), Gaps = 83/513 (16%)
Query: 206 LSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGI--ALTSLVACEEA 263
L K L++ V+PFD T F AK+ AG L L AC +
Sbjct: 745 LQAKLLIDTVLPFDA-------TTF-----------NIAKLRSGAGALRGLEVLQACAQL 786
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
L +E+ + S G+EV++ RLKSLYS F KM RK V + +VYDARALRVVV D G
Sbjct: 787 LMREI-GTESLASGLEVSVQGRLKSLYSTFRKMSRKAVPLSEVYDARALRVVVDDDGGRR 845
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
AI CY LL VHRL+ + GE DDYI PKPSGYQSLHTAV GP G +EVQ+RT
Sbjct: 846 QAEAIAACYKLLPAVHRLFRRVAGEEDDYIAQPKPSGYQSLHTAVIGPGGVPMEVQMRTS 905
Query: 384 KMHEYAEHGLAAHWLYKE---------TGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 434
MH AE+G AAHW YKE G S+ + + + S+ + + D D
Sbjct: 906 SMHSDAEYGKAAHWAYKEKPAVPAVQLPGPAAPSLPAPSSASTSSGSATTSGSVDDE--D 963
Query: 435 TDLFQKYSSLKMGHPVIRV-EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 493
D + + GHP++ + G L V++ E GGR LL AVS V D RP+
Sbjct: 964 GD-----AGIAAGHPMLHIGPGGRLRDGVVVASEFGGRRLLCAVS---QEQRAVPDARPA 1015
Query: 494 FQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQI 553
E Y L + + + QP GD +E +TLC DG YH+ D+FG LPT +
Sbjct: 1016 PA----ERYRALLRYVEERGYFQPSQGDMTAAMELFTLCSDGKYHRIDRFGHKLPTVVVP 1071
Query: 554 THLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSV-------------APTSMEASI-- 598
L EEEE+ A S++ + S + + +S+E +
Sbjct: 1072 LTLEEEEEAASAADASSLSGSAAAAVAGAAGSEGAAGGGGAGPAPEHIRSQSSVEGEMDY 1131
Query: 599 -NNKVRLLRTMLRWEEQL----RSEASLRQS----------------KLGGKANGNPDSV 637
NN++ LLR+ML W +L +E++L Q +L + G +
Sbjct: 1132 MNNRIPLLRSMLEWGRELGASIAAESALAQEAAAGNDAAAIAAWTERQLAPQVQGADGAG 1191
Query: 638 VPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGL 670
+V+++ WP G I+R+ G+TA +GL
Sbjct: 1192 A--DVMVLIWPGGRILRVPRGTTAGTVIRDLGL 1222
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 82/147 (55%), Positives = 104/147 (70%), Gaps = 2/147 (1%)
Query: 20 HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDL 79
HDV+DD G +EE FG +VA +VA VS+LS NQ++RR R+ Q T EE L
Sbjct: 433 HDVLDDTEVEAGEVEELFGAQVASMVAKVSQLSTTNQIVRRRLRVESAQPT--KEEEAQL 490
Query: 80 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 139
R M+L MV +P V+ IKLADRLHNMRT++AL P K +AVA ET +WCSLA RLG++A+K
Sbjct: 491 RNMILTMVGEPLVIAIKLADRLHNMRTVFALSPEKQQAVASETRRVWCSLAERLGMFAVK 550
Query: 140 AELEDLCFAVLQPQIFRKMRADLASMW 166
+ELEDLCFAVLQP +R +R L +W
Sbjct: 551 SELEDLCFAVLQPAEYRALRRQLDELW 577
>gi|414870236|tpg|DAA48793.1| TPA: hypothetical protein ZEAMMB73_708443 [Zea mays]
Length = 713
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 142/401 (35%), Positives = 193/401 (48%), Gaps = 106/401 (26%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
V AG+LHD +DD+ I FG VA LV GVS+LS++++L R + N T+
Sbjct: 262 VSAGLLHDTIDDSFMDYDHIFRMFGAGVADLVEGVSKLSHLSKLARDN---NTASRTV-- 316
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
EA+ L M L M D R VLIKLADRLHNM TI ALP K + A+ET+ I+ LA+RL
Sbjct: 317 -EADRLHTMFLAMADA-RAVLIKLADRLHNMNTIEALPLVKQQRFAKETMEIFVPLANRL 374
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTAS 193
G+ + K LE++CF L P+ +++ + L
Sbjct: 375 GIASWKDHLENICFKHLNPEEHKELSSKL------------------------------- 403
Query: 194 DDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIA 253
+FDE +L T LH+L KS ++D GI+
Sbjct: 404 ----LMSFDEALL---------------------TSTLHNLDKS---------LRDEGIS 429
Query: 254 LTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALR 313
SL S R KSLYSI+SKM +K++ + V+D LR
Sbjct: 430 YHSL-------------------------SGRHKSLYSIYSKMIKKNLTMDDVHDIHGLR 464
Query: 314 VVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDG 373
+VV + CY LDIVH+LW + G F DYI +PK +GY+SLHT +
Sbjct: 465 LVVETEED---------CYRALDIVHKLWPRVTGRFKDYICHPKLNGYRSLHTVIMCEGV 515
Query: 374 SALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 414
E+QIRT++MH AE+G AAHW YKE G + + M E
Sbjct: 516 HPFEIQIRTKEMHLQAEYGFAAHWRYKEGGCRHSFVLQMVE 556
>gi|159885638|dbj|BAF93196.1| putative relA/spoT homologous protein RSH2 [Hordeum vulgare]
Length = 139
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/150 (60%), Positives = 111/150 (74%), Gaps = 20/150 (13%)
Query: 323 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 382
LHGPA + CY++LDIVHRLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRT
Sbjct: 1 LHGPAARSCYNILDIVHRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDSSPLEVQIRT 60
Query: 383 QKMHEYAEHGLAAHWLYKET--------GNKLQSISSMDESDIEASSSLSKDTDDHNPLD 434
Q+MHEYAE+GLAAHWLYKE+ GNK++ +S + ASSS + D P
Sbjct: 61 QRMHEYAEYGLAAHWLYKESNVNTGSGMGNKIK------QSTLYASSSSEDEITDGVP-- 112
Query: 435 TDLFQKYSSLKMGHPVIRVEGSNLLAAVII 464
KY S+K+GHPV+R++G++LLAAVI+
Sbjct: 113 ----SKYISMKVGHPVLRIDGNHLLAAVIV 138
>gi|373487095|ref|ZP_09577764.1| RelA/SpoT family protein [Holophaga foetida DSM 6591]
gi|372009977|gb|EHP10590.1| RelA/SpoT family protein [Holophaga foetida DSM 6591]
Length = 743
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 189/390 (48%), Gaps = 112/390 (28%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
++ +LHD V+D ++ + +FG+E+A +V G++++S +++ TL
Sbjct: 93 SIACALLHDTVEDTLMTIEEVRAQFGEEIAIIVDGLTKMS----------KLDFTDRTL- 141
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
A ++R +L+ M D RV+L+KLADR+HNMRT+ ++ K R +A+ET+ ++ LA+R
Sbjct: 142 -LNAENVRKLLVAMGKDVRVLLVKLADRIHNMRTLDSMGEEKRRRIARETMELYAPLANR 200
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTA 192
LG+ ++ RADL
Sbjct: 201 LGMGSV--------------------RADL------------------------------ 210
Query: 193 SDDESFTTFD-EHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAG 251
+D SF+ + E +KD +EA + QK A ++QD
Sbjct: 211 -EDLSFSYIEPERYRELKDAIEA------------------------KHQKSASLIQDIQ 245
Query: 252 IALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARA 311
AL E+AL + G++ + R K LY I+ KM ++ G+ ++D A
Sbjct: 246 HAL------EDALHSQ---------GIKARVFFRAKHLYGIWRKMGIQEKGLDDIHDWLA 290
Query: 312 LRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP 371
R++ D+ CY+ + +VH L+ PI G F DYI PK +GYQS+HT+V P
Sbjct: 291 FRIICPDR---------ATCYTAMGLVHALYKPIPGRFKDYISLPKDNGYQSIHTSVLTP 341
Query: 372 DGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
G + EVQ RT++MH++AE G+AAHW YKE
Sbjct: 342 SGDSFEVQFRTEEMHQHAEAGIAAHWTYKE 371
>gi|352085537|ref|ZP_08953157.1| RelA/SpoT family protein [Rhodanobacter sp. 2APBS1]
gi|351681958|gb|EHA65072.1| RelA/SpoT family protein [Rhodanobacter sp. 2APBS1]
Length = 710
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 152/329 (46%), Gaps = 98/329 (29%)
Query: 76 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 135
A LR +LL +V D RVV + LA +L MR ALP + +A+A+ T I LA+RLG+
Sbjct: 111 AEGLRRLLLAIVRDLRVVFVLLARQLARMRAAPALPEGERQALARLTRDIHAPLANRLGI 170
Query: 136 WALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDD 195
W LK ELEDL FR ++ D RRI + LDER A
Sbjct: 171 WQLKWELEDLA--------FRYLQPD------------TYRRIANL-----LDERRAD-- 203
Query: 196 ESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALT 255
R F+ D
Sbjct: 204 -------------------------------REAFIRD---------------------- 210
Query: 256 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
SL + ALE G++ L+ R K +YSI+ KM+RK + +YD RA+RV+
Sbjct: 211 SLAELQRALEAA---------GIQAELAGRPKHIYSIWKKMQRKSLDFSDLYDIRAVRVL 261
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V + I CY+ L +VH LW + GEFDDYI PK +GYQSLHTAV GP G
Sbjct: 262 VDN---------ITDCYAALGVVHALWPHLPGEFDDYIARPKANGYQSLHTAVIGPQGKT 312
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
LEVQIRT MH E G+AAHW YKE G+
Sbjct: 313 LEVQIRTHAMHRANELGVAAHWRYKEGGS 341
>gi|389798715|ref|ZP_10201725.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter sp. 116-2]
gi|388444397|gb|EIM00510.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter sp. 116-2]
Length = 710
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 151/329 (45%), Gaps = 98/329 (29%)
Query: 76 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 135
A LR +LL +V D RVV + LA +L MR A P + +A+A+ T I LA+RLG+
Sbjct: 111 AEGLRRLLLAIVRDLRVVFVLLARQLARMRAAPARPEGERQALARLTRDIHAPLANRLGI 170
Query: 136 WALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDD 195
W LK ELEDL FR ++ D RRI + LDER A
Sbjct: 171 WQLKWELEDLA--------FRYLQPD------------TYRRIANL-----LDERRAD-- 203
Query: 196 ESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALT 255
R F+ D
Sbjct: 204 -------------------------------REAFIRD---------------------- 210
Query: 256 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
SL + ALE G++ L+ R K +YSI+ KM+RK + +YD RA+RV+
Sbjct: 211 SLAELQRALEAA---------GIQAELAGRPKHIYSIWKKMQRKSLDFSDLYDIRAVRVL 261
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V + I CY+ L +VH LW + GEFDDYI PK +GYQSLHTAV GP G
Sbjct: 262 VDN---------ITDCYAALGVVHALWPHLPGEFDDYIARPKANGYQSLHTAVIGPQGKT 312
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
LEVQIRT MH E G+AAHW YKE G+
Sbjct: 313 LEVQIRTHAMHRANELGVAAHWRYKEGGS 341
>gi|328948969|ref|YP_004366306.1| (p)ppGpp synthetase I SpoT/RelA [Treponema succinifaciens DSM 2489]
gi|328449293|gb|AEB15009.1| (p)ppGpp synthetase I, SpoT/RelA [Treponema succinifaciens DSM
2489]
Length = 636
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 116/394 (29%), Positives = 178/394 (45%), Gaps = 113/394 (28%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DT++AG H+++D + L IE++FG E+A + G ++++ + +N +L
Sbjct: 77 DTIIAGFFHNILDVDNDCLPEIEKKFGKEIAVICNGTAKIT----------GLKINSTSL 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A+ +R ML MVDD RV+L+K LA
Sbjct: 127 --HQADSIRKMLFAMVDDIRVILVK--------------------------------LAD 152
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP-RNRVGYSRRITTIVSSPPLDER 190
RL + +L F Q Q R + ++ +W P +R+G S D +
Sbjct: 153 RLD------RMRNLKFVSAQAQ--RAVAKEVIDIWCPLASRLGMS------------DVK 192
Query: 191 TASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDA 250
+ +D S + V KS AQKKA+ +
Sbjct: 193 SEMEDLSLKYSNPEVFQQ--------------------------IKSIVAQKKAERSEYL 226
Query: 251 GIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDAR 310
A+ + E G+ V ++SR K YSI+ KMR+++ ++YD
Sbjct: 227 NNAVKKIYTATEK------------AGITVNITSRAKHFYSIYQKMRKRNKEPGELYDLL 274
Query: 311 ALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQG 370
ALR++ ++ CY+L+ IVH LW P++G F DYI PK +GYQSLHT V
Sbjct: 275 ALRIICNTESE---------CYTLIGIVHGLWKPMEGRFKDYIAMPKANGYQSLHTTVIC 325
Query: 371 PDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+G LE+QIRTQ+MH AEHG+A+HWLYK+ N
Sbjct: 326 -EGKPLEIQIRTQEMHSIAEHGVASHWLYKKGTN 358
>gi|255080932|ref|XP_002504032.1| predicted protein [Micromonas sp. RCC299]
gi|226519299|gb|ACO65290.1| predicted protein [Micromonas sp. RCC299]
Length = 1340
Score = 155 bits (393), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 126/381 (33%), Positives = 188/381 (49%), Gaps = 44/381 (11%)
Query: 208 MKDLLEAVVPFDIL--SDRRKRTKFLHDLAKSSEAQKKA-------KVVQDAGI--ALTS 256
+K LL V PFD+L S+R RT A + + A V A + +L S
Sbjct: 582 LKALLACVPPFDLLQASERNSRTAAAAAAAMMAADEATAATAADGRPTVGGASLDASLRS 641
Query: 257 LVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVV 316
L C+ + L + S PG+ V ++ RLKS +S KMRRK++ +V DARALR+V+
Sbjct: 642 LRQCQATTMRSLQLD-SLAPGLRVEITGRLKSAHSTHLKMRRKNIDFGQVCDARALRIVI 700
Query: 317 GDKNGTLHGPA--IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGS 374
G+ G G ++ CY++++ +H+L+ + GE+DDY+ N K SGYQSLHTAV GPDG+
Sbjct: 701 GEP-GEAPGTKDEVEACYAVVNAIHKLYRAVPGEYDDYVANKKRSGYQSLHTAVTGPDGA 759
Query: 375 ALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKD-------- 426
LE Q+RT+ MHE AE G AAHWLYK+ N ++ + DES I
Sbjct: 760 LLEFQVRTRAMHEAAEFGDAAHWLYKDFINAVKRRPN-DESAIGGDGGGGGPEDVDVVAA 818
Query: 427 ---TDDHNPL-DTDLFQKYSSLKMGHPVIRV------EGSNLLAAVIIRVEKGGRELLVA 476
+P +T++ + Y +G PV V G L+A ++ +G R +V
Sbjct: 819 GVARARASPTAETNVDRSY----VGQPVQIVWDVGTSGGGGRLSAGVVCFAEGSRIHVVE 874
Query: 477 VSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEW----WCQPGHGDWCTCLEKYTLC 532
G + V + + W A L++ A D +P + ++ LC
Sbjct: 875 PRRGDVLAPGVGSTGLA-ETAEWVAMG-LHRDALDRAVRANRVEPRQNGPGYLVLEFALC 932
Query: 533 RDGMYHKQDQFGRLLPTFIQI 553
DG +HK D F R L T ++
Sbjct: 933 SDGRWHKVDAFDRKLATTAEL 953
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 68/90 (75%)
Query: 69 GTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 128
GT+ EE LR +LL MVDDPRV LIK+ADRLHNMRT+YA+ AK++ VA ETL +WCS
Sbjct: 350 GTMELEELAKLRKLLLVMVDDPRVFLIKIADRLHNMRTMYAVNSAKSKFVANETLQVWCS 409
Query: 129 LASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A +LG++ KAE+EDL FAV+ P FR +
Sbjct: 410 FAEQLGMFGAKAEMEDLSFAVVNPDAFRAV 439
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 8 KRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV 66
++ VD V A ILHDVVDD + + +FG VAKLV VS L + Q+LRR++R +V
Sbjct: 224 RKYVDAVAACILHDVVDDTECDVEDVRAQFGSRVAKLVQDVSTLGKLPQILRRYQRRSV 282
>gi|303271107|ref|XP_003054915.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462889|gb|EEH60167.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 328
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 114/177 (64%), Gaps = 12/177 (6%)
Query: 231 LHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLY 290
+ DLA + + + + +A +L +L +C +A + L + + PG+ V ++ RLKS Y
Sbjct: 158 MEDLAFAVKDPDAFRAIINARASLNALASCRDACMRSLQLD-AIAPGLRVDITGRLKSAY 216
Query: 291 SIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA------IQCCYSLLDIVHRLWIP 344
S KM RK + V DARALRVV+G+ GPA ++ C+ LL+ +H+L+ P
Sbjct: 217 STHLKMARKKIPFGAVCDARALRVVIGEP-----GPAPGTKDEVEACFVLLEAIHKLYRP 271
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ GE+DDY+ N K SGYQSLHTAV GPDG+ LEVQ+RT+ MH+ AE G AAHW+YK+
Sbjct: 272 VPGEYDDYVTNVKASGYQSLHTAVTGPDGALLEVQVRTRAMHDAAEFGDAAHWIYKD 328
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 109/177 (61%), Gaps = 14/177 (7%)
Query: 8 KRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN 67
K+ VD VVA ILHDVVDD ++ +E EFG VAKLV VS+L + +
Sbjct: 35 KKYVDAVVACILHDVVDDTECAIEDVEAEFGSTVAKLVTDVSKLGN-----------DED 83
Query: 68 QGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWC 127
+G + EE L+ +LL MVDDPRV LIK+ADRLHNMRT+YA+ P KAR VA ETL +WC
Sbjct: 84 RGRMDTEELVKLKKLLLFMVDDPRVFLIKVADRLHNMRTMYAVKPEKARFVANETLQVWC 143
Query: 128 SLASRLGLWALKAELEDLCFAVLQPQIFRKM---RADLASMWSPRNRVGYSRRITTI 181
++ LGL AE+EDL FAV P FR + RA L ++ S R+ S ++ I
Sbjct: 144 PVSEALGLLGANAEMEDLAFAVKDPDAFRAIINARASLNALASCRDACMRSLQLDAI 200
>gi|187924733|ref|YP_001896375.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia phytofirmans PsJN]
gi|187715927|gb|ACD17151.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia phytofirmans PsJN]
Length = 747
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 231 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 285
L DLA E ++ AK++ + + S VA E L+KEL + + +S R
Sbjct: 192 LEDLALRFEEPVTYKRIAKLLDEKRVERESYVAQAIERLQKELAAAN-----IRAEVSGR 246
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKEAGTR 357
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGMV 87
I + FG+EVA+LV V +L + + R + + + + A LR MLL
Sbjct: 78 IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A + VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKITPSPDVARETLDIYAPLANRLGIWQLKWELEDLAL 197
Query: 148 AVLQPQIFRKM 158
+P ++++
Sbjct: 198 RFEEPVTYKRI 208
>gi|209516676|ref|ZP_03265529.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. H160]
gi|209502951|gb|EEA02954.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. H160]
Length = 747
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 111/180 (61%), Gaps = 19/180 (10%)
Query: 231 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 285
L DLA E ++ AK++ + + S VA E L++EL + + +S R
Sbjct: 192 LEDLAFRFEEPNTYKRIAKLLDEKRVERESYVAQAIERLQQELAAAQ-----IRAEVSGR 246
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
K +YSI+ KMR KD+ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKDLNFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHWRYKEAGAR 357
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGMV 87
I + FG+EV +LV V +L + + R + + + + A LR MLL
Sbjct: 78 IADNFGEEVGQLVCDVRKLLRLGTVSLRAAQNALPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL +R A + VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 138 QDIRVVLIRLASRLQTLRYYAAAKITPSPDVARETLDIYAPLANRLGIWQLKWELEDLAF 197
Query: 148 AVLQPQIFRKM 158
+P ++++
Sbjct: 198 RFEEPNTYKRI 208
>gi|91784429|ref|YP_559635.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Burkholderia xenovorans LB400]
gi|91688383|gb|ABE31583.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Burkholderia xenovorans LB400]
Length = 747
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 231 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 285
L DLA E ++ AK++ + + S VA E L+KEL + + +S R
Sbjct: 192 LEDLALRFEEPVTYKRIAKLLDEKRVERESYVAQAIERLQKELAAAH-----IRAEVSGR 246
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKEAGTR 357
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGMV 87
I + FG+EVA+LV V +L + + R + + + + A LR MLL
Sbjct: 78 IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A + VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKITPSPDVARETLDIYAPLANRLGIWQLKWELEDLAL 197
Query: 148 AVLQPQIFRKM 158
+P ++++
Sbjct: 198 RFEEPVTYKRI 208
>gi|427402162|ref|ZP_18893234.1| RelA/SpoT family protein [Massilia timonae CCUG 45783]
gi|425718935|gb|EKU81876.1| RelA/SpoT family protein [Massilia timonae CCUG 45783]
Length = 746
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 110/175 (62%), Gaps = 15/175 (8%)
Query: 241 QKKAKVVQDAGIALTSLVACEEA-LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRK 299
++ A+++++ ++ S VA A L+ EL + G++ +S R K +YSI+SKMR K
Sbjct: 215 KRIARMLEEKRMSRESFVASSIARLQSELAAA-----GIKADVSGRPKHIYSIWSKMRGK 269
Query: 300 DVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPS 359
++ ++YD RA RV+V D I+ CY++L ++H +W P+ EFDDYI PKP+
Sbjct: 270 ELDFSELYDVRAFRVIVAD---------IKTCYTVLGVIHNIWTPVPKEFDDYISRPKPN 320
Query: 360 GYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 414
GY+SLHT V DG LEVQIRTQ+MH +AE+G+AAHW YKE G DE
Sbjct: 321 GYRSLHTVVTADDGRPLEVQIRTQEMHNFAEYGIAAHWRYKEEGGSNFKSQQYDE 375
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 83/160 (51%), Gaps = 22/160 (13%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T +AG+L ++ + G IEE FG EVA LV GV +QL+R R + V Q +
Sbjct: 67 ETRIAGLLFELALMDPSTFGRIEERFGPEVAALVQGV------HQLIRL-RDLTVGQAPV 119
Query: 72 G-----------HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTI--YALPPAKARAV 118
G H E LR MLL M D RVVL++LA +R + RA
Sbjct: 120 GSGKNAAQQAAAHNET--LRKMLLAMATDMRVVLMRLASCAATLRHFAEHKRFDEVTRAY 177
Query: 119 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
+E L + LA+RLG+W LK ELEDL F ++P ++++
Sbjct: 178 GREVLDFYAPLANRLGIWQLKWELEDLAFRFIEPDTYKRI 217
>gi|323526737|ref|YP_004228890.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia sp. CCGE1001]
gi|323383739|gb|ADX55830.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. CCGE1001]
Length = 747
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 231 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 285
L DLA E ++ AK++ + + S VA E L++EL + G+ +S R
Sbjct: 192 LEDLAFRFEEPVVYKRIAKLLDEKRVERESYVAQAIERLQRELAAA-----GIRAEVSGR 246
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH++AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHQFAEYGVAAHWRYKEAGAR 357
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGMV 87
I + FG+EVA+LV V +L + + R + + + + A LR MLL
Sbjct: 78 IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A + VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKLTPSPDVARETLDIYAPLANRLGIWQLKWELEDLAF 197
Query: 148 AVLQPQIFRKM 158
+P +++++
Sbjct: 198 RFEEPVVYKRI 208
>gi|237746845|ref|ZP_04577325.1| GTP pyrophosphokinase [Oxalobacter formigenes HOxBLS]
gi|229378196|gb|EEO28287.1| GTP pyrophosphokinase [Oxalobacter formigenes HOxBLS]
Length = 754
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 96/155 (61%), Gaps = 11/155 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ R K +YSI++KMR K + ++YD RA RV+V D I+ C+++LD
Sbjct: 255 GIKADVTGRPKHIYSIYNKMRGKSLDFSRMYDLRAFRVIVSD---------IKTCFTVLD 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+HRLW PI EFDDYI PKP+GYQSLHT V +G EVQIRTQ+MH AE G+AAH
Sbjct: 306 IIHRLWTPILKEFDDYISRPKPNGYQSLHTVVVSENGQPFEVQIRTQEMHRLAEFGVAAH 365
Query: 397 WLYKETGNKLQSISSMDE--SDIEASSSLSKDTDD 429
W YKETG DE S + S D DD
Sbjct: 366 WRYKETGGSSFVAQQYDEKISFLRQLLSWKTDVDD 400
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRIN--VNQGT 70
T +AG+L + E IE FG EV+ LV V +L + L I N
Sbjct: 76 TRIAGLLAVLPKYHPEVADQIESRFGTEVSNLVDSVRKLFKLRDLTGGLEEIGHGKNAAQ 135
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAK--ARAVAQETLLIWCS 128
+ +A LR MLL M D RVV+I+LA R+ +R + +R A+ETL I+
Sbjct: 136 IRKAQAETLRKMLLAMAADMRVVMIRLAARMAALRYLARKKEDNDASRHYAKETLEIYAP 195
Query: 129 LASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
LA+RLG+W +K ELEDL F + P+ +R + +L
Sbjct: 196 LANRLGIWQVKWELEDLAFRFIDPEAYRTIAKNL 229
>gi|407714183|ref|YP_006834748.1| GTP pyrophosphokinase [Burkholderia phenoliruptrix BR3459a]
gi|407236367|gb|AFT86566.1| GTP pyrophosphokinase [Burkholderia phenoliruptrix BR3459a]
Length = 728
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 231 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 285
L DLA E ++ AK++ + + S VA E L++EL + G+ +S R
Sbjct: 173 LEDLAFRFEEPVVYKRIAKLLDEKRVERESYVAQAIERLQRELAAA-----GIRAEVSGR 227
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 228 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 278
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH++AE+G+AAHW YKE G +
Sbjct: 279 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHQFAEYGVAAHWRYKEAGAR 338
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGMV 87
I + FG+EVA+LV V +L + + R + + + + A LR MLL
Sbjct: 59 IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEALRKMLLAFA 118
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A + VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 119 QDIRVVLIRLASRLQSLRYYAAAKLTPSPDVARETLDIYAPLANRLGIWQLKWELEDLAF 178
Query: 148 AVLQPQIFRKM 158
+P +++++
Sbjct: 179 RFEEPVVYKRI 189
>gi|416908762|ref|ZP_11931227.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. TJI49]
gi|325528728|gb|EGD05798.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. TJI49]
Length = 744
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 97/144 (67%), Gaps = 14/144 (9%)
Query: 262 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 321
E L++EL + ++IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQQEL--AQAHIPA---DVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 322 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 381
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 382 TQKMHEYAEHGLAAHWLYKETGNK 405
TQ MH +AE+G+AAHW YKE G +
Sbjct: 333 TQDMHRFAEYGVAAHWRYKEAGTR 356
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 74/134 (55%), Gaps = 11/134 (8%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEEAND----LRVMLLGMV 87
+ E FGDEVA+LV+ V +L + + LR + + G E LR MLL
Sbjct: 77 LAERFGDEVARLVSDVRKLLRLGTVSLRAAQNAAPDAGRDAAAERRTQIEALRKMLLAFA 136
Query: 88 DDPRVVLIKLADRLHNMRTIYAL---PPAKARAVAQETLLIWCSLASRLGLWALKAELED 144
D RVVLI+LA RL ++R A PP VA+ETL I+ LA+RLG+W LK ELED
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKLDPPPD---VARETLEIYAPLANRLGIWQLKWELED 193
Query: 145 LCFAVLQPQIFRKM 158
L F P ++++
Sbjct: 194 LAFRFEDPVTYKRI 207
>gi|238027732|ref|YP_002911963.1| GTP diphosphokinase [Burkholderia glumae BGR1]
gi|237876926|gb|ACR29259.1| GTP diphosphokinase [Burkholderia glumae BGR1]
Length = 742
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 97/144 (67%), Gaps = 14/144 (9%)
Query: 262 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 321
E LE+EL + + IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 224 ERLEREL--AAAQIPA---EVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 273
Query: 322 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 381
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 274 ----PDIKDCYAVLGIVHHLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 329
Query: 382 TQKMHEYAEHGLAAHWLYKETGNK 405
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 330 TQEMHRFAEYGVAAHWRYKEAGAR 353
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 70/134 (52%), Gaps = 12/134 (8%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND--------LRVMLL 84
I + FG EVA+LVA +L + + I Q + G +A LR MLL
Sbjct: 75 ITQRFGAEVARLVADTRKLLKLGTV----SLIAARQASDGSRDAQAERRAQIEALRKMLL 130
Query: 85 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 144
D RVV+I+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELED
Sbjct: 131 AFAQDIRVVMIRLASRLQSLRYYAAAKLQPPPDVARETLDIYAPLANRLGIWQLKWELED 190
Query: 145 LCFAVLQPQIFRKM 158
L F P ++++
Sbjct: 191 LAFRFEDPVTYKRI 204
>gi|170701133|ref|ZP_02892107.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria IOP40-10]
gi|170133955|gb|EDT02309.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria IOP40-10]
Length = 740
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/180 (46%), Positives = 113/180 (62%), Gaps = 19/180 (10%)
Query: 231 LHDLAKSSE----AQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 285
L DLA E ++ AK++ + I + VA E L+ EL + ++IP +S R
Sbjct: 191 LEDLAFRFEDPVTYKRIAKLLDEKRIEREAYVAQAIERLQHEL--AEAHIPA---DVSGR 245
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 246 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYAVLGIVHHLWQPV 296
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 297 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHWRYKEAGAR 356
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEEAND----LRVMLLGMV 87
+ + FG+EVA+LV+ V +L + + LR + + G EE LR MLL
Sbjct: 77 LTDRFGEEVARLVSDVRKLLRLGTVSLRAAQNAMPDTGRDAAEERRTQIEALRKMLLAFA 136
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKIDPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 196
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 197 RFEDPVTYKRI 207
>gi|385208783|ref|ZP_10035651.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderia sp. Ch1-1]
gi|385181121|gb|EIF30397.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderia sp. Ch1-1]
Length = 747
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 111/178 (62%), Gaps = 19/178 (10%)
Query: 231 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 285
L DLA E ++ AK++ + + S VA E L+KEL + + +S R
Sbjct: 192 LEDLALRFEEPVTYKRIAKLLDEKRVERESYVAQAIERLQKELAAAH-----IRAEVSGR 246
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 403
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE G
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKEAG 355
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGMV 87
I + FG+EVA+LV V +L + + R + + + + A LR MLL
Sbjct: 78 IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A + VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKITPSPDVARETLDIYAPLANRLGIWQLKWELEDLAL 197
Query: 148 AVLQPQIFRKM 158
+P ++++
Sbjct: 198 RFEEPVTYKRI 208
>gi|330816668|ref|YP_004360373.1| GTP diphosphokinase [Burkholderia gladioli BSR3]
gi|327369061|gb|AEA60417.1| GTP diphosphokinase [Burkholderia gladioli BSR3]
Length = 744
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 96/142 (67%), Gaps = 14/142 (9%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
LE+EL + + IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 228 LEQEL--AAAQIPA---EVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV------- 275
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ
Sbjct: 276 --PDIKDCYAVLGIVHHLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQ 333
Query: 384 KMHEYAEHGLAAHWLYKETGNK 405
+MH +AE+G+AAHW YKE G +
Sbjct: 334 EMHRFAEYGVAAHWRYKEAGTR 355
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 71/130 (54%), Gaps = 4/130 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYIN--QLLRRHRRINVNQGTLGHEEAN--DLRVMLLGMVD 88
I + FG+EVA+LVA V +L + L+ + N+ A LR MLL
Sbjct: 77 IAQRFGEEVARLVADVRKLLRLGTVSLMAAKQVPEGNRDAQAERRAQIEALRKMLLAFAQ 136
Query: 89 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 148
D RVV+I+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 DIRVVVIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAFR 196
Query: 149 VLQPQIFRKM 158
P ++++
Sbjct: 197 FEDPVTYKRI 206
>gi|115351411|ref|YP_773250.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia ambifaria AMMD]
gi|115281399|gb|ABI86916.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria AMMD]
Length = 739
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/180 (46%), Positives = 113/180 (62%), Gaps = 19/180 (10%)
Query: 231 LHDLAKSSE----AQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 285
L DLA E ++ AK++ + I + VA E L+ EL + ++IP +S R
Sbjct: 190 LEDLAFRFEDPVTYKRIAKLLDEKRIEREAYVAQAIERLQHEL--AEAHIPA---DVSGR 244
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 245 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYAVLGIVHHLWQPV 295
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 296 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHWRYKEAGAR 355
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 71/130 (54%), Gaps = 4/130 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND----LRVMLLGMVD 88
+ E FG+EVA+LV+ V +L + + R + G EE LR MLL
Sbjct: 77 LTERFGEEVARLVSDVRKLLRLGTVSLRAQNAMPEAGRDAAEERRTQIEALRKMLLAFAQ 136
Query: 89 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 148
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 DIRVVLIRLASRLQSLRYYAAAKIDPPPDVARETLEIYAPLANRLGIWQLKWELEDLAFR 196
Query: 149 VLQPQIFRKM 158
P ++++
Sbjct: 197 FEDPVTYKRI 206
>gi|134295546|ref|YP_001119281.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia vietnamiensis G4]
gi|387902065|ref|YP_006332404.1| GTP pyrophosphokinase [Burkholderia sp. KJ006]
gi|134138703|gb|ABO54446.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia vietnamiensis G4]
gi|387576957|gb|AFJ85673.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Burkholderia sp.
KJ006]
Length = 744
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 112/178 (62%), Gaps = 19/178 (10%)
Query: 231 LHDLAKSSE----AQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 285
L DLA E ++ AK++ + I + VA E L+ EL + ++IP +S R
Sbjct: 191 LEDLAFRFEDPVTYKRIAKLLDEKRIEREAYVAQAIERLQHEL--AQAHIPA---DVSGR 245
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 246 PKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGIVHHLWQPV 296
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 403
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G
Sbjct: 297 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHWRYKEAG 354
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEEAND----LRVMLLGMV 87
+ E FG+EVA+LVA V +L + + LR + + G ++ LR MLL
Sbjct: 77 LTERFGEEVARLVADVRKLLRLGTVSLRAAQNAMPDAGRDAAQQRRTQIEALRKMLLAFA 136
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKADPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 196
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 197 RFEDPVTYKRI 207
>gi|167836853|ref|ZP_02463736.1| GTP pyrophosphokinase [Burkholderia thailandensis MSMB43]
gi|424904162|ref|ZP_18327672.1| GTP pyrophosphokinase [Burkholderia thailandensis MSMB43]
gi|390930140|gb|EIP87542.1| GTP pyrophosphokinase [Burkholderia thailandensis MSMB43]
Length = 747
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 97/144 (67%), Gaps = 14/144 (9%)
Query: 262 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 321
E L++EL + +IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 228 ERLQREL--AAVHIPA---EVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 277
Query: 322 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 381
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 278 ----PDIRDCYTVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 333
Query: 382 TQKMHEYAEHGLAAHWLYKETGNK 405
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 334 TQEMHRFAEYGVAAHWRYKEAGAR 357
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRVMLLGMV 87
I FGDEVA+LV V +L + + LR + + E LR MLL
Sbjct: 78 IAGRFGDEVARLVTDVRKLLRLGTVSLRAAQSAPADASRDAQAERRAQIEALRKMLLAFA 137
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 197
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 198 RFEDPVTYKRI 208
>gi|402566725|ref|YP_006616070.1| GTP pyrophosphokinase ppGpp synthetase I [Burkholderia cepacia GG4]
gi|402247922|gb|AFQ48376.1| GTP pyrophosphokinase ppGpp synthetase I [Burkholderia cepacia GG4]
Length = 744
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 114/180 (63%), Gaps = 19/180 (10%)
Query: 231 LHDLAKSSE----AQKKAKVVQDAGIALTSLVACEEALEK-ELLISTSYIPGMEVTLSSR 285
L DLA E ++ AK++ + I + VA EA+E+ + ++ ++IP +S R
Sbjct: 191 LEDLAFRFEDPVTYKRIAKLLDEKRIEREAYVA--EAIERLQHELAEAHIPA---DVSGR 245
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 246 PKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGIVHHLWQPV 296
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ MH +AE+G+AAHW YKE G +
Sbjct: 297 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQDMHRFAEYGVAAHWRYKEAGAR 356
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEEAND----LRVMLLGMV 87
+ E FG+EVA+LVA V +L + + LR + + G EE LR MLL
Sbjct: 77 LTERFGEEVARLVADVRKLLRLGTVSLRAAQNAKPDTGRDAAEERRTQIEALRKMLLAFA 136
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKIDPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 196
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 197 RFEDPVTYKRI 207
>gi|421475885|ref|ZP_15923817.1| RelA/SpoT family protein [Burkholderia multivorans CF2]
gi|400229518|gb|EJO59365.1| RelA/SpoT family protein [Burkholderia multivorans CF2]
Length = 744
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 14/144 (9%)
Query: 262 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 321
E L++EL + ++ +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQQELAAAN-----VQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 322 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 381
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 382 TQKMHEYAEHGLAAHWLYKETGNK 405
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 333 TQEMHRFAEYGVAAHWRYKEAGTR 356
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVS---RLSYINQLLRRHRRINVNQGTLGHEEAN--DLRVMLLGMV 87
+ E FGDEVA+LVA V RL ++ +H + A LR MLL
Sbjct: 77 LTERFGDEVARLVADVRKLLRLGTVSLRAAQHAAPEAGRDAAQQRRAQIEALRKMLLAFA 136
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKLEPPPEVARETLEIYAPLANRLGIWQLKWELEDLAF 196
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 197 RFEDPITYKRI 207
>gi|161524953|ref|YP_001579965.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia multivorans ATCC
17616]
gi|189350299|ref|YP_001945927.1| GTP pyrophosphokinase [Burkholderia multivorans ATCC 17616]
gi|160342382|gb|ABX15468.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia multivorans ATCC
17616]
gi|189334321|dbj|BAG43391.1| GTP pyrophosphokinase [Burkholderia multivorans ATCC 17616]
Length = 744
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 14/144 (9%)
Query: 262 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 321
E L++EL + ++ +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQQELAAAN-----VQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 322 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 381
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 382 TQKMHEYAEHGLAAHWLYKETGNK 405
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 333 TQEMHRFAEYGVAAHWRYKEAGTR 356
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVS---RLSYINQLLRRHRRINVNQGTLGHEEAN--DLRVMLLGMV 87
+ E FGDEVA+LVA V RL ++ +H + A LR MLL
Sbjct: 77 LTERFGDEVARLVADVRKLLRLGTVSLRAAQHAAPEAGRDAAQQRRAQIEALRKMLLAFA 136
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKLEPPPEVARETLEIYAPLANRLGIWQLKWELEDLAF 196
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 197 RFEDPITYKRI 207
>gi|221197732|ref|ZP_03570778.1| GTP diphosphokinase [Burkholderia multivorans CGD2M]
gi|221204710|ref|ZP_03577727.1| RelA/SpoT family protein [Burkholderia multivorans CGD2]
gi|221214905|ref|ZP_03587873.1| GTP diphosphokinase [Burkholderia multivorans CGD1]
gi|421467902|ref|ZP_15916483.1| RelA/SpoT family protein [Burkholderia multivorans ATCC BAA-247]
gi|221165132|gb|EED97610.1| GTP diphosphokinase [Burkholderia multivorans CGD1]
gi|221175567|gb|EEE07997.1| RelA/SpoT family protein [Burkholderia multivorans CGD2]
gi|221181664|gb|EEE14065.1| GTP diphosphokinase [Burkholderia multivorans CGD2M]
gi|400232987|gb|EJO62569.1| RelA/SpoT family protein [Burkholderia multivorans ATCC BAA-247]
Length = 744
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 14/144 (9%)
Query: 262 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 321
E L++EL + ++ +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQQELAAAN-----VQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 322 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 381
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 382 TQKMHEYAEHGLAAHWLYKETGNK 405
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 333 TQEMHRFAEYGVAAHWRYKEAGTR 356
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVS---RLSYINQLLRRHRRINVNQGTLGHEEAN--DLRVMLLGMV 87
+ E FGDEVA+LVA V RL ++ +H + A LR MLL
Sbjct: 77 LTERFGDEVARLVADVRKLLRLGTVSLRAAQHAAPEAGRDAAQQRRAQIEALRKMLLAFA 136
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKLEPPPEVARETLEIYAPLANRLGIWQLKWELEDLAF 196
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 197 RFEDPITYKRI 207
>gi|83644638|ref|YP_433073.1| GTP pyrophosphokinase [Hahella chejuensis KCTC 2396]
gi|83632681|gb|ABC28648.1| GTP pyrophosphokinase [Hahella chejuensis KCTC 2396]
Length = 746
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 96/146 (65%), Gaps = 14/146 (9%)
Query: 263 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 322
AL +EL S G++ LS R K +YSI+ KM RK + +VYD RA+R++V
Sbjct: 247 ALRQELEAS-----GIKAELSGRAKHIYSIWRKMHRKGIDFSQVYDIRAIRILV------ 295
Query: 323 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 382
P+I+ CYS L +VH LW I EFDDYI NPK +GYQSLHTAV GP G +EVQIRT
Sbjct: 296 ---PSIRDCYSALGVVHALWRHIPHEFDDYIANPKQNGYQSLHTAVVGPSGKIMEVQIRT 352
Query: 383 QKMHEYAEHGLAAHWLYKETGNKLQS 408
QKMHE AE G+ AHWLYK T + +S
Sbjct: 353 QKMHEEAELGVCAHWLYKGTDTQQKS 378
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 87/148 (58%), Gaps = 7/148 (4%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+++A +L+ V + SL + EEFG+EV+KL+ GVS+++ I+ L RH + LG
Sbjct: 84 SLIAAVLYRAVREGKLSLVRVNEEFGEEVSKLIEGVSQMAAISSL--RH---PIQGSVLG 138
Query: 73 HEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R ML+ M+DD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 139 QTQTQVDNIRRMLVTMIDDVRVALIKLAERTCAIRDVKNAGSDKRHRVAREVFDIYAPLA 198
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ LK ELEDL F L ++K+
Sbjct: 199 HRLGIGYLKWELEDLSFRYLHETAYKKI 226
>gi|171318441|ref|ZP_02907596.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria MEX-5]
gi|171096355|gb|EDT41257.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria MEX-5]
Length = 740
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 97/144 (67%), Gaps = 14/144 (9%)
Query: 262 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 321
E L+ EL + ++IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQHEL--AEAHIPA---DVSGRPKHIYSIWRKMRGKELDFAELYDVRAFRVIV----- 276
Query: 322 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 381
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 382 TQKMHEYAEHGLAAHWLYKETGNK 405
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 333 TQEMHRFAEYGIAAHWRYKEAGAR 356
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEEAND----LRVMLLGMV 87
+ E FG+EVA+LV+ V +L + + LR + + G +E LR MLL
Sbjct: 77 LTERFGEEVARLVSDVRKLLRLGTVSLRAAQNAMPDAGRDAAQERRTQIEALRKMLLAFA 136
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A V +ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKIDPPPDVGRETLDIYAPLANRLGIWQLKWELEDLAF 196
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 197 RFEDPVTYKRI 207
>gi|420251756|ref|ZP_14754917.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderia sp. BT03]
gi|398057279|gb|EJL49251.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderia sp. BT03]
Length = 747
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 88/124 (70%), Gaps = 9/124 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH L
Sbjct: 244 VSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGIVHNL 294
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE
Sbjct: 295 WQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKE 354
Query: 402 TGNK 405
G +
Sbjct: 355 AGTR 358
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 5/150 (3%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
V+A L + +I + FG+EVA+LV V +L + + R + + +
Sbjct: 60 VLAAALFSLTPHLANPEQTIADNFGEEVAQLVGDVRKLLRLGTVSMRAAQNAMPEAGRDA 119
Query: 74 EEA-----NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 128
+ A LR MLL D RVVLI+LA RL ++R A VA+ETL I+
Sbjct: 120 QAARRAQVEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKITPTPDVARETLDIYAP 179
Query: 129 LASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W LK ELEDL +PQ ++++
Sbjct: 180 LANRLGIWQLKWELEDLALRFEEPQTYKRI 209
>gi|172060450|ref|YP_001808102.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia ambifaria MC40-6]
gi|171992967|gb|ACB63886.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria MC40-6]
Length = 739
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 97/144 (67%), Gaps = 14/144 (9%)
Query: 262 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 321
E L+ EL + ++IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 226 ERLQHEL--AEAHIPA---DVSGRPKHIYSIWRKMRGKELDFAELYDVRAFRVIV----- 275
Query: 322 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 381
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 276 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 331
Query: 382 TQKMHEYAEHGLAAHWLYKETGNK 405
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 332 TQEMHRFAEYGIAAHWRYKEAGAR 355
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 71/130 (54%), Gaps = 4/130 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND----LRVMLLGMVD 88
+ E FG+EVA+LV+ V +L + + R + G EE LR MLL
Sbjct: 77 LTERFGEEVARLVSDVRKLLRLGTVSLRAQNAMPEAGRDAAEERRTQIEALRKMLLAFAQ 136
Query: 89 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 148
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 DIRVVLIRLASRLQSLRYYAAAKIDPPPDVARETLEIYAPLANRLGIWQLKWELEDLAFR 196
Query: 149 VLQPQIFRKM 158
P ++++
Sbjct: 197 FEDPVTYKRI 206
>gi|390571447|ref|ZP_10251688.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia terrae BS001]
gi|389936550|gb|EIM98437.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia terrae BS001]
Length = 746
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 88/124 (70%), Gaps = 9/124 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH L
Sbjct: 243 VSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGIVHNL 293
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE
Sbjct: 294 WQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKE 353
Query: 402 TGNK 405
G +
Sbjct: 354 AGTR 357
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 5/150 (3%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
V+A L + +I + FG+EVA+LV V +L + + R + + +
Sbjct: 59 VLAAALFSLTPHLANPEQTIADNFGEEVAQLVGDVRKLLRLGTVSMRAAQNAMPEAGRDA 118
Query: 74 EEA-----NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 128
+ A LR MLL D RVVLI+LA RL ++R A VA+ETL I+
Sbjct: 119 QAARRAQVEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAAKITPTPDVARETLDIYAP 178
Query: 129 LASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W LK ELEDL +PQ ++++
Sbjct: 179 LANRLGIWQLKWELEDLALRFEEPQTYKRI 208
>gi|359797514|ref|ZP_09300098.1| GTP pyrophosphokinase [Achromobacter arsenitoxydans SY8]
gi|359364625|gb|EHK66338.1| GTP pyrophosphokinase [Achromobacter arsenitoxydans SY8]
Length = 758
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 103/172 (59%), Gaps = 24/172 (13%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GIDAEVSGRPKHIYSIWNKMRVKRLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 302 MVHEMWTPLSDEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 361
Query: 397 WLYKETGNKLQSISSMDE---------------SDIEASSSLSKDTDDHNPL 433
W YKE G K +S+ E SD+E + + DT P+
Sbjct: 362 WRYKEAGAKGGQVSASSEYDRQLAWMRQLLAWNSDVEGGAEAAPDTAKAAPV 413
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Query: 37 FGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIK 96
FG E+A+LV G L + + R+ G+ + R MLL M D R+VL++
Sbjct: 104 FGAEIARLVQGARALLRLGVVARQASDAAAESGSQKEMQ----RKMLLAMAADLRIVLMR 159
Query: 97 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 156
LA RL +R + A+ETL ++ LA+RLG+W +K E+EDL F L+P ++
Sbjct: 160 LASRLRTLRWHAESKAPCSPDFARETLDLYAPLANRLGIWQIKWEMEDLSFRFLEPDKYK 219
Query: 157 KM 158
++
Sbjct: 220 QI 221
>gi|241663243|ref|YP_002981603.1| (p)ppGpp synthetase I SpoT/RelA [Ralstonia pickettii 12D]
gi|240865270|gb|ACS62931.1| (p)ppGpp synthetase I, SpoT/RelA [Ralstonia pickettii 12D]
Length = 741
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 92/139 (66%), Gaps = 9/139 (6%)
Query: 267 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 326
E L T + G++ +S R K +YSI+ KMR K++ +YD RA RV+V D
Sbjct: 231 EQLQKTLHDAGIQAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD-------- 282
Query: 327 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 386
I+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH
Sbjct: 283 -IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMH 341
Query: 387 EYAEHGLAAHWLYKETGNK 405
+AE+G+AAHW YKE GNK
Sbjct: 342 HFAEYGVAAHWRYKEAGNK 360
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Query: 26 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV-----NQGTLGHEEANDLR 80
A ++ ++E FG EV KLV V +L I + + N+ + LR
Sbjct: 74 AMDNEKALEPAFGAEVVKLVHDVRQLLRIGAIAGLVSPTDASITRKNEAEARRAQVEALR 133
Query: 81 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 140
MLL D RVVLI+LA RL ++R + + +A+ETL I+ LA+RLG+W LK
Sbjct: 134 KMLLAFAQDIRVVLIRLASRLQSLRWLAQTKRSAPEGMARETLDIYAPLANRLGIWQLKW 193
Query: 141 ELEDLCFAVLQPQIFRKM 158
ELEDL F P ++++
Sbjct: 194 ELEDLGFRFEDPDTYKRI 211
>gi|167562969|ref|ZP_02355885.1| GTP diphosphokinase [Burkholderia oklahomensis EO147]
gi|167570157|ref|ZP_02363031.1| GTP diphosphokinase [Burkholderia oklahomensis C6786]
Length = 748
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 231 LHDLAKSSE----AQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 285
L DLA E ++ AK++ + I + VA E L++EL + ++ +S R
Sbjct: 192 LEDLAFRFEDPVTYKRIAKLLDEKRIEREAYVAEAIERLQRELAAAH-----IQAEVSGR 246
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGIVHHLWQPV 297
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHWRYKEAGAR 357
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 74/134 (55%), Gaps = 11/134 (8%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRVMLLGMV 87
I E FGDEVA+LV V +L + + LR + V+ G E LR MLL
Sbjct: 78 IAERFGDEVARLVTDVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRKMLLAFA 137
Query: 88 DDPRVVLIKLADRLHNMRTIYAL---PPAKARAVAQETLLIWCSLASRLGLWALKAELED 144
D RVVLI+LA RL ++R A PP A A+ETL I+ LA+RLG+W LK ELED
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKIEPPPDA---ARETLEIYAPLANRLGIWQLKWELED 194
Query: 145 LCFAVLQPQIFRKM 158
L F P ++++
Sbjct: 195 LAFRFEDPVTYKRI 208
>gi|309782525|ref|ZP_07677249.1| GTP diphosphokinase [Ralstonia sp. 5_7_47FAA]
gi|404396238|ref|ZP_10988033.1| RelA/SpoT family protein [Ralstonia sp. 5_2_56FAA]
gi|308918862|gb|EFP64535.1| GTP diphosphokinase [Ralstonia sp. 5_7_47FAA]
gi|348614727|gb|EGY64266.1| RelA/SpoT family protein [Ralstonia sp. 5_2_56FAA]
Length = 741
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 92/139 (66%), Gaps = 9/139 (6%)
Query: 267 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 326
E L T + G++ +S R K +YSI+ KMR K++ +YD RA RV+V D
Sbjct: 231 EQLQKTLHDAGIQAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD-------- 282
Query: 327 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 386
I+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH
Sbjct: 283 -IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMH 341
Query: 387 EYAEHGLAAHWLYKETGNK 405
+AE+G+AAHW YKE GNK
Sbjct: 342 HFAEYGVAAHWRYKEAGNK 360
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Query: 26 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV-----NQGTLGHEEANDLR 80
A ++ ++E FG EV KLV V +L I + + N+ + LR
Sbjct: 74 AMDNEKALEPAFGAEVVKLVHDVRQLLRIGAIAGLVSPTDASITRKNEAEARRAQVEALR 133
Query: 81 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 140
MLL D RVVLI+LA RL ++R + + +A+ETL I+ LA+RLG+W LK
Sbjct: 134 KMLLAFAQDIRVVLIRLASRLQSLRWLAQTKRSAPEGMARETLDIYAPLANRLGIWQLKW 193
Query: 141 ELEDLCFAVLQPQIFRKM 158
ELEDL F P ++++
Sbjct: 194 ELEDLGFRFEDPDTYKRI 211
>gi|187929058|ref|YP_001899545.1| (p)ppGpp synthetase I SpoT/RelA [Ralstonia pickettii 12J]
gi|187725948|gb|ACD27113.1| (p)ppGpp synthetase I, SpoT/RelA [Ralstonia pickettii 12J]
Length = 741
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 92/139 (66%), Gaps = 9/139 (6%)
Query: 267 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 326
E L T + G++ +S R K +YSI+ KMR K++ +YD RA RV+V D
Sbjct: 231 EQLQKTLHDAGIQAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD-------- 282
Query: 327 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 386
I+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH
Sbjct: 283 -IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMH 341
Query: 387 EYAEHGLAAHWLYKETGNK 405
+AE+G+AAHW YKE GNK
Sbjct: 342 HFAEYGVAAHWRYKEAGNK 360
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Query: 26 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV-----NQGTLGHEEANDLR 80
A +S ++E FG EV KLV V +L I + + N+ + LR
Sbjct: 74 AMDSEKALEPAFGAEVVKLVHDVRQLLRIGAIAGLVSPTDASITRKNEAEARRAQVEALR 133
Query: 81 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 140
MLL D RVV+I+LA RL ++R + + +A+ETL I+ LA+RLG+W LK
Sbjct: 134 KMLLAFAQDIRVVMIRLASRLQSLRWLAQTKRSAPEGMARETLDIYAPLANRLGIWQLKW 193
Query: 141 ELEDLCFAVLQPQIFRKM 158
ELEDL F P ++++
Sbjct: 194 ELEDLGFRFEDPDTYKRI 211
>gi|311104723|ref|YP_003977576.1| GTP pyrophosphokinase [Achromobacter xylosoxidans A8]
gi|310759412|gb|ADP14861.1| GTP pyrophosphokinase [Achromobacter xylosoxidans A8]
Length = 755
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 93/140 (66%), Gaps = 9/140 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI++KMR K + ++YD RALR++V D G CY+ L
Sbjct: 251 GVEAEVSGRPKHIYSIWNKMRVKRLDFSQMYDLRALRIIVDDVRG---------CYTALG 301
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W PI EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 302 MVHEMWTPISEEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 361
Query: 397 WLYKETGNKLQSISSMDESD 416
W YKE G K +++ E D
Sbjct: 362 WRYKEAGAKGGQVAASSEYD 381
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Query: 37 FGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIK 96
FG E+A+LV G L + + R+ G+ + R MLL M D R+VL++
Sbjct: 104 FGAEIARLVQGTRALLRLGVVARQASDAAAESGS----QKEMQRKMLLAMAADLRIVLMR 159
Query: 97 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 156
LA RL +R + A+ETL ++ LA+RLG+W +K E+EDL F L+P+ ++
Sbjct: 160 LASRLRTLRWHAESKAPCSTDFARETLDLYAPLANRLGIWQIKWEMEDLAFRFLEPEKYK 219
Query: 157 KM 158
++
Sbjct: 220 QI 221
>gi|409405788|ref|ZP_11254250.1| (p)ppGpp synthetase I [Herbaspirillum sp. GW103]
gi|386434337|gb|EIJ47162.1| (p)ppGpp synthetase I [Herbaspirillum sp. GW103]
Length = 750
Score = 148 bits (374), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 88/133 (66%), Gaps = 9/133 (6%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K +YSI++KMR K + ++YD RA RV+V D ++ CYS+L IVH +
Sbjct: 255 VSGRPKHIYSIWNKMRGKSIDFSELYDVRAFRVIVDD---------VKTCYSVLGIVHNI 305
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI EFDDYI PK +GYQSLHT V DG ALEVQIRT +MH +AE+G+AAHW YKE
Sbjct: 306 WTPIPEEFDDYISRPKQNGYQSLHTVVMAEDGRALEVQIRTHEMHHFAEYGVAAHWRYKE 365
Query: 402 TGNKLQSISSMDE 414
+G S DE
Sbjct: 366 SGGSNFSAQKYDE 378
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 14/150 (9%)
Query: 16 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV----NQGTL 71
A +LH +D+ +EE FG E+A+LV V +L + L + + V N
Sbjct: 78 AQMLHPELDE------KLEERFGKEIAELVGNVRQLMRFHSLSFQPQHQEVLRGKNAAQQ 131
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQ---ETLLIWCS 128
+ LR MLL M D R VL++LA R+ +R +A + A AQ +T ++
Sbjct: 132 AAAQVETLRKMLLAMATDMRAVLVRLASRVATLR-YFAETKQENEASAQYARQTFDLYAP 190
Query: 129 LASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W LK ELEDL F L+P ++++
Sbjct: 191 LANRLGIWQLKWELEDLSFRFLEPATYKRI 220
>gi|422323088|ref|ZP_16404128.1| GTP pyrophosphokinase [Achromobacter xylosoxidans C54]
gi|317401930|gb|EFV82535.1| GTP pyrophosphokinase [Achromobacter xylosoxidans C54]
Length = 652
Score = 148 bits (374), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 94/140 (67%), Gaps = 9/140 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 140 GIEAEVSGRPKHIYSIWNKMRVKRLDFSQMYDLRALRIIVDD---------VRACYTALG 190
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 191 MVHEMWTPLSDEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 250
Query: 397 WLYKETGNKLQSISSMDESD 416
W YKE G K +++ E D
Sbjct: 251 WRYKEAGAKGGQVAASSEYD 270
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 80 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 139
R MLL M D R+VL++LA RL +R + A A+ETL ++ LA+RLG+W +K
Sbjct: 32 RKMLLAMAADLRIVLMRLASRLRTLRWHAESKTPCSTAFARETLDLYAPLANRLGIWQIK 91
Query: 140 AELEDLCFAVLQPQIFRKM 158
E+EDL F L+P ++++
Sbjct: 92 WEMEDLAFRFLEPDRYKQI 110
>gi|149927844|ref|ZP_01916095.1| RelA/SpoT protein [Limnobacter sp. MED105]
gi|149823466|gb|EDM82697.1| RelA/SpoT protein [Limnobacter sp. MED105]
Length = 764
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 101/171 (59%), Gaps = 17/171 (9%)
Query: 261 EEALEKELLISTSY--------IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 312
E+ +E+E I ++ + G+ +S R K +YSI++KMR K + K+YD RA
Sbjct: 234 EKRVEREAFIESAMASIKENLLLAGIHCEISGRPKHIYSIWNKMRGKGISFDKLYDVRAC 293
Query: 313 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 372
RV+V + CY+ L IVH LW PI EFDDYI PKP+GYQSLHT VQ
Sbjct: 294 RVIVD---------TVDDCYTALGIVHNLWTPISEEFDDYISKPKPNGYQSLHTVVQDET 344
Query: 373 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSL 423
G LEVQIRT+ MH++AE+G+AAHW YKE+G + S E E +L
Sbjct: 345 GKTLEVQIRTEAMHQFAEYGVAAHWRYKESGKDGYTGESRAEGQFEERIAL 395
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 13/158 (8%)
Query: 12 DTVVAGILHDVV--DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQG 69
+T +AG L +V D ES +E++FGDEV +++A + +L + ++ +
Sbjct: 73 NTRIAGALGPLVFFDKHLES--QMEKKFGDEVGRMLASLRKLFKMRSMVGPSATRTTIET 130
Query: 70 TLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAK---------ARAVAQ 120
++ LR MLL M D RV++I+L RL +R + K A + AQ
Sbjct: 131 LRWADQIETLRKMLLAMSTDIRVIMIRLCSRLQTLRHFTSHEDIKNEKGSLWPYAVSHAQ 190
Query: 121 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
ETL ++ LA+RLGLW LK ELEDL F +LQP ++ +
Sbjct: 191 ETLDLYAPLANRLGLWQLKWELEDLSFRILQPNTYKNV 228
>gi|319786299|ref|YP_004145774.1| RelA/SpoT family protein [Pseudoxanthomonas suwonensis 11-1]
gi|317464811|gb|ADV26543.1| RelA/SpoT family protein [Pseudoxanthomonas suwonensis 11-1]
Length = 722
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 88/126 (69%), Gaps = 9/126 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G +S R K +YSI+ KM++K + + K+YD RA+RV+V D + CY+ L
Sbjct: 230 GFTAEISGRPKHIYSIWRKMQKKQLPLDKLYDLRAVRVMVAD---------VAACYAALG 280
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ GEFDDYI PKP+GY SLHTAV GP+G LEVQIRT++MHE AE G+AAH
Sbjct: 281 VVHSLWAPVPGEFDDYIARPKPNGYASLHTAVVGPEGRTLEVQIRTREMHEQAELGVAAH 340
Query: 397 WLYKET 402
W YKET
Sbjct: 341 WRYKET 346
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 58/106 (54%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G LR +LL ++ D RVV + L+ +L MR LP + RA+AQ T I
Sbjct: 108 LHAGREAGRNGEGLRRLLLSIIQDLRVVPVLLSRQLARMRAAGGLPGEERRALAQLTRDI 167
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
LA+RLG+W LK ELEDL F L P +R++ +L + R R
Sbjct: 168 HAPLANRLGIWQLKWELEDLAFRFLDPDTYRRIAHELDESRADRER 213
>gi|421482790|ref|ZP_15930370.1| GTP pyrophosphokinase [Achromobacter piechaudii HLE]
gi|400199101|gb|EJO32057.1| GTP pyrophosphokinase [Achromobacter piechaudii HLE]
Length = 764
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 94/140 (67%), Gaps = 9/140 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GIEAEVSGRPKHIYSIWNKMRVKRLDFAQMYDLRALRIIVED---------VRACYTALG 301
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLSDEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 361
Query: 397 WLYKETGNKLQSISSMDESD 416
W YKE G K +++ E D
Sbjct: 362 WRYKEAGAKGGQVAASSEYD 381
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Query: 37 FGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIK 96
FG EVA+LV G L + + R+ G+ + R MLL M D R+VL++
Sbjct: 104 FGAEVARLVQGTRALLRLGVVARQASDAEAESGSQKEMQ----RKMLLAMAADLRIVLMR 159
Query: 97 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 156
LA RL +R + A A+ETL ++ LA+RLG+W +K E+EDL F L+P ++
Sbjct: 160 LASRLRTLRWHAESKAPCSIAFARETLDLYAPLANRLGIWQIKWEMEDLAFRFLEPDRYK 219
Query: 157 KM 158
++
Sbjct: 220 QI 221
>gi|254514119|ref|ZP_05126180.1| GTP pyrophosphokinase [gamma proteobacterium NOR5-3]
gi|219676362|gb|EED32727.1| GTP pyrophosphokinase [gamma proteobacterium NOR5-3]
Length = 744
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 93/138 (67%), Gaps = 9/138 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI+ KM+RK +G +VYD RALR++V P ++ CY+ L
Sbjct: 257 GIEFEVSGRSKHIYSIWRKMQRKGIGFSQVYDIRALRILV---------PELKDCYATLG 307
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW I EFDDYI +PK +GY+SLHTAV GP+G LEVQIRT +MHE AE G+ AH
Sbjct: 308 LVHGLWRNIPNEFDDYIASPKENGYRSLHTAVIGPEGKILEVQIRTHEMHEEAELGVCAH 367
Query: 397 WLYKETGNKLQSISSMDE 414
W YK T K S SS DE
Sbjct: 368 WRYKGTDTKRGSGSSYDE 385
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 8/164 (4%)
Query: 10 AVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQG 69
V+ ++AG+L+ V + + +E FG VA L+ GV R++ I L R +
Sbjct: 83 GVNCLIAGLLYRAVREQRLEIRDVEARFGKVVADLLRGVLRMAAIADL-----RNPSDTA 137
Query: 70 TLG--HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWC 127
LG + +++R ML+ +VDD +V LIKLA+R +R + + + VA++ ++
Sbjct: 138 VLGEAQRQRDNIRQMLVAIVDDVQVALIKLAERTCAIRAVKS-DKTRQELVARDVFDVYA 196
Query: 128 SLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
LA RLG+ LK ELEDL F L ++++ L R+R
Sbjct: 197 PLAHRLGIGHLKWELEDLSFRYLYNDSYKRIAGLLDGKRLERDR 240
>gi|121599766|ref|YP_992868.1| GTP pyrophosphokinase [Burkholderia mallei SAVP1]
gi|167003092|ref|ZP_02268882.1| GTP pyrophosphokinase [Burkholderia mallei PRL-20]
gi|167894559|ref|ZP_02481961.1| GTP pyrophosphokinase [Burkholderia pseudomallei 7894]
gi|167919223|ref|ZP_02506314.1| GTP pyrophosphokinase [Burkholderia pseudomallei BCC215]
gi|254188580|ref|ZP_04895091.1| GTP diphosphokinase [Burkholderia pseudomallei Pasteur 52237]
gi|254297840|ref|ZP_04965293.1| GTP diphosphokinase [Burkholderia pseudomallei 406e]
gi|386861980|ref|YP_006274929.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1026b]
gi|403518435|ref|YP_006652568.1| GTP diphosphokinase [Burkholderia pseudomallei BPC006]
gi|418534127|ref|ZP_13099976.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1026a]
gi|121228576|gb|ABM51094.1| GTP pyrophosphokinase [Burkholderia mallei SAVP1]
gi|157807669|gb|EDO84839.1| GTP diphosphokinase [Burkholderia pseudomallei 406e]
gi|157936259|gb|EDO91929.1| GTP diphosphokinase [Burkholderia pseudomallei Pasteur 52237]
gi|243061342|gb|EES43528.1| GTP pyrophosphokinase [Burkholderia mallei PRL-20]
gi|385359986|gb|EIF65932.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1026a]
gi|385659108|gb|AFI66531.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1026b]
gi|403074077|gb|AFR15657.1| GTP diphosphokinase [Burkholderia pseudomallei BPC006]
Length = 745
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 347
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRVMLLGMV 87
I E FGDEVA LVA V +L + + LR + V+ G E LR MLL
Sbjct: 76 IAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRKMLLAFA 135
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 136 QDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 195
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 196 RFEDPVTYKRI 206
>gi|124385843|ref|YP_001026206.1| GTP pyrophosphokinase [Burkholderia mallei NCTC 10229]
gi|126448214|ref|YP_001080522.1| GTP pyrophosphokinase [Burkholderia mallei NCTC 10247]
gi|254358433|ref|ZP_04974706.1| GTP pyrophosphokinase [Burkholderia mallei 2002721280]
gi|124293863|gb|ABN03132.1| GTP diphosphokinase [Burkholderia mallei NCTC 10229]
gi|126241084|gb|ABO04177.1| GTP diphosphokinase [Burkholderia mallei NCTC 10247]
gi|148027560|gb|EDK85581.1| GTP pyrophosphokinase [Burkholderia mallei 2002721280]
Length = 745
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 347
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRVMLLGMV 87
I E FGDEVA LVA V +L + + LR + V+ G E LR MLL
Sbjct: 76 IAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRKMLLAFA 135
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 136 QDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 195
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 196 RFEDPVTYKRI 206
>gi|53725295|ref|YP_102788.1| GTP pyrophosphokinase [Burkholderia mallei ATCC 23344]
gi|67641369|ref|ZP_00440149.1| GTP diphosphokinase [Burkholderia mallei GB8 horse 4]
gi|254178309|ref|ZP_04884964.1| GTP pyrophosphokinase [Burkholderia mallei ATCC 10399]
gi|254199740|ref|ZP_04906106.1| GTP pyrophosphokinase [Burkholderia mallei FMH]
gi|254206062|ref|ZP_04912414.1| GTP pyrophosphokinase [Burkholderia mallei JHU]
gi|52428718|gb|AAU49311.1| GTP pyrophosphokinase [Burkholderia mallei ATCC 23344]
gi|147749336|gb|EDK56410.1| GTP pyrophosphokinase [Burkholderia mallei FMH]
gi|147753505|gb|EDK60570.1| GTP pyrophosphokinase [Burkholderia mallei JHU]
gi|160699348|gb|EDP89318.1| GTP pyrophosphokinase [Burkholderia mallei ATCC 10399]
gi|238522292|gb|EEP85737.1| GTP diphosphokinase [Burkholderia mallei GB8 horse 4]
Length = 745
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 347
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRVMLLGMV 87
I E FGDEVA LVA V +L + + LR + V+ G E LR MLL
Sbjct: 76 IAEHFGDEVAHLVADVRKLLRLGTVSLRAVQSAPVDAGRDAQAERRAQIEALRKMLLAFA 135
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 136 QDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 195
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 196 RFEDPVTYKRI 206
>gi|167816074|ref|ZP_02447754.1| GTP pyrophosphokinase [Burkholderia pseudomallei 91]
gi|418387544|ref|ZP_12967400.1| GTP pyrophosphokinase [Burkholderia pseudomallei 354a]
gi|418553592|ref|ZP_13118411.1| GTP pyrophosphokinase [Burkholderia pseudomallei 354e]
gi|385371430|gb|EIF76609.1| GTP pyrophosphokinase [Burkholderia pseudomallei 354e]
gi|385376264|gb|EIF80962.1| GTP pyrophosphokinase [Burkholderia pseudomallei 354a]
Length = 745
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 347
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRVMLLGMV 87
I FGDEVA LVA V +L + + LR + V+ G E LR MLL
Sbjct: 76 IAGHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRKMLLAFA 135
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 136 QDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 195
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 196 RFEDPVTYKRI 206
>gi|78066085|ref|YP_368854.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia sp. 383]
gi|77966830|gb|ABB08210.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. 383]
Length = 744
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 238 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 288
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 289 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 348
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 349 RYKEAGAR 356
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEEAND----LRVMLLGMV 87
+ E FGDEVA+LV+ V +L + + LR + + G EE LR MLL
Sbjct: 77 LTERFGDEVARLVSDVRKLLRLGTVSLRAAQNAVPDAGRDAAEERRTQIEALRKMLLSFA 136
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKIDPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 196
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 197 RFEDPVTYKRI 207
>gi|217423675|ref|ZP_03455176.1| GTP diphosphokinase [Burkholderia pseudomallei 576]
gi|217393533|gb|EEC33554.1| GTP diphosphokinase [Burkholderia pseudomallei 576]
Length = 774
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 266 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 316
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 317 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 376
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 377 RYKEAGAR 384
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRVMLLGMV 87
I E FGDEVA LVA V +L + + LR + V+ G E LR MLL
Sbjct: 105 IAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRKMLLAFA 164
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 165 QDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 224
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 225 RFEDPVTYKRI 235
>gi|167911198|ref|ZP_02498289.1| GTP diphosphokinase [Burkholderia pseudomallei 112]
Length = 745
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 347
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRVMLLGMV 87
I E FGDEVA LVA V +L + + LR + V+ G E LR MLL
Sbjct: 76 IAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRKMLLAFA 135
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 136 QDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 195
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 196 RFEDPVTYKRI 206
>gi|76808714|ref|YP_333288.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1710b]
gi|76578167|gb|ABA47642.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1710b]
Length = 716
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 208 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 258
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 259 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 318
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 319 RYKEAGAR 326
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRVMLLGMV 87
I E FGDEVA LVA V +L + + LR + V+ G E LR MLL
Sbjct: 47 IAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRKMLLAFA 106
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 107 QDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 166
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 167 RFEDPVTYKRI 177
>gi|167582119|ref|ZP_02374993.1| GTP pyrophosphokinase [Burkholderia thailandensis TXDOH]
Length = 747
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 289
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRVMLLGMV 87
I E FGDEVA LV V +L + + LR + + V+ G E LR MLL
Sbjct: 78 IAERFGDEVAHLVTDVRKLLRLGTVSLRAAQSVPVDAGRDAQAERRAQIEALRKMLLAFA 137
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 138 QDIRVVLIRLASRLQSLRHYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 197
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 198 RFEDPVTYKRI 208
>gi|421865372|ref|ZP_16297052.1| GTP pyrophosphokinase ppGpp synthetase I [Burkholderia cenocepacia
H111]
gi|444361037|ref|ZP_21162189.1| RelA/SpoT family protein [Burkholderia cenocepacia BC7]
gi|444365636|ref|ZP_21165760.1| RelA/SpoT family protein [Burkholderia cenocepacia K56-2Valvano]
gi|358074835|emb|CCE47930.1| GTP pyrophosphokinase ppGpp synthetase I [Burkholderia cenocepacia
H111]
gi|443598684|gb|ELT67015.1| RelA/SpoT family protein [Burkholderia cenocepacia BC7]
gi|443605805|gb|ELT73627.1| RelA/SpoT family protein [Burkholderia cenocepacia K56-2Valvano]
Length = 744
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 238 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 288
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 289 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 348
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 349 RYKEAGAR 356
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEEAND----LRVMLLGMV 87
+ E FGDEVA+LV+ V +L + + LR + + G EE LR MLL
Sbjct: 77 LTERFGDEVARLVSDVRKLLRLGTVSLRAAQNAKPDSGRDAAEERRTQIEALRKMLLAFA 136
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKLDPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 196
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 197 RFEDPVTYKRI 207
>gi|107022546|ref|YP_620873.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia cenocepacia AU 1054]
gi|105892735|gb|ABF75900.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia cenocepacia AU 1054]
Length = 745
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 289
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 74/133 (55%), Gaps = 8/133 (6%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-------LRVMLLG 85
+ E FGDEVA+LV+ V +L + + R + N + G + A + LR MLL
Sbjct: 77 LTERFGDEVARLVSDVRKLLRLGTVSLRAAQ-NAAKPDSGRDAAEERRTQIEALRKMLLA 135
Query: 86 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 145
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 136 FAQDIRVVLIRLASRLQSLRYYAAAKLDPPPGVARETLEIYAPLANRLGIWQLKWELEDL 195
Query: 146 CFAVLQPQIFRKM 158
F P ++++
Sbjct: 196 AFRFEDPVTYKRI 208
>gi|53719559|ref|YP_108545.1| GTP pyrophosphokinase [Burkholderia pseudomallei K96243]
gi|126439059|ref|YP_001058750.1| GTP diphosphokinase [Burkholderia pseudomallei 668]
gi|126454760|ref|YP_001066004.1| GTP diphosphokinase [Burkholderia pseudomallei 1106a]
gi|134282417|ref|ZP_01769122.1| GTP diphosphokinase [Burkholderia pseudomallei 305]
gi|167738853|ref|ZP_02411627.1| GTP diphosphokinase [Burkholderia pseudomallei 14]
gi|167845982|ref|ZP_02471490.1| GTP diphosphokinase [Burkholderia pseudomallei B7210]
gi|167902962|ref|ZP_02490167.1| GTP diphosphokinase [Burkholderia pseudomallei NCTC 13177]
gi|237812014|ref|YP_002896465.1| GTP diphosphokinase [Burkholderia pseudomallei MSHR346]
gi|242314558|ref|ZP_04813574.1| GTP diphosphokinase [Burkholderia pseudomallei 1106b]
gi|254180006|ref|ZP_04886605.1| GTP diphosphokinase [Burkholderia pseudomallei 1655]
gi|254197483|ref|ZP_04903905.1| GTP diphosphokinase [Burkholderia pseudomallei S13]
gi|254260414|ref|ZP_04951468.1| GTP diphosphokinase [Burkholderia pseudomallei 1710a]
gi|418541171|ref|ZP_13106668.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1258a]
gi|418547411|ref|ZP_13112570.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1258b]
gi|52209973|emb|CAH35945.1| GTP pyrophosphokinase [Burkholderia pseudomallei K96243]
gi|126218552|gb|ABN82058.1| GTP diphosphokinase [Burkholderia pseudomallei 668]
gi|126228402|gb|ABN91942.1| GTP diphosphokinase [Burkholderia pseudomallei 1106a]
gi|134246455|gb|EBA46544.1| GTP diphosphokinase [Burkholderia pseudomallei 305]
gi|169654224|gb|EDS86917.1| GTP diphosphokinase [Burkholderia pseudomallei S13]
gi|184210546|gb|EDU07589.1| GTP diphosphokinase [Burkholderia pseudomallei 1655]
gi|237506121|gb|ACQ98439.1| GTP diphosphokinase [Burkholderia pseudomallei MSHR346]
gi|242137797|gb|EES24199.1| GTP diphosphokinase [Burkholderia pseudomallei 1106b]
gi|254219103|gb|EET08487.1| GTP diphosphokinase [Burkholderia pseudomallei 1710a]
gi|385358680|gb|EIF64665.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1258a]
gi|385361196|gb|EIF67084.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1258b]
Length = 745
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 347
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRVMLLGMV 87
I E FGDEVA LVA V +L + + LR + V+ G E LR MLL
Sbjct: 76 IAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRKMLLAFA 135
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 136 QDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 195
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 196 RFEDPVTYKRI 206
>gi|254245610|ref|ZP_04938931.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Burkholderia cenocepacia PC184]
gi|124870386|gb|EAY62102.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Burkholderia cenocepacia PC184]
Length = 745
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 289
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 74/133 (55%), Gaps = 8/133 (6%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-------LRVMLLG 85
+ E FGDEVA+LV+ V +L + + R + N + G + A + LR MLL
Sbjct: 77 LTERFGDEVARLVSDVRKLLRLGTVSLRAAQ-NAAKPDSGRDAAEERRTQIEALRKMLLA 135
Query: 86 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 145
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 136 FAQDIRVVLIRLASRLQSLRYYAAAKLDPPPDVARETLEIYAPLANRLGIWQLKWELEDL 195
Query: 146 CFAVLQPQIFRKM 158
F P ++++
Sbjct: 196 AFRFEDPVTYKRI 208
>gi|116689495|ref|YP_835118.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia cenocepacia HI2424]
gi|116647584|gb|ABK08225.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia cenocepacia HI2424]
Length = 745
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 289
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 74/133 (55%), Gaps = 8/133 (6%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-------LRVMLLG 85
+ E FGDEVA+LV+ V +L + + R + N + G + A + LR MLL
Sbjct: 77 LTERFGDEVARLVSDVRKLLRLGTVSLRAAQ-NAAKPDSGRDAAEERRTQIEALRKMLLA 135
Query: 86 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 145
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 136 FAQDIRVVLIRLASRLQSLRYYAAAKLDPPPDVARETLEIYAPLANRLGIWQLKWELEDL 195
Query: 146 CFAVLQPQIFRKM 158
F P ++++
Sbjct: 196 AFRFEDPVTYKRI 208
>gi|206559847|ref|YP_002230611.1| GTP pyrophosphokinase [Burkholderia cenocepacia J2315]
gi|198035888|emb|CAR51779.1| GTP pyrophosphokinase [Burkholderia cenocepacia J2315]
Length = 727
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 221 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 271
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 272 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 331
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 332 RYKEAGAR 339
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEEAND----LRVMLLGMV 87
+ E FGDEVA+LV+ V +L + + LR + + G EE LR MLL
Sbjct: 60 LTERFGDEVARLVSDVRKLLRLGTVSLRAAQNAKPDSGRDAAEERRTQIEALRKMLLAFA 119
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 120 QDIRVVLIRLASRLQSLRYYAAAKLDPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 179
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 180 RFEDPVTYKRI 190
>gi|170732801|ref|YP_001764748.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia cenocepacia MC0-3]
gi|169816043|gb|ACA90626.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia cenocepacia MC0-3]
Length = 745
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 289
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 74/133 (55%), Gaps = 8/133 (6%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-------LRVMLLG 85
+ E FGDEVA+LV+ V +L + + R + N + G + A + LR MLL
Sbjct: 77 LTERFGDEVARLVSDVRKLLRLGTVGLRAAQ-NAAKPDSGRDAAEERRTQIEALRKMLLA 135
Query: 86 MVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDL 145
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 136 FAQDIRVVLIRLASRLQSLRYYAAAKLDPPPDVARETLEIYAPLANRLGIWQLKWELEDL 195
Query: 146 CFAVLQPQIFRKM 158
F P ++++
Sbjct: 196 AFRFEDPVTYKRI 208
>gi|254252559|ref|ZP_04945877.1| Guanosine polyphosphate pyrophosphohydrolase [Burkholderia dolosa
AUO158]
gi|124895168|gb|EAY69048.1| Guanosine polyphosphate pyrophosphohydrolase [Burkholderia dolosa
AUO158]
Length = 744
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 94/144 (65%), Gaps = 14/144 (9%)
Query: 262 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 321
E L++EL + + +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQRELADAN-----IHADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 322 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 381
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 382 TQKMHEYAEHGLAAHWLYKETGNK 405
TQ MH +AE+G+AAHW YKE G +
Sbjct: 333 TQDMHRFAEYGVAAHWRYKEAGTR 356
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 75/134 (55%), Gaps = 11/134 (8%)
Query: 33 IEEEFGDEVAKLVAGVS---RLSYINQLLRRHRRINVNQGTLGHEEAN--DLRVMLLGMV 87
+ E FGDEVA+LV+ V RL ++ + ++ V + A LR MLL
Sbjct: 77 LTEHFGDEVARLVSDVRKLLRLGTVSLRVAQNAMPGVGRDAAAERRAQIEALRKMLLAFA 136
Query: 88 DDPRVVLIKLADRLHNMRTIYAL---PPAKARAVAQETLLIWCSLASRLGLWALKAELED 144
D RVVLI+LA RL ++R A PP + VA+ETL I+ LA+RLG+W LK ELED
Sbjct: 137 QDIRVVLIRLASRLQSLRYYAAAKLDPPPE---VARETLEIYAPLANRLGIWQLKWELED 193
Query: 145 LCFAVLQPQIFRKM 158
L F P ++++
Sbjct: 194 LAFRFEDPVTYKRI 207
>gi|307730403|ref|YP_003907627.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia sp. CCGE1003]
gi|307584938|gb|ADN58336.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. CCGE1003]
Length = 747
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 110/180 (61%), Gaps = 19/180 (10%)
Query: 231 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 285
L DLA E ++ AK++ + + S VA E L++EL + + +S R
Sbjct: 192 LEDLAFRFEEPVVYKRIAKLLDEKRVERESYVAQAIERLQQELAAAN-----IRAEVSGR 246
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
EFDDYI PKP+GY+SLHT V G DG A EVQIRT MH++AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHDMHQFAEYGVAAHWRYKEAGTR 357
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGMV 87
I + FG+EVA+LV V +L + + R + + + + A LR MLL
Sbjct: 78 IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKLTPTPDVARETLDIYAPLANRLGIWQLKWELEDLAF 197
Query: 148 AVLQPQIFRKM 158
+P +++++
Sbjct: 198 RFEEPVVYKRI 208
>gi|186476317|ref|YP_001857787.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia phymatum STM815]
gi|184192776|gb|ACC70741.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia phymatum STM815]
Length = 746
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K + ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IKAEVSGRPKHIYSIWRKMRGKQLDFSELYDVRAFRVIV---------PDIKDCYTVLGI 289
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHNLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 350 RYKEAGTR 357
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 76/132 (57%), Gaps = 5/132 (3%)
Query: 32 SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGM 86
+I + FG+EVA+LV+ V +L + + R + + + + A LR MLL
Sbjct: 77 TIADNFGEEVAQLVSDVRKLLRLGTVSMRAAQNAMPEAGRDAQAARRVQVEALRKMLLAF 136
Query: 87 VDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 146
D RVVLI+LA RL ++R A + VA+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 137 AQDIRVVLIRLASRLQSLRYYAAAKITPSPDVARETLDIYAPLANRLGIWQLKWELEDLA 196
Query: 147 FAVLQPQIFRKM 158
F +PQ ++++
Sbjct: 197 FRFEEPQTYKRI 208
>gi|149374702|ref|ZP_01892476.1| GTP pyrophosphokinase [Marinobacter algicola DG893]
gi|149361405|gb|EDM49855.1| GTP pyrophosphokinase [Marinobacter algicola DG893]
Length = 745
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 112/179 (62%), Gaps = 19/179 (10%)
Query: 229 KFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKS 288
++LH+ A +K AK++ + + S + K+ L+++ G++ LS R K
Sbjct: 216 RYLHETA----YKKIAKLLDEKRLDRESYIKRVITTIKDELVAS----GIDGELSGRAKH 267
Query: 289 LYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGE 348
+YSI+ KMRRK + +VYD RA+R++V P ++ CY+ L IVH LW I E
Sbjct: 268 IYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAALGIVHTLWRHIPNE 318
Query: 349 FDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET--GNK 405
FDDY+ NPK +GYQSLHTAV GP+G +EVQIRTQ MHE AE G+ AHWLYK T GN+
Sbjct: 319 FDDYVANPKENGYQSLHTAVIGPEGKVMEVQIRTQAMHEEAELGVCAHWLYKGTDKGNR 377
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 107/201 (53%), Gaps = 18/201 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
++VA IL+ V + L I +EFGDEVA L+ GV +++ I+ + H + N LG
Sbjct: 84 SLVAAILYRAVREERIPLEKIRKEFGDEVAGLIDGVQQMAAISSI---HHPLKGN--VLG 138
Query: 73 HEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
E +++R ML+ M+DD RV LIKLA+R +R + P K VA+E I+ LA
Sbjct: 139 QTEGQLDNVRKMLVTMIDDVRVALIKLAERTCAIRAVKNAPEEKRMRVAREVFDIYAPLA 198
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIVSSPPLD 188
RLG+ +K ELEDL F L ++K +A + + +R Y +R+ T + D
Sbjct: 199 HRLGIGHIKWELEDLSFRYLHETAYKK----IAKLLDEKRLDRESYIKRVITTIK----D 250
Query: 189 ERTASD-DESFTTFDEHVLSM 208
E AS D + +H+ S+
Sbjct: 251 ELVASGIDGELSGRAKHIYSI 271
>gi|293603983|ref|ZP_06686396.1| GTP diphosphokinase [Achromobacter piechaudii ATCC 43553]
gi|292817587|gb|EFF76655.1| GTP diphosphokinase [Achromobacter piechaudii ATCC 43553]
Length = 769
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 94/140 (67%), Gaps = 9/140 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GIDAEVSGRPKHIYSIWNKMRVKRLDFAQMYDLRALRIIVED---------VRACYTALG 301
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLSNEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 361
Query: 397 WLYKETGNKLQSISSMDESD 416
W YKE G K +++ E D
Sbjct: 362 WRYKEAGAKGGQVAASSEYD 381
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Query: 37 FGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIK 96
FG EVA+LV G L + + R+ + G+ + R MLL M D R+VL++
Sbjct: 104 FGAEVARLVQGTRALLRLGVVARQASDVEAESGSQKEMQ----RKMLLAMAADLRIVLMR 159
Query: 97 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 156
LA RL +R + A+ETL ++ LA+RLG+W +K E+EDL F L+P ++
Sbjct: 160 LASRLRTLRWHAESKAPCSTDFARETLDLYAPLANRLGIWQIKWEMEDLSFRFLEPDRYK 219
Query: 157 KM 158
++
Sbjct: 220 QI 221
>gi|295677049|ref|YP_003605573.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia sp. CCGE1002]
gi|295436892|gb|ADG16062.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. CCGE1002]
Length = 747
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 110/180 (61%), Gaps = 19/180 (10%)
Query: 231 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 285
L DLA E ++ AK++ + + S VA E L++EL + + +S R
Sbjct: 192 LEDLAFRFEEPDTYKRIAKLLDEKRVERESYVAQAIERLQQELAAAH-----IRAEVSGR 246
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
K +YSI+ KMR K + ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKQLDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 298 RKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHWRYKEAGAR 357
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGMV 87
I + FG+EVA+LV V +L + + R + + + + A LR MLL
Sbjct: 78 IADNFGEEVAQLVGDVRKLLRLGTVSLRAAQNAMPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A + VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKITPSPDVARETLDIYAPLANRLGIWQLKWELEDLAF 197
Query: 148 AVLQPQIFRKM 158
+P ++++
Sbjct: 198 RFEEPDTYKRI 208
>gi|385330532|ref|YP_005884483.1| (p)ppGpp synthetase SpoT/RelA [Marinobacter adhaerens HP15]
gi|311693682|gb|ADP96555.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Marinobacter adhaerens HP15]
Length = 757
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 89/131 (67%), Gaps = 11/131 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E LS R K +YSI+ KMRRK + +VYD RA+R++V P ++ CY+ L
Sbjct: 268 GIEGELSGRAKHIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAALG 318
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT MHE AE G+ AH
Sbjct: 319 IVHTLWRHIPNEFDDYIANPKENGYQSLHTAVIGPEGKVMEVQIRTHTMHEEAELGVCAH 378
Query: 397 WLYK--ETGNK 405
WLYK + GNK
Sbjct: 379 WLYKGMDKGNK 389
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 98/176 (55%), Gaps = 13/176 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
++VA IL+ V + L +I +EFGDEVA L+ GV +++ I+ + H + N LG
Sbjct: 96 SLVAAILYRAVREERVPLETIRKEFGDEVAGLINGVQQMAAISSI---HHPLKGN--VLG 150
Query: 73 HEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
E +++R ML+ M+DD RV LIKLA+R +R + P K VA+E I+ LA
Sbjct: 151 QSEGQLDNVRKMLVTMIDDVRVALIKLAERTCAIRAVKDAPEEKRMRVAREVFDIYAPLA 210
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIVSS 184
RLG+ +K ELEDL F L ++K +A + + +R GY +R+ + +
Sbjct: 211 HRLGIGHIKWELEDLSFRYLHGSAYKK----IAKLLDEKRLDRDGYIKRVIETLQT 262
>gi|167719851|ref|ZP_02403087.1| GTP diphosphokinase [Burkholderia pseudomallei DM98]
Length = 745
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHYLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 347
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRVMLLGMV 87
I E FGDEVA LVA V +L + + LR + V+ G E LR MLL
Sbjct: 76 IAEHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRKMLLAFA 135
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 136 QDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 195
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 196 RFEDPVTYKRI 206
>gi|358451268|ref|ZP_09161702.1| (p)ppGpp synthetase I, SpoT/RelA [Marinobacter manganoxydans
MnI7-9]
gi|357224501|gb|EHJ03032.1| (p)ppGpp synthetase I, SpoT/RelA [Marinobacter manganoxydans
MnI7-9]
Length = 745
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 89/131 (67%), Gaps = 11/131 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E LS R K +YSI+ KMRRK + +VYD RA+R++V P ++ CY+ L
Sbjct: 256 GIEGELSGRAKHIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAALG 306
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT MHE AE G+ AH
Sbjct: 307 IVHTLWRHIPNEFDDYIANPKENGYQSLHTAVIGPEGKVMEVQIRTHTMHEEAELGVCAH 366
Query: 397 WLYK--ETGNK 405
WLYK + GNK
Sbjct: 367 WLYKGMDKGNK 377
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 98/176 (55%), Gaps = 13/176 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
++VA IL+ V + L +I +EFGDEVA L+ GV +++ I+ + H + N LG
Sbjct: 84 SLVAAILYRAVREERVPLETIRKEFGDEVAGLINGVQQMAAISSI---HHPLKGN--VLG 138
Query: 73 HEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
E +++R ML+ M+DD RV LIKLA+R +R + P K VA+E I+ LA
Sbjct: 139 QSEGQLDNVRKMLVTMIDDVRVALIKLAERTCAIRAVKDAPEEKRMRVAREVFDIYAPLA 198
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIVSS 184
RLG+ +K ELEDL F L ++K +A + + +R GY +R+ + +
Sbjct: 199 HRLGIGHIKWELEDLSFRYLHGSAYKK----IAKLLDEKRLDRDGYIKRVIETLQT 250
>gi|167587364|ref|ZP_02379752.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Burkholderia ubonensis Bu]
Length = 746
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 240 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 290
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW
Sbjct: 291 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHSFAEYGVAAHW 350
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 351 RYKEAGTR 358
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
Query: 37 FGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRVMLLGMVDDPR 91
FGDEVA+LV+ V +L + + LR + G E LR MLL D R
Sbjct: 83 FGDEVARLVSDVRKLLRLGTVSLRVAQNAAPEAGRDAAAERRAQIEALRKMLLAFAQDIR 142
Query: 92 VVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 151
VVLI+LA RL ++R A A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 143 VVLIRLASRLQSLRYYAAAKVAPPPDVARETLEIYAPLANRLGIWQLKWELEDLAFRFED 202
Query: 152 PQIFRKM 158
P ++++
Sbjct: 203 PVTYKRI 209
>gi|253995493|ref|YP_003047557.1| RelA/SpoT family protein [Methylotenera mobilis JLW8]
gi|253982172|gb|ACT47030.1| RelA/SpoT family protein [Methylotenera mobilis JLW8]
Length = 666
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 112/181 (61%), Gaps = 18/181 (9%)
Query: 266 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 325
+ELL G++ +S R K +YSI +KMRRK++ +++D RA+R++V D
Sbjct: 244 EELLKQKLAQAGIQAEVSGRPKHIYSIINKMRRKNLDFEQLFDVRAVRILVED------- 296
Query: 326 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 385
++ CYS L +V LW PI GEFDDYI PK + Y+SLHTAV GP+G ALEVQIRT +M
Sbjct: 297 --VKDCYSALSLVQTLWQPIPGEFDDYIARPKSNNYRSLHTAVSGPEGLALEVQIRTHEM 354
Query: 386 HEYAEHGLAAHWLYKETGNKLQSISSMDES-----DIEASSSLSKDTDD-HNPLDTDLFQ 439
H+Y+E G+AAHW YKE G +S + +DE I A + D+ D T+LFQ
Sbjct: 355 HQYSELGVAAHWRYKEGG---KSDNILDEKIAWLRQILAWKEGATDSSDLLEQFKTELFQ 411
Query: 440 K 440
+
Sbjct: 412 E 412
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 89/151 (58%), Gaps = 7/151 (4%)
Query: 12 DTVVAGILHDV---VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQ 68
++++A IL+ V +D+ E+L + FG+ VA+LV G+ R++ + + R Q
Sbjct: 78 ESIIATILYAVPAHIDNWQETL---KLRFGNNVARLVEGLLRITQVQEFSELERLQQQEQ 134
Query: 69 GTLGH-EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWC 127
+ ++ LR MLL MV D RVVLIKLA+R +R++ + +A+E I+
Sbjct: 135 EDADNSKQVESLRKMLLAMVQDIRVVLIKLAERTQILRSLAGASREQQVLIAREIQGIFS 194
Query: 128 SLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W LK E+EDL L+PQ+++++
Sbjct: 195 PLANRLGVWQLKWEMEDLSLRYLEPQLYKEV 225
>gi|300311292|ref|YP_003775384.1| (p)ppGpp synthetase I [Herbaspirillum seropedicae SmR1]
gi|300074077|gb|ADJ63476.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) protein
[Herbaspirillum seropedicae SmR1]
Length = 749
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 88/133 (66%), Gaps = 9/133 (6%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K +YSI++KMR K + ++YD RA RV+V D ++ CY++L IVH +
Sbjct: 254 VSGRPKHIYSIWNKMRGKHIDFSELYDVRAFRVIVDD---------VKTCYAVLGIVHDI 304
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI EFDDYI PK +GYQSLHT V DG ALEVQIRT +MH +AE+G+AAHW YKE
Sbjct: 305 WTPIPEEFDDYISRPKQNGYQSLHTVVTAEDGRALEVQIRTHEMHHFAEYGVAAHWRYKE 364
Query: 402 TGNKLQSISSMDE 414
+G S DE
Sbjct: 365 SGGSNFSAQKYDE 377
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRI--NVNQGTLGHEEANDLRVMLLGMVDD 89
+EE FG E+A LV V +L + + + + N + LR MLL M D
Sbjct: 89 LEERFGKEIADLVGNVRQLMRFHSFSFQPQQEVLRGKNAAQQAAAQIETLRKMLLAMATD 148
Query: 90 PRVVLIKLADRLHNMRTIYALPPAKARA---VAQETLLIWCSLASRLGLWALKAELEDLC 146
R VL++LA R+ +R +A + A A++T ++ LA+RLG+W LK ELEDL
Sbjct: 149 MRAVLVRLASRVATLR-YFAETKQEDEASANYARQTFELYAPLANRLGIWQLKWELEDLS 207
Query: 147 FAVLQPQIFRKM 158
F L+P ++++
Sbjct: 208 FRFLEPVTYKRI 219
>gi|415946935|ref|ZP_11556523.1| GTP pyrophosphokinase [Herbaspirillum frisingense GSF30]
gi|407758147|gb|EKF68016.1| GTP pyrophosphokinase [Herbaspirillum frisingense GSF30]
Length = 727
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 99/162 (61%), Gaps = 17/162 (10%)
Query: 261 EEALEKELLISTSYI--------PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 312
E+ LE+E ++++ + +S R K +YSI++KMR K + ++YD RA
Sbjct: 203 EKRLEREAFVASAIARLRSEMAAQDIRAEVSGRPKHIYSIWNKMRGKSIDFSELYDVRAF 262
Query: 313 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 372
RV+V D ++ CY++L IVH +W PI EFDDYI PK +GYQSLHT V D
Sbjct: 263 RVIVDD---------VKTCYAVLGIVHDIWTPIPEEFDDYISRPKQNGYQSLHTVVLAED 313
Query: 373 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 414
G ALEVQIRT +MH +AE+G+AAHW YKE+G S DE
Sbjct: 314 GRALEVQIRTHEMHHFAEYGVAAHWRYKESGGSNFSAQKYDE 355
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 8/133 (6%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV----NQGTLGHEEANDLRVMLLGMVD 88
+EE FG E+A+LV V +L + L + + V N + LR MLL M
Sbjct: 66 LEERFGKEIAELVGNVRQLMRFHSLSFQPQNQEVLRGKNAAQQAAAQVETLRKMLLAMAT 125
Query: 89 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQ---ETLLIWCSLASRLGLWALKAELEDL 145
D R VL++LA R+ +R +A + A AQ +T ++ LA+RLG+W LK ELEDL
Sbjct: 126 DMRAVLVRLASRVATLR-YFAETKQENEASAQYARQTFDLYAPLANRLGIWQLKWELEDL 184
Query: 146 CFAVLQPQIFRKM 158
F L+PQ ++++
Sbjct: 185 SFRFLEPQTYKRI 197
>gi|91788565|ref|YP_549517.1| (p)ppGpp synthetase I SpoT/RelA [Polaromonas sp. JS666]
gi|91697790|gb|ABE44619.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Polaromonas sp. JS666]
Length = 750
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 90/141 (63%), Gaps = 10/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K +YSI KMR K +G +V+D RALRV+ D NG CY+ L
Sbjct: 252 GIAALVQGRPKHIYSIVKKMRGKSLGFDQVFDIRALRVIAADING---------CYAALG 302
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH + P+ GEFDDYI PK +GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAH
Sbjct: 303 FVHSRFTPVAGEFDDYIAKPKSNGYQSLHTVVRDAAGRAVEIQIRTQAMHDHAEHGVAAH 362
Query: 397 WLYKETGNKLQS-ISSMDESD 416
W YKE G K S +S+ E D
Sbjct: 363 WAYKEAGTKGYSGVSASSEYD 383
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 26 ACESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN--DL 79
AC+ L +E FG A L ++L ++ R+ R + L A ++
Sbjct: 87 ACQHLTKPQEVIAKAFGANYAALAIETTKLVHVQ---RQARTADAKAQLLDDPAAQTENV 143
Query: 80 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 139
R MLL D RVV+++LA RL +R A + A+A E+L ++ LA+RLG+W +K
Sbjct: 144 RKMLLAFSRDLRVVMLRLASRLQTLRYYAATRQSAPLALAHESLHVFAPLANRLGIWQIK 203
Query: 140 AELEDLCFAVLQPQIFR 156
E+EDL F L+P ++
Sbjct: 204 WEMEDLAFRFLEPDTYK 220
>gi|399020946|ref|ZP_10723070.1| (p)ppGpp synthetase, RelA/SpoT family [Herbaspirillum sp. CF444]
gi|398093912|gb|EJL84286.1| (p)ppGpp synthetase, RelA/SpoT family [Herbaspirillum sp. CF444]
Length = 752
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI++KMR K + ++YD RA RV+V D I+ CY++L I
Sbjct: 250 IKAEVSGRPKHIYSIWNKMRGKSIDFSELYDVRAFRVIVDD---------IKTCYTVLGI 300
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
+H +W+PI EFDDYI PK +GYQSLHT V DG LEVQIRT +MH +AE+G+AAHW
Sbjct: 301 IHNIWVPIPKEFDDYISRPKQNGYQSLHTVVIAEDGRPLEVQIRTHEMHHFAEYGVAAHW 360
Query: 398 LYKETGNKLQSISSMDE 414
YKE+G S DE
Sbjct: 361 RYKESGGSNFSAQKYDE 377
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 5/152 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV---NQ 68
+T +AG+L ++ ++ +IEE FG ++A LVAGV +L + L +H + + N
Sbjct: 68 ETRIAGLLFELHVLDLDAAATIEERFGKDIADLVAGVRQLMRFHGLTFQHPQEVLRGKNA 127
Query: 69 GTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIY--ALPPAKARAVAQETLLIW 126
+ LR MLL M D RVVL++LA R+ +R L A+ET ++
Sbjct: 128 AQQAAAQVETLRKMLLAMATDMRVVLVRLASRVTTLRYFAENKLENETTAQYARETFDLY 187
Query: 127 CSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W LK ELEDL F ++P ++++
Sbjct: 188 APLANRLGIWQLKWELEDLSFRFIEPVTYKRI 219
>gi|88703547|ref|ZP_01101263.1| GTP pyrophosphokinase [Congregibacter litoralis KT71]
gi|88702261|gb|EAQ99364.1| GTP pyrophosphokinase [Congregibacter litoralis KT71]
Length = 744
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/138 (52%), Positives = 94/138 (68%), Gaps = 9/138 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI+ KM+RK +G +VYD RA+R++V P ++ CY+ L
Sbjct: 257 GIEFEISGRSKHIYSIWRKMQRKGIGFSQVYDIRAIRILV---------PELKDCYATLG 307
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW I EFDDYI +PK +GY+SLHTAV GP+G LEVQIRT++MHE AE G+ AH
Sbjct: 308 LVHGLWRNIPNEFDDYIASPKENGYRSLHTAVIGPEGKILEVQIRTREMHEEAELGVCAH 367
Query: 397 WLYKETGNKLQSISSMDE 414
W YK T + S SS DE
Sbjct: 368 WRYKGTDTQPGSGSSYDE 385
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 84/151 (55%), Gaps = 8/151 (5%)
Query: 10 AVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQG 69
VD ++AG+L+ V + SL +E+ FG +V+ + GV R++ I L R +
Sbjct: 83 GVDCLIAGLLYRAVREQRLSLDDVEKRFGKKVSNQLRGVLRMAAIADL-----RNPSDTA 137
Query: 70 TLGHEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWC 127
LG E +++R ML+ +VDD +V LIKLA+R +R + + + VA++ ++
Sbjct: 138 VLGEAERQRDNIRKMLVAIVDDVQVALIKLAERTCAIRAVKS-DKTRQELVARDVFDVYA 196
Query: 128 SLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA RLG+ LK ELEDL F L ++++
Sbjct: 197 PLAHRLGIGHLKWELEDLSFRYLYNDSYKRI 227
>gi|350545530|ref|ZP_08915006.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Candidatus
Burkholderia kirkii UZHbot1]
gi|350526692|emb|CCD39813.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Candidatus
Burkholderia kirkii UZHbot1]
Length = 740
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 87/124 (70%), Gaps = 9/124 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K +YSI+ KMR K + ++ D RA RV+VGD I+ CY++L IVH L
Sbjct: 243 VSGRPKHIYSIWKKMRGKHLDFSELNDVRAFRVIVGD---------IKDCYTVLGIVHNL 293
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE
Sbjct: 294 WQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKE 353
Query: 402 TGNK 405
G +
Sbjct: 354 AGTR 357
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG-----HEEANDLRVMLLGMV 87
I E FG EV +LV V +L + + R + + T H + LR MLL
Sbjct: 78 ITERFGPEVQRLVGDVRKLLRLGSVSSRATLAELPENTRDAQAARHAQVEALRKMLLAFA 137
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA R+ +R A + V +ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 138 QDIRVVLIRLASRVQTLRYHAAHKIDPSPDVPRETLEIYAPLANRLGIWQLKWELEDLSF 197
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 198 RFEDPVTYKRI 208
>gi|365873417|ref|ZP_09412950.1| (p)ppGpp synthetase, RelA/SpoT family [Thermanaerovibrio velox DSM
12556]
gi|363983504|gb|EHM09711.1| (p)ppGpp synthetase, RelA/SpoT family [Thermanaerovibrio velox DSM
12556]
Length = 760
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 89/133 (66%), Gaps = 9/133 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +LS R K YSI+ KMRRK++ + ++YD ALRVVVG + CY +L
Sbjct: 268 GIEASLSGRPKHFYSIYEKMRRKNLSLEQLYDLLALRVVVG---------TVAECYQVLG 318
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 319 LVHTIWKPIPGQFDDYIANPKSNMYQSLHTTVLGPSGEPLEVQIRTWEMHWLAEYGIAAH 378
Query: 397 WLYKETGNKLQSI 409
W YKE ++ I
Sbjct: 379 WHYKEGKRRVDQI 391
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 92/149 (61%), Gaps = 12/149 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
VDT+ A +LHDV++D ++ FG++V +V GV++L + +
Sbjct: 103 VDTLCAALLHDVLEDTEIGKEEMQSRFGEDVVTMVDGVTKLG------------KLAFKS 150
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +A +LR M L M D RVVLIKLADRLHNMRT+ A K +A+ETL I+ LA
Sbjct: 151 MEDYQAENLRKMFLVMAKDIRVVLIKLADRLHNMRTLQAHRRDKQITIAKETLEIYAPLA 210
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMR 159
RLG++ +K ELEDLCF +L+P+I+ ++R
Sbjct: 211 HRLGIYNVKRELEDLCFKILEPEIYYEIR 239
>gi|421745285|ref|ZP_16183143.1| (p)ppgpp synthetase i (gtp pyrophosphokinase) [Cupriavidus necator
HPC(L)]
gi|409776307|gb|EKN57726.1| (p)ppgpp synthetase i (gtp pyrophosphokinase) [Cupriavidus necator
HPC(L)]
Length = 742
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 93/144 (64%), Gaps = 14/144 (9%)
Query: 262 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 321
E L++EL + G+ +S R K +YSI+ KMR KD+ +YD RA RV+V D
Sbjct: 232 ERLQRELAAA-----GIRAEVSGRPKHIYSIWKKMRGKDLDFADLYDVRAFRVIVDD--- 283
Query: 322 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 381
I+ CY++L IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIR
Sbjct: 284 ------IKDCYAVLGIVHHVWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIR 337
Query: 382 TQKMHEYAEHGLAAHWLYKETGNK 405
T +MH +AE+G+AAHW YKE G K
Sbjct: 338 THEMHHFAEYGVAAHWRYKEAGGK 361
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 76/136 (55%), Gaps = 5/136 (3%)
Query: 28 ESLGSIEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINV----NQGTLGHEEANDLRVM 82
E+ I E FGDEVA+LV V +L I + + R + N+ HE+ LR M
Sbjct: 77 ETEAEIPERFGDEVARLVKDVRQLLRIGAIAVNRGDTVEAPSSRNEAQARHEQVEALRKM 136
Query: 83 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 142
LL D RVVL++LA RL +R + A VA+ETL I+ LA+RLG+W +K EL
Sbjct: 137 LLAFAQDIRVVLVRLASRLQTLRWLAQTKNAPLPGVARETLDIYAPLANRLGIWQMKWEL 196
Query: 143 EDLCFAVLQPQIFRKM 158
EDL F QP ++++
Sbjct: 197 EDLAFRFEQPDTYKRI 212
>gi|170695919|ref|ZP_02887059.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia graminis C4D1M]
gi|170139217|gb|EDT07405.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia graminis C4D1M]
Length = 747
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 110/180 (61%), Gaps = 19/180 (10%)
Query: 231 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 285
L DLA E ++ AK++ + + S VA E L++EL + + +S R
Sbjct: 192 LEDLAFRFEEPAVYKRIAKLLDEKRVERESYVAQAIERLQQELAAAN-----IRAEVSGR 246
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
K ++SI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIFSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHRFAEYGVAAHWRYKEAGTR 357
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGMV 87
I + FG+EVA+LV+ V +L + + R + + + + A LR MLL
Sbjct: 78 IADNFGEEVAQLVSDVRKLLRLGTVSLRAAQNTMPEAGRDAQAARRAQVEALRKMLLAFA 137
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A + VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 138 QDIRVVLIRLASRLQSLRYYAAAKLTPSPDVARETLDIYAPLANRLGIWQLKWELEDLAF 197
Query: 148 AVLQPQIFRKM 158
+P +++++
Sbjct: 198 RFEEPAVYKRI 208
>gi|120555153|ref|YP_959504.1| (p)ppGpp synthetase I SpoT/RelA [Marinobacter aquaeolei VT8]
gi|387813411|ref|YP_005428893.1| (p)ppGpp synthetase I/GTP pyrophosphokinaseP), SpoT/RelA
[Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|120325002|gb|ABM19317.1| (p)ppGpp synthetase I, SpoT/RelA [Marinobacter aquaeolei VT8]
gi|381338423|emb|CCG94470.1| (p)ppGpp synthetase I/GTP pyrophosphokinaseP), SpoT/RelA
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 745
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 88/132 (66%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ LS R K +YSI+ KMRRK + +VYD RA+R++V P ++ CY L
Sbjct: 256 GIKAELSGRAKHIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYGALG 306
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT MHE AE G+ AH
Sbjct: 307 IVHTLWRHIPNEFDDYIANPKENGYQSLHTAVIGPEGKVMEVQIRTHAMHEEAELGVCAH 366
Query: 397 WLYKETGNKLQS 408
WLYK T + +S
Sbjct: 367 WLYKGTDTRNKS 378
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 85/148 (57%), Gaps = 7/148 (4%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
++VA +L+ V + L + +EFGDEVA L+ GV +++ I+ + H + N LG
Sbjct: 84 SLVAAVLYRAVREERVPLEEVRKEFGDEVAGLINGVQQMAAISSI---HHPLKGN--VLG 138
Query: 73 HEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
E +++R ML+ M+DD RV LIKLA+R +R + P K VA+E I+ LA
Sbjct: 139 QSEGQLDNVRKMLVTMIDDVRVALIKLAERTCAIRAVKDAPEEKRMRVAREVFDIYAPLA 198
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L ++K+
Sbjct: 199 HRLGIGHIKWELEDLSFRYLHGSAYKKI 226
>gi|326794413|ref|YP_004312233.1| (p)ppGpp synthetase I SpoT/RelA [Marinomonas mediterranea MMB-1]
gi|326545177|gb|ADZ90397.1| (p)ppGpp synthetase I, SpoT/RelA [Marinomonas mediterranea MMB-1]
Length = 749
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 96/152 (63%), Gaps = 11/152 (7%)
Query: 267 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 326
ELL S +E L R K +YSI+ KM+RK++G +VYD RA+R++V +
Sbjct: 246 ELLDSRLKGIKIEADLMGRAKHIYSIWRKMKRKNIGFDEVYDVRAVRILVEED------- 298
Query: 327 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 386
CY +L +VH LW PI EFDDYI NPKP+GYQSLHTAV GP G ALE+QIRT MH
Sbjct: 299 --MQCYGVLGVVHNLWKPIPQEFDDYISNPKPNGYQSLHTAVVGPQGRALEIQIRTNTMH 356
Query: 387 EYAEHGLAAHWLYKETGNKLQSISSMDESDIE 418
E AE G+ AHW YK G L S S+ E ++
Sbjct: 357 EDAELGVCAHWKYK--GTDLSSNSTSYEEKLQ 386
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 11/173 (6%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA L+ V + + + + FG +VA L+ GV R+ +++ L + L
Sbjct: 82 DSLVAAALYRTVREDQLPISRVVDMFGRKVASLIEGVIRMGEVSKNLS----ADATAEVL 137
Query: 72 GHEEAN--DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
G E LR ML+ ++DD RVVLIKLA+R ++ A+ AVA E ++ L
Sbjct: 138 GSSENQLESLRKMLVSIIDDVRVVLIKLAERACAIKEAKHQDGARKEAVALEVQSVYAPL 197
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
A RLG+ +K ELEDL F L P ++++ + W R+ + I ++
Sbjct: 198 AHRLGIGHIKWELEDLSFRYLYPVEYKRI-----AKWLDEKRLDRQQYIQDVI 245
>gi|167620277|ref|ZP_02388908.1| GTP pyrophosphokinase [Burkholderia thailandensis Bt4]
gi|257139341|ref|ZP_05587603.1| GTP pyrophosphokinase [Burkholderia thailandensis E264]
Length = 747
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 289
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHRFAEYGVAAHW 349
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRVMLLGMV 87
I E FGDEVA LV V +L + + LR + + V+ G E LR MLL
Sbjct: 78 IAERFGDEVAHLVTDVRKLLRLGTVSLRAAQSVPVDAGRDAQAERRAQIEALRKMLLAFA 137
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 138 QDIRVVLIRLASRLQSLRHYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 197
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 198 RFEDPVTYKRI 208
>gi|444921552|ref|ZP_21241387.1| GTP pyrophosphokinase [Wohlfahrtiimonas chitiniclastica SH04]
gi|444507279|gb|ELV07456.1| GTP pyrophosphokinase [Wohlfahrtiimonas chitiniclastica SH04]
Length = 695
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 103/166 (62%), Gaps = 18/166 (10%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R+K +YSI+ KM K ++ D RA+RV+V + + CY +L
Sbjct: 212 GIEGEVSGRVKHIYSIWKKMTTKGKSFEELLDVRAVRVIVKN---------LSDCYRVLG 262
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH W P+ EFDDYI NPKP+GYQSLHTAV GP A+EVQIRT+KMHE+AE G+AAH
Sbjct: 263 MVHEKWPPLPREFDDYIANPKPNGYQSLHTAVLGPQNKAIEVQIRTRKMHEHAELGVAAH 322
Query: 397 WLYKETGNKLQSISSMDES----DIEASSSLSKDTDDHNPLDTDLF 438
W YKE+ L + ++ D EA+S SK+ LD DLF
Sbjct: 323 WHYKESDASLSQQAKLNRVRQLLDQEANSESSKEL-----LDKDLF 363
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR MLL +V+D + ++I LA+++ MR + P VA++T ++ LA+RLGL
Sbjct: 103 LRKMLLAIVEDVQTLVIILANQVVRMRHLKHEPDEIKILVAEQTRDVFAPLANRLGLSRF 162
Query: 139 KAELEDLCFAVLQPQIFRKMRADL 162
K ELED L+PQ ++ + +L
Sbjct: 163 KWELEDEVLHYLKPQDYKLISKNL 186
>gi|167824448|ref|ZP_02455919.1| GTP pyrophosphokinase [Burkholderia pseudomallei 9]
gi|226199671|ref|ZP_03795224.1| GTP diphosphokinase [Burkholderia pseudomallei Pakistan 9]
gi|225928257|gb|EEH24291.1| GTP diphosphokinase [Burkholderia pseudomallei Pakistan 9]
Length = 745
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLH V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHAVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 347
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRVMLLGMV 87
I FGDEVA LVA V +L + + LR + V+ G E LR MLL
Sbjct: 76 IAGHFGDEVAHLVADVRKLLRLGTVSLRAAQSAPVDAGRDAQAERRAQIEALRKMLLAFA 135
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 136 QDIRVVLIRLASRLQSLRYYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 195
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 196 RFEDPVTYKRI 206
>gi|17546295|ref|NP_519697.1| GTP pyrophosphokinase [Ralstonia solanacearum GMI1000]
gi|17428592|emb|CAD15278.1| probable gtp pyrophosphokinase (atp:gtp 3'-pyrophosphotransferase)
protein [Ralstonia solanacearum GMI1000]
Length = 746
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 88/129 (68%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KMR KD+ +YD RA RV+V D I+ CY++L
Sbjct: 247 GIHAEVSGRPKHIYSIWRKMRGKDLDFADLYDVRAFRVIVDD---------IKDCYTVLG 297
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH +W PI EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +AE+G+AAH
Sbjct: 298 FVHHMWQPIPKEFDDYISRPKTNGYKSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAH 357
Query: 397 WLYKETGNK 405
W YKE G+K
Sbjct: 358 WRYKEAGSK 366
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 26 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV-----NQGTLGHEEANDLR 80
A ++ +IE FG EVA+LV V +L I + N+ + LR
Sbjct: 80 ATDNEKAIEPAFGGEVARLVHDVRQLLRIGAIAGMASPAEAGVTRKNEAEARRAQVEALR 139
Query: 81 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 140
MLL D RVVLI+LA RL ++R + +A+ETL I+ LA+RLG+W LK
Sbjct: 140 KMLLAFAQDIRVVLIRLASRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKW 199
Query: 141 ELEDLCFAVLQPQIFRKM 158
ELEDL F P ++++
Sbjct: 200 ELEDLGFRFEDPDTYKRI 217
>gi|83719568|ref|YP_443112.1| GTP pyrophosphokinase [Burkholderia thailandensis E264]
gi|83653393|gb|ABC37456.1| GTP pyrophosphokinase [Burkholderia thailandensis E264]
Length = 725
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 217 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 267
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW
Sbjct: 268 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHRFAEYGVAAHW 327
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 328 RYKEAGAR 335
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQL-LRRHRRINVNQGTLGHEE----ANDLRVMLLGMV 87
I E FGDEVA LV V +L + + LR + + V+ G E LR MLL
Sbjct: 56 IAERFGDEVAHLVTDVRKLLRLGTVSLRAAQSVPVDAGRDAQAERRAQIEALRKMLLAFA 115
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA RL ++R A VA+ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 116 QDIRVVLIRLASRLQSLRHYAAAKIEPPPDVARETLEIYAPLANRLGIWQLKWELEDLAF 175
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 176 RFEDPVTYKRI 186
>gi|121605432|ref|YP_982761.1| (p)ppGpp synthetase I SpoT/RelA [Polaromonas naphthalenivorans CJ2]
gi|120594401|gb|ABM37840.1| (p)ppGpp synthetase I, SpoT/RelA [Polaromonas naphthalenivorans
CJ2]
Length = 756
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 90/141 (63%), Gaps = 10/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K +YSI KMR K +G +V+D RALRV+ D G CY+ L
Sbjct: 252 GIAALVQGRPKHIYSIVKKMRGKSLGFDQVFDIRALRVIAADVKG---------CYAALG 302
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH + P++GEFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AE+G+AAH
Sbjct: 303 FVHSCFSPVNGEFDDYIAKPKPNGYQSLHTVVRDEGGRAMEIQIRTQAMHDHAENGVAAH 362
Query: 397 WLYKETGNK-LQSISSMDESD 416
W YKE G K +S+ E D
Sbjct: 363 WAYKEAGTKGYAGVSASSEYD 383
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 13/141 (9%)
Query: 26 ACESLGS----IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE----EAN 77
+C+ L I + FG A L ++L Y+ + R V+ + H+ +
Sbjct: 87 SCQHLNKPQDVIAKAFGPSYAALAVETTKLIYLQRQTR-----AVDAKSQLHDDPAAQTE 141
Query: 78 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 137
++R MLL D RVV+++LA RL +R A A RA+A E+L ++ LA+RLG+W
Sbjct: 142 NVRRMLLAFSRDLRVVMLRLASRLQTLRYYAASRQAAPRALAHESLHVFAPLANRLGIWQ 201
Query: 138 LKAELEDLCFAVLQPQIFRKM 158
+K E+EDL F L+P ++++
Sbjct: 202 IKWEMEDLAFRFLEPDTYKQI 222
>gi|332284967|ref|YP_004416878.1| GTP pyrophosphokinase [Pusillimonas sp. T7-7]
gi|330428920|gb|AEC20254.1| GTP pyrophosphokinase [Pusillimonas sp. T7-7]
Length = 770
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 101/160 (63%), Gaps = 14/160 (8%)
Query: 257 LVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVV 316
+ A LE+EL + ++IP +S R K +YSI++KMR K + +++D RALR++V
Sbjct: 251 ITAAVSRLEREL--ADAHIPAQ---VSGRPKHIYSIWNKMRNKGIDFSQLFDLRALRIIV 305
Query: 317 GDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSAL 376
D+ + CY++L + H LW P+ EFDDYI PKP+GY+SLHT V G
Sbjct: 306 QDE---------RACYAVLALAHSLWTPVSDEFDDYISRPKPNGYRSLHTVVTDTQGRTF 356
Query: 377 EVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESD 416
E+QIRTQ+MHE+AE+G+AAHW YKE G + +S+ D
Sbjct: 357 EIQIRTQEMHEFAEYGMAAHWRYKEAGPRGGQVSAAGRYD 396
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+ + FG EV LV G L + L + + G ++ R MLL M D R+
Sbjct: 115 LRKAFGSEVVSLVQGTRALLRLGYLTGQ----AADSTASGTDQKEMQRKMLLAMAADLRI 170
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL++LA RL ++R + A+ET+ ++ LA+RLG+W +K E+EDL F L+P
Sbjct: 171 VLMRLASRLQSLRWYATTKIPCPSSFARETMELYTPLANRLGIWQIKWEMEDLAFRFLEP 230
Query: 153 QIFRKM 158
++ +
Sbjct: 231 VTYKAI 236
>gi|386333316|ref|YP_006029485.1| GTP diphosphokinase [Ralstonia solanacearum Po82]
gi|334195764|gb|AEG68949.1| GTP diphosphokinase [Ralstonia solanacearum Po82]
Length = 746
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 99/159 (62%), Gaps = 20/159 (12%)
Query: 258 VAC---EEALEKELLIS--------TSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKV 306
+AC E+ +E+E I T + G+ +S R K +YSI+ KMR K++ +
Sbjct: 217 IACLLDEKRIEREKFIGEAIARLQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADL 276
Query: 307 YDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHT 366
YD RA RV+V D I+ CY++L VH +W PI EFDDYI PK +GY SLHT
Sbjct: 277 YDVRAFRVIVDD---------IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHT 327
Query: 367 AVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
V G DG ALEVQIRT++MH +AE+G+AAHW YKE G+K
Sbjct: 328 VVIGDDGRALEVQIRTREMHHFAEYGVAAHWRYKEAGSK 366
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 26 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQL--LRRHRRINV---NQGTLGHEEANDLR 80
A ++ +IE FG EVA+LV V +L I + + NV N+ + LR
Sbjct: 80 AADNEKAIEPAFGAEVARLVHDVRQLLRIGAIAGMVSPAETNVTRKNEAEARRAQVEALR 139
Query: 81 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 140
MLL D RVVLI+LA RL ++R + +A+ETL I+ LA+RLG+W LK
Sbjct: 140 KMLLAFAQDIRVVLIRLASRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKW 199
Query: 141 ELEDLCFAVLQPQIFRKM 158
ELEDL F ++++
Sbjct: 200 ELEDLGFRFEDSDTYKRI 217
>gi|119476417|ref|ZP_01616768.1| GTP pyrophosphokinase [marine gamma proteobacterium HTCC2143]
gi|119450281|gb|EAW31516.1| GTP pyrophosphokinase [marine gamma proteobacterium HTCC2143]
Length = 741
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 89/129 (68%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E LS R K +YSI+ KM+RK +G +VYD RA+R++V P ++ CY+ L
Sbjct: 254 GIEADLSGRAKHIYSIWRKMQRKGIGFSQVYDIRAVRILV---------PDVRDCYAALG 304
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW I EFDDYI NPK +GY+SLHTAV GP+G ALE+QIRT MHE AE G+ AH
Sbjct: 305 LVHSLWRNIPNEFDDYIANPKDNGYRSLHTAVIGPEGKALEIQIRTFSMHEEAEFGICAH 364
Query: 397 WLYKETGNK 405
W YK + N+
Sbjct: 365 WRYKGSDNQ 373
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 87/149 (58%), Gaps = 9/149 (6%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T++A IL+ V + + + + FG+E+ L+ GV R++ ++ + I + L
Sbjct: 83 ETLIAAILYRAVREEKLQIELVAKNFGEEIVHLINGVLRMAAMSTV------ITGDNPVL 136
Query: 72 GHEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
G EA +++R ML+ +VDD RV L+KLA+R +R + PAK VA+E ++ L
Sbjct: 137 GQAEAQKDNIRKMLVALVDDVRVALVKLAERTCAIRMVKN-NPAKRYRVAREVHDVYAPL 195
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A RLG+ +K ELEDL F LQP ++K+
Sbjct: 196 AHRLGIGHIKWELEDLSFRYLQPVAYKKI 224
>gi|333915501|ref|YP_004489233.1| (p)ppGpp synthetase I SpoT/RelA [Delftia sp. Cs1-4]
gi|333745701|gb|AEF90878.1| (p)ppGpp synthetase I, SpoT/RelA [Delftia sp. Cs1-4]
Length = 749
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ T+ R K +YSI KMR K + +V+D RA+RVVV P I+ CY+ L
Sbjct: 262 ISATVQGRPKHIYSIVKKMRGKSLNFDQVFDIRAMRVVV---------PTIKDCYATLSW 312
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + PI+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 313 VHEQFTPIEAEFDDYIAKPKPNGYQSLHTVVRDETGRAIEIQIRTQAMHDHAEHGVAAHW 372
Query: 398 LYKETGNK 405
YKE G K
Sbjct: 373 AYKEAGTK 380
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE--EANDLRVMLLGMVDDP 90
I + FG+ A L ++L + Q + R + L E + ++R MLLG D
Sbjct: 107 IAKAFGENFATLAVETNKLMRVQQ---QARGAELGGQYLDDEATQTENVRKMLLGFSRDL 163
Query: 91 RVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 150
RVVL++LA RL +R A + +A+E L ++ LA+RLG+W +K ELEDL L
Sbjct: 164 RVVLLRLASRLQTLRYYAASKRPVSPGIAREALTVFAPLANRLGIWQIKWELEDLSLRFL 223
Query: 151 QPQIFRKM 158
+P+ +R++
Sbjct: 224 EPETYREV 231
>gi|160898297|ref|YP_001563879.1| (p)ppGpp synthetase I SpoT/RelA [Delftia acidovorans SPH-1]
gi|160363881|gb|ABX35494.1| (p)ppGpp synthetase I, SpoT/RelA [Delftia acidovorans SPH-1]
Length = 749
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ T+ R K +YSI KMR K + +V+D RA+RVVV P I+ CY+ L
Sbjct: 262 ISATVQGRPKHIYSIVKKMRGKSLNFDQVFDIRAMRVVV---------PTIKDCYATLSW 312
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + PI+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 313 VHEQFTPIEAEFDDYIAKPKPNGYQSLHTVVRDETGRAIEIQIRTQAMHDHAEHGVAAHW 372
Query: 398 LYKETGNK 405
YKE G K
Sbjct: 373 AYKEAGTK 380
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE--EANDLRVMLLGMVDDP 90
I + FG+ A L ++L + Q + R + L E + ++R MLLG D
Sbjct: 107 IAKAFGENFATLAVETNKLMRVQQ---QARGAELGGQYLDDEATQTENVRKMLLGFSRDL 163
Query: 91 RVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 150
RVVL++LA RL +R A + +A+E L ++ LA+RLG+W +K ELEDL L
Sbjct: 164 RVVLLRLASRLQTLRYYAASKRPVSPGIAREALTVFAPLANRLGIWQIKWELEDLSLRFL 223
Query: 151 QPQIFRKM 158
+P+ +R++
Sbjct: 224 EPETYREV 231
>gi|398833360|ref|ZP_10591494.1| (p)ppGpp synthetase, RelA/SpoT family [Herbaspirillum sp. YR522]
gi|398221717|gb|EJN08119.1| (p)ppGpp synthetase, RelA/SpoT family [Herbaspirillum sp. YR522]
Length = 750
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 90/138 (65%), Gaps = 9/138 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI++KMR K + ++YD RA RV+V D ++ CY++L
Sbjct: 250 GIRAEVSGRPKHIYSIWNKMRGKSLDFSELYDVRAFRVIVDD---------VKTCYTVLG 300
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH +W PI EFDDYI PK +GYQSLHT V DG A+EVQ+RT +MH +AE+G+AAH
Sbjct: 301 IVHDIWTPIPEEFDDYISRPKANGYQSLHTVVMAEDGRAIEVQVRTHEMHYFAEYGVAAH 360
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE+G + DE
Sbjct: 361 WRYKESGGSNFAAQKYDE 378
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 6/154 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V+T +AG+L ++ E +EE FG E A+LV GV +L + L + + V +G
Sbjct: 67 VETRLAGLLFELKMIHPELDERLEERFGRETAELVGGVRQLMRFHSLTFQAPQQEVLRGK 126
Query: 71 LGHEEA----NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAK--ARAVAQETLL 124
++A LR MLL M D RVVL++LA R+ +R +R A+ET
Sbjct: 127 HAAQQAASQVETLRKMLLAMASDMRVVLVRLASRVATLRYFAETKQENDASRQYARETFE 186
Query: 125 IWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
++ LA+RLG+W LK ELEDL F +P ++++
Sbjct: 187 LYAPLANRLGIWQLKWELEDLSFRFQEPATYKRI 220
>gi|332528308|ref|ZP_08404308.1| (p)ppGpp synthetase I SpoT/RelA [Hylemonella gracilis ATCC 19624]
gi|332042179|gb|EGI78505.1| (p)ppGpp synthetase I SpoT/RelA [Hylemonella gracilis ATCC 19624]
Length = 739
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
GMEV + R K +YSI KMR K + ++YD RALRVVV D + CY+ L
Sbjct: 233 GMEVEVQGRPKHIYSIIRKMRGKSLDFDRIYDVRALRVVVSD---------VPACYAALS 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH + P+ EFDDYI PKP+GYQSLHT V+ +G A+E+QIRTQ MHE+AE G+AAH
Sbjct: 284 WVHSHYTPVVEEFDDYIARPKPNGYQSLHTVVRDAEGRAIEIQIRTQAMHEHAELGVAAH 343
Query: 397 WLYKETGNK 405
W YKE G K
Sbjct: 344 WAYKEAGAK 352
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT--------LGHEEANDLRVMLL 84
I + FG+ A L ++L + + R + + + T LG + ++R MLL
Sbjct: 70 IAQAFGESYAALAVETTQLVVVQRQARAKAQRELLEKTGSEAAGMDLGAVQIENVRKMLL 129
Query: 85 GMVDDPRVVLIKLADRLHNMRTIYA----LPPAKARAVAQETLLIWCSLASRLGLWALKA 140
D RVVL++LA RL +R A LPP +A E+L ++ LA+RLG+W +K
Sbjct: 130 AFSRDLRVVLLRLASRLQTLRWFAASKRPLPPG----LAAESLHVFAPLANRLGIWEIKW 185
Query: 141 ELEDLCFAVLQPQIFRKM 158
E+EDL F L+P ++ +
Sbjct: 186 EMEDLAFRFLEPDTYKHI 203
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 593 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 652
+ +++ + K+ +LR +L WE+ L +S + G A G +V+ + ++ P I
Sbjct: 359 TADSAYDAKIAVLRQLLAWEQDL---SSGKDESASGLARGAAGAVLDDRIYVLT-PQATI 414
Query: 653 MRLRSGSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVEV 696
+ L G+T D A + G + V+G +V NT LK+G VE+
Sbjct: 415 VDLPQGATPVDFAYSLHTDLGHHCRGARVDGAMVPLNTPLKNGQTVEI 462
>gi|312880418|ref|ZP_07740218.1| (p)ppGpp synthetase I, SpoT/RelA [Aminomonas paucivorans DSM 12260]
gi|310783709|gb|EFQ24107.1| (p)ppGpp synthetase I, SpoT/RelA [Aminomonas paucivorans DSM 12260]
Length = 760
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 102/165 (61%), Gaps = 12/165 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +L+ R K YSI+ KMRRK++ + ++YD ALRVVVG + CY +L
Sbjct: 273 GVEASLNGRPKHFYSIYEKMRRKNLSLDQLYDLLALRVVVG---------GLAECYQVLG 323
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 324 LVHTIWKPIPGQFDDYIANPKSNMYQSLHTTVLGPSGEPLEVQIRTWEMHRLAEYGIAAH 383
Query: 397 WLYKETG---NKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 438
W YKE N+L + +E+ S+ T+ + L TD+
Sbjct: 384 WHYKEGKQRVNQLDRRLTWIRQVLESQQDGSEPTEFLDNLKTDVL 428
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 91/149 (61%), Gaps = 12/149 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V+T+ A +LHDV++D ++E FG EV LV GV++L + +
Sbjct: 108 VETLSAALLHDVLEDTPVGDAVLKERFGPEVLTLVDGVTKLG------------KLPFKS 155
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +A +LR M L M D RVVLIKLADRLHNMRT+ A + A+A+ETL I+ LA
Sbjct: 156 IEDYQAENLRKMFLVMAKDIRVVLIKLADRLHNMRTLQAHRRDRQLAIAKETLEIYAPLA 215
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMR 159
RLG++ +K ELEDL F +L P+I+ ++R
Sbjct: 216 HRLGIYQVKRELEDLSFKILDPEIYYEIR 244
>gi|33594456|ref|NP_882100.1| GTP pyrophosphokinase [Bordetella pertussis Tohama I]
gi|384205753|ref|YP_005591492.1| putative GTP pyrophosphokinase [Bordetella pertussis CS]
gi|408416485|ref|YP_006627192.1| GTP pyrophosphokinase [Bordetella pertussis 18323]
gi|33564531|emb|CAE43846.1| putative GTP pyrophosphokinase [Bordetella pertussis Tohama I]
gi|332383867|gb|AEE68714.1| putative GTP pyrophosphokinase [Bordetella pertussis CS]
gi|401778655|emb|CCJ64097.1| putative GTP pyrophosphokinase [Bordetella pertussis 18323]
Length = 737
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 9/144 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W P+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAH 361
Query: 397 WLYKETGNKLQSISSMDESDIEAS 420
W YKE G + +++ E D + S
Sbjct: 362 WRYKEAGARGGQVAASSEYDRQLS 385
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+ EFG EVA+LV G L + + R G+ + R MLL M D R+
Sbjct: 100 VASEFGVEVARLVQGARALLRLGIVARHASDSEAESGSQKEMQ----RKMLLAMAADLRI 155
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL++LA RL ++R A A+ETL ++ LA+RLG+W LK E+EDL F L+P
Sbjct: 156 VLMRLASRLQSLRWHAETKTPCAAGFARETLDLYTPLANRLGIWQLKWEMEDLAFRFLEP 215
Query: 153 QIFRKM 158
+ ++++
Sbjct: 216 ERYKQI 221
>gi|187477599|ref|YP_785623.1| GTP pyrophosphokinase [Bordetella avium 197N]
gi|115422185|emb|CAJ48709.1| putative GTP pyrophosphokinase [Bordetella avium 197N]
Length = 743
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 104/164 (63%), Gaps = 17/164 (10%)
Query: 261 EEALEKELLISTSYI--------PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 312
E+ +++E I+ + + G++ +S R K +YSI++K R K + K+YD RAL
Sbjct: 225 EKRVQREAFITDTIVRIQAVLARAGIKGEVSGRPKHIYSIWNKTRIKGLDFSKLYDLRAL 284
Query: 313 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 372
RV+V D ++ CYS L +VH LW PI EFDDYI PKP+GY+SLHT V +
Sbjct: 285 RVIVDD---------VRDCYSALALVHELWTPIPEEFDDYISRPKPNGYRSLHTVVMDEE 335
Query: 373 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESD 416
G A EVQIRT++MH++AE+G+AAHW YKE G K +++ + D
Sbjct: 336 GRAFEVQIRTREMHQFAEYGMAAHWRYKEAGAKGGQVAASSDYD 379
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Query: 37 FGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIK 96
FG EV +LV G L + + R+ + + + R MLL M D R+VL++
Sbjct: 102 FGAEVVRLVQGARALLRLGVVARQ----AADTAAVTGSQKEMQRKMLLAMAADLRIVLMR 157
Query: 97 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 156
LA RL ++R A A+ETL ++ LA+RLG+W +K E+EDL F L+P ++
Sbjct: 158 LASRLQSLRWHAETKTPCNPAFARETLDLYTPLANRLGIWQIKWEMEDLSFRFLEPDRYK 217
Query: 157 KM 158
++
Sbjct: 218 EI 219
>gi|412341915|ref|YP_006970670.1| GTP pyrophosphokinase [Bordetella bronchiseptica 253]
gi|408771749|emb|CCJ56553.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica 253]
Length = 737
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 9/144 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W P+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAH 361
Query: 397 WLYKETGNKLQSISSMDESDIEAS 420
W YKE G + +++ E D + S
Sbjct: 362 WRYKEAGARGGQVAASSEYDRQLS 385
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+ EFG EVA+LV G L + + R G+ + R MLL M D R+
Sbjct: 100 VASEFGVEVARLVQGARALLRLGIVARHASDSEAESGSQKEMQ----RKMLLAMAADLRI 155
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL++LA RL ++R A A+ETL ++ LA+RLG+W LK E+EDL F L+P
Sbjct: 156 VLMRLASRLQSLRWHAETRTPCAAGFARETLDLYTPLANRLGIWQLKWEMEDLAFRFLEP 215
Query: 153 QIFRKM 158
+ ++++
Sbjct: 216 ERYKQI 221
>gi|410473818|ref|YP_006897099.1| GTP pyrophosphokinase [Bordetella parapertussis Bpp5]
gi|408443928|emb|CCJ50622.1| putative GTP pyrophosphokinase [Bordetella parapertussis Bpp5]
Length = 737
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 9/144 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W P+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAH 361
Query: 397 WLYKETGNKLQSISSMDESDIEAS 420
W YKE G + +++ E D + S
Sbjct: 362 WRYKEAGARGGQVAASSEYDRQLS 385
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+ EFG EVA+LV G L + + R G+ + R MLL M D R+
Sbjct: 100 VASEFGVEVARLVQGALALLRLGIVARHASDSEAESGSQKEMQ----RKMLLAMAADLRI 155
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL++LA RL ++R A A+ETL ++ LA+RLG+W LK E+EDL F L+P
Sbjct: 156 VLMRLASRLQSLRWHAETRTPCAAGFARETLDLYTPLANRLGIWQLKWEMEDLAFRFLEP 215
Query: 153 QIFRKM 158
+ ++++
Sbjct: 216 ERYKQI 221
>gi|33602751|ref|NP_890311.1| GTP pyrophosphokinase [Bordetella bronchiseptica RB50]
gi|427815767|ref|ZP_18982831.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica 1289]
gi|33577193|emb|CAE35750.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica RB50]
gi|410566767|emb|CCN24336.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica 1289]
Length = 737
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 9/144 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W P+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAH 361
Query: 397 WLYKETGNKLQSISSMDESDIEAS 420
W YKE G + +++ E D + S
Sbjct: 362 WRYKEAGARGGQVAASSEYDRQLS 385
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+ EFG EVA+LV G L + + R G+ + R MLL M D R+
Sbjct: 100 VASEFGVEVARLVQGARALLRLGIVARHASDSEAESGSQKEMQ----RKMLLAMAADLRI 155
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL++LA RL ++R A A+ETL ++ LA+RLG+W LK E+EDL F L+P
Sbjct: 156 VLMRLASRLQSLRWHAETRTPCAAGFARETLDLYTPLANRLGIWQLKWEMEDLAFRFLEP 215
Query: 153 QIFRKM 158
+ ++++
Sbjct: 216 ERYKQI 221
>gi|427825820|ref|ZP_18992882.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica Bbr77]
gi|410591085|emb|CCN06182.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica Bbr77]
Length = 737
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 9/144 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W P+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAH 361
Query: 397 WLYKETGNKLQSISSMDESDIEAS 420
W YKE G + +++ E D + S
Sbjct: 362 WRYKEAGARGGQVAASSEYDRQLS 385
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+ EFG EVA+LV G L + + R G+ + R MLL M D R+
Sbjct: 100 VASEFGVEVARLVQGARALLRLGIVARHASDSEAESGSQKEMQ----RKMLLAMAADLRI 155
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL++LA RL ++R A A+ETL ++ LA+RLG+W LK E+EDL F L+P
Sbjct: 156 VLMRLASRLQSLRWHAETKTPCAAGFARETLDLYTPLANRLGIWQLKWEMEDLAFRFLEP 215
Query: 153 QIFRKM 158
+ +R++
Sbjct: 216 ERYRQI 221
>gi|410421226|ref|YP_006901675.1| GTP pyrophosphokinase [Bordetella bronchiseptica MO149]
gi|408448521|emb|CCJ60204.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica MO149]
Length = 737
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 9/144 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W P+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAH 361
Query: 397 WLYKETGNKLQSISSMDESDIEAS 420
W YKE G + +++ E D + S
Sbjct: 362 WRYKEAGARGGQVAASSEYDRQLS 385
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+ EFG EVA+LV G L + + R G+ + R MLL M D R+
Sbjct: 100 VASEFGVEVARLVQGARALLRLGIVARHASDSEAESGSQKEMQ----RKMLLAMAADLRI 155
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL++LA RL ++R A A+ETL ++ LA+RLG+W LK E+EDL F L+P
Sbjct: 156 VLMRLASRLQSLRWHAETKTPCAAGFARETLDLYTPLANRLGIWQLKWEMEDLAFRFLEP 215
Query: 153 QIFRKM 158
+ ++++
Sbjct: 216 ERYKQI 221
>gi|374584179|ref|ZP_09657271.1| LOW QUALITY PROTEIN: hypothetical protein Lepil_0327 [Leptonema
illini DSM 21528]
gi|373873040|gb|EHQ05034.1| LOW QUALITY PROTEIN: hypothetical protein Lepil_0327 [Leptonema
illini DSM 21528]
Length = 690
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 103/168 (61%), Gaps = 20/168 (11%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+ R K LYS++SKM++ GIH++YD R +R++V + I+ CY L IVH L
Sbjct: 249 IDGRAKHLYSVYSKMQKYGKGIHEIYDLRGVRIIVDE---------IRDCYGALGIVHTL 299
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK- 400
W P+ G F DYI PK +GYQSLHT V GPDG LEVQIRTQ+M E AEHG+AAHWLYK
Sbjct: 300 WPPLPGRFKDYIAMPKSNGYQSLHTTVVGPDGRPLEVQIRTQEMDERAEHGIAAHWLYKN 359
Query: 401 ----ETGNK-----LQSISSMDESDIEASSSLSKD-TDDHNPLDTDLF 438
E G++ L+++S + + S +D D+ NP D +F
Sbjct: 360 DMRAERGDQGKLEWLRTLSRITQEFQGDSKDFIEDLRDELNPKDVYVF 407
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 94/150 (62%), Gaps = 2/150 (1%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ A +LHDVV+D SI EFG+EV LV V+++S + + + ++ +
Sbjct: 71 TIAAALLHDVVEDTSFGEDSIRREFGEEVNMLVRAVTKISLVKKDSMKDQKPSSE--LKA 128
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
E A ++R+MLL D RV+LIKLAD+LHNM+T+ P K +A+E + I+ +A R
Sbjct: 129 REAAENIRLMLLATTRDVRVILIKLADKLHNMQTLGFQKPHKVERIAREVIDIYAPIAGR 188
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADL 162
LG++ +K+ELEDL F LQP+ F ++++L
Sbjct: 189 LGMFRMKSELEDLAFGALQPEEFETLQSEL 218
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 635 DSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKD 690
D + P +V + P G+I+ L GST D A ++ GL K VN ++V TEL+
Sbjct: 397 DELNPKDVYVFT-PKGDIINLPQGSTVLDFAFRIHTDIGLRCKSAKVNDRIVPLRTELRS 455
Query: 691 GDIVEV 696
GD +E+
Sbjct: 456 GDRIEI 461
>gi|413962948|ref|ZP_11402175.1| (p)ppGpp synthetase SpoT/RelA [Burkholderia sp. SJ98]
gi|413928780|gb|EKS68068.1| (p)ppGpp synthetase SpoT/RelA [Burkholderia sp. SJ98]
Length = 740
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 96/142 (67%), Gaps = 14/142 (9%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
L+KEL T++I + +S R K +YSI+ KMR K + ++ D RA RV+VGD
Sbjct: 230 LQKEL--ETAHI---KADVSGRPKHIYSIWKKMRGKQLDFAELNDVRAFRVIVGD----- 279
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT
Sbjct: 280 ----IKDCYTVLGIVHNLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTY 335
Query: 384 KMHEYAEHGLAAHWLYKETGNK 405
+MH++AE+G+AAHW YKE G +
Sbjct: 336 EMHQFAEYGVAAHWRYKEAGAR 357
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGMV 87
I E FG EV +LV V +L + + R + + T + A LR MLL
Sbjct: 78 IAERFGPEVQRLVGDVRKLLRLGSVSSRATLAELPENTRDAQAARRAQVEALRKMLLAFA 137
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA R+ +R A + V +ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 138 QDIRVVLIRLASRVQTLRYYAAHKIEPSPDVPRETLEIYAPLANRLGIWQLKWELEDLSF 197
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 198 RFEDPVTYKRI 208
>gi|237748987|ref|ZP_04579467.1| GTP pyrophosphokinase [Oxalobacter formigenes OXCC13]
gi|229380349|gb|EEO30440.1| GTP pyrophosphokinase [Oxalobacter formigenes OXCC13]
Length = 747
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 87/130 (66%), Gaps = 9/130 (6%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI++KMR K + ++YD RA+R++V D I+ C+++LDIV+RLW P
Sbjct: 255 RPKHIYSIYNKMRGKSLDFSQMYDLRAVRIIVDD---------IKSCFTVLDIVNRLWTP 305
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I EFDDYI PKP+GYQSLHT V +G EVQIRTQ+MH AE+G+AAHW YKETG
Sbjct: 306 ILEEFDDYISRPKPNGYQSLHTVVVAENGQPFEVQIRTQEMHRLAEYGVAAHWRYKETGG 365
Query: 405 KLQSISSMDE 414
DE
Sbjct: 366 STFVAQQYDE 375
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI--NVNQGT 70
T AG+L + E IE FG EV+ LV V +L + L I N
Sbjct: 68 TRSAGLLAVLPRYNPEIASQIESRFGVEVSNLVDSVIKLFKLRDLTGNLEEIAQGKNAAQ 127
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPP--AKARAVAQETLLIWCS 128
+ +A LR MLL M D RVV+I+LA R+ ++R + + + R A+ETL I+
Sbjct: 128 IRKAQAETLRKMLLAMAADMRVVMIRLAARMASLRYLAKIKKDTSDRRQYAKETLEIYAP 187
Query: 129 LASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
LA+RLG+W +K ELEDL F ++P ++ + L + R
Sbjct: 188 LANRLGIWQVKWELEDLSFRFIEPDAYKNIAKSLEEKRTER 228
>gi|377820441|ref|YP_004976812.1| (p)ppGpp synthetase SpoT/RelA [Burkholderia sp. YI23]
gi|357935276|gb|AET88835.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Burkholderia sp. YI23]
Length = 740
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 95/142 (66%), Gaps = 14/142 (9%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
L+KEL T++I +S R K +YSI+ KMR K + ++ D RA RV+VGD
Sbjct: 230 LQKEL--DTAHI---RADVSGRPKHIYSIWKKMRGKHLDFSELNDVRAFRVIVGD----- 279
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT
Sbjct: 280 ----IKDCYTVLGIVHNLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTY 335
Query: 384 KMHEYAEHGLAAHWLYKETGNK 405
+MH++AE+G+AAHW YKE G +
Sbjct: 336 EMHQFAEYGVAAHWRYKEAGTR 357
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND-----LRVMLLGMV 87
I E FG EV +LV V +L + + R ++ + T + A LR MLL
Sbjct: 78 IAERFGPEVQRLVGDVRKLLRLGSVSSRATLADLPENTRDAQAARRAQVEALRKMLLAFA 137
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVLI+LA R+ ++R A + V +ETL I+ LA+RLG+W LK ELEDL F
Sbjct: 138 QDIRVVLIRLASRVQSLRYHAAHKIDPSPDVPRETLEIYAPLANRLGIWQLKWELEDLSF 197
Query: 148 AVLQPQIFRKM 158
P ++++
Sbjct: 198 RFEDPVTYKRI 208
>gi|445497639|ref|ZP_21464494.1| GTP pyrophosphokinase RelA [Janthinobacterium sp. HH01]
gi|444787634|gb|ELX09182.1| GTP pyrophosphokinase RelA [Janthinobacterium sp. HH01]
Length = 752
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 9/138 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+SKM+ K++ +YD RA RV+V D ++ CY++L
Sbjct: 253 GIQAEVFGRPKHIYSIWSKMKGKELDFTDLYDVRAFRVIVAD---------VKTCYTVLG 303
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W PI EFDDYI PK +GYQSLHT V DG LEVQIRTQ+MH +AE+G+AAH
Sbjct: 304 VVHNIWTPIPKEFDDYISRPKSNGYQSLHTVVTAEDGRPLEVQIRTQEMHGFAEYGVAAH 363
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE G + DE
Sbjct: 364 WRYKEAGGSNFAGQKYDE 381
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 9/163 (5%)
Query: 5 SSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI 64
+S + V+T +AG++ ++ IE FG EV++LVAGV +L + +L + +
Sbjct: 61 ASMRTDVETRIAGLMFELTLLDTAQAPIIEPRFGHEVSELVAGVRQLIRLRELTQTQGQG 120
Query: 65 NV-------NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTI--YALPPAKA 115
N + + LR MLL M D RVVL++LA + +R L
Sbjct: 121 QPGAVARGRNAAQMAVAQVETLRKMLLAMASDMRVVLVRLASCVTTLRYFADIKLFNDMT 180
Query: 116 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A +ETL ++ LA+RLG+W LK ELEDL F ++P+ ++++
Sbjct: 181 CAYGRETLDLYAPLANRLGIWQLKWELEDLSFRFIEPEAYKRI 223
>gi|386286490|ref|ZP_10063680.1| GTP pyrophosphokinase [gamma proteobacterium BDW918]
gi|385280640|gb|EIF44562.1| GTP pyrophosphokinase [gamma proteobacterium BDW918]
Length = 745
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 91/138 (65%), Gaps = 9/138 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ ++ R K +YSI+ KM+RK +G +VYD RA+RV+V P + CY+ L
Sbjct: 255 NIQADIAGRAKHIYSIWRKMQRKGIGFSQVYDIRAVRVLV---------PDTKSCYAALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW I EFDDYI NPK +GY+SLHTAV GPDG LE+QIRT+ MHE AE G+ +H
Sbjct: 306 LVHGLWRNIPNEFDDYIANPKENGYRSLHTAVIGPDGKVLEIQIRTRAMHEEAEFGVCSH 365
Query: 397 WLYKETGNKLQSISSMDE 414
W+YK +S +S DE
Sbjct: 366 WMYKGADKSAKSSNSYDE 383
Score = 89.4 bits (220), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 88/151 (58%), Gaps = 12/151 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRIN--VNQG 69
D+++A L V ++ S+ ++E +FG VAKLV GV ++ I+ R+N ++
Sbjct: 83 DSLIAATLFRAVRESRLSMSALERDFGRSVAKLVDGVLGMAAIS-------RVNAELDAP 135
Query: 70 TLGHEEAND--LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWC 127
LG EA +R ML+ +VDD RV LIKLA+R +R + P + R VA+E I+
Sbjct: 136 VLGQSEAQSETIRKMLVALVDDVRVALIKLAERTSAIRAVKNKPEKRYR-VAREVADIYA 194
Query: 128 SLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA RLG+ +K ELEDL F LQP ++K+
Sbjct: 195 PLAHRLGIGHIKWELEDLSFRYLQPLAYKKI 225
>gi|126667182|ref|ZP_01738156.1| GTP pyrophosphokinase [Marinobacter sp. ELB17]
gi|126628338|gb|EAZ98961.1| GTP pyrophosphokinase [Marinobacter sp. ELB17]
Length = 743
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 112/181 (61%), Gaps = 19/181 (10%)
Query: 229 KFLHDLAKSSEAQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSRLK 287
++LH+ A +K AK++ + + S + ALE EL + G++ +S R+K
Sbjct: 216 RYLHETA----YKKIAKLLDEKRLNRESYIKRVVAALESELGST-----GIKGDVSGRVK 266
Query: 288 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 347
+YSI+ KMRRK + +VYD RA+R++V P ++ CY++L IVH LW I
Sbjct: 267 HIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAVLGIVHGLWRHIPN 317
Query: 348 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQ 407
EFDDYI N K +GYQSLHTAV GP+G +EVQIRT MHE AE G+ AHWLYK T K +
Sbjct: 318 EFDDYIANVKENGYQSLHTAVIGPEGKVMEVQIRTHDMHEEAELGVCAHWLYKGTDTKNK 377
Query: 408 S 408
S
Sbjct: 378 S 378
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 98/176 (55%), Gaps = 13/176 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
++ A +L+ V + +L ++ +EFGDEVA L++GV +++ I+ + H + N LG
Sbjct: 84 SLTAAVLYRAVREERVTLEAVRKEFGDEVAGLISGVLQMAAISSI---HHPLKGN--VLG 138
Query: 73 HEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
E +++R ML+ MVDD RV LIKLA+R +R + P K VA+E I+ LA
Sbjct: 139 QSEGQLDNVRKMLVTMVDDVRVALIKLAERTCAIRGVKDALPEKRMRVAREVSDIYAPLA 198
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIVSS 184
RLG+ +K ELEDL F L ++K +A + + NR Y +R+ + S
Sbjct: 199 HRLGIGYIKWELEDLSFRYLHETAYKK----IAKLLDEKRLNRESYIKRVVAALES 250
>gi|120610273|ref|YP_969951.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax citrulli AAC00-1]
gi|120588737|gb|ABM32177.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax citrulli AAC00-1]
Length = 753
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 90/140 (64%), Gaps = 10/140 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ T+ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 254 ISATVQGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVVV---------PTVKDCYAALSW 304
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + PID EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 305 VHSHFKPIDAEFDDYIAKPKPNGYQSLHTVVRDEAGKAIEIQIRTQAMHDHAEHGVAAHW 364
Query: 398 LYKETGNK-LQSISSMDESD 416
YKE G K +S+ E D
Sbjct: 365 AYKEAGAKGYAGVSASSEYD 384
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 17/143 (11%)
Query: 26 ACESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH------EE 75
AC L EE FG A L ++L + R + GH
Sbjct: 88 ACSHLNKPEEVIAKAFGQNFATLAVETTKLMRVQHHAREAQ-------LAGHAVDDPATH 140
Query: 76 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 135
++R MLL D RVV+++LA RL +R A + ++A+E L ++ LA+RLG+
Sbjct: 141 TENVRKMLLAFSRDLRVVMLRLASRLQTLRFYAASKRPVSPSIAREALQVFAPLANRLGI 200
Query: 136 WALKAELEDLCFAVLQPQIFRKM 158
W +K ELEDL F L+P ++++
Sbjct: 201 WQMKWELEDLSFRFLEPDTYKQI 223
>gi|299066585|emb|CBJ37775.1| GTP diphosphokinase [Ralstonia solanacearum CMR15]
Length = 746
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 88/129 (68%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L
Sbjct: 247 GIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLG 297
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH +W PI EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +AE+G+AAH
Sbjct: 298 FVHHMWQPIPKEFDDYISRPKTNGYKSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAH 357
Query: 397 WLYKETGNK 405
W YKE G+K
Sbjct: 358 WRYKEAGSK 366
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 26 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLL-----RRHRRINVNQGTLGHEEANDLR 80
A ++ +IE FGDEVA+LV V +L I + N+ + LR
Sbjct: 80 ATDNERAIEPAFGDEVARLVHDVRQLLRIGAIAGMVSPAEAGVTRKNEAEARRAQVEALR 139
Query: 81 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 140
MLL D RVVLI+LA RL ++R + +A+ETL I+ LA+RLG+W LK
Sbjct: 140 KMLLAFAQDIRVVLIRLASRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKW 199
Query: 141 ELEDLCFAVLQPQIFRKM 158
ELEDL F ++++
Sbjct: 200 ELEDLGFRFEDSDTYKRI 217
>gi|421887916|ref|ZP_16319044.1| GTP diphosphokinase [Ralstonia solanacearum K60-1]
gi|378966725|emb|CCF95792.1| GTP diphosphokinase [Ralstonia solanacearum K60-1]
Length = 746
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 269 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 328
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 329 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 388
+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 389 AEHGLAAHWLYKETGNK 405
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 26 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQL--LRRHRRINV---NQGTLGHEEANDLR 80
A ++ +IE FG EVA+LV V +L I + + NV N+ + LR
Sbjct: 80 AADNEKAIEPAFGAEVARLVHDVRQLLRIGAIAGMVNPAETNVTRKNEAEARRAQVEALR 139
Query: 81 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 140
MLL D RVVLI+LA RL ++R + +A+ETL I+ LA+RLG+W LK
Sbjct: 140 KMLLAFAQDIRVVLIRLASRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKW 199
Query: 141 ELEDLCFAVLQPQIFRKM 158
ELEDL F ++++
Sbjct: 200 ELEDLGFRFEDSDTYKRI 217
>gi|344174549|emb|CCA86347.1| GTP diphosphokinase [Ralstonia syzygii R24]
Length = 746
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 91/137 (66%), Gaps = 9/137 (6%)
Query: 269 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 328
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 329 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 388
+ CY++L VH +W P+ EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPVPREFDDYISRPKANGYKSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 389 AEHGLAAHWLYKETGNK 405
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 32 SIEEEFGDEVAKLVAGVSRLSYINQL--LRRHRRINV---NQGTLGHEEANDLRVMLLGM 86
+IE FG EV +LV V +L I + + NV N+ + LR MLL
Sbjct: 86 AIEPAFGAEVVRLVHDVRQLLRIGAIAGMVSPAEANVTRKNEAEARRAQVEALRKMLLAF 145
Query: 87 VDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 146
D RVVLI+LA RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 146 AQDIRVVLIRLASRLQSLRWLAQNKRPAPEGMARETLDIYAPLANRLGIWQLKWELEDLG 205
Query: 147 FAVLQPQIFRKM 158
F P ++++
Sbjct: 206 FRFEDPDTYKRI 217
>gi|344167567|emb|CCA79805.1| GTP diphosphokinase [blood disease bacterium R229]
Length = 746
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 91/137 (66%), Gaps = 9/137 (6%)
Query: 269 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 328
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 329 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 388
+ CY++L VH +W P+ EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPVPREFDDYISRPKANGYKSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 389 AEHGLAAHWLYKETGNK 405
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
Query: 32 SIEEEFGDEVAKLVAGVSRLSYINQL--LRRHRRINV---NQGTLGHEEANDLRVMLLGM 86
+IE FG EVA+LV V +L I + + NV N+ + LR MLL
Sbjct: 86 AIEPAFGAEVARLVHDVRQLLRIGAIAGMVSPAEANVTRKNEAEARRAQVEALRKMLLAF 145
Query: 87 VDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 146
D RVVLI+LA RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 146 AQDIRVVLIRLASRLQSLRWLAQNKRPAPEGMARETLDIYAPLANRLGVWQLKWELEDLG 205
Query: 147 FAVLQPQIFRKM 158
F P ++++
Sbjct: 206 FRFEDPDTYKRI 217
>gi|260219530|emb|CBA26375.1| GTP pyrophosphokinase [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 745
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 84/129 (65%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ T+ R K +YSI KMR K +G +VYD RALR+VV P + CY+ L
Sbjct: 254 GVHATVQGRPKHIYSIVKKMRGKSLGFDQVYDIRALRIVV---------PTVPDCYAALS 304
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH + PI EFDDYI PKP+GYQSLHT V+ +EVQIRTQ MH++AEHG+AAH
Sbjct: 305 LVHTRFTPITEEFDDYIARPKPNGYQSLHTVVRDAGSQPIEVQIRTQAMHDHAEHGVAAH 364
Query: 397 WLYKETGNK 405
W YKE G K
Sbjct: 365 WAYKEAGAK 373
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 21/165 (12%)
Query: 15 VAGILHDVVDD-----------ACESLGS----IEEEFGDEVAKLVAGVSRLSYINQLLR 59
VA ILH + AC+ L I + FGD A L ++L + ++ R
Sbjct: 60 VAAILHTIGGSEAMQAASYLVYACDHLNKPHEIIAKAFGDNFADLALETTKLVRLQRMAR 119
Query: 60 ------RHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA 113
H + +R MLL D RVV+++LA RL +R A
Sbjct: 120 LAQQSASHSSSAAPMAQTAAAQTESVRKMLLAFSKDLRVVMLRLASRLQTLRHFAATKLP 179
Query: 114 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
+A E L ++ LA+RLG+W +K E+EDL F L+P ++++
Sbjct: 180 VPPGLASEALQVFAPLANRLGIWEIKWEMEDLSFRFLEPDTYKQV 224
Score = 38.9 bits (89), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 599 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSV-VPGEVVIVCWPNGEIMRLRS 657
+ K+ +LR +L WE L A+ PD + + + V P+ I+ L
Sbjct: 386 DAKIAVLRQLLAWERDLSG------------AHATPDGQGMFDDRIYVLTPDAAIVELPQ 433
Query: 658 GSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVEV 696
G+TA D A V G + V+G +V NT LK+G VEV
Sbjct: 434 GATAVDFAYSVHTNLGHRCRGAKVDGAMVPLNTPLKNGQTVEV 476
>gi|407002062|gb|EKE18918.1| hypothetical protein ACD_9C00200G0011 [uncultured bacterium]
Length = 494
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 120/397 (30%), Positives = 182/397 (45%), Gaps = 116/397 (29%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ AG++HDV +D +L IE++FG E+A LV GV++L I LR
Sbjct: 67 TIAAGLMHDVPEDTEFTLEDIEKKFGKEIAHLVDGVTKLGRIK--LRG-----------S 113
Query: 73 HEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
HEE +LR MLL A+A + +I LA
Sbjct: 114 HEEYYLENLRKMLL--------------------------------AMASDIRVILIKLA 141
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP-RNRVGYSRRITTIVSSPPLDE 189
RL ++ L L P +++ + +++P NR+G +
Sbjct: 142 DRL------HNMQTLNH--LPPDKQQRIAQETMEIFAPIANRLGIG------------EI 181
Query: 190 RTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQD 249
+T D SF D+ S+ LE D ++R+++ VQ
Sbjct: 182 KTQLQDLSFRYLDKENYSLVKELEE-------KDYKERSRY----------------VQQ 218
Query: 250 AGIALTSLVACEEALEKELLISTSYIPGMEVTLS-SRLKSLYSIFSKMRRKDVGIHKVYD 308
A + +E ++KE G+++ + R KS+YS+F K+++ D+ I+++YD
Sbjct: 219 A------IDELKEEIKKE---------GIQIIQADGRAKSIYSLFLKLQKHDMDINRIYD 263
Query: 309 ARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAV 368
A+R++V P + CY L IVH+ + P+ G DYI PKP+GYQS+HT V
Sbjct: 264 LAAVRIIV---------PEVADCYETLGIVHKKYRPMIGRIKDYISLPKPNGYQSIHTTV 314
Query: 369 QGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
GPDG LEVQIRT KMH AE G+AAHW+Y E +
Sbjct: 315 FGPDGKILEVQIRTIKMHNEAEFGIAAHWIYTENKKR 351
>gi|300691314|ref|YP_003752309.1| GTP diphosphokinase [Ralstonia solanacearum PSI07]
gi|299078374|emb|CBJ51024.1| GTP diphosphokinase [Ralstonia solanacearum PSI07]
Length = 746
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 91/137 (66%), Gaps = 9/137 (6%)
Query: 269 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 328
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 329 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 388
+ CY++L VH +W P+ EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPVPREFDDYISRPKANGYKSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 389 AEHGLAAHWLYKETGNK 405
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
Query: 32 SIEEEFGDEVAKLVAGVSRLSYINQL--LRRHRRINV---NQGTLGHEEANDLRVMLLGM 86
+IE FG EVA+LV V +L I + + NV N+ + LR MLL
Sbjct: 86 AIEPAFGAEVARLVHDVRQLLRIGAIAGMVSPAEANVTRKNEAEARRAQVEALRKMLLAF 145
Query: 87 VDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLC 146
D RVVLI+LA RL ++R + +A+ETL I+ LA+RLG+W LK ELEDL
Sbjct: 146 AQDIRVVLIRLASRLQSLRWLAQNKRPAPEGMARETLDIYAPLANRLGIWQLKWELEDLG 205
Query: 147 FAVLQPQIFRKM 158
F P ++++
Sbjct: 206 FRFEDPDTYKRI 217
>gi|83748296|ref|ZP_00945321.1| GTP pyrophosphokinase / Guanosine-3',5'-bis(Diphosphate)
3'-pyrophosphohydrolase [Ralstonia solanacearum UW551]
gi|83725028|gb|EAP72181.1| GTP pyrophosphokinase / Guanosine-3',5'-bis(Diphosphate)
3'-pyrophosphohydrolase [Ralstonia solanacearum UW551]
Length = 792
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 96/153 (62%), Gaps = 17/153 (11%)
Query: 261 EEALEKELLIS--------TSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 312
E+ +E+E I T + G+ +S R K +YSI+ KMR K++ +YD RA
Sbjct: 269 EKRIEREKFIGEAIARLQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAF 328
Query: 313 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 372
RV+V D I+ CY++L VH +W PI EFDDYI PK +GY SLHT V G D
Sbjct: 329 RVIVDD---------IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDD 379
Query: 373 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
G ALEVQIRT++MH +AE+G+AAHW YKE G+K
Sbjct: 380 GRALEVQIRTREMHHFAEYGVAAHWRYKEAGSK 412
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 26 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQL--LRRHRRINV---NQGTLGHEEANDLR 80
A ++ +IE FG EVA+LV V +L I + + NV N+ + LR
Sbjct: 126 AADNEKAIEPAFGAEVARLVHDVRQLLRIGAIAGMVSPAETNVTRKNEAEARRAQVEALR 185
Query: 81 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 140
MLL D RVVLI+LA RL ++R + +A+ETL I+ LA+RLG+W LK
Sbjct: 186 KMLLAFAQDIRVVLIRLASRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKW 245
Query: 141 ELEDLCFAVLQPQIFRKM 158
ELEDL F ++++
Sbjct: 246 ELEDLGFRFEDSDTYKRI 263
>gi|207742944|ref|YP_002259336.1| gtp pyrophosphokinase (atp:gtp 3'-pyrophosphotransferase) protein
[Ralstonia solanacearum IPO1609]
gi|206594339|emb|CAQ61266.1| gtp pyrophosphokinase (atp:gtp 3'-pyrophosphotransferase) protein
[Ralstonia solanacearum IPO1609]
Length = 746
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 269 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 328
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 329 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 388
+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 389 AEHGLAAHWLYKETGNK 405
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 26 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQL--LRRHRRINV---NQGTLGHEEANDLR 80
A ++ +IE FG EVA+LV V +L I + + NV N+ + LR
Sbjct: 80 AADNEKAIEPAFGAEVARLVHDVRQLLRIGAIAGMVSPAETNVTRKNEAEARRAQVEALR 139
Query: 81 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 140
MLL D RVVLI+LA RL ++R + +A+ETL I+ LA+RLG+W LK
Sbjct: 140 KMLLAFAQDIRVVLIRLASRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKW 199
Query: 141 ELEDLCFAVLQPQIFRKM 158
ELEDL F ++++
Sbjct: 200 ELEDLGFRFEDSDTYKRI 217
>gi|163856045|ref|YP_001630343.1| GTP pyrophosphokinase [Bordetella petrii DSM 12804]
gi|163259773|emb|CAP42074.1| GTP pyrophosphokinase [Bordetella petrii]
Length = 745
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 94/144 (65%), Gaps = 9/144 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI++KMR K + ++YD RALRV+V D ++ CY+ L
Sbjct: 251 GIHAEVSGRPKHIYSIWNKMRLKGLEFSQMYDLRALRVIVDD---------VRDCYTALG 301
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT+ MH++AE+G+AAH
Sbjct: 302 MVHDMWTPLPDEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTRGMHQFAEYGMAAH 361
Query: 397 WLYKETGNKLQSISSMDESDIEAS 420
W YKE G K +++ E D + S
Sbjct: 362 WRYKEAGAKGGQVAASSEYDRQLS 385
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
I EFG EVA+LV G L + + R + G ++ R MLL M D R+
Sbjct: 100 IAAEFGAEVARLVQGARALLRLGLVARHASDSEADSG----DQKEMQRKMLLAMAADLRI 155
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL++LA RL +R A A+ETL ++ LA+RLG+W +K E+EDL F L+P
Sbjct: 156 VLMRLASRLQTLRWHAESKAPCTPAFARETLDLYAPLANRLGIWQVKWEMEDLAFRFLEP 215
Query: 153 QIFRKM 158
++++
Sbjct: 216 DRYKQI 221
>gi|421897088|ref|ZP_16327461.1| probable gtp 3'-pyrophosphotransferase protein, partial [Ralstonia
solanacearum MolK2]
gi|206588253|emb|CAQ18811.1| probable gtp 3'-pyrophosphotransferase protein, partial [Ralstonia
solanacearum MolK2]
Length = 729
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 269 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 328
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 222 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 272
Query: 329 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 388
+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH +
Sbjct: 273 KDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMHHF 332
Query: 389 AEHGLAAHWLYKETGNK 405
AE+G+AAHW YKE G+K
Sbjct: 333 AEYGVAAHWRYKEAGSK 349
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 26 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQL--LRRHRRINV---NQGTLGHEEANDLR 80
A ++ +IE FG EVA+LV V +L I + + NV N+ + LR
Sbjct: 63 AADNEKAIEPAFGAEVARLVHDVRQLLRIGAIAGMVSPAETNVTRKNEAEARRAQVEALR 122
Query: 81 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 140
MLL D RVVLI+LA RL ++R + +A+ETL I+ LA+RLG+W LK
Sbjct: 123 KMLLAFAQDIRVVLIRLASRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKW 182
Query: 141 ELEDLCFAVLQPQIFRKM 158
ELEDL F ++++
Sbjct: 183 ELEDLGFRFEDSDTYKRI 200
>gi|395762127|ref|ZP_10442796.1| GTP pyrophosphokinase [Janthinobacterium lividum PAMC 25724]
Length = 750
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 88/138 (63%), Gaps = 9/138 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K +YSI++KMR K++ +YD RA RV+V D ++ CY++L
Sbjct: 250 GIEAEVFGRPKHIYSIWNKMRGKELDFTALYDVRAFRVIVAD---------VKTCYTVLG 300
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W PI EFDDYI PK +GYQSLHT V DG LEVQIRT +MH +AE+G+AAH
Sbjct: 301 VVHNVWTPIPKEFDDYISRPKANGYQSLHTVVTAEDGRPLEVQIRTNEMHSFAEYGVAAH 360
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE G + DE
Sbjct: 361 WRYKEEGGSNFAGQKYDE 378
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 6/153 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T +AG++ ++ ++ IE FG +V L GV +L + L + +G
Sbjct: 68 ETRIAGLMFELTMLDPDTAADIEPRFGKQVCDLATGVRQLIRLRALTQAQHGSAAGRGKN 127
Query: 72 GHEEA----NDLRVMLLGMVDDPRVVLIKLADRLHNMRTI--YALPPAKARAVAQETLLI 125
++A LR MLL M D RVVL++LA + +R L R +ETL +
Sbjct: 128 AAQQAVAQVETLRKMLLAMASDMRVVLVRLAACVTTLRYFAEIKLFNDMTREYGKETLDL 187
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
+ LA+RLG+W LK ELEDL F ++P+ ++++
Sbjct: 188 YAPLANRLGIWQLKWELEDLSFRFIEPEAYKRI 220
>gi|393776779|ref|ZP_10365073.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Ralstonia sp. PBA]
gi|392716136|gb|EIZ03716.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Ralstonia sp. PBA]
Length = 735
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 89/129 (68%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ ++ R K +YSI+ KMR K++ +YD RA RV+V D ++ CY++L
Sbjct: 236 GVRAEVTGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------VKDCYTVLG 286
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH +W PI EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +AE+G+AAH
Sbjct: 287 IVHHIWHPIPKEFDDYISRPKANGYRSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAH 346
Query: 397 WLYKETGNK 405
W YKE G+K
Sbjct: 347 WRYKEAGSK 355
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 2/145 (1%)
Query: 16 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI--NVNQGTLGH 73
AG L V + IE +FG+EVA+LV + +L I + + + N+
Sbjct: 62 AGCLFAVAAAVPGAETEIETQFGEEVARLVRDIRQLLRIGAIATHADAVGSSKNEAEARQ 121
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+ LR MLL D RVVL++LA RL +R + +A+ETL ++ LA+RL
Sbjct: 122 HQVESLRKMLLAFAQDIRVVLVRLASRLATLRWLAQNKREALPGMARETLDVYAPLANRL 181
Query: 134 GLWALKAELEDLCFAVLQPQIFRKM 158
G+W +K ELEDL F +P+I++++
Sbjct: 182 GIWQIKWELEDLAFRFAEPEIYKRI 206
>gi|326316451|ref|YP_004234123.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323373287|gb|ADX45556.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 741
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 90/140 (64%), Gaps = 10/140 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ T+ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 242 ISATVQGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVVV---------PTVKDCYAALSW 292
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + PID EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 293 VHSHFKPIDAEFDDYIAKPKPNGYQSLHTVVRDEAGKAIEIQIRTQAMHDHAEHGVAAHW 352
Query: 398 LYKETGNK-LQSISSMDESD 416
YKE G K +S+ E D
Sbjct: 353 AYKEAGAKGYVGVSASSEYD 372
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 17/143 (11%)
Query: 26 ACESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH------EE 75
AC L EE FG A L ++L + R + GH
Sbjct: 76 ACSHLNKPEEVIAKAFGQNFATLAVETTKLMRVQHHAREAQ-------LAGHAVDDPATH 128
Query: 76 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 135
++R MLL D RVV+++LA RL +R A + ++A+E L ++ SLA+RLG+
Sbjct: 129 TENVRKMLLAFSRDLRVVMLRLASRLQTLRFYAASKRPVSPSIAREALQVFASLANRLGI 188
Query: 136 WALKAELEDLCFAVLQPQIFRKM 158
W +K ELEDL F L+P ++++
Sbjct: 189 WQMKWELEDLSFRFLEPDTYKQI 211
>gi|73540969|ref|YP_295489.1| RelA/SpoT protein [Ralstonia eutropha JMP134]
gi|72118382|gb|AAZ60645.1| RelA/SpoT protein [Ralstonia eutropha JMP134]
Length = 741
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 87/129 (67%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L
Sbjct: 239 GIRAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLG 289
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAH
Sbjct: 290 IVHHIWQPIPREFDDYISRPKSNGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAH 349
Query: 397 WLYKETGNK 405
W YKE G+K
Sbjct: 350 WRYKEAGSK 358
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRH--RRINVNQGTLGHEEANDLRVMLLGMVDDP 90
IE FG++V ++V GV +L I + H + + N HE+ LR MLL D
Sbjct: 82 IEARFGEDVCRMVKGVRQLLRIGAIAGGHDAQEASRNVAQARHEQVEALRKMLLAFAQDI 141
Query: 91 RVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 150
RVVL++LA RL ++R + +A+ETL I+ LA+RLG+W +K ELEDL F
Sbjct: 142 RVVLVRLASRLQSLRWLAQNKREPLPGIARETLDIYAPLANRLGIWQMKWELEDLAFRFE 201
Query: 151 QPQIFRKM 158
QP ++++
Sbjct: 202 QPDTYKRI 209
>gi|374370980|ref|ZP_09628969.1| RelA/SpoT protein [Cupriavidus basilensis OR16]
gi|373097537|gb|EHP38669.1| RelA/SpoT protein [Cupriavidus basilensis OR16]
Length = 717
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 86/124 (69%), Gaps = 9/124 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L IVH +
Sbjct: 222 VSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLGIVHHI 272
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI EFDDYI PK +GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE
Sbjct: 273 WQPIPREFDDYISRPKSNGYKSLHTVVIGDDGRAFEVQIRTQEMHHFAEYGVAAHWRYKE 332
Query: 402 TGNK 405
G+K
Sbjct: 333 AGSK 336
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 62/129 (48%), Gaps = 26/129 (20%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHR---RINVNQGTLGHEEANDLRVMLLGMVDD 89
IE FG+EVA LV GV +L I + H ++ E+ LR MLL D
Sbjct: 82 IEPLFGEEVAGLVKGVRQLLRIGAIAVGHSGAPETTKDEIAARQEQVEALRKMLLAFAQD 141
Query: 90 PRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 149
RVVL++LA RL +R LA+RLG+W +K ELEDL F
Sbjct: 142 IRVVLVRLASRLQTLR-----------------------LANRLGIWQMKWELEDLAFRF 178
Query: 150 LQPQIFRKM 158
QP+ ++++
Sbjct: 179 EQPETYKRI 187
>gi|452124129|ref|ZP_21936713.1| GTP pyrophosphokinase [Bordetella holmesii F627]
gi|452127514|ref|ZP_21940095.1| GTP pyrophosphokinase [Bordetella holmesii H558]
gi|451923359|gb|EMD73500.1| GTP pyrophosphokinase [Bordetella holmesii F627]
gi|451926794|gb|EMD76924.1| GTP pyrophosphokinase [Bordetella holmesii H558]
Length = 748
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 94/140 (67%), Gaps = 9/140 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GIRGEVSGRPKHIYSIWNKMRLKRLDFSQMYDLRALRIIVDD---------VRDCYAALA 301
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW+P+ EFDDYI PKP+GY+SLHT V G A EVQIRT +MH++AE+G+AAH
Sbjct: 302 LVHELWVPLQDEFDDYISRPKPNGYRSLHTVVADQQGRAFEVQIRTHEMHQFAEYGMAAH 361
Query: 397 WLYKETGNKLQSISSMDESD 416
W YKE G++ +++ + D
Sbjct: 362 WRYKEAGSRGGQVTASSDYD 381
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 36 EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLI 95
EFG EVA+LV G L + + R+ + G+ + R MLL M D R+VL+
Sbjct: 103 EFGAEVARLVQGARALLRLGIVARQASDSAADTGSQKEMQ----RKMLLAMAADLRIVLM 158
Query: 96 KLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 155
+LA RL ++R + + AQETL ++ LA+RLG+W LK ELEDL F L P +
Sbjct: 159 RLASRLQSLRWHAETKTPCSASFAQETLDLYTPLANRLGIWQLKWELEDLSFRFLDPVRY 218
Query: 156 RKM 158
+++
Sbjct: 219 KEI 221
>gi|300703877|ref|YP_003745479.1| GTP diphosphokinase [Ralstonia solanacearum CFBP2957]
gi|299071540|emb|CBJ42864.1| GTP diphosphokinase [Ralstonia solanacearum CFBP2957]
Length = 746
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 87/129 (67%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L
Sbjct: 247 GIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLG 297
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH +AE+G+AAH
Sbjct: 298 FVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAH 357
Query: 397 WLYKETGNK 405
W YKE G+K
Sbjct: 358 WRYKEAGSK 366
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 26 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQL--LRRHRRINV---NQGTLGHEEANDLR 80
A ++ +IE FG EVA+LV V +L I + + NV N+ + LR
Sbjct: 80 AADNEKAIEPAFGAEVARLVHDVRQLLRIGAIAGMVNPAETNVTRKNEAEARRAQVEALR 139
Query: 81 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 140
MLL D RVVLI+LA RL ++R + +A+ETL I+ LA+RLG+W LK
Sbjct: 140 KMLLAFAQDIRVVLIRLASRLQSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKW 199
Query: 141 ELEDLCFAVLQPQIFRKM 158
ELEDL F ++++
Sbjct: 200 ELEDLGFRFEDSDTYKRI 217
>gi|399545685|ref|YP_006558993.1| GTP pyrophosphokinase [Marinobacter sp. BSs20148]
gi|399161017|gb|AFP31580.1| GTP pyrophosphokinase [Marinobacter sp. BSs20148]
Length = 743
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 113/181 (62%), Gaps = 19/181 (10%)
Query: 229 KFLHDLAKSSEAQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSRLK 287
++LH+ A +K AK++ + + S + ALE EL + G++ +S R+K
Sbjct: 216 RYLHETA----YKKIAKLLDEKRLNRESYIKRVVAALESELGSA-----GIKGDVSGRVK 266
Query: 288 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 347
+YSI+ KMRRK + +VYD RA+R++V P ++ CY++L +VH LW I
Sbjct: 267 HIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAVLGVVHGLWRHIPN 317
Query: 348 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQ 407
EFDDYI N K +GYQSLHTAV GP+G +EVQIRT+ MHE AE G+ AHWLYK T K +
Sbjct: 318 EFDDYIANVKENGYQSLHTAVIGPEGKVMEVQIRTRDMHEEAELGVCAHWLYKGTDTKNK 377
Query: 408 S 408
S
Sbjct: 378 S 378
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 97/176 (55%), Gaps = 13/176 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
++ A +L+ V + +L ++ +EFGDEVA L+ GV +++ I+ + H + N LG
Sbjct: 84 SLTAAVLYRAVREERVTLEAVRKEFGDEVAGLIKGVLQMAAISSI---HHPLKGN--VLG 138
Query: 73 HEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
E +++R ML+ MVDD RV LIKLA+R +R + P K VA+E I+ LA
Sbjct: 139 QSEGQLDNVRKMLVTMVDDVRVALIKLAERTCAIRGVKDALPEKRMRVAREVFEIYAPLA 198
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIVSS 184
RLG+ +K ELEDL F L ++K +A + + NR Y +R+ + S
Sbjct: 199 HRLGIGYIKWELEDLSFRYLHETAYKK----IAKLLDEKRLNRESYIKRVVAALES 250
>gi|269792823|ref|YP_003317727.1| (p)ppGpp synthetase I SpoT/RelA [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100458|gb|ACZ19445.1| (p)ppGpp synthetase I, SpoT/RelA [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 756
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 88/133 (66%), Gaps = 9/133 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E LS R K YSI+ KMRRK++ + ++YD ALRV+VG + CY +L
Sbjct: 264 GIEAYLSGRPKHFYSIYEKMRRKNLSLDQLYDLLALRVIVG---------TVAECYQVLG 314
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 315 LVHTIWKPIPGQFDDYIANPKSNMYQSLHTTVLGPSGEPLEVQIRTWEMHWLAEYGVAAH 374
Query: 397 WLYKETGNKLQSI 409
W YKE ++ I
Sbjct: 375 WHYKEGKRRVDQI 387
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 89/149 (59%), Gaps = 12/149 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V+T+ A +LHDV++D + FG+ V +V GV++L + +
Sbjct: 99 VETLSAALLHDVLEDTEVGKEEMLSRFGEGVLTMVDGVTKLG------------KLAFKS 146
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +A +LR M L M D RVVLIKLADRLHNMRT+ A K +A+ETL I+ LA
Sbjct: 147 MEDYQAENLRKMFLVMAKDIRVVLIKLADRLHNMRTLQAHRRDKQITIAKETLEIYAPLA 206
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMR 159
RLG++ +K ELEDLCF +L+P I+ ++R
Sbjct: 207 HRLGIYNVKRELEDLCFKILEPDIYYEIR 235
>gi|222111668|ref|YP_002553932.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax ebreus TPSY]
gi|221731112|gb|ACM33932.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax ebreus TPSY]
Length = 747
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 91/140 (65%), Gaps = 10/140 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ ++ R K +YSI KMR K + +V+D RALRVVV P+++ CY+ L
Sbjct: 259 ISASVQGRPKHIYSIVKKMRGKSLNFDQVFDIRALRVVV---------PSVKDCYAALSW 309
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + PI+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 310 VHSQFKPIEAEFDDYIARPKPNGYQSLHTVVRDEAGKAIEIQIRTQAMHDHAEHGVAAHW 369
Query: 398 LYKETGNK-LQSISSMDESD 416
YKE G K +S+ E D
Sbjct: 370 AYKEAGTKGYAGVSASSEYD 389
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 26 ACESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 81
AC L EE FG A L ++L + QL R ++ Q + ++R
Sbjct: 93 ACSHLNKPEEVITKAFGSNFAALALETTKLMRV-QLQAREAQVTGQQVDDAATQTENVRK 151
Query: 82 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 141
MLL D RVV+++LA RL +R A + A+A+E L ++ LA+RLG+W +K E
Sbjct: 152 MLLAFSRDLRVVMLRLASRLQTLRFYAAAKRPVSPAIAREALQVFAPLANRLGIWQMKWE 211
Query: 142 LEDLCFAVLQPQIFRKM 158
LEDL F L+P+ ++++
Sbjct: 212 LEDLAFRFLEPETYKEV 228
>gi|121595454|ref|YP_987350.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax sp. JS42]
gi|120607534|gb|ABM43274.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax sp. JS42]
Length = 747
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 91/140 (65%), Gaps = 10/140 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ ++ R K +YSI KMR K + +V+D RALRVVV P+++ CY+ L
Sbjct: 259 ISASVQGRPKHIYSIVKKMRGKSLNFDQVFDIRALRVVV---------PSVKDCYAALSW 309
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + PI+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 310 VHSQFKPIEAEFDDYIARPKPNGYQSLHTVVRDEAGKAIEIQIRTQAMHDHAEHGVAAHW 369
Query: 398 LYKETGNK-LQSISSMDESD 416
YKE G K +S+ E D
Sbjct: 370 AYKEAGTKGYAGVSASSEYD 389
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 26 ACESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 81
AC L EE FG A L ++L + QL R ++ Q + ++R
Sbjct: 93 ACSHLNKPEEVITKAFGSNFAALALETTKLMRV-QLQAREAQVMGQQVDDAATQTENVRK 151
Query: 82 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 141
MLL D RVV+++LA RL +R A + A+A+E L ++ LA+RLG+W +K E
Sbjct: 152 MLLAFSRDLRVVMLRLASRLQTLRFYAAAKRPVSPAIAREALQVFAPLANRLGIWQMKWE 211
Query: 142 LEDLCFAVLQPQIFRKM 158
LEDL F L+P+ ++++
Sbjct: 212 LEDLAFRFLEPETYKEV 228
>gi|113867356|ref|YP_725845.1| GTP pyrophosphokinase [Ralstonia eutropha H16]
gi|113526132|emb|CAJ92477.1| GTP pyrophosphokinase [Ralstonia eutropha H16]
Length = 742
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/139 (50%), Positives = 90/139 (64%), Gaps = 9/139 (6%)
Query: 267 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 326
E L S G+ +S R K +YSI+ KMR K++ +YD RA RV+V D
Sbjct: 232 ERLQSELATAGIRAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD-------- 283
Query: 327 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 386
I+ CY++L IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH
Sbjct: 284 -IKDCYTVLGIVHHIWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMH 342
Query: 387 EYAEHGLAAHWLYKETGNK 405
+AE+G+AAHW YKE G++
Sbjct: 343 HFAEYGVAAHWRYKEAGSR 361
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-----NVNQGTLGHEEANDLRVMLLGMV 87
I FGDEVA+LV GV +L I + + N+ HE+ LR MLL
Sbjct: 82 IAPRFGDEVARLVDGVRQLLRIGAIAGSRPEAEPAAPSKNEAQARHEQVEALRKMLLAFA 141
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVL++LA RL +R + A VA+ETL I+ LA+RLG+W +K ELEDL F
Sbjct: 142 QDIRVVLVRLASRLQTLRWLAETKQAPQPGVARETLDIYAPLANRLGIWQMKWELEDLAF 201
Query: 148 AVLQPQIFRKM 158
QP ++++
Sbjct: 202 RFEQPDTYKRI 212
>gi|71908440|ref|YP_286027.1| RelA/SpoT protein [Dechloromonas aromatica RCB]
gi|71848061|gb|AAZ47557.1| RelA/SpoT protein [Dechloromonas aromatica RCB]
Length = 740
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/140 (52%), Positives = 97/140 (69%), Gaps = 12/140 (8%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
+ G EV R K +YSI++KMR+KDV +VYD RALR++V D ++ CY+
Sbjct: 255 VKGAEVY--GRPKHIYSIWNKMRKKDVEFSEVYDVRALRIIVDD---------LKDCYTA 303
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L IVH LW+PI EFDDYI NPK + Y+SLHTAV+ PDG +LE+QIRT +MH++AE G+A
Sbjct: 304 LGIVHNLWLPIPREFDDYISNPKGNYYRSLHTAVRCPDGRSLEIQIRTAEMHKHAELGVA 363
Query: 395 AHWLYKETGNKLQSISSMDE 414
AHW YKE G+K + DE
Sbjct: 364 AHWRYKE-GSKRTTEDDYDE 382
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 91/166 (54%), Gaps = 6/166 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V++ +A +L + + SIE FG A LV G+SRL+ + + + IN+ G
Sbjct: 73 VESRIAAVLFAIPSHDEHGITSIESRFGKPAAHLVHGISRLNRLRPITKGFVAINIEAGE 132
Query: 71 LGHEEAND----LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARA-VAQETLLI 125
+ E LR MLL MV+D RVVL++LA R +R YA P + R VA+ETL +
Sbjct: 133 INPAEMKAQVEVLRKMLLAMVEDIRVVLLRLASRTQTLR-FYAAHPDELRVQVARETLEL 191
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
+ LA+RLG+W LK ELEDL F + P ++K+ L S R +
Sbjct: 192 YSPLANRLGVWELKWELEDLSFRFIHPDTYKKIAKMLDEKRSEREK 237
>gi|339325467|ref|YP_004685160.1| GTP pyrophosphokinase [Cupriavidus necator N-1]
gi|338165624|gb|AEI76679.1| GTP pyrophosphokinase RelA [Cupriavidus necator N-1]
Length = 742
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 110/180 (61%), Gaps = 19/180 (10%)
Query: 231 LHDLAKSSEA----QKKAKVVQDAGIALTSLVACE-EALEKELLISTSYIPGMEVTLSSR 285
L DLA E ++ AK++ + I +A E L+ EL +T+ IP +S R
Sbjct: 196 LEDLAFRFEQPDTYKRIAKLLDEKRIEREGYIASAIERLQSEL--ATAGIPA---EVSGR 250
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L IVH +W PI
Sbjct: 251 PKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLGIVHHIWQPI 301
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW YKE G++
Sbjct: 302 PREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAHWRYKEAGSR 361
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-----NVNQGTLGHEEANDLRVMLLGMV 87
I FGDEVA+LV GV +L I + + N+ HE+ LR MLL
Sbjct: 82 IAPRFGDEVARLVDGVRQLLRIGAIAGSRPEAEPAAPSKNEAQARHEQVEALRKMLLAFA 141
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D RVVL++LA RL +R + A VA+ETL I+ LA+RLG+W +K ELEDL F
Sbjct: 142 QDIRVVLVRLASRLQTLRWMAETKQAPQPGVARETLDIYAPLANRLGIWQMKWELEDLAF 201
Query: 148 AVLQPQIFRKM 158
QP ++++
Sbjct: 202 RFEQPDTYKRI 212
>gi|210616270|ref|ZP_03291020.1| hypothetical protein CLONEX_03241 [Clostridium nexile DSM 1787]
gi|210149868|gb|EEA80877.1| hypothetical protein CLONEX_03241 [Clostridium nexile DSM 1787]
Length = 781
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 124/437 (28%), Positives = 194/437 (44%), Gaps = 121/437 (27%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+VAGILHDVV+D + I E FG EVA LV GV++L QL ++ V
Sbjct: 109 ETIVAGILHDVVEDTVMTEQEITEIFGSEVALLVDGVTKLG---QLSYSADKLEV----- 160
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A +LR M L M A++ +I LA
Sbjct: 161 ---QAENLRKMFLAM--------------------------------AKDIRVILIKLAD 185
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP-RNRVGYSRRITTIVSSPPLDER 190
RL + L F + QI K R + +++P R+G SR +
Sbjct: 186 RL------HNMRTLQFMRPEKQI-EKARETM-DIYAPIAQRLGISRI------------K 225
Query: 191 TASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKS-SEAQKKAKVVQD 249
T DD S V DL++ I + + +R +F+ + + SE K AK+
Sbjct: 226 TELDDLSLKYSQPEVFY--DLVQ-----QINARKTEREEFVQQIVEEVSEHMKNAKI--- 275
Query: 250 AGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 309
+ + R+K +SI+ KM +D + ++YD
Sbjct: 276 -----------------------------KAEVKGRVKHFFSIYKKMVNQDKTVDQIYDL 306
Query: 310 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 369
A+R++V +++ CY+ L ++H ++ PI G F DYI PKP+ YQSLHT +
Sbjct: 307 FAVRIIV---------ESVKDCYAALGVIHEMYTPIPGRFKDYIAMPKPNMYQSLHTTLM 357
Query: 370 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSL---SKD 426
G E+QIRT++MH+ AE+G+AAHW YKE+ + +S+++ +E + + +D
Sbjct: 358 SSVGQPFEIQIRTEEMHKTAEYGIAAHWKYKESNDGKKSVAAQEEEKLSWLRQILEWQQD 417
Query: 427 TDDHNPL-----DTDLF 438
TD+ L D DLF
Sbjct: 418 TDNREFLSLLKGDLDLF 434
>gi|260892286|ref|YP_003238383.1| (p)ppGpp synthetase I SpoT/RelA [Ammonifex degensii KC4]
gi|260864427|gb|ACX51533.1| (p)ppGpp synthetase I, SpoT/RelA [Ammonifex degensii KC4]
Length = 710
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 109/173 (63%), Gaps = 14/173 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+VAG+LHDVV+D +L IE EFG E+A LV GV++LS + +
Sbjct: 64 ETIVAGLLHDVVEDTGTTLEEIEHEFGAEIAALVDGVTKLS------------RLQFRSQ 111
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++A +LR M + M D RVVLIKLADRLHN+RT+ LPP K RA+A+ETL I+ LA
Sbjct: 112 EEQQAENLRKMFVAMAKDVRVVLIKLADRLHNLRTLQYLPPEKQRAIAKETLEIFAPLAH 171
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 184
RLG++ LK ELEDL F L+P+ +R++ A +A + R Y+R + I+
Sbjct: 172 RLGIYRLKWELEDLAFRYLEPERYRELAAKVAKTRAAREE--YTRELIAILQK 222
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 77/125 (61%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ L R K+LYSI+ KM R ++YD +R +V ++ CY++L
Sbjct: 228 GIKAELMGRPKNLYSIYQKMLRDGKEYSEIYDRTGIRALV---------ETVRDCYAVLG 278
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP G +EVQIRT +MH AE+G+AAH
Sbjct: 279 VVHTLWKPVPGRFKDYIAMPKENMYQSLHTTVIGPQGEPVEVQIRTYEMHRTAEYGIAAH 338
Query: 397 WLYKE 401
W YKE
Sbjct: 339 WRYKE 343
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 15/109 (13%)
Query: 593 SMEASINNKVRLLRTMLRWEEQLR-SEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 651
+ + + K LR +L W +++R + + + K+ V +VV V P G+
Sbjct: 346 TRDKQLEAKFAWLRELLEWVQEMRDAREFMERLKID----------VFSDVVFVFTPKGD 395
Query: 652 IMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
++ L +G+ D A + VG K VNG+LV + +LK GDIVE+
Sbjct: 396 VVELPAGAVPLDFAYRIHTEVGHRYKGAKVNGRLVPLDYQLKTGDIVEI 444
>gi|194289382|ref|YP_002005289.1| (p)ppgpp synthetase i (gtp pyrophosphokinase) [Cupriavidus
taiwanensis LMG 19424]
gi|193223217|emb|CAQ69222.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Cupriavidus
taiwanensis LMG 19424]
Length = 742
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 87/129 (67%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L
Sbjct: 242 GIRAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLG 292
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAH
Sbjct: 293 IVHHIWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAH 352
Query: 397 WLYKETGNK 405
W YKE G++
Sbjct: 353 WRYKEAGSR 361
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 76/136 (55%), Gaps = 5/136 (3%)
Query: 28 ESLGSIEEEFGDEVAKLVAGVSRLSYI-----NQLLRRHRRINVNQGTLGHEEANDLRVM 82
E+ IE FG+EVA+LV GV +L I N+ + N+ HE+ LR M
Sbjct: 77 ETEAEIEPRFGEEVARLVNGVRQLLRIGAIAGNRPDAESAAPSKNEAQARHEQVEALRKM 136
Query: 83 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 142
LL D RVVL++LA RL +R + + VA+ETL I+ LA+RLG+W +K EL
Sbjct: 137 LLAFAQDIRVVLVRLASRLQTLRWLAETKQSPLPGVARETLDIYAPLANRLGIWQMKWEL 196
Query: 143 EDLCFAVLQPQIFRKM 158
EDL F QP ++++
Sbjct: 197 EDLAFRFEQPDTYKRI 212
>gi|340786805|ref|YP_004752270.1| GTP pyrophosphokinase [Collimonas fungivorans Ter331]
gi|340552072|gb|AEK61447.1| GTP pyrophosphokinase [Collimonas fungivorans Ter331]
Length = 757
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI++KM+ K++ ++YD RA RV+V D ++ CY++L I
Sbjct: 251 IKAEVSGRPKHIYSIWNKMQGKELDFSELYDVRAFRVIVDD---------VKTCYTVLGI 301
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH +W+PI EFDDYI PK +GYQSLHT V D ALEVQIRT +MH +AE+G+AAHW
Sbjct: 302 VHNIWVPIPKEFDDYISRPKQNGYQSLHTVVLADDDRALEVQIRTNEMHHFAEYGVAAHW 361
Query: 398 LYKETGNKLQSISSMDE 414
YKE G S DE
Sbjct: 362 RYKEAGGSNFSAQKYDE 378
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 21/161 (13%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH--------- 61
V+T +AG+L ++ +IE+ FG E++ LV G I QL+R H
Sbjct: 68 VETRIAGLLFELPLLDASYADTIEQRFGKEISDLVGG------IRQLMRLHGFTFGLPQE 121
Query: 62 --RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTI--YALPPAKARA 117
R N Q E LR MLL M D RVVL++LA R+ +R + + +
Sbjct: 122 VMRGKNAAQQAASQVET--LRKMLLAMATDMRVVLVRLASRVTALRYFSEHKIENERTSQ 179
Query: 118 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+ETL ++ LA+RLG+W LK ELEDL F + P ++++
Sbjct: 180 YARETLDLYAPLANRLGIWQLKWELEDLSFRFIDPVTYKRI 220
>gi|372268561|ref|ZP_09504609.1| GTP pyrophosphokinase [Alteromonas sp. S89]
Length = 723
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 98/159 (61%), Gaps = 15/159 (9%)
Query: 284 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 343
R K +YSI+ KMRRK++G +VYD RA+R++V P ++ CY++L IVH LW
Sbjct: 239 GRAKHIYSIWRKMRRKNIGFSQVYDIRAVRILV---------PTVRDCYAVLGIVHNLWR 289
Query: 344 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 403
I EFDDYI +PK +GY+SLHTAV GPD LEVQIRT MHE AE+G+ AHW YK T
Sbjct: 290 NIPNEFDDYIASPKENGYRSLHTAVIGPDRKVLEVQIRTFAMHEEAEYGVCAHWRYKGTD 349
Query: 404 NKLQSISSMDESDIEASSSLSKDTDDH-----NPLDTDL 437
K + D + + S L + D H NPL DL
Sbjct: 350 KKSGQLEGQDGYE-QKISWLRQVLDWHEEVGGNPLQDDL 387
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 83/150 (55%), Gaps = 8/150 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV---NQ 68
+ + A +L+ V + L ++E E G+ VAKL+ GV R++ I R R + NQ
Sbjct: 58 EALCAAMLYRAVREKRLPLKTVEAEMGETVAKLIRGVLRMAVI-----RSRSADTGEENQ 112
Query: 69 GTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 128
E + ++R ML+ +VDD RV LIKLA+R +R AK R VA+E ++
Sbjct: 113 SGAVEEHSENIRRMLVALVDDVRVALIKLAERTCAIRAAKNTDEAKRRRVAREVADVYAP 172
Query: 129 LASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA RLG+ +K ELEDL F L+P + ++
Sbjct: 173 LAHRLGIGHIKWELEDLAFRYLEPDDYMQI 202
>gi|152995282|ref|YP_001340117.1| (p)ppGpp synthetase I SpoT/RelA [Marinomonas sp. MWYL1]
gi|150836206|gb|ABR70182.1| (p)ppGpp synthetase I, SpoT/RelA [Marinomonas sp. MWYL1]
Length = 749
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 91/142 (64%), Gaps = 11/142 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+ L R K +YSI+ KM+RK++G +VYD RA+R++V + CY +L
Sbjct: 256 NIHADLMGRAKHIYSIWRKMKRKNIGFDEVYDVRAVRILVDEP---------MECYGVLG 306
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW PI EFDDYI NPK +GYQSLHTAV GP G ALE+QIRT KMHE AE G+ AH
Sbjct: 307 VVHNLWRPIPQEFDDYISNPKSNGYQSLHTAVIGPQGRALEIQIRTHKMHEDAELGVCAH 366
Query: 397 WLYKETGNKLQSISSMDESDIE 418
W YK G L S SS E ++
Sbjct: 367 WKYK--GTDLSSNSSSYEEKLQ 386
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 14/188 (7%)
Query: 6 SGKRA-VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI 64
SG RA D++VA L+ VV + + + E FG +V+ +V GV ++ +++ L
Sbjct: 75 SGFRADQDSLVAAALYRVVREDQLPISRVTEMFGRKVSSIVEGVMKMGEVSKNLTADSAA 134
Query: 65 NVNQGTLGHEEAN--DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQET 122
V LG E LR ML+ ++DD RVVLIKLA+R ++ + AVA E
Sbjct: 135 EV----LGSSENQLESLRKMLVSIIDDVRVVLIKLAERACAIKEAKYQNEERRVAVALEV 190
Query: 123 LLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
++ LA RLG+ +K ELEDL F L P ++++ + W R+ + I ++
Sbjct: 191 QSVYAPLAHRLGIGHIKWELEDLSFRYLYPNDYKRI-----ATWLDEKRLDRQQYIDDVI 245
Query: 183 SSPPLDER 190
LD+R
Sbjct: 246 KL--LDDR 251
>gi|329907906|ref|ZP_08274732.1| GTP pyrophosphokinase [Oxalobacteraceae bacterium IMCC9480]
gi|327546888|gb|EGF31806.1| GTP pyrophosphokinase [Oxalobacteraceae bacterium IMCC9480]
Length = 757
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 89/138 (64%), Gaps = 9/138 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K +YSI++KMR K + ++D RA RV+V D ++ CY++L
Sbjct: 248 GIEAEVFGRPKHIYSIWNKMRGKAIDFSSLHDVRAFRVIVDD---------VKTCYAVLG 298
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH W P+ EFDDYI PKP+GYQSLHT V DG LE+QIRT++MH +AE+G+AAH
Sbjct: 299 IVHDNWAPVPEEFDDYIARPKPNGYQSLHTIVMAEDGRPLEIQIRTKEMHYFAEYGVAAH 358
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE+G + DE
Sbjct: 359 WRYKESGGSNFAAQKYDE 376
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 12 DTVVAGILHD--VVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRIN--VN 67
DT +A +L + V+D G IE FG EVA V V ++ +++L + + N
Sbjct: 68 DTRIAALLFELPVLDPLLA--GQIETRFGKEVAVFVEDVRQMMRLHELTFGQQEVGRGKN 125
Query: 68 QGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYA--LPPAKARAVAQETLLI 125
+ LR MLL M D RVVL++LA R +R + + A+ETL +
Sbjct: 126 AAQQAAAQLETLRKMLLAMASDMRVVLVRLASRTTTLRYFAERRIDTEQTYRYARETLDL 185
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
+ LA+RLG+W LK E+EDL F L+P ++++
Sbjct: 186 YAPLANRLGVWQLKWEMEDLSFRFLEPAAYKQI 218
>gi|217970681|ref|YP_002355915.1| (p)ppGpp synthetase I SpoT/RelA [Thauera sp. MZ1T]
gi|217508008|gb|ACK55019.1| (p)ppGpp synthetase I, SpoT/RelA [Thauera sp. MZ1T]
Length = 734
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 88/125 (70%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E ++ R K +YSI++KMR+K + +V+D RALRV+V P I+ CY++L
Sbjct: 246 GIEAEITGRAKHIYSIYNKMRKKRLDFSQVFDIRALRVLV---------PEIKDCYTVLG 296
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH++W PI EFDDYI PK + YQSLHTAV DG ALEVQIRT MH++AE G+AAH
Sbjct: 297 IVHQMWQPIAKEFDDYITKPKGNNYQSLHTAVLAGDGRALEVQIRTFDMHKHAELGVAAH 356
Query: 397 WLYKE 401
W YKE
Sbjct: 357 WRYKE 361
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
LI +S + +T VA +L ++ IE FG + LV G+ +L+ + L R
Sbjct: 63 LIAASLRLDAETRVAALLFAAWEELEAPAEEIEARFGPAITALVRGLHKLNGLRVLTRLT 122
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 121
+ + + LR MLL MV+D RVVL++LA R +R LP VA+E
Sbjct: 123 TSASAPEI---RAQTEVLRKMLLAMVEDIRVVLVRLASRTQTLRFYTDLPGEARVEVARE 179
Query: 122 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
+L I+ LA+RLG+W +K ELEDL F ++P ++++
Sbjct: 180 SLDIYAPLANRLGVWQIKWELEDLSFRFIEPDTYKRI 216
>gi|398803829|ref|ZP_10562843.1| (p)ppGpp synthetase, RelA/SpoT family [Polaromonas sp. CF318]
gi|398095693|gb|EJL86028.1| (p)ppGpp synthetase, RelA/SpoT family [Polaromonas sp. CF318]
Length = 753
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 88/141 (62%), Gaps = 10/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K +YSI KMR K + +V+D RALRV+ D G CY+ L
Sbjct: 252 GIAALVQGRPKHIYSIVKKMRGKSLDFEQVFDIRALRVIAADVKG---------CYAALG 302
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH + P+DGEFDDYI PK +GYQSLHT V+ G A+E+Q+RTQ MH++AEHG+AAH
Sbjct: 303 YVHSRFTPVDGEFDDYIAKPKSNGYQSLHTVVRDEAGRAVEIQVRTQAMHDHAEHGVAAH 362
Query: 397 WLYKETGNK-LQSISSMDESD 416
W YKE G K +S+ E D
Sbjct: 363 WAYKEAGTKGYGGVSASSEYD 383
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 26 ACESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN--DL 79
AC+ L +E FG A L ++L Q+ R+ R N L A ++
Sbjct: 87 ACQHLTKPQEVITKAFGANYAALAMETTKLV---QVQRQARSANAKAQLLDDPAAQTENV 143
Query: 80 RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALK 139
R MLL D RVV+++LA RL +R A +A E+L ++ LA+RLG+W +K
Sbjct: 144 RKMLLAFSRDLRVVMLRLASRLQTLRHYAATRQTAPLPLAYESLHVFAPLANRLGIWQIK 203
Query: 140 AELEDLCFAVLQPQIFRK 157
E+EDL F L+P+ +++
Sbjct: 204 WEMEDLAFRFLEPETYKQ 221
>gi|407939728|ref|YP_006855369.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax sp. KKS102]
gi|407897522|gb|AFU46731.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax sp. KKS102]
Length = 737
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 90/140 (64%), Gaps = 10/140 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ T++ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 249 ISATVAGRPKHIYSIVKKMRGKSLNFDQVFDIRALRVVV---------PTVKDCYAALSW 299
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + PI EFDDYI PKP+GYQSLHT V+ +G +E+QIRTQ MHE+AEHG+AAHW
Sbjct: 300 VHEQFKPIVEEFDDYIAKPKPNGYQSLHTIVRDDNGKPIEIQIRTQAMHEHAEHGVAAHW 359
Query: 398 LYKETGNK-LQSISSMDESD 416
YKE G K +S+ E D
Sbjct: 360 AYKEAGAKGYAGVSATGEYD 379
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 26 ACESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 81
AC L EE FG A L ++L + Q R ++ + ++R
Sbjct: 87 ACIHLNKPEEVIAKAFGANFAALAVETTKLMRVQQQARAAAPLDDPA-----VQTENVRK 141
Query: 82 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 141
MLL D RVV+++LA RL +R A + ++A+E+L ++ LA+RLG+W +K E
Sbjct: 142 MLLAFSRDLRVVMLRLASRLQTLRFHAASKRPVSPSLARESLQVFAPLANRLGIWQVKWE 201
Query: 142 LEDLCFAVLQPQIFRKM 158
LEDL F L+P ++++
Sbjct: 202 LEDLSFRFLEPDTYKEV 218
>gi|394988989|ref|ZP_10381824.1| hypothetical protein SCD_01404 [Sulfuricella denitrificans skB26]
gi|393792368|dbj|GAB71463.1| hypothetical protein SCD_01404 [Sulfuricella denitrificans skB26]
Length = 728
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 92/140 (65%), Gaps = 9/140 (6%)
Query: 266 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 325
+E L + G+ +S R K +YSI+ KM+RK V +VYD RA+RV+V D
Sbjct: 235 REQLRQELHKNGVVAEVSGRPKHIYSIYKKMKRKGVDFSEVYDVRAVRVLVND------- 287
Query: 326 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 385
++ CY+ L +VH LW PI GEFDDYI +PK + Y+SLHTAV GP+ ALEVQIRT M
Sbjct: 288 --LKDCYTALGVVHSLWQPIPGEFDDYIAHPKGNDYRSLHTAVVGPEEKALEVQIRTHDM 345
Query: 386 HEYAEHGLAAHWLYKETGNK 405
H +AE G+AAHW YKE G +
Sbjct: 346 HNHAELGVAAHWRYKEGGRQ 365
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 83/147 (56%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+++VA IL + E L + FG+ VA+LV GV+R+ I++ QG
Sbjct: 74 ESIVAAILQGAAEHDPEVLAKVAAIFGEGVARLVDGVARMGQISEYSAPAGGDKREQGA- 132
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
H E+ LR MLL MV+D RVVLIKLA+R MR + VA E I+ LA+
Sbjct: 133 -HIES--LRKMLLAMVEDIRVVLIKLAERTQAMRELSHADEDTRHRVAHEVQDIFAPLAN 189
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+W +K ELEDL F L+P +++K+
Sbjct: 190 RLGVWQVKWELEDLSFRYLEPDLYKKI 216
>gi|149923136|ref|ZP_01911550.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Plesiocystis pacifica SIR-1]
gi|149815974|gb|EDM75489.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Plesiocystis pacifica SIR-1]
Length = 741
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 107/180 (59%), Gaps = 11/180 (6%)
Query: 262 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 321
E LE+EL + ++ ++ R K +YSI KMRRK VG ++D A+RV+V D G
Sbjct: 233 ETLERELAEAE-----LDAEVNGRPKHIYSIVKKMRRKGVGFEDIFDVTAVRVIV-DGEG 286
Query: 322 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 381
+ + CY+ L +VH LW PI EFDDYI PK +GYQSLHTAV GP G LE+QIR
Sbjct: 287 KV---GKRDCYAALGLVHGLWNPIASEFDDYIARPKDNGYQSLHTAVVGPGGEPLEIQIR 343
Query: 382 TQKMHEYAEHGLAAHWLYKE--TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQ 439
T++MH +AE+G+AAHW YKE G K ++ ++ L + L TDLF+
Sbjct: 344 TRQMHLFAEYGVAAHWAYKEGKRGAKQMERFNLLRQLVDWQKQLVDPKELAEALKTDLFE 403
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 68/134 (50%), Gaps = 13/134 (9%)
Query: 40 EVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLAD 99
E L GV RL+ I L E A LR M + M D RVVLI L+D
Sbjct: 106 EAESLREGVERLAAIQW------------NALDEESAESLRRMFVAMAADVRVVLITLSD 153
Query: 100 RLHNMRTIYALPPAKARA-VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
RL +R + L A AR +A ET ++ LA+RLG+W LK ELEDL L P+ +R +
Sbjct: 154 RLEVIRDLRTLDDADARRRIATETREVFAPLANRLGIWQLKWELEDLAMRELDPEQYRDI 213
Query: 159 RADLASMWSPRNRV 172
L++ + R RV
Sbjct: 214 TTKLSTKRAERQRV 227
>gi|282857439|ref|ZP_06266672.1| GTP diphosphokinase [Pyramidobacter piscolens W5455]
gi|282584724|gb|EFB90059.1| GTP diphosphokinase [Pyramidobacter piscolens W5455]
Length = 816
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K YSIF KM RK + + ++YD ALRV+V D + CY++L
Sbjct: 325 GIEAHIKGRAKHFYSIFEKMNRKKLSVEQLYDLLALRVIVND---------VTTCYTVLG 375
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI G+FDDYI NPK + Y+SLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 376 IVHTLWKPIPGQFDDYIANPKNNMYRSLHTTVMGPQGEPLEVQIRTWEMHWLAEYGVAAH 435
Query: 397 WLYKE 401
W YKE
Sbjct: 436 WRYKE 440
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 83/147 (56%), Gaps = 12/147 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ AG+LHDV++D + ++ FG V LV GV++L + T
Sbjct: 162 TLQAGLLHDVLEDTPVTADEMKNRFGATVEMLVDGVTKLG------------KLPFKTFE 209
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A +LR M L M D RVVLIKLADR HNMR++ AL K + +A+ETL I+ LA R
Sbjct: 210 DYQAENLRKMFLVMAKDIRVVLIKLADRTHNMRSLGALRRDKQQRIAKETLEIYAPLAHR 269
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMR 159
LG++ +K LEDL F P ++ ++
Sbjct: 270 LGIYQVKRTLEDLAFKYYDPTMYYDIK 296
>gi|347819089|ref|ZP_08872523.1| (p)ppGpp synthetase I SpoT/RelA [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 737
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ ++ R K +YSI KMR K + +V+D RALRV+V P ++ CY+ L
Sbjct: 249 ISASVQGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVIV---------PTVKDCYAALSW 299
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH PI EFDDYI PKP+GYQSLHT V+ DG +E+QIRTQ MHE+AEHG+AAHW
Sbjct: 300 VHEQLQPIVEEFDDYIARPKPNGYQSLHTIVRDADGRPIEIQIRTQAMHEHAEHGVAAHW 359
Query: 398 LYKETGNK-LQSISSMDESD 416
YKE GNK +S+ E D
Sbjct: 360 AYKEAGNKGYAGVSAAGEYD 379
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 9/140 (6%)
Query: 23 VDDACESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 78
++ AC L EE FG A L ++L + Q R + ++ + +
Sbjct: 84 LEHACMHLNKPEEVIAKTFGAHFATLAMESTKLMRVQQQARAAQHVDDPA-----VQTEN 138
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
+R MLL D VVL+ LA RL +R A + ++A+E+L ++ LA+RLG+W L
Sbjct: 139 VRKMLLAFSRDLSVVLLHLASRLQTLRYHAANKRPVSPSMARESLQVFAPLANRLGIWQL 198
Query: 139 KAELEDLCFAVLQPQIFRKM 158
K ELEDL L+P ++K+
Sbjct: 199 KWELEDLALRFLEPDTYKKV 218
>gi|333909014|ref|YP_004482600.1| (p)ppGpp synthetase I SpoT/RelA [Marinomonas posidonica
IVIA-Po-181]
gi|333479020|gb|AEF55681.1| (p)ppGpp synthetase I, SpoT/RelA [Marinomonas posidonica
IVIA-Po-181]
Length = 751
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 72/137 (52%), Positives = 90/137 (65%), Gaps = 11/137 (8%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
L R K +YSI+ KM+RK++G +VYD RA+R++V + CY +L +VH L
Sbjct: 261 LMGRAKHIYSIWRKMKRKNIGFDEVYDVRAVRILVDEP---------MECYGVLGVVHNL 311
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI EFDDYI NPK +GYQSLHTAV GP G ALE+QIRT KMHE AE G+ AHW YK
Sbjct: 312 WRPIPQEFDDYISNPKSNGYQSLHTAVVGPQGRALEIQIRTHKMHEDAELGVCAHWKYK- 370
Query: 402 TGNKLQSISSMDESDIE 418
G L S S+ E ++
Sbjct: 371 -GTDLSSNSTSYEEKLQ 386
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 14/188 (7%)
Query: 6 SGKRA-VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI 64
SG RA D++VA L+ V + + + + FG +VA L+ GV R+ +++ L +
Sbjct: 75 SGFRADQDSLVAAALYRAVREDQLPISRVVDMFGRKVASLIEGVIRMGEVSKNLTADTAV 134
Query: 65 NVNQGTLGHEEAN--DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQET 122
V LG E LR ML+ ++DD RVVLIKLA+R ++ + AVA E
Sbjct: 135 EV----LGSNENQLESLRKMLVSIIDDVRVVLIKLAERACAIKEAKYQGEDRRVAVALEV 190
Query: 123 LLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
++ LA RLG+ +K ELEDL F L P ++++ + W R+ + I ++
Sbjct: 191 QSVYAPLAHRLGIGHIKWELEDLSFRYLYPTEYKRI-----AKWLDEKRLDRQQYIDDVI 245
Query: 183 SSPPLDER 190
LD+R
Sbjct: 246 GL--LDQR 251
>gi|254481349|ref|ZP_05094594.1| RelA/SpoT family protein [marine gamma proteobacterium HTCC2148]
gi|214038512|gb|EEB79174.1| RelA/SpoT family protein [marine gamma proteobacterium HTCC2148]
Length = 706
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 95/149 (63%), Gaps = 9/149 (6%)
Query: 266 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 325
K LL G+E + R K +YSI+ KM+RK +G +VYD RA+R++V
Sbjct: 208 KALLTDVLQQAGLEFEIEGRAKHIYSIWRKMQRKGIGFSQVYDIRAVRILV--------- 258
Query: 326 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 385
P I+ CY+ L +VH LW I EFDDYI +PK +GY+SLHTAV GP+G LEVQIRT++M
Sbjct: 259 PEIKDCYATLGLVHGLWRNIPNEFDDYIASPKENGYRSLHTAVIGPEGKILEVQIRTRQM 318
Query: 386 HEYAEHGLAAHWLYKETGNKLQSISSMDE 414
HE AE G+ AHW YK + + SS +E
Sbjct: 319 HEEAELGVCAHWRYKGSDSTPGMASSYEE 347
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 8/151 (5%)
Query: 10 AVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQG 69
D ++AG+L+ V + + +EE FG VA L+ GV R++ I L R +Q
Sbjct: 45 GTDCLLAGMLYRTVREKRIEIPEVEERFGAGVASLLRGVLRMAAIGDL-----RPQQDQP 99
Query: 70 TLG--HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWC 127
LG H + +++R ML+ +VDD RV LIKLA+R +R + + VA+E ++
Sbjct: 100 VLGQAHAQKDNVRKMLIALVDDVRVALIKLAERTCAIRAVKD-DEDRREPVAREVFDVYA 158
Query: 128 SLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA RLG+ LK ELEDL F + +RK+
Sbjct: 159 PLAHRLGIGHLKWELEDLSFRYIYADAYRKI 189
>gi|357419457|ref|YP_004932449.1| (p)ppGpp synthetase I SpoT/RelA [Thermovirga lienii DSM 17291]
gi|355396923|gb|AER66352.1| (p)ppGpp synthetase I, SpoT/RelA [Thermovirga lienii DSM 17291]
Length = 775
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 89/133 (66%), Gaps = 9/133 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ R K YSI+ KMRRK++ + +++D ALRV+V D + CY++L
Sbjct: 280 GIKAHITGRAKHFYSIYEKMRRKNLSLEELFDLLALRVIVDD---------VATCYTVLG 330
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W P+ G+FDDYI NPK + YQSLHTAV GP G LEVQIRT MH AE+G+A+H
Sbjct: 331 VVHTIWKPLPGQFDDYIANPKSNMYQSLHTAVIGPSGEPLEVQIRTWDMHWLAEYGVASH 390
Query: 397 WLYKETGNKLQSI 409
W YKE KL +
Sbjct: 391 WRYKEGKQKLDEL 403
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 85/149 (57%), Gaps = 12/149 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V+T+ A +LHDV++D + + +FG +V LV GV++L + +
Sbjct: 115 VNTLEAALLHDVLEDTSVTPEELSNKFGRDVLLLVDGVTKLG------------KITFKS 162
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A +LR M L M D RVVLIKLADRLHNM+TI L K +A+ETL I+ LA
Sbjct: 163 FEDYQAENLRKMFLVMAKDVRVVLIKLADRLHNMKTIQYLRMDKQIRIAKETLEIYAPLA 222
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMR 159
RLG++ +K ELED F + P+ + +R
Sbjct: 223 HRLGIYQIKRELEDAAFKIADPEAYYDIR 251
>gi|94310104|ref|YP_583314.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Cupriavidus
metallidurans CH34]
gi|93353956|gb|ABF08045.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Cupriavidus
metallidurans CH34]
Length = 742
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ ++ R K +YSI+ KMR K + +YD RA RV+V D I+ CY++L
Sbjct: 242 GIRAEVTGRPKHIYSIWKKMRGKALDFADLYDVRAFRVIVDD---------IKDCYTVLG 292
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAH
Sbjct: 293 IVHHIWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAH 352
Query: 397 WLYKETGNK 405
W YKE G K
Sbjct: 353 WRYKEAGGK 361
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN--QGTLGHEEANDLRVMLLGMVDDP 90
IEE FG++VA+LV GV +L I + + + + Q E+ LR MLL D
Sbjct: 85 IEERFGEDVARLVKGVRQLLRIGAIATQAEAVETSKSQAAARQEQVEALRKMLLAFAQDI 144
Query: 91 RVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 150
RVVL++LA RL +R + VA+ETL I+ LA+RLG+W +K ELEDL F
Sbjct: 145 RVVLVRLASRLQTLRWLAQTKSQPLPGVARETLDIYAPLANRLGIWQMKWELEDLAFRFE 204
Query: 151 QPQIFRKM 158
QP+ ++++
Sbjct: 205 QPETYKRI 212
>gi|254785342|ref|YP_003072771.1| GTP pyrophosphokinase [Teredinibacter turnerae T7901]
gi|237686776|gb|ACR14040.1| GTP pyrophosphokinase [Teredinibacter turnerae T7901]
Length = 747
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 88/126 (69%), Gaps = 9/126 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K +YSI+ KMRRK++G +VYD RA+R++V + + CY++L
Sbjct: 259 GVEAHIYGRAKHIYSIWRKMRRKNIGFSEVYDIRAVRILVNSE---------RECYTVLG 309
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+ LEVQIRT+ MH+ AE+G+ AH
Sbjct: 310 IVHALWRNIPREFDDYIANPKENGYRSLHTAVNGPNNQVLEVQIRTRTMHDEAEYGVCAH 369
Query: 397 WLYKET 402
W YK+T
Sbjct: 370 WRYKDT 375
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 14/176 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DT+VA +L+ V + + +EE+FG V L+ GV +++ I+ L + N+
Sbjct: 85 DTLVAAVLYRSVRERKLAADVVEEKFGKTVVGLIQGVQKMAAISGLSN-----HSNEHVF 139
Query: 72 GHEEAN---DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 128
G E A ++R ML+ MVDD RV LIKL++R +R + P + + VA+E ++
Sbjct: 140 GQESAEQSENVRKMLVAMVDDVRVALIKLSERTCAIRAVKGAPVERRQKVAKEVSEVYAP 199
Query: 129 LASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIV 182
LA RLG+ +K ELEDL F L P ++ +A + R +R Y R+ +I+
Sbjct: 200 LAHRLGIGHIKWELEDLSFRYLHPFDYKY----IAKLLDERRVDRQAYIDRVISIL 251
>gi|365175246|ref|ZP_09362677.1| RelA/SpoT family protein [Synergistes sp. 3_1_syn1]
gi|363613138|gb|EHL64661.1| RelA/SpoT family protein [Synergistes sp. 3_1_syn1]
Length = 784
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 89/133 (66%), Gaps = 9/133 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+ ++ R K YSI+ KMRRK++ + ++YD ALRV+V I CY +L
Sbjct: 281 NINASIKGRPKHFYSIYEKMRRKNLSLEQLYDLLALRVIV---------KTIGECYQVLG 331
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W PI G FDDYI NPK + YQSLHT V GP+G LEVQIRT++MH AE+G+AAH
Sbjct: 332 LVHTIWKPIPGLFDDYIANPKSNMYQSLHTTVVGPEGEPLEVQIRTKEMHLLAEYGIAAH 391
Query: 397 WLYKETGNKLQSI 409
W YKE G+K+ ++
Sbjct: 392 WNYKEGGHKVDNL 404
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 95/155 (61%), Gaps = 16/155 (10%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+VA +LHDV++D + + E+FG++V LV GV++L + ++
Sbjct: 117 ETIVASLLHDVLEDTATTPQQLSEKFGEDVVILVDGVTKLG------------KLQFKSV 164
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++ +LR M + M D RVVLIKLADRLHNMRTI + K ++A+ETL I+ LA
Sbjct: 165 EEYQSENLRKMFVVMAKDIRVVLIKLADRLHNMRTISSHKREKQLSIARETLEIYAPLAH 224
Query: 132 RLGLWALKAELEDLCFAVLQPQIF----RKMRADL 162
RLG++ +K ELEDL F +L P+++ R++R L
Sbjct: 225 RLGIYQVKRELEDLSFRILDPEMYYDIKRRVRKKL 259
>gi|375105841|ref|ZP_09752102.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderiales bacterium
JOSHI_001]
gi|374666572|gb|EHR71357.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderiales bacterium
JOSHI_001]
Length = 741
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K +YSI+ KM+ K + +V+D RALRV+V D + CY+ L
Sbjct: 242 GIGADVQGRPKHIYSIWKKMQGKRLHFEQVFDLRALRVIVAD---------VPACYAALA 292
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH+ + P+DGEFDDYI PK +GYQSLHT V DG +E+QIRT+ MH++AEHG+AAH
Sbjct: 293 IVHQRYRPVDGEFDDYIARPKANGYQSLHTVVLAEDGREVEIQIRTRAMHDHAEHGVAAH 352
Query: 397 WLYKETGNK 405
W YKE G K
Sbjct: 353 WAYKEAGTK 361
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+ + FGD A LVA +L + Q R ++ Q E+ +R MLL D RV
Sbjct: 91 VAKAFGDSYAHLVAYTRKLVQV-QRAARQAQVGAEQRA---EQTERVRKMLLAFSRDLRV 146
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL++LA RL +R A A A+A E+ ++ LA+RLG+W +K E+EDL F LQP
Sbjct: 147 VLLRLASRLQTLRWFAATKAACPPALAWESQQVFAPLANRLGIWQIKWEMEDLAFRFLQP 206
Query: 153 QIFRKM 158
++ +
Sbjct: 207 DDYKHV 212
>gi|226945754|ref|YP_002800827.1| RelA/SpoT protein [Azotobacter vinelandii DJ]
gi|226720681|gb|ACO79852.1| RelA/SpoT protein [Azotobacter vinelandii DJ]
Length = 749
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKADINGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GPDG LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHSLWRHIPREFDDYIANPKENGYRSLHTAVIGPDGKTLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G L+S SS E I
Sbjct: 366 WRYK--GTDLKSTSSHYEEKI 384
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 85/147 (57%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V +L ++ FG VAKL+ GV R++ I+ L + ++ T
Sbjct: 83 DSLVAAVLYRGVRQKQIALDEVQRRFGQVVAKLIEGVLRMAAISDSLNPRESLVLDAQT- 141
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +LR ML+ MVDD RV LIKLA+R +R + + + VA+E I+ LA
Sbjct: 142 ---QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKHADEERRQRVAREVSAIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P+ ++++
Sbjct: 199 RLGIGHIKWELEDLAFRYLEPEQYKQI 225
>gi|404400825|ref|ZP_10992409.1| (p)ppGpp synthetase SpoT/RelA [Pseudomonas fuscovaginae UPB0736]
Length = 746
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 102/164 (62%), Gaps = 18/164 (10%)
Query: 254 LTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALR 313
S V C+ LE ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+R
Sbjct: 238 FISEVMCQ--LENELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVR 290
Query: 314 VVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDG 373
V+V P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G
Sbjct: 291 VLV---------PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEG 341
Query: 374 SALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 417
LEVQIRT MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 342 KVLEVQIRTHAMHEEAELGVCAHWKYK--GTDVKSGSNHYEEKI 383
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 83/147 (56%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V L ++ ++FG VAKL+ GV R++ I+ L + +Q
Sbjct: 82 DSLVAAVLYRGVRQGQVQLQAVSQKFGPVVAKLIDGVQRMAAISASLSPRQ----SQVMG 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 SQVQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRNRVAREVFDIYAPLAH 197
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 RLGIGHIKWELEDLSFRYLEPDQYKQI 224
>gi|87118649|ref|ZP_01074548.1| RelA/SpoT protein [Marinomonas sp. MED121]
gi|86166283|gb|EAQ67549.1| RelA/SpoT protein [Marinomonas sp. MED121]
Length = 747
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 88/130 (67%), Gaps = 11/130 (8%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
L R K +YSI+ KM+RK++G +VYD RA+R++V DK CY +L VH L
Sbjct: 261 LMGRAKHIYSIWRKMKRKNIGFDEVYDVRAVRILV-DKT--------MDCYGVLGTVHTL 311
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI EFDDYI NPK +GYQSLHTAV GP+G A+E+QIRT KMHE AE G+ AHW YK
Sbjct: 312 WKPIPHEFDDYISNPKSNGYQSLHTAVVGPNGRAVEIQIRTHKMHEDAELGVCAHWKYK- 370
Query: 402 TGNKLQSISS 411
G L S SS
Sbjct: 371 -GTDLSSNSS 379
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 114/224 (50%), Gaps = 13/224 (5%)
Query: 6 SGKRA-VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI 64
SG RA D+++A L+ VV + ++ + + FG +VA ++ GV R+ +++ L +
Sbjct: 75 SGFRADQDSLLAAALYRVVREDQLAIEKVADMFGRKVASIIEGVIRMGEVSKNLSADTKA 134
Query: 65 NVNQGTLGHEEAN--DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQET 122
V LG+ E LR ML+ ++DD RVVL+KLA+R ++ A+ AVA E
Sbjct: 135 EV----LGNSENQLESLRKMLVSIIDDVRVVLVKLAERACAIKEAKHQDGARREAVALEV 190
Query: 123 LLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
++ LA RLG+ +K ELEDL F L P ++++ + W R+ I ++
Sbjct: 191 QSVYAPLAHRLGIGYIKWELEDLSFRYLYPVEYKRV-----AKWLDEKRIARQEYIDEVI 245
Query: 183 SSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
S+ ++ + + +H+ S+ + + + FD + D R
Sbjct: 246 STLDIELQKINIHADLMGRAKHIYSIWRKMKRKNIGFDEVYDVR 289
>gi|430809513|ref|ZP_19436628.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Cupriavidus sp. HMR-1]
gi|429498027|gb|EKZ96543.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Cupriavidus sp. HMR-1]
Length = 742
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ ++ R K +YSI+ KMR K + +YD RA RV+V D I+ CY++L
Sbjct: 242 GIRAEVTGRPKHIYSIWKKMRGKALDFADLYDVRAFRVIVDD---------IKDCYTVLG 292
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAH
Sbjct: 293 IVHHIWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAH 352
Query: 397 WLYKETGNK 405
W YKE G +
Sbjct: 353 WRYKEAGGR 361
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHR--RINVNQGTLGHEEANDLRVMLLGMVDDP 90
IEE FG++VA+LV GV +L I + + + +Q E+ LR MLL D
Sbjct: 85 IEERFGEDVARLVKGVRQLLRIGAIATQAETAETSKSQAAARQEQVEALRKMLLAFAQDI 144
Query: 91 RVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 150
RVVL++LA RL +R + VA+ETL I+ LA+RLG+W +K ELEDL F
Sbjct: 145 RVVLVRLASRLQTLRWLAQTKSQPLPGVARETLDIYAPLANRLGIWQMKWELEDLAFRFE 204
Query: 151 QPQIFRKM 158
QP+ ++++
Sbjct: 205 QPETYKRI 212
>gi|134095007|ref|YP_001100082.1| (p)ppGpp synthetase I [Herminiimonas arsenicoxydans]
gi|133738910|emb|CAL61957.1| GTP pyrophosphokinase [Herminiimonas arsenicoxydans]
Length = 761
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 97/162 (59%), Gaps = 17/162 (10%)
Query: 261 EEALEKELLISTSY--------IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 312
E+ +E+E + S G++ + R K ++SI+SK+R K++ +YD RA
Sbjct: 231 EKRVEREAFVENSIKRLKSEMAAAGIKAEVFGRPKHIFSIWSKLRGKEIEFSDLYDVRAF 290
Query: 313 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 372
RV+V D ++ CY++L IVH +W PI EFDDYI PK +GYQSLHT V D
Sbjct: 291 RVIVDD---------VKTCYTVLGIVHNIWTPIPEEFDDYISRPKANGYQSLHTIVIAED 341
Query: 373 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 414
G LEVQ+RT MH++AE+G+AAHW YKE+G + DE
Sbjct: 342 GRPLEVQVRTNDMHDFAEYGVAAHWRYKESGGSNFAGQKYDE 383
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 4/151 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQ--LLRRHRRINVNQG 69
DT +A +L ++ A + IEE FG +V+ LVAGV +L +++ + N N
Sbjct: 75 DTRIAALLFELEMIAPAAAEKIEERFGKDVSDLVAGVRQLMRLHEATFTQHEAARNKNAA 134
Query: 70 TLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIY--ALPPAKARAVAQETLLIWC 127
+ LR MLL M D RVVL++L R+ +R L ++R A+ET ++
Sbjct: 135 QEAAAQLEVLRKMLLAMASDMRVVLVRLGTRVTTLRYFADNKLVNERSRQYARETFDLYA 194
Query: 128 SLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W LK ELEDL F L+P+ +R++
Sbjct: 195 PLANRLGIWQLKWELEDLSFRFLEPEAYRRI 225
>gi|160872046|ref|ZP_02062178.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Rickettsiella
grylli]
gi|159120845|gb|EDP46183.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Rickettsiella
grylli]
Length = 736
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 85/121 (70%), Gaps = 9/121 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R+K +YSI+ KM++K + ++YD A+R++V ++ CY +L I+H LW P
Sbjct: 255 RVKHIYSIYKKMQQKKLKFEELYDLNAIRILVS---------TVRDCYHVLSIIHNLWSP 305
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I G+FDDYI PKP+GY+S+HTAV GP LE+QIRTQ+MH+ +EHGLAAHW YKET
Sbjct: 306 IAGQFDDYISTPKPNGYRSIHTAVIGPHKKVLEIQIRTQQMHQESEHGLAAHWQYKETAQ 365
Query: 405 K 405
+
Sbjct: 366 Q 366
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 85/147 (57%), Gaps = 8/147 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +++ V+ A L ++ E G VAK++ G +++ I RI L
Sbjct: 78 ETIAASLIYSCVNYAELCLDTVREHLGPNVAKIIEGAKQMNAI--------RIASPAANL 129
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ ++R MLL MV D RVVLIKLA+R MRT+ L ++A A+ETL I+ SLA+
Sbjct: 130 HQTQLENIRKMLLAMVKDMRVVLIKLAERTATMRTLDMLDTKTSQAYARETLDIYASLAN 189
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ L+ ELEDL L+P ++ ++
Sbjct: 190 RLGVGQLQWELEDLSLHYLEPTVYTQI 216
>gi|152985899|ref|YP_001349924.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PA7]
gi|150961057|gb|ABR83082.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PA7]
Length = 747
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 266 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 325
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 326 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 385
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 386 HEYAEHGLAAHWLYKETGNKLQS 408
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGT 70
+++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ L RH + Q
Sbjct: 83 ESLVAAVIYRGVREGTITLEAVNKRFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQA- 141
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 142 ----QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRHRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|333899695|ref|YP_004473568.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas fulva 12-X]
gi|333114960|gb|AEF21474.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas fulva 12-X]
Length = 748
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 93/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V PA++ CY+ L
Sbjct: 256 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PAVRDCYTALG 306
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 307 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTSNMHEEAELGVCAH 366
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 367 WRYK--GTDVKSGSNHYEEKI 385
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 86/148 (58%), Gaps = 5/148 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L + + FG VAKL+ GV R++ I+ L V L
Sbjct: 83 DSLVAAVIYRGVREGKIPLAEVRQRFGPVVAKLIEGVLRMAAISASLNPRGESTV----L 138
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + ++LR ML+ MVDD RV LIKLA+R +R + + + VA+E I+ LA
Sbjct: 139 GSQAQVDNLRKMLVAMVDDVRVALIKLAERTCAIRAVKDTDEERRQRVAREVFDIYAPLA 198
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P+ ++++
Sbjct: 199 HRLGIGHIKWELEDLSFRYLEPEQYKQI 226
>gi|288574632|ref|ZP_06392989.1| (p)ppGpp synthetase I, SpoT/RelA [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288570373|gb|EFC91930.1| (p)ppGpp synthetase I, SpoT/RelA [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 753
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 87/135 (64%), Gaps = 9/135 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K YSI KM RK + + ++YD A+R++V D I CY++L
Sbjct: 262 GIDALIKGRAKHFYSILEKMNRKGLSVDQLYDLLAMRIIVDD---------ITTCYTVLG 312
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 313 IVHTIWKPIPGQFDDYIANPKNNMYQSLHTTVVGPSGEPLEVQIRTWEMHWLAEYGVAAH 372
Query: 397 WLYKETGNKLQSISS 411
W YKE +K+ + +
Sbjct: 373 WRYKEGADKMDDLDA 387
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 87/152 (57%), Gaps = 12/152 (7%)
Query: 8 KRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN 67
K V T+ A +LHD ++D + ++ E FG+EV LV GV++L +
Sbjct: 94 KMDVKTMEAALLHDCIEDTVVTKEALAERFGEEVGVLVDGVTKLG------------KLP 141
Query: 68 QGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWC 127
+ +A +LR M L M D RVVLIKLADR HNMRT+ AL K + +A+ETL I+
Sbjct: 142 FKSFEDYQAENLRKMFLVMAKDIRVVLIKLADRTHNMRTLGALRKDKQQRIAKETLEIYA 201
Query: 128 SLASRLGLWALKAELEDLCFAVLQPQIFRKMR 159
LA RLG++ +K LEDL F P ++ +++
Sbjct: 202 PLAHRLGIYQVKRTLEDLAFKYYDPNMYYEIK 233
>gi|15596131|ref|NP_249625.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PAO1]
gi|107100390|ref|ZP_01364308.1| hypothetical protein PaerPA_01001415 [Pseudomonas aeruginosa PACS2]
gi|116048857|ref|YP_792342.1| GTP pyrophosphokinase [Pseudomonas aeruginosa UCBPP-PA14]
gi|218893097|ref|YP_002441966.1| GTP pyrophosphokinase [Pseudomonas aeruginosa LESB58]
gi|254245218|ref|ZP_04938540.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 2192]
gi|296390712|ref|ZP_06880187.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PAb1]
gi|313105818|ref|ZP_07792081.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 39016]
gi|355647570|ref|ZP_09055107.1| hypothetical protein HMPREF1030_04193 [Pseudomonas sp. 2_1_26]
gi|386060166|ref|YP_005976688.1| GTP pyrophosphokinase [Pseudomonas aeruginosa M18]
gi|386064659|ref|YP_005979963.1| GTP pyrophosphokinase [Pseudomonas aeruginosa NCGM2.S1]
gi|392985589|ref|YP_006484176.1| GTP pyrophosphokinase [Pseudomonas aeruginosa DK2]
gi|416858716|ref|ZP_11913485.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 138244]
gi|416875655|ref|ZP_11918813.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 152504]
gi|418583603|ref|ZP_13147672.1| GTP pyrophosphokinase [Pseudomonas aeruginosa MPAO1/P1]
gi|418588968|ref|ZP_13152898.1| GTP pyrophosphokinase [Pseudomonas aeruginosa MPAO1/P2]
gi|419753887|ref|ZP_14280285.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PADK2_CF510]
gi|421162455|ref|ZP_15621297.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 25324]
gi|421169697|ref|ZP_15627704.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 700888]
gi|421176068|ref|ZP_15633737.1| GTP pyrophosphokinase [Pseudomonas aeruginosa CI27]
gi|421182068|ref|ZP_15639553.1| GTP pyrophosphokinase [Pseudomonas aeruginosa E2]
gi|421515556|ref|ZP_15962242.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PAO579]
gi|424940017|ref|ZP_18355780.1| GTP pyrophosphokinase [Pseudomonas aeruginosa NCMG1179]
gi|451987418|ref|ZP_21935576.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas aeruginosa 18A]
gi|9946839|gb|AAG04323.1|AE004528_1 GTP pyrophosphokinase [Pseudomonas aeruginosa PAO1]
gi|115584078|gb|ABJ10093.1| GTP pyrophosphokinase [Pseudomonas aeruginosa UCBPP-PA14]
gi|126198596|gb|EAZ62659.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 2192]
gi|218773325|emb|CAW29137.1| GTP pyrophosphokinase [Pseudomonas aeruginosa LESB58]
gi|310878583|gb|EFQ37177.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 39016]
gi|334839201|gb|EGM17894.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 138244]
gi|334841754|gb|EGM20376.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 152504]
gi|346056463|dbj|GAA16346.1| GTP pyrophosphokinase [Pseudomonas aeruginosa NCMG1179]
gi|347306472|gb|AEO76586.1| GTP pyrophosphokinase [Pseudomonas aeruginosa M18]
gi|348033218|dbj|BAK88578.1| GTP pyrophosphokinase [Pseudomonas aeruginosa NCGM2.S1]
gi|354827764|gb|EHF11903.1| hypothetical protein HMPREF1030_04193 [Pseudomonas sp. 2_1_26]
gi|375047211|gb|EHS39760.1| GTP pyrophosphokinase [Pseudomonas aeruginosa MPAO1/P1]
gi|375052127|gb|EHS44586.1| GTP pyrophosphokinase [Pseudomonas aeruginosa MPAO1/P2]
gi|384399826|gb|EIE46191.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PADK2_CF510]
gi|392321094|gb|AFM66474.1| GTP pyrophosphokinase [Pseudomonas aeruginosa DK2]
gi|404349284|gb|EJZ75621.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PAO579]
gi|404525836|gb|EKA36084.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 700888]
gi|404531419|gb|EKA41374.1| GTP pyrophosphokinase [Pseudomonas aeruginosa CI27]
gi|404534535|gb|EKA44267.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 25324]
gi|404542788|gb|EKA52097.1| GTP pyrophosphokinase [Pseudomonas aeruginosa E2]
gi|451755036|emb|CCQ88099.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas aeruginosa 18A]
gi|453047959|gb|EME95672.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PA21_ST175]
Length = 747
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 266 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 325
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 326 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 385
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 386 HEYAEHGLAAHWLYKETGNKLQS 408
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGT 70
+++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ L RH + Q
Sbjct: 83 ESLVAAVIYRGVREGKITLEAVNKHFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQA- 141
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 142 ----QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRHRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|420141146|ref|ZP_14648853.1| GTP pyrophosphokinase [Pseudomonas aeruginosa CIG1]
gi|403246117|gb|EJY59866.1| GTP pyrophosphokinase [Pseudomonas aeruginosa CIG1]
Length = 747
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 266 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 325
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 326 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 385
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 386 HEYAEHGLAAHWLYKETGNKLQS 408
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGT 70
+++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ L RH + Q
Sbjct: 83 ESLVAAVIYRGVREGKITLEAVNKHFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQA- 141
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 142 ----QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRHRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|383758537|ref|YP_005437522.1| GTP pyrophosphokinase RelA [Rubrivivax gelatinosus IL144]
gi|381379206|dbj|BAL96023.1| GTP pyrophosphokinase RelA [Rubrivivax gelatinosus IL144]
Length = 745
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K L+SI+ KMR K + I +V+D ALRV+V D G CY+ L
Sbjct: 247 GLRAEVYGRPKHLHSIWKKMRGKGLPIERVFDLSALRVIVDDVAG---------CYAALS 297
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH + +DGE+DDYI PKP+GYQSLHT V DG ALEVQIRT+ MHE+AEHG+AAH
Sbjct: 298 RVHECYRAVDGEYDDYIARPKPNGYQSLHTVVLDDDGRALEVQIRTRAMHEHAEHGVAAH 357
Query: 397 WLYKETG 403
W+YKE G
Sbjct: 358 WMYKEAG 364
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+ + FG A LV RL I + R + + + MLL D RV
Sbjct: 96 VAKAFGQSYASLVTHTRRLVQIQRATRAATVLEAQRQQQAEQVRK----MLLAFSHDLRV 151
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL++LA RL +R A +A+ET I+ LA+RLG+W +K ELEDL F LQP
Sbjct: 152 VLLRLASRLQTLRWYAAERVPCPEVLAEETQQIFAPLANRLGIWQIKWELEDLAFRFLQP 211
Query: 153 QIFRKM 158
++++
Sbjct: 212 DEYKRI 217
>gi|254239285|ref|ZP_04932608.1| GTP pyrophosphokinase [Pseudomonas aeruginosa C3719]
gi|126171216|gb|EAZ56727.1| GTP pyrophosphokinase [Pseudomonas aeruginosa C3719]
Length = 747
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 266 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 325
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 326 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 385
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 386 HEYAEHGLAAHWLYKETGNKLQS 408
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGT 70
+++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ L RH + Q
Sbjct: 83 ESLVAAVIYRGVREGKITLEAVNKHFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQA- 141
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 142 ----QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRHRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|320594365|gb|ADW54434.1| RelA [Pseudomonas sp. DF41]
gi|342674037|gb|AEL31268.1| RelA [Pseudomonas chlororaphis]
Length = 747
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 266 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 325
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 326 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 385
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 386 HEYAEHGLAAHWLYKETGNKLQS 408
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGT 70
+++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ L RH + Q
Sbjct: 83 ESLVAAVIYRGVREGKITLEAVNKHFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQA- 141
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +LR ML+ MVDD RV LI+LA+R +R + K VA+E I+ LA
Sbjct: 142 ----QVENLRKMLVAMVDDVRVALIRLAERTCAIRAVKNADEEKRHCVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|332524801|ref|ZP_08400994.1| GTP diphosphokinase [Rubrivivax benzoatilyticus JA2]
gi|332108103|gb|EGJ09327.1| GTP diphosphokinase [Rubrivivax benzoatilyticus JA2]
Length = 744
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K L+SI+ KMR K + I +V+D ALRV+V D G CY+ L
Sbjct: 247 GIRAEVHGRPKHLHSIWKKMRGKGLPIERVFDLSALRVIVDDVAG---------CYAALS 297
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH + +DGE+DDYI PKP+GYQSLHT V DG ALEVQIRT+ MHE+AEHG+AAH
Sbjct: 298 RVHECFRAVDGEYDDYIARPKPNGYQSLHTVVLDDDGRALEVQIRTRAMHEHAEHGVAAH 357
Query: 397 WLYKETG 403
W+YKE G
Sbjct: 358 WMYKEAG 364
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+ + FG A LV RL I + R + + + MLL D RV
Sbjct: 96 VAKAFGQSYASLVTHTRRLVQIQRATRAASVLEAQRQQQAEQVRK----MLLAFSHDLRV 151
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL++LA RL +R A + +A+ET I+ LA+RLG+W +K ELEDL F LQP
Sbjct: 152 VLLRLASRLQTLRWYAAERVPCPQELAEETQQIFAPLANRLGIWQIKWELEDLAFRFLQP 211
Query: 153 QIFRKM 158
+ ++++
Sbjct: 212 EEYKRI 217
>gi|319762029|ref|YP_004125966.1| rela/spot family protein [Alicycliphilus denitrificans BC]
gi|317116590|gb|ADU99078.1| RelA/SpoT family protein [Alicycliphilus denitrificans BC]
Length = 748
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ ++S R K +YSI KMR K + +V+D RALRV+V P+++ CY+ L
Sbjct: 260 ISASVSGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVIV---------PSVKDCYAALSW 310
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + I+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 311 VHSQFTSIEAEFDDYIARPKPNGYQSLHTVVRDEAGRAIEIQIRTQAMHDHAEHGVAAHW 370
Query: 398 LYKETGNK 405
YKE G K
Sbjct: 371 AYKEAGTK 378
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 27 CESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVM 82
CE L EE FG A L ++L + QL R ++ Q + ++R M
Sbjct: 95 CEHLNKPEEVIGKAFGSNFAALAVETTKLMRV-QLQAREAQVAGLQVDDAATQTENVRKM 153
Query: 83 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 142
LL D RVV+++LA RL +R A + A+A+E L ++ LA+RLG+W +K EL
Sbjct: 154 LLAFSRDLRVVMLRLASRLQTLRYYAAAKRPVSPAIAREALQVFAPLANRLGIWQMKWEL 213
Query: 143 EDLCFAVLQPQIFRKM 158
EDL F L+P +R++
Sbjct: 214 EDLAFRFLEPDTYREV 229
>gi|325266683|ref|ZP_08133360.1| GTP diphosphokinase [Kingella denitrificans ATCC 33394]
gi|324982126|gb|EGC17761.1| GTP diphosphokinase [Kingella denitrificans ATCC 33394]
Length = 726
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E ++ R K +YSI+ KM +K + +YD RA+RV+V + CYS+L
Sbjct: 242 GIECDVAGRPKHIYSIYRKMVKKKLDFDGLYDIRAVRVLVN---------TVPECYSVLG 292
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT +MHE+ E G+AAH
Sbjct: 293 IVHSLWQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGIEVQIRTNEMHEFNEFGVAAH 352
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 353 WRYKEGGK 360
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 79/149 (53%), Gaps = 6/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
++V A +L D A + E G VA LV G+ + + + +
Sbjct: 68 ESVAATVLTDAPAHADNWEERVTEACGGAVANLVKGIDEVQKLTHFAKVDSLATPEERA- 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP--PAKARAVAQETLLIWCSL 129
+A +R MLL MV D RVVLIKLA R M+ + P PAK RA+A+ETL I+ L
Sbjct: 127 --AQAETMRKMLLAMVSDIRVVLIKLALRTRTMQFLSQTPDSPAK-RALAKETLDIFAPL 183
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+RLG+W LK +LEDL F P+ +R++
Sbjct: 184 ANRLGVWQLKWQLEDLGFRHYNPEEYRRI 212
>gi|330826152|ref|YP_004389455.1| (p)ppGpp synthetase I SpoT/RelA [Alicycliphilus denitrificans K601]
gi|329311524|gb|AEB85939.1| (p)ppGpp synthetase I, SpoT/RelA [Alicycliphilus denitrificans
K601]
Length = 748
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ ++S R K +YSI KMR K + +V+D RALRV+V P+++ CY+ L
Sbjct: 260 ISASVSGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVIV---------PSVKDCYAALSW 310
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + I+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 311 VHSQFTSIEAEFDDYIARPKPNGYQSLHTVVRDEAGRAIEIQIRTQAMHDHAEHGVAAHW 370
Query: 398 LYKETGNK 405
YKE G K
Sbjct: 371 AYKEAGTK 378
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 27 CESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVM 82
CE L EE FG A L ++L + QL R ++ Q + ++R M
Sbjct: 95 CEHLNKPEEVIGKAFGSNFAALAVETTKLMRV-QLQAREAQVAGLQVDDAATQTENVRKM 153
Query: 83 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 142
LL D RVV+++LA RL +R A + A+A+E L ++ LA+RLG+W +K EL
Sbjct: 154 LLAFSRDLRVVMLRLASRLQTLRYYAAAKRPVSPAIAREALQVFAPLANRLGIWQMKWEL 213
Query: 143 EDLCFAVLQPQIFRKM 158
EDL F L+P +R++
Sbjct: 214 EDLAFRFLEPDTYREV 229
>gi|399521243|ref|ZP_10761983.1| GTP pyrophosphokinase [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399110481|emb|CCH38542.1| GTP pyrophosphokinase [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 747
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRALRVLV---------PEVRDCYTTLG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L ++++ FG VAKL+ GV R++ I+ + + V T
Sbjct: 83 DSLVAAVIYRGVREGKITLAAVQQRFGAVVAKLIEGVLRMAAISASINPRESVVVGSQT- 141
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +LR ML+ MVDD RV LIKLA+R +R + K + VA+E I+ LA
Sbjct: 142 ---QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKEADEDKRQRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|443469722|ref|ZP_21059876.1| GTP pyrophosphokinase [Pseudomonas pseudoalcaligenes KF707]
gi|442899174|gb|ELS25705.1| GTP pyrophosphokinase [Pseudomonas pseudoalcaligenes KF707]
Length = 748
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GPDG LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPDGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQS 408
W YK T K S
Sbjct: 366 WRYKGTDVKSSS 377
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 87/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+++VA +++ V + L ++++ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 ESLVAAVIYRGVREGKIQLQAVQQRFGAVVAKLIEGVLRMAAISASLNPRQSM-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GAQAQVENLRKMLVAMVDDVRVALIKLAERTCAIREVKNADEEKRHRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P+ ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|440736805|ref|ZP_20916390.1| GTP pyrophosphokinase [Pseudomonas fluorescens BRIP34879]
gi|447917681|ref|YP_007398249.1| GTP pyrophosphokinase [Pseudomonas poae RE*1-1-14]
gi|440382737|gb|ELQ19229.1| GTP pyrophosphokinase [Pseudomonas fluorescens BRIP34879]
gi|445201544|gb|AGE26753.1| GTP pyrophosphokinase [Pseudomonas poae RE*1-1-14]
Length = 747
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQS 408
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIELATVGQRFGSVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|294101598|ref|YP_003553456.1| (p)ppGpp synthetase I SpoT/RelA [Aminobacterium colombiense DSM
12261]
gi|293616578|gb|ADE56732.1| (p)ppGpp synthetase I, SpoT/RelA [Aminobacterium colombiense DSM
12261]
Length = 734
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 85/130 (65%), Gaps = 9/130 (6%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+ R K YSI+ KM RK + + ++YD ALRVVV D + CY++L IVH +
Sbjct: 251 VKGRAKHFYSIYEKMNRKKLPVEQLYDLLALRVVVDD---------VAACYTVLGIVHTI 301
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI G+FDDYI NPK + YQSLHT V GP G LEVQIR+ +M+ AE+G+AAHW YKE
Sbjct: 302 WKPIPGQFDDYIANPKTNMYQSLHTTVVGPTGEPLEVQIRSAEMNRLAEYGIAAHWRYKE 361
Query: 402 TGNKLQSISS 411
GN L + +
Sbjct: 362 GGNVLDDLDA 371
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 86/147 (58%), Gaps = 12/147 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T++A +LHDV++D S ++ FGD+V LV GV++L + +
Sbjct: 83 TLIAALLHDVLEDTALSAEKVKSAFGDDVITLVDGVTKLG------------KLPFKSFE 130
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A +LR M + M D RVVLIKLADRLHNMRT+ AL K +A+ETL I+ LA R
Sbjct: 131 DYQAENLRKMFVVMAKDIRVVLIKLADRLHNMRTLGALRRDKQLRIAKETLEIYAPLAHR 190
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMR 159
LG++ +K LEDL F P ++ ++R
Sbjct: 191 LGIYQVKRGLEDLAFKYSDPDMYYEIR 217
>gi|408480593|ref|ZP_11186812.1| GTP pyrophosphokinase, partial [Pseudomonas sp. R81]
Length = 599
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQS 408
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 98/173 (56%), Gaps = 9/173 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIQLATVGQRFGSVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 184
RLG+ +K ELEDL F L+P +++ +A++ R R+ R IT +++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQ----IATLLHER-RLDRERFITDVMNQ 246
>gi|421139488|ref|ZP_15599527.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens
BBc6R8]
gi|404509404|gb|EKA23335.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens
BBc6R8]
Length = 747
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQS 408
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIQLPTVSQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|395798927|ref|ZP_10478210.1| GTP pyrophosphokinase [Pseudomonas sp. Ag1]
gi|395337161|gb|EJF69019.1| GTP pyrophosphokinase [Pseudomonas sp. Ag1]
Length = 747
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQS 408
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D+++A +L+ V + L +I + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIQLPTISQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|395500048|ref|ZP_10431627.1| GTP pyrophosphokinase [Pseudomonas sp. PAMC 25886]
Length = 747
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQS 408
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIQLPTVSQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|229591916|ref|YP_002874035.1| GTP pyrophosphokinase [Pseudomonas fluorescens SBW25]
gi|229363782|emb|CAY51208.1| GTP pyrophosphokinase [Pseudomonas fluorescens SBW25]
Length = 747
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQS 408
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D+++A +L+ V + +L + + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIALPIVSQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|325274863|ref|ZP_08140878.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas sp. TJI-51]
gi|324100011|gb|EGB97842.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas sp. TJI-51]
Length = 746
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 93/145 (64%), Gaps = 14/145 (9%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMKRKGLEFSQIYDVRAVRVLV------- 294
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 384 KMHEYAEHGLAAHWLYKETGNKLQS 408
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 87/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + A K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKAADDEKRLRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P+ ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|431801220|ref|YP_007228123.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida HB3267]
gi|430791985|gb|AGA72180.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida HB3267]
Length = 746
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%), Gaps = 16/154 (10%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 384 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 417
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 353 GMHEEAELGVCAHWRYK--GTDVKSSSNHYEEKI 384
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + A K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKAADDEKRLRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|121611280|ref|YP_999087.1| (p)ppGpp synthetase I SpoT/RelA [Verminephrobacter eiseniae EF01-2]
gi|121555920|gb|ABM60069.1| (p)ppGpp synthetase I, SpoT/RelA [Verminephrobacter eiseniae
EF01-2]
Length = 736
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 87/128 (67%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ ++ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 248 ISASVQGRPKHIYSIVRKMRGKALNFDQVFDIRALRVVV---------PTVKDCYAALSW 298
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH+ + PI+ EFDDYI PKP+GYQSLHT V+ +G +E+Q+RTQ MH +AEHG+AAHW
Sbjct: 299 VHQQFKPIEQEFDDYIARPKPNGYQSLHTVVRDDNGKPIEIQLRTQAMHRHAEHGMAAHW 358
Query: 398 LYKETGNK 405
+YKE G+K
Sbjct: 359 VYKEAGSK 366
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 26 ACESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EANDLR 80
AC L EE FG A L + QL+R R+ Q + ++R
Sbjct: 86 ACIHLNKPEELITKTFGANFATLALETT------QLMRVQRQARAAQPVDDPALQTENVR 139
Query: 81 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 140
MLL D RVVL+ LA RL +R A + + +E+L ++ LA+RLG+W +K
Sbjct: 140 KMLLAFSRDLRVVLLHLASRLQTLRFHAASKRPVSPGLVRESLQVFAPLANRLGIWQMKW 199
Query: 141 ELEDLCFAVLQPQIFRKM 158
ELEDLC L+P +++++
Sbjct: 200 ELEDLCLRFLEPDVYKQV 217
>gi|339486235|ref|YP_004700763.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida S16]
gi|338837078|gb|AEJ11883.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida S16]
Length = 773
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%), Gaps = 16/154 (10%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 274 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 321
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 322 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 379
Query: 384 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 417
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 380 GMHEEAELGVCAHWRYK--GTDVKSSSNHYEEKI 411
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 110 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 164
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + A K VA+E I+ LA
Sbjct: 165 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKAADDEKRLRVAREVFDIYAPLA 224
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 225 HRLGIGHIKWELEDLSFRYLEPDQYKQI 252
>gi|410092308|ref|ZP_11288837.1| RelA/SpoT protein [Pseudomonas viridiflava UASWS0038]
gi|409760333|gb|EKN45487.1| RelA/SpoT protein [Pseudomonas viridiflava UASWS0038]
Length = 747
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 97/154 (62%), Gaps = 16/154 (10%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
LE ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LENELLAT-----GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV------- 294
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 384 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 417
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 353 SMHEEAELGVCAHWRYK--GTDVKSGSNHYEEKI 384
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 87/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L +E++FG+ VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRGVREGVIPLPDVEQQFGETVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|304310589|ref|YP_003810187.1| GTP pyrophosphokinase [gamma proteobacterium HdN1]
gi|301796322|emb|CBL44530.1| GTP pyrophosphokinase [gamma proteobacterium HdN1]
Length = 755
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K +YSI+ KM+RK + ++VYD RA+RV+V P I+ CY+ L
Sbjct: 257 GIEAEVKGRAKHIYSIWRKMKRKSIDFYQVYDVRAVRVLV---------PEIRDCYAALG 307
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I H LW I EFDDYI PK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 308 IAHNLWQHIPREFDDYIATPKENGYRSLHTAVLGPEGKVLEVQIRTFSMHEEAELGVCAH 367
Query: 397 WLYKETGNK 405
W YKE N+
Sbjct: 368 WRYKEGNNQ 376
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 88/147 (59%), Gaps = 3/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ A +++ V + +L S+ + G +AKL+ GV R++ I+ +++ + Q +
Sbjct: 84 DSLKAAVIYRAVREGQITLESVRKTAGPGIAKLIEGVLRMAAISVATNPEKKVVLGQSS- 142
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++ ++LR ML+ M+DD RV LIKLA+R +R + P AK + VA+E I+ LA
Sbjct: 143 --DQLDNLRKMLIAMIDDVRVALIKLAERTCAIRAVKDAPDAKRQRVAREVFDIYAPLAH 200
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F LQP + ++
Sbjct: 201 RLGIGHIKWELEDLAFRYLQPDAYMRI 227
>gi|395648544|ref|ZP_10436394.1| GTP pyrophosphokinase [Pseudomonas extremaustralis 14-3 substr.
14-3b]
Length = 747
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P I+ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEIRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQS 408
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 9/197 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIPLATVGQRFGSVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ +K ELEDL F L+P +++ +A++ R R+ R IT ++ + +
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQ----IATLLHER-RLDRERFITDVMGQLRAELQA 253
Query: 192 ASDDESFTTFDEHVLSM 208
D + +H+ S+
Sbjct: 254 TGVDADISGRAKHIYSI 270
>gi|381158677|ref|ZP_09867910.1| (p)ppGpp synthetase, RelA/SpoT family [Thiorhodovibrio sp. 970]
gi|380880035|gb|EIC22126.1| (p)ppGpp synthetase, RelA/SpoT family [Thiorhodovibrio sp. 970]
Length = 750
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/128 (53%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI+ KM+RK V I +++D RALRV+V D I CY+ L
Sbjct: 249 GIEAQISGRPKHIYSIWRKMQRKRVDIEQIFDLRALRVIVAD---------IPACYAALG 299
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW I EFDDYI PK + Y+SLHTAV GP+ LEVQIRTQ+MHE+AE G+AAH
Sbjct: 300 VVHGLWKHIPREFDDYIATPKGNLYRSLHTAVIGPEDKPLEVQIRTQEMHEHAELGVAAH 359
Query: 397 WLYKETGN 404
W YKE
Sbjct: 360 WAYKEAAG 367
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 87/151 (57%), Gaps = 6/151 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DT+ A +L+ + + + E FG +A++VA + R+ + + R I +
Sbjct: 79 DTLCAALLNGCLGREQVTEDRLAERFGPGIARMVADLGRIGALTNVAR----IIAEKDQH 134
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
HEE +LR +LLG+ +D RVVL+ LA+RL MR L PA+ A+A++T ++ LA+
Sbjct: 135 EHEE--NLRRLLLGIAEDVRVVLVVLAERLQLMRAAKLLEPARQTALAEDTERVYAPLAN 192
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
RLG+W +K ELEDL P+ ++++ + L
Sbjct: 193 RLGVWQIKWELEDLALRYRHPKDYKRVASAL 223
>gi|312795968|ref|YP_004028890.1| GTP pyrophosphokinase / Guanosine-3',5'-bis(Diphosphate)
3'-pyrophosphohydrolase [Burkholderia rhizoxinica HKI
454]
gi|312167743|emb|CBW74746.1| GTP pyrophosphokinase (EC 2.7.6.5) /
Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase
(EC 3.1.7.2) [Burkholderia rhizoxinica HKI 454]
Length = 741
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KMR K + ++ D RA RV+V P ++ CY++L I
Sbjct: 238 IDAEVSGRPKHIYSIWRKMRGKKLEFSELNDVRAFRVIV---------PDVKDCYTVLGI 288
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH +W P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT MH +AE+G+AAHW
Sbjct: 289 VHNIWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHDMHRFAEYGIAAHW 348
Query: 398 LYKETGNK 405
YKE G +
Sbjct: 349 RYKEAGTR 356
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 80/151 (52%), Gaps = 10/151 (6%)
Query: 15 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQG--TLG 72
VA L V+ E + E FG++V +LV V +L + + + + ++G
Sbjct: 60 VAAALFPVIPYLSEPERLLGERFGEDVLQLVTDVRKLLRLGVIGIQATTPDSDKGRDAQA 119
Query: 73 HEEAN--DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYA---LPPAKARAVAQETLLIWC 127
H A LR ML+ D RVVLI+LA RL +R A PPA+ + +ETL I+
Sbjct: 120 HRRAQVEALRKMLMAFAQDIRVVLIRLASRLQTLRFYAAHKLAPPAE---LPRETLEIYA 176
Query: 128 SLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W LK ELEDL F +P ++++
Sbjct: 177 PLANRLGIWQLKWELEDLAFRFEEPATYKRI 207
>gi|26988388|ref|NP_743813.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida KT2440]
gi|24983142|gb|AAN67277.1|AE016354_4 GTP pyrophosphokinase [Pseudomonas putida KT2440]
Length = 746
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 93/145 (64%), Gaps = 14/145 (9%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 384 KMHEYAEHGLAAHWLYKETGNKLQS 408
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|421155567|ref|ZP_15615043.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 14886]
gi|404520448|gb|EKA31121.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 14886]
Length = 747
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQS 408
W YK T K S
Sbjct: 366 WRYKGTDVKASS 377
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGT 70
+++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ L RH + Q
Sbjct: 83 ESLVAAVIYRGVREGKITLEAVNKHFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQA- 141
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 142 ----QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRHRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|270160131|ref|ZP_06188787.1| stringent stress response protein RelA [Legionella longbeachae
D-4968]
gi|289165092|ref|YP_003455230.1| GTP pyrophosphokinase [Legionella longbeachae NSW150]
gi|269988470|gb|EEZ94725.1| stringent stress response protein RelA [Legionella longbeachae
D-4968]
gi|288858265|emb|CBJ12133.1| GTP pyrophosphokinase [Legionella longbeachae NSW150]
Length = 734
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 84/121 (69%), Gaps = 9/121 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K ++SI+ KM RK+V + ++YDA A+RV+V K P CY +L +VH LW
Sbjct: 257 RSKHIHSIYKKMTRKNVSLDEIYDATAVRVLVDTK------PQ---CYEVLGMVHTLWKQ 307
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I EFDDYI+NPK +GYQSLHTAVQGP+G EVQIRT MH+ AE G+AAHW YKE G
Sbjct: 308 ISAEFDDYIINPKANGYQSLHTAVQGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKEGGG 367
Query: 405 K 405
K
Sbjct: 368 K 368
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 6/153 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A I+ + V A S+ + E+ G +AKLV G+ R+S + H +N+
Sbjct: 78 ETLAAAIIFENVHYADLSVDDVAEQLGPNIAKLVKGIERMSAM------HSFQALNKYPQ 131
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++ +++R MLL MVDD R VLIKLA+RL +RT L + +A E + I+ LA+
Sbjct: 132 NKQQIDNIRKMLLAMVDDVRAVLIKLAERLCVLRTASHLSEELRKQLATEAMEIYAPLAN 191
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 164
RLG+ A+K E+EDL F L P ++ + L +
Sbjct: 192 RLGIGAIKWEMEDLAFRYLHPDDYKAIAKGLKA 224
>gi|337279372|ref|YP_004618844.1| GTP pyrophosphokinase [Ramlibacter tataouinensis TTB310]
gi|334730449|gb|AEG92825.1| candidate GTP pyrophosphokinase (GTP pyrophosphokinase)
[Ramlibacter tataouinensis TTB310]
Length = 733
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 94/155 (60%), Gaps = 15/155 (9%)
Query: 263 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 322
+LE EL ++ G+ + R K +YSI KMR K + V+D RALRV+V
Sbjct: 239 SLEAELRVN-----GIPAQVHGRPKHIYSIVKKMRGKSLDFEHVFDVRALRVIV------ 287
Query: 323 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 382
P ++ CY+ L VH + PI EFDDYI PKP+GYQSLHT V+ G +E+Q+RT
Sbjct: 288 ---PEVRDCYAALAWVHERFEPIASEFDDYIARPKPNGYQSLHTVVRDEAGRPIEIQVRT 344
Query: 383 QKMHEYAEHGLAAHWLYKETGNK-LQSISSMDESD 416
Q MHE+AEHG+AAHW YKE G K +S+ E D
Sbjct: 345 QAMHEHAEHGVAAHWAYKEAGAKGYAGVSASSEYD 379
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 53/84 (63%)
Query: 75 EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 134
+A +R MLL D RVV+++LA RL +R A R+VA+E L ++ LA+RLG
Sbjct: 135 QAEKVRKMLLAFSRDLRVVMLRLASRLQTLRWHAAAKTLAPRSVAREALQVFAPLANRLG 194
Query: 135 LWALKAELEDLCFAVLQPQIFRKM 158
+W LK E+EDL F L+P ++++
Sbjct: 195 IWQLKWEMEDLAFRFLEPATYKQV 218
>gi|389774995|ref|ZP_10193081.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter spathiphylli
B39]
gi|388437660|gb|EIL94442.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter spathiphylli
B39]
Length = 710
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 113/329 (34%), Positives = 147/329 (44%), Gaps = 98/329 (29%)
Query: 76 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 135
A LR +LL +V D RVV + LA +L MR L + +A+A+ T I LA+RLG+
Sbjct: 111 AEGLRRLLLAIVRDLRVVFVLLARQLARMRAAANLADDERQALARLTRDIHAPLANRLGI 170
Query: 136 WALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDD 195
W LK ELEDL F LQP + RRI + LDER A D
Sbjct: 171 WQLKWELEDLAFRYLQPDTY--------------------RRIARL-----LDERRA-DR 204
Query: 196 ESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALT 255
E+F S+ +L A+ DI +D R K ++ + K + Q+K+ D
Sbjct: 205 EAFIRE-----SLDELQRALAAADIRADLAGRPKHIYSIWK--KMQRKSLDFSD------ 251
Query: 256 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
LY I RA+R++
Sbjct: 252 ---------------------------------LYDI-----------------RAVRIL 261
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V + I CY+ L +VH W + EFDDYI PK +GYQSLHTAV GP G
Sbjct: 262 VDN---------ITDCYAALGVVHGRWPHLPNEFDDYIARPKANGYQSLHTAVIGPAGKT 312
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
LEVQIRT +MH E G+AAHW YKE G+
Sbjct: 313 LEVQIRTHEMHRANELGVAAHWRYKEGGS 341
>gi|422658161|ref|ZP_16720597.1| GTP pyrophosphokinase, partial [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|331016788|gb|EGH96844.1| GTP pyrophosphokinase, partial [Pseudomonas syringae pv. lachrymans
str. M302278]
Length = 599
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSSSNHYEEKI 384
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 G-HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GIQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|372489431|ref|YP_005028996.1| RelA/SpoT family (p)ppGpp synthetase [Dechlorosoma suillum PS]
gi|359355984|gb|AEV27155.1| (p)ppGpp synthetase, RelA/SpoT family [Dechlorosoma suillum PS]
Length = 740
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 92/133 (69%), Gaps = 10/133 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+ R K +YSI++KMR+K V +VYD RALRV+V + ++ CY++L IVH +
Sbjct: 256 IYGRPKHIYSIWNKMRKKGVDFSEVYDIRALRVIVDE---------VKDCYTVLGIVHNI 306
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI EFDDYI NPK + Y+SLHTAV+ PDG +LEVQIRT +MH +AE G+AAHW YKE
Sbjct: 307 WTPIPKEFDDYISNPKGNNYRSLHTAVRCPDGRSLEVQIRTWEMHRHAELGVAAHWRYKE 366
Query: 402 TGNKLQSISSMDE 414
G K S + D+
Sbjct: 367 -GTKHSSEDNYDD 378
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
LI + K D+ A +L V + L ++ E FG VA LV G+SRL+ + + R
Sbjct: 64 LIIAGLKLDADSRAAALLFAVATYDEKGLETLNERFGGGVAHLVGGISRLNRLRPISRGF 123
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARA-VAQ 120
+ LR M L MV+D RVVL++LA R +R YA P R VA+
Sbjct: 124 VADTTQNPQEMKAQVEVLRKMFLAMVEDIRVVLLRLASRTQTLR-YYAAEPDDLRVHVAR 182
Query: 121 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
ETL ++ LA+RLG+W LK ELEDL F + P ++K+
Sbjct: 183 ETLELYSPLANRLGVWELKWELEDLSFRFIHPDTYKKI 220
>gi|77460438|ref|YP_349945.1| (p)ppGpp synthetase SpoT/RelA [Pseudomonas fluorescens Pf0-1]
gi|398979244|ref|ZP_10688299.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM25]
gi|77384441|gb|ABA75954.1| GTP pyrophosphokinase [Pseudomonas fluorescens Pf0-1]
gi|398135907|gb|EJM25009.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM25]
Length = 747
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIELAAVSQRFGPVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|374702789|ref|ZP_09709659.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas sp. S9]
Length = 748
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIEADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PQMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTAAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 87/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ + + L
Sbjct: 83 DSLVAAVLYRGVREGTVELAAVHQRFGPVVAKLIEGVLRMAAISASMNPR-----DSMVL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + ++LR ML+ MVDD RV LIKLA+R +R + K + VA+E I+ LA
Sbjct: 138 GSQAQVDNLRKMLVAMVDDVRVALIKLAERTCAIRAVKLADDEKRQRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P+ ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|167032269|ref|YP_001667500.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida GB-1]
gi|166858757|gb|ABY97164.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida GB-1]
Length = 746
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 384 KMHEYAEHGLAAHWLYKETGNKLQS 408
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + A K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKAADDEKRLRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|28868900|ref|NP_791519.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato str. DC3000]
gi|28852139|gb|AAO55214.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato str. DC3000]
Length = 744
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 252 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 302
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 303 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 362
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 363 WRYK--GTDVKSSSNHYEEKI 381
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 80 DSLVAAVMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VL 134
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 135 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 194
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 195 HRLGIGHIKWELEDLSFRYLEPDQYKQI 222
>gi|386013472|ref|YP_005931749.1| GTP pyrophosphokinase [Pseudomonas putida BIRD-1]
gi|313500178|gb|ADR61544.1| GTP pyrophosphokinase [Pseudomonas putida BIRD-1]
Length = 741
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 242 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 289
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 290 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 347
Query: 384 KMHEYAEHGLAAHWLYKETGNKLQS 408
MHE AE G+ AHW YK T K S
Sbjct: 348 GMHEEAELGVCAHWRYKGTDVKPSS 372
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 78 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 132
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 133 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLA 192
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 193 HRLGIGHIKWELEDLSFRYLEPDQYKQI 220
>gi|422667889|ref|ZP_16727749.1| RelA/SpoT protein, partial [Pseudomonas syringae pv. aptata str.
DSM 50252]
gi|330980190|gb|EGH78361.1| RelA/SpoT protein [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 386
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNK 405
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRGVREGLIALPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|302132005|ref|ZP_07257995.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato NCPPB 1108]
Length = 747
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSSSNHYEEKI 384
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA ++ V + L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAGMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|148549268|ref|YP_001269370.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida F1]
gi|421522586|ref|ZP_15969227.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida LS46]
gi|148513326|gb|ABQ80186.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida F1]
gi|402753686|gb|EJX14179.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida LS46]
Length = 746
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 384 KMHEYAEHGLAAHWLYKETGNKLQS 408
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|395444967|ref|YP_006385220.1| ppGpp synthetase I SpoT/RelA [Pseudomonas putida ND6]
gi|397696412|ref|YP_006534295.1| GTP pyrophosphokinase [Pseudomonas putida DOT-T1E]
gi|388558964|gb|AFK68105.1| ppGpp synthetase I SpoT/RelA [Pseudomonas putida ND6]
gi|397333142|gb|AFO49501.1| GTP pyrophosphokinase [Pseudomonas putida DOT-T1E]
Length = 741
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 242 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 289
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 290 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 347
Query: 384 KMHEYAEHGLAAHWLYKETGNKLQS 408
MHE AE G+ AHW YK T K S
Sbjct: 348 GMHEEAELGVCAHWRYKGTDVKPSS 372
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 78 DSLVAAVIYRSVREGKVTLAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 132
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 133 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLA 192
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 193 HRLGIGHIKWELEDLSFRYLEPDQYKQI 220
>gi|213971907|ref|ZP_03400007.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato T1]
gi|301384477|ref|ZP_07232895.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato Max13]
gi|213923332|gb|EEB56927.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato T1]
Length = 747
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSSSNHYEEKI 384
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|451936564|ref|YP_007460418.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
gi|451777487|gb|AGF48462.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
Length = 279
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ RLK +YSI++KMR K++ K+YD A+R+VV D I+ CY +LD
Sbjct: 155 GIKSEINGRLKHIYSIWNKMRIKNIDFAKLYDLSAVRIVVDD---------IKTCYIVLD 205
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H+LW I EFDDYI PK +GYQSLHT V D +E+QIRT MH +AEHGLAAH
Sbjct: 206 IIHKLWNHIPEEFDDYISKPKANGYQSLHTVVIDKDNYLIEIQIRTYNMHNFAEHGLAAH 265
Query: 397 WLYKETGN 404
W YK+ N
Sbjct: 266 WYYKKFRN 273
>gi|410663229|ref|YP_006915600.1| GTP pyrophosphokinase [Simiduia agarivorans SA1 = DSM 21679]
gi|409025586|gb|AFU97870.1| GTP pyrophosphokinase [Simiduia agarivorans SA1 = DSM 21679]
Length = 748
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 94/137 (68%), Gaps = 10/137 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E ++ R K +YSI+ KMRRK++G +VYD RA+R++V P+++ CY++L I
Sbjct: 259 IEGEITGRAKHIYSIWRKMRRKNIGFSQVYDIRAVRILV---------PSVRDCYAVLGI 309
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW I EFDDYI +PK +GY+SLHTAV GP+ LEVQIRT MH+ AE G+ AHW
Sbjct: 310 VHSLWRNIPNEFDDYIASPKENGYRSLHTAVIGPEQKVLEVQIRTHGMHQDAEFGVCAHW 369
Query: 398 LYKETGNKLQSISSMDE 414
YK T +K +S + D+
Sbjct: 370 RYKGT-DKEESQNGYDQ 385
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 84/143 (58%), Gaps = 7/143 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN--QLLRRHRRINVNQG 69
++++A IL+ V + SL + + FG+ ++KL+ GV R++ I+ QL ++ G
Sbjct: 85 ESLIAAILYRAVREGKLSLDRVAKAFGNTISKLIEGVLRMAAISATQLDE-----SIALG 139
Query: 70 TLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
E+A ++R ML+ MVDD RV LIKLA+R +R + + + VA+E ++ L
Sbjct: 140 RESEEQAENVRKMLVAMVDDVRVALIKLAERTCAIRALKTATEERRQRVAKEIANVYAPL 199
Query: 130 ASRLGLWALKAELEDLCFAVLQP 152
A RLG+ +K ELEDL F L+P
Sbjct: 200 AHRLGIGHIKWELEDLSFRYLEP 222
>gi|320449341|ref|YP_004201437.1| GTP pyrophosphokinase [Thermus scotoductus SA-01]
gi|320149510|gb|ADW20888.1| GTP pyrophosphokinase [Thermus scotoductus SA-01]
Length = 667
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 110/182 (60%), Gaps = 14/182 (7%)
Query: 252 IALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARA 311
I ++VA EEAL ++ L+ + G+EVT R K LYSI+ KM R+ + ++YD A
Sbjct: 218 IIRKAMVALEEALRRDELLQAQ-LQGLEVT--GRPKHLYSIWKKMEREGKALEQIYDLLA 274
Query: 312 LRVVVGDKNG-TLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTA 367
+RV++ K T G A+ Q CY +L +VH LW PI G DYI PKP+GYQSLHT
Sbjct: 275 VRVILDPKPAPTEEGRALREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTT 334
Query: 368 VQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK-------ETGNKLQSISSMDESDIEAS 420
V +G LEVQIRT++MH AE+G+AAHWLYK E ++ + S+ E E S
Sbjct: 335 VIALEGLPLEVQIRTREMHRIAEYGIAAHWLYKEGLTDPEELKRRVSWLKSIQEWQQEFS 394
Query: 421 SS 422
SS
Sbjct: 395 SS 396
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 13/163 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV+AG+LHD ++D + +E FG V +LV G +++S + +L L
Sbjct: 67 DTVMAGLLHDTLEDCGVAPEELERRFGPAVRRLVEGETKVSKLYKL-----------ANL 115
Query: 72 GHEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
EE A DLR M + M +D R++++KLADRLHN+RT+ +PP K R +AQETL I+ L
Sbjct: 116 EGEEKRAEDLRQMFIAMAEDVRIIIVKLADRLHNLRTLEHMPPEKQRRIAQETLEIYAPL 175
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
A RLG+ LK ELEDL F L P+ + + + + R ++
Sbjct: 176 AHRLGMGQLKWELEDLSFRYLHPEAYHALLSRIQETQEAREQI 218
>gi|329894308|ref|ZP_08270178.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [gamma
proteobacterium IMCC3088]
gi|328923104|gb|EGG30427.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [gamma
proteobacterium IMCC3088]
Length = 739
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 93/137 (67%), Gaps = 11/137 (8%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K ++SI+ KM+RK +G +V+D RA+R++V P+++ CY+ L ++H L
Sbjct: 260 INGRAKHIFSIWKKMQRKGIGFSQVHDVRAIRILV---------PSVKDCYTTLGVIHGL 310
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W I EFDDYI NPKP+GY+SLHTAV GP+G LEVQ+RT +MH+ AE G+ AHW YK+
Sbjct: 311 WRTIPNEFDDYIANPKPNGYRSLHTAVIGPEGKVLEVQVRTNEMHDEAELGVCAHWRYKQ 370
Query: 402 TGNKLQSISSMDESDIE 418
+ S S+ E IE
Sbjct: 371 SDRA--SSGSVYEEKIE 385
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 93/176 (52%), Gaps = 10/176 (5%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V + AG+L+ V + S+ S+ EFG V LV GV +++ + + +
Sbjct: 82 VQALCAGLLYRAVREQRLSVESVRREFGQSVEALVVGVLKMADVADV-----QSFTAASV 136
Query: 71 LGH-EEAND-LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 128
LG + AND LR ML+ MVDD RV LIKLA+R +R + + R +A E ++
Sbjct: 137 LGQPQSANDNLRQMLVAMVDDVRVALIKLAERTCAIRVVKNDEQRRER-LAAEVSGLYVP 195
Query: 129 LASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 184
LA RLG+ LK ELEDL F QP +++++ L R+R Y RR++ V +
Sbjct: 196 LAHRLGIGQLKWELEDLAFRYTQPSVYKRIAKLLDGKRVERDR--YIRRVSQTVDA 249
>gi|422616769|ref|ZP_16685474.1| RelA/SpoT protein, partial [Pseudomonas syringae pv. japonica str.
M301072]
gi|330897095|gb|EGH28573.1| RelA/SpoT protein, partial [Pseudomonas syringae pv. japonica str.
M301072]
Length = 611
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRGVREGLIALPEVEQRFGAMVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|451812326|ref|YP_007448780.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium galatii
TCC219]
gi|451778228|gb|AGF49176.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium galatii
TCC219]
Length = 330
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 92/147 (62%), Gaps = 11/147 (7%)
Query: 258 VACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVG 317
+ E L K I Y G++ +S RLK +YSI++KM K++ ++YD ALRVVV
Sbjct: 187 IFIESTLSKIKSILNRY--GIKAEISGRLKHIYSIWNKMCFKNIDFSRLYDLSALRVVVD 244
Query: 318 DKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALE 377
D ++ CY +LDIVH+LW I EFDDYI PKP+GYQSLHT V D +E
Sbjct: 245 D---------VKTCYMVLDIVHKLWDHIPEEFDDYISRPKPNGYQSLHTVVIDKDNYLIE 295
Query: 378 VQIRTQKMHEYAEHGLAAHWLYKETGN 404
+QIRT MH +AE+GLA+HW YK+ N
Sbjct: 296 IQIRTCDMHNFAEYGLASHWFYKKFRN 322
>gi|423094042|ref|ZP_17081838.1| GTP pyrophosphokinase [Pseudomonas fluorescens Q2-87]
gi|397885448|gb|EJL01931.1| GTP pyrophosphokinase [Pseudomonas fluorescens Q2-87]
Length = 748
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L + + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIQLPVVSQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|289677067|ref|ZP_06497957.1| RelA/SpoT protein, partial [Pseudomonas syringae pv. syringae FF5]
Length = 402
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRGVREGLIALPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|378952324|ref|YP_005209812.1| RelA protein [Pseudomonas fluorescens F113]
gi|359762338|gb|AEV64417.1| RelA [Pseudomonas fluorescens F113]
Length = 748
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L + + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIQLPVVSQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|430761273|ref|YP_007217130.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430010897|gb|AGA33649.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 724
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 98/158 (62%), Gaps = 12/158 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + + ++ D RA RV+V D + CY++L
Sbjct: 234 GIQARVYGRPKHIYSIWRKMQKKQLALEELTDLRATRVIVDD---------LSACYTVLG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH W + EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT+ MHE+AE G+AAH
Sbjct: 285 IVHNQWPHLPREFDDYIANPKDNGYQSLHTAVVGPEGKVVEVQIRTRAMHEFAELGVAAH 344
Query: 397 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 434
W YKE G + +++ S L D DD N L+
Sbjct: 345 WRYKEGGREDLALARAINS---LRQLLESDGDDQNLLE 379
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+ ++FG+ VA+L VS L RR G E+A LR MLL MVDD R
Sbjct: 89 MSQQFGEVVARLAENVSELV--------RRRFEAPTGR--PEQAERLRRMLLAMVDDVRA 138
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VLIK A RL N+R + +AQETL + LA+RLG+ +LK E+EDL +L+P
Sbjct: 139 VLIKFAFRLQNLRLAVKQMEPGTKLLAQETLDVIAPLANRLGIGSLKWEMEDLSLRILEP 198
Query: 153 QIFRKMRADLASMWSPRNRVGYSRRITTIVSS 184
+ +R + L + + R R Y T + S
Sbjct: 199 EAYRAIANGLDA--NRRAREAYVETFTRTLES 228
>gi|104780553|ref|YP_607051.1| GTP pyrophosphokinase RelA [Pseudomonas entomophila L48]
gi|95109540|emb|CAK14241.1| putative GTP pyrophosphokinase RelA [Pseudomonas entomophila L48]
Length = 746
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEVRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 384 KMHEYAEHGLAAHWLYKETGNKLQS 408
MHE AE G+ AHW YK T K S
Sbjct: 353 SMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L I + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEIGQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|302059737|ref|ZP_07251278.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato K40]
Length = 661
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 169 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 219
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 220 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 279
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 280 WRYK--GTDVKSSSNHYEEKI 298
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 81/144 (56%), Gaps = 6/144 (4%)
Query: 16 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE- 74
A +++ V + L +E+ FG VAKL+ GV R++ I+ L + + LG +
Sbjct: 1 AAVMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VLGSQA 55
Query: 75 EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 134
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RLG
Sbjct: 56 QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLG 115
Query: 135 LWALKAELEDLCFAVLQPQIFRKM 158
+ +K ELEDL F L+P ++++
Sbjct: 116 IGHIKWELEDLSFRYLEPDQYKQI 139
>gi|440745105|ref|ZP_20924402.1| RelA/SpoT protein [Pseudomonas syringae BRIP39023]
gi|440373090|gb|ELQ09862.1| RelA/SpoT protein [Pseudomonas syringae BRIP39023]
Length = 747
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRGVREGLVALPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|330504040|ref|YP_004380909.1| (p)ppGpp synthetase I [Pseudomonas mendocina NK-01]
gi|328918326|gb|AEB59157.1| (p)ppGpp synthetase I [Pseudomonas mendocina NK-01]
Length = 747
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PEVRDCYTTLG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 85/147 (57%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA I++ V + +L ++ + FG VAKL+ GV R++ I+ + + V T
Sbjct: 83 DSLVAAIIYRGVREGKITLAAVHQRFGPVVAKLIEGVLRMAAISASINPRESVVVGSQT- 141
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +LR ML+ MVDD RV LIKLA+R +R + K + VA+E I+ LA
Sbjct: 142 ---QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKEADEEKRQRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|422590107|ref|ZP_16664765.1| GTP pyrophosphokinase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|422653534|ref|ZP_16716298.1| GTP pyrophosphokinase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330877091|gb|EGH11240.1| GTP pyrophosphokinase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330966581|gb|EGH66841.1| GTP pyrophosphokinase [Pseudomonas syringae pv. actinidiae str.
M302091]
Length = 747
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|344941876|ref|ZP_08781164.1| RelA/SpoT family protein [Methylobacter tundripaludum SV96]
gi|344263068|gb|EGW23339.1| RelA/SpoT family protein [Methylobacter tundripaludum SV96]
Length = 710
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 112/206 (54%), Gaps = 20/206 (9%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K +YSI+ KMRRK + I ++YD A+RV+V + + CY+ L
Sbjct: 227 GISAEIYGRPKHIYSIWKKMRRKQLDIDELYDLLAVRVIVDN---------LTACYATLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW I EFDDYI NPK +GYQSLHT + P+G+ +EVQIRTQ+MH++AE G+AAH
Sbjct: 278 MVHSLWQTIPKEFDDYIANPKENGYQSLHTVIIDPEGNRIEVQIRTQQMHDFAELGVAAH 337
Query: 397 WLYKETGNKLQSISS--------MDESDIEASSSLSKDTDDHNPLDTDLFQK--YSSLKM 446
W YKE G +I +DE+ E S D ++LF Y
Sbjct: 338 WSYKEGGKHDAAIEKNIASLRKLLDETSPERSRKEGSDEALSENFRSELFNDRVYVLTPA 397
Query: 447 GHPVIRVEGSNLL-AAVIIRVEKGGR 471
G + V+GS L A I E G R
Sbjct: 398 GKLIDLVKGSTPLDFAYAIHTEVGHR 423
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 8/153 (5%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ T++A IL D +I+E+FG+ VA LV V+ ++N+L + + T
Sbjct: 58 LKTILAAILSDPRLAHLNPKPNIKEQFGETVATLVNDVN---WLNKLT-----VYSLEMT 109
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ LR MLL M D R VLIKLA RL ++ + R +AQETL I+ +A
Sbjct: 110 DQPSQTETLRRMLLSMTQDVRAVLIKLAYRLQRLKVLPRESYELRRFIAQETLDIYAPIA 169
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
+R+G+ LK ELED+ F L+PQ +R++ L
Sbjct: 170 NRMGIHQLKWELEDMAFRYLKPQSYRRIAKSLT 202
>gi|443642861|ref|ZP_21126711.1| Bifunctional (p)ppGpp synthetase I / (p)ppGpp pyrophosphohydrolase
[Pseudomonas syringae pv. syringae B64]
gi|443282878|gb|ELS41883.1| Bifunctional (p)ppGpp synthetase I / (p)ppGpp pyrophosphohydrolase
[Pseudomonas syringae pv. syringae B64]
Length = 747
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRGVREGLIALPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|424068834|ref|ZP_17806283.1| GTP pyrophospho kinase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424073260|ref|ZP_17810678.1| GTP pyrophospho kinase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407996341|gb|EKG36818.1| GTP pyrophospho kinase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407996350|gb|EKG36826.1| GTP pyrophospho kinase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
Length = 747
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRGVREGLIALPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|429212426|ref|ZP_19203591.1| GTP pyrophosphokinase [Pseudomonas sp. M1]
gi|428156908|gb|EKX03456.1| GTP pyrophosphokinase [Pseudomonas sp. M1]
Length = 752
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 256 GIKADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV---------PEMRDCYTALG 306
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 307 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 366
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 367 WRYK--GTDVKSGSNHYEEKI 385
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+++VA +++ V + L +++ FG VAKL+ GV R++ I+ L + R ++ GT
Sbjct: 84 ESLVAAVIYRGVREGKVKLEEVQQRFGPVVAKLIEGVLRMAAISASL--NPRQSMVLGTQ 141
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 142 AQIE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRMRVAREVFDIYAPLAH 199
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 200 RLGIGHIKWELEDLSFRYLEPDQYKQI 226
>gi|146306766|ref|YP_001187231.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas mendocina ymp]
gi|421506221|ref|ZP_15953146.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas mendocina DLHK]
gi|145574967|gb|ABP84499.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas mendocina ymp]
gi|400343003|gb|EJO91388.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas mendocina DLHK]
Length = 747
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PEVRDCYTTLG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L ++ + FG VAKL+ GV R++ I+ + + V T
Sbjct: 83 DSLVAAVIYRGVREGKITLAAVHQRFGPVVAKLIEGVLRMAAISASINPRESVVVGSQT- 141
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +LR ML+ MVDD RV LIKLA+R +R + K + VA+E I+ LA
Sbjct: 142 ---QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKEADEEKRQRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P+ ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|422637401|ref|ZP_16700833.1| RelA/SpoT protein [Pseudomonas syringae Cit 7]
gi|330949797|gb|EGH50057.1| RelA/SpoT protein [Pseudomonas syringae Cit 7]
Length = 747
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRGVREGLVALPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|298157515|gb|EFH98596.1| GTP pyrophosphokinase / Guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 747
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRGVREGVIPLPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|440722555|ref|ZP_20902933.1| RelA/SpoT protein [Pseudomonas syringae BRIP34876]
gi|440729399|ref|ZP_20909579.1| RelA/SpoT protein [Pseudomonas syringae BRIP34881]
gi|440358722|gb|ELP96062.1| RelA/SpoT protein [Pseudomonas syringae BRIP34881]
gi|440361143|gb|ELP98385.1| RelA/SpoT protein [Pseudomonas syringae BRIP34876]
Length = 747
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRGVREGLIALPEVEQRFGAMVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|71733843|ref|YP_275858.1| GTP pyrophosphokinase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71554396|gb|AAZ33607.1| GTP pyrophosphokinase [Pseudomonas syringae pv. phaseolicola 1448A]
Length = 744
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 252 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 302
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 303 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 362
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 363 WRYK--GTDVKSGSNHYEEKI 381
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 80 DSLVAAVIYRGVREGVIPLPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VL 134
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 135 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 194
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 195 HRLGIGHIKWELEDLSFRYLEPDQYKQI 222
>gi|66046924|ref|YP_236765.1| RelA/SpoT protein [Pseudomonas syringae pv. syringae B728a]
gi|63257631|gb|AAY38727.1| RelA/SpoT protein [Pseudomonas syringae pv. syringae B728a]
Length = 747
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRGVREGLIALPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|289628370|ref|ZP_06461324.1| GTP pyrophosphokinase [Pseudomonas syringae pv. aesculi str. NCPPB
3681]
gi|289648124|ref|ZP_06479467.1| GTP pyrophosphokinase [Pseudomonas syringae pv. aesculi str. 2250]
gi|422581197|ref|ZP_16656340.1| GTP pyrophosphokinase [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330866047|gb|EGH00756.1| GTP pyrophosphokinase [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 747
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRGVREGVIPLPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|237798966|ref|ZP_04587427.1| GTP pyrophosphokinase, partial [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|237806202|ref|ZP_04592906.1| GTP pyrophosphokinase, partial [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331021820|gb|EGI01877.1| GTP pyrophosphokinase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331027315|gb|EGI07370.1| GTP pyrophosphokinase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 533
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRGVREGVIPLPEVEQRFGSTVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|422297689|ref|ZP_16385319.1| GTP pyrophospho kinase [Pseudomonas avellanae BPIC 631]
gi|407990823|gb|EKG32828.1| GTP pyrophospho kinase [Pseudomonas avellanae BPIC 631]
Length = 711
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 219 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 269
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 270 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 329
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 330 WRYK--GTDVKSGSNHYEEKI 348
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 47 DSLVAAVMYRGVREGVIPLPDVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VL 101
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 102 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 161
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 162 HRLGIGHIKWELEDLSFRYLEPDQYKQI 189
>gi|424845459|ref|ZP_18270070.1| (p)ppGpp synthetase, RelA/SpoT family [Jonquetella anthropi DSM
22815]
gi|363986897|gb|EHM13727.1| (p)ppGpp synthetase, RelA/SpoT family [Jonquetella anthropi DSM
22815]
Length = 762
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 87/135 (64%), Gaps = 9/135 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ R K YSI+ KM RK + I ++YD ALRV+V D + CYS+L
Sbjct: 272 GIKNSIKGRAKHFYSIYEKMNRKKLSIDQLYDLLALRVIVED---------VAQCYSVLG 322
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT MH AE+G+AAH
Sbjct: 323 VVHTIWKPIPGQFDDYIANPKNNMYQSLHTTVLGPSGEPLEVQIRTWAMHWRAEYGVAAH 382
Query: 397 WLYKETGNKLQSISS 411
W YKE + + + S
Sbjct: 383 WRYKEGDSHVDDLDS 397
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 88/162 (54%), Gaps = 12/162 (7%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V T+ A +LHDV++D + + E FG+ V LV GV++L + T
Sbjct: 107 VATLQAALLHDVLEDTECTAEQMRERFGEVVTTLVDGVTKLG------------KLPFKT 154
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A +LR M L M D RVVLIKLADR HNMR++ A+ K A+ETL I+ LA
Sbjct: 155 FEDYQAENLRKMFLVMAKDIRVVLIKLADRTHNMRSLGAMRRDKQIRTAKETLEIYAPLA 214
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
RLG++ +K LEDL F P+++ ++++ + R V
Sbjct: 215 HRLGIYQMKRTLEDLAFKYYDPEMYYEIKSKVKKRLPEREAV 256
>gi|257485907|ref|ZP_05639948.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|416017928|ref|ZP_11564965.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. B076]
gi|416028609|ref|ZP_11571554.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. race
4]
gi|422404211|ref|ZP_16481265.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. race
4]
gi|422596420|ref|ZP_16670702.1| GTP pyrophosphokinase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422605745|ref|ZP_16677758.1| GTP pyrophosphokinase [Pseudomonas syringae pv. mori str. 301020]
gi|422684161|ref|ZP_16742412.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|320323401|gb|EFW79489.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. B076]
gi|320327598|gb|EFW83610.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. race
4]
gi|330876402|gb|EGH10551.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. race
4]
gi|330889400|gb|EGH22061.1| GTP pyrophosphokinase [Pseudomonas syringae pv. mori str. 301020]
gi|330986719|gb|EGH84822.1| GTP pyrophosphokinase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331013486|gb|EGH93542.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
Length = 747
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRGVREGVIPLPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|260655712|ref|ZP_05861185.1| GTP diphosphokinase [Jonquetella anthropi E3_33 E1]
gi|260629629|gb|EEX47823.1| GTP diphosphokinase [Jonquetella anthropi E3_33 E1]
Length = 762
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 87/135 (64%), Gaps = 9/135 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ R K YSI+ KM RK + I ++YD ALRV+V D + CYS+L
Sbjct: 272 GIKNSIKGRAKHFYSIYEKMNRKKLSIDQLYDLLALRVIVED---------VAQCYSVLG 322
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT MH AE+G+AAH
Sbjct: 323 VVHTIWKPIPGQFDDYIANPKNNMYQSLHTTVLGPSGEPLEVQIRTWAMHWRAEYGVAAH 382
Query: 397 WLYKETGNKLQSISS 411
W YKE + + + S
Sbjct: 383 WRYKEGDSHVDDLDS 397
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 88/162 (54%), Gaps = 12/162 (7%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V T+ A +LHDV++D + + E FG+ V LV GV++L + T
Sbjct: 107 VATLQAALLHDVLEDTECTAEQMRERFGEVVTTLVDGVTKLG------------KLPFKT 154
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A +LR M L M D RVVLIKLADR HNMR++ A+ K A+ETL I+ LA
Sbjct: 155 FEDYQAENLRKMFLVMAKDIRVVLIKLADRAHNMRSLGAMRRDKQIRTAKETLEIYAPLA 214
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
RLG++ +K LEDL F P+++ ++++ + R V
Sbjct: 215 HRLGIYQMKRTLEDLAFKYYDPEMYYEIKSKVKKRLPEREAV 256
>gi|239815569|ref|YP_002944479.1| (p)ppGpp synthetase I SpoT/RelA [Variovorax paradoxus S110]
gi|239802146|gb|ACS19213.1| (p)ppGpp synthetase I, SpoT/RelA [Variovorax paradoxus S110]
Length = 747
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 94/146 (64%), Gaps = 18/146 (12%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
LE+EL G+ T+ R K++YSI KMR K + +V+D ALRVVV
Sbjct: 247 LERELQAE-----GVRATVQGRPKNIYSIVKKMRGKSLDFAQVFDILALRVVV------- 294
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ----GPDGSALEVQ 379
P ++ CY+ L VH ++PID EFDDYI PKP+GYQSLHT V+ G G +E+Q
Sbjct: 295 --PDVKDCYAALAWVHSHFLPIDEEFDDYIARPKPNGYQSLHTVVREMVDGKPGKPIEIQ 352
Query: 380 IRTQKMHEYAEHGLAAHWLYKETGNK 405
IRT++MH++AEHG+AAHW YKE G+K
Sbjct: 353 IRTEEMHDHAEHGVAAHWAYKEAGHK 378
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 6/136 (4%)
Query: 26 ACESLGSIEEE----FGDEVAKLVAGVSRLSYINQLLRRHRR-INVNQGTLGHEEANDLR 80
AC+ L +E FGD A L ++L + + R + ++ +G G + N +R
Sbjct: 89 ACQHLNRPQEVIAKVFGDNFAALAVETTKLVRVQEQARSASQGHHLAEGAAGAQTEN-VR 147
Query: 81 VMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKA 140
MLL D RVV+++LA RL +R A +VA+E+L ++ LA+RLG+W +K
Sbjct: 148 KMLLAFSRDLRVVMLRLASRLQTLRHAAASKQPAPESVARESLQVFAPLANRLGIWQVKW 207
Query: 141 ELEDLCFAVLQPQIFR 156
E+EDL F L+P+ ++
Sbjct: 208 EIEDLSFRFLEPETYK 223
>gi|429332116|ref|ZP_19212848.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida CSV86]
gi|428763166|gb|EKX85349.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida CSV86]
Length = 746
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 98/154 (63%), Gaps = 16/154 (10%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 384 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 417
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 353 AMHEEAELGVCAHWRYK--GTDVKSGSNHYEEKI 384
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA I++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAIIYRAVREGKATLAEVAQRFGPVVSKLIDGVLRMAAISASLNPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKGADDEKRHRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|402698898|ref|ZP_10846877.1| GTP pyrophosphokinase [Pseudomonas fragi A22]
Length = 750
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQS 408
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 88/147 (59%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA IL+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAILYRCVREGQVQLPAVSQRFGPVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + P K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKNAPDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P+ ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|170720403|ref|YP_001748091.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida W619]
gi|169758406|gb|ACA71722.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida W619]
Length = 746
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEVRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 384 KMHEYAEHGLAAHWLYKETGNKLQS 408
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVGQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|398845089|ref|ZP_10602135.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM84]
gi|398253944|gb|EJN39055.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM84]
Length = 746
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEVRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 384 KMHEYAEHGLAAHWLYKETGNKLQS 408
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRSVREGKVTLAEVGQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|423692851|ref|ZP_17667371.1| GTP diphosphokinase [Pseudomonas fluorescens SS101]
gi|387998684|gb|EIK60013.1| GTP diphosphokinase [Pseudomonas fluorescens SS101]
Length = 747
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQS 408
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D+++A +L+ V + +L + + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIALPLVSQRFGAVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|312962345|ref|ZP_07776836.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Pseudomonas
fluorescens WH6]
gi|311283272|gb|EFQ61862.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Pseudomonas
fluorescens WH6]
Length = 762
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 270 GVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 320
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 321 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 380
Query: 397 WLYKETGNKLQS 408
W YK T K S
Sbjct: 381 WRYKGTDVKAGS 392
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 98 DSLIAAVLYRGVREGHIPLATVGQRFGSVVAKLIDGVLRMAAISASL--SPRQSLVLGTQ 155
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 156 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 213
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 214 RLGIGHIKWELEDLSFRYLEPDQYKQI 240
>gi|409427770|ref|ZP_11262262.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas sp. HYS]
Length = 746
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 97/154 (62%), Gaps = 16/154 (10%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 384 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 417
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 353 AMHEEAELGVCAHWRYK--GTDVKSSSNHYEEKI 384
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + +L + + FG V+KL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRAVREGKVTLAEVGQRFGPVVSKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKGADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|387894956|ref|YP_006325253.1| GTP pyrophosphokinase [Pseudomonas fluorescens A506]
gi|388467232|ref|ZP_10141442.1| GTP diphosphokinase [Pseudomonas synxantha BG33R]
gi|387163946|gb|AFJ59145.1| GTP pyrophosphokinase [Pseudomonas fluorescens A506]
gi|388010812|gb|EIK71999.1| GTP diphosphokinase [Pseudomonas synxantha BG33R]
Length = 747
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQS 408
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D+++A +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLIAAVLYRGVREGHIPLATVGQRFGSVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|357418302|ref|YP_004931322.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Pseudoxanthomonas spadix BD-a59]
gi|355335880|gb|AER57281.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Pseudoxanthomonas spadix BD-a59]
Length = 712
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 83/123 (67%), Gaps = 9/123 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K +YSI+ KM+RK V + +++D RA+R+ V D + CY+ L +VH L
Sbjct: 232 VSGRPKHIYSIWKKMQRKQVALDELFDLRAVRITVSD---------VAQCYAALGVVHAL 282
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI EFDDYI PK +GY+SLHTAV GP G ALEVQIRT +MH AE G+AAHW YKE
Sbjct: 283 WTPIPSEFDDYIARPKANGYRSLHTAVVGPQGRALEVQIRTYEMHAQAELGVAAHWRYKE 342
Query: 402 TGN 404
G
Sbjct: 343 GGG 345
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 64 INVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETL 123
++ QG+ + E LR +LL +V D RVV I LA +L MR ALP + RA+A T
Sbjct: 105 LHAEQGSSRNTEG--LRRLLLAIVHDLRVVPILLARQLARMRAASALPEDQRRALALLTR 162
Query: 124 LIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 183
I LA+RLG+W LK ELEDL F LQP +R + A L NR G R I + +
Sbjct: 163 DIHAPLANRLGIWQLKWELEDLAFRYLQPDTYRAIAAQLDD-----NRAGRERYIEKVKA 217
Query: 184 S 184
+
Sbjct: 218 T 218
>gi|388543450|ref|ZP_10146741.1| RelA protein [Pseudomonas sp. M47T1]
gi|388278762|gb|EIK98333.1| RelA protein [Pseudomonas sp. M47T1]
Length = 748
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 98/154 (63%), Gaps = 16/154 (10%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 384 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 417
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 353 AMHEEAELGVCAHWRYK--GTDVKSGSNHYEEKI 384
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DT+VA +++ V + +L + + FG VAKL+ GV R++ I+ L R ++ G+
Sbjct: 83 DTLVAAVIYRAVREGRVTLADVGQRFGALVAKLIDGVLRMAAISASL--SPRQSLVLGSQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|381401703|ref|ZP_09926596.1| GTP pyrophosphokinase [Kingella kingae PYKK081]
gi|380833262|gb|EIC13137.1| GTP pyrophosphokinase [Kingella kingae PYKK081]
Length = 725
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ R K +YSI+ KM +K + +YD RA+RV+V ++ CY+ L
Sbjct: 241 GIQCDVAGRPKHIYSIYKKMVKKKLDFDGLYDIRAVRVLVN---------SVSECYTTLG 291
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT +MHE+ E G+AAH
Sbjct: 292 IVHSLWQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGIEVQIRTHEMHEFNEFGVAAH 351
Query: 397 WLYKETG 403
W YKE G
Sbjct: 352 WRYKEGG 358
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 10/151 (6%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+ V A +L D+ + + E+ G VA LVAG+ + + + V+
Sbjct: 67 EAVAATLLTDISTYCTDWKTQVSEQCGQAVATLVAGIDEVQKLTHFAK------VDALAT 120
Query: 72 GHEEAND---LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWC 127
E AN +R MLL MV D RVVLIKLA R +M+ + P + + RA+A+ETL I+
Sbjct: 121 PEERANQAETMRKMLLAMVSDIRVVLIKLALRTRSMQYLSQTPDSPQKRALAKETLDIFA 180
Query: 128 SLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W LK +LEDL F P+ ++++
Sbjct: 181 PLANRLGVWQLKWQLEDLGFRHYNPEEYKRI 211
>gi|350561728|ref|ZP_08930566.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349780760|gb|EGZ35078.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 724
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 98/158 (62%), Gaps = 12/158 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + + ++ D RA RV+V D + CY++L
Sbjct: 234 GVQARVYGRPKHIYSIWRKMQKKQLALEELTDLRATRVIVDD---------LSACYTVLG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH W + EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT+ MHE+AE G+AAH
Sbjct: 285 IVHNQWPHLPREFDDYIANPKDNGYQSLHTAVIGPEGKVVEVQIRTRAMHEFAELGVAAH 344
Query: 397 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 434
W YKE G + +++ S L D DD N L+
Sbjct: 345 WRYKEGGREDLALARAINS---LRQLLESDGDDQNLLE 379
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 70/126 (55%), Gaps = 10/126 (7%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+ ++FG+ VA+L VS L RR G E+A LR MLL MVDD R
Sbjct: 89 MSQQFGEVVARLTENVSELV--------RRRFESPTGR--PEQAERLRRMLLAMVDDVRA 138
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
+LIK A RL N+R A+ +AQETL + LA+RLG+ +LK E+EDL +L+P
Sbjct: 139 LLIKFAFRLQNLRLAVKQMEPNAKLLAQETLDVIAPLANRLGIGSLKWEMEDLSLRILEP 198
Query: 153 QIFRKM 158
+R +
Sbjct: 199 DAYRAI 204
>gi|333374620|ref|ZP_08466460.1| GTP diphosphokinase [Kingella kingae ATCC 23330]
gi|332975258|gb|EGK12158.1| GTP diphosphokinase [Kingella kingae ATCC 23330]
Length = 725
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ R K +YSI+ KM +K + +YD RA+RV+V ++ CY+ L
Sbjct: 241 GIQCDVAGRPKHIYSIYKKMVKKKLDFDGLYDIRAVRVLVN---------SVSECYTTLG 291
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT +MHE+ E G+AAH
Sbjct: 292 IVHSLWQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGIEVQIRTHEMHEFNEFGVAAH 351
Query: 397 WLYKETG 403
W YKE G
Sbjct: 352 WRYKEGG 358
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 10/151 (6%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+ V A +L D+ + + E+ G VA LVAG+ + + + V+
Sbjct: 67 EAVAATLLTDISTYCTDWKTQVSEQCGQAVATLVAGIDEVQKLTHFAK------VDALAT 120
Query: 72 GHEEAND---LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWC 127
E AN +R MLL MV D RVVLIKLA R +M+ + P + + R +A+ETL I+
Sbjct: 121 PEERANQAETMRKMLLAMVSDIRVVLIKLALRTRSMQYLSQTPDSPQKRVLAKETLDIFA 180
Query: 128 SLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W LK +LEDL F P+ ++++
Sbjct: 181 PLANRLGVWQLKWQLEDLGFRHYNPEEYKRI 211
>gi|291612747|ref|YP_003522904.1| RelA/SpoT family protein [Sideroxydans lithotrophicus ES-1]
gi|291582859|gb|ADE10517.1| RelA/SpoT family protein [Sideroxydans lithotrophicus ES-1]
Length = 659
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 92/138 (66%), Gaps = 12/138 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ R K +YSI +KM+RK++ ++YD RA+R++V I+ CY+ L
Sbjct: 254 GIKAEVTGRPKHIYSIINKMKRKNLDFDQLYDVRAVRILVD---------TIEQCYAALS 304
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI EFDDYI PKP+GY+SLHTAV GP +EVQIRTQ+MH +E G+AAH
Sbjct: 305 IVHELWTPIQKEFDDYIARPKPNGYKSLHTAVLGPRDLPVEVQIRTQQMHHDSELGVAAH 364
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE +S S +DE
Sbjct: 365 WRYKENR---KSESGLDE 379
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 113/215 (52%), Gaps = 7/215 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A LH + D + +EE FG + +V G+SR+ ++ Q R +
Sbjct: 79 ETIAATALHAIPDFLDDWKSVLEERFGHNIPLMVDGISRMEHVRQF-SEIRTAAADDKEA 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++ LR MLL MV+D RVVLIKLA+R +RT+ PP + + +AQET I+ LA+
Sbjct: 138 AAQQLEGLRQMLLAMVEDIRVVLIKLAERTQTLRTLPGAPPEQQKLIAQETQSIFAPLAN 197
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+W +K ELEDL L+P +++K +A + R R+ R I I+S +
Sbjct: 198 RLGVWQIKWELEDLSTRYLEPGLYKK----IAKLLDER-RIDRERYIADIISHLQRELAQ 252
Query: 192 ASDDESFTTFDEHVLSMKDLLE-AVVPFDILSDRR 225
A T +H+ S+ + ++ + FD L D R
Sbjct: 253 AGIKAEVTGRPKHIYSIINKMKRKNLDFDQLYDVR 287
>gi|152980252|ref|YP_001353176.1| GTP pyrophosphokinase [Janthinobacterium sp. Marseille]
gi|151280329|gb|ABR88739.1| GTP pyrophosphokinase [Janthinobacterium sp. Marseille]
Length = 759
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 87/138 (63%), Gaps = 9/138 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K ++SI+SK+R K + +YD RA RV+V D ++ CY++L
Sbjct: 255 GIKAEVFGRPKHIFSIWSKLRGKAIEFSDLYDVRAFRVIVDD---------VKTCYTVLG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H +W PI EFDDYI PK +GYQSLHT V DG LEVQ+RT MH++AE+G+AAH
Sbjct: 306 IIHNIWAPIPEEFDDYISRPKSNGYQSLHTIVIAEDGRPLEVQVRTNDMHDFAEYGVAAH 365
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE G S DE
Sbjct: 366 WRYKEAGGSNFSGQKYDE 383
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 26/166 (15%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DT +A +L ++ + IEE FG EV LV GV QL+R H V
Sbjct: 75 DTRIAALLFELATIDPTAADKIEERFGKEVNNLVLGV------RQLMRLHEVTFVQ---- 124
Query: 72 GHEEAND-------------LRVMLLGMVDDPRVVLIKLADRLHNMRTIY--ALPPAKAR 116
HE A +R MLL M D RVVL++L R+ +R + +++
Sbjct: 125 -HEAARSKNAAQEAAAQLEVVRKMLLAMASDMRVVLVRLGTRVTTLRYFADNKVQNERSK 183
Query: 117 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
A+ET ++ LA+RLG+W LK ELEDL F LQP+ ++++ + L
Sbjct: 184 QYARETFDLYAPLANRLGVWQLKWELEDLSFRFLQPEAYKRIASQL 229
>gi|302185507|ref|ZP_07262180.1| RelA/SpoT protein [Pseudomonas syringae pv. syringae 642]
Length = 599
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 107 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 157
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 158 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 217
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 218 WRYK--GTDVKSGSNHYEEKI 236
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 82 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 141
ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA RLG+ +K E
Sbjct: 1 MLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRLGIGHIKWE 60
Query: 142 LEDLCFAVLQPQIFRKM 158
LEDL F L+P ++++
Sbjct: 61 LEDLSFRYLEPDQYKQI 77
>gi|351729669|ref|ZP_08947360.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax radicis N35]
Length = 737
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ ++ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 249 ISASVQGRPKHIYSIVKKMRGKSLNFDQVFDIRALRVVV---------PTVKDCYAALSW 299
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + PI EFDDYI PKP+GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAHW
Sbjct: 300 VHEQFKPIVEEFDDYIAKPKPNGYQSLHTIVRDDHGKPIEIQIRTQAMHDHAEHGVAAHW 359
Query: 398 LYKETGNK-LQSISSMDESD 416
YKE G+K +S+ E D
Sbjct: 360 AYKEAGSKGYAGVSATGEYD 379
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 19/142 (13%)
Query: 26 ACESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE-----A 76
AC L EE FG A L ++L + Q R T H E
Sbjct: 87 ACIHLNKPEEVIAKAFGANFAALAVETTKLMRVQQQAR----------TAEHLEDPAVQT 136
Query: 77 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 136
++R MLL D RVV+++LA RL +R A + ++A+E+L ++ LA+RLG+W
Sbjct: 137 ENVRKMLLAFSRDLRVVMLRLASRLQTLRFHAASKRPVSPSLARESLQVFAPLANRLGIW 196
Query: 137 ALKAELEDLCFAVLQPQIFRKM 158
+K ELEDL F L+P ++++
Sbjct: 197 QVKWELEDLSFRFLEPDTYKEV 218
>gi|302670706|ref|YP_003830666.1| RelA/SpoT family protein [Butyrivibrio proteoclasticus B316]
gi|302395179|gb|ADL34084.1| RelA/SpoT family protein [Butyrivibrio proteoclasticus B316]
Length = 760
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 113/398 (28%), Positives = 184/398 (46%), Gaps = 112/398 (28%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ AG+LHDVV+D + I+E FG +VA LV GV++L+ + QL + Q +
Sbjct: 83 ETIAAGLLHDVVEDTICTKEEIQESFGADVALLVDGVTKLTAL-QLSTDNTNKTQEQIDM 141
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A +LR M L A+A++ +I LA
Sbjct: 142 ---QAQNLRKMFL--------------------------------AMAKDIRVILIKLAD 166
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP-RNRVGYSRRITTIVSSPPLDER 190
RL A + P+ +++ + ++SP R+G SR +
Sbjct: 167 RLHNMR--------TLAHMPPEKQQRIAQETLDIYSPIAGRLGISRI------------K 206
Query: 191 TASDDESFTTFDEHVLSMKDLLEAVVPFDILSD----RRKRTKFLHDLAKSSEAQKKAKV 246
DD LS+K L+ V +D++ + +R K++ D+ ++
Sbjct: 207 VELDD----------LSLK-YLKPDVYYDLVDKVSIRKSEREKYVEDICEN--------- 246
Query: 247 VQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKV 306
V+DA I T+ G+E ++ R+K +SI+ KMR ++ + ++
Sbjct: 247 VRDA-------------------IKTA---GIEGEVNGRVKHFFSIYKKMRNQNKTLDQI 284
Query: 307 YDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHT 366
YD A+R++V ++ CY+ L ++H ++ PI G F DYI PKP+ YQSLHT
Sbjct: 285 YDLFAIRIIVA---------TVKDCYAALGVIHEMYKPIPGRFKDYIAMPKPNMYQSLHT 335
Query: 367 AVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+ G G E+QIRT MH+ AE+G+AAHW YKET +
Sbjct: 336 TLIGQTGQPFEIQIRTYDMHKAAEYGIAAHWKYKETSD 373
>gi|359779979|ref|ZP_09283206.1| GTP pyrophosphokinase [Pseudomonas psychrotolerans L19]
gi|359372595|gb|EHK73159.1| GTP pyrophosphokinase [Pseudomonas psychrotolerans L19]
Length = 746
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKSDISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPREFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSASNHYEEKI 384
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 87/147 (59%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D+++A I++ V + +L S E FG VAKL+ GV R++ I++ L + + + T
Sbjct: 83 DSLIAAIVYRAVREGKATLESAAEHFGPVVAKLIEGVLRMAAISESLNPRKSMVLGSQT- 141
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ ++LR ML+ MVDD RV LIKLA+R +R + + VA+E I+ LA
Sbjct: 142 ---QVDNLRRMLVAMVDDVRVALIKLAERTCAIRAVKNATEERRNRVAREVADIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+PQ ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPQQYKQI 225
>gi|418532189|ref|ZP_13098098.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni ATCC
11996]
gi|371450984|gb|EHN64027.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni ATCC
11996]
Length = 743
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ ++ R K +YSI KMR K + +++D RA+RV+V P ++ CY+ L
Sbjct: 256 ISASVQGRPKHIYSIVKKMRGKSLSFDQLFDIRAMRVIV---------PTVKDCYAALSW 306
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + P++ EFDDYI PKP+GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAHW
Sbjct: 307 VHEQFTPLEKEFDDYIAKPKPNGYQSLHTVVRDETGRTIEIQIRTQAMHDHAEHGVAAHW 366
Query: 398 LYKETGNK-LQSISSMDESD 416
YKE G K +S+ E D
Sbjct: 367 AYKEAGTKGYAGVSASSEYD 386
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
I + FGD A L +L + Q R + + + + N +R MLLG D RV
Sbjct: 101 IAKAFGDNFATLAVETIKLIRVQQQAREAELSSQHVDGVATQTEN-VRKMLLGFSRDLRV 159
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL++LA RL +R A + ++A+E L ++ LA+RLG+W +K ELEDL F L+P
Sbjct: 160 VLLRLASRLQTLRYYAAEKSPVSPSIAREALYVFAPLANRLGIWQIKWELEDLAFRFLEP 219
Query: 153 QIFRKM 158
+R++
Sbjct: 220 DTYRQI 225
>gi|264678112|ref|YP_003278019.1| (p)ppGpp synthetase I SpoT/RelA [Comamonas testosteroni CNB-2]
gi|299533684|ref|ZP_07047058.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni S44]
gi|262208625|gb|ACY32723.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni CNB-2]
gi|298718406|gb|EFI59389.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni S44]
Length = 743
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ ++ R K +YSI KMR K + +++D RA+RV+V P ++ CY+ L
Sbjct: 256 ISASVQGRPKHIYSIVKKMRGKSLSFDQLFDIRAMRVIV---------PTVKDCYAALSW 306
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + P++ EFDDYI PKP+GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAHW
Sbjct: 307 VHEQFTPLEKEFDDYIAKPKPNGYQSLHTVVRDETGRTIEIQIRTQAMHDHAEHGVAAHW 366
Query: 398 LYKETGNK-LQSISSMDESD 416
YKE G K +S+ E D
Sbjct: 367 AYKEAGTKGYAGVSASSEYD 386
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
I + FGD A L +L + Q R + + + + N +R MLLG D RV
Sbjct: 101 IAKAFGDNFATLAVETIKLIRVQQQARDAELSSQHVDGVATQTEN-VRKMLLGFSRDLRV 159
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL++LA RL +R A + ++A+E L ++ LA+RLG+W +K ELEDL F L+P
Sbjct: 160 VLLRLASRLQTLRYYAAEKSPVSPSIAREALYVFAPLANRLGIWQIKWELEDLAFRFLEP 219
Query: 153 QIFRKM 158
+R++
Sbjct: 220 DTYRQI 225
>gi|221067473|ref|ZP_03543578.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni KF-1]
gi|220712496|gb|EED67864.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni KF-1]
Length = 743
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ ++ R K +YSI KMR K + +++D RA+RV+V P ++ CY+ L
Sbjct: 256 ISASVQGRPKHIYSIVKKMRGKSLSFDQLFDIRAMRVIV---------PTVKDCYAALSW 306
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + P++ EFDDYI PKP+GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAHW
Sbjct: 307 VHEQFTPLEKEFDDYIAKPKPNGYQSLHTVVRDETGRTIEIQIRTQAMHDHAEHGVAAHW 366
Query: 398 LYKETGNK-LQSISSMDESD 416
YKE G K +S+ E D
Sbjct: 367 AYKEAGTKGYAGVSASSEYD 386
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
I + FGD A L +L + Q R + + + + N +R MLLG D RV
Sbjct: 101 IAKAFGDNFATLAVETIKLIRVQQQARDAELSSQHVDGVATQTEN-VRKMLLGFSRDLRV 159
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL++LA RL +R A + ++A+E L ++ LA+RLG+W +K ELEDL F L+P
Sbjct: 160 VLLRLASRLQTLRYYAAEKSPVSPSIAREALYVFAPLANRLGIWQIKWELEDLAFRFLEP 219
Query: 153 QIFRKM 158
+R++
Sbjct: 220 DTYRQI 225
>gi|424924370|ref|ZP_18347731.1| (p)ppGpp synthetase [Pseudomonas fluorescens R124]
gi|404305530|gb|EJZ59492.1| (p)ppGpp synthetase [Pseudomonas fluorescens R124]
Length = 747
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIELAAVSQRFGPVVAKLIDGVQRMAAISASL--SPRQSMVMGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|398850507|ref|ZP_10607212.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM80]
gi|398248721|gb|EJN34123.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM80]
Length = 747
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L +I + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIELAAIGQRFGPVVAKLIDGVQRMAAISASL--SPRQSMVMGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|398970197|ref|ZP_10683249.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM30]
gi|398140908|gb|EJM29854.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM30]
Length = 747
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIELAAVGQRFGPVVAKLIDGVQRMAAISASL--SPRQSMVMGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|398889275|ref|ZP_10643151.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM55]
gi|398189719|gb|EJM76986.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM55]
Length = 747
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 9/197 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA IL+ V + L ++ + FG VAKL+ GV R++ I+ L + + + GT
Sbjct: 83 DSLVAAILYRGVREGQIKLPAVSQRFGPVVAKLIDGVQRMAAISDSLSPRKSLVL--GTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ +K ELEDL F L+P +++ +A + R R+ R I+ ++S + +
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFISDVMSQLKNELQA 253
Query: 192 ASDDESFTTFDEHVLSM 208
D + +H+ S+
Sbjct: 254 TGVDADISGRAKHIYSI 270
>gi|398867522|ref|ZP_10622978.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM78]
gi|398236591|gb|EJN22368.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM78]
Length = 747
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 9/197 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIPLPAVSQRFGPVVAKLIDGVQRMAAISDSL--SPRKSMVMGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ +K ELEDL F L+P +++ +A + R R+ R I+ ++S + +
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFISDVMSQLKNELQA 253
Query: 192 ASDDESFTTFDEHVLSM 208
D + +H+ S+
Sbjct: 254 TGVDADISGRAKHIYSI 270
>gi|365093453|ref|ZP_09330518.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax sp. NO-1]
gi|363414333|gb|EHL21483.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax sp. NO-1]
Length = 737
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ ++ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 249 ISASVQGRPKHIYSIVKKMRGKSLNFDQVFDIRALRVVV---------PNVKDCYAALSW 299
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + PI EFDDYI PKP+GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAHW
Sbjct: 300 VHEQFKPIVEEFDDYIAKPKPNGYQSLHTIVRDDHGKPIEIQIRTQAMHDHAEHGVAAHW 359
Query: 398 LYKETGNK-LQSISSMDESD 416
YKE G+K +S+ E D
Sbjct: 360 AYKEAGSKGYAGVSAAGEYD 379
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 9/137 (6%)
Query: 26 ACESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 81
AC L EE FG+ A L ++L + Q R ++ + ++R
Sbjct: 87 ACIHLNKPEEVIAKAFGENFAALAVETTKLMRVQQQARGAEHLDDPA-----VQTENVRK 141
Query: 82 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 141
MLL D RVV+++LA RL +R A A ++A+E+L ++ LA+RLG+W +K E
Sbjct: 142 MLLAFSRDLRVVMLRLASRLQTLRFHAASKLPVAPSLARESLQVFAPLANRLGIWQVKWE 201
Query: 142 LEDLCFAVLQPQIFRKM 158
LEDL F L+P ++++
Sbjct: 202 LEDLSFRFLEPDTYKEV 218
>gi|37958841|gb|AAP51105.1| putative pyrophosphokinase [uncultured bacterium]
Length = 865
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 89/141 (63%), Gaps = 10/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K LYSI+ KM+ K++ I +V+D RALRV+V D I CY+ L
Sbjct: 360 GLNAQVQGRPKHLYSIWKKMQGKNLSIDRVFDVRALRVIVDD---------IPSCYAALS 410
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
H LW P+ EF DYI PKP+GYQSLHT V G D +E+QIR+Q MHE+A+ G+AAH
Sbjct: 411 RAHELWRPMPDEFSDYIARPKPNGYQSLHTVVLGDDDKPIEIQIRSQAMHEHADSGVAAH 470
Query: 397 WLYKETGNK-LQSISSMDESD 416
W YKE G K + ++ ES+
Sbjct: 471 WAYKEAGAKGYAGVQTVGESE 491
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
I FG + A LVA +L I Q R + G L ++ +R MLL D RV
Sbjct: 206 IGRAFGADAAALVAHTRKLVQI-QRNARDALGDEAYGPLRADQVERIRKMLLAFSRDLRV 264
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL++LA RL +R +A+A+E++ ++ LASRLG+ +K E+EDL F L P
Sbjct: 265 VLMRLASRLQTLRHYAETKLPCPKALARESMQVFAPLASRLGIGQIKWEMEDLSFRFLMP 324
Query: 153 QIFRKM 158
+ + +
Sbjct: 325 EAYHSI 330
>gi|398873055|ref|ZP_10628321.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM74]
gi|398200671|gb|EJM87580.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM74]
Length = 747
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 9/197 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA IL+ V + L ++ + FG V+KL+ GV R++ I+ L + + + GT
Sbjct: 83 DSLVAAILYRGVREGQIKLPAVSQRFGPVVSKLIDGVQRMAAISDSLSPRKSLVL--GTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ +K ELEDL F L+P +++ +A + R R+ R I+ ++S + +
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFISDVMSQLKNELQA 253
Query: 192 ASDDESFTTFDEHVLSM 208
D + +H+ S+
Sbjct: 254 TGVDADISGRAKHIYSI 270
>gi|398879075|ref|ZP_10634177.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM67]
gi|398884173|ref|ZP_10639114.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM60]
gi|398195242|gb|EJM82292.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM60]
gi|398197436|gb|EJM84415.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM67]
Length = 747
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 9/197 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIQLPAVSQRFGPVVAKLIDGVQRMAAISDSL--SPRKSMVMGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ +K ELEDL F L+P +++ +A + R R+ R I +++ ++ +
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFIADVMNQLKVELQA 253
Query: 192 ASDDESFTTFDEHVLSM 208
D + +H+ S+
Sbjct: 254 TGVDADISGRAKHIYSI 270
>gi|398991852|ref|ZP_10694940.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM24]
gi|399015483|ref|ZP_10717753.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM16]
gi|398108446|gb|EJL98407.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM16]
gi|398136809|gb|EJM25888.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM24]
Length = 747
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIELAAVGQRFGPVVAKLIDGVQRMAAISASL--SPRQSMVMGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|399001092|ref|ZP_10703811.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM18]
gi|398128549|gb|EJM17936.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM18]
Length = 747
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIQLPAVSQRFGPLVAKLIDGVQRMAAISDSL--SPRKSMVMGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|426411003|ref|YP_007031102.1| GTP diphosphokinase [Pseudomonas sp. UW4]
gi|426269220|gb|AFY21297.1| GTP diphosphokinase [Pseudomonas sp. UW4]
Length = 747
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 9/197 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA IL+ V + L ++ + FG VAKL+ GV R++ I+ L + + + GT
Sbjct: 83 DSLVAAILYRGVREGQIKLPAVSQRFGPVVAKLIDGVLRMAAISDSLSPRKSLVL--GTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ +K ELEDL F L+P +++ +A + R R+ R I+ ++S + +
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFISDVMSQLKNELQA 253
Query: 192 ASDDESFTTFDEHVLSM 208
D + +H+ S+
Sbjct: 254 TGVDADISGRAKHIYSI 270
>gi|398914094|ref|ZP_10656796.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM49]
gi|398179113|gb|EJM66734.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM49]
Length = 747
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 9/197 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA IL+ V + L ++ + FG VAKL+ GV R++ I+ L + + + GT
Sbjct: 83 DSLVAAILYRGVREGQIKLPAVSQRFGPVVAKLIDGVQRMAAISDSLSPRKSLVL--GTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ +K ELEDL F L+P +++ +A + R R+ R I+ ++S + +
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFISDVMSQLKNELQA 253
Query: 192 ASDDESFTTFDEHVLSM 208
D + +H+ S+
Sbjct: 254 TGVDADISGRAKHIYSI 270
>gi|289208234|ref|YP_003460300.1| (p)ppGpp synthetase I SpoT/RelA [Thioalkalivibrio sp. K90mix]
gi|288943865|gb|ADC71564.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalivibrio sp. K90mix]
Length = 733
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 101/163 (61%), Gaps = 21/163 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM+RK + ++YD RA RV+V + + CY++L
Sbjct: 237 GIQARVFGRPKHIYSIWKKMQRKQTSLDELYDLRATRVIVDE---------LATCYTVLG 287
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH W + EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT++M ++AE G+AAH
Sbjct: 288 IVHNDWRHLPSEFDDYIANPKDNGYQSLHTAVVGPEGKVVEVQIRTREMDDFAELGVAAH 347
Query: 397 WLYKETGNKLQSISSMDESDIEASSSLSK-----DTDDHNPLD 434
W YKE G + Q+++ A SSL + D D N LD
Sbjct: 348 WRYKEGGREDQALN-------RAISSLRQLLEAADNSDQNLLD 383
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 10/127 (7%)
Query: 32 SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPR 91
+++E FGD +A+L V+ L RR G E+A LR ML+ MVDD R
Sbjct: 91 ALKERFGDSIARLTVNVAALVS--------RRFEAPVGR--PEQAERLRRMLMAMVDDVR 140
Query: 92 VVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 151
VLIKLA R+ ++R P AR +AQETL + LA+RLG+ LK E+EDL +L+
Sbjct: 141 AVLIKLAYRVQHLRLAVKEPDDGARVLAQETLDVIAPLANRLGVGQLKWEMEDLALRILE 200
Query: 152 PQIFRKM 158
P+ +R++
Sbjct: 201 PETYREI 207
>gi|89900856|ref|YP_523327.1| (p)ppGpp synthetase I SpoT/RelA [Rhodoferax ferrireducens T118]
gi|89345593|gb|ABD69796.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Rhodoferax ferrireducens T118]
Length = 751
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 83/129 (64%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
GM VT+ R K ++SI KMR K + +V+D RALR+VV D I CY+ L
Sbjct: 259 GMSVTVQGRPKHIFSIVKKMRGKSLAFDQVHDIRALRIVVAD---------IADCYAALS 309
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH + PI EFDDYI PK +GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAH
Sbjct: 310 WVHSQFTPIAEEFDDYIAKPKANGYQSLHTVVRDAAGLPIEIQIRTQAMHDHAEHGVAAH 369
Query: 397 WLYKETGNK 405
W YKE G K
Sbjct: 370 WAYKEAGVK 378
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 26 ACESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHR------RINVNQGTLGHEE 75
AC+ L +E FGD A L ++L + + R+ + + +
Sbjct: 87 ACDHLNKPQEVIAKAFGDNFAALAVETTKLVRVQRQARQAQVASERAATGIPMAQTAAAQ 146
Query: 76 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 135
++R MLL D RVV+++LA RL +R A A VA+E L ++ LA+RLG+
Sbjct: 147 TENVRKMLLAFSRDLRVVMLRLASRLQTLRFFAAARQAAPPGVAREALQVFAPLANRLGI 206
Query: 136 WALKAELEDLCFAVLQPQIFRKM 158
W +K E+EDL F L+P ++R++
Sbjct: 207 WEIKWEMEDLAFRFLEPDVYRQV 229
>gi|398929740|ref|ZP_10664144.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM48]
gi|398952956|ref|ZP_10675074.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM33]
gi|398154366|gb|EJM42839.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM33]
gi|398166469|gb|EJM54564.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM48]
Length = 747
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 9/197 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA IL+ V + L ++ + FG VAKL+ GV R++ I+ L + + + GT
Sbjct: 83 DSLVAAILYRGVREGQIKLPAVSQRFGPVVAKLIDGVQRMAAISDSLSPRKSLVL--GTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ +K ELEDL F L+P +++ +A + R R+ R I+ ++S + +
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFISDVMSQLKNELQA 253
Query: 192 ASDDESFTTFDEHVLSM 208
D + +H+ S+
Sbjct: 254 TGVDADISGRAKHIYSI 270
>gi|407363204|ref|ZP_11109736.1| (p)ppGpp synthetase SpoT/RelA [Pseudomonas mandelii JR-1]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 9/197 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIELPAVSQRFGPVVAKLIDGVLRMAAISASL--SPRQSLVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ +K ELEDL F L+P +++ +A + R R+ R I +++ ++ +
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLDRERFIADVMNQLKVELQA 253
Query: 192 ASDDESFTTFDEHVLSM 208
D + +H+ S+
Sbjct: 254 TGVDADISGRAKHIYSI 270
>gi|398904229|ref|ZP_10652153.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM50]
gi|398176171|gb|EJM63901.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM50]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIQLPAVSQRFGPVVAKLIDGVLRMAAISASL--SPRQSLVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|398861459|ref|ZP_10617088.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM79]
gi|398233120|gb|EJN19064.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM79]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIQLPAVSQRFGPVVAKLIDGVLRMAAISASL--SPRQSLVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|398839672|ref|ZP_10596917.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM102]
gi|398112302|gb|EJM02165.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM102]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIQLPTVSQRFGPVVAKLIDGVLRMAAISASL--SPRQSLVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|398938103|ref|ZP_10667592.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM41(2012)]
gi|398166296|gb|EJM54397.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM41(2012)]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA IL+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAILYRGVREGQIELPAVSQRFGPVVAKLIDGVLRMAAISASL--SPRQSLVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|399008255|ref|ZP_10710732.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM17]
gi|425900909|ref|ZP_18877500.1| GTP diphosphokinase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|397883302|gb|EJK99788.1| GTP diphosphokinase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|398117184|gb|EJM06937.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM17]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 9/197 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIPLPAVSQRFGPVVAKLIDGVLRMAAISASL--SPRQSLVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 AQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ +K ELEDL F L+P+ +++ +A + R R+ R I+ +++ + R
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPEQYKQ----IAKLLHER-RLDRERFISDVMNQLQNELRA 253
Query: 192 ASDDESFTTFDEHVLSM 208
D + +H+ S+
Sbjct: 254 TGVDADISGRAKHIYSI 270
>gi|389682225|ref|ZP_10173568.1| GTP diphosphokinase [Pseudomonas chlororaphis O6]
gi|388554099|gb|EIM17349.1| GTP diphosphokinase [Pseudomonas chlororaphis O6]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L ++ + FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVLYRGVREGQIPLPAVSQRFGPVVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GTQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P+ ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|241763707|ref|ZP_04761756.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax delafieldii 2AN]
gi|241367096|gb|EER61470.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax delafieldii 2AN]
Length = 737
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ ++ R K +YSI KMR K + +V D RALRVVV P+++ CY+ L
Sbjct: 249 ISASVQGRPKHIYSIVKKMRGKSLNFDQVLDIRALRVVV---------PSVKDCYAALSW 299
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + PI EFDDYI PKP+GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAHW
Sbjct: 300 VHEQFTPIVEEFDDYIARPKPNGYQSLHTIVRDAAGKPIEIQIRTQAMHDHAEHGVAAHW 359
Query: 398 LYKETGNK-LQSISSMDESD 416
YKE G+K +S+ E D
Sbjct: 360 AYKEAGSKGYAGVSATGEYD 379
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 9/137 (6%)
Query: 26 ACESLGSIEE----EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRV 81
AC L EE FG+ A L ++L + + R ++++ + ++R
Sbjct: 87 ACGHLNKPEEVIAKAFGENFAALAVETTKLMRVQRQARGAQQVDDPA-----VQTENVRK 141
Query: 82 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 141
MLL D RVV+++LA RL +R A + ++A+E+L ++ LA+RLG+W +K E
Sbjct: 142 MLLAFSRDLRVVMLRLASRLQTLRFHAASKRPVSPSLARESLQVFAPLANRLGIWQVKWE 201
Query: 142 LEDLCFAVLQPQIFRKM 158
LEDL F L+P ++++
Sbjct: 202 LEDLSFRFLEPDTYKEV 218
>gi|398998667|ref|ZP_10701435.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM21]
gi|398119732|gb|EJM09413.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM21]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA IL+ V + L ++ + FG VAKL+ GV R++ I+ L + + + GT
Sbjct: 83 DSLVAAILYRGVREGQILLPAVSQRFGPVVAKLIDGVQRMAAISDSLSPRKSMVL--GTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKTAGDEKRNQVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|94502135|ref|ZP_01308636.1| GTP pyrophosphokinase [Bermanella marisrubri]
gi|94425737|gb|EAT10744.1| GTP pyrophosphokinase [Oceanobacter sp. RED65]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 101/169 (59%), Gaps = 15/169 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K +YSI+ KM RK++ +VYD RA+R++V P ++ CY+ L
Sbjct: 255 GIECDVQGRAKHIYSIWRKMNRKNIDFGQVYDIRAVRILV---------PEVKDCYAALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I H W I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 ITHTFWKHIPHEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTFDMHEDAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLK 445
WLYK T +SS D E S L + + H+ L DL + SL+
Sbjct: 366 WLYKGT-----DVSSKDNGYEEKISWLRQVLEWHDEL-GDLGELMGSLR 408
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 90/148 (60%), Gaps = 7/148 (4%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+V+A I++ V + SL +E+EFG+E+AKL+ GV R++ I Q + R+ V LG
Sbjct: 83 SVIAAIIYRPVREGRLSLEKVEKEFGEEIAKLIDGVLRMAAITQA-QSASRLKV----LG 137
Query: 73 HEEAN--DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
EA +R ML+ M+DD RV LIKLA+R +R + P + VA+E ++ LA
Sbjct: 138 QSEAQVEHIRKMLVAMIDDVRVALIKLAERTSVIRVVKNAPEERRMKVAREVFDVYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P+ ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPEAYKQI 225
>gi|392552203|ref|ZP_10299340.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Pseudoalteromonas
spongiae UST010723-006]
Length = 728
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 99/158 (62%), Gaps = 13/158 (8%)
Query: 244 AKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGI 303
AK++ D IA S ++ AL K L + G+E + R K +YSI+ KM+ K+
Sbjct: 213 AKLLDDKRIARESYMSNMVALVKAKLAES----GIEAEVYGRPKHIYSIYKKMQNKNYEF 268
Query: 304 HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQS 363
+++D RA+RVVV + +Q CY+ L IVH W ++ EFDDYI PK +GYQS
Sbjct: 269 DQLFDIRAMRVVVNE---------LQDCYAALGIVHTNWRHLNKEFDDYIATPKANGYQS 319
Query: 364 LHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+HT V GP+G +E+QIRTQ MH+ AE G+AAHWLYKE
Sbjct: 320 IHTVVFGPEGKTVEIQIRTQAMHQDAELGVAAHWLYKE 357
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 69/126 (54%), Gaps = 9/126 (7%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+ + F V +L+ GV +++ + L QG G + +++R MLL MV+D R
Sbjct: 96 LSKHFSRSVVELLKGVEQMAALGAL--------SFQGK-GSTQIDNIRRMLLAMVEDVRA 146
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
V+IKLA ++ +R + + A+ET I+ LA+RLG+ LK ELEDL L P
Sbjct: 147 VVIKLAQQVCLLRELKNASEEERVIAAKETDNIFAPLANRLGIGQLKWELEDLSLRYLHP 206
Query: 153 QIFRKM 158
+ ++++
Sbjct: 207 EKYKEI 212
>gi|119897979|ref|YP_933192.1| GTP diphosphokinase [Azoarcus sp. BH72]
gi|119670392|emb|CAL94305.1| GTP diphosphokinase [Azoarcus sp. BH72]
Length = 733
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI++KMR K + +VYD RALRV+V + ++ CY++L
Sbjct: 246 GIKAEIQGRPKHIYSIYNKMRAKRLDFSQVYDIRALRVLVDE---------VKDCYTVLG 296
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH++W PI+ EFDDYI PK + YQSLHTAV DG ALEVQIRT MH +AE G+AAH
Sbjct: 297 LVHQIWQPINKEFDDYITKPKGNNYQSLHTAVLAGDGRALEVQIRTHDMHRHAELGVAAH 356
Query: 397 WLYKE 401
W YKE
Sbjct: 357 WRYKE 361
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 87/160 (54%), Gaps = 9/160 (5%)
Query: 2 LIPSSGKRAVDTVVAGIL---HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLL 58
LI +S + DT +A +L ++ +DDA IEE FG VA+LV G+ +L N L
Sbjct: 63 LIAASLRLDADTRIAALLFSANEYLDDAPTL---IEERFGGSVARLVEGLRKL---NGLR 116
Query: 59 RRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAV 118
R + LR MLL MV+D RVVLI+LA R +R + +
Sbjct: 117 VVTRMTATASAPEIRAQTEVLRKMLLAMVEDIRVVLIRLASRTQTLRYYADTKSENRQDI 176
Query: 119 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+E+L I+ LA+RLG+W LK ELEDL F L+P ++++
Sbjct: 177 ARESLDIYAPLANRLGVWQLKWELEDLSFRFLEPDTYKRI 216
>gi|145589013|ref|YP_001155610.1| (p)ppGpp synthetase I SpoT/RelA [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047419|gb|ABP34046.1| (p)ppGpp synthetase I, SpoT/RelA [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 676
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 86/132 (65%), Gaps = 12/132 (9%)
Query: 270 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 329
I T+ I G + R K +YSI+ KM+ K + +YD RA RV+V D ++
Sbjct: 205 IKTARIDG---EVLGRPKHIYSIWKKMQGKSLDFANLYDVRAFRVLVED---------VK 252
Query: 330 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 389
CY++L IVH +W P+ EFDDYI PKP+GYQSLHT V DG+A E+QIRT +MH+ A
Sbjct: 253 TCYAVLGIVHNIWQPVPREFDDYIARPKPNGYQSLHTVVMNEDGAAFEIQIRTHEMHQQA 312
Query: 390 EHGLAAHWLYKE 401
E+GLAAHW YKE
Sbjct: 313 EYGLAAHWRYKE 324
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 99/200 (49%), Gaps = 13/200 (6%)
Query: 37 FGDEVAKLVAGVSRLSYIN-QLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLI 95
GDE AKL+ G L +L+R ++V+ G EE LR MLL DD RVVLI
Sbjct: 63 IGDEPAKLLIGYRGLRQAQAKLVRDDGGLSVS----GQEEM--LRKMLLAFGDDLRVVLI 116
Query: 96 KLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 155
LA RL +R + A + AQE L I SLA+RLG+W +K E+EDL F L P+ +
Sbjct: 117 YLASRLETLRWVTQEKMAMSVTWAQEILNIDASLANRLGIWQMKWEMEDLAFRALSPETY 176
Query: 156 RKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEA 214
R ++A+M + R+ I IV + +TA D +H+ S+ K +
Sbjct: 177 R----EIANMLDAK-RIERQAFIERIVVQLQEEIKTARIDGEVLGRPKHIYSIWKKMQGK 231
Query: 215 VVPFDILSDRRKRTKFLHDL 234
+ F L D R + D+
Sbjct: 232 SLDFANLYDVRAFRVLVEDV 251
>gi|422647052|ref|ZP_16710183.1| RelA/SpoT protein [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330960597|gb|EGH60857.1| RelA/SpoT protein [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 747
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 90/141 (63%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADIGGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L +E+ FG VAKL+ GV R++ I+ L + + L
Sbjct: 83 DSLVAAVIYRGVREGVIPLPEVEQRFGSTVAKLIDGVLRMAAISASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|319793992|ref|YP_004155632.1| (p)ppGpp synthetase I SpoT/RelA [Variovorax paradoxus EPS]
gi|315596455|gb|ADU37521.1| (p)ppGpp synthetase I, SpoT/RelA [Variovorax paradoxus EPS]
Length = 746
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 93/146 (63%), Gaps = 18/146 (12%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
LE+EL G+ T+ R K++YSI KMR K + +V+D ALRVVV D
Sbjct: 245 LERELQAE-----GVHATVQGRPKNIYSIVKKMRGKSLDFAQVFDILALRVVVAD----- 294
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ----GPDGSALEVQ 379
++ CY+ L VH + PID EFDDYI PKP+GYQSLHT V+ G G +E+Q
Sbjct: 295 ----VKDCYAALAWVHTHFQPIDEEFDDYIARPKPNGYQSLHTVVRELVDGKPGKPIEIQ 350
Query: 380 IRTQKMHEYAEHGLAAHWLYKETGNK 405
IRT++MH++AEHG+AAHW YKE G+K
Sbjct: 351 IRTEEMHDHAEHGVAAHWAYKEAGHK 376
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
I + FGD A L ++L + + R + + +G E ++R MLL D RV
Sbjct: 100 IAKVFGDNFAALAVETTKLVRVQEQARSASQGHHIEGAGAQTE--NVRKMLLAFSRDLRV 157
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
V+++LA RL +R A +VA+E+L ++ LA+RLG+W +K E+EDL F ++P
Sbjct: 158 VMLRLASRLQTLRHAAASKQPAPESVARESLQVFAPLANRLGIWQVKWEIEDLSFRFIEP 217
Query: 153 QIFR 156
+ ++
Sbjct: 218 ETYK 221
>gi|398811748|ref|ZP_10570537.1| (p)ppGpp synthetase, RelA/SpoT family [Variovorax sp. CF313]
gi|398079838|gb|EJL70676.1| (p)ppGpp synthetase, RelA/SpoT family [Variovorax sp. CF313]
Length = 734
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 89/133 (66%), Gaps = 13/133 (9%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ T+ R K++YSI KMR K + +V+D ALRVVV P ++ CY+ L
Sbjct: 241 GVKATVQGRPKNIYSIVKKMRGKSLDFEQVFDILALRVVV---------PDVKDCYAALA 291
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ----GPDGSALEVQIRTQKMHEYAEHG 392
VH + PID EFDDYI PKP+GYQSLHT V+ G G +E+QIRT++MH++AEHG
Sbjct: 292 WVHSHFQPIDEEFDDYIARPKPNGYQSLHTVVRELVDGKAGKPIEIQIRTEEMHDHAEHG 351
Query: 393 LAAHWLYKETGNK 405
+AAHW YKE G+K
Sbjct: 352 VAAHWAYKEAGHK 364
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
I + FGD A L ++L + + R + + +G E ++R MLL D RV
Sbjct: 88 IAKVFGDNFAALAVETTKLVRVQEQARSASQGHHVEGAGAQTE--NVRKMLLAFSRDLRV 145
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
V+++LA RL +R A +VA+E+L ++ LA+RLG+W +K E+EDL F L+P
Sbjct: 146 VMLRLASRLQTLRHAAASKQPAPESVARESLQVFAPLANRLGIWQVKWEIEDLSFRFLEP 205
Query: 153 QIFR 156
+ ++
Sbjct: 206 ETYK 209
>gi|70731792|ref|YP_261534.1| GTP diphosphokinase [Pseudomonas protegens Pf-5]
gi|68346091|gb|AAY93697.1| GTP diphosphokinase [Pseudomonas protegens Pf-5]
Length = 747
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L ++ + FG V KL+ GV R++ I L + + L
Sbjct: 83 DSLVAAVLYRGVREGQIQLPAVSQRFGPVVTKLIDGVLRMAAITASLSPRQSL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 138 GTQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADEEKRNRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P+ ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|388258655|ref|ZP_10135830.1| GTP pyrophosphokinase [Cellvibrio sp. BR]
gi|387937414|gb|EIK43970.1| GTP pyrophosphokinase [Cellvibrio sp. BR]
Length = 748
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 98/150 (65%), Gaps = 11/150 (7%)
Query: 258 VACEEALEK--ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
+A +E ++K E L S G+E ++ R K +YSI+ KM+RK + +VYD RA+R++
Sbjct: 238 LARQEYIDKLLERLRSELKKAGIEGSVGGRAKHIYSIWRKMQRKGIPFSQVYDIRAVRIL 297
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V P ++ CY++L IVH LW I EFDDYI +PK +GY+SLHTAV GP+
Sbjct: 298 V---------PTVRDCYAVLGIVHSLWRNIPHEFDDYIASPKENGYRSLHTAVWGPENKV 348
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
LE+QIRTQ+MHE +E G+ AHW YK T K
Sbjct: 349 LEIQIRTQEMHEESELGVCAHWRYKGTDTK 378
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 89/147 (60%), Gaps = 2/147 (1%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D +VA IL+ V + +L ++ FG+ VAKLV GV R++ I+ +R+ + G+
Sbjct: 85 DALVAAILYRAVREHKITLVELQNRFGETVAKLVKGVLRMAAIS--YQRNEHEDRVLGSQ 142
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E+A +R ML+ MVDD RV LIKLA+R +R++ + R VA+E I+ LA
Sbjct: 143 AVEQAEKIRKMLVSMVDDVRVALIKLAERTCAIRSVKNAEADRRRQVAREVADIYAPLAH 202
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F LQP+ ++++
Sbjct: 203 RLGIGHIKWELEDLSFRYLQPEDYKRI 229
>gi|302784096|ref|XP_002973820.1| hypothetical protein SELMODRAFT_100367 [Selaginella moellendorffii]
gi|300158152|gb|EFJ24775.1| hypothetical protein SELMODRAFT_100367 [Selaginella moellendorffii]
Length = 542
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 105/162 (64%), Gaps = 8/162 (4%)
Query: 1 MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR 60
+L+ S+G A V AG+LHD +DD+ I FGD+VA LV GVS++S ++QL R
Sbjct: 49 ILLASAGAEAT-VVAAGLLHDTLDDSSIDEAQIRAIFGDDVADLVVGVSKISQLSQLARD 107
Query: 61 HRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQ 120
+ N+ TL EA+ LR M L MVD RVVLIKLADRLHNMRT+ AL K +A
Sbjct: 108 N---NIASKTL---EADRLRTMFLAMVD-VRVVLIKLADRLHNMRTLEALAAEKQNRIAS 160
Query: 121 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
ETL I +A+RLG+W+ KAE+EDLCF L P ++++ A L
Sbjct: 161 ETLEILVPIANRLGIWSWKAEMEDLCFKYLNPTEYQELAAKL 202
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 17/159 (10%)
Query: 250 AGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 309
G+ L+++ E L+K L S I L R K+L+SI++KM++K I ++YD
Sbjct: 208 GGVVLSAI----EQLDKALRKSKIKIED----LCGRSKTLFSIYTKMKKKGRSIDEIYDV 259
Query: 310 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 369
R LR++V D+ CY L+ VH+LW I G+ DYI PK +GYQSLHT V
Sbjct: 260 RGLRLIVKDEAD---------CYKALEFVHKLWDHIPGKLKDYIKQPKANGYQSLHTVVS 310
Query: 370 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS 408
G DG LEVQIRT++MH +AE G+AAHW YKE + S
Sbjct: 311 GKDGLPLEVQIRTKEMHSHAEFGMAAHWRYKEGNDTKHS 349
>gi|224126643|ref|XP_002319888.1| predicted protein [Populus trichocarpa]
gi|222858264|gb|EEE95811.1| predicted protein [Populus trichocarpa]
Length = 94
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/70 (94%), Positives = 69/70 (98%)
Query: 82 MLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAE 141
MLLGMV+DPRVVLIKLADRLHNMRTIYAL P+KARAVA+ETLLIWCSLASRLGLWALKAE
Sbjct: 1 MLLGMVNDPRVVLIKLADRLHNMRTIYALQPSKARAVAEETLLIWCSLASRLGLWALKAE 60
Query: 142 LEDLCFAVLQ 151
LEDLCFAVLQ
Sbjct: 61 LEDLCFAVLQ 70
>gi|91774406|ref|YP_544162.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Methylobacillus flagellatus KT]
gi|91708393|gb|ABE48321.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Methylobacillus flagellatus KT]
Length = 740
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 115/433 (26%), Positives = 192/433 (44%), Gaps = 120/433 (27%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T++A +LHDVV+D + I + FG +VA+LV G+S+L +I T
Sbjct: 86 TLIAALLHDVVEDTGVTKQEISDRFGKQVAELVDGLSKLD----------KIEFQSAT-- 133
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A + R MLL A++Q+ +I LA R
Sbjct: 134 QAQAENFRKMLL--------------------------------AMSQDVRVILVKLADR 161
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP-RNRVGYSRRITTIVSSPPLDERT 191
L + V++P+ R++ + +++P NR+G + T+
Sbjct: 162 LHNMS--------TLDVMKPEKQRRIARETLDIYAPIANRLGLNEIYQTL---------- 203
Query: 192 ASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAG 251
+D SF +++ M+ V+ +++ R R + + +
Sbjct: 204 --EDLSF----KYLYPMR---HRVISKAVMAARGNRKEVVGKI----------------- 237
Query: 252 IALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARA 311
L A + L+++ +E ++ R K LYSI+ KM K + ++YD
Sbjct: 238 -----LDAINQRLKEQ---------NIEAEVTGREKHLYSIYKKMTGKTITFSQIYDIYG 283
Query: 312 LRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP 371
RV+V D + CY+ L ++H L+ PI G+F DYI PK +GYQSLHT + GP
Sbjct: 284 FRVIVRD---------LPTCYAALGVLHGLYKPIPGKFKDYIAIPKANGYQSLHTTLFGP 334
Query: 372 DGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDES------DIEASSSLSK 425
G+ +E+QIR+++MH A+ G+AAHWLYK T L ++ DI++ S+ S
Sbjct: 335 FGTPIEIQIRSREMHNIADAGVAAHWLYKTTDAHLTALQQQTHQWLQRLLDIQSESTDSL 394
Query: 426 DTDDHNPLDTDLF 438
+ +H DLF
Sbjct: 395 EFLEH--FKVDLF 405
>gi|419953524|ref|ZP_14469668.1| GTP pyrophosphokinase [Pseudomonas stutzeri TS44]
gi|387969584|gb|EIK53865.1| GTP pyrophosphokinase [Pseudomonas stutzeri TS44]
Length = 747
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 85/126 (67%), Gaps = 9/126 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPEIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRTQ MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTQAMHEEAELGVCAH 365
Query: 397 WLYKET 402
W YK T
Sbjct: 366 WRYKGT 371
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L + + FG VAKL+ GV R++ I+ L + L
Sbjct: 83 DSLVAAVIYRGVREGKIQLAEVHQRFGPVVAKLIEGVLRMAAISASLNPRESL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K + VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKTASEDKRQRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P+ ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|409398264|ref|ZP_11249078.1| GTP pyrophosphokinase [Pseudomonas sp. Chol1]
gi|409117194|gb|EKM93629.1| GTP pyrophosphokinase [Pseudomonas sp. Chol1]
Length = 747
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 85/126 (67%), Gaps = 9/126 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPEIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRTQ MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTQAMHEEAELGVCAH 365
Query: 397 WLYKET 402
W YK T
Sbjct: 366 WRYKGT 371
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L + + FG VAKL+ GV R++ I+ L + L
Sbjct: 83 DSLVAAVIYRGVREGKIQLAEVHQRFGPVVAKLIEGVLRMAAISASLNPRESL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K + VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNASEDKRQRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P+ ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|451823182|ref|YP_007459456.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
gi|451775982|gb|AGF47023.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
Length = 734
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 96/149 (64%), Gaps = 19/149 (12%)
Query: 265 EKELLISTSYI---------PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
E+EL IS YI G++ +S R K +YSI++KM+ KD+ + D A+RV+
Sbjct: 230 ERELFIS-KYIKDISYALIRAGIKGEVSGRPKHIYSIWNKMQTKDMDFFSLSDLSAVRVI 288
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D I+ CY +L ++H +W PI EF+DYI PK +GYQSLHT V+ +GS
Sbjct: 289 VND---------IKNCYEVLGVIHEIWEPITEEFNDYISCPKTNGYQSLHTVVRESNGSL 339
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
LE+QIRT +MH++AEHGLAAHW YKE+ +
Sbjct: 340 LEIQIRTYEMHQFAEHGLAAHWFYKESSH 368
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 37 FGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIK 96
FG ++ L+ G LS I + R N E R MLL M D R++LI+
Sbjct: 103 FGSDIVNLIKGSLSLSKIG-IATRSLSYKFNASNAQKEMK---RKMLLAMAVDLRIILIR 158
Query: 97 LADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 156
L+ RL +R + AQET+ ++ LA+RLG+W +K E+EDL F +L ++
Sbjct: 159 LSSRLQTLRWCSYSHKDVYKEFAQETIDLYSPLANRLGVWQIKWEIEDLSFRILYSNEYK 218
Query: 157 KM 158
K+
Sbjct: 219 KI 220
>gi|88797955|ref|ZP_01113542.1| GTP pyrophosphokinase [Reinekea blandensis MED297]
gi|88779152|gb|EAR10340.1| GTP pyrophosphokinase [Reinekea sp. MED297]
Length = 744
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 88/129 (68%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ + R K +YSI+ KM+RK++ +VYD RA R++V P ++ CY++L
Sbjct: 254 NVQAEIQGRAKHIYSIWRKMKRKNITFSQVYDIRAFRILV---------PEVRDCYTVLG 304
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH +W I EFDDYI +PK +GY+SLHTAV GP+G +E+QIRTQ+MH+ AE G+ AH
Sbjct: 305 IVHSMWRHIPREFDDYIASPKQNGYRSLHTAVIGPEGKVVEIQIRTQEMHDDAELGVCAH 364
Query: 397 WLYKETGNK 405
WLYK T K
Sbjct: 365 WLYKGTDAK 373
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 98/176 (55%), Gaps = 14/176 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D +VA +L+ V + +L ++ ++FG ++A L+ GV R++ I+ R +
Sbjct: 82 DALVAAVLYRTVREEELALETVRDQFGPKIANLIQGVMRMAAISN------RKSTRDSVF 135
Query: 72 GHEEAND--LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
G E +R ML+ M+DD RV LIKLA+R +R I P A+ VA+E I+ L
Sbjct: 136 GQNETQGEAVRKMLVAMIDDVRVALIKLAERTCAIRAIKHSPAARRYRVAREVFDIYAPL 195
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIVS 183
A RLG+ LK ELEDL F ++PQ ++K +A + + +R Y +++ T+++
Sbjct: 196 AHRLGVGHLKWELEDLAFRYIEPQDYKK----IAKLLDEKRLDRQEYIQKVQTLIT 247
>gi|289523398|ref|ZP_06440252.1| GTP diphosphokinase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503090|gb|EFD24254.1| GTP diphosphokinase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 764
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ ++ R K YSI+ KM+RK++ I ++YD ALRV+ ++ CY +L
Sbjct: 278 GIRAFITGRAKHFYSIYEKMKRKNLTIEQMYDLLALRVITN---------SVVDCYQVLG 328
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT MH AE+G+AAH
Sbjct: 329 IVHTIWKPIPGQFDDYIANPKSNMYQSLHTTVVGPSGEPLEVQIRTWDMHWIAEYGIAAH 388
Query: 397 WLYKE 401
W YKE
Sbjct: 389 WRYKE 393
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 94/149 (63%), Gaps = 12/149 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V+T+VA +LHDV++D + ++ +FG VA LV GV++L N++ T
Sbjct: 113 VETLVAALLHDVIEDTDSTFEEVKAKFGTNVAVLVDGVTKLG------------NIDFKT 160
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +A +LR M L M D RVVLIKLADRLHNMRTI L K +A+ETL I+ LA
Sbjct: 161 VEDYQAENLRKMFLVMAKDIRVVLIKLADRLHNMRTIQVLRREKQLRIARETLEIYAPLA 220
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMR 159
RLG++ +K ELEDL F VL+P ++ ++R
Sbjct: 221 HRLGIYHMKRELEDLAFKVLEPDMYYEIR 249
>gi|389871811|ref|YP_006379230.1| GTP pyrophosphokinase [Advenella kashmirensis WT001]
gi|388537060|gb|AFK62248.1| GTP pyrophosphokinase [Advenella kashmirensis WT001]
Length = 764
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 92/144 (63%), Gaps = 9/144 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI++KMR K + ++YD A+R++V ++ CY+ L
Sbjct: 235 GIEADVSGRAKHIYSIYNKMRNKRLTFDQLYDLLAIRIIVANERD---------CYATLS 285
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++ W P+ EFDDYI PKP+GY+SLHT ++ DG E QIRT+KMH++AE+G+AAH
Sbjct: 286 LLQARWTPVMNEFDDYIARPKPNGYRSLHTVLKTADGHTFEAQIRTRKMHDFAEYGMAAH 345
Query: 397 WLYKETGNKLQSISSMDESDIEAS 420
W YKE G K ++++ D + S
Sbjct: 346 WRYKEAGPKGGQVAAVSMYDRQVS 369
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 11/126 (8%)
Query: 37 FGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND----LRVMLLGMVDDPRV 92
FG E L+ G L I + R N + GH E++ LR MLL M D R+
Sbjct: 87 FGLETFSLINGSRALLRIGAIAR-------NASSQGHNESSGQREMLRKMLLAMASDLRI 139
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VLI+LA RL +R +A+ET ++ SLA+RLG+W +K E+EDL F L P
Sbjct: 140 VLIRLASRLQTLRWYAETKNPCPIELAEETRDVYASLANRLGIWQIKWEMEDLSFRFLSP 199
Query: 153 QIFRKM 158
+I++ +
Sbjct: 200 EIYKDI 205
>gi|121998519|ref|YP_001003306.1| metal dependent phosphohydrolase [Halorhodospira halophila SL1]
gi|121589924|gb|ABM62504.1| metal dependent phosphohydrolase [Halorhodospira halophila SL1]
Length = 736
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM+RK + +YD RA+R++V D+ + CY+ L
Sbjct: 249 GLKAEVYGRPKHIYSIYRKMQRKGLRFDDLYDLRAVRILVDDE---------RTCYAALG 299
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI EFDDYI PK + Y+SLHTAV GP+G A+EVQIRT +MH AE G+AAH
Sbjct: 300 IVHGLWTPIPREFDDYIATPKENNYRSLHTAVAGPEGKAVEVQIRTHEMHAEAELGIAAH 359
Query: 397 WLYKETGNK 405
W YKE G +
Sbjct: 360 WRYKEGGKQ 368
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 8/153 (5%)
Query: 19 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 78
+HD+ + S+ + + G ++A+L GV R+ I R R + + E
Sbjct: 84 IHDLPELQEGSIAGLRKHLGGDIAELAQGVCRMHGIG----RFRDSAELEAAIQGERVEG 139
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR MLL M D RVV I LA+RLH++R+ L +A+ET I+ LA+RLG+W L
Sbjct: 140 LRKMLLAMARDVRVVFIALAERLHDLRSCRGLDEEGRMRLARETRDIYAPLANRLGIWQL 199
Query: 139 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
K ELEDL F L+P+ + DLA + R R
Sbjct: 200 KWELEDLAFRHLEPEAY----MDLAKRLAERRR 228
>gi|292491389|ref|YP_003526828.1| RelA/SpoT family protein [Nitrosococcus halophilus Nc4]
gi|291579984|gb|ADE14441.1| RelA/SpoT family protein [Nitrosococcus halophilus Nc4]
Length = 712
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K LYSI+ KMR K++ H+++D A RV+V D + CY+ L
Sbjct: 224 GLRGEVSGRPKHLYSIWKKMRNKNLDFHQLFDVHAFRVIVDD---------VSACYATLS 274
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW PI EFDDYI NPKP+GY+SLHTAV GP +E+QIR+ +MH +E G+A+H
Sbjct: 275 LVHTLWTPIPEEFDDYIANPKPNGYRSLHTAVLGPGKKPMEIQIRSFQMHGESELGVASH 334
Query: 397 WLYKE 401
W YKE
Sbjct: 335 WRYKE 339
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 84/148 (56%), Gaps = 9/148 (6%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+T AG+L ++ + I +E G + +L+ G RL+ + +H R + T
Sbjct: 56 TETQSAGLLLPAMEMGVLNPAVITKELGPAITRLLRGAERLAVL-----KHYRSSEKDPT 110
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A LR MLL +V+DPRVVL++LAD L+ +R A + + QETL I+ LA
Sbjct: 111 ----QAEKLRKMLLAIVEDPRVVLVRLADHLYRLRHAKNALEATRQTLGQETLDIFAPLA 166
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK ELEDL L+P+ ++++
Sbjct: 167 NRLGIWQLKWELEDLALRYLEPETYQQL 194
>gi|429742735|ref|ZP_19276350.1| putative GTP diphosphokinase [Neisseria sp. oral taxon 020 str.
F0370]
gi|429167767|gb|EKY09653.1| putative GTP diphosphokinase [Neisseria sp. oral taxon 020 str.
F0370]
Length = 736
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ ++ R K +YSI+ KM +K +G +YD RA+R++V + CY+ L
Sbjct: 252 GIRYDVAGRPKHIYSIYKKMVKKKLGFDGLYDIRAVRILVD---------TVPECYTTLG 302
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI GEFDDYI NPK +GYQSLHT + GP+ +EVQIRT +MH + E G+AAH
Sbjct: 303 IVHSLWQPIPGEFDDYIANPKGNGYQSLHTVIVGPEDKGVEVQIRTFEMHRFNEFGVAAH 362
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 363 WRYKEGGK 370
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+ V A +L D+ ++ E G VA LV G+ + + R N+N
Sbjct: 78 EAVAATVLADISSYREGWYEAVAETCGKTVADLVRGIDEVQKLTHFARVD---NLNTPEE 134
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP--PAKARAVAQETLLIWCSL 129
E+A +R MLL MV D RVV++KLA R + + ++P P K RA+A+ETL I+ L
Sbjct: 135 RAEQAETMRKMLLAMVSDIRVVIVKLALRTQTLHFLGSVPDSPEK-RALAKETLDIFAPL 193
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+RLG+W LK +LEDL F P+ +R++
Sbjct: 194 ANRLGVWQLKWQLEDLGFRHQNPEKYREI 222
>gi|404380117|ref|ZP_10985157.1| RelA/SpoT family protein [Simonsiella muelleri ATCC 29453]
gi|404294423|gb|EFG30276.2| RelA/SpoT family protein [Simonsiella muelleri ATCC 29453]
Length = 731
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 83/127 (65%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ ++ R K +YSI+ KM +K + +YD RA+RV+V I CY+ L
Sbjct: 247 GIVCDVAGRPKHIYSIYKKMVKKKLDFDGLYDIRAVRVLVN---------TIAECYTTLG 297
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT +MHE+ E G+AAH
Sbjct: 298 IVHSLWQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGIEVQIRTHEMHEFNEFGVAAH 357
Query: 397 WLYKETG 403
W YKE G
Sbjct: 358 WRYKEGG 364
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 73/131 (55%), Gaps = 12/131 (9%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND---LRVMLLGMVDD 89
+ E+ VA LV G+ + + R V+ T E AN +R MLL MV D
Sbjct: 94 LTEQCCPNVAMLVQGIDEVQKLTHFAR------VDNLTTPEERANQAETMRKMLLAMVSD 147
Query: 90 PRVVLIKLADRLHNMRTIYALP--PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
RVVLIKLA R M+ +P P K R+VA+ETL I+ LA+RLG+W LK +LEDL F
Sbjct: 148 IRVVLIKLALRTRTMQYFAQVPDSPHK-RSVAKETLDIFAPLANRLGVWQLKWQLEDLGF 206
Query: 148 AVLQPQIFRKM 158
P+ ++++
Sbjct: 207 RYQNPEEYKRI 217
>gi|388567354|ref|ZP_10153788.1| (p)ppGpp synthetase I SpoT/RelA [Hydrogenophaga sp. PBC]
gi|388265376|gb|EIK90932.1| (p)ppGpp synthetase I SpoT/RelA [Hydrogenophaga sp. PBC]
Length = 761
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 88/144 (61%), Gaps = 14/144 (9%)
Query: 262 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 321
E L++ LL G+ + R K +YSI KMR K + +V+D RALRV+V +
Sbjct: 263 EDLQRALLAQ-----GIAAMVQGRPKHIYSIVKKMRGKALDFEQVFDIRALRVIVLETAD 317
Query: 322 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 381
CY++L VH + P+ EFDDYI PKP+GYQSLHT V+ G A E+QIR
Sbjct: 318 ---------CYAVLSFVHEHFTPVADEFDDYIAKPKPNGYQSLHTVVRDAQGRAFEIQIR 368
Query: 382 TQKMHEYAEHGLAAHWLYKETGNK 405
TQ MH++AEHG+AAHW YKE G K
Sbjct: 369 TQAMHDHAEHGVAAHWAYKEAGAK 392
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%)
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
L + ++R MLL D RVV+++LA RL +R ++ +A E+L ++ LA
Sbjct: 156 LAASQTENVRKMLLAFSRDLRVVMLRLASRLQTLRYFASIRGDPGEILASESLHVFAPLA 215
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFR 156
+RLG+W +K E+EDL F L+PQ ++
Sbjct: 216 NRLGIWQIKWEMEDLAFRFLEPQTYK 241
>gi|384440422|ref|YP_005655146.1| Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (PpGpp
synthase) [Thermus sp. CCB_US3_UF1]
gi|359291555|gb|AEV17072.1| Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (PpGpp
synthase) [Thermus sp. CCB_US3_UF1]
Length = 726
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 106/178 (59%), Gaps = 14/178 (7%)
Query: 256 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
++ EEAL K+ L+ + G EVT R K LYSI+ KM R+ + ++YD A+RV+
Sbjct: 222 AMAILEEALRKDELLQAQ-LQGFEVT--GRPKHLYSIWKKMEREGKALEQIYDLLAVRVI 278
Query: 316 VGDKNG-TLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP 371
+ K T G A+ Q CY +L +VH LW PI G DYI PKP+GYQSLHT V
Sbjct: 279 LDPKPAPTEEGQALREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIAL 338
Query: 372 DGSALEVQIRTQKMHEYAEHGLAAHWLYK-------ETGNKLQSISSMDESDIEASSS 422
+G LEVQIRT++MH AE+G+AAHWLYK E ++ + S+ E E SSS
Sbjct: 339 EGLPLEVQIRTREMHRVAEYGIAAHWLYKEGLTDPEEVKRRISWLRSIQEWQQEFSSS 396
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 95/163 (58%), Gaps = 13/163 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+TV AG+LHD V+D + +E FG V ++V G +++S + +L L
Sbjct: 67 ETVAAGLLHDTVEDCGVAPEELERRFGPGVRRIVEGETKVSKLYKL-----------ANL 115
Query: 72 GHEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
EE A DLR M + M +D R++++KLADRLHN+RT+ +PP K R +AQETL I+ L
Sbjct: 116 EGEEKRAEDLRQMFIAMAEDVRIIIVKLADRLHNLRTLEHMPPHKQRRIAQETLEIYAPL 175
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
A RLG+ LK ELEDL F L P+ + + + + R RV
Sbjct: 176 AHRLGIGQLKWELEDLSFRYLHPEAYHALLSRIQETQEARERV 218
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 33/145 (22%)
Query: 572 FEGKPVDSVVSRRSSDSVAPTSMEA------------SINNKVRLLRTMLRWEEQLRSE- 618
EG P++ + R VA + A + ++ LR++ W+++ S
Sbjct: 338 LEGLPLEVQIRTREMHRVAEYGIAAHWLYKEGLTDPEEVKRRISWLRSIQEWQQEFSSSR 397
Query: 619 ---ASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKL 674
++ + LGG+ V V P G I+ L G+T D A + E G
Sbjct: 398 EFVEAVTRDLLGGR-------------VFVFTPKGRIINLPKGATPVDFAYHIHTEVGHH 444
Query: 675 VL---VNGQLVLPNTELKDGDIVEV 696
++ VNG++V + EL++G+IVE+
Sbjct: 445 MVGAKVNGRIVPLSYELQNGEIVEI 469
>gi|302803634|ref|XP_002983570.1| hypothetical protein SELMODRAFT_118606 [Selaginella moellendorffii]
gi|300148813|gb|EFJ15471.1| hypothetical protein SELMODRAFT_118606 [Selaginella moellendorffii]
Length = 540
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 104/162 (64%), Gaps = 8/162 (4%)
Query: 1 MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR 60
+L+ S+G A V AG+LHD +DD+ I FGD+VA LV GVS++S ++QL R
Sbjct: 49 ILLASAGAEAT-VVAAGLLHDTLDDSSIDEAQIRAIFGDDVADLVVGVSKISQLSQLARD 107
Query: 61 HRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQ 120
+ N+ TL EA LR M L MVD RVVLIKLADRLHNMRT+ AL K +A
Sbjct: 108 N---NIASKTL---EAGRLRTMFLAMVD-VRVVLIKLADRLHNMRTLEALATEKQNRIAS 160
Query: 121 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
ETL I +A+RLG+W+ KAE+EDLCF L P ++++ A L
Sbjct: 161 ETLEILVPIANRLGIWSWKAEMEDLCFKYLNPTEYQELAAKL 202
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 17/159 (10%)
Query: 250 AGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 309
G+ L+++ E L+K L S I L R K+L+SI++KM++K I ++YD
Sbjct: 208 GGVVLSAI----EQLDKALRKSKIKIED----LCGRSKTLFSIYTKMKKKGRSIDEIYDV 259
Query: 310 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 369
R LR++V D+ CY L+ VH+LW I G+ DYI PK +GYQSLHT V
Sbjct: 260 RGLRLIVKDEAD---------CYKALEFVHKLWDHIPGKLKDYIKQPKANGYQSLHTVVS 310
Query: 370 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS 408
G DG LEVQIRT++MH +AE G+AAHW YKE + S
Sbjct: 311 GKDGLPLEVQIRTKEMHSHAEFGMAAHWRYKEGNDTKHS 349
>gi|285019015|ref|YP_003376726.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Xanthomonas albilineans GPE PC73]
gi|283474233|emb|CBA16734.1| putative guanosine polyphosphate pyrophosphohydrolase/synthetase
protein [Xanthomonas albilineans GPE PC73]
Length = 725
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 94/143 (65%), Gaps = 10/143 (6%)
Query: 262 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 321
EA++K L + + + G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D
Sbjct: 225 EAVKKTLSKALA-VQGLCAEISGRPKHIYSIWRKMQKKRLAFDQLYDLRAVRVMVDD--- 280
Query: 322 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 381
+ CY+ L +VH LW+P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIR
Sbjct: 281 ------VAACYAALGVVHALWVPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIR 334
Query: 382 TQKMHEYAEHGLAAHWLYKETGN 404
T +MH AE G+AAHW YKE G
Sbjct: 335 THEMHAQAELGVAAHWKYKEGGK 357
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 49/80 (61%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR +LL +V D RVV I LA +L MR + RA+AQ T I LA+RLG+W L
Sbjct: 130 LRRLLLSIVQDLRVVPILLARQLAQMRVADKASEEQRRALAQLTRDIHAPLANRLGIWQL 189
Query: 139 KAELEDLCFAVLQPQIFRKM 158
K ELEDL F L+P +R++
Sbjct: 190 KWELEDLAFRDLEPDTYRRI 209
>gi|220935281|ref|YP_002514180.1| GTP diphosphokinase [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219996591|gb|ACL73193.1| GTP diphosphokinase [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 770
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 111/176 (63%), Gaps = 15/176 (8%)
Query: 236 KSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP-GMEVTLSSRLKSLYSIFS 294
+ SE ++ A++++++ + + E +E+ + T+ P G+E + R K +YSI+
Sbjct: 249 EPSEYRRVARLLEESRTERETYI--REFMER---LETALRPEGIEARVLGRPKHIYSIWR 303
Query: 295 KMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIV 354
KM RK + ++YD RA+RV+V D+ I CY++L +VH LW I EFDDYI
Sbjct: 304 KMERKQLDFEELYDLRAVRVIV-DR--------IPTCYTVLGVVHGLWPHIPQEFDDYIA 354
Query: 355 NPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSIS 410
NPK +GYQSLHTAV GP +EVQIRTQ M ++AE G+AAHW YKE G + Q++
Sbjct: 355 NPKDNGYQSLHTAVIGPRAKVVEVQIRTQAMDDFAELGVAAHWRYKEGGREDQAMG 410
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 15/162 (9%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVS-RLSYINQLLRRH-----RRIN 65
+T++A +L D D + + E FG+ VA LV V L+ + +R RRI
Sbjct: 95 ETLIATLLLDAFLDKRLTEARLREHFGEAVAALVRSVHWMLTLFDASMRLTPPGLARRIA 154
Query: 66 VN---------QGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKAR 116
+ G E+A LR +LL +V+D R VLIKLA R+ +R + P AR
Sbjct: 155 PGDSFKEEPPRESGAGPEQAERLRRLLLAVVEDVRAVLIKLAYRVQRLRLLATEPDDLAR 214
Query: 117 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A A+ETL ++ LA RLG+ LK E+EDL F +L+P +R++
Sbjct: 215 AYARETLEVFAPLAHRLGIGQLKWEMEDLSFRILEPSEYRRV 256
>gi|380513565|ref|ZP_09856972.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Xanthomonas sacchari NCPPB 4393]
Length = 718
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 93/151 (61%), Gaps = 11/151 (7%)
Query: 256 SLVACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALR 313
S VA E +E K++L G+ +S R K +YSI+ KM++K + ++YD RA+R
Sbjct: 209 SRVARERYIEAVKKILSKALAEQGLRAEISGRPKHIYSIWRKMQKKRLAFDQLYDLRAVR 268
Query: 314 VVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDG 373
V+V D + CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 269 VMVDD---------VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEG 319
Query: 374 SALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+EVQIRT MH AE G+AAHW YKE G
Sbjct: 320 RTIEVQIRTHDMHAQAELGVAAHWKYKEGGK 350
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 6/158 (3%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR +LL +V D RVV I LA +L MR P A+ RA+AQ T I LA+RLG+W L
Sbjct: 123 LRRLLLSIVQDLRVVPILLARQLAQMRVADKAPEAQRRALAQLTRDIHAPLANRLGIWQL 182
Query: 139 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESF 198
K ELEDL F L+P +R++ ++ R R Y + I+S ++ ++
Sbjct: 183 KWELEDLAFRHLEPDTYRRIAREVDESRVARER--YIEAVKKILSKALAEQGLRAE---I 237
Query: 199 TTFDEHVLSM-KDLLEAVVPFDILSDRRKRTKFLHDLA 235
+ +H+ S+ + + + + FD L D R + D+A
Sbjct: 238 SGRPKHIYSIWRKMQKKRLAFDQLYDLRAVRVMVDDVA 275
>gi|375091649|ref|ZP_09737938.1| RelA/SpoT family protein [Helcococcus kunzii ATCC 51366]
gi|374563171|gb|EHR34493.1| RelA/SpoT family protein [Helcococcus kunzii ATCC 51366]
Length = 719
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 88/134 (65%), Gaps = 9/134 (6%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ T++ R K +YSI++KM+++D I ++D A+RV+V D I CY++L I
Sbjct: 227 IKFTMTGRPKGIYSIYNKMKKQDTSIDNIFDLIAIRVIVKD---------INQCYAVLGI 277
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW PI G F DYI PKP+ YQSLHT V G G EVQIRT++MH+ AE G+A+HW
Sbjct: 278 VHNLWKPIPGRFKDYIAMPKPNFYQSLHTTVIGEKGQIFEVQIRTEEMHKNAEFGIASHW 337
Query: 398 LYKETGNKLQSISS 411
YKE K+ ++ +
Sbjct: 338 QYKEGKKKVSNLDN 351
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 90/161 (55%), Gaps = 12/161 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ AG++HDV++D + + +EFGDE+ LV GV++L N+ T
Sbjct: 62 ETICAGLMHDVLEDTDFTREEMAQEFGDEITALVDGVTKLK------------NLKYKTK 109
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +R M+L M +D RV++IKLADRLHNMRT+ K + A ETL I+ LA
Sbjct: 110 EETQIESIRKMVLAMANDIRVIIIKLADRLHNMRTLEYKDRDKQISTANETLEIYVPLAH 169
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
RLG+ ++K ELEDLC + P + + + S R ++
Sbjct: 170 RLGINSIKWELEDLCLRYIDPISYYSVAQQIDQKRSEREKI 210
>gi|330811209|ref|YP_004355671.1| GTP diphosphokinase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423698765|ref|ZP_17673255.1| GTP diphosphokinase [Pseudomonas fluorescens Q8r1-96]
gi|327379317|gb|AEA70667.1| GTP diphosphokinase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|387996645|gb|EIK57975.1| GTP diphosphokinase [Pseudomonas fluorescens Q8r1-96]
Length = 748
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVVADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKETGNKLQSISSMDESDI 417
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +L+ V + L + + FG VAKL+ GV R++ I+ L R ++ GT
Sbjct: 83 DSLVAAVLYRGVREGQIQLPVVSQRFGTVVAKLIDGVLRMAAISASL--SPRQSMVLGTQ 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G E +LR ML+ MVDD RV LIKLA+R +R + + K VA+E I+ LA
Sbjct: 141 GQVE--NLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRNRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPDQYKQI 225
>gi|226941695|ref|YP_002796769.1| RelA [Laribacter hongkongensis HLHK9]
gi|226716622|gb|ACO75760.1| RelA [Laribacter hongkongensis HLHK9]
Length = 736
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ ++ R K +YSI+ KMR+K + ++YD RA+RV+V DK + CY++L
Sbjct: 253 GVRADVAGRAKHIYSIWKKMRKKHLDFSELYDIRAVRVLV-DK--------VSDCYAVLG 303
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW PI GEFDDYI +PK + Y+SLHTAV GP LEVQIRT MHE+AE G+AAH
Sbjct: 304 MVHSLWQPIPGEFDDYIAHPKANDYKSLHTAVIGPQDKVLEVQIRTFDMHEHAEFGVAAH 363
Query: 397 WLYKETG 403
W YKE G
Sbjct: 364 WRYKEGG 370
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 74/127 (58%), Gaps = 4/127 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+ E+ G EVA LV GV+RL I + + + ++A +R MLL MV D R+
Sbjct: 100 LTEKMGKEVADLVEGVARLGRIAEFAGQSDAVTPEARA---QQAEAMRKMLLAMVADIRI 156
Query: 93 VLIKLADRLHNMRTIYALPPAKARA-VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 151
VLIKLA R M + +P + R +A+ET I+ LA+RLG+W +K ELEDL F L+
Sbjct: 157 VLIKLAWRTQTMHWLAKVPDEQVRRRIARETQEIFAPLANRLGVWQIKWELEDLAFRHLE 216
Query: 152 PQIFRKM 158
P ++K+
Sbjct: 217 PDNYKKI 223
>gi|389806042|ref|ZP_10203183.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter thiooxydans
LCS2]
gi|388446310|gb|EIM02351.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter thiooxydans
LCS2]
Length = 711
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 85/130 (65%), Gaps = 9/130 (6%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
+ G++ L+ R K +YSI+ KM+RK + +YD RA+RV+V +I CY+
Sbjct: 221 VAGIQAELAGRPKHIYSIWKKMQRKSLDFSDLYDIRAVRVLVD---------SITDCYAA 271
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L +VH LW + GEFDDYI PK +GYQSLHTAV GP+G LEVQIRT MH E G+A
Sbjct: 272 LGVVHALWPHLPGEFDDYIARPKANGYQSLHTAVIGPEGKTLEVQIRTHAMHRANELGVA 331
Query: 395 AHWLYKETGN 404
AHW YKE G+
Sbjct: 332 AHWRYKEGGS 341
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 53/83 (63%)
Query: 76 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 135
A LR +LL +V D RVV + LA +L MR ALP + +A+A+ T I LA+RLG+
Sbjct: 111 AEGLRRLLLAIVRDLRVVFVLLARQLARMRAAPALPEDERQALARLTRDIHAPLANRLGI 170
Query: 136 WALKAELEDLCFAVLQPQIFRKM 158
W LK ELEDL F LQP +R++
Sbjct: 171 WQLKWELEDLAFRYLQPDTYRRI 193
>gi|359461025|ref|ZP_09249588.1| ppGpp 3'-pyrophosphohydrolase [Acaryochloris sp. CCMEE 5410]
Length = 732
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D + +IE EFG EV +LV GV++LS N + R
Sbjct: 62 IAAGFLHDVVEDTDVTPETIEAEFGLEVRQLVEGVTKLSKFNFSTKTER----------- 110
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
EA + R M L M D RV+++KLADRLHNMRT+ LPPAK R +AQET ++ LA+RL
Sbjct: 111 -EAENFRRMFLAMAQDIRVIVVKLADRLHNMRTLEHLPPAKQRRIAQETRDVFAPLANRL 169
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G+W K ELEDL F L+P +RKM+ +A + R
Sbjct: 170 GIWRFKWELEDLAFKYLEPDTYRKMQQLVADKRTDR 205
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 75/124 (60%), Gaps = 9/124 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K L+SI KM R+ H++YD A+RV+V + CY L +VH
Sbjct: 230 ISGRPKHLFSISQKMERQQKEFHEIYDVAAVRVIVKTN---------EECYRALAVVHDC 280
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ PI G F DYI PK + YQSLHT V G G LEVQIRT+ MH AE+G+AAHW YKE
Sbjct: 281 FRPIPGRFKDYIGLPKSNRYQSLHTVVIGLGGRPLEVQIRTEAMHHIAEYGIAAHWKYKE 340
Query: 402 TGNK 405
+ N+
Sbjct: 341 SSNQ 344
>gi|53804046|ref|YP_114354.1| GTP pyrophosphokinase [Methylococcus capsulatus str. Bath]
gi|53757807|gb|AAU92098.1| GTP pyrophosphokinase [Methylococcus capsulatus str. Bath]
Length = 718
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 111/214 (51%), Gaps = 25/214 (11%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K LYSI+ KM RK + +YD A+RV V +I CY++L
Sbjct: 237 GIDARVSGRPKHLYSIWKKMERKHAQLADLYDLLAVRVTVD---------SIPTCYTVLG 287
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH LW I EFDDYI NPK +GYQSLHT V GPD +E+QIRTQ MHE+AE+G+AAH
Sbjct: 288 AVHGLWPHIPKEFDDYIANPKDNGYQSLHTVVIGPDDRPVEIQIRTQAMHEFAEYGVAAH 347
Query: 397 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGS 456
W YKE G + ++ D S L + D+ + L Q + G + +
Sbjct: 348 WRYKEGGGQ---DAAFDRSIASLRRLLESEEDNDS-----LLQDFREEPFGDAIFVLTPR 399
Query: 457 NLLAAVIIRVEKGGRELLVAVSFGLAASEVVADR 490
A +IR+ KG V F A V R
Sbjct: 400 ----AQVIRLAKGS----TPVDFAYAIHSEVGHR 425
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
I + F +E +L+ V+ L+ N+ Q G E+A LR MLL +V+D R
Sbjct: 90 IRDHFEEETVRLLEKVNWLNTFNEY--------SLQDNPGPEQAELLRRMLLSVVNDVRA 141
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL++LA R+ MR + ++A+ETL ++ LA RLG+ LK ELEDL F L P
Sbjct: 142 VLVRLAYRVQRMRILKYQDSDVRESIARETLELYAPLAHRLGVGQLKWELEDLSFRYLHP 201
Query: 153 QIFRKMRADLASMWSPR 169
+R + L + + R
Sbjct: 202 DEYRTLAKSLNTNRAER 218
>gi|334131928|ref|ZP_08505690.1| GTP pyrophosphokinase [Methyloversatilis universalis FAM5]
gi|333443401|gb|EGK71366.1| GTP pyrophosphokinase [Methyloversatilis universalis FAM5]
Length = 730
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 93/149 (62%), Gaps = 17/149 (11%)
Query: 261 EEALEKELLISTSYI--------PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 312
E+ +E+E I+ S G++ + R K +YSI++KMR K + +VYD RAL
Sbjct: 222 EKRVEREAFIAESMARLKAELQAAGIQADIQGRPKHIYSIWNKMRAKKLEFSEVYDVRAL 281
Query: 313 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 372
RV+V +++ CY L +VH+LW P+ EFDDYI PK + YQSLHTAV PD
Sbjct: 282 RVLV---------ESVRDCYGALGVVHQLWHPLPREFDDYIAQPKGNNYQSLHTAVIAPD 332
Query: 373 GSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
G +LEVQIRT MH +AE G+AAHW YKE
Sbjct: 333 GRSLEVQIRTWDMHRHAEMGVAAHWRYKE 361
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Query: 19 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 78
LH+V +DA E + + +G VA+LVAG+ RL + + R H V G +A
Sbjct: 80 LHEVQEDAGEQIATA---YGPAVAELVAGLQRLDNLRLITRAHASQQVAGQDSGGNQAEV 136
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR M+L MV D RVV+++LA R+ +R + A P +A+E+L I+ LA+RLG+W L
Sbjct: 137 LRKMVLAMVADVRVVMLRLASRVQTLRWLTAHPNDDRLQLARESLDIYAPLANRLGVWQL 196
Query: 139 KAELEDLCFAVLQPQIFRKM 158
K ELEDL F L+P ++++
Sbjct: 197 KWELEDLSFRFLEPDTYKRI 216
>gi|440733401|ref|ZP_20913141.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Xanthomonas translucens DAR61454]
gi|440362375|gb|ELP99574.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Xanthomonas translucens DAR61454]
Length = 718
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 93/151 (61%), Gaps = 11/151 (7%)
Query: 256 SLVACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALR 313
S VA E +E K++L G+ +S R K +YSI+ KM++K + ++YD RA+R
Sbjct: 209 SRVARERYIEAVKKILSKALSEQGLRAEISGRPKHIYSIWRKMQKKRLAFDQLYDLRAVR 268
Query: 314 VVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDG 373
V+V D + CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 269 VMVDD---------VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEG 319
Query: 374 SALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+EVQIRT MH AE G+AAHW YKE G
Sbjct: 320 RTIEVQIRTHDMHAQAELGVAAHWKYKEGGK 350
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 10/160 (6%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR +LL +V D RVV I LA +L MR LP A+ RA+AQ T I LA+RLG+W L
Sbjct: 123 LRRLLLSIVQDLRVVPILLARQLAKMRVADKLPEAQRRALAQLTRDIHAPLANRLGIWQL 182
Query: 139 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI--VSSPPLDERTASDDE 196
K ELEDL F L+P +R++ ++ +RV R I + + S L E+ +
Sbjct: 183 KWELEDLAFRHLEPDTYRRIAREVDE-----SRVARERYIEAVKKILSKALSEQGLRAE- 236
Query: 197 SFTTFDEHVLSM-KDLLEAVVPFDILSDRRKRTKFLHDLA 235
+ +H+ S+ + + + + FD L D R + D+A
Sbjct: 237 -ISGRPKHIYSIWRKMQKKRLAFDQLYDLRAVRVMVDDVA 275
>gi|408822202|ref|ZP_11207092.1| RelA/SpoT family protein [Pseudomonas geniculata N1]
Length = 706
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 89/139 (64%), Gaps = 9/139 (6%)
Query: 266 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 325
K++L G++ +S R K +YSI+ KM++K + ++YD RA+RV+V D
Sbjct: 208 KKVLSRELVAQGIKAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD------- 260
Query: 326 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 385
+ CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +M
Sbjct: 261 --VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEM 318
Query: 386 HEYAEHGLAAHWLYKETGN 404
H AE G+AAHW YKE G
Sbjct: 319 HSQAELGVAAHWKYKEGGK 337
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 6/158 (3%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR +LL ++ D RVV I LA +L MR L + RA+AQ T I LA+RLG+W L
Sbjct: 110 LRRLLLAIIRDLRVVPILLARQLARMRAADKLDDEQRRALAQLTRDIHAPLANRLGIWQL 169
Query: 139 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESF 198
K ELEDL F L+P+ +R++ ++ R R Y + ++S + + ++
Sbjct: 170 KWELEDLAFRHLEPETYRRIAREVDETRIARER--YVENVKKVLSRELVAQGIKAE---V 224
Query: 199 TTFDEHVLSM-KDLLEAVVPFDILSDRRKRTKFLHDLA 235
+ +H+ S+ + + + + FD L D R + D+A
Sbjct: 225 SGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDDVA 262
>gi|344208530|ref|YP_004793671.1| RelA/SpoT family protein [Stenotrophomonas maltophilia JV3]
gi|343779892|gb|AEM52445.1| RelA/SpoT family protein [Stenotrophomonas maltophilia JV3]
Length = 718
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 231 GIKAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD---------VAACYAALG 281
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +MH AE G+AAH
Sbjct: 282 VVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEMHSQAELGVAAH 341
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 342 WKYKEGGK 349
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 51/80 (63%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR +LL ++ D RVV I LA +L MR L + RA+AQ T I LA+RLG+W L
Sbjct: 122 LRRLLLAIIRDLRVVPILLARQLARMRAADKLDEEQRRALAQLTRDIHAPLANRLGIWQL 181
Query: 139 KAELEDLCFAVLQPQIFRKM 158
K ELEDL F L+P+ +R++
Sbjct: 182 KWELEDLAFRHLEPETYRRI 201
>gi|254283985|ref|ZP_04958953.1| GTP pyrophosphokinase [gamma proteobacterium NOR51-B]
gi|219680188|gb|EED36537.1| GTP pyrophosphokinase [gamma proteobacterium NOR51-B]
Length = 737
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 84/124 (67%), Gaps = 9/124 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ LS R K +YSI+ KM+RK +G +VYD RALR++V + + CY L
Sbjct: 250 GVDYELSGRAKHIYSIWRKMQRKGIGFSQVYDIRALRILV---------DSTKDCYHTLG 300
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH +W I EFDDY+ +PK +GY+SLHTAV GP+G LEVQIRT +MHE AE G+ AH
Sbjct: 301 IVHSIWRNIPNEFDDYVASPKENGYRSLHTAVIGPEGKILEVQIRTHQMHEEAELGVCAH 360
Query: 397 WLYK 400
W YK
Sbjct: 361 WRYK 364
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 8 KRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN 67
++ D +VA +L+ V + SL +++ FG V L+ GV R++ +++L R + +
Sbjct: 73 RQGGDALVAAMLYRAVREQRLSLDVVQKSFGTGVCGLLDGVLRMAAVSEL-----RGDSD 127
Query: 68 QGTLGHEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
LG + ++R ML+ MVDD RV L+KLA+R MR + P + +AQE +
Sbjct: 128 APVLGQSSSPNTNVRQMLVAMVDDVRVALLKLAERTVAMRVLRTALPEQRIPIAQEVYDV 187
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
+ LA RLG+ LK ELED F L +R++
Sbjct: 188 YAPLAHRLGIGHLKWELEDFAFRYLHEDAYRRI 220
>gi|56479168|ref|YP_160757.1| GTP pyrophosphokinase [Aromatoleum aromaticum EbN1]
gi|56315211|emb|CAI09856.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)
[Aromatoleum aromaticum EbN1]
Length = 733
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 87/125 (69%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI++KMR K + +VYD RALRV+VG+ ++ CY++L
Sbjct: 246 GIKAEVYGRPKHIYSIYNKMRAKRLDFSQVYDIRALRVLVGN---------VRDCYTVLG 296
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IV+++W PI EFDDYI PK + YQSLHTAV DG A+EVQIRT MH++AE G+AAH
Sbjct: 297 IVNQIWQPIGQEFDDYITKPKGNNYQSLHTAVLAGDGRAVEVQIRTHDMHKHAELGVAAH 356
Query: 397 WLYKE 401
W YKE
Sbjct: 357 WRYKE 361
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 89/157 (56%), Gaps = 3/157 (1%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
LI +S + V+T VA +L V D + + ++ FGD VA+LV G+ +L+ + +LL R
Sbjct: 63 LIAASLRLDVETRVAALLFAVGDYGEDPIETVTARFGDGVARLVEGLRKLNGL-RLLTRM 121
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 121
E LR MLL MV+D RVVL++LA R +R VA+E
Sbjct: 122 TATATAPEIRAQTEV--LRKMLLAMVEDIRVVLLRLASRTQTLRYFTEQKGEIRTDVARE 179
Query: 122 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
+L I+ LA+RLG+W LK ELEDL F L+P+ ++++
Sbjct: 180 SLDIYAPLANRLGVWQLKWELEDLSFRFLEPETYKRI 216
>gi|300113863|ref|YP_003760438.1| (p)ppGpp synthetase I [Nitrosococcus watsonii C-113]
gi|299539800|gb|ADJ28117.1| (p)ppGpp synthetase I, SpoT/RelA [Nitrosococcus watsonii C-113]
Length = 714
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K LYSI+ KM+ K++ H+++D A RV+V D ++ CY+ L
Sbjct: 226 GIQGQISGRPKHLYSIWKKMQAKNLAFHQLFDVHAFRVIVVD---------VRDCYATLS 276
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW PI EFDDYI +PKP+GY+SLHTAV P G +E+QIR+ +MHE +E G+A+H
Sbjct: 277 LVHTLWTPIPEEFDDYIAHPKPNGYRSLHTAVLDPQGKPMEIQIRSLQMHEESELGVASH 336
Query: 397 WLYKE 401
W YKE
Sbjct: 337 WRYKE 341
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 8/148 (5%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+T +AG+L ++ + + + +L+ G RL+ + +H R N +
Sbjct: 57 TETQIAGLLLPAMEAGLLKREIVTKNLAPTITRLLRGSERLAVL-----KHYRNNSEKDP 111
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +A LR MLL +V+DPRVVL++LAD L+ +R A + +AQETL I+ LA
Sbjct: 112 I---QAEKLRKMLLAIVEDPRVVLVRLADHLYRLRNANNAAIATRQTLAQETLDIFAPLA 168
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK ELEDL LQPQI++++
Sbjct: 169 NRLGIWQLKWELEDLALRYLQPQIYQRL 196
>gi|254522748|ref|ZP_05134803.1| RelA/SpoT family protein [Stenotrophomonas sp. SKA14]
gi|219720339|gb|EED38864.1| RelA/SpoT family protein [Stenotrophomonas sp. SKA14]
Length = 718
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 89/139 (64%), Gaps = 9/139 (6%)
Query: 266 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 325
K++L G++ +S R K +YSI+ KM++K + ++YD RA+RV+V D
Sbjct: 220 KKVLSRELVAQGIKAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD------- 272
Query: 326 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 385
+ CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +M
Sbjct: 273 --VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEM 330
Query: 386 HEYAEHGLAAHWLYKETGN 404
H AE G+AAHW YKE G
Sbjct: 331 HSQAELGVAAHWKYKEGGK 349
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 51/80 (63%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR +LL ++ D RVV I LA +L MR L + RA+AQ T I LA+RLG+W L
Sbjct: 122 LRRLLLAIIRDLRVVPILLARQLARMRAADKLDDEQRRALAQLTRDIHAPLANRLGIWQL 181
Query: 139 KAELEDLCFAVLQPQIFRKM 158
K ELEDL F L+P+ +R++
Sbjct: 182 KWELEDLAFRHLEPETYRRI 201
>gi|256822070|ref|YP_003146033.1| (p)ppGpp synthetase I SpoT/RelA [Kangiella koreensis DSM 16069]
gi|256795609|gb|ACV26265.1| (p)ppGpp synthetase I, SpoT/RelA [Kangiella koreensis DSM 16069]
Length = 736
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R+K +YSI+ KM RK VG ++YD RA+R++V +Q CY L IVH
Sbjct: 253 VSGRVKHIYSIWKKMTRKKVGFEEIYDVRAVRILV---------ERVQDCYGALGIVHGE 303
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W I EFDDY+ PK +GY+S+HTAV GP+G LE+QIRT +MHE +E G+AAHW YKE
Sbjct: 304 WQHIPKEFDDYVATPKENGYRSIHTAVVGPEGKILEIQIRTFQMHEESEKGIAAHWAYKE 363
Query: 402 TGN 404
N
Sbjct: 364 GAN 366
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 83/160 (51%), Gaps = 6/160 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DT+ A IL V + +I+++ G +A LV G ++ + L + N Q
Sbjct: 78 DTLTAAILLPSVIAGSVKIETIKDKVGSTIAGLVEGAGQMEAMRSLQQETGAENDQQ--- 134
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ LR MLLGMV+D RVVL+KLADR+ ++R I A+ET I+ LA+
Sbjct: 135 ---QVESLRKMLLGMVNDARVVLLKLADRVVSLRHIKDTNRETQLTFARETKNIFAPLAN 191
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
RLG+ LK ELEDL F L+P+ + + +L R R
Sbjct: 192 RLGIGQLKWELEDLSFRYLEPEAYLSIAKNLKEKRVDRER 231
>gi|334143852|ref|YP_004537008.1| (p)ppGpp synthetase I SpoT/RelA [Thioalkalimicrobium cyclicum ALM1]
gi|333964763|gb|AEG31529.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalimicrobium cyclicum
ALM1]
Length = 727
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 95/158 (60%), Gaps = 12/158 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E ++ R K +YSI+ KM RK + +YD RALR+ V D + CY L
Sbjct: 227 GIEARVTGRPKHIYSIWKKMSRKTQSLDSLYDLRALRIYVKD---------VTECYRCLS 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH W I EFDDYI +PK +GYQS+HT V GP+G +E+QIRTQ+MH++AE+G+AAH
Sbjct: 278 LVHEKWNFIRDEFDDYITSPKDNGYQSIHTVVIGPEGKTVEIQIRTQEMHQHAEYGIAAH 337
Query: 397 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 434
W YKE G + + E+ I + L + DD D
Sbjct: 338 WKYKEGG---KGYDARLEASINSMRQLLEHRDDAEVFD 372
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEA---NDLRVMLLGMVDD 89
+ + F + KL+ G+ RL+ + H +A LR MLL M D
Sbjct: 80 LAKRFDPQSVKLIEGIRRLNQFKEF-----------DPSTHSDAVQTERLRQMLLAMTSD 128
Query: 90 PRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 149
R++++KL R+ +R + P + +A ET LI+ LA+RLG+ LK ELEDL F
Sbjct: 129 IRMMVVKLGYRVARLRDLKNEPEPVRKQIAAETQLIFAPLANRLGIAQLKWELEDLSFRF 188
Query: 150 LQPQIFRKMRADLA 163
L+P++++K+ +LA
Sbjct: 189 LEPKLYKKIATELA 202
>gi|358637763|dbj|BAL25060.1| GTP pyrophosphokinase [Azoarcus sp. KH32C]
Length = 738
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 92/138 (66%), Gaps = 11/138 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI++KMR K + +VYD RALRV+V + ++ CY++L
Sbjct: 246 GIKAEVYGRPKHIYSIYNKMRAKRLDFSQVYDIRALRVLVAE---------VRDCYTVLG 296
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IV+++W PI EFDDYI NPK + YQSLHTAV DG ALEVQIRT MH++AE G+AAH
Sbjct: 297 IVNQIWQPIAQEFDDYISNPKGNNYQSLHTAVLAGDGRALEVQIRTYDMHKHAELGVAAH 356
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE K + S DE
Sbjct: 357 WRYKE--GKGHAGSEYDE 372
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR MLL MV+D RVVL++LA R +R VA+E+L I+ LA+RLG+W L
Sbjct: 137 LRKMLLAMVEDIRVVLLRLASRTQTLRYFTEHNVEVRVDVARESLDIYAPLANRLGVWQL 196
Query: 139 KAELEDLCFAVLQPQIFRKM 158
K ELEDL F L+P ++++
Sbjct: 197 KWELEDLSFRFLEPDTYKRI 216
>gi|347532608|ref|YP_004839371.1| (p)ppGpp synthetase I SpoT/RelA [Roseburia hominis A2-183]
gi|345502756|gb|AEN97439.1| (p)ppGpp synthetase I, SpoT/RelA [Roseburia hominis A2-183]
Length = 788
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 181/402 (45%), Gaps = 115/402 (28%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ AG+LHDV++D + I+EEF +EV LV GV++L R +++ +
Sbjct: 100 ETIAAGLLHDVLEDTVMTADEIKEEFSEEVLLLVDGVTKL----------RHLHLTDNSH 149
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLH----NMRTIYALPPAKARAVAQETLLIWC 127
H++ + + A+RL N+R ++ A+A++ +I
Sbjct: 150 NHDQKD------------------RSAERLEMQAENLRKMFL-------AMAKDIRVILI 184
Query: 128 SLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP-RNRVGYSRRITTIVSSPP 186
LA RL + L + + QI ++ + ++ P R+G S+
Sbjct: 185 KLADRL------HNMRTLKYQSKEAQI--RIARETQEIYCPIAQRLGISKI--------- 227
Query: 187 LDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS--DRRK--RTKFLHDLAKSSEAQK 242
+ DD LS+K LE +D++ D+RK R ++ L + A
Sbjct: 228 ---KIELDD----------LSLK-YLEPEAYYDLVRQIDQRKSVRDDYVQSLVEEVRAHI 273
Query: 243 KAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVG 302
KA AGI + R K +SI+ KM +D
Sbjct: 274 KA-----AGIV--------------------------AEIEGRAKHFFSIYKKMVNQDKT 302
Query: 303 IHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQ 362
+ ++YD A+R++V +++ CY+ L ++H ++ PI G F DYI PKP+ YQ
Sbjct: 303 LDQIYDLFAIRIIVD---------SVKDCYAALGVIHEMYKPIPGRFKDYIAMPKPNMYQ 353
Query: 363 SLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
SLHT + GP G E+QIRT +MH AE+G+AAHW YKE N
Sbjct: 354 SLHTTLIGPTGQPFEIQIRTYEMHRTAEYGIAAHWKYKEASN 395
>gi|388456559|ref|ZP_10138854.1| GTP pyrophosphokinase [Fluoribacter dumoffii Tex-KL]
Length = 734
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 83/121 (68%), Gaps = 9/121 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K + SI+ KM RK+V + ++YDA A+RV+V + P CY +L +VH LW
Sbjct: 257 RSKHINSIYKKMTRKNVSLDEIYDATAVRVLVDTQ------PQ---CYEVLGMVHTLWKQ 307
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I EFDDYI+NPK +GYQSLHTAVQGP+G EVQIRT MH+ AE G+AAHW YKE G
Sbjct: 308 IPAEFDDYIINPKSNGYQSLHTAVQGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKEGGF 367
Query: 405 K 405
K
Sbjct: 368 K 368
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 92/160 (57%), Gaps = 6/160 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A I+ + V A S+ + E+ G +AKLV G+ R+S + H + +
Sbjct: 78 ETLAAAIIFENVHYADLSIDDVAEQLGPNIAKLVKGIERMSAM------HSFQGLGKYPQ 131
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++ +++R MLL MVDD RVVLIKLA+RL +R+ L + +A ET+ I+ LA+
Sbjct: 132 NKQQIDNIRKMLLAMVDDVRVVLIKLAERLCVLRSATHLSEELRKQLATETMEIYAPLAN 191
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
RLG+ A+K E+EDL F L P+ ++ + L + R++
Sbjct: 192 RLGIGAIKWEMEDLAFRHLHPEDYKAIAKGLKAKRLERDQ 231
>gi|74317776|ref|YP_315516.1| GTP diphosphokinase, RelA/SpoT protein [Thiobacillus denitrificans
ATCC 25259]
gi|74057271|gb|AAZ97711.1| GTP diphosphokinase, RelA/SpoT protein [Thiobacillus denitrificans
ATCC 25259]
Length = 722
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 87/129 (67%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E ++ R K + SI +KMRRK + ++YD RA+RV+V + CY++L
Sbjct: 245 GIEAEVTGRPKHIASIVNKMRRKHLSFEQLYDIRAVRVLVRQEID---------CYTVLG 295
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW PI GEFDDYI PK + Y+SLHTAV GP+ ALEVQIRT MH +AE G+AAH
Sbjct: 296 LVHNLWQPIPGEFDDYISQPKSNDYRSLHTAVIGPEDRALEVQIRTFDMHRHAELGVAAH 355
Query: 397 WLYKETGNK 405
W YKE+G +
Sbjct: 356 WRYKESGKQ 364
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 18/170 (10%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
LI + K D V A +LH + D E ++E F + A+L GV+ ++ I L
Sbjct: 59 LIAAELKVGADAVAAALLHACLGDEAE----MDERF-NSAAQLARGVAAMARIESLAA-- 111
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPP--------- 112
++ H + LR M+L MV+D RVVL+KLA+R H +R + P
Sbjct: 112 --TTTDKRIDPHAQLEALRQMVLAMVEDIRVVLLKLAERTHALRCAASPAPEGDDPDERA 169
Query: 113 AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
A A+ Q+ ++ LA+RLG+W +K E+ED F L+P+ +R + A L
Sbjct: 170 ALREALGQQARELFAPLANRLGVWQIKWEMEDWAFRYLEPETYRTIAAQL 219
>gi|410696071|gb|AFV75139.1| (p)ppGpp synthetase, RelA/SpoT family [Thermus oshimai JL-2]
Length = 732
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 108/178 (60%), Gaps = 14/178 (7%)
Query: 256 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
++ +EALEK+ L+ I G EVT R K LYSI+ KM R+ + ++YD A+RV+
Sbjct: 228 AMARLKEALEKDELLQAQ-IQGFEVT--GRPKHLYSIWKKMEREGKALEQIYDLLAVRVI 284
Query: 316 VGDK-NGTLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP 371
+ K + T ++ Q CY +L +VH LW PI G DYI PKP+GYQSLHT V
Sbjct: 285 LDPKPSATEEARSLREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIAL 344
Query: 372 DGSALEVQIRTQKMHEYAEHGLAAHWLYK-------ETGNKLQSISSMDESDIEASSS 422
+G LEVQIRT++MH+ AE+G+AAHWLYK E ++ + S+ E E SSS
Sbjct: 345 EGLPLEVQIRTREMHKVAEYGIAAHWLYKEGLTDPEEVKRRVSWLKSIQEWQQEFSSS 402
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 93/149 (62%), Gaps = 13/149 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+TV+AG+LHDVV+D + +E FG V ++V G +++S + ++ L
Sbjct: 73 ETVMAGLLHDVVEDCGVAPEELERRFGAGVRRIVEGETKVSKLYKM-----------ANL 121
Query: 72 GHEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
EE A DLR M + M +D R++++KLADRLHN+RT+ +PP K R +AQETL I+ L
Sbjct: 122 EGEERRAEDLRQMFIAMAEDVRIIIVKLADRLHNLRTLEHMPPEKQRRIAQETLEIYAPL 181
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A RLG+ +K ELEDL F L P+ ++ +
Sbjct: 182 AHRLGMGQIKWELEDLSFRYLHPEAYQSL 210
>gi|194366871|ref|YP_002029481.1| RelA/SpoT family protein [Stenotrophomonas maltophilia R551-3]
gi|194349675|gb|ACF52798.1| RelA/SpoT family protein [Stenotrophomonas maltophilia R551-3]
Length = 718
Score = 135 bits (340), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 88/139 (63%), Gaps = 9/139 (6%)
Query: 266 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 325
K++L G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D
Sbjct: 220 KKVLSRELVAQGIRAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD------- 272
Query: 326 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 385
+ CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +M
Sbjct: 273 --VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEM 330
Query: 386 HEYAEHGLAAHWLYKETGN 404
H AE G+AAHW YKE G
Sbjct: 331 HSQAELGVAAHWKYKEGGK 349
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 51/80 (63%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR +LL ++ D RVV I LA +L MR L + RA+AQ T I LA+RLG+W L
Sbjct: 122 LRRLLLAIIRDLRVVPILLARQLARMRAADKLDDEQRRALAQLTRDIHAPLANRLGIWQL 181
Query: 139 KAELEDLCFAVLQPQIFRKM 158
K ELEDL F L+P+ +R++
Sbjct: 182 KWELEDLAFRHLEPETYRRI 201
>gi|384245518|gb|EIE19011.1| hypothetical protein COCSUDRAFT_67926 [Coccomyxa subellipsoidea
C-169]
Length = 700
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 94/153 (61%), Gaps = 16/153 (10%)
Query: 260 CEEALEK-------ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 312
CEE+L++ + L G+ LS R K+L+ ++ KM K G+ +VYD RAL
Sbjct: 349 CEESLQRGSIEANLDQLKGRLAQTGIRGDLSGRPKNLWGVYRKMCAKGYGLDQVYDVRAL 408
Query: 313 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 372
RVVV K+ CY +L VHRLW P++G F DYI + K +GYQSLHT V G D
Sbjct: 409 RVVVDTKSD---------CYEVLREVHRLWTPVEGRFKDYIRHKKDNGYQSLHTVVLGSD 459
Query: 373 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
G +EVQIRTQKMH AE+G+AAHW YKE+ +
Sbjct: 460 GVPMEVQIRTQKMHWIAEYGVAAHWRYKESAAR 492
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 66/141 (46%), Gaps = 22/141 (15%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+ + A +LH V+D + + + EVA + H+ + QG +
Sbjct: 221 ECIAAALLHSVLDSSMLTEEKLRMSMCAEVADTM---------------HKALVEAQGGI 265
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E + MLL M D P VLI LAD L MR A A E + ++ LA+
Sbjct: 266 SGELHASFQGMLLAMQDVP-AVLIVLADSLQAMRA------KPTAAAAAEAMGVFAPLAN 318
Query: 132 RLGLWALKAELEDLCFAVLQP 152
RLG+W++KA+LEDL F VL P
Sbjct: 319 RLGVWSIKADLEDLAFMVLHP 339
>gi|456734351|gb|EMF59167.1| GTP pyrophosphokinase [Stenotrophomonas maltophilia EPM1]
Length = 677
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 190 GIHAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD---------VAACYAALG 240
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +MH AE G+AAH
Sbjct: 241 VVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEMHSQAELGVAAH 300
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 301 WKYKEGGK 308
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 51/80 (63%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR +LL ++ D RVV I LA +L MR L + RA+AQ T I LA+RLG+W L
Sbjct: 81 LRRLLLAIIRDLRVVPILLARQLARMRAADKLDDEQRRALAQLTRDIHAPLANRLGIWQL 140
Query: 139 KAELEDLCFAVLQPQIFRKM 158
K ELEDL F L+P+ +R++
Sbjct: 141 KWELEDLAFRHLEPETYRRI 160
>gi|153872438|ref|ZP_02001331.1| RelA/SpoT family protein [Beggiatoa sp. PS]
gi|152071096|gb|EDN68669.1| RelA/SpoT family protein [Beggiatoa sp. PS]
Length = 740
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 88/139 (63%), Gaps = 14/139 (10%)
Query: 263 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 322
+L K LL S ++ +S R K LYSI+ KM+RK++G +++D RA+RV+V
Sbjct: 240 SLSKALLKS-----NIKADISGRPKHLYSIWHKMQRKNLGFEQIFDVRAVRVLVN----- 289
Query: 323 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 382
I CY +L I+H LW P+ EFDDYI N K + YQSLHTAV GP+ EVQIRT
Sbjct: 290 ----TINECYMVLGIIHNLWQPLRNEFDDYIANSKSNNYQSLHTAVIGPEQKIFEVQIRT 345
Query: 383 QKMHEYAEHGLAAHWLYKE 401
MH +AE G+A+HW YKE
Sbjct: 346 HSMHHHAEFGVASHWRYKE 364
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 103/185 (55%), Gaps = 11/185 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+ ++A ILHDV + I++ FG +V +L+ GV+++ I +L +I +N
Sbjct: 78 EVLIAAILHDVSFEQQIRPDDIKKRFGIKVKRLIDGVAKMKVIEELNDNSDKI-INTKN- 135
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ LR MLL M +D RVVLIKLA+RL MR + P K + +A+ETL ++ LA+
Sbjct: 136 ---QIESLRKMLLAMAEDVRVVLIKLAERLDKMRLLRHQPVEKQQRMARETLDLFAPLAN 192
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIVSSPPLDE 189
RLG+W +K ELEDL L+P I++KM A + R +R Y R++ +S L
Sbjct: 193 RLGIWQIKWELEDLSLRYLEPDIYQKM----AQLLDERRVDRENYIRQVMASLSKALLKS 248
Query: 190 RTASD 194
+D
Sbjct: 249 NIKAD 253
>gi|190575543|ref|YP_001973388.1| GTP pyrophosphokinase [Stenotrophomonas maltophilia K279a]
gi|190013465|emb|CAQ47100.1| putative GTP pyrophosphokinase [Stenotrophomonas maltophilia K279a]
Length = 718
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 231 GIHAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD---------VAACYAALG 281
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +MH AE G+AAH
Sbjct: 282 VVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEMHSQAELGVAAH 341
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 342 WKYKEGGK 349
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 51/80 (63%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR +LL ++ D RVV I LA +L MR L + RA+AQ T I LA+RLG+W L
Sbjct: 122 LRRLLLAIIRDLRVVPILLARQLARMRAADKLDDEQRRAMAQLTRDIHAPLANRLGIWQL 181
Query: 139 KAELEDLCFAVLQPQIFRKM 158
K ELEDL F L+P+ +R++
Sbjct: 182 KWELEDLAFRHLEPETYRRI 201
>gi|424669853|ref|ZP_18106878.1| RelA/SpoT family protein [Stenotrophomonas maltophilia Ab55555]
gi|401071924|gb|EJP80435.1| RelA/SpoT family protein [Stenotrophomonas maltophilia Ab55555]
Length = 706
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 219 GIHAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD---------VAACYAALG 269
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +MH AE G+AAH
Sbjct: 270 VVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEMHSQAELGVAAH 329
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 330 WKYKEGGK 337
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 51/80 (63%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR +LL ++ D RVV I LA +L MR L + RA+AQ T I LA+RLG+W L
Sbjct: 110 LRRLLLAIIRDLRVVPILLARQLARMRAADKLDDEQRRALAQLTRDIHAPLANRLGIWQL 169
Query: 139 KAELEDLCFAVLQPQIFRKM 158
K ELEDL F L+P+ +R++
Sbjct: 170 KWELEDLAFRHLEPETYRRI 189
>gi|386719610|ref|YP_006185936.1| GTP pyrophosphokinase [Stenotrophomonas maltophilia D457]
gi|384079172|emb|CCH13770.1| GTP pyrophosphokinase [Stenotrophomonas maltophilia D457]
Length = 677
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 88/139 (63%), Gaps = 9/139 (6%)
Query: 266 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 325
K++L G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D
Sbjct: 179 KKVLSRELVAQGIRAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD------- 231
Query: 326 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 385
+ CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +M
Sbjct: 232 --VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEM 289
Query: 386 HEYAEHGLAAHWLYKETGN 404
H AE G+AAHW YKE G
Sbjct: 290 HSQAELGVAAHWKYKEGGK 308
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 51/80 (63%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR +LL ++ D RVV I LA +L MR L + RA+AQ T I LA+RLG+W L
Sbjct: 81 LRRLLLAIIRDLRVVPILLARQLARMRAADKLDDEQRRALAQLTRDIHAPLANRLGIWQL 140
Query: 139 KAELEDLCFAVLQPQIFRKM 158
K ELEDL F L+P+ +R++
Sbjct: 141 KWELEDLAFRHLEPETYRRI 160
>gi|309792557|ref|ZP_07687019.1| RelA/SpoT family protein [Oscillochloris trichoides DG-6]
gi|308225371|gb|EFO79137.1| RelA/SpoT family protein [Oscillochloris trichoides DG6]
Length = 809
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 91/140 (65%), Gaps = 12/140 (8%)
Query: 262 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 321
+ALEKE G+ +S R K +YSI+ KM RK + + ++YD A+RV++ +++
Sbjct: 304 DALEKE---------GISAQVSGRPKHIYSIWRKMDRKGLPLERIYDQLAVRVIIQERDP 354
Query: 322 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 381
A+ CY +L +VH LW P+ EFDDYI PK S YQSLHT V P G+ EVQIR
Sbjct: 355 ER---AVGICYRVLGVVHMLWTPVLSEFDDYIAVPKESSYQSLHTTVLIPGGTPCEVQIR 411
Query: 382 TQKMHEYAEHGLAAHWLYKE 401
T++MH+ AEHG+AAHW YKE
Sbjct: 412 TEEMHQIAEHGIAAHWRYKE 431
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 93/161 (57%), Gaps = 12/161 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+++ A +LHDVV+D L + +F +A LV GV++LS + T
Sbjct: 146 ESIAAALLHDVVEDTGVQLDLVRNQFNGCIAHLVDGVTKLS------------GLENKTK 193
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A R +++ DDPRV+LIKLADRLHNMRT+ A PP K R VA+ETL I+ LA
Sbjct: 194 EELQAGSYRKLIIATADDPRVILIKLADRLHNMRTLGATPPHKQRRVARETLDIYAPLAH 253
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
RLG+W +K+ELEDL F + P ++++ L R R+
Sbjct: 254 RLGMWQVKSELEDLAFKAMNPDRYQEIAQGLTLRKEARERI 294
>gi|325923889|ref|ZP_08185489.1| (p)ppGpp synthetase, RelA/SpoT family [Xanthomonas gardneri ATCC
19865]
gi|325545625|gb|EGD16879.1| (p)ppGpp synthetase, RelA/SpoT family [Xanthomonas gardneri ATCC
19865]
Length = 729
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 11/149 (7%)
Query: 258 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
VA E LE K L ++ G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 222 VARERYLETVKRTLSTSLTQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 281
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 282 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVLGPEGRT 332
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 333 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 361
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 54/93 (58%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR L + RA+AQ T I
Sbjct: 121 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLARMRVADRLSEEQRRALAQLTRDI 180
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W +K ELEDL F L+P +R++
Sbjct: 181 HAPLANRLGIWQVKWELEDLAFRHLEPDTYRRI 213
>gi|89094556|ref|ZP_01167494.1| GTP pyrophosphokinase [Neptuniibacter caesariensis]
gi|89081155|gb|EAR60389.1| GTP pyrophosphokinase [Oceanospirillum sp. MED92]
Length = 754
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 102/156 (65%), Gaps = 11/156 (7%)
Query: 261 EEALEKELLISTSYIPGMEVT--LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 318
+E +++ +L S + G+ + +S R K +YSI+ KM+RK++ +VYD RA+R++V
Sbjct: 240 QEYIDRVVLRLESELEGVNIDGDVSGRAKHIYSIWRKMQRKNIEFSQVYDVRAVRILV-- 297
Query: 319 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 378
P + CY++L IVH LW I EFDDY+ +PKP+GY+SLHTAV GP+G LE+
Sbjct: 298 -------PHSRDCYAVLGIVHSLWRNIPHEFDDYVASPKPNGYRSLHTAVFGPEGKVLEI 350
Query: 379 QIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 414
QIRT MHE AE G+ AH LYK T + +S + D+
Sbjct: 351 QIRTYDMHEEAELGVCAHHLYKGTDTRSKSDAYEDK 386
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 87/149 (58%), Gaps = 6/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T++A IL+ V + + + ++FG +A+++ GV +++ I R++ RI+ L
Sbjct: 84 ETLIAAILYRGVRERKIPIERVRKQFGKSIAQMIMGVLQMAAIGS--RKNPRID--DSVL 139
Query: 72 GHE--EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
G + + +++R ML+ M+DD RV LIK+A+R +R + K VA+E I+ L
Sbjct: 140 GSDTTQMDNVRKMLVAMIDDVRVALIKIAERTCAIRGVKDGSRRKRYLVAREVFDIYAPL 199
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A RLG+ +K ELEDL F L+P ++ +
Sbjct: 200 AHRLGIGHIKWELEDLSFRYLKPNDYKHI 228
>gi|374264055|ref|ZP_09622600.1| hypothetical protein LDG_9071 [Legionella drancourtii LLAP12]
gi|363535622|gb|EHL29071.1| hypothetical protein LDG_9071 [Legionella drancourtii LLAP12]
Length = 734
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 82/119 (68%), Gaps = 9/119 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K ++SI+ KM RK+V + ++YDA A+RV+V + P CY +L IVH LW
Sbjct: 257 RSKHIHSIYKKMTRKNVALDEIYDATAVRVLVTTE------PQ---CYEVLGIVHTLWKQ 307
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 403
I EFDDYI NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE G
Sbjct: 308 IPAEFDDYIFNPKANGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKEGG 366
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A I+ + V A SL +EE+ G +AKLV G+ R+S + H + N+
Sbjct: 78 ETLAAAIIFESVHYADLSLDDVEEQLGPNIAKLVKGIERMSAM------HNVQSFNKYPQ 131
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++ +++R MLL MVDD RVVLIKLA+RL +R LP A +A E + I+ LA+
Sbjct: 132 NKQQIDNIRKMLLAMVDDVRVVLIKLAERLCILRVTAHLPEALRIQIATEAMEIYAPLAN 191
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 164
RLG+ A+K E+EDL F L P+ ++ + L +
Sbjct: 192 RLGIGAIKWEMEDLAFRHLHPEDYKAIAKGLKA 224
>gi|297538564|ref|YP_003674333.1| (p)ppGpp synthetase I SpoT/RelA [Methylotenera versatilis 301]
gi|297257911|gb|ADI29756.1| (p)ppGpp synthetase I, SpoT/RelA [Methylotenera versatilis 301]
Length = 739
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 88/126 (69%), Gaps = 9/126 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ ++ R K +YSI KM+ K + +++YD RA+R++V + I+ CY++L +
Sbjct: 257 IKAEVTGRPKHIYSIIKKMKSKRLDFNELYDVRAVRILVDE---------IKDCYTVLGM 307
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
+H LW PI GEFDDYI PK + Y+SLHTAV GP G ALEVQIRT +MH+++E G+AAHW
Sbjct: 308 IHNLWQPIPGEFDDYIARPKSNNYRSLHTAVSGPRGLALEVQIRTVEMHQHSELGVAAHW 367
Query: 398 LYKETG 403
YKE G
Sbjct: 368 RYKEGG 373
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 7/217 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V+T+ A ILH V + + ++E +FG + LV G+SR+ I + +
Sbjct: 78 VETIAATILHAVPERLVDWRTALETQFGSNIVGLVEGISRMEQIQAFSEIEGLHDPDLKN 137
Query: 71 LGH-EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
H ++ LR MLL MV D RVVLIKLA+R H +R + P++ + +AQE+ I+ L
Sbjct: 138 GDHAQQVESLRKMLLAMVQDIRVVLIKLAERTHTLRCLSGASPSQQKRIAQESKGIFAPL 197
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDE 189
A+RLG+W +K ELEDL L+PQ+++ ++A M R RV + I +V+ +
Sbjct: 198 ANRLGVWQIKWELEDLSLRYLEPQLYK----EVAKMLDER-RVDREQYIIDVVNQLKYEL 252
Query: 190 RTASDDESFTTFDEHVLS-MKDLLEAVVPFDILSDRR 225
A T +H+ S +K + + F+ L D R
Sbjct: 253 SHAEIKAEVTGRPKHIYSIIKKMKSKRLDFNELYDVR 289
>gi|302877551|ref|YP_003846115.1| RelA/SpoT family protein [Gallionella capsiferriformans ES-2]
gi|302580340|gb|ADL54351.1| RelA/SpoT family protein [Gallionella capsiferriformans ES-2]
Length = 645
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E ++ R K +YSI +KM+RK + ++YD RA+R++V D +Q CY+ L
Sbjct: 246 GIEAEVTGRPKHIYSIINKMKRKHLAFDELYDVRAVRILVDD---------VQSCYASLS 296
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW I E+DDYI PK + Y+SLHTAV GP EVQIRT++MH+Y+E G+AAH
Sbjct: 297 LVHDLWTQIGSEYDDYIARPKSNNYRSLHTAVIGPREQNFEVQIRTREMHQYSELGVAAH 356
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 357 WRYKEGGK 364
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 114/218 (52%), Gaps = 15/218 (6%)
Query: 12 DTVVAGILHDV---VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQ 68
+T+ A ILH V +DD E L + +FG V LV G+SRL I Q R R + ++
Sbjct: 73 ETIAATILHAVPEYLDDWAEKLKT---DFGAPVMALVEGISRLEQIKQF--RELR-STDK 126
Query: 69 GTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 128
++ + LR MLL MV D RVVLIKLA+R +R + P + + +AQET ++
Sbjct: 127 KIDNSQQIDVLRKMLLAMVSDIRVVLIKLAERTQTLRCLSGASPDEQKLIAQETQSLFAP 186
Query: 129 LASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLD 188
LA+RLG+W +K ELEDL L P +++++ A + R RV R I +V
Sbjct: 187 LANRLGVWQIKWELEDLSVRYLDPVLYKQV----ARLLDER-RVDRERYIDDVVQQLKRT 241
Query: 189 ERTASDDESFTTFDEHVLSMKDLLEAV-VPFDILSDRR 225
A + T +H+ S+ + ++ + FD L D R
Sbjct: 242 LSAAGIEAEVTGRPKHIYSIINKMKRKHLAFDELYDVR 279
>gi|319943391|ref|ZP_08017673.1| GTP diphosphokinase [Lautropia mirabilis ATCC 51599]
gi|319743206|gb|EFV95611.1| GTP diphosphokinase [Lautropia mirabilis ATCC 51599]
Length = 791
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K LYSI +K+R K + + K++D RALRV+V + CY+ LD
Sbjct: 284 GIQAQVKGRSKHLYSIHNKLRAKHLSLEKLHDLRALRVMV---------ETLADCYATLD 334
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH+ W+P E DDYI +PKP+GYQSLHT V DG +EVQIRT+ MHE AE+GLAAH
Sbjct: 335 LVHQRWVPEMDELDDYIADPKPNGYQSLHTVVMADDGRPMEVQIRTRAMHEAAEYGLAAH 394
Query: 397 WLYKE 401
W YKE
Sbjct: 395 WRYKE 399
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 35/176 (19%)
Query: 13 TVVAGIL--HDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
T V G+L D D E + EE G + L+A RL ++ + +QG
Sbjct: 84 TRVLGLLVCSDPWPDQAELDVQLGEELGAYLGTLLANCQRLMSLS-----FSALIGSQGA 138
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYA--------------------- 109
G + LR M L M D RVV+++LA L ++R + A
Sbjct: 139 PGQSQPEVLRRMTLAMARDVRVVMVRLASALQSLRHVAAHRGTGDDAEGQGSSLAKGLVE 198
Query: 110 -------LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
+ A + +AQE + + LA+RLGL+ +K E+EDL F L+P +R++
Sbjct: 199 PGVSVAPVSEADVQGLAQEAMQVLAPLANRLGLYRIKWEMEDLAFRCLEPARYREL 254
>gi|438000121|ref|YP_007183854.1| hypothetical protein CKBE_00588 [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451813053|ref|YP_007449506.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429339355|gb|AFZ83777.1| hypothetical protein CKBE_00588 [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451779022|gb|AGF49902.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 340
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ RLK +YSI++KM K+V K+YD ALR+VV D ++ CY +LD
Sbjct: 210 GIKAEITGRLKHIYSIWNKMLIKNVDFAKLYDLSALRIVVKD---------VKTCYMVLD 260
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH+LW I EFDDYI PKP+GYQSLHT V +E+QIRT MH +AE+GLAAH
Sbjct: 261 IVHKLWSHIPEEFDDYISRPKPNGYQSLHTVVIDKYNYLIEIQIRTGDMHNFAEYGLAAH 320
Query: 397 WLYKE 401
W YK+
Sbjct: 321 WYYKK 325
>gi|325914168|ref|ZP_08176521.1| (p)ppGpp synthetase, RelA/SpoT family [Xanthomonas vesicatoria ATCC
35937]
gi|325539671|gb|EGD11314.1| (p)ppGpp synthetase, RelA/SpoT family [Xanthomonas vesicatoria ATCC
35937]
Length = 727
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 258 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
VA E +E K L S G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 220 VARERYIEAVKRALSSALAGQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDVRAIRVM 279
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 280 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 330
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 331 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 359
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 54/93 (58%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR L + RA+AQ T I
Sbjct: 119 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLARMRVADRLSEEQRRALAQLTRDI 178
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W +K ELEDL F L+P +R++
Sbjct: 179 HAPLANRLGIWQVKWELEDLAFRHLEPDTYRRI 211
>gi|192360692|ref|YP_001983035.1| GTP pyrophosphokinase [Cellvibrio japonicus Ueda107]
gi|190686857|gb|ACE84535.1| GTP pyrophosphokinase [Cellvibrio japonicus Ueda107]
Length = 748
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 92/138 (66%), Gaps = 9/138 (6%)
Query: 268 LLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA 327
LL + + G++ +S R K +YSI+ KM+RK + +VYD RA+R++V P
Sbjct: 250 LLRNELHKAGIDGEVSGRAKHIYSIWRKMQRKGIPFSQVYDIRAVRILV---------PT 300
Query: 328 IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHE 387
++ CY++L IVH LW I EFDDYI +PK +GY+SLHTAV GP+ LE+QIRT++MHE
Sbjct: 301 VRDCYAVLGIVHSLWRNIPHEFDDYIASPKENGYRSLHTAVWGPENKVLEIQIRTREMHE 360
Query: 388 YAEHGLAAHWLYKETGNK 405
+E G+ AHW YK T K
Sbjct: 361 ESELGVCAHWRYKGTDTK 378
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 91/150 (60%), Gaps = 8/150 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D +VA +L+ V + +L I++ FGD VAKLV GV R++ I+ ++R + L
Sbjct: 85 DALVAAMLYRAVRENKVALPEIQKHFGDTVAKLVKGVLRMAAIS-----YQRKEGEERVL 139
Query: 72 GH---EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 128
G E+A +R ML+ MVDD RV LIKLA+R +R++ P + R VA+E I+
Sbjct: 140 GSQAVEQAEKIRKMLVAMVDDVRVALIKLAERTCAIRSVKNASPDRRRQVAREVADIYAP 199
Query: 129 LASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA RLG+ +K ELEDL F LQP+ ++++
Sbjct: 200 LAHRLGIGHIKWELEDLSFRYLQPEEYKRI 229
>gi|219849404|ref|YP_002463837.1| (p)ppGpp synthetase I SpoT/RelA [Chloroflexus aggregans DSM 9485]
gi|219543663|gb|ACL25401.1| (p)ppGpp synthetase I, SpoT/RelA [Chloroflexus aggregans DSM 9485]
Length = 789
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 102/162 (62%), Gaps = 14/162 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLS-YINQLLRRHRRINVNQGT 70
+++ A +LHDVV+D + IE FG +VA LV GV++LS Y N+ R + GT
Sbjct: 132 ESIAAALLHDVVEDTGVPIEVIERFFGKQVANLVDGVTKLSGYENKT-----REEIQAGT 186
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
R +++ DDPRVVLIKLADRLHNMRTI+A PP K + VA+ETL I+ LA
Sbjct: 187 Y--------RKLIIASADDPRVVLIKLADRLHNMRTIHATPPNKQQRVARETLDIYAPLA 238
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
RLG+W +K+ELEDL F VL P ++++ LA R+R+
Sbjct: 239 HRLGMWQMKSELEDLAFKVLHPDRYQEIARGLAMRKEARDRI 280
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 83/130 (63%), Gaps = 7/130 (5%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ R K +YSI+ KM RK V + ++YD A+R++V D N + CY L
Sbjct: 296 GIKAEVTGRSKHIYSIWRKMERKGVPLERIYDQLAVRIIVDDPNN-----EVGACYQALG 350
Query: 337 IVHRL--WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
+VH W P+ EFDDYI PK S Y+S+HT V P+G EVQIR++KMHE AEHG+A
Sbjct: 351 VVHSKMNWTPVMQEFDDYIAAPKESSYRSIHTTVILPEGLHCEVQIRSRKMHEEAEHGIA 410
Query: 395 AHWLYKETGN 404
AHW YKE N
Sbjct: 411 AHWRYKEGFN 420
>gi|114776357|ref|ZP_01451402.1| GTP pyrophosphokinase [Mariprofundus ferrooxydans PV-1]
gi|114553187|gb|EAU55585.1| GTP pyrophosphokinase [Mariprofundus ferrooxydans PV-1]
Length = 711
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ T+ R+K LYSI KM+RK V ++D A RV+V D Q CY L
Sbjct: 228 GLAATVHGRMKHLYSIHEKMQRKHVNFDDIFDLIAFRVIVDDA---------QTCYQALG 278
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH L+ P+ G F DYI PKP+GYQSLHTAV GP+ +E+QIRT MH YAE G+A+H
Sbjct: 279 IVHSLYRPVPGRFKDYIALPKPNGYQSLHTAVIGPENFRIEIQIRTHLMHSYAEDGVASH 338
Query: 397 WLYKE 401
W YKE
Sbjct: 339 WAYKE 343
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 94/150 (62%), Gaps = 12/150 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+V+ +LHD V+D L IEE FG +VA+LV GV+++ I+ N ++
Sbjct: 65 SVITALLHDTVEDTGVKLSEIEENFGADVARLVDGVTKIGQIH--------FNSSE---- 112
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
H++A + R M+L D RV+++KLADRLHNMRT+ +P K R + +ETL I+ LA R
Sbjct: 113 HKQAENFRKMILATAKDLRVLIVKLADRLHNMRTLGFVPEHKRRRIGEETLQIYAPLAHR 172
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADL 162
LG+ +K E+EDL F+ L+P+ ++ + ++
Sbjct: 173 LGMHWIKQEMEDLVFSHLEPEAYKALMVEM 202
>gi|313679281|ref|YP_004057020.1| (p)ppGpp synthetase I SpoT/RelA [Oceanithermus profundus DSM 14977]
gi|313151996|gb|ADR35847.1| (p)ppGpp synthetase I, SpoT/RelA [Oceanithermus profundus DSM
14977]
Length = 734
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 105/172 (61%), Gaps = 15/172 (8%)
Query: 234 LAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIF 293
LA S+A ++ VV +A AL E ALE + ++ S + G V S R K L+SI+
Sbjct: 212 LAHHSQAHRE--VVDNAKGAL------EHALENDYVLGLS-VDGFSV--SGRTKHLFSIW 260
Query: 294 SKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI----QCCYSLLDIVHRLWIPIDGEF 349
KM+R++ + ++YD ALRV++ K A Q CY +L +VH LW PI G
Sbjct: 261 KKMQREEKTLEQIYDLLALRVILDPKPVASPEEAASREKQVCYHVLGLVHALWPPIPGRV 320
Query: 350 DDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
DYI PKP+GYQSLHT V P G LEVQIRT++MH AE+G+AAHWLYKE
Sbjct: 321 KDYIAQPKPNGYQSLHTTVITPGGLPLEVQIRTREMHRVAEYGVAAHWLYKE 372
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 97/153 (63%), Gaps = 11/153 (7%)
Query: 12 DTVVAGILHDVVDDA-CESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
D+++AG+LHD V+D S +I + FG++VA++V G +++S ++++ +
Sbjct: 71 DSLIAGLLHDTVEDVESVSFETIRQRFGEDVARIVEGETKVSKLSKM----------ATS 120
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ ++A +LR M + M D R++++KLADR HNMRT+ +PP K R +++ETL I+ +A
Sbjct: 121 VEDQQAENLRQMFIAMTRDLRIIIVKLADRTHNMRTLEFMPPEKQRRISKETLEIFAPMA 180
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ +K ELEDL F L P+ + + LA
Sbjct: 181 HRLGIGQIKLELEDLAFRYLHPEEYAALVERLA 213
>gi|320161070|ref|YP_004174294.1| GTP pyrophosphokinase [Anaerolinea thermophila UNI-1]
gi|319994923|dbj|BAJ63694.1| GTP pyrophosphokinase [Anaerolinea thermophila UNI-1]
Length = 733
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 126/224 (56%), Gaps = 17/224 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRIN-VNQGTLG 72
V+AG+LHD V+D +L I EFGDE+AKLV GV++L+++ ++ R + + V + L
Sbjct: 65 VIAGLLHDTVEDTPITLEDIRREFGDEIAKLVDGVTKLTHLPRVSRDDQYASEVEEYGLA 124
Query: 73 HEEAND----------LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQET 122
E D LR L M +D RVVLIKLADRLHNMRT+ +P K R +AQET
Sbjct: 125 LETTEDTRRKQLAQETLRKTFLAMGEDIRVVLIKLADRLHNMRTLGYMPENKRRRIAQET 184
Query: 123 LLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
L I+ LA+RLG+W +K ELEDL F + P+ ++++ LA + R ++I I+
Sbjct: 185 LDIFAPLANRLGIWQIKWELEDLAFRYVNPEKYKEIAELLA-----QKRADREKQIQEII 239
Query: 183 SSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
S A T +H+ S+ K ++E FD L D R
Sbjct: 240 SRLRTILEQAGIQAEITGRPKHIYSIYKKMVEKSRSFDSLMDLR 283
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 79/131 (60%), Gaps = 9/131 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ R K +YSI+ KM K + D R +R++V P Q CY+ L
Sbjct: 250 GIQAEITGRPKHIYSIYKKMVEKSRSFDSLMDLRGVRLIV---------PTTQDCYAALG 300
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W PI EFDDYI PK + YQSLHTAV DG LEVQIRT +M + AE+G+AAH
Sbjct: 301 IIHTHWRPIPHEFDDYIAAPKDNNYQSLHTAVIYDDGKPLEVQIRTPEMDQNAEYGIAAH 360
Query: 397 WLYKETGNKLQ 407
W YKE KL+
Sbjct: 361 WRYKEKHGKLE 371
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 28/161 (17%)
Query: 555 HLTEEEESEYWAVVSAVF--EGKPVDSVVSRRSSDSVAPTS-------------MEASIN 599
++ +++ Y ++ +AV +GKP++ + D A +E
Sbjct: 316 YIAAPKDNNYQSLHTAVIYDDGKPLEVQIRTPEMDQNAEYGIAAHWRYKEKHGKLEEDYE 375
Query: 600 NKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGS 659
+V LLR ++ W +++ A G + + D V V P G+I+ L GS
Sbjct: 376 QRVNLLRRLMDWRQEVTDAAEFMD---GVRTDVFKDRVY------VFTPKGDIIDLPQGS 426
Query: 660 TAADAA----MKVGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
T D A ++G + VNG+LV + ELK GD VE+
Sbjct: 427 TPIDFAYHVHTEIGHRCRGAKVNGKLVTLDYELKTGDQVEI 467
>gi|225023659|ref|ZP_03712851.1| hypothetical protein EIKCOROL_00522 [Eikenella corrodens ATCC
23834]
gi|224943541|gb|EEG24750.1| hypothetical protein EIKCOROL_00522 [Eikenella corrodens ATCC
23834]
Length = 737
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 84/123 (68%), Gaps = 9/123 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + +YD RA+RV+V ++ CY++L IVH L
Sbjct: 257 VAGRPKHIYSIYRKMVKKKLDFEGLYDIRAVRVLVN---------SVPECYTVLGIVHSL 307
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT++MH++ E G+AAHW YKE
Sbjct: 308 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGIEVQIRTKEMHQFNEFGVAAHWRYKE 367
Query: 402 TGN 404
G
Sbjct: 368 GGK 370
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+ V A IL + + + E+ G V LV G+ ++ + R +
Sbjct: 77 EAVAATILSGMSKQGGDWQLQVAEQCGQTVCSLVQGIDQVQKLTHFARVDGLATPEERA- 135
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP--PAKARAVAQETLLIWCSL 129
+A +R MLL MV D RVVLIKLA R M+ + P P K R++A+ETL I+ L
Sbjct: 136 --AQAETMRKMLLAMVSDIRVVLIKLALRTRTMQYLGGCPDSPEK-RSIAKETLDIFAPL 192
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+RLG+W LK +LEDL F P+ +R++
Sbjct: 193 ANRLGVWQLKWQLEDLGFRHQNPEEYRRI 221
>gi|257092684|ref|YP_003166325.1| (p)ppGpp synthetase I SpoT/RelA [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257045208|gb|ACV34396.1| (p)ppGpp synthetase I, SpoT/RelA [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 753
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 85/120 (70%), Gaps = 9/120 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+ R K +YSI++KMR+K V +VYD RALRV+V + ++ CY+ L IVH +
Sbjct: 272 IYGRPKHIYSIWNKMRKKGVEFSEVYDVRALRVIVEE---------VRDCYTALGIVHHI 322
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI EFDDYI +PK + Y+SLHTAV PDG A+EVQIRT++MH +AE G+AAHW YKE
Sbjct: 323 WSPIAKEFDDYISHPKGNDYRSLHTAVHCPDGRAIEVQIRTREMHRHAELGVAAHWRYKE 382
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 90/161 (55%), Gaps = 4/161 (2%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
LI + K D+ +A +L V L IE +FG VA LV G+SRL+ + + R
Sbjct: 76 LIVAGLKLDADSRLAALLFAVPAILEFGLTRIESDFGRSVAHLVDGISRLNRLRPISRGF 135
Query: 62 RRINVNQGTLGHEEAND----LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARA 117
+++ G +E LR MLL MV+D RVVL++LA R +R A P
Sbjct: 136 VAHSIDSGEKNPQELRSQIEVLRKMLLAMVEDIRVVLLRLASRTQTLRHYAAEPDELRVP 195
Query: 118 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
VA+ETL ++ LA+RLG+W LK ELEDL F L P+I++++
Sbjct: 196 VARETLELYSPLANRLGVWELKWELEDLSFRYLHPEIYKEI 236
>gi|146283008|ref|YP_001173161.1| GTP pyrophosphokinase [Pseudomonas stutzeri A1501]
gi|386021388|ref|YP_005939412.1| GTP pyrophosphokinase [Pseudomonas stutzeri DSM 4166]
gi|145571213|gb|ABP80319.1| GTP pyrophosphokinase [Pseudomonas stutzeri A1501]
gi|327481360|gb|AEA84670.1| GTP pyrophosphokinase [Pseudomonas stutzeri DSM 4166]
Length = 747
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 84/126 (66%), Gaps = 9/126 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPEIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKET 402
W YK T
Sbjct: 366 WRYKGT 371
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 100/183 (54%), Gaps = 12/183 (6%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L + + FG VAKL+ GV R++ I+ L + L
Sbjct: 83 DSLVAAVIYRGVREGKIQLADVHQRFGPVVAKLIEGVLRMAAISASLNPRESL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K + VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKLADDEKRQRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDER 190
RLG+ +K ELEDL F L+P+ +++ +A + R R+ + IT +V DE
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPEQYKQ----IAQLLHER-RLDREQYITNVVQQLK-DEL 251
Query: 191 TAS 193
TA+
Sbjct: 252 TAA 254
>gi|418294259|ref|ZP_12906155.1| GTP pyrophosphokinase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379065638|gb|EHY78381.1| GTP pyrophosphokinase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 747
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 84/126 (66%), Gaps = 9/126 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPDIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKET 402
W YK T
Sbjct: 366 WRYKGT 371
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L + + FG VAKL+ GV R++ I+ L + L
Sbjct: 83 DSLVAAVIYRGVREGKIQLPDVHQRFGSVVAKLIEGVLRMAAISASLNPRESL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K + VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKLTDDEKRQRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P+ ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|431926786|ref|YP_007239820.1| RelA/SpoT family (p)ppGpp synthetase [Pseudomonas stutzeri RCH2]
gi|431825073|gb|AGA86190.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas stutzeri RCH2]
Length = 747
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 84/126 (66%), Gaps = 9/126 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPDIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKET 402
W YK T
Sbjct: 366 WRYKGT 371
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L + + FG VAKL+ GV R++ I+ L + L
Sbjct: 83 DSLVAAVIYRGVREGKIQLADVNQRFGSVVAKLIEGVLRMAAISASLNPRESL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K + VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKLADDEKRQRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P+ ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|392420864|ref|YP_006457468.1| GTP pyrophosphokinase [Pseudomonas stutzeri CCUG 29243]
gi|452750395|ref|ZP_21950145.1| GTP pyrophosphokinase [Pseudomonas stutzeri NF13]
gi|390983052|gb|AFM33045.1| GTP pyrophosphokinase [Pseudomonas stutzeri CCUG 29243]
gi|452005768|gb|EMD98050.1| GTP pyrophosphokinase [Pseudomonas stutzeri NF13]
Length = 747
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 84/126 (66%), Gaps = 9/126 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPDIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKET 402
W YK T
Sbjct: 366 WRYKGT 371
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L + + FG VAKLV GV R++ I+ L + L
Sbjct: 83 DSLVAAVIYRGVREGKIQLADVNQRFGPVVAKLVEGVLRMAAISASLNPRESL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K + VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKLADDEKRQRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P+ ++++
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|222151518|ref|YP_002560674.1| GTP pyrophosphokinase [Macrococcus caseolyticus JCSC5402]
gi|222120643|dbj|BAH17978.1| GTP pyrophosphokinase [Macrococcus caseolyticus JCSC5402]
Length = 730
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 99/160 (61%), Gaps = 15/160 (9%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
I G+ ++ R K +YSI+ KM ++ +++D A+R++V +I+ CY++
Sbjct: 231 ITGINGEITGRPKHIYSIYRKMVKQKKQFDQIFDLLAIRIIVD---------SIKDCYAV 281
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L +VH LW P+ G F DYI PKP+ YQSLHT V GP+G LE+QIRT +MHE AEHG+A
Sbjct: 282 LGLVHTLWKPMPGRFKDYIAMPKPNMYQSLHTTVVGPNGDPLEIQIRTHEMHEIAEHGVA 341
Query: 395 AHWLYKE-----TGNKLQSISSMD-ESDIEASSSLSKDTD 428
AHW YKE ++ +S+S M +IE + S S D +
Sbjct: 342 AHWAYKEGKSLVNPDEARSLSKMSWMQEIEETDSTSPDAE 381
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDVV+D + +++ F +EVA +V GV++L V +
Sbjct: 70 TIVAGFLHDVVEDTPYTYEDLKQMFNEEVAYIVDGVTKLE------------KVKYRSKA 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
E+A + R + + + D RV+L+KLADRLHNMRT+ A+P K +A+ETL I+ LA R
Sbjct: 118 EEQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPHEKQVRIAKETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQP-QIFR 156
LG+ +K ELED+ + Q FR
Sbjct: 178 LGINTIKWELEDISLRYIDSIQYFR 202
>gi|393758439|ref|ZP_10347260.1| GTP pyrophosphokinase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
gi|393164858|gb|EJC64910.1| GTP pyrophosphokinase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
Length = 764
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 83/124 (66%), Gaps = 9/124 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K ++SI++KMR K + +++D RALRV+V D+ + CY L +VH L
Sbjct: 252 VSGRPKHIFSIWNKMRNKHLDFEQLFDLRALRVIVEDE---------RSCYHTLAVVHSL 302
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ EFDDYI PKP+GY+SLHT + G E+QIRT+ MH++AE+G+AAHW YKE
Sbjct: 303 WTPVPEEFDDYISRPKPNGYRSLHTVIADAQGRCFEIQIRTRDMHQFAEYGMAAHWRYKE 362
Query: 402 TGNK 405
G +
Sbjct: 363 AGAQ 366
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+++ FG EV LV G L + + + + T G ++ R MLL M D R+
Sbjct: 97 VQKAFGTEVMTLVRGSRALYRLGSITGQ-----AKEQTGGGDQKEMKRKMLLAMAADLRI 151
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL++LA RL ++R A+ETL ++ LA+RLG+W +K E+EDL F L P
Sbjct: 152 VLMRLASRLQSLRWYRQSKTVCPVGFARETLELYTPLANRLGIWQIKWEMEDLAFRFLNP 211
Query: 153 QIFRKMRADL 162
++++ + L
Sbjct: 212 EVYKDIAGRL 221
>gi|15837917|ref|NP_298605.1| ATP:GTP 3'-pyrophosphotransferase [Xylella fastidiosa 9a5c]
gi|9106309|gb|AAF84125.1|AE003964_9 ATP:GTP 3'-pyrophosphotranferase [Xylella fastidiosa 9a5c]
Length = 718
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +VYD +A+RV+V D + CY+ L
Sbjct: 234 GVCAEVSGRPKHIYSIWRKMQKKRLHFEQVYDLQAVRVMVED---------MAACYAALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ GEFDDYI PK + Y+SLHTAV GP+G +EVQIRT +MH +AE G+AAH
Sbjct: 285 VVHALWAPVPGEFDDYIARPKENDYRSLHTAVLGPEGRTVEVQIRTHEMHAHAELGVAAH 344
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 345 WKYKEGGK 352
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 65 NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLL 124
++ G LR +LL +V D RVV I LA +L MR L ++ RA+AQ T
Sbjct: 111 TLHPGCAAGRNGEGLRRLLLALVHDLRVVPILLARQLAKMRAAGVLLESQRRALAQLTRD 170
Query: 125 IWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
I LA+RLG+W LK ELEDL F L+ +I+R + + L +RV R I+ I
Sbjct: 171 IHAPLANRLGIWQLKWELEDLAFRYLESEIYRSIASALDE-----SRVARERYISVI 222
>gi|329118474|ref|ZP_08247179.1| GTP diphosphokinase [Neisseria bacilliformis ATCC BAA-1200]
gi|327465415|gb|EGF11695.1| GTP diphosphokinase [Neisseria bacilliformis ATCC BAA-1200]
Length = 736
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
L+ R K +YSI+ KM +K + +YD RA+R++V ++ CY+ L IVH L
Sbjct: 257 LAGRPKHIYSIYKKMVKKKLDFDGLYDIRAVRILVD---------SVAECYTTLGIVHSL 307
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GYQSLHT + GP+ +EVQIRT +MH++ E G+AAHW YKE
Sbjct: 308 WQPIPGEFDDYIANPKGNGYQSLHTVIVGPEDKGVEVQIRTFEMHQFNEFGVAAHWRYKE 367
Query: 402 TGN 404
G
Sbjct: 368 GGK 370
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+ E+ G VA LV G+ + + R + +A +R MLL MV D RV
Sbjct: 98 VAEKCGKTVADLVRGIDEVQKLTHFARMDSLATPEERA---AQAETMRKMLLAMVSDIRV 154
Query: 93 VLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 151
V+IKLA R + + +P + + RA+A+ETL I+ LA+RLG+W LK +LEDL F
Sbjct: 155 VIIKLAMRTQTLHFLGGVPDSPEKRAIAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQN 214
Query: 152 PQIFRKM 158
P+ +R++
Sbjct: 215 PEEYRRI 221
>gi|407717088|ref|YP_006838368.1| ppGpp synthetase I, SpoT/RelA [Cycloclasticus sp. P1]
gi|407257424|gb|AFT67865.1| ppGpp synthetase I, SpoT/RelA [Cycloclasticus sp. P1]
Length = 720
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/404 (28%), Positives = 180/404 (44%), Gaps = 116/404 (28%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
LI S K VD ++A I+HD+++D + + F D+VA LV VS+L+ IN R
Sbjct: 66 LILSHMKMDVDCIMAAIMHDLLEDTDTTYEELASLFNDDVAGLVDAVSKLTKINFKTR-- 123
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 121
EEA + NMR ++ A+A++
Sbjct: 124 ------------EEA-----------------------QAENMRKMFL-------AMAKD 141
Query: 122 TLLIWCSLASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP-RNRVGYSRRIT 179
+I LA RL + +K V++P R++ + +++P +R+G
Sbjct: 142 LRVIIIKLADRLHNMRTIK---------VMKPASRRRIAKETLDIYAPIAHRLG------ 186
Query: 180 TIVSSPPLDERTASDDESFTTFDEHVLSMKDL-LEAVVPFDILSDRRKRTKFLHDLAKSS 238
E L ++DL EA+ P +R ++ K +
Sbjct: 187 ---------------------MHEFRLELEDLSFEAMFP--------RRRAIINKSIKKA 217
Query: 239 EAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRR 298
+K +V E L E + T + PG+ + R K+LYS++ KM+R
Sbjct: 218 RGNRK------------EVVDKVEKLLVEKFLDTDF-PGV---IYGREKNLYSVYRKMKR 261
Query: 299 KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKP 358
+++ ++V+D A RV+V I+ CY L ++H L+ P+ G F DYI PK
Sbjct: 262 QNIPFNEVFDVYAFRVIV---------ETIEQCYQALGLLHNLFKPVPGRFKDYIALPKT 312
Query: 359 SGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 402
+GYQSLHT + GP G +E+QIRT +M AE G+AAHWLYK T
Sbjct: 313 NGYQSLHTVLVGPFGVPIELQIRTLEMDRLAESGIAAHWLYKTT 356
>gi|319779240|ref|YP_004130153.1| GTP pyrophosphokinase [Taylorella equigenitalis MCE9]
gi|397661480|ref|YP_006502180.1| GTP pyrophosphokinase [Taylorella equigenitalis ATCC 35865]
gi|317109264|gb|ADU92010.1| GTP pyrophosphokinase [Taylorella equigenitalis MCE9]
gi|394349659|gb|AFN35573.1| GTP pyrophosphokinase [Taylorella equigenitalis ATCC 35865]
Length = 753
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 89/135 (65%), Gaps = 9/135 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K ++SI++KM+ K + +YD A+RV+V + CY+ L
Sbjct: 252 GIRAEVSGRAKHIFSIYNKMKNKSLKFEDLYDLLAIRVIVQTERD---------CYTTLS 302
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH + P+ +FDDYI PKP+GY+SLHT V+ +G+ EVQIRTQKMHE+AE+G+AAH
Sbjct: 303 FVHSNYHPVMEQFDDYIARPKPNGYRSLHTVVRDSNGAVFEVQIRTQKMHEFAEYGMAAH 362
Query: 397 WLYKETGNKLQSISS 411
W YKE G+K ++S+
Sbjct: 363 WRYKEAGSKGGAVSA 377
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 13/145 (8%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL-----GHEEANDLRVMLLGMV 87
I ++FG+E+ LV G L + Q+ VNQ +L + LR MLL M
Sbjct: 100 IMDKFGEEIFDLVEGAQTLKRVGQV--------VNQASLPTAQQEQYQQELLRKMLLAMA 151
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D R+VLI+LA RL +R Q+ I+ LA+RLG+W +K ELEDL F
Sbjct: 152 TDLRIVLIRLASRLQTLRWFVDSKLECPVEFLQQNRNIYAPLANRLGIWQIKWELEDLSF 211
Query: 148 AVLQPQIFRKMRADLASMWSPRNRV 172
PQ +R + L + + R ++
Sbjct: 212 RFENPQEYRDIANKLEATRAEREQL 236
>gi|171463693|ref|YP_001797806.1| GTP diphosphokinase [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171193231|gb|ACB44192.1| GTP diphosphokinase [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 678
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K +YSI+ KM+ + + +YD RA RV+V D I+ CY+ L I
Sbjct: 211 IEGEVLGRPKHIYSIWKKMQGRSLDFANLYDVRAFRVLVDD---------IKSCYAALGI 261
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH +W P+ EFDDYI PKP+GYQSLHT V DG+A E+Q+RT +MH+ AE+GLAAHW
Sbjct: 262 VHNVWQPVSREFDDYIARPKPNGYQSLHTVVMDDDGTAFEIQVRTHEMHQQAEYGLAAHW 321
Query: 398 LYKE 401
YKE
Sbjct: 322 RYKE 325
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Query: 37 FGDEVAKLVAGVSRLSYIN-QLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLI 95
G+E AKL+ G L +L+R ++V G EE LR MLL DD RVVLI
Sbjct: 64 IGEEPAKLLIGYRGLRQAQAKLMRDDGGLSVT----GQEEM--LRKMLLAFGDDLRVVLI 117
Query: 96 KLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 155
LA RL +R I + A AQE L I SLA+RLG+W +K E+EDL F L P +
Sbjct: 118 YLASRLQTLRWITQEKIKMSAAWAQEILNIDASLANRLGIWQMKWEMEDLAFRALSPDTY 177
Query: 156 RKM 158
R++
Sbjct: 178 REI 180
>gi|399114593|emb|CCG17387.1| GTP pyrophosphokinase [Taylorella equigenitalis 14/56]
Length = 753
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 89/135 (65%), Gaps = 9/135 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K ++SI++KM+ K + +YD A+RV+V + CY+ L
Sbjct: 252 GIRAEVSGRAKHIFSIYNKMKNKSLKFEDLYDLLAIRVIVQTERD---------CYTTLS 302
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH + P+ +FDDYI PKP+GY+SLHT V+ +G+ EVQIRTQKMHE+AE+G+AAH
Sbjct: 303 FVHSNYHPVMEQFDDYIARPKPNGYRSLHTVVRDSNGAVFEVQIRTQKMHEFAEYGMAAH 362
Query: 397 WLYKETGNKLQSISS 411
W YKE G+K ++S+
Sbjct: 363 WRYKEAGSKGGAVSA 377
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 13/145 (8%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL-----GHEEANDLRVMLLGMV 87
I ++FG+E+ LV G L + Q+ VNQ +L + LR MLL M
Sbjct: 100 IMDKFGEEIFDLVEGAQTLKRVGQV--------VNQASLPTAQQEQYQQELLRKMLLAMA 151
Query: 88 DDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCF 147
D R+VLI+LA RL +R Q+ I+ LA+RLG+W +K ELEDL F
Sbjct: 152 TDLRIVLIRLASRLQTLRWFVDSKFECPVEFLQQNRNIYAPLANRLGIWQIKWELEDLSF 211
Query: 148 AVLQPQIFRKMRADLASMWSPRNRV 172
PQ +R + L + + R ++
Sbjct: 212 RFENPQEYRDIANKLEATRAEREQL 236
>gi|220932056|ref|YP_002508964.1| (p)ppGpp synthetase I SpoT/RelA [Halothermothrix orenii H 168]
gi|219993366|gb|ACL69969.1| (p)ppGpp synthetase I, SpoT/RelA [Halothermothrix orenii H 168]
Length = 716
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K LYSI+ KM+RK+V +++YD A+R++V +++ CY +L
Sbjct: 227 GILAEIYGRPKHLYSIYQKMKRKEVDFNEIYDLTAIRIIVN---------SVKECYEVLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH +W PI G F DYI PK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 278 IVHEIWKPIPGRFKDYIAMPKSNMYQSLHTTVIGPKGDPLEVQIRTPEMHRTAEYGIAAH 337
Query: 397 WLYKE 401
W YKE
Sbjct: 338 WKYKE 342
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 12/159 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
++ A +LHDVV+D + +IEEEFGDE+A LV GV++L+ + +
Sbjct: 64 SISAALLHDVVEDTSVTSKNIEEEFGDEIALLVDGVTKLT------------RLEFKSKE 111
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A +LR M L M +D RVVLIKLADRLHNMRT+ L K A+ETL I+ LA R
Sbjct: 112 EHQAENLRKMFLAMSEDIRVVLIKLADRLHNMRTLRFLAKEKQVEKAKETLEIYAPLAHR 171
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
LG+ LK ELEDL F + +++ ++ +A+ R R
Sbjct: 172 LGMSRLKWELEDLSFRFIDSKMYYEIAEKVAANRKQRIR 210
>gi|421616773|ref|ZP_16057775.1| GTP pyrophosphokinase [Pseudomonas stutzeri KOS6]
gi|421617261|ref|ZP_16058255.1| GTP pyrophosphokinase [Pseudomonas stutzeri KOS6]
gi|409780759|gb|EKN60376.1| GTP pyrophosphokinase [Pseudomonas stutzeri KOS6]
gi|409781254|gb|EKN60856.1| GTP pyrophosphokinase [Pseudomonas stutzeri KOS6]
Length = 747
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 83/126 (65%), Gaps = 9/126 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIPADIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 397 WLYKET 402
W YK T
Sbjct: 366 WRYKGT 371
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 100/183 (54%), Gaps = 12/183 (6%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D+++A +++ V + L + + FG VAKL+ GV R++ I+ L + L
Sbjct: 83 DSLIAAVIYRGVREGKIQLADVHQRFGPVVAKLIEGVLRMAAISASLNPRESL-----VL 137
Query: 72 GHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + + +LR ML+ MVDD RV LIKLA+R +R + K + VA+E I+ LA
Sbjct: 138 GSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKLADDEKRQRVAREVFDIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDER 190
RLG+ +K ELEDL F L+P+ +++ +A + R R+ + IT +V DE
Sbjct: 198 HRLGIGHIKWELEDLSFRYLEPEQYKQ----IAQLLHER-RLDREQYITNVVQQLK-DEL 251
Query: 191 TAS 193
TA+
Sbjct: 252 TAT 254
>gi|384420219|ref|YP_005629579.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353463132|gb|AEQ97411.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 728
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 258 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 221 VARERYLEAVKRTLSAALAQQGLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 280
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 281 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 331
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 332 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 360
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 54/93 (58%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR L + RA+AQ T I
Sbjct: 120 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLSRMRVADRLNEEQRRALAQLTRDI 179
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W +K ELEDL F L+P +R++
Sbjct: 180 HAPLANRLGIWQVKWELEDLAFRHLEPDTYRRI 212
>gi|395008896|ref|ZP_10392492.1| (p)ppGpp synthetase, RelA/SpoT family [Acidovorax sp. CF316]
gi|394313118|gb|EJE50199.1| (p)ppGpp synthetase, RelA/SpoT family [Acidovorax sp. CF316]
Length = 742
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 89/141 (63%), Gaps = 11/141 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ ++ R K +YSI KMR K + +VYD RALRVVV P ++ CY+ L
Sbjct: 249 ISASVQGRPKHIYSIVKKMRGKSLNFDQVYDIRALRVVV---------PTVKDCYAALSW 299
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP-DGSALEVQIRTQKMHEYAEHGLAAH 396
VH+ + PI EFDDYI PK +GYQSLHT V+ +G +E+QIRTQ MHE+AEHG+AAH
Sbjct: 300 VHQRFAPIVEEFDDYIAKPKANGYQSLHTIVRDDLNGKPIEIQIRTQAMHEHAEHGVAAH 359
Query: 397 WLYKETGNK-LQSISSMDESD 416
W YKE G K +S+ E D
Sbjct: 360 WAYKEAGAKGYVGVSATGEYD 380
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 5/126 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
I + FG A L ++L + Q R + ++ L E ++R MLL D RV
Sbjct: 98 ITKAFGANFAALAVETTKLVRVQQQARGAQALD--DPALQTE---NVRKMLLAFSRDLRV 152
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
V+++LA RL +R A + ++A+E+L ++ LA+RLG+W +K ELEDL F L+P
Sbjct: 153 VMLRLASRLQTLRFHAATKLPMSPSLARESLQVFAQLANRLGIWQVKWELEDLSFRFLEP 212
Query: 153 QIFRKM 158
++++
Sbjct: 213 DTYKEV 218
>gi|148358987|ref|YP_001250194.1| GTP pyrophosphokinase [Legionella pneumophila str. Corby]
gi|296107036|ref|YP_003618736.1| GTP pyrophosphokinase [Legionella pneumophila 2300/99 Alcoy]
gi|148280760|gb|ABQ54848.1| GTP pyrophosphokinase ((p)ppGpp synthetase I) stringent stress
response RelA [Legionella pneumophila str. Corby]
gi|295648937|gb|ADG24784.1| GTP pyrophosphokinase [Legionella pneumophila 2300/99 Alcoy]
Length = 734
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 82/117 (70%), Gaps = 9/117 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K ++SI+ KM+RK+V + ++YDA A+R++V + CY +L +VH LW
Sbjct: 257 RSKHIHSIYKKMKRKNVSLDEIYDATAVRILVDTEAQ---------CYEVLGMVHTLWKQ 307
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
I EFDDYI+NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE
Sbjct: 308 IPAEFDDYIINPKSNGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKE 364
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 88/153 (57%), Gaps = 6/153 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A I+ + V A S+ +EE+ G +AKLV G+ ++S +N +N+
Sbjct: 78 ETLAAAIIFENVHYADLSIDDVEEQLGHNIAKLVKGIEKMSAMNNFQA------LNKYPQ 131
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD RVVLIKLA+ L +RT L + +A E + I+ LA+
Sbjct: 132 NKNQIDNIRKMLLAMVDDVRVVLIKLAECLCILRTAGHLSETVRKQLATEAMEIYAPLAN 191
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 164
RLG+ A+K E+EDL F L P+ ++ + L +
Sbjct: 192 RLGIGAIKWEMEDLAFRHLHPEEYKAIAKGLKA 224
>gi|188577401|ref|YP_001914330.1| GTP pyrophosphokinase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188521853|gb|ACD59798.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Xanthomonas oryzae
pv. oryzae PXO99A]
Length = 728
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 258 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 221 VARERYLEAVKRTLSAALAQQGLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 280
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 281 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 331
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 332 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 360
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR L + A+AQ T I
Sbjct: 120 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLSRMRVADRLSKEQRHALAQLTRDI 179
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W +K ELEDL F L+P +R++
Sbjct: 180 HAPLANRLGIWQVKWELEDLAFRHLEPDTYRRI 212
>gi|54294502|ref|YP_126917.1| GTP pyrophosphokinase [Legionella pneumophila str. Lens]
gi|53754334|emb|CAH15811.1| GTP pyrophosphokinase [Legionella pneumophila str. Lens]
Length = 734
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 82/117 (70%), Gaps = 9/117 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K ++SI+ KM+RK+V + ++YDA A+R++V + CY +L +VH LW
Sbjct: 257 RSKHIHSIYKKMKRKNVSLDEIYDATAVRILVDTEAQ---------CYEVLGMVHTLWKQ 307
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
I EFDDYI+NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE
Sbjct: 308 IPAEFDDYIINPKSNGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKE 364
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 88/153 (57%), Gaps = 6/153 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A I+ + V A S+ +EE+ G +AKLV G+ ++S +N +N+
Sbjct: 78 ETLAAAIIFENVHYADLSIDDVEEQLGHNIAKLVKGIEKMSAMNNFQA------LNKYPQ 131
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD RVVLIKLA+ L +RT L + +A E + I+ LA+
Sbjct: 132 NKNQIDNIRKMLLAMVDDVRVVLIKLAECLCILRTAGHLSETIRKQLATEAMEIYAPLAN 191
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 164
RLG+ A+K E+EDL F L P+ ++ + L +
Sbjct: 192 RLGIGAIKWEMEDLAFRHLHPEEYKAIAKGLKA 224
>gi|397667075|ref|YP_006508612.1| (p)ppGpp synthetase I [Legionella pneumophila subsp. pneumophila]
gi|395130486|emb|CCD08728.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Legionella pneumophila
subsp. pneumophila]
Length = 734
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 82/117 (70%), Gaps = 9/117 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K ++SI+ KM+RK+V + ++YDA A+R++V + CY +L +VH LW
Sbjct: 257 RSKHIHSIYKKMKRKNVSLDEIYDATAVRILVDTE---------AQCYEVLGMVHTLWKQ 307
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
I EFDDYI+NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE
Sbjct: 308 IPAEFDDYIINPKSNGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKE 364
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 88/153 (57%), Gaps = 6/153 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A I+ + V A S+ +EE+ G +AKLV G+ ++S +N +N+
Sbjct: 78 ETLAAAIIFENVHYADLSIDDVEEQLGHNIAKLVKGIEKMSAMNNFQA------LNKYPQ 131
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD RVVLIKLA+ L +RT L + +A E + I+ LA+
Sbjct: 132 NKNQIDNIRKMLLAMVDDVRVVLIKLAECLCILRTAGHLSETVRKQLATEAMEIYAPLAN 191
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 164
RLG+ A+K E+EDL F L P+ ++ + L +
Sbjct: 192 RLGIGAIKWEMEDLAFRHLHPEEYKAIAKGLKA 224
>gi|224824791|ref|ZP_03697898.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudogulbenkiania ferrooxidans
2002]
gi|224603284|gb|EEG09460.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudogulbenkiania ferrooxidans
2002]
Length = 733
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 89/127 (70%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ ++ R K +YSI+ KMR+K++ ++YD RA+RV+V +++ CY++L
Sbjct: 252 GVNGEVAGRPKHIYSIWKKMRKKNLDFSELYDIRAVRVLV---------ESVKDCYTVLG 302
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H +W P+ GEFDDYI +PK + Y+SLHTAV GP+ +EVQIRT MHE+AE G+AAH
Sbjct: 303 LIHSMWQPVPGEFDDYISHPKANDYRSLHTAVIGPEDRVIEVQIRTFDMHEHAEFGVAAH 362
Query: 397 WLYKETG 403
W YKE G
Sbjct: 363 WRYKEGG 369
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 83/147 (56%), Gaps = 3/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D VVA +L V D + + EF V LV GV+R+ + ++ R + ++
Sbjct: 79 DAVVATLLFAVPDFREDWHEWMTNEFNPTVVVLVDGVNRVRRLTEIARIDK---LDTPEE 135
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A +R MLL MV D RVVLIKLA R M + P RA+AQET+ ++ LA+
Sbjct: 136 RARQAETMRKMLLAMVADIRVVLIKLAWRTQTMHYLTECPEPVRRAIAQETMDVFAPLAN 195
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+W +K ELEDL F ++P+ ++K+
Sbjct: 196 RLGVWQIKWELEDLAFRHIEPENYKKI 222
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 595 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 654
+A+ K+ LR +L W E++ + L + + + + + V PNG ++
Sbjct: 372 DAAYEEKISWLRQLLDWREEVSDRSGLTDAF---------KTELFSDTIYVLTPNGRVLA 422
Query: 655 LRSGSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVEV 696
L SG+TA D A + G + V GQ+V +T L++G VE+
Sbjct: 423 LPSGATAIDFAYAIHTDLGHRCRGAKVEGQIVPLSTPLQNGQRVEI 468
>gi|54297368|ref|YP_123737.1| GTP pyrophosphokinase [Legionella pneumophila str. Paris]
gi|378777322|ref|YP_005185759.1| GTP pyrophosphokinase [Legionella pneumophila subsp. pneumophila
ATCC 43290]
gi|53751153|emb|CAH12564.1| GTP pyrophosphokinase [Legionella pneumophila str. Paris]
gi|364508136|gb|AEW51660.1| GTP pyrophosphokinase ((p)ppGpp synthetase I) stringent stress
response RelA [Legionella pneumophila subsp. pneumophila
ATCC 43290]
Length = 734
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 82/117 (70%), Gaps = 9/117 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K ++SI+ KM+RK+V + ++YDA A+R++V + CY +L +VH LW
Sbjct: 257 RSKHIHSIYKKMKRKNVSLDEIYDATAVRILVDTEAQ---------CYEVLGMVHTLWKQ 307
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
I EFDDYI+NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE
Sbjct: 308 IPAEFDDYIINPKSNGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKE 364
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 88/153 (57%), Gaps = 6/153 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A I+ + V A S+ +EE+ G +AKLV G+ ++S +N +N+
Sbjct: 78 ETLAAAIIFENVHYADLSIDDVEEQLGHNIAKLVKGIEKMSAMNNFQA------LNKYPQ 131
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD RVVLIKLA+ L +RT L + +A E + I+ LA+
Sbjct: 132 NKNQIDNIRKMLLAMVDDVRVVLIKLAECLCILRTAGHLSETVRKQLATEAMEIYAPLAN 191
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 164
RLG+ A+K E+EDL F L P+ ++ + L +
Sbjct: 192 RLGIGAIKWEMEDLAFRHLHPEEYKAIAKGLKA 224
>gi|52841687|ref|YP_095486.1| GTP pyrophosphokinase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|397663890|ref|YP_006505428.1| (p)ppGpp synthetase I [Legionella pneumophila subsp. pneumophila]
gi|52628798|gb|AAU27539.1| GTP pyrophosphokinase ((p)ppGpp synthetase I) stringent stress
response RelA [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|395127301|emb|CCD05491.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Legionella pneumophila
subsp. pneumophila]
Length = 734
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 82/117 (70%), Gaps = 9/117 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K ++SI+ KM+RK+V + ++YDA A+R++V + CY +L +VH LW
Sbjct: 257 RSKHIHSIYKKMKRKNVSLDEIYDATAVRILVDTEAQ---------CYEVLGMVHTLWKQ 307
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
I EFDDYI+NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE
Sbjct: 308 IPAEFDDYIINPKSNGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKE 364
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 88/153 (57%), Gaps = 6/153 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A I+ + V A S+ +EE+ G +AKLV G+ ++S +N +N+
Sbjct: 78 ETLAAAIIFENVHYADLSIDDVEEQLGHNIAKLVKGIEKMSAMNNFQA------LNKYPQ 131
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD RVVLIKLA+ L +RT L + +A E + I+ LA+
Sbjct: 132 NKNQIDNIRKMLLAMVDDVRVVLIKLAECLCILRTAGHLSETVRKQLATEAMEIYAPLAN 191
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 164
RLG+ A+K E+EDL F L P+ ++ + L +
Sbjct: 192 RLGIGAIKWEMEDLAFRHLHPEEYKAIAKGLKA 224
>gi|345877758|ref|ZP_08829496.1| dihydroneopterin aldolase [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344225209|gb|EGV51574.1| dihydroneopterin aldolase [endosymbiont of Riftia pachyptila (vent
Ph05)]
Length = 734
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 85/126 (67%), Gaps = 9/126 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK V I +++D RA+RV+V D + CY++L
Sbjct: 249 GIQAGISGRPKHIYSIWRKMQRKAVDIEQIFDLRAVRVLVED---------VADCYAVLG 299
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I GEFDDYI PK + YQS+HTAV GP+ LEVQIRT MH ++E G+AAH
Sbjct: 300 IVHSLWRHIPGEFDDYIATPKTNMYQSIHTAVIGPEDKTLEVQIRTHDMHHHSELGVAAH 359
Query: 397 WLYKET 402
W YKE
Sbjct: 360 WRYKEN 365
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A IL V+DD ++ FG+ ++V ++R+ + R + G
Sbjct: 79 ETLAAAILLGVLDDEASDQEALTARFGEATLRMVGDMARIDALTDFSR-----EIPAGD- 132
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E A +LR +LLG+ +D RVVL+ +A+RLH MR P R +A++T I+ LA+
Sbjct: 133 QEEHAENLRRLLLGIAEDVRVVLVVVAERLHLMRIARDFPAEIQRRIAEQTRSIYAPLAN 192
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 170
RLG+W +K ELEDL L+P+ ++++ + L S R
Sbjct: 193 RLGIWQIKWELEDLSLRFLEPEAYKRIASQLDGRRSDRE 231
>gi|66767501|ref|YP_242263.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas campestris pv.
campestris str. 8004]
gi|66572833|gb|AAY48243.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas campestris pv.
campestris str. 8004]
Length = 723
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 237 GLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDD---------VAACYAALG 287
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +E+QIRT +MH AE G+AAH
Sbjct: 288 AVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEIQIRTHEMHAQAELGVAAH 347
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 348 WKYKEGGK 355
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 6/158 (3%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR +LL ++ D RVV I LA +L +R + RA+AQ T I LA+RLG+W +
Sbjct: 128 LRRLLLSIIHDLRVVPILLARQLARIRVADRQSEEERRALAQLTRDIHAPLANRLGIWQV 187
Query: 139 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESF 198
K ELEDL F L+P +R++ D+ R R Y + +S+ + +D
Sbjct: 188 KWELEDLAFRHLEPDTYRRIARDVDETRVARER--YIEAVKRTLSAALAQQGLRAD---V 242
Query: 199 TTFDEHVLSM-KDLLEAVVPFDILSDRRKRTKFLHDLA 235
+ +H+ S+ + + + + FD L D R + D+A
Sbjct: 243 SGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDDVA 280
>gi|21232367|ref|NP_638284.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|21114142|gb|AAM42208.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 723
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 237 GLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDD---------VAACYAALG 287
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +E+QIRT +MH AE G+AAH
Sbjct: 288 AVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEIQIRTHEMHAQAELGVAAH 347
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 348 WKYKEGGK 355
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 6/158 (3%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR +LL ++ D RVV I LA +L MR + RA+AQ T I LA+RLG+W +
Sbjct: 128 LRRLLLSIIHDLRVVPILLARQLARMRVADRQSEEERRALAQLTRDIHAPLANRLGIWQV 187
Query: 139 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESF 198
K ELEDL F L+P +R++ D+ R R Y + +S+ + +D
Sbjct: 188 KWELEDLAFRHLEPDTYRRIARDVDETRVARER--YIEAVKRTLSAALAQQGLRAD---V 242
Query: 199 TTFDEHVLSM-KDLLEAVVPFDILSDRRKRTKFLHDLA 235
+ +H+ S+ + + + + FD L D R + D+A
Sbjct: 243 SGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDDVA 280
>gi|345863304|ref|ZP_08815516.1| GTP pyrophosphokinase [endosymbiont of Tevnia jerichonana (vent
Tica)]
gi|345125765|gb|EGW55633.1| GTP pyrophosphokinase [endosymbiont of Tevnia jerichonana (vent
Tica)]
Length = 683
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 85/126 (67%), Gaps = 9/126 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK V I +++D RA+RV+V D + CY++L
Sbjct: 198 GIQAGISGRPKHIYSIWRKMQRKAVDIEQIFDLRAVRVLVED---------VADCYAVLG 248
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I GEFDDYI PK + YQS+HTAV GP+ LEVQIRT MH ++E G+AAH
Sbjct: 249 IVHSLWRHIPGEFDDYIATPKTNMYQSIHTAVIGPEDKTLEVQIRTHDMHHHSELGVAAH 308
Query: 397 WLYKET 402
W YKE
Sbjct: 309 WRYKEN 314
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A IL V+DD ++ FG+ ++V ++R+ + R + G
Sbjct: 28 ETLAAAILLGVLDDEASDQEALTARFGEATLRMVGDMARIDALTDFSR-----EIPAGD- 81
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E A +LR +LLG+ +D RVVL+ +A+RLH MR P R +A++T I+ LA+
Sbjct: 82 QEEHAENLRRLLLGIAEDVRVVLVVVAERLHLMRIARDFPAEIQRRIAEQTRSIYAPLAN 141
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 170
RLG+W +K ELEDL L+P+ ++++ + L S R
Sbjct: 142 RLGIWQIKWELEDLSLRFLEPEAYKRIASQLDGRRSDRE 180
>gi|237809484|ref|YP_002893924.1| (p)ppGpp synthetase I SpoT/RelA [Tolumonas auensis DSM 9187]
gi|237501745|gb|ACQ94338.1| (p)ppGpp synthetase I, SpoT/RelA [Tolumonas auensis DSM 9187]
Length = 743
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 85/125 (68%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K++ +YD RA+RVV +Q CY+ L
Sbjct: 241 GIDAEVYGRPKHIYSIWRKMQKKNLNFSDLYDVRAVRVVT---------KRLQDCYAALG 291
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H LW I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MH+ +E G+AAH
Sbjct: 292 IIHTLWHHIPREFDDYVANPKPNGYQSIHTVVLGPEGKTVEIQIRTEQMHQESELGVAAH 351
Query: 397 WLYKE 401
W YKE
Sbjct: 352 WKYKE 356
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+DT+ A L +++ A ++ + +FG +++L+ GV + I L + ++ +
Sbjct: 70 MDTLKAAALFPLIEPAYMTVEQVTADFGAVISQLLQGVIDIDAIRFLQQ------LSSAS 123
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ + +++R MLL MV+D R V+IKLA+R+ +R + VA+E I+ LA
Sbjct: 124 VSDAQVDNVRRMLLAMVEDVRAVVIKLAERIACLREVKNANEETRVLVAKEISNIYAPLA 183
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+ LK ELEDL F L P ++++
Sbjct: 184 NRLGIGQLKWELEDLSFRYLHPDTYKQI 211
>gi|188990613|ref|YP_001902623.1| GTP diphosphokinase [Xanthomonas campestris pv. campestris str.
B100]
gi|167732373|emb|CAP50565.1| GTP diphosphokinase [Xanthomonas campestris pv. campestris]
Length = 770
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 284 GLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDD---------VAACYAALG 334
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +E+QIRT +MH AE G+AAH
Sbjct: 335 AVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEIQIRTHEMHAQAELGVAAH 394
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 395 WKYKEGGK 402
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 6/158 (3%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR +LL ++ D RVV I LA +L MR + RA+AQ T I LA+RLG+W +
Sbjct: 175 LRRLLLSIIHDLRVVPILLARQLARMRVADRQSEEERRALAQLTRDIHAPLANRLGIWQV 234
Query: 139 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESF 198
K ELEDL F L+P +R++ D+ R R Y + +S+ + +D
Sbjct: 235 KWELEDLAFRHLEPDTYRRIARDVDETRVARER--YIEAVKRTLSAALAQQGLRAD---V 289
Query: 199 TTFDEHVLSM-KDLLEAVVPFDILSDRRKRTKFLHDLA 235
+ +H+ S+ + + + + FD L D R + D+A
Sbjct: 290 SGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDDVA 327
>gi|397687585|ref|YP_006524904.1| GTP pyrophosphokinase [Pseudomonas stutzeri DSM 10701]
gi|395809141|gb|AFN78546.1| GTP pyrophosphokinase [Pseudomonas stutzeri DSM 10701]
Length = 747
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 84/126 (66%), Gaps = 9/126 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPEIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTLAMHEEAELGVCAH 365
Query: 397 WLYKET 402
W YK T
Sbjct: 366 WRYKGT 371
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 83/147 (56%), Gaps = 4/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VA +++ V + L + + FG VAKL+ GV R++ I+ L + + T
Sbjct: 83 DSLVAAVIYRGVREGKVQLADVHQRFGPVVAKLIEGVLRMAAISASLNPRESLVLGSQT- 141
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +LR ML+ MVDD RV LIKLA+R +R + K VA+E I+ LA
Sbjct: 142 ---QVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDDKRHRVAREVFDIYAPLAH 198
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P+ ++++
Sbjct: 199 RLGIGHIKWELEDLSFRYLEPEQYKQI 225
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 27/150 (18%)
Query: 551 IQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLR 610
+QI L EE+E ++G V+S SSD K+ LR +L
Sbjct: 347 VQIRTLAMHEEAELGVCAHWRYKGTDVNS-----SSDHY---------EEKIAWLRQVLE 392
Query: 611 WEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKV-- 668
W E+L +GG A+ + P V + P+G + L G+T D A +V
Sbjct: 393 WHEEL--------GDIGGLADQLRVDIEPDRVYVFT-PDGHAIDLPKGATPLDFAYRVHT 443
Query: 669 --GLEGKLVLVNGQLVLPNTELKDGDIVEV 696
G + VNG++V N L+ G+ VE+
Sbjct: 444 EIGHNCRGAKVNGRIVPLNYSLQTGEQVEI 473
>gi|384428927|ref|YP_005638287.1| GTP pyrophosphokinase (ATP:GTP 3-pyrophosphotransferase)(ppGpp
synthetase I) [Xanthomonas campestris pv. raphani 756C]
gi|341938030|gb|AEL08169.1| GTP pyrophosphokinase (ATP:GTP 3-pyrophosphotransferase)(ppGpp
synthetase I) [Xanthomonas campestris pv. raphani 756C]
Length = 719
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 233 GLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDD---------VAACYAALG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +E+QIRT +MH AE G+AAH
Sbjct: 284 AVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEIQIRTHEMHAQAELGVAAH 343
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 344 WKYKEGGK 351
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 6/171 (3%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR + RA+AQ T I
Sbjct: 111 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLARMRVADRQSEEERRALAQLTRDI 170
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSP 185
LA+RLG+W +K ELEDL F L+P +R++ D+ R R Y + +S+
Sbjct: 171 HAPLANRLGIWQVKWELEDLAFRHLEPDTYRRIARDVDETRVARER--YIEAVKRTLSAA 228
Query: 186 PLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRRKRTKFLHDLA 235
+ +D + +H+ S+ + + + + FD L D R + D+A
Sbjct: 229 LAQQGLRAD---VSGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDDVA 276
>gi|58581359|ref|YP_200375.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas oryzae pv. oryzae
KACC 10331]
gi|58425953|gb|AAW74990.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas oryzae pv. oryzae
KACC 10331]
Length = 765
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 258 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 258 VARERYLEAVKRTLSAALAQQGLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 317
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 318 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 368
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 369 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 397
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR L + A+AQ T I
Sbjct: 157 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLSRMRVADRLSKEQRHALAQLTRDI 216
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W +K ELEDL F L+P +R++
Sbjct: 217 HAPLANRLGIWQVKWELEDLAFRHLEPDTYRRI 249
>gi|289662001|ref|ZP_06483582.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas campestris pv.
vasculorum NCPPB 702]
Length = 719
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 258 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 212 VARERYLEAVKRTLSAALAQQGLGAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 271
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 272 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 322
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 323 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 351
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR L + RA+AQ T I
Sbjct: 111 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLSRMRVADRLSEEQRRALAQLTRDI 170
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 171 HAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 203
>gi|289667030|ref|ZP_06488105.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 719
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 258 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 212 VARERYLEAVKRTLSAALAQQGLGAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 271
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 272 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 322
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 323 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 351
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR L + RA+AQ T I
Sbjct: 111 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLSRMRVADRLSEEQRRALAQLTRDI 170
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 171 HAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 203
>gi|348589862|ref|YP_004874324.1| GTP pyrophosphokinase [Taylorella asinigenitalis MCE3]
gi|347973766|gb|AEP36301.1| GTP pyrophosphokinase [Taylorella asinigenitalis MCE3]
Length = 761
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 90/135 (66%), Gaps = 9/135 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K ++SI++KM+ K + +YD A+RV+V ++ CY+ L
Sbjct: 252 GIQSDVSGRAKHIFSIYNKMKNKSLKFEDLYDLLAIRVIVQNERD---------CYTTLS 302
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH + P+ +FDDYI PKP+GY+SLHT V+ +G+ EVQIRTQKMHE+AE+G+AAH
Sbjct: 303 YVHSNYHPVMEQFDDYIARPKPNGYRSLHTVVRDDNGAVFEVQIRTQKMHEFAEYGMAAH 362
Query: 397 WLYKETGNKLQSISS 411
W YKE G K ++S+
Sbjct: 363 WRYKEAGAKGGTVSA 377
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
VVA D + + + I ++FG+E+ LV G L + ++ + Q L
Sbjct: 81 VVAAPDSDHITEQAKFKTKIMDKFGEEIFDLVEGAQTLKRVG-IVAHQASLPTAQQELYQ 139
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMR----TIYALPPAKARAVAQETLLIWCSL 129
+E LR MLL M D R+VLI+LA RL +R + PP Q+ ++ L
Sbjct: 140 QEL--LRKMLLAMATDLRIVLIRLASRLQTLRWFVDSKLVCPPE----FLQQNRTLYAPL 193
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
A+RLG+W +K ELEDL F P+ +R++ L + + R ++
Sbjct: 194 ANRLGIWQIKWELEDLSFRFENPETYREIANRLEATRAEREQL 236
>gi|399116544|emb|CCG19351.1| GTP pyrophosphokinase [Taylorella asinigenitalis 14/45]
Length = 761
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 90/135 (66%), Gaps = 9/135 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K ++SI++KM+ K + +YD A+RV+V ++ CY+ L
Sbjct: 252 GIQSDVSGRAKHIFSIYNKMKNKSLKFEDLYDLLAIRVIVQNERD---------CYTTLS 302
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH + P+ +FDDYI PKP+GY+SLHT V+ +G+ EVQIRTQKMHE+AE+G+AAH
Sbjct: 303 YVHSNYHPVMEQFDDYIARPKPNGYRSLHTVVRDDNGAVFEVQIRTQKMHEFAEYGMAAH 362
Query: 397 WLYKETGNKLQSISS 411
W YKE G K ++S+
Sbjct: 363 WRYKEAGAKGGTVSA 377
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
VVA D + + + I ++FG+E+ LV G L + ++ + Q L
Sbjct: 81 VVAAPDSDHISEQAKFKTKIMDKFGEEIFDLVEGAQTLKRVG-IVAHQASLPTAQQELYQ 139
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMR----TIYALPPAKARAVAQETLLIWCSL 129
+E LR MLL M D R+VLI+LA RL +R + PP Q+ ++ L
Sbjct: 140 QEL--LRKMLLAMATDLRIVLIRLASRLQTLRWFVDSKLVCPPE----FLQQNRTLYAPL 193
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
A+RLG+W +K ELEDL F P+ +R++ L S + R ++
Sbjct: 194 ANRLGIWQIKWELEDLSFRFENPETYREIANRLESTRAEREQL 236
>gi|372270282|ref|ZP_09506330.1| GTP pyrophosphokinase [Marinobacterium stanieri S30]
Length = 758
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 83/119 (69%), Gaps = 9/119 (7%)
Query: 284 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 343
R K +YSI+ KM+RK + ++VYD RA+R++V P I+ CY++L IVH LW
Sbjct: 265 GRAKHIYSIWRKMQRKSIDFNQVYDVRAVRILV---------PEIRDCYTVLGIVHGLWR 315
Query: 344 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 402
I EFDDYI +PKP+GY+SLHTAV GP+G LE+QIRT MHE AE G+ AH LYK T
Sbjct: 316 NIPHEFDDYIASPKPNGYRSLHTAVFGPEGKVLEIQIRTFSMHEEAELGVCAHHLYKGT 374
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+VA +L+ V + SL ++E FG +A L+ GV +++ I R++ R +
Sbjct: 84 ETLVAAVLYRSVRERKLSLQQVQERFGATIAGLIDGVLQMAAIGS--RKNPRSEDSVLGA 141
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R ML+ M+DD RV LIK+A+R +R + K VA+E I+ LA
Sbjct: 142 STAQIDNVRKMLVAMIDDVRVALIKIAERTCAIRGVKNSDRKKRYLVAREVFDIYAPLAH 201
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L+P ++ +
Sbjct: 202 RLGIGHIKWELEDLSFRYLKPNDYKHI 228
>gi|296135844|ref|YP_003643086.1| (p)ppGpp synthetase I SpoT/RelA [Thiomonas intermedia K12]
gi|295795966|gb|ADG30756.1| (p)ppGpp synthetase I, SpoT/RelA [Thiomonas intermedia K12]
Length = 738
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 77/121 (63%), Gaps = 9/121 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ K + +V D RALR++VGD + CY+ L +VH +W
Sbjct: 243 RPKHIYSIWRKMQGKHLQFEQVMDLRALRIIVGD---------VSACYAALSVVHAMWAS 293
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+ GEFDDYI PKP+GYQSLHT V+ G E+QIRT MH +AE G AAHW YKE G
Sbjct: 294 LPGEFDDYIAKPKPNGYQSLHTVVRTDSGQIFEIQIRTAAMHAHAEQGSAAHWAYKEAGA 353
Query: 405 K 405
K
Sbjct: 354 K 354
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 19 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 78
L+ VV + + FG+ +A L +L ++++ R ++ L
Sbjct: 70 LNLVVPQLAHPQDQLSKHFGEALAALSVETRKLVEVSRMARG----GPDEAELRRRHTEL 125
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
+R +LLG D RV L++LA RL ++R A A E++ ++ LA+RLG+W +
Sbjct: 126 VRRLLLGFSRDLRVALLRLASRLQSLRYFTRTKQAAPAAFLAESMEVYAPLANRLGIWQV 185
Query: 139 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 183
K E+EDL F ++QP++++ D+A R RV + I+T +S
Sbjct: 186 KWEMEDLSFRLMQPEVYK----DIARKLDER-RVEREQGISTAIS 225
>gi|456063168|ref|YP_007502138.1| (P)ppGpp synthetase I, SpoT/RelA [beta proteobacterium CB]
gi|455440465|gb|AGG33403.1| (P)ppGpp synthetase I, SpoT/RelA [beta proteobacterium CB]
Length = 679
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 86/132 (65%), Gaps = 12/132 (9%)
Query: 270 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 329
++ ++I G + R K +YSI+ KM+ K + +YD RA RV+V D ++
Sbjct: 204 LTAAHIQG---EVQGRPKHIYSIWKKMQGKSLDFANLYDVRAFRVLVDD---------VK 251
Query: 330 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 389
CY++L IVH +W P+ EFDDYI PKP+GYQSLHT V G+A E+Q+RT +MH+ A
Sbjct: 252 SCYAILGIVHNVWQPVPREFDDYIARPKPNGYQSLHTVVMDEHGTAFEIQVRTNEMHQQA 311
Query: 390 EHGLAAHWLYKE 401
E+GLAAHW YKE
Sbjct: 312 EYGLAAHWRYKE 323
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 74/137 (54%), Gaps = 15/137 (10%)
Query: 32 SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL---GHEEANDLRVMLLGMVD 88
S+ + GDE AKL+ G L L R N G L G EE LR MLL D
Sbjct: 57 SLTKLIGDESAKLLIGYRGLRQAQAKLVR------NDGGLSISGQEEM--LRKMLLAFGD 108
Query: 89 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 148
D RVVLI LA RL +R I +A AQE L I SLA+RLG+W +K E+EDL F
Sbjct: 109 DLRVVLIYLASRLQTLRWITQEKLEMPKAWAQEILNIDASLANRLGIWQMKWEMEDLAFR 168
Query: 149 VLQPQIFRKMRADLASM 165
VL P+I+R D+A M
Sbjct: 169 VLSPEIYR----DIAKM 181
>gi|424776494|ref|ZP_18203475.1| GTP pyrophosphokinase [Alcaligenes sp. HPC1271]
gi|422888314|gb|EKU30703.1| GTP pyrophosphokinase [Alcaligenes sp. HPC1271]
Length = 756
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 83/124 (66%), Gaps = 9/124 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K ++SI++KMR K + +++D RALRV+V D+ + CY L +VH L
Sbjct: 244 VSGRPKHIFSIWNKMRNKHLDFDQLFDLRALRVIVDDE---------RSCYHTLAVVHSL 294
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ EFDDYI PKP+GY+SLHT + G E+QIRT+ MH++AE+G+AAHW YKE
Sbjct: 295 WTPVPEEFDDYISRPKPNGYRSLHTVIADAQGRCYEIQIRTRDMHQFAEYGMAAHWRYKE 354
Query: 402 TGNK 405
G +
Sbjct: 355 AGAQ 358
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 5/130 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+++ FG EV LV G L + L + + + T G ++ R MLL M D R+
Sbjct: 89 VQKAFGAEVMTLVRGSRALYRLGSLTGQAK-----EQTGGGDQKEMKRKMLLAMAADLRI 143
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
V+++LA RL ++R A+ETL ++ LA+RLG+W +K E+EDL F L P
Sbjct: 144 VMMRLASRLQSLRWYRQSKTVCPVEFARETLELYTPLANRLGIWQIKWEMEDLAFRFLNP 203
Query: 153 QIFRKMRADL 162
++++ + + L
Sbjct: 204 EVYKNIASKL 213
>gi|410693584|ref|YP_003624205.1| putative (P)ppGpp synthetase I, SpoT/RelA [Thiomonas sp. 3As]
gi|294340008|emb|CAZ88372.1| putative (P)ppGpp synthetase I, SpoT/RelA [Thiomonas sp. 3As]
Length = 738
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 77/121 (63%), Gaps = 9/121 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ K + +V D RALR++VGD + CY+ L +VH +W
Sbjct: 243 RPKHIYSIWRKMQGKHLQFEQVMDLRALRIIVGD---------VSACYAALSVVHAMWAA 293
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+ GEFDDYI PKP+GYQSLHT V+ G E+QIRT MH +AE G AAHW YKE G
Sbjct: 294 LPGEFDDYIAKPKPNGYQSLHTVVRTDSGQIFEIQIRTAAMHAHAEQGSAAHWAYKEAGA 353
Query: 405 K 405
K
Sbjct: 354 K 354
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 19 LHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAND 78
L+ VV + + FG+ +A L +L ++++ R ++ L
Sbjct: 70 LNLVVPQLAHPQDQLSKHFGEALAALSVETRKLVEVSRMARG----GPDEAELRRRHTEL 125
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
+R +LLG D RV L++LA RL ++R A A E++ ++ LA+RLG+W +
Sbjct: 126 VRRLLLGFSRDLRVALLRLASRLQSLRYFTRTKQAAPAAFLAESMEVYAPLANRLGIWQV 185
Query: 139 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 183
K E+EDL F ++QP++++ D+A R R+ + I+T +S
Sbjct: 186 KWEMEDLSFRLMQPEVYK----DIARKLDER-RIEREQGISTAIS 225
>gi|163847013|ref|YP_001635057.1| RelA/SpoT family protein [Chloroflexus aurantiacus J-10-fl]
gi|163668302|gb|ABY34668.1| RelA/SpoT family protein [Chloroflexus aurantiacus J-10-fl]
Length = 788
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 99/162 (61%), Gaps = 12/162 (7%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+++ A +LHDVV+D+ + IE+ FG +VA LV GV++LS +
Sbjct: 131 TESIAAALLHDVVEDSGVPISVIEQFFGQQVASLVDGVTKLS------------GYESKS 178
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A R +++ DDPRVVLIKLADRLHNMRTI+A PP K + VA+ETL I+ LA
Sbjct: 179 KEEAQAGTYRKLIIASADDPRVVLIKLADRLHNMRTIHATPPQKQQRVARETLEIYAPLA 238
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
RLG+W +K+ELEDL F L P ++++ LA R+R+
Sbjct: 239 HRLGMWQMKSELEDLAFKTLHPDRYQEIARGLAMRKEARDRI 280
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 82/130 (63%), Gaps = 7/130 (5%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ R K +YSI+ KM RK V + ++YD A+R++V D N + CY L
Sbjct: 296 GIKAEVTGRSKHIYSIWRKMERKGVPLERIYDQLAVRIIVDDPNNE-----VGACYQALG 350
Query: 337 IVH--RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
+VH W P+ EFDDYI PK S Y+S+HT V P+G EVQIR+ KMHE AEHG+A
Sbjct: 351 VVHGKMNWTPVMQEFDDYIAAPKESSYRSIHTTVILPEGLHCEVQIRSTKMHEEAEHGIA 410
Query: 395 AHWLYKETGN 404
AHW YKE N
Sbjct: 411 AHWRYKEGFN 420
>gi|168004491|ref|XP_001754945.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694049|gb|EDQ80399.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 573
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 97/162 (59%), Gaps = 19/162 (11%)
Query: 251 GIALTSLVACEEALEKELLISTSYIPGME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 309
G+ ++S+ ++AL E G++ V LS R K+LYSI+ KM +K ++ D
Sbjct: 239 GLVMSSIRDLDDALRNE---------GVQFVDLSGRPKNLYSIYKKMMKKKRTPEEILDV 289
Query: 310 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 369
R LR++V D+N CY L IVH+LW + G+ DYI + KP+GY+SLHT V
Sbjct: 290 RGLRLIVSDENN---------CYEALQIVHKLWKQVPGKSKDYIAHSKPNGYKSLHTVVI 340
Query: 370 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISS 411
G DG LEVQIRT KMH AE+GLAAHW YKE + + SS
Sbjct: 341 GSDGYPLEVQIRTMKMHHQAEYGLAAHWRYKEDNTQHSAFSS 382
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 102/160 (63%), Gaps = 11/160 (6%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
V AG+LHD +DD+ SL + G++VA LV+GVS+LS +QL R +
Sbjct: 91 VAAGLLHDAIDDSNLSLQLLRGALGEDVASLVSGVSKLSEFSQLARDSNTVR------DP 144
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
EA+ LR M+L MVD RVVLIK+ADRLHN+RT+ ALP K +A ETL I+ LA+RL
Sbjct: 145 TEADSLRTMILAMVD-VRVVLIKIADRLHNLRTLGALPYLKQIGIANETLEIFAPLANRL 203
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 173
G+W+ KAELEDLCF L+P + DL++ S R R G
Sbjct: 204 GIWSWKAELEDLCFKCLKPVEHQ----DLSARLSERCREG 239
>gi|127512134|ref|YP_001093331.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella loihica PV-4]
gi|126637429|gb|ABO23072.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella loihica PV-4]
Length = 734
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 284 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 343
R K +YSI+ KMR KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 GRPKHIYSIWKKMRGKDLTFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWH 300
Query: 344 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 403
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 301 HIPKEFDDYVANPKPNGYQSIHTIVVGPEGKTVEIQIRTEQMHEDAELGVAAHWKYKEGT 360
Query: 404 NKLQS 408
QS
Sbjct: 361 TGKQS 365
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A ++ V D + + E FGD++ LV V + I L VN+ +
Sbjct: 72 IETLQAAVIFVVFDAGLMTEEQMLELFGDKLTTLVNSVVTMDAIGAL-------KVNEQS 124
Query: 71 LGHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
E + +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ L
Sbjct: 125 RNAEPQIDNIRKMLLAMVEDVRAVVIKLAERICLLREVKNADEETRVLLAREIADIYAPL 184
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
A+RLG+ LK ELED+ F L P ++ + L
Sbjct: 185 ANRLGIGQLKWELEDISFRYLHPDTYKDIAKQL 217
>gi|222524836|ref|YP_002569307.1| (p)ppGpp synthetase I SpoT/RelA [Chloroflexus sp. Y-400-fl]
gi|222448715|gb|ACM52981.1| (p)ppGpp synthetase I, SpoT/RelA [Chloroflexus sp. Y-400-fl]
Length = 788
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 99/162 (61%), Gaps = 12/162 (7%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+++ A +LHDVV+D+ + IE+ FG +VA LV GV++LS +
Sbjct: 131 TESIAAALLHDVVEDSGVPISVIEQFFGQQVASLVDGVTKLS------------GYESKS 178
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A R +++ DDPRVVLIKLADRLHNMRTI+A PP K + VA+ETL I+ LA
Sbjct: 179 KEEAQAGTYRKLIIASADDPRVVLIKLADRLHNMRTIHATPPQKQQRVARETLEIYAPLA 238
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
RLG+W +K+ELEDL F L P ++++ LA R+R+
Sbjct: 239 HRLGMWQMKSELEDLAFKTLHPDRYQEIARGLAMRKEARDRI 280
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 82/130 (63%), Gaps = 7/130 (5%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ R K +YSI+ KM RK V + ++YD A+R++V D N + CY L
Sbjct: 296 GIKAEVTGRSKHIYSIWRKMERKGVPLERIYDQLAVRIIVDDPNNE-----VGACYQALC 350
Query: 337 IVH--RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
+VH W P+ EFDDYI PK S Y+S+HT V P+G EVQIR+ KMHE AEHG+A
Sbjct: 351 VVHGKMNWTPVMQEFDDYIAAPKESSYRSIHTTVILPEGLHCEVQIRSTKMHEEAEHGIA 410
Query: 395 AHWLYKETGN 404
AHW YKE N
Sbjct: 411 AHWRYKEGFN 420
>gi|288958019|ref|YP_003448360.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Azospirillum sp. B510]
gi|288910327|dbj|BAI71816.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Azospirillum sp. B510]
Length = 719
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 114/390 (29%), Positives = 171/390 (43%), Gaps = 110/390 (28%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ +LHD V+D +L IE FG E+A+LV GV++LS + +N Q
Sbjct: 65 TIATALLHDTVEDTVATLEDIERVFGKEIARLVDGVTKLSRLE--------LNSEQA--- 113
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R ++L M +++ ++ LA R
Sbjct: 114 -KQAENFRKLVLAM--------------------------------SEDIRVLLVKLADR 140
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTA 192
L MR L + P R +R I S PL ER
Sbjct: 141 L----------------------HNMRT-LFHLKKPEKRRRIARETIEIYS--PLAERIG 175
Query: 193 SDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAK-SSEAQKKAKVVQDAG 251
+ +KD L+ + ++ D R L LA+ SE + + + +
Sbjct: 176 ------------MHKIKDELDDLAFAELNPD--ARDSILAQLARLRSEGENRVQTI---- 217
Query: 252 IALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARA 311
+T L A L++ +P + T+S R KS YSI+ K++RK+V ++ D A
Sbjct: 218 --ITELRA---------LLAAEGLP--DATVSGREKSAYSIWRKLQRKNVSFEQLSDIMA 264
Query: 312 LRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP 371
R+ VG ++ CY L +VH + + G F DYI PKP+GY+SLHT V GP
Sbjct: 265 FRITVG---------SVGECYQALGLVHAHYPVVPGRFKDYISTPKPNGYRSLHTGVIGP 315
Query: 372 DGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ +EVQIRTQ MHE AE G+AAHW YK+
Sbjct: 316 GRNRIEVQIRTQDMHEIAELGVAAHWAYKQ 345
>gi|119503992|ref|ZP_01626073.1| RelA/SpoT protein [marine gamma proteobacterium HTCC2080]
gi|119459995|gb|EAW41089.1| RelA/SpoT protein [marine gamma proteobacterium HTCC2080]
Length = 744
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 83/121 (68%), Gaps = 9/121 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM+RK +G +V+D RALR++V D + CY L +VH +
Sbjct: 261 ITGRAKHIYSIWRKMQRKGIGFSQVHDIRALRILVDD---------VAACYQTLGVVHGM 311
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W I EFDDYI +PK +GY+SLHTAV GP+G LEVQIRT++MHE AE G+ AHW YK
Sbjct: 312 WRNIPNEFDDYIASPKENGYRSLHTAVIGPEGKILEVQIRTEEMHEEAELGVCAHWRYKA 371
Query: 402 T 402
+
Sbjct: 372 S 372
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 7/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D ++AG L+ V S+ ++ FGD+VA L+ GV R++ ++ L + L
Sbjct: 83 DALIAGFLYRSVRQQVISIDTLRHRFGDKVASLLDGVLRMAAVSDLTDLS-----DVPVL 137
Query: 72 GHEEANDL--RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
G A ++ R ML+ +VDD RV LIKLA+R MR + + + +A E ++ L
Sbjct: 138 GQSAAPNINIRRMLVAIVDDVRVALIKLAERTVAMRGLKGAEEHRQQRIAWEVFNVYAPL 197
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A RLG+ LK ELEDL F + ++
Sbjct: 198 AHRLGVGHLKWELEDLSFRYTNKDAYHRI 226
>gi|158335664|ref|YP_001516836.1| ppGpp 3'-pyrophosphohydrolase [Acaryochloris marina MBIC11017]
gi|158305905|gb|ABW27522.1| ppGpp 3'-pyrophosphohydrolase [Acaryochloris marina MBIC11017]
Length = 753
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 95/156 (60%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D + +IE EFG EV +LV GV++LS N + R
Sbjct: 83 IAAGFLHDVVEDTDVTPETIEAEFGLEVRQLVEGVTKLSKFNFSTKTER----------- 131
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
EA + R M L M D RV+++KLADRLHNMRT+ LPP K R +AQET ++ LA+RL
Sbjct: 132 -EAENFRRMFLAMAQDIRVIVVKLADRLHNMRTLEHLPPVKQRRIAQETRDVFAPLANRL 190
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G+W K ELEDL F L+P +R+M+ +A + R
Sbjct: 191 GIWRFKWELEDLAFKYLEPDTYRRMQQLVADKRTDR 226
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 75/124 (60%), Gaps = 9/124 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K L+SI KM R+ H++YD A+RV+V + CY L +VH
Sbjct: 251 ISGRPKHLFSISQKMERQQKEFHEIYDVAAVRVIVKTN---------EECYRALAVVHDC 301
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ PI G F DYI PK + YQSLHT V G G LEVQIRT+ MH AE+G+AAHW YKE
Sbjct: 302 FRPIPGRFKDYIGLPKSNRYQSLHTVVIGLGGRPLEVQIRTEAMHHIAEYGIAAHWKYKE 361
Query: 402 TGNK 405
+ N+
Sbjct: 362 SSNQ 365
>gi|238926103|ref|ZP_04657863.1| GTP diphosphokinase [Selenomonas flueggei ATCC 43531]
gi|238885993|gb|EEQ49631.1| GTP diphosphokinase [Selenomonas flueggei ATCC 43531]
Length = 739
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 18/158 (11%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K YSI+ KM+R + I+++YD A+RV+V ++ CY +L
Sbjct: 234 GIEAEIKGRAKHFYSIYRKMKRDNKSINEIYDLSAVRVLVS---------TVKDCYGVLG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H +W PI G F DYI PK +GYQSLHT V +G LE+QIRT+ MH+ +E G+AAH
Sbjct: 285 VIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-TEGDPLEIQIRTKAMHQISEFGIAAH 343
Query: 397 WLYKETGNKLQSISSMDESDIEAS-----SSLSKDTDD 429
W YKE G +S+ + DE+D + S SL K+ DD
Sbjct: 344 WKYKEAG---RSVGAGDENDQKMSWLRQMVSLQKEYDD 378
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 85/144 (59%), Gaps = 12/144 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A LHDVV+D +L IE FG V L+ GV++L I + + ++
Sbjct: 70 ETICAAFLHDVVEDTQTTLEEIEAVFGKNVMTLIDGVTKLGRIESMSKEDVKLE------ 123
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ R M L M D RV++IKLADRLHNMRT+ + K + +A+ETL ++ LA+
Sbjct: 124 ------NYRKMFLAMAKDIRVIMIKLADRLHNMRTLKYMREDKRQRIARETLEVYAPLAN 177
Query: 132 RLGLWALKAELEDLCFAVLQPQIF 155
RLG+ +KAELEDLC L+P+ +
Sbjct: 178 RLGISGIKAELEDLCLRYLEPEAY 201
>gi|40063134|gb|AAR37981.1| GTP pyrophosphokinase [uncultured marine bacterium 561]
Length = 744
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 83/121 (68%), Gaps = 9/121 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM+RK +G +V+D RALR++V D + CY L +VH +
Sbjct: 261 ITGRAKHIYSIWRKMQRKGIGFSQVHDIRALRILVDD---------VAACYQTLGVVHGM 311
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W I EFDDYI +PK +GY+SLHTAV GP+G LEVQIRT++MHE AE G+ AHW YK
Sbjct: 312 WRNIPNEFDDYIASPKENGYRSLHTAVIGPEGKILEVQIRTEEMHEEAELGVCAHWRYKA 371
Query: 402 T 402
+
Sbjct: 372 S 372
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D ++AG L+ V S+ +++ FGD+VA L+ GV R++ ++ L + L
Sbjct: 83 DALIAGFLYRSVRQQVISIDTLKHRFGDKVASLLDGVLRMAAVSDLTDLS-----DVPVL 137
Query: 72 GHEEANDL--RVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
G A ++ R ML+ +VDD RV LIKLA+R MR + + + +A E ++ L
Sbjct: 138 GQSAAPNINIRRMLVAIVDDVRVALIKLAERTVAMRGLKGAEEHRQQRIAWEVFNVYAPL 197
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A RLG+ LK ELEDL F + ++
Sbjct: 198 AHRLGVGHLKWELEDLSFRYTNKDAYHRI 226
>gi|390989283|ref|ZP_10259582.1| RelA/SpoT family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|372556041|emb|CCF66557.1| RelA/SpoT family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
Length = 719
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 258 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 212 VARERYLEAVKRTLSAALVQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 271
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 272 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 322
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 323 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 351
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR L + RA+AQ T I
Sbjct: 111 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLARMRVADRLSEDERRALAQLTRDI 170
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 171 HAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 203
>gi|406942692|gb|EKD74870.1| hypothetical protein ACD_44C00312G0002 [uncultured bacterium]
Length = 728
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K +YSI+ KM+RK VG ++YD A+RV+V ++ CY +L +VH L
Sbjct: 249 ISGRAKHIYSIYRKMKRKSVGYEEIYDVSAVRVLVD---------TVEQCYQVLSVVHHL 299
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI EFDDYI +PK +GY SLHTAV GP +EVQIRT +MH +E G+AAHW+YKE
Sbjct: 300 WEPIAKEFDDYIAHPKANGYASLHTAVLGPQKRNVEVQIRTIEMHNVSELGVAAHWMYKE 359
Query: 402 TGNK 405
+
Sbjct: 360 GATR 363
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 85/148 (57%), Gaps = 11/148 (7%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V+T+V +L++ V +A L I E+ V+ L+AGV ++ +N L +H I++
Sbjct: 77 VETLVTALLYNTVRNADLRLEDISEQVSKGVSNLLAGVLQMEGVN-LWHKHHEIHIE--- 132
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+LR MLL MV D R V IKLA+RL +R L + + +A E + I+ LA
Sbjct: 133 -------NLRKMLLVMVQDVRGVFIKLAERLCVLRYASTLNKVEQQKIAHEVMDIYSPLA 185
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLGL LK ELEDL F L+PQ ++K+
Sbjct: 186 NRLGLGQLKWELEDLSFRYLEPQTYKKL 213
>gi|418516885|ref|ZP_13083055.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|410706482|gb|EKQ64942.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 723
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 258 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 216 VARERYLEAVKRTLSAALVQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 275
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 276 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 326
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 327 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 355
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR L + RA+AQ T I
Sbjct: 115 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLARMRVADRLSEDERRALAQLTRDI 174
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 175 HAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 207
>gi|304436591|ref|ZP_07396560.1| GTP diphosphokinase [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304370287|gb|EFM23943.1| GTP diphosphokinase [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 739
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 18/158 (11%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K YSI+ KM+R + I+++YD A+RV+V ++ CY +L
Sbjct: 234 GIEAEIKGRAKHFYSIYRKMKRDNKSINEIYDLSAVRVLVS---------TVKDCYGVLG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H +W PI G F DYI PK +GYQSLHT V +G LE+QIRT+ MH+ +E G+AAH
Sbjct: 285 VIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-TEGDPLEIQIRTKAMHQISEFGIAAH 343
Query: 397 WLYKETGNKLQSISSMDESDIEAS-----SSLSKDTDD 429
W YKE G +S+ + DE+D + S SL K+ DD
Sbjct: 344 WKYKEAG---RSVGAGDENDQKMSWLRQMVSLQKEYDD 378
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 85/144 (59%), Gaps = 12/144 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A LHDVV+D +L IE FG V L+ GV++L I + + ++
Sbjct: 70 ETICAAFLHDVVEDTQTTLEEIEAVFGKNVMTLIDGVTKLGRIESMSKEDVKLE------ 123
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ R M L M D RV++IKLADRLHNMRT+ + K + +A+ETL ++ LA+
Sbjct: 124 ------NYRKMFLAMAKDIRVIMIKLADRLHNMRTLKYMREDKRQRIARETLEVYAPLAN 177
Query: 132 RLGLWALKAELEDLCFAVLQPQIF 155
RLG+ +KAELEDLC L+P+ +
Sbjct: 178 RLGISGIKAELEDLCLRYLEPEAY 201
>gi|347538471|ref|YP_004845895.1| (p)ppGpp synthetase I SpoT/RelA [Pseudogulbenkiania sp. NH8B]
gi|345641648|dbj|BAK75481.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudogulbenkiania sp. NH8B]
Length = 733
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 87/122 (71%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KMR+K++ ++YD RA+RV+V +++ CY++L ++H +
Sbjct: 257 VAGRPKHIYSIWKKMRKKNLDFSELYDIRAVRVLV---------ESVKDCYTVLGLIHSM 307
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ GEFDDYI +PK + Y+SLHTAV GP+ +EVQIRT MHE+AE G+AAHW YKE
Sbjct: 308 WQPVPGEFDDYISHPKANDYRSLHTAVIGPEDRVIEVQIRTFDMHEHAEFGVAAHWRYKE 367
Query: 402 TG 403
G
Sbjct: 368 GG 369
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 83/147 (56%), Gaps = 3/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D VVA +L V D + + EF V LV GV+R+ + ++ R + ++
Sbjct: 79 DAVVATLLFAVPDFREDWHEWMTNEFNPTVVVLVDGVNRVRRLTEIARIDK---LDTPEE 135
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A +R MLL MV D RVVLIKLA R M + P A R +AQET+ ++ LA+
Sbjct: 136 RARQAETMRKMLLAMVADIRVVLIKLAWRTQTMHYLTECPEAVRRTIAQETMDVFAPLAN 195
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+W +K ELEDL F ++P+ ++K+
Sbjct: 196 RLGVWQIKWELEDLAFRHIEPENYKKI 222
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 595 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 654
+A+ K+ LR +L W E++ + L + + + + + V PNG ++
Sbjct: 372 DAAYEEKISWLRQLLDWREEVSDRSGLTDAF---------KTELFSDTIYVLTPNGRVLA 422
Query: 655 LRSGSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVEV 696
L SG+TA D A + G + V GQ+V +T L++G VE+
Sbjct: 423 LPSGATAIDFAYAIHTDLGHRCRGAKVEGQIVPLSTPLQNGQRVEI 468
>gi|21243840|ref|NP_643422.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas axonopodis pv. citri
str. 306]
gi|21109438|gb|AAM37958.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas axonopodis pv. citri
str. 306]
Length = 727
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 258 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 220 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 279
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 280 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 330
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 331 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 359
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR L + RA+AQ T I
Sbjct: 119 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLARMRVADRLSEDERRALAQLTRDI 178
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 179 HAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 211
>gi|418521587|ref|ZP_13087630.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410702432|gb|EKQ60938.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
Length = 727
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 258 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 220 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 279
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 280 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 330
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 331 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 359
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR L + RA+AQ T I
Sbjct: 119 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLARMRVADRLSEDERRALAQLTRDI 178
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 179 HAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 211
>gi|146328161|emb|CAM58078.1| hypothetical protein [uncultured marine microorganism]
Length = 587
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 86/127 (67%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK ++ ++D RA+R++V D + CYS L
Sbjct: 105 GVKADISGRPKHIYSIWRKMQRKGSDLNHIFDVRAVRLLVDD---------VSECYSALG 155
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW + GEF+DYI NPK + Y+SLHTAV GP+G +EVQIRT +MH AE G+AAH
Sbjct: 156 VVHNLWSYLPGEFNDYIANPKENDYRSLHTAVIGPEGRTVEVQIRTHEMHRQAELGVAAH 215
Query: 397 WLYKETG 403
W YKE G
Sbjct: 216 WRYKEGG 222
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 51/75 (68%)
Query: 84 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 143
L +V D R+VL+++A++L+ +R P + +A+A ET I+ +LA+RLG+W LK ELE
Sbjct: 1 LAVVSDVRLVLVRIAEQLYRLRCAKNAPKNEQQALAIETREIYAALANRLGVWQLKWELE 60
Query: 144 DLCFAVLQPQIFRKM 158
DL F + P ++++
Sbjct: 61 DLAFRYIDPDTYKQI 75
>gi|381169784|ref|ZP_09878947.1| RelA/SpoT family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|380689802|emb|CCG35434.1| RelA/SpoT family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
Length = 719
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 258 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 212 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 271
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 272 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 322
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 323 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 351
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR L + RA+AQ T I
Sbjct: 111 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLARMRVADRLSEDERRALAQLTRDI 170
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 171 HAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 203
>gi|218296101|ref|ZP_03496870.1| (p)ppGpp synthetase I, SpoT/RelA [Thermus aquaticus Y51MC23]
gi|218243478|gb|EED10007.1| (p)ppGpp synthetase I, SpoT/RelA [Thermus aquaticus Y51MC23]
Length = 726
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 97/150 (64%), Gaps = 7/150 (4%)
Query: 256 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
++ EEAL+++ L+ S + G EVT R K LYSI+ KM R+ + ++YD A+RV+
Sbjct: 222 AMEVLEEALKQDALLQ-SQLQGFEVT--GRPKHLYSIWKKMEREGKALEQIYDLLAVRVI 278
Query: 316 VGDK-NGTLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP 371
+ K + T + Q CY +L +VH LW PI G DYI PKP+GYQSLHT V
Sbjct: 279 LDPKPSPTEEAKGLREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIAL 338
Query: 372 DGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+G LEVQIRT++MH AE+G+AAHWLYKE
Sbjct: 339 EGLPLEVQIRTREMHRIAEYGIAAHWLYKE 368
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 94/163 (57%), Gaps = 13/163 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV AG+LHD ++D + +E FG V ++V G +++S + + L
Sbjct: 67 DTVAAGLLHDTMEDCGVAGEELERRFGPAVRRIVEGETKVSKLYKF-----------ANL 115
Query: 72 GHEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
EE A DLR M + M +D R++++KLADRLHN+RT+ +P K + +AQETL I+ L
Sbjct: 116 EGEEKRAEDLRQMFIAMAEDVRIIIVKLADRLHNLRTLEHMPEGKQKRIAQETLEIYAPL 175
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
A RLG+ +K ELEDL F L P+ ++ + A L R R+
Sbjct: 176 AHRLGMGQIKWELEDLSFRYLHPEAYQALLARLQETQEARERM 218
>gi|294626832|ref|ZP_06705424.1| Guanosine 3,5-bis-pyrophosphate synthetase [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
gi|292598846|gb|EFF42991.1| Guanosine 3,5-bis-pyrophosphate synthetase [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
Length = 719
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 258 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 212 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 271
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 272 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 322
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 323 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 351
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR L + RA+AQ T I
Sbjct: 111 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLARMRVADRLSEDERRALAQLTRDI 170
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 171 HAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 203
>gi|297564854|ref|YP_003683826.1| (p)ppGpp synthetase I SpoT/RelA [Meiothermus silvanus DSM 9946]
gi|296849303|gb|ADH62318.1| (p)ppGpp synthetase I, SpoT/RelA [Meiothermus silvanus DSM 9946]
Length = 738
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 105/175 (60%), Gaps = 14/175 (8%)
Query: 259 ACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 318
A E L+++ ++ S I G EVT R K LYSI+ KM+R+ + ++YD ALRV++
Sbjct: 236 ALEAVLQRDSVLGAS-IQGYEVT--GRTKHLYSIWKKMQREGRALEQIYDLLALRVILEP 292
Query: 319 K-NGTLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGS 374
+ L A+ Q CY +L +VH LW PI G DYI PKP+GYQSLHT V G
Sbjct: 293 RPTPNLEEKAMREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIAGSGL 352
Query: 375 ALEVQIRTQKMHEYAEHGLAAHWLYK-------ETGNKLQSISSMDESDIEASSS 422
LEVQIRT++MH+ AE+G+AAHWLYK E ++ + S+ E E SSS
Sbjct: 353 PLEVQIRTREMHQIAEYGIAAHWLYKQGLTDPEEIKRRVDWLRSIQEWQAEFSSS 407
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 98/159 (61%), Gaps = 3/159 (1%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T++AG+LHD V+D IEE FG V ++V G +++S + +L + + + +L
Sbjct: 72 ETLMAGLLHDTVEDTEVKPEDIEERFGTAVRRIVEGETKVSKLYKLAHQ---VAEERPSL 128
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ A DLR M + M +D R++++KLADRLHN+RT+ +PP K +A+ETL I+ LA
Sbjct: 129 EEQRAEDLRQMFIAMAEDVRIIIVKLADRLHNLRTLEFMPPHKQTRIARETLEIYAPLAH 188
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 170
RLG+ +K ELEDL F L+P+ + + L S + R
Sbjct: 189 RLGIGQIKWELEDLSFRYLEPEAYADLLGRLKSHRAERE 227
>gi|29654672|ref|NP_820364.1| RelA/SpoT family protein [Coxiella burnetii RSA 493]
gi|161831132|ref|YP_001597218.1| RelA/SpoT family protein [Coxiella burnetii RSA 331]
gi|29541940|gb|AAO90878.1| GTP pyrophosphokinase [Coxiella burnetii RSA 493]
gi|161762999|gb|ABX78641.1| RelA/SpoT family protein [Coxiella burnetii RSA 331]
Length = 714
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 10/128 (7%)
Query: 281 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 340
+S R K +YSIF K++RK V ++YD A+R++V +++ CY+ L IVH
Sbjct: 238 NISGRAKHIYSIFRKIQRKQVDFSEIYDTSAVRILVS---------SLEDCYTALSIVHA 288
Query: 341 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 400
LW PI EFDDYI PK +GY+S+HTAV GP+G +E+QIRT MHE AE G+AAHW YK
Sbjct: 289 LWEPIAKEFDDYIAKPKDNGYRSIHTAVIGPEGHNIEIQIRTYGMHEEAELGVAAHWKYK 348
Query: 401 ETGNKLQS 408
E G K+ S
Sbjct: 349 E-GKKVAS 355
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 82/144 (56%), Gaps = 5/144 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +L+ V + S ++ ++ G VAKL+ G R+ I+ +L R + Q +
Sbjct: 62 ETLAAALLYPTVTQSGISQEALTDQIGKSVAKLLMGTKRMETIDDMLIRSSGFSQQQNFV 121
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++LR MLL MVDD R+VLIKL++RL +R P ++ + +AQ+ + ++ LA+
Sbjct: 122 -----DNLRKMLLAMVDDVRIVLIKLSERLTTLRYSRHQPISEQKDIAQKIMDLYAPLAN 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIF 155
RLG+ K ++ED F L P +
Sbjct: 177 RLGVGQFKWQMEDWAFRYLNPNEY 200
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 601 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 660
K+ LR ++ W++++ + RQ + + + V PNG+++ L +G+T
Sbjct: 360 KINWLREVMDWQKEVSPDVKWRQ--------------IFEDHIYVFTPNGDVIDLEAGAT 405
Query: 661 AADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
D A + +G + VNG++V LK GD VE+
Sbjct: 406 PLDFAYRIHTEIGHRCRGARVNGKMVPLTRTLKTGDCVEI 445
>gi|294667037|ref|ZP_06732264.1| ATP:GTP 3-pyrophosphotransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292603194|gb|EFF46618.1| ATP:GTP 3-pyrophosphotransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 811
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 258 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 304 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 363
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 364 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 414
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 415 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 443
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR L + RA+AQ T I
Sbjct: 203 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLARMRVADRLSEDERRALAQLTRDI 262
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 263 HAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 295
>gi|212702010|ref|ZP_03310138.1| hypothetical protein DESPIG_00012 [Desulfovibrio piger ATCC 29098]
gi|212674525|gb|EEB35008.1| RelA/SpoT family protein [Desulfovibrio piger ATCC 29098]
Length = 719
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 92/141 (65%), Gaps = 13/141 (9%)
Query: 263 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 322
+L ++LL S G+E + R+K YSI+ KM+ + + + +++D A RV+V D
Sbjct: 218 SLIQDLLASN----GLEGQVYGRIKHKYSIYKKMQSQSLTLDEMHDIMAFRVLVKD---- 269
Query: 323 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 382
I+ CY++L +VH W P+ G F DYI PK +GYQSLHT V GP+G +E+QIRT
Sbjct: 270 -----IRDCYAVLGLVHSQWKPVHGRFKDYISMPKANGYQSLHTTVIGPEGERIEIQIRT 324
Query: 383 QKMHEYAEHGLAAHWLYKETG 403
++MH AEHG+AAHWLYKE G
Sbjct: 325 EEMHRQAEHGVAAHWLYKEKG 345
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 95/146 (65%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV AG+LHD V+D ++ I+++FG++VA +V GV+++S I + N+
Sbjct: 65 TVAAGLLHDTVEDTGTTIEEIDDKFGEDVADIVDGVTKISMI---------VFENKE--- 112
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A ++R M+L M D RV+++KLADRLHNM T+ P K R +AQET+ I+ LA+R
Sbjct: 113 EAQAENIRKMILAMSHDMRVLMVKLADRLHNMSTLDFQKPHKQRRIAQETMDIYAPLANR 172
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LGL+ LK +LEDL F L+P I+ ++
Sbjct: 173 LGLYLLKRQLEDLSFKYLRPDIYNQI 198
>gi|226311469|ref|YP_002771363.1| GTP pyrophosphokinase [Brevibacillus brevis NBRC 100599]
gi|226094417|dbj|BAH42859.1| GTP pyrophosphokinase [Brevibacillus brevis NBRC 100599]
Length = 723
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 84/131 (64%), Gaps = 9/131 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E +S R K +YSIF KM R++ +++YD ALR++V D I+ CY++L
Sbjct: 229 NIEAEISGRPKHIYSIFKKMTRQNKQFNEIYDLLALRIIVND---------IRDCYAVLG 279
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT MH+ AE G+AAH
Sbjct: 280 IVHTLWKPMPGRFKDYIAMPKTNMYQSLHTTVIGPKGEPLEVQIRTWDMHQTAEIGIAAH 339
Query: 397 WLYKETGNKLQ 407
W YKE + +Q
Sbjct: 340 WAYKEGKSIVQ 350
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 85/152 (55%), Gaps = 24/152 (15%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINV 66
T+ AG LHDVV+D +L + E+FG +VA LV GV++L I QL HR+
Sbjct: 66 TIAAGFLHDVVEDTEITLDHLREQFGPDVALLVDGVTKLEKIKYKSKEEQLAENHRK--- 122
Query: 67 NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 126
ML+ M D RV++IKLADRLHNMRT+ + K R ++ ETL I+
Sbjct: 123 ---------------MLVAMAQDIRVIMIKLADRLHNMRTLRHMSEEKQREISDETLEIF 167
Query: 127 CSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA RLG+ ++K ELED L PQ + ++
Sbjct: 168 APLAHRLGIASVKWELEDTALRYLNPQQYYRI 199
>gi|114320256|ref|YP_741939.1| (p)ppGpp synthetase I SpoT/RelA [Alkalilimnicola ehrlichii MLHE-1]
gi|114226650|gb|ABI56449.1| (p)ppGpp synthetase I, SpoT/RelA [Alkalilimnicola ehrlichii MLHE-1]
Length = 735
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM+RK + ++YD RALRV+V D + CY++L
Sbjct: 247 GIDAEVVGRPKHIYSIWRKMQRKGLRFEELYDLRALRVLVED---------VGTCYAVLG 297
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW I EFDDYI PK + Y+SLHTAV GP+G LEVQIRT MH+ AE G+AAH
Sbjct: 298 VVHSLWKHIPKEFDDYIATPKENNYRSLHTAVVGPEGKTLEVQIRTYAMHQEAELGIAAH 357
Query: 397 WLYKETGNK 405
W YKE G +
Sbjct: 358 WRYKEGGRQ 366
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ AG+LHD+ +LG I ++ GD+VA LVAG SR+ I++ + Q +
Sbjct: 78 TLAAGLLHDLPTLDDTALGRIRKQLGDDVAHLVAGASRMQDISRFH------DPGQLSGE 131
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
E A LR MLL M D RVV I LA+RLH++R+I LP + +AQET I+ LA+R
Sbjct: 132 SERAEGLRKMLLAMASDVRVVFITLAERLHDLRSIRDLPETLQQRIAQETRDIYAPLANR 191
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
LG+W LK ELEDL F LQP +++++ LA
Sbjct: 192 LGIWQLKWELEDLAFRYLQPDVYKQVAKLLA 222
>gi|78048800|ref|YP_364975.1| guanosine 3',5'-bis-pyrophosphate synthetase [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|78037230|emb|CAJ24975.1| Guanosine 3',5'-bis-pyrophosphate synthetase [Xanthomonas
campestris pv. vesicatoria str. 85-10]
Length = 723
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 258 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 216 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 275
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 276 VED---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 326
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 327 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 355
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR L + RA+AQ T I
Sbjct: 115 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLARMRVADRLSEDERRALAQLTRDI 174
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 175 HAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 207
>gi|346725914|ref|YP_004852583.1| Guanosine polyphosphate pyrophosphohydrolase [Xanthomonas
axonopodis pv. citrumelo F1]
gi|346650661|gb|AEO43285.1| Guanosine polyphosphate pyrophosphohydrolase [Xanthomonas
axonopodis pv. citrumelo F1]
Length = 728
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 258 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 221 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 280
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 281 VED---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 331
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 332 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 360
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR L + RA+AQ T I
Sbjct: 120 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLARMRVADRLSEDERRALAQLTRDI 179
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 180 HAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 212
>gi|398813763|ref|ZP_10572455.1| (p)ppGpp synthetase, RelA/SpoT family [Brevibacillus sp. BC25]
gi|398038063|gb|EJL31236.1| (p)ppGpp synthetase, RelA/SpoT family [Brevibacillus sp. BC25]
Length = 723
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 84/131 (64%), Gaps = 9/131 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E +S R K +YSIF KM R++ +++YD ALR++V D I+ CY++L
Sbjct: 229 NIEAEISGRPKHIYSIFKKMTRQNKQFNEIYDLLALRIIVND---------IRDCYAVLG 279
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT MH+ AE G+AAH
Sbjct: 280 IVHTLWKPMPGRFKDYIAMPKTNMYQSLHTTVIGPKGEPLEVQIRTWDMHQTAEIGIAAH 339
Query: 397 WLYKETGNKLQ 407
W YKE + +Q
Sbjct: 340 WAYKEGKSIVQ 350
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 85/152 (55%), Gaps = 24/152 (15%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINV 66
T+ AG LHDVV+D +L + E+FG +VA LV GV++L I QL HR+
Sbjct: 66 TIAAGFLHDVVEDTEITLDHLREQFGPDVALLVDGVTKLEKIKYKSKEEQLAENHRK--- 122
Query: 67 NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 126
ML+ M D RV++IKLADRLHNMRT+ + K R ++ ETL I+
Sbjct: 123 ---------------MLVAMAQDIRVIMIKLADRLHNMRTLRHMSEEKQREISDETLEIF 167
Query: 127 CSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA RLG+ ++K ELED L PQ + ++
Sbjct: 168 APLAHRLGIASVKWELEDTALRYLNPQQYYRI 199
>gi|344340006|ref|ZP_08770933.1| (p)ppGpp synthetase I, SpoT/RelA [Thiocapsa marina 5811]
gi|343800185|gb|EGV18132.1| (p)ppGpp synthetase I, SpoT/RelA [Thiocapsa marina 5811]
Length = 737
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 88/126 (69%), Gaps = 9/126 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E ++ R K +YSI+ KM+RK+V I +++D RA+R++VG ++ CY+ L
Sbjct: 249 GIEAEITGRPKHIYSIWRKMQRKEVEIAEIFDLRAVRILVG---------SVADCYAALG 299
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW I EFDDYI PK + Y+SLHTAV GP+ LEVQIRT +MH++AE G+AAH
Sbjct: 300 LVHGLWKHIPKEFDDYIATPKGNMYRSLHTAVVGPEDKPLEVQIRTHEMHQHAEFGVAAH 359
Query: 397 WLYKET 402
W YKE+
Sbjct: 360 WAYKES 365
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 91/152 (59%), Gaps = 6/152 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T++A +L+ +D + +E+ FG +A++V +SR+ I + + ++
Sbjct: 79 ETLIAALLNGCLDQGDLTEAQLEDRFGPGIARMVGDLSRIGQIANIDAIIAAKDQDE--- 135
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
HEE +LR +LLG+ +D RVVL+ LA+R+H MR I L P + +A++T I+ LA+
Sbjct: 136 -HEE--NLRRLLLGIAEDVRVVLVVLAERVHLMRAIKDLEPERRAKIARDTQRIYAPLAN 192
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+W +K ELEDL L P+ ++++ LA
Sbjct: 193 RLGIWQVKWELEDLSLRYLNPEEYKRIAKLLA 224
>gi|325927559|ref|ZP_08188794.1| (p)ppGpp synthetase, RelA/SpoT family [Xanthomonas perforans
91-118]
gi|325542064|gb|EGD13571.1| (p)ppGpp synthetase, RelA/SpoT family [Xanthomonas perforans
91-118]
Length = 728
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 258 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 221 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 280
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 281 VED---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 331
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 332 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 360
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR L + RA+AQ T I
Sbjct: 120 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLARMRVADRLSEDERRALAQLTRDI 179
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 180 HAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 212
>gi|350552242|ref|ZP_08921447.1| (p)ppGpp synthetase I, SpoT/RelA [Thiorhodospira sibirica ATCC
700588]
gi|349794895|gb|EGZ48703.1| (p)ppGpp synthetase I, SpoT/RelA [Thiorhodospira sibirica ATCC
700588]
Length = 726
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 98/164 (59%), Gaps = 15/164 (9%)
Query: 279 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 338
+ + R K +YSI+ KM++K + +VYD RA+RV+V I CY+ L +V
Sbjct: 243 QAEVRGRPKHIYSIWRKMQKKQLDFEEVYDLRAVRVIV---------ERISSCYTALGVV 293
Query: 339 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 398
H LW I EFDDYI NPK +GYQSLHTAV GP +EVQIRT+ M E+AE G+AAHW
Sbjct: 294 HSLWPHIPREFDDYIANPKDNGYQSLHTAVIGPQAKVVEVQIRTRDMDEFAELGVAAHWR 353
Query: 399 YKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD---TDLFQ 439
YKE G + ++++ S L DD+ LD ++LFQ
Sbjct: 354 YKEGGTEDKALTRAIAS---LRRLLDNKEDDNELLDSFRSELFQ 394
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 88/171 (51%), Gaps = 13/171 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T++A +L D I+ FG+ VA LV V L + R +
Sbjct: 72 ETLIATLLIDAHLQETLDSNEIKSNFGERVAGLVNNVHWLITFKGIPR--------ETAS 123
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
EEA LR MLL MVDD R VLIKLA RL +R + A P + A A+ETL I+ LA+
Sbjct: 124 QPEEAERLRRMLLAMVDDVRAVLIKLAYRLQRLRNLAAHPDSTTLAYARETLDIFSPLAN 183
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
RLG+ LK E+EDL F +L+P+ +R++ L NR G R I +
Sbjct: 184 RLGIGQLKWEMEDLAFRILEPEEYRRLACLLEE-----NRTGRERYIADFM 229
>gi|307610160|emb|CBW99708.1| GTP pyrophosphokinase [Legionella pneumophila 130b]
Length = 734
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 82/117 (70%), Gaps = 9/117 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K ++SI+ KM+RK+V + ++YDA A+R+++ + CY +L +VH LW
Sbjct: 257 RSKHIHSIYKKMKRKNVSLDEIYDATAVRILLDTEAQ---------CYEVLGMVHTLWKQ 307
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
I EFDDYI+NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE
Sbjct: 308 IPAEFDDYIINPKSNGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKE 364
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 88/153 (57%), Gaps = 6/153 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A I+ + V A S+ +EE+ G +AKLV G+ ++S +N +N+
Sbjct: 78 ETLAAAIIFENVHYADLSIDDVEEQLGHNIAKLVKGIEKMSAMNNFQA------LNKYPQ 131
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD RVVLIKLA+ L +RT L + +A E + I+ LA+
Sbjct: 132 NKNQIDNIRKMLLAMVDDVRVVLIKLAECLCILRTAGHLSETVRKQLATEAMEIYAPLAN 191
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 164
RLG+ A+K E+EDL F L P+ ++ + L +
Sbjct: 192 RLGIGAIKWEMEDLAFRHLHPEEYKAIAKGLKA 224
>gi|153209488|ref|ZP_01947403.1| RelA/SpoT family protein [Coxiella burnetii 'MSU Goat Q177']
gi|212218778|ref|YP_002305565.1| GTP pyrophosphokinase [Coxiella burnetii CbuK_Q154]
gi|120575341|gb|EAX31965.1| RelA/SpoT family protein [Coxiella burnetii 'MSU Goat Q177']
gi|212013040|gb|ACJ20420.1| GTP pyrophosphokinase [Coxiella burnetii CbuK_Q154]
Length = 714
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 10/128 (7%)
Query: 281 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 340
+S R K +YSIF K++RK V ++YD A+R++V +++ CY+ L IVH
Sbjct: 238 NISGRAKHIYSIFRKIQRKQVDFSEIYDTSAVRILVS---------SLEDCYTALSIVHA 288
Query: 341 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 400
LW PI EFDDYI PK +GY+S+HTAV GP+G +E+QIRT MHE AE G+AAHW YK
Sbjct: 289 LWEPIAKEFDDYIAKPKDNGYRSIHTAVIGPEGHNVEIQIRTYGMHEEAELGVAAHWKYK 348
Query: 401 ETGNKLQS 408
E G K+ S
Sbjct: 349 E-GKKVAS 355
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 82/144 (56%), Gaps = 5/144 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +L+ V + S ++ ++ G VAKL+ G R+ I+ +L R + Q +
Sbjct: 62 ETLAAALLYPTVTQSGISQEALTDQIGKSVAKLLMGTKRMETIDDMLIRSSGFSQQQNFV 121
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++LR MLL MVDD R+VLIKL++RL +R P ++ + +AQ+ + ++ LA+
Sbjct: 122 -----DNLRKMLLAMVDDVRIVLIKLSERLTTLRYSRHQPISEQKDIAQKIMDLYAPLAN 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIF 155
RLG+ K ++ED F L P +
Sbjct: 177 RLGVGQFKWQMEDWAFRYLNPNEY 200
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 601 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 660
K+ LR ++ W++++ + RQ + + + V PNG+++ L +G+T
Sbjct: 360 KINWLREVMDWQKEVSPDVKWRQ--------------IFEDHIYVFTPNGDVIDLEAGAT 405
Query: 661 AADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
D A + +G + VNG++V LK GD VE+
Sbjct: 406 PLDFAYRIHTEIGHRCRGTRVNGKMVPLTRTLKTGDCVEI 445
>gi|165923932|ref|ZP_02219764.1| RelA/SpoT family protein [Coxiella burnetii Q321]
gi|165916624|gb|EDR35228.1| RelA/SpoT family protein [Coxiella burnetii Q321]
Length = 714
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 10/128 (7%)
Query: 281 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 340
+S R K +YSIF K++RK V ++YD A+R++V +++ CY+ L IVH
Sbjct: 238 NISGRAKHIYSIFRKIQRKQVDFSEIYDTSAVRILVS---------SLEDCYTALSIVHA 288
Query: 341 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 400
LW PI EFDDYI PK +GY+S+HTAV GP+G +E+QIRT MHE AE G+AAHW YK
Sbjct: 289 LWEPIAKEFDDYIAKPKDNGYRSIHTAVIGPEGHNVEIQIRTYGMHEEAELGVAAHWKYK 348
Query: 401 ETGNKLQS 408
E G K+ S
Sbjct: 349 E-GKKVAS 355
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 82/144 (56%), Gaps = 5/144 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +L+ V + S ++ ++ G VAKL+ G R+ I+ +L R + Q +
Sbjct: 62 ETLAAALLYPTVTQSGISQEALTDQIGKSVAKLLMGTKRMETIDDMLIRSSGFSQQQNFV 121
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++LR MLL MVDD R+VLIKL++RL +R P ++ + +AQ+ + ++ LA+
Sbjct: 122 -----DNLRKMLLAMVDDVRIVLIKLSERLTTLRYSRHQPISEQKDIAQKIMDLYAPLAN 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIF 155
RLG+ K ++ED F L P +
Sbjct: 177 RLGVGQFKWQMEDWAFRYLNPNEY 200
Score = 39.7 bits (91), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 601 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 660
K+ LR ++ W++++ + RQ + + + V PNG+++ L +G+T
Sbjct: 360 KINWLREVMDWQKEVSPDVKWRQ--------------IFEDHIYVFTPNGDVIDLEAGAT 405
Query: 661 AADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
D A + +G + VNG++V LK GD VE+
Sbjct: 406 PLDFAYRIHTEIGHRCRGTRVNGKMVPLTRTLKTGDCVEI 445
>gi|257784325|ref|YP_003179542.1| (p)ppGpp synthetase I SpoT/RelA [Atopobium parvulum DSM 20469]
gi|257472832|gb|ACV50951.1| (p)ppGpp synthetase I, SpoT/RelA [Atopobium parvulum DSM 20469]
Length = 781
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 103/180 (57%), Gaps = 20/180 (11%)
Query: 239 EAQKKAKVVQDAGIAL-TSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMR 297
E Q+ A++V D+ L ++ L EL + + I ++T R K L+SI+ KM
Sbjct: 209 EYQRVARMVSDSRAQRENDLNNAKKTLTDEL--NAAGITDFQIT--GRPKHLWSIYQKMV 264
Query: 298 RKDVGIHKVYDARALRVV---VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIV 354
RK +YD ALRV+ VGD CYS L +H LW P+ G F DYI
Sbjct: 265 RKGREFSNIYDLIALRVITKNVGD------------CYSALGAIHALWHPMPGRFKDYIA 312
Query: 355 NPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 414
PK + YQSLHT V GPDG +E+QIRT +MHE +E+G+AAHWLYKE GN +SS D+
Sbjct: 313 TPKANLYQSLHTTVIGPDGRPIEIQIRTAEMHEASEYGIAAHWLYKEEGNSKGKMSSEDK 372
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 93/147 (63%), Gaps = 12/147 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DT+ A ++HD V+D SL I FG VA+LV GV++L+ ++ ++
Sbjct: 79 DTICAALMHDTVEDTSASLDEISSRFGKSVAELVDGVTKLT------------SIEVSSM 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++A +LR M L M D RVV+IKLADRLHNMRT+ ALPP + A+ET+ ++ LA
Sbjct: 127 DEKQALNLRKMFLAMSKDIRVVIIKLADRLHNMRTLAALPPDRRLFKARETMDVYAPLAD 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ ++K ELEDL F L+P+ ++++
Sbjct: 187 RLGISSVKWELEDLSFFWLEPEEYQRV 213
>gi|406915367|gb|EKD54454.1| hypothetical protein ACD_60C00079G0007 [uncultured bacterium]
Length = 680
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 9/126 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ R K +YSI+ K +K++ +YD A+R++V P +Q CY L
Sbjct: 245 GIKADIAGRAKHIYSIYLKSLKKNLNYRDIYDCSAVRILV---------PTVQDCYLALS 295
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH+++ + EFDDYI +PK +GY+S+HTAV G DG LEVQIRT +MHE+AEHG+AAH
Sbjct: 296 IVHQIFEHLTEEFDDYISHPKQNGYRSIHTAVIGSDGKYLEVQIRTPEMHEFAEHGVAAH 355
Query: 397 WLYKET 402
W+YKET
Sbjct: 356 WVYKET 361
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
V A I+ + S+ +I+E G+ AKL A V +++ +++L + R N Q L
Sbjct: 80 VAASIITSTLQHTSISIETIKETLGERTAKLAASVMQMNALDKLSNKTR--NKMQVDL-- 135
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
LR + L MV D RVVLIKLA+R+ MR I + P + + +A+ET+ I+ LA+RL
Sbjct: 136 -----LRKLFLAMVSDIRVVLIKLAERICIMRGIKHVNPRERKRIAEETMDIYAPLANRL 190
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITT 180
G+ LK ELED F L P ++ + LA R+ RI T
Sbjct: 191 GIGQLKWELEDHAFHYLDPDTYKTIADFLAE-----RRIDREERIQT 232
>gi|411116988|ref|ZP_11389475.1| (p)ppGpp synthetase, RelA/SpoT family [Oscillatoriales
cyanobacterium JSC-12]
gi|410713091|gb|EKQ70592.1| (p)ppGpp synthetase, RelA/SpoT family [Oscillatoriales
cyanobacterium JSC-12]
Length = 751
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K LY I+ KM+R+ G ++YD A+R++V D N + CY L IVH +
Sbjct: 255 ISGRPKHLYGIYQKMQRQQKGYEEIYDVAAVRIIV-DSN--------EECYRSLAIVHDM 305
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 306 FRPIPGRFKDYIGLPKPNRYQSLHTVVIGNTGRPLEVQIRTLEMHHVAEYGIAAHWKYKE 365
Query: 402 TGNKLQSISSMDE 414
TGN ++ MDE
Sbjct: 366 TGNSSTPLTGMDE 378
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 95/171 (55%), Gaps = 17/171 (9%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D + +E FG EV LV GV++LS N + R
Sbjct: 87 IAAGFLHDVVEDTDVTADELETLFGKEVRTLVEGVTKLSKFNFSSKTER----------- 135
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M D RV+++KLADRLHNMRT+ LP AK R +A ET I+ LA+RL
Sbjct: 136 -QAENFRRMFLAMAQDIRVIVVKLADRLHNMRTLEHLPDAKRRQIALETREIFAPLANRL 194
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 184
G+ K ELEDL F L+P +R ++ +A R R++ IVS+
Sbjct: 195 GIGRFKWELEDLAFKYLEPDAYRNVQELVAE-----KRTDREARLSNIVSA 240
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 598 INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRS 657
++ K LR +L W+ L+ +S D + GEV + PNG+++ L
Sbjct: 376 MDEKFTWLRQLLDWQSDLKDAQEYLESI--------KDDLFDGEVYVFT-PNGDVVSLSR 426
Query: 658 GSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
G+T D A + VG VNG++ +T LK+GDIVE+
Sbjct: 427 GATPVDFAYRIHTEVGNHCAGARVNGRMATLDTALKNGDIVEI 469
>gi|212212252|ref|YP_002303188.1| GTP pyrophosphokinase [Coxiella burnetii CbuG_Q212]
gi|212010662|gb|ACJ18043.1| GTP pyrophosphokinase [Coxiella burnetii CbuG_Q212]
Length = 714
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 10/128 (7%)
Query: 281 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 340
+S R K +YSIF K++RK V ++YD A+R++V +++ CY+ L IVH
Sbjct: 238 NISGRAKHIYSIFRKIQRKQVDFSEIYDTSAVRILVS---------SLEDCYTALSIVHA 288
Query: 341 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 400
LW PI EFDDYI PK +GY+S+HTAV GP+G +E+QIRT MHE AE G+AAHW YK
Sbjct: 289 LWEPIAKEFDDYIAKPKDNGYRSIHTAVIGPEGHNVEIQIRTYGMHEEAELGVAAHWKYK 348
Query: 401 ETGNKLQS 408
E G K+ S
Sbjct: 349 E-GKKVAS 355
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 82/144 (56%), Gaps = 5/144 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +L+ V + S ++ ++ G VAKL+ G R+ I+ +L R + Q +
Sbjct: 62 ETLAAALLYPTVTQSGISQEALTDQIGKSVAKLLMGTKRMETIDGMLIRSSGFSQQQNFV 121
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++LR MLL MVDD R+VLIKL++RL +R P ++ + +AQ+ + ++ LA+
Sbjct: 122 -----DNLRKMLLAMVDDVRIVLIKLSERLTTLRYSRHQPISEQKDIAQKIMDLYAPLAN 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIF 155
RLG+ K ++ED F L P +
Sbjct: 177 RLGVGQFKWQMEDWAFRYLNPNEY 200
>gi|154706244|ref|YP_001424809.1| GTP pyrophosphokinase [Coxiella burnetii Dugway 5J108-111]
gi|154355530|gb|ABS76992.1| GTP pyrophosphokinase [Coxiella burnetii Dugway 5J108-111]
Length = 714
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 10/128 (7%)
Query: 281 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 340
+S R K +YSIF K++RK V ++YD A+R++V +++ CY+ L IVH
Sbjct: 238 NISGRAKHIYSIFRKIQRKQVDFSEIYDTSAVRILVS---------SLEDCYTALSIVHA 288
Query: 341 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 400
LW PI EFDDYI PK +GY+S+HTAV GP+G +E+QIRT MHE AE G+AAHW YK
Sbjct: 289 LWEPIAKEFDDYIAKPKDNGYRSIHTAVIGPEGHNVEIQIRTYGMHEEAELGVAAHWKYK 348
Query: 401 ETGNKLQS 408
E G K+ S
Sbjct: 349 E-GKKVAS 355
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 82/144 (56%), Gaps = 5/144 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +L+ V + S ++ ++ G VAKL+ G R+ I+ +L R + Q +
Sbjct: 62 ETLAAALLYPTVTQSGISQEALTDQIGKSVAKLLMGTKRMETIDDMLIRSSGFSQQQNFV 121
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++LR MLL MVDD R+VLIKL++RL +R P ++ + +AQ+ + ++ LA+
Sbjct: 122 -----DNLRKMLLAMVDDVRIVLIKLSERLTTLRYSRHQPISEQKDIAQKIMDLYAPLAN 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIF 155
RLG+ K ++ED F L P +
Sbjct: 177 RLGVGQFKWQMEDWAFRYLNPNEY 200
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 601 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 660
K+ LR ++ W++++ + RQ + + + V PNG+++ L +G+T
Sbjct: 360 KINWLREVMDWQKEVSPDVKWRQ--------------IFEDHIYVFTPNGDVIDLEAGAT 405
Query: 661 AADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
D A + +G + VNG++V LK GD VE+
Sbjct: 406 PLDFAYRIHTEIGHRCRGARVNGKMVPLTRTLKTGDCVEI 445
>gi|381150377|ref|ZP_09862246.1| (p)ppGpp synthetase, RelA/SpoT family [Methylomicrobium album BG8]
gi|380882349|gb|EIC28226.1| (p)ppGpp synthetase, RelA/SpoT family [Methylomicrobium album BG8]
Length = 704
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 114/202 (56%), Gaps = 20/202 (9%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K +YSI+ KM+RK + I +YD A+RV+V + + CY++L
Sbjct: 227 GITAEVYGRPKHIYSIWKKMQRKQLDIEDLYDLLAVRVIVTN---------LTQCYTVLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW I EFDDYI NPK +GYQSLHT + +G+ +EVQIRT++MHE+AE G+AAH
Sbjct: 278 LVHSLWQTIPKEFDDYIANPKENGYQSLHTVIVDNEGNRIEVQIRTREMHEFAEMGVAAH 337
Query: 397 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPL----DTDLFQK--YSSLKMGHPV 450
W YKE G ++ E +I + L ++ D+ L T+LF Y G +
Sbjct: 338 WSYKEGGRHNAAV----EKNIASLRKLLEEKDNDETLAEDFKTELFSDRVYVLTPAGKLI 393
Query: 451 IRVEGSNLL-AAVIIRVEKGGR 471
V+GS L A I E G R
Sbjct: 394 DLVKGSTPLDFAYAIHTEIGHR 415
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T +A IL D + I FG+ V LV V+ L+ +++V +
Sbjct: 60 TTLAAILSDPRLSTLDPQPDIAGLFGETVDSLVKDVNWLN----------KLSVYTPEMT 109
Query: 73 HE--EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
H+ + LR MLL M D R VLIKLA R+ +R++ P +A+ETL I+ LA
Sbjct: 110 HQPNQTETLRRMLLSMTHDVRAVLIKLAYRIKRLRSLAGEPEEVRHFIARETLDIYAPLA 169
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
+R+G+ K ELED+ F L+P +++ + LA + R R
Sbjct: 170 NRMGIHQFKWELEDMAFRYLEPLVYKSIAKSLADKRTERER 210
>gi|384107667|ref|ZP_10008565.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase [Treponema
sp. JC4]
gi|383870523|gb|EID86125.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase [Treponema
sp. JC4]
Length = 470
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 88/146 (60%), Gaps = 23/146 (15%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ VT++SR K YSI+ KMR+++ ++YD ALR++ CY L+
Sbjct: 240 GISVTITSRAKHFYSIYQKMRKRNKSASELYDLLALRILCNSNAE---------CYQLVG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW+P+DG F DYI PK +GYQSLHT V +G LE+QIRT +MH AEHG+A+H
Sbjct: 291 IVHSLWLPMDGRFKDYIAVPKANGYQSLHTTVIC-EGKPLEIQIRTYEMHNMAEHGIASH 349
Query: 397 WLYK-------------ETGNKLQSI 409
WLYK E NKLQS+
Sbjct: 350 WLYKKGTNHDLVEADKLEIFNKLQSL 375
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 13/159 (8%)
Query: 5 SSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI 64
+ K D V+ GILH + D S I + FG+++ KL+ G +++ Y+
Sbjct: 70 ADSKLDADAVITGILHTIRDFGV-SPEEIGKTFGEQIEKLLQGTNKIMYLP--------- 119
Query: 65 NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLL 124
+N TL +A+ +R M+ MVDD R++L+K+ADRL +R I +L P + R +A+E +
Sbjct: 120 -INSKTL--RQADAIRKMIFAMVDDVRIILVKIADRLDRIRNIKSLEPERQRILAEEIID 176
Query: 125 IWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
IW LA RLG+ K E EDL P+ + ++ A +A
Sbjct: 177 IWAPLADRLGMQTAKNEFEDLSLRYTNPKAYNQIEAIVA 215
>gi|238022794|ref|ZP_04603220.1| hypothetical protein GCWU000324_02706 [Kingella oralis ATCC 51147]
gi|237865997|gb|EEP67133.1| hypothetical protein GCWU000324_02706 [Kingella oralis ATCC 51147]
Length = 730
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ R K +YSI+ KM +K + +YD RA+R++V I CY+ L
Sbjct: 246 GIQYDVAGRPKHIYSIYKKMVKKKLDFEGLYDIRAVRILVN---------TIPECYATLG 296
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H L+ PI GEFDDYI NPK +GY+SLHT + GP+ ++EVQIRT +MH++ E G+AAH
Sbjct: 297 IIHSLFQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKSIEVQIRTFEMHQFNEFGVAAH 356
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 357 WRYKEGGK 364
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 6/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+ V A +L ++ ++ E+ G V LV G+ + + + ++
Sbjct: 72 EAVAATVLAEISSYLPNWQETVSEQCGKTVVTLVQGIDEVQKLTHFAKVDALATPDERA- 130
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP--PAKARAVAQETLLIWCSL 129
+A +R MLL MV D RVVLIKLA R M+ + P P K RAVA+ETL I+ L
Sbjct: 131 --AQAEAMRKMLLAMVSDIRVVLIKLALRTRTMQFLGQTPDSPEK-RAVAKETLDIFAPL 187
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+RLG+W LK +LEDL F P+ ++++
Sbjct: 188 ANRLGVWQLKWQLEDLGFRHQNPEEYKRI 216
>gi|254424339|ref|ZP_05038057.1| RelA/SpoT family protein [Synechococcus sp. PCC 7335]
gi|196191828|gb|EDX86792.1| RelA/SpoT family protein [Synechococcus sp. PCC 7335]
Length = 771
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+SSR K LYSI+ KM+R+ ++YD A+R++V K+ CY L + H L
Sbjct: 273 VSSRPKHLYSIYKKMQRQQKEFQEIYDIAAIRLLVNTKDE---------CYRALAVAHDL 323
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ PI G F DYI PKP+ YQSLHT V GP G +EVQIRT +MH AE+G+AAHW YKE
Sbjct: 324 YRPIPGRFKDYIGLPKPNRYQSLHTVVMGPHGRPIEVQIRTVEMHHIAEYGIAAHWKYKE 383
Query: 402 TGNKLQSISSMDE 414
+GN +I+ DE
Sbjct: 384 SGNSHTTITQDDE 396
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 87/145 (60%), Gaps = 12/145 (8%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D + I FG EV LV GV++LS + + T
Sbjct: 105 IAAGFLHDVVEDTEVTADEIGAIFGAEVRHLVEGVTKLS----------KFEFDSKT--E 152
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
++A + R M L M D RV+++KLADRLHNMRT+ L P K +A+ETL I+ LA+RL
Sbjct: 153 QQAENFRRMFLAMAKDIRVIVVKLADRLHNMRTLQHLRPDKQVRIARETLEIFAPLANRL 212
Query: 134 GLWALKAELEDLCFAVLQPQIFRKM 158
G+ K ELEDLCF L+P+ ++++
Sbjct: 213 GIGRFKWELEDLCFKYLEPEAYKEL 237
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 599 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 658
+ K LR +L W+ +L+ Q L N D E V PNG+++ L G
Sbjct: 395 DEKFTWLRQLLDWQNELKDA----QEYLSDVKNNLFD-----EEVYAFTPNGDVVPLSRG 445
Query: 659 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
+T D A + VG V+G++V NTEL++GDIVE+
Sbjct: 446 ATPVDFAYRIHTEVGNHCAGAKVSGRIVPLNTELQNGDIVEI 487
>gi|150390117|ref|YP_001320166.1| (p)ppGpp synthetase I SpoT/RelA [Alkaliphilus metalliredigens QYMF]
gi|149949979|gb|ABR48507.1| (p)ppGpp synthetase I, SpoT/RelA [Alkaliphilus metalliredigens
QYMF]
Length = 727
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 88/140 (62%), Gaps = 13/140 (9%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K YSI+ KM ++ +++D A RV+V + ++ CY +L
Sbjct: 226 GIENEISGRPKHFYSIYRKMVYQNKSFDEIFDFIAFRVIVNN---------VKDCYGILG 276
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI G F DYI PKP+ YQSLHT V GP+G E+QIRT++MH+ AE G+AAH
Sbjct: 277 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPNGEPFEIQIRTKEMHQIAEFGIAAH 336
Query: 397 WLYKETGNKLQSISSMDESD 416
W YKE +SI++ D+ D
Sbjct: 337 WSYKEG----KSINNEDDMD 352
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 99/170 (58%), Gaps = 14/170 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ AG+LHDV++D G + EEFG+EVA+LV GV++L+ ++ + R
Sbjct: 63 TIAAGLLHDVIEDTPYGYGKVREEFGEEVAELVEGVTKLTRLSFESKEER---------- 112
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A +LR M + M D RVVLIKLADRLHNMRT+ K + A ETL I+ +A R
Sbjct: 113 --QAENLRKMFIAMAKDIRVVLIKLADRLHNMRTLKYQSDEKKKEKAMETLEIFAPIAHR 170
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
LG+ +K ELEDLC + P+ + + +A R+R + ++ +I+
Sbjct: 171 LGISRIKWELEDLCLLYIDPEGYYDLVDKVAK--KRRDRETFINKVISIL 218
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 595 EASINNKVRLLRTMLRWEEQLRSEASLRQS-KLGGKANGNPDSVVPGEVVIVCWPNGEIM 653
E ++ K+ LR ML WE+ + S K+ N V V P GE++
Sbjct: 348 EDDMDTKLTWLRQMLEWEKDTKDPKEFMASLKVDLYTNE----------VFVFTPKGEVI 397
Query: 654 RLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
L SGST D A K VG + V+ ++V + +LK+G+IVE+
Sbjct: 398 NLPSGSTPIDFAYKIHSDVGNKCVGAKVDSRMVPIDYKLKNGNIVEI 444
>gi|354565208|ref|ZP_08984383.1| (p)ppGpp synthetase I, SpoT/RelA [Fischerella sp. JSC-11]
gi|353549167|gb|EHC18609.1| (p)ppGpp synthetase I, SpoT/RelA [Fischerella sp. JSC-11]
Length = 758
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K LYSI+ KM+R++ H++YD ALR++V + CY L +VH +
Sbjct: 256 ISGRPKHLYSIYQKMQRQNKEFHEIYDLAALRIIVQTN---------EECYRALAVVHDV 306
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ PI G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 307 FRPIPGRFKDYIGLPKPNRYQSLHTGVIGPWGRPLEVQIRTMEMHHVAEYGIAAHWKYKE 366
Query: 402 TGNKLQSISSMDE 414
TG +++ DE
Sbjct: 367 TGGSHTGLTASDE 379
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 89/146 (60%), Gaps = 12/146 (8%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D ++ IE+ FG EV LV GV++LS +IN T
Sbjct: 88 IAAGFLHDVVEDTDVTIEEIEQRFGSEVRCLVEGVTKLS----------KINFKSKT--E 135
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M D RV+++KLADRLHNMRT+ +P K R A ET I+ LA+RL
Sbjct: 136 SQAENFRRMFLAMAQDIRVIVVKLADRLHNMRTLEYMPEEKRRRTATETREIFAPLANRL 195
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMR 159
G+W K ELEDL F L+P+ FR+++
Sbjct: 196 GIWRFKWELEDLAFKYLEPEAFRQIQ 221
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 592 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 651
T + AS + K LR +L W+ L+ +S D++ E + V P G+
Sbjct: 372 TGLTAS-DEKFTWLRQLLEWQSDLKDAQEYLESI--------KDNLFE-EDIYVFTPKGD 421
Query: 652 IMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
++ L+ GST D A + VG V VNG++V +T L++GDIVE+
Sbjct: 422 LVALKPGSTTVDFAYRIHTEVGNRCTGVRVNGRMVPLSTRLQNGDIVEI 470
>gi|334127724|ref|ZP_08501627.1| GTP diphosphokinase [Centipeda periodontii DSM 2778]
gi|333388860|gb|EGK60030.1| GTP diphosphokinase [Centipeda periodontii DSM 2778]
Length = 743
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 98/160 (61%), Gaps = 18/160 (11%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
+ G+E + R K YSI+ KM+R + ++++YD A+RV+V +++ CY +
Sbjct: 233 VAGIEAEIKGRAKHFYSIYRKMKRDNKSVNEIYDLSAVRVLVS---------SVKDCYGV 283
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L ++H +W PI G F DYI PK +GYQSLHT V G LE+QIRT+ MH+ +E G+A
Sbjct: 284 LGVIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-THGDPLEIQIRTKAMHQVSEFGIA 342
Query: 395 AHWLYKETGNKLQSISSMDESDIEAS-----SSLSKDTDD 429
AHW YKE G +SI + DE+D + S SL ++ DD
Sbjct: 343 AHWKYKEAG---RSIGATDENDQKMSWLRQMVSLQQEYDD 379
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 87/144 (60%), Gaps = 12/144 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +LHDVV+D C +L +E +FG + +L+ GV++L I + + ++
Sbjct: 71 ETICAALLHDVVEDTCATLEEMEAQFGKNIMELIDGVTKLGRIEYMSKEDVKLE------ 124
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ R M L M D RV++IKLADRLHNMRT+ + K +A+ETL ++ LA+
Sbjct: 125 ------NYRKMFLAMAKDIRVIMIKLADRLHNMRTLKYMREDKRHRIAKETLEVYAPLAN 178
Query: 132 RLGLWALKAELEDLCFAVLQPQIF 155
RLG+ +K ELEDLC L+P+ +
Sbjct: 179 RLGISNIKVELEDLCLRYLEPEAY 202
>gi|428221859|ref|YP_007106029.1| RelA/SpoT family (p)ppGpp synthetase [Synechococcus sp. PCC 7502]
gi|427995199|gb|AFY73894.1| (p)ppGpp synthetase, RelA/SpoT family [Synechococcus sp. PCC 7502]
Length = 752
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 96/175 (54%), Gaps = 21/175 (12%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
I G EVT R K LY I+ KM R+ ++YD A+RV+V + + CY +
Sbjct: 254 ITGFEVT--GRPKHLYGIYEKMHRQQKPYGEIYDIAAVRVIVNNTDE---------CYRI 302
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L I H + P+ G F DYI PKP+GYQSLHTAV PDG LEVQIRT +MH AE+G+A
Sbjct: 303 LAIAHDCFRPVPGRFKDYIALPKPNGYQSLHTAVISPDGQPLEVQIRTWEMHHVAEYGIA 362
Query: 395 AHWLYKETGNKLQSISSMDESD----------IEASSSLSKDTDDHNPLDTDLFQ 439
AHW YKE+ + S ++ +D +E+ + D + L DLF
Sbjct: 363 AHWKYKESNSNPNSNGGLNNNDSEKFNWLRQMVESQKDIKDDQEYIESLKQDLFN 417
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D +L IE +FG EV +LV GV++LS +IN N T
Sbjct: 91 IAAGFLHDVVEDTSVTLAEIEAQFGAEVRQLVEGVTKLS----------KINFNSKT--E 138
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M +D RV+++KLADRLHNMRT+ L P K +A+ET I+ LA+RL
Sbjct: 139 RQAENFRRMFLYMAEDIRVIVVKLADRLHNMRTLEHLAPHKQVLIARETRDIFAPLANRL 198
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G+ K ELEDL F L+ + +R+M+A +A S R
Sbjct: 199 GIGQFKWELEDLAFKYLEAEQYREMKALVAETRSDR 234
>gi|57233675|ref|YP_180760.1| GTP pyrophosphokinase [Dehalococcoides ethenogenes 195]
gi|57224123|gb|AAW39180.1| GTP pyrophosphokinase [Dehalococcoides ethenogenes 195]
Length = 728
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/132 (50%), Positives = 82/132 (62%), Gaps = 12/132 (9%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRR---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 333
G++V LS R K LYSI+ KM + + +YD ALRV+V D I CY
Sbjct: 238 GLKVELSGRPKHLYSIYQKMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYH 288
Query: 334 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 393
+ IVH LW PI G FDDYI NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+
Sbjct: 289 AIGIVHSLWHPIPGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGV 348
Query: 394 AAHWLYKETGNK 405
AAHW YK G +
Sbjct: 349 AAHWRYKTAGKE 360
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 107/174 (61%), Gaps = 7/174 (4%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI--NQLLRRHRRINVNQGT 70
T+ A +LHDV +DA SL IE++FG +VAKLV GV++LS + + RR G
Sbjct: 64 TLAAALLHDVPEDAHISLEQIEKKFGADVAKLVDGVTKLSKLALGPGIEDARRPG---GN 120
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A +LR ML+ M +D RVV IKLADR HNMRT+ AL K R++A+ET+ I+ LA
Sbjct: 121 ASLRQAENLRKMLVAMSEDLRVVFIKLADRFHNMRTLQALSAEKRRSIAKETMEIYAPLA 180
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 184
RLG+W LK +LEDL F L P+ +R++ + S + R Y ++ I+ S
Sbjct: 181 HRLGIWELKWQLEDLAFRYLDPRHYRQVANLVDSKLAQRK--NYIEHVSAILQS 232
>gi|270307456|ref|YP_003329514.1| relA/spoT protein, GTP pyrophosphokinase [Dehalococcoides sp. VS]
gi|270153348|gb|ACZ61186.1| relA/spoT protein, GTP pyrophosphokinase [Dehalococcoides sp. VS]
Length = 728
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/132 (50%), Positives = 82/132 (62%), Gaps = 12/132 (9%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRR---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 333
G++V LS R K LYSI+ KM + + +YD ALRV+V D I CY
Sbjct: 238 GLKVELSGRPKHLYSIYQKMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYH 288
Query: 334 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 393
+ IVH LW PI G FDDYI NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+
Sbjct: 289 AIGIVHSLWHPIPGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGV 348
Query: 394 AAHWLYKETGNK 405
AAHW YK G +
Sbjct: 349 AAHWRYKTAGKE 360
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 108/176 (61%), Gaps = 7/176 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI--NQLLRRHRRINVNQ 68
V T+ A +LHDV +DA SL I+++FG +VAKLV GV++LS + + RR
Sbjct: 62 VSTLSAALLHDVPEDANISLEQIDKKFGPDVAKLVDGVTKLSKLALGPAIEDARRPG--- 118
Query: 69 GTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 128
G +A +LR ML+ M +D RVV IKLADR HNMRT+ AL K R++A+ET+ I+
Sbjct: 119 GNASLRQAENLRKMLVAMSEDLRVVFIKLADRFHNMRTLQALSAEKRRSIAKETMEIYAP 178
Query: 129 LASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 184
LA RLG+W LK +LEDL F L P+ +R++ + S + R Y ++ I+ S
Sbjct: 179 LAHRLGIWELKWQLEDLAFRYLDPRHYRQVANLVDSKLAQRK--NYIEHVSAILQS 232
>gi|225593179|gb|ACN96096.1| (p)ppGpp synthetase I [Fischerella sp. MV11]
Length = 758
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K LYSI+ KM+R++ H++YD ALR++V + CY L +VH +
Sbjct: 255 ISGRPKHLYSIYQKMQRQNKEFHEIYDLAALRIIVQTN---------EECYRALAVVHDV 305
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ PI G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 306 FRPIPGRFKDYIGLPKPNRYQSLHTGVIGPWGRPLEVQIRTMEMHHVAEYGIAAHWKYKE 365
Query: 402 TGNKLQSISSMDE 414
TG +++ DE
Sbjct: 366 TGGSHTGLTASDE 378
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 89/146 (60%), Gaps = 12/146 (8%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D ++ IE+ FG EV LV GV++LS +IN T
Sbjct: 87 IAAGFLHDVVEDTDVTIEEIEQRFGSEVRCLVEGVTKLS----------KINFKSKT--E 134
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M D RV+++KLADRLHNMRT+ +P K R A ET I+ LA+RL
Sbjct: 135 SQAENFRRMFLAMAQDIRVIVVKLADRLHNMRTLEYMPDEKRRRTATETREIFAPLANRL 194
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMR 159
G+W K ELEDL F L+P+ FR+++
Sbjct: 195 GIWRFKWELEDLAFKYLEPEAFRQIQ 220
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 592 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 651
T + AS + K LR +L W+ L+ +S D++ E + V P G+
Sbjct: 371 TGLTAS-DEKFTWLRQLLEWQSDLKDAQEYLESI--------KDNLFE-EDIYVFTPKGD 420
Query: 652 IMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
++ L+ GST D A + VG V VNG++V +T L++GDIVE+
Sbjct: 421 LVALKPGSTTVDFAYRIHTEVGNRCTGVRVNGRMVPLSTRLQNGDIVEI 469
>gi|427392523|ref|ZP_18886528.1| RelA/SpoT family protein [Alloiococcus otitis ATCC 51267]
gi|425731484|gb|EKU94302.1| RelA/SpoT family protein [Alloiococcus otitis ATCC 51267]
Length = 736
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 101/172 (58%), Gaps = 23/172 (13%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E ++ R K +YSI+ KM+ + ++YD A+RV+V P+I+ CY++L
Sbjct: 234 IEANITGRPKHIYSIYRKMKNQKKQFGEIYDLLAIRVIV---------PSIKDCYAVLGA 284
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
+H W P+ G F DYI PK + YQSLHT V GPD + LEVQIRTQ+MHE AE+G+AAHW
Sbjct: 285 IHTRWKPMPGRFKDYIAMPKANMYQSLHTTVLGPDATPLEVQIRTQQMHEVAEYGVAAHW 344
Query: 398 LYKETGNKLQSISSMDESD----------IEASSSLSKDTDDHNPLDTDLFQ 439
YKE K Q + ++SD IE + + +D + + D+FQ
Sbjct: 345 AYKE--GKTQKVK--EDSDNKQLSWFRDIIELQTESNNASDFMDSIKEDIFQ 392
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 84/159 (52%), Gaps = 12/159 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV G LHDV++D S I E F +VA LV GVS+L +
Sbjct: 70 TVATGFLHDVIEDTLYSYDDIAEMFNPKVADLVDGVSKLG------------KFKFKSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A + R MLL M D RVVL+KLADRLHNMRT+ P K R +A+ETL I+ LA R
Sbjct: 118 EHQAENHRKMLLAMAKDVRVVLVKLADRLHNMRTLKYHRPEKQREIARETLEIYAPLADR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
LG+ +K ELED + PQ + ++ + S R R
Sbjct: 178 LGISRIKWELEDTALRYINPQQYYRIVHLMKSRREDRER 216
>gi|423321551|ref|ZP_17299422.1| RelA/SpoT family protein [Lactobacillus crispatus FB077-07]
gi|405594489|gb|EKB67900.1| RelA/SpoT family protein [Lactobacillus crispatus FB077-07]
Length = 746
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 113/393 (28%), Positives = 175/393 (44%), Gaps = 118/393 (30%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV AG LHD V+D + ++E+FG++VA +V GV++ +N+ +
Sbjct: 69 DTVAAGFLHDTVEDTPVTNDELKEKFGEDVAFIVDGVTK---LNKYEYK----------- 114
Query: 72 GHEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
H+E A + R ML+ M AQ+ +I L
Sbjct: 115 SHQEFLAENHRKMLIAM--------------------------------AQDLRVIMVKL 142
Query: 130 ASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP-RNRVGYSRRITTIVSSPPL 187
A RL + L+ L+P R++ ++ +++P +R+G I TI
Sbjct: 143 ADRLHNMHTLQH---------LRPDKQRRIASETMDIYAPLADRLG----IGTI------ 183
Query: 188 DERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVV 247
+ +D SF H L+ + V D+ R +R K++ D K+
Sbjct: 184 --KWELEDMSF-----HYLNPEAYYRIVNLMDV--KRSQREKYIADTIKT---------- 224
Query: 248 QDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVY 307
L T G++ + R K +YSI+ KM K ++Y
Sbjct: 225 ---------------------LKKTLNELGIKYEIYGRPKHIYSIYKKMVNKHKDFDEIY 263
Query: 308 DARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTA 367
D A+RV+V + ++ CY++L VH W P+ G F DYI PK +GYQSLHT
Sbjct: 264 DLLAVRVIVKN---------VRDCYAVLGAVHTEWKPMPGRFKDYIAMPKVNGYQSLHTT 314
Query: 368 VQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 400
+ GP G LE+QIRT++MH+ AE+G+AAHW YK
Sbjct: 315 IIGPGGRPLEIQIRTEQMHKVAEYGVAAHWAYK 347
>gi|220904804|ref|YP_002480116.1| (p)ppGpp synthetase I SpoT/RelA [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869103|gb|ACL49438.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 719
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 89/140 (63%), Gaps = 13/140 (9%)
Query: 264 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 323
L K+LL S G+E + R+K YSI+ KM+ + + + +++D A RV+V D
Sbjct: 219 LIKDLLASN----GIEGQVYGRIKHKYSIYKKMQSQSLTLDEMHDIMAFRVLVKD----- 269
Query: 324 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 383
I+ CY+ L +VH W P+ G F DYI PK +GYQSLHT V GP+G +E+QIRT+
Sbjct: 270 ----IRDCYAALGLVHSQWRPVHGRFKDYISMPKTNGYQSLHTTVIGPEGERIEIQIRTE 325
Query: 384 KMHEYAEHGLAAHWLYKETG 403
MH AEHG+AAHWLYKE G
Sbjct: 326 DMHRQAEHGVAAHWLYKEKG 345
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 92/146 (63%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TVVAG+LHD V+D +L ++E FG++VA +V GV+++S I +
Sbjct: 65 TVVAGLLHDTVEDTKATLEELDENFGEDVADIVDGVTKISMIPFENKEE----------- 113
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A ++R M+L M D RV+++KLADRLHNMRT+ K + +AQET+ I+ LA+R
Sbjct: 114 -AQAENIRKMILAMSHDMRVLMVKLADRLHNMRTLDFQKAHKQKGIAQETMDIYAPLANR 172
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LGL+ +K LEDL F L+P IF ++
Sbjct: 173 LGLYIMKRNLEDLSFKYLRPDIFNQI 198
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P G++ L G+T D A KVG +NG+L+ +TELK+GDIVE+
Sbjct: 387 VYVYTPAGDVKELPEGATPLDFAFIIHTKVGQHCTGAKINGRLMPLSTELKNGDIVEI 444
>gi|345891626|ref|ZP_08842465.1| hypothetical protein HMPREF1022_01125 [Desulfovibrio sp.
6_1_46AFAA]
gi|345048010|gb|EGW51857.1| hypothetical protein HMPREF1022_01125 [Desulfovibrio sp.
6_1_46AFAA]
Length = 719
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 89/135 (65%), Gaps = 12/135 (8%)
Query: 269 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 328
L+++++I G + R+K YSI+ KM+ + + + +++D A RV+V D I
Sbjct: 223 LLASNHIQG---QVYGRIKHKYSIYKKMQSQSLTLDEMHDIMAFRVLVKD---------I 270
Query: 329 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 388
+ CY++L +VH W P+ G F DYI PK +GYQSLHT V GP+G +E+QIRT+ MH
Sbjct: 271 KDCYAVLGLVHSQWRPVHGRFKDYISMPKANGYQSLHTTVIGPEGERIEIQIRTEDMHRQ 330
Query: 389 AEHGLAAHWLYKETG 403
AEHG+AAHWLYKE G
Sbjct: 331 AEHGVAAHWLYKEKG 345
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 89/146 (60%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV AG+LHD V+D ++ I+E FG+EVA +V GV+++S I +
Sbjct: 65 TVAAGLLHDTVEDTKATIEEIDENFGEEVADIVDGVTKISMIPFENKEE----------- 113
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A ++R M+L M D RV+++KLADR HNM T+ K + +AQET+ I+ LA+R
Sbjct: 114 -AQAENIRKMILAMSHDMRVLMVKLADRQHNMSTLDFQKAHKQKRIAQETMDIYAPLANR 172
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LGL+ LK LEDL F L+P +F ++
Sbjct: 173 LGLYMLKRNLEDLSFKYLRPDVFNQI 198
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P G++ L G+T D A KVG VNG+L+ +TELK+GDIVE+
Sbjct: 387 VYVYTPAGDVKELPEGATPLDFAFLIHTKVGQHCAGAKVNGRLMPLSTELKNGDIVEI 444
>gi|312135681|ref|YP_004003019.1| (p)ppgpp synthetase i, spot/rela [Caldicellulosiruptor owensensis
OL]
gi|311775732|gb|ADQ05219.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor owensensis
OL]
Length = 726
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 102/173 (58%), Gaps = 14/173 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ ++VAG+LHDVV+D SL IE EFG E+A+LV GV++L + + R
Sbjct: 68 IASIVAGLLHDVVEDTSASLEDIEREFGKEIAELVDGVTKLGKLEFTSKLER-------- 119
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A + R ML+ M D RV+LIKLADRLHNMRT+ LPP K R AQET+ I+ LA
Sbjct: 120 ----QAENYRKMLIAMAKDIRVILIKLADRLHNMRTLKYLPPEKQRQKAQETIEIYAPLA 175
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 183
RLG+ +K ELEDL L P+ + + +A R Y +RI +++S
Sbjct: 176 HRLGISKIKWELEDLSLRYLDPEGYYDLVEKIAKKRVEREE--YIKRIISLIS 226
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 76/120 (63%), Gaps = 9/120 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+ R K YSI+ KM+ + + ++YD A+R++V +++ CY +L I+H L
Sbjct: 239 IDGRPKHFYSIYRKMKEQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTL 289
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 290 FKPMPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 349
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 599 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 658
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 358 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 408
Query: 659 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 409 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 450
>gi|303327509|ref|ZP_07357950.1| GTP diphosphokinase [Desulfovibrio sp. 3_1_syn3]
gi|302862449|gb|EFL85382.1| GTP diphosphokinase [Desulfovibrio sp. 3_1_syn3]
Length = 719
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 89/135 (65%), Gaps = 12/135 (8%)
Query: 269 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 328
L+++++I G + R+K YSI+ KM+ + + + +++D A RV+V D I
Sbjct: 223 LLASNHIQG---QVYGRIKHKYSIYKKMQSQSLTLDEMHDIMAFRVLVKD---------I 270
Query: 329 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 388
+ CY++L +VH W P+ G F DYI PK +GYQSLHT V GP+G +E+QIRT+ MH
Sbjct: 271 KDCYAVLGLVHSQWRPVHGRFKDYISMPKANGYQSLHTTVIGPEGERIEIQIRTEDMHRQ 330
Query: 389 AEHGLAAHWLYKETG 403
AEHG+AAHWLYKE G
Sbjct: 331 AEHGVAAHWLYKEKG 345
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 89/146 (60%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV AG+LHD V+D ++ I+E FG+EVA +V GV+++S I +
Sbjct: 65 TVAAGLLHDTVEDTKATIEEIDENFGEEVADIVDGVTKISMIPFENKEE----------- 113
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A ++R M+L M D RV+++KLADR HNM T+ K + +AQET+ I+ LA+R
Sbjct: 114 -AQAENIRKMILAMSHDMRVLMVKLADRQHNMSTLDFQKAHKQKRIAQETMDIYAPLANR 172
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LGL+ LK LEDL F L+P +F ++
Sbjct: 173 LGLYMLKRNLEDLSFKYLRPDVFNQI 198
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P G++ L G+T D A KVG VNG+L+ +TELK+GDIVE+
Sbjct: 387 VYVYTPAGDVKELPEGATPLDFAFLIHTKVGQHCAGAKVNGRLMPLSTELKNGDIVEI 444
>gi|350570797|ref|ZP_08939143.1| GTP diphosphokinase [Neisseria wadsworthii 9715]
gi|349794745|gb|EGZ48555.1| GTP diphosphokinase [Neisseria wadsworthii 9715]
Length = 736
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 81/122 (66%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K +G +YD RA+R++V + CY+ L IVH L
Sbjct: 257 VAGRPKHIYSIYKKMVKKKLGFEGLYDIRAVRILVD---------TVPECYTTLGIVHSL 307
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI PK +GY+SLHT + GP+ +EVQIRT +MH++ E G+AAHW YKE
Sbjct: 308 WQPIPGEFDDYIAYPKANGYKSLHTVIVGPEDKGVEVQIRTFEMHQFNEFGVAAHWRYKE 367
Query: 402 TG 403
G
Sbjct: 368 GG 369
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLG-SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
D V A IL D+ CE+ + E G ++ LV G+ I +L + N+
Sbjct: 78 DAVAATILTDI-SSFCENWQEKVTETCGKQICDLVKGIDE---IQKLTHFAKVDNLATPE 133
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSL 129
E+A +R MLL MV D RVVLIKLA R M+ + LP + K RA+A+ETL I+ L
Sbjct: 134 ERAEQAETMRKMLLAMVSDIRVVLIKLALRTRTMQYLCRLPDSEKKRAIAKETLDIFAPL 193
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+RLG+W LK +LEDL F P+ ++++
Sbjct: 194 ANRLGVWQLKWQLEDLGFRHQDPEKYKEI 222
>gi|339499056|ref|YP_004697091.1| (p)ppGpp synthetase I SpoT/RelA [Spirochaeta caldaria DSM 7334]
gi|338833405|gb|AEJ18583.1| (p)ppGpp synthetase I, SpoT/RelA [Spirochaeta caldaria DSM 7334]
Length = 678
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 90/136 (66%), Gaps = 9/136 (6%)
Query: 266 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 325
+E +++ + G+EV +++R K YSI+ KMR+++ G +++D +R++
Sbjct: 217 QEAILTETQKLGIEVVVNARAKHFYSIYQKMRKRNKGPEELFDLFGIRILCN-------- 268
Query: 326 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 385
+ CY+L+ VH LW PI+G F DYI PK +GYQSLHT V DG LE+QIRT++M
Sbjct: 269 -TVDDCYTLVGTVHHLWKPIEGRFKDYIAMPKSNGYQSLHTTVMSFDGKLLEIQIRTKEM 327
Query: 386 HEYAEHGLAAHWLYKE 401
H+ AE+G+A+HWLYK+
Sbjct: 328 HQIAEYGVASHWLYKK 343
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 101/167 (60%), Gaps = 14/167 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DT+ A +LHDV++D + +IE++F +V KLV GV++++ I+ TL
Sbjct: 64 DTISAALLHDVLEDTATTGEAIEQKFNKDVRKLVEGVTKIA----------DIHAKNKTL 113
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+EA ++R ML MV D RV+LIKLAD+LHNMRT+ LPP + +A AQ+ L I+ LA
Sbjct: 114 --QEAENIRKMLFAMVQDIRVILIKLADKLHNMRTLDYLPPERRKANAQDCLDIYAPLAD 171
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRI 178
RLG+ +K ELEDL L ++ +++ +A ++R + R+
Sbjct: 172 RLGISWIKDELEDLSLKHLNRDVYDQIKGIVA--LKKKDRESFLNRV 216
>gi|91775651|ref|YP_545407.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Methylobacillus flagellatus KT]
gi|91709638|gb|ABE49566.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Methylobacillus flagellatus KT]
Length = 740
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI +KMRRK + +++YD RA+R++V D ++ CY++L
Sbjct: 258 GIQADMMGRPKHIYSIVNKMRRKQLSFNELYDVRAVRILVDD---------VKDCYAVLG 308
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H LW PI EFDDYI PK + Y+SLHT V GP LE+QIRT +MH ++E G+AAH
Sbjct: 309 LIHNLWQPIPKEFDDYIARPKSNNYRSLHTVVIGPRNLPLEIQIRTHEMHYHSELGVAAH 368
Query: 397 WLYKETG 403
W YKE G
Sbjct: 369 WRYKEGG 375
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 18/179 (10%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR--------RHRR 63
+T+ A +LH + +++ F ++ LV G +R+ I R R +
Sbjct: 79 ETIAATVLHACPEYLPGWKEKLQQAFSPQIVALVEGFARMEQIQSFSRPDIGRTKDRKKD 138
Query: 64 INVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETL 123
Q + +R MLL MV+D RVVLIKLADR+ +R++ P + +A+E
Sbjct: 139 SEAQQA-----QVESMRKMLLAMVEDIRVVLIKLADRVETLRSLAGAPEDEQLRIAEEAK 193
Query: 124 LIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
I+ LA+RLG+W +K ELEDL L+P++++++ LA RVG + I ++
Sbjct: 194 TIYAPLANRLGVWHIKWELEDLSLRFLEPKLYKEIAKLLAE-----KRVGREQYIKEVL 247
>gi|374622074|ref|ZP_09694602.1| GTP diphosphokinase [Ectothiorhodospira sp. PHS-1]
gi|373941203|gb|EHQ51748.1| GTP diphosphokinase [Ectothiorhodospira sp. PHS-1]
Length = 723
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 101/166 (60%), Gaps = 17/166 (10%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K +YSI+ KM RK + +YD RA+RV+V DK T CY++L +
Sbjct: 238 VEGEVRGRPKHIYSIWKKMDRKQLEFQDLYDLRAVRVIV-DKVAT--------CYAVLGV 288
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH W I EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT+ M +AE G+AAHW
Sbjct: 289 VHSRWPHIPKEFDDYIANPKDNGYQSLHTAVIGPNGKVVEVQIRTRDMDAFAELGVAAHW 348
Query: 398 LYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSS 443
YKE G + Q++ + A +SL + +H D +L + + S
Sbjct: 349 RYKEGGREDQAL-------MRAIASLRR-LLEHQEDDRELLEDFRS 386
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 79/145 (54%), Gaps = 8/145 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DT++A +L D D S + FG+ VA+LV V L+ R Q
Sbjct: 69 DTLIAALLLDAHFDGSLSDEDLSRHFGEPVARLVKNVHLLTTF--------RSAPGQLDG 120
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E+A LR MLL MVDD R VLIKLA RL ++R + P A ARA A+ET I+ LA+
Sbjct: 121 APEQAERLRRMLLAMVDDVRAVLIKLAYRLQHLRLMSQEPDALARAYARETQEIFTPLAN 180
Query: 132 RLGLWALKAELEDLCFAVLQPQIFR 156
RLG+ +K E+EDL F + P +R
Sbjct: 181 RLGVAQVKWEMEDLAFRIQDPDHYR 205
>gi|288942359|ref|YP_003444599.1| (p)ppGpp synthetase I SpoT/RelA [Allochromatium vinosum DSM 180]
gi|288897731|gb|ADC63567.1| (p)ppGpp synthetase I, SpoT/RelA [Allochromatium vinosum DSM 180]
Length = 743
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 85/126 (67%), Gaps = 9/126 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ ++ R K +YSI+ KM+RK+V I ++D RA+R++V ++ CY+ L
Sbjct: 251 GIGAEITGRPKHIYSIWKKMQRKNVDIADIFDLRAVRILVD---------SVADCYAALG 301
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW I EFDDYI PK + YQSLHTAV+GP+ ALEVQIRT MH++AE G+AAH
Sbjct: 302 VVHGLWRHIPKEFDDYIATPKGNFYQSLHTAVEGPEAKALEVQIRTHAMHQHAEFGVAAH 361
Query: 397 WLYKET 402
W YKE
Sbjct: 362 WAYKEA 367
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 91/155 (58%), Gaps = 8/155 (5%)
Query: 12 DTVVAGILHDVVDDACESL--GSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQG 69
+T+VA +L +D + L ++ E FG +A++V ++R+ + + + +
Sbjct: 79 ETLVAALLKGCLDWSGGELTEAALLEGFGPGIARMVDDLARIDQLANV----EAVITAKD 134
Query: 70 TLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
HEE +LR +LLG+ +D RVVL+ LA+R+H MR I L P + +A++T ++ L
Sbjct: 135 QPQHEE--NLRRLLLGIAEDVRVVLVVLAERVHLMRAIKDLEPERRTKIARDTQRVYAPL 192
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 164
A+RLG+W +K ELEDL LQP+ +R++ LA
Sbjct: 193 ANRLGIWQIKWELEDLSLRYLQPEEYRRIAKLLAE 227
>gi|217967359|ref|YP_002352865.1| (p)ppGpp synthetase I SpoT/RelA [Dictyoglomus turgidum DSM 6724]
gi|217336458|gb|ACK42251.1| (p)ppGpp synthetase I, SpoT/RelA [Dictyoglomus turgidum DSM 6724]
Length = 727
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 95/167 (56%), Gaps = 12/167 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ ++ R K LYSI+ KM R+ + I ++YD +RV+V + + CY +L
Sbjct: 229 GINAEVTGRAKHLYSIYQKMLRRGIEIEEMYDLLGVRVIVNSE---------KECYEVLG 279
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H LW P+ G F DYI N K + YQSLHT V DG LEVQIRT +MH AE+G+AAH
Sbjct: 280 IIHNLWKPVPGRFKDYIANKKSNNYQSLHTTVIAMDGKPLEVQIRTWEMHRIAEYGIAAH 339
Query: 397 WLYKETGNKLQSIS---SMDESDIEASSSLSKDTDDHNPLDTDLFQK 440
WLYKE K S S +E L+ D + + +DLF++
Sbjct: 340 WLYKEEIKKPDSFEEKLSWLRQLLEWQKELTDDQEFLESIKSDLFER 386
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 89/159 (55%), Gaps = 12/159 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
V+AG+LHDV++D + IE+EFG +V LV +++L ++ R
Sbjct: 66 VVIAGLLHDVLEDTNVTKEEIEKEFGKDVLSLVEAITKLEKLSFYPTEAYR--------- 116
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
A +LR M + M D RV++IKLADRLHNM+T+ K + +A+ETL I+ LA R
Sbjct: 117 ---AQNLRKMFIAMAKDIRVIIIKLADRLHNMQTLQYHEEEKQKRIAKETLEIYAPLAHR 173
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
LG+W +K LEDL F L+P+ + + +A R +
Sbjct: 174 LGVWDIKWRLEDLAFRYLEPEKYHYVAKKVAETRKEREK 212
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 597 SINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLR 656
S K+ LR +L W+++L + +S S + + V P G+++ L
Sbjct: 351 SFEEKLSWLRQLLEWQKELTDDQEFLES---------IKSDLFEREIYVFTPKGDVIALP 401
Query: 657 SGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
GST D A +VG + VNG++V N L++GDIVE+
Sbjct: 402 QGSTPIDFAYAIHTEVGHRCRGAKVNGRIVPLNYILQNGDIVEI 445
>gi|406904851|gb|EKD46504.1| hypothetical protein ACD_67C00212G0005, partial [uncultured
bacterium]
Length = 382
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 83/126 (65%), Gaps = 9/126 (7%)
Query: 280 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 339
+ + R KS+YS+F KM++ D+ I+++YD A+R++V P + CY L IVH
Sbjct: 120 IKIDGRAKSVYSLFLKMQKHDMDINQIYDLAAVRIIV---------PEVADCYETLGIVH 170
Query: 340 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 399
+ + P+ G DYI PKP+GYQS+HT V GPDG LEVQIRT KMH AE G+AAHW+Y
Sbjct: 171 KKYRPMIGRIKDYISLPKPNGYQSIHTTVFGPDGKILEVQIRTIKMHNEAEFGIAAHWIY 230
Query: 400 KETGNK 405
E+ K
Sbjct: 231 SESKKK 236
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 52/73 (71%)
Query: 78 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 137
+LR M+L M D RV++IKLADRLHNM+T+ PP K +A+ETL I+ +A+RLG+
Sbjct: 6 NLRKMILAMASDIRVIIIKLADRLHNMQTLEFNPPDKQIRIARETLEIFAPIANRLGMGE 65
Query: 138 LKAELEDLCFAVL 150
+K +L+DL F L
Sbjct: 66 VKTQLQDLSFKYL 78
>gi|350564067|ref|ZP_08932886.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalimicrobium aerophilum
AL3]
gi|349778067|gb|EGZ32426.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalimicrobium aerophilum
AL3]
Length = 726
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 93/158 (58%), Gaps = 12/158 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ ++ R K +YSI+ KM RK + +YD RALR+ V D + CY L
Sbjct: 227 GIHARVTGRPKHIYSIWKKMSRKTQRLDDLYDLRALRIYVKD---------VAECYRCLS 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH W I EFDDYI +PK +GYQS+HT V GP+G +E+QIRT +MH++AE+G+AAH
Sbjct: 278 LVHEQWNFIRDEFDDYITSPKDNGYQSIHTVVMGPEGKTVEIQIRTHEMHQHAEYGIAAH 337
Query: 397 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 434
W YKE G + + E+ I + L + DD D
Sbjct: 338 WKYKEGG---KGYDARLEASINSMRQLLEHRDDAEVFD 372
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 24/210 (11%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+ + F + KL+ G+ RL+ + N + + E LR MLL M D R+
Sbjct: 80 LAKRFDPQCVKLIEGIRRLNQFKEF-----DPNTHSDAVQTER---LRQMLLAMTSDIRM 131
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
+++KL R+ +R + P + +A ET LI+ LA+RLG+ LK ELEDL F L+P
Sbjct: 132 MVVKLGYRVARLRNLKHEPEPVRKQIAAETQLIFAPLANRLGIAQLKWELEDLSFRFLEP 191
Query: 153 QIFRKMRADLASMWSPR-----NRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLS 207
+++K+ ++LA R N + Y IT ++++ + R T +H+ S
Sbjct: 192 DLYKKIASELADKRVERENYIENLISY---ITQLLANAGIHARV-------TGRPKHIYS 241
Query: 208 M-KDLLEAVVPFDILSDRRKRTKFLHDLAK 236
+ K + D L D R ++ D+A+
Sbjct: 242 IWKKMSRKTQRLDDLYDLRALRIYVKDVAE 271
>gi|334136491|ref|ZP_08509954.1| GTP diphosphokinase [Paenibacillus sp. HGF7]
gi|333605960|gb|EGL17311.1| GTP diphosphokinase [Paenibacillus sp. HGF7]
Length = 728
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 90/153 (58%), Gaps = 9/153 (5%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI KM ++ +++YD ALRV+V + I+ CY+ L
Sbjct: 227 GIEGDISGRPKHIYSIHKKMSSRNKQFNEIYDLMALRVIVDN---------IKDCYAALG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H LW P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPLEVQIRTWEMHKTAEYGIAAH 337
Query: 397 WLYKETGNKLQSISSMDESDIEASSSLSKDTDD 429
W YKE + S L K+TD+
Sbjct: 338 WAYKEGNGSPEGTFSDKMQWFREILELQKETDN 370
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 87/148 (58%), Gaps = 12/148 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V +++A +LHDVV+D SL +++++FG A LV G+++L RI T
Sbjct: 62 VTSIIAALLHDVVEDTTVSLEAVQDKFGRTCAMLVDGLTKLE----------RIKFK--T 109
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
++ + R M + M D RV+LIKLADRLHNMRT+ R +A ETL I+C +A
Sbjct: 110 KEEQQNENYRKMFVAMAQDIRVILIKLADRLHNMRTLKYQSEESQRRIADETLEIFCPIA 169
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ A+K E+ED+ L PQ + ++
Sbjct: 170 HRLGISAIKWEMEDIALRYLNPQQYYRI 197
>gi|399050755|ref|ZP_10740799.1| (p)ppGpp synthetase, RelA/SpoT family [Brevibacillus sp. CF112]
gi|433545167|ref|ZP_20501527.1| GTP pyrophosphokinase [Brevibacillus agri BAB-2500]
gi|398051471|gb|EJL43793.1| (p)ppGpp synthetase, RelA/SpoT family [Brevibacillus sp. CF112]
gi|432183556|gb|ELK41097.1| GTP pyrophosphokinase [Brevibacillus agri BAB-2500]
Length = 723
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 84/131 (64%), Gaps = 9/131 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E +S R K +YSIF KM +++ +++YD ALR++V D I+ CY++L
Sbjct: 229 NIEAEISGRPKHIYSIFKKMTKQNKQFNEIYDLLALRIIVND---------IRDCYAVLG 279
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT MH+ AE G+AAH
Sbjct: 280 IVHTLWKPMPGRFKDYIAMPKTNMYQSLHTTVIGPKGEPLEVQIRTWDMHQTAEIGIAAH 339
Query: 397 WLYKETGNKLQ 407
W YKE + +Q
Sbjct: 340 WAYKEGKSVVQ 350
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 85/152 (55%), Gaps = 24/152 (15%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINV 66
T+ AG LHDVV+D +L + E+FG +VA LV GV++L I QL HR+
Sbjct: 66 TIAAGFLHDVVEDTDVTLDDLREQFGPDVALLVDGVTKLEKIKYKSKEEQLAENHRK--- 122
Query: 67 NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 126
ML+ M D RV++IKLADRLHNMRT+ + K R ++ ETL I+
Sbjct: 123 ---------------MLVAMAQDIRVIMIKLADRLHNMRTLRHMSEEKQREISDETLEIF 167
Query: 127 CSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA RLG+ ++K ELED L PQ + ++
Sbjct: 168 APLAHRLGIASVKWELEDTALRYLNPQQYYRI 199
>gi|407791016|ref|ZP_11138105.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Gallaecimonas
xiamenensis 3-C-1]
gi|407201659|gb|EKE71656.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Gallaecimonas
xiamenensis 3-C-1]
Length = 725
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM RK + +++D RA+R++V P +Q CY+ L
Sbjct: 230 GVDAQVYGRPKHIYSIWKKMSRKHLAFDELFDVRAVRIIV---------PRLQDCYAALG 280
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH + I EFDDY+ NPKP+GY+S+HT V GP G +E+QIRTQ MH+ AE G+AAH
Sbjct: 281 VVHTQFHHIPKEFDDYVANPKPNGYRSIHTVVVGPKGKTVEIQIRTQAMHDEAELGVAAH 340
Query: 397 WLYKETG 403
W YKE G
Sbjct: 341 WAYKEGG 347
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 9/147 (6%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DT++A +L + + +++G +A L+ V + I L +Q
Sbjct: 63 DTLLAALLVQPYRAKQLTRDQVVDQYGTTLAALLDSVIDMDAIRTL---------HQSAA 113
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ + +R M+L MV+D R V+I+LA+ + +R + VA+ ++ LA+
Sbjct: 114 SAGQVDKVRRMVLSMVNDVRAVVIRLAESIVELRAVKDADEETRVLVAKAAANLYAPLAN 173
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ LK ELEDL F L P ++++
Sbjct: 174 RLGIGQLKWELEDLSFRYLHPDTYKRI 200
>gi|357057600|ref|ZP_09118458.1| hypothetical protein HMPREF9334_00175 [Selenomonas infelix ATCC
43532]
gi|355374848|gb|EHG22139.1| hypothetical protein HMPREF9334_00175 [Selenomonas infelix ATCC
43532]
Length = 743
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 96/158 (60%), Gaps = 18/158 (11%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K YSI+ KM+R + + ++YD A+RV+V +++ CY +L
Sbjct: 235 GIEAEIKGRAKHFYSIYRKMKRDNKSVSEIYDLSAVRVLVS---------SVKDCYGVLG 285
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H +W PI G F DYI PK +GYQSLHT V G LE+QIRT+ MH+ +E G+AAH
Sbjct: 286 VIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-THGDPLEIQIRTKAMHQVSEFGVAAH 344
Query: 397 WLYKETGNKLQSISSMDESDIEAS-----SSLSKDTDD 429
W YKE G +SI + DE+D + S SL K+ DD
Sbjct: 345 WKYKEAG---RSIGATDENDQKMSWLRQMVSLQKEYDD 379
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 89/144 (61%), Gaps = 12/144 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +LHDVV+D C +L ++ EFG + +L+ GV++L I + + ++
Sbjct: 71 ETICAALLHDVVEDTCATLEEMDAEFGRNIMELIDGVTKLGRIEYMSKEDVKLE------ 124
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ R M L M D RV++IKLADRLHNMRT+ + K + +A+ET+ ++ LA+
Sbjct: 125 ------NYRKMFLAMAKDIRVIMIKLADRLHNMRTLKYMREDKRQRIAKETIEVYAPLAN 178
Query: 132 RLGLWALKAELEDLCFAVLQPQIF 155
RLG+ ++K ELEDLC L+P+ +
Sbjct: 179 RLGISSIKVELEDLCLRYLEPEAY 202
>gi|359685240|ref|ZP_09255241.1| GTP pyrophosphokinase [Leptospira santarosai str. 2000030832]
Length = 674
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW PI G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPIPGRFKDYIATPKTNLYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 MYKE 349
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HNMRT+ P K R +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRVILIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F VL P+ +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQVLNPEEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|71728397|gb|EAO30564.1| RelA/SpoT protein [Xylella fastidiosa Ann-1]
Length = 718
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +VYD +A+RV+V D + CY+ L
Sbjct: 234 GVCAEVSGRPKHIYSIWRKMQKKRLHFEQVYDLQAVRVMVEDMDA---------CYAALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ GEFDDYI PK + Y+SLHTAV GP+ +EVQIRT +MH +AE G+AAH
Sbjct: 285 VVHALWAPVPGEFDDYIARPKANDYRSLHTAVLGPEERTVEVQIRTHEMHAHAELGVAAH 344
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 345 WKYKEDGK 352
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 65 NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLL 124
++ G LR +LL +V D RVV I LA +L MR L ++ RA+AQ T
Sbjct: 111 TLHAGCAAGRNGEGLRRLLLALVHDLRVVPILLARQLAKMRAAGVLLESQRRALAQLTRD 170
Query: 125 IWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
I LA+RLG+W LK ELEDL F L+ +I+R + + L +RV R I+ I
Sbjct: 171 IHAPLANRLGIWQLKWELEDLAFCYLESEIYRSIASALDE-----SRVARERYISVI 222
>gi|410449683|ref|ZP_11303736.1| putative GTP diphosphokinase [Leptospira sp. Fiocruz LV3954]
gi|418743759|ref|ZP_13300118.1| putative GTP diphosphokinase [Leptospira santarosai str. CBC379]
gi|418751581|ref|ZP_13307865.1| putative GTP diphosphokinase [Leptospira santarosai str. MOR084]
gi|409968054|gb|EKO35867.1| putative GTP diphosphokinase [Leptospira santarosai str. MOR084]
gi|410016440|gb|EKO78519.1| putative GTP diphosphokinase [Leptospira sp. Fiocruz LV3954]
gi|410795154|gb|EKR93051.1| putative GTP diphosphokinase [Leptospira santarosai str. CBC379]
gi|456874475|gb|EMF89768.1| putative GTP diphosphokinase [Leptospira santarosai str. ST188]
Length = 674
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW PI G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPIPGRFKDYIATPKTNLYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 MYKE 349
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HNMRT+ P K R +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRVILIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F VL P+ +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQVLNPEEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|71274878|ref|ZP_00651166.1| RelA/SpoT protein [Xylella fastidiosa Dixon]
gi|71164610|gb|EAO14324.1| RelA/SpoT protein [Xylella fastidiosa Dixon]
Length = 718
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +VYD +A+RV+V D + CY+ L
Sbjct: 234 GVCAEVSGRPKHIYSIWRKMQKKRLHFEQVYDLQAVRVMVED---------MAACYAALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ GEFDDYI PK + Y+SLHTAV GP+ +EVQIRT +MH +AE G+AAH
Sbjct: 285 VVHALWAPVPGEFDDYIARPKANDYRSLHTAVLGPEERTVEVQIRTHEMHAHAELGVAAH 344
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 345 WKYKEDGK 352
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 65 NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLL 124
++ G LR +LL +V D RVV I LA +L MR L ++ RA+AQ T
Sbjct: 111 TLHAGCAAGRNGEGLRRLLLALVHDLRVVPILLARQLAKMRAAGVLLESQRRALAQLTRD 170
Query: 125 IWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
I LA+RLG+W LK ELEDL F L+ +I+R + + L +RV R I+ I
Sbjct: 171 IHAPLANRLGIWQLKWELEDLAFCYLESEIYRSIASALDE-----SRVARERYISVI 222
>gi|170729869|ref|YP_001775302.1| GTP diphosphokinase [Xylella fastidiosa M12]
gi|167964662|gb|ACA11672.1| GTP diphosphokinase [Xylella fastidiosa M12]
Length = 718
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +VYD +A+RV+V D + CY+ L
Sbjct: 234 GVCAEVSGRPKHIYSIWRKMQKKRLHFEQVYDLQAVRVMVED---------MAACYAALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ GEFDDYI PK + Y+SLHTAV GP+ +EVQIRT +MH +AE G+AAH
Sbjct: 285 VVHALWAPVPGEFDDYIARPKANDYRSLHTAVLGPEERTVEVQIRTHEMHAHAELGVAAH 344
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 345 WKYKEDGK 352
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 65 NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLL 124
++ G LR +LL +V D RVV I LA +L MR L ++ RA+AQ T
Sbjct: 111 TLHAGCAAGRNGEGLRRLLLALVHDLRVVPILLARQLAKMRAAGVLLESQRRALAQLTRD 170
Query: 125 IWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
I LA+RLG+W LK ELEDL F L+ +I+R + + L +RV R I+ I
Sbjct: 171 IHAPLANRLGIWQLKWELEDLAFCYLESEIYRSIASALDE-----SRVARERYISVI 222
>gi|307545602|ref|YP_003898081.1| GTP pyrophosphokinase [Halomonas elongata DSM 2581]
gi|307217626|emb|CBV42896.1| GTP pyrophosphokinase [Halomonas elongata DSM 2581]
Length = 761
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 88/144 (61%), Gaps = 9/144 (6%)
Query: 267 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 326
E L S G++ + R K +YSI+ KM+RK + +V+D RA+R++V P
Sbjct: 243 ETLKSLMDAQGIQHQVDGRAKHIYSIWRKMKRKRIDFSQVHDIRAVRILV---------P 293
Query: 327 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 386
+ CY++L IVH W + EFDDYI NPK +GYQSLHTAV GP+G LE+QIRT MH
Sbjct: 294 DVSDCYAVLGIVHSRWHHVPNEFDDYIANPKKNGYQSLHTAVFGPEGKVLEIQIRTFAMH 353
Query: 387 EYAEHGLAAHWLYKETGNKLQSIS 410
E AE G+ AHW YK +S S
Sbjct: 354 EEAELGVCAHWRYKGHDTSARSAS 377
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 6/156 (3%)
Query: 16 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 75
A +L+ V + L +E+ FG EVA L++GV +++ I+ QG H++
Sbjct: 87 AAVLYRAVRERLLGLDEVEKRFGAEVAGLISGVLQMAAISTTQ------MPTQGLSQHDQ 140
Query: 76 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 135
++LR ML+ M+DD RV LIK+A+R +R + P K VA+E I+ LA RLG+
Sbjct: 141 QDNLRKMLVNMIDDVRVALIKIAERTCALRQVRDAPREKRLQVAREVFDIYAPLAHRLGI 200
Query: 136 WALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
LK ELEDL F L ++ + LA R+R
Sbjct: 201 GHLKWELEDLSFRYLHEDDYKAIARQLAEKRLDRDR 236
>gi|421111743|ref|ZP_15572216.1| putative GTP diphosphokinase [Leptospira santarosai str. JET]
gi|410802939|gb|EKS09084.1| putative GTP diphosphokinase [Leptospira santarosai str. JET]
Length = 674
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW PI G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPIPGRFKDYIATPKTNLYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 MYKE 349
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HNMRT+ P K R +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRVILIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F VL P+ +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQVLNPEEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|269836765|ref|YP_003318993.1| (p)ppGpp synthetase I SpoT/RelA [Sphaerobacter thermophilus DSM
20745]
gi|269786028|gb|ACZ38171.1| (p)ppGpp synthetase I, SpoT/RelA [Sphaerobacter thermophilus DSM
20745]
Length = 748
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S+R K + SI KM RK ++YD +RV+V +K CY L
Sbjct: 262 GIRAEISAREKHITSIARKMERKGRSFDEIYDVLGVRVIVDEKKD---------CYGALG 312
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H +W PI GEFDDYI PK S YQS+HTAV GPDG LE+QIRT +MH AE+G+AAH
Sbjct: 313 VIHTMWHPIPGEFDDYIATPKESMYQSIHTAVLGPDGHPLEIQIRTAEMHHVAEYGIAAH 372
Query: 397 WLYKE 401
W YKE
Sbjct: 373 WRYKE 377
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 102/170 (60%), Gaps = 13/170 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +LHDV++D S+ + FG+ +A+LV GV++L I R + ++
Sbjct: 91 ETLCAALLHDVIEDTDTSVEELTTIFGERIARLVDGVTKLGRI--------RWATEEDSV 142
Query: 72 GHE---EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 128
E +A LR M L MVDD RVVLIKLADRLHNMRT+ +P AK AQET+ I+
Sbjct: 143 TREKERQAESLRKMFLAMVDDVRVVLIKLADRLHNMRTLEHMPRAKQLRSAQETMEIYAP 202
Query: 129 LASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRI 178
LA+RLG+W LK+ELEDL L PQ + ++ L + R R Y +R+
Sbjct: 203 LANRLGIWQLKSELEDLALRYLDPQTYFSIKRALDRRGTDRER--YLQRV 250
Score = 39.3 bits (90), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 27/160 (16%)
Query: 555 HLTEEEESEYWAVVSAVF--EGKPVDSVVSRRSSDSVAPTSMEA------------SINN 600
++ +ES Y ++ +AV +G P++ + VA + A ++
Sbjct: 328 YIATPKESMYQSIHTAVLGPDGHPLEIQIRTAEMHHVAEYGIAAHWRYKEGARPDPNVEA 387
Query: 601 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 660
K+ LR ++ W +++ +S S V E++ V P G+I+ L +G+T
Sbjct: 388 KIAWLRQLMDWRDEVVDAQEFVESL---------KSDVFQEMIYVFTPKGDIIELPAGAT 438
Query: 661 AADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
D A + VG + VN QLV N L++G +V++
Sbjct: 439 PVDFAYRIHTEVGHQCVGAKVNNQLVPLNYRLQNGQVVQI 478
>gi|71731045|gb|EAO33113.1| RelA/SpoT protein [Xylella fastidiosa Ann-1]
Length = 718
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +VYD +A+RV+V D + CY+ L
Sbjct: 234 GVCAEVSGRPKHIYSIWRKMQKKRLHFEQVYDLQAVRVMVED---------MAACYAALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ GEFDDYI PK + Y+SLHTAV GP+ +EVQIRT +MH +AE G+AAH
Sbjct: 285 VVHALWAPVPGEFDDYIARPKANDYRSLHTAVLGPEERTVEVQIRTHEMHAHAELGVAAH 344
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 345 WKYKEDGK 352
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 65 NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLL 124
++ G LR +LL +V D RVV I LA +L MR L ++ RA+AQ T
Sbjct: 111 TLHAGCAAGRNGEGLRRLLLALVHDLRVVPILLARQLAKMRAAGVLLESQRRALAQLTRD 170
Query: 125 IWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
I LA+RLG+W LK ELEDL F L+ +I+R + + L +RV R I+ I
Sbjct: 171 IHAPLANRLGIWQLKWELEDLAFCYLESEIYRSIASALDE-----SRVARERYISVI 222
>gi|119944303|ref|YP_941983.1| (p)ppGpp synthetase I and guanosine-3',5'-bis pyrophosphate
3'-pyrophosphohydrolase [Psychromonas ingrahamii 37]
gi|119862907|gb|ABM02384.1| (p)ppGpp synthetase I and guanosine-3',5'-bis pyrophosphate
3'-pyrophosphohydrolase [Psychromonas ingrahamii 37]
Length = 737
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 81/121 (66%), Gaps = 9/121 (7%)
Query: 281 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 340
T R K +YSI+ KM++K++ +YD RA+RVVV +Q CY+ L +H
Sbjct: 246 TAYGRPKHIYSIYRKMQKKNLQFEDLYDVRAVRVVV---------EKLQDCYAALGAIHT 296
Query: 341 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 400
W I EFDDYI NPK +GYQS+HT V GP+G A+EVQIRT+KMHE +E G+AAHW YK
Sbjct: 297 QWRHIPSEFDDYIANPKANGYQSIHTVVLGPEGKAVEVQIRTRKMHEDSELGVAAHWKYK 356
Query: 401 E 401
E
Sbjct: 357 E 357
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 84/154 (54%), Gaps = 10/154 (6%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+DT+ A ++ ++D S + E + VAKLV G + + I L NQG
Sbjct: 71 MDTLNAALIFPLLDHQIISQEQVNEWWSKRVAKLVKGATDMEGIRALQ--------NQGG 122
Query: 71 LGHEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 128
+ A ++LR MLL MVDD R V+IKLA+R+ +R I K VA E I+
Sbjct: 123 SNNNAAQVDNLRNMLLAMVDDVRAVVIKLAERICYLRQIKGADKDKRLLVASEISSIYAP 182
Query: 129 LASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
LA+RLG+ LK ELEDL F L+P+I++K+ L
Sbjct: 183 LANRLGIGQLKWELEDLSFRYLEPEIYKKIAKQL 216
>gi|82703620|ref|YP_413186.1| (p)ppGpp synthetase SpoT/RelA [Nitrosospira multiformis ATCC 25196]
gi|82411685|gb|ABB75794.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Nitrosospira multiformis ATCC 25196]
Length = 729
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ R K +YSI+ KM+RK V ++ D RA+R++V + ++ CY+ L
Sbjct: 246 GIKAQITGRPKHIYSIYRKMKRKGVDFKEIQDTRAVRILVDE---------VKDCYAALG 296
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW+PI EFDDYI PK + Y+SLHTAV GP+ +EVQIRT +MH ++E G+AAH
Sbjct: 297 LVHNLWMPIPKEFDDYIAKPKGNDYRSLHTAVIGPEDKVVEVQIRTHEMHRHSEMGVAAH 356
Query: 397 WLYKETGNK 405
W YKE +
Sbjct: 357 WRYKEGAKR 365
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 82/147 (55%), Gaps = 3/147 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DT+ AG+LH V + + FG VA LV GV R+ I L + N+ G+
Sbjct: 73 DTLAAGVLHAVPEYLEGYEEELATAFGPIVAHLVEGVRRVGRIQVLRSANSTDNIGNGS- 131
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ LR MLL M +D RVV+I LADRL MR + A A A+ TL I+ LA+
Sbjct: 132 --AQIEALRKMLLAMAEDIRVVIIALADRLQTMRYVAARNVAGRWEAAEVTLNIFAPLAN 189
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLGLW +K ELEDL F + +P+ ++K+
Sbjct: 190 RLGLWQVKWELEDLSFRITEPERYKKI 216
>gi|422005240|ref|ZP_16352435.1| GTP pyrophosphokinase [Leptospira santarosai serovar Shermani str.
LT 821]
gi|417256095|gb|EKT85535.1| GTP pyrophosphokinase [Leptospira santarosai serovar Shermani str.
LT 821]
Length = 674
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW PI G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPIPGRFKDYIATPKTNLYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 MYKE 349
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HNMRT+ P K R +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRVILIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F VL P+ +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQVLNPEEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|28198473|ref|NP_778787.1| ATP:GTP 3'-pyrophosphotransferase [Xylella fastidiosa Temecula1]
gi|182681151|ref|YP_001829311.1| RelA/SpoT family protein [Xylella fastidiosa M23]
gi|386084649|ref|YP_006000931.1| RelA/SpoT family protein [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|417559170|ref|ZP_12210123.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase [Xylella
fastidiosa EB92.1]
gi|28056557|gb|AAO28436.1| ATP:GTP 3'-pyrophosphotranferase [Xylella fastidiosa Temecula1]
gi|182631261|gb|ACB92037.1| RelA/SpoT family protein [Xylella fastidiosa M23]
gi|307579596|gb|ADN63565.1| RelA/SpoT family protein [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|338178254|gb|EGO81246.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase [Xylella
fastidiosa EB92.1]
Length = 718
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +VYD +A+RV+V D + CY+ L
Sbjct: 234 GVCAEVSGRPKHIYSIWRKMQKKRLHFEQVYDLQAVRVMVED---------MAACYAALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ GEFDDYI PK + Y+SLHTAV GP+ +EVQIRT +MH +AE G+AAH
Sbjct: 285 VVHALWAPVPGEFDDYIARPKANDYRSLHTAVLGPEERTVEVQIRTHEMHAHAELGVAAH 344
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 345 WKYKEDGK 352
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 65 NVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLL 124
++ G LR +LL +V D RVV I LA +L MR L ++ RA+AQ T
Sbjct: 111 TLHAGCAAGRNGEGLRRLLLALVHDLRVVPILLARQLAKMRAAGVLLESQRRALAQLTRD 170
Query: 125 IWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
I LA+RLG+W LK ELEDL F L+ +I+R + + L +RV R I+ I
Sbjct: 171 IHAPLANRLGIWQLKWELEDLAFCYLESEIYRSIASALDE-----SRVARERYISVI 222
>gi|116328856|ref|YP_798576.1| GTP pyrophosphokinase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116330538|ref|YP_800256.1| GTP pyrophosphokinase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116121600|gb|ABJ79643.1| GTP pyrophosphokinase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116124227|gb|ABJ75498.1| GTP pyrophosphokinase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 674
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 MYKE 349
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HNMRT+ P K + +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRVILIKLADKTHNMRTLSFQLPEKQKRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F VL P+ +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQVLNPEEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|418721778|ref|ZP_13280952.1| putative GTP diphosphokinase [Leptospira borgpetersenii str. UI
09149]
gi|421095922|ref|ZP_15556630.1| putative GTP diphosphokinase [Leptospira borgpetersenii str.
200801926]
gi|410361337|gb|EKP12382.1| putative GTP diphosphokinase [Leptospira borgpetersenii str.
200801926]
gi|410741822|gb|EKQ90575.1| putative GTP diphosphokinase [Leptospira borgpetersenii str. UI
09149]
gi|456889585|gb|EMG00473.1| putative GTP diphosphokinase [Leptospira borgpetersenii str.
200701203]
Length = 674
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 MYKE 349
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HNMRT+ P K + +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRVILIKLADKTHNMRTLSFQLPEKQKRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F VL P+ +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQVLNPEEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|381210458|ref|ZP_09917529.1| GTP pyrophosphokinase [Lentibacillus sp. Grbi]
Length = 733
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E +S R K LYSI+ KM +++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIEADISGRPKHLYSIYRKMAKQNKQFNEIYDLLAVRILVH---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT++MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNLYQSLHTTVIGPKGDPLEVQIRTKEMHEIAEYGIAAH 343
Query: 397 WLYKE 401
W YKE
Sbjct: 344 WAYKE 348
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 86/146 (58%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ G LHDVV+D +L +E+ F +EVA LV GV++L I +++ Q
Sbjct: 70 TIAGGFLHDVVEDTEVTLEQLEDSFNEEVAMLVDGVTKLGKI-----KYKSKEALQ---- 120
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
A + R M + M D RV+LIKLADRLHNMRT+ LPP K R ++ ETL I+ LA R
Sbjct: 121 ---AENHRKMFVAMARDIRVILIKLADRLHNMRTLKHLPPNKQRRISNETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISTIKWELEDTALRYLNPQQYYRI 203
>gi|217972410|ref|YP_002357161.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica OS223]
gi|217497545|gb|ACK45738.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS223]
Length = 736
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 83/130 (63%), Gaps = 9/130 (6%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKHLKFDELFDVRAVRIVTD---------RLQDCYGALGVVHTLWHH 301
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE N
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKEGNN 361
Query: 405 KLQSISSMDE 414
+ S +E
Sbjct: 362 QSGKQSGYEE 371
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A IL V D + +I+E+FG+ +A+LVA V ++ I L +IN N +
Sbjct: 72 IETLQAAILFVVFDAGLLTEDAIKEKFGEPLARLVASVVTMNAIGAL-----KINPNSRS 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ LA
Sbjct: 127 T-EPQIDNIRRMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADIYAPLA 185
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELED+ F L P ++ + L
Sbjct: 186 NRLGIGQLKWELEDISFRYLHPDTYKDIAKQL 217
>gi|418735206|ref|ZP_13291618.1| putative GTP diphosphokinase [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410749462|gb|EKR02354.1| putative GTP diphosphokinase [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 674
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 MYKE 349
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HNMRT+ P K + +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRVILIKLADKTHNMRTLSFQLPEKQKRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F VL P+ +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQVLNPEEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|398333292|ref|ZP_10517997.1| GTP pyrophosphokinase [Leptospira alexanderi serovar Manhao 3 str.
L 60]
Length = 674
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 MYKE 349
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HNMRT+ P K R +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRVILIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F VL P+ +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQVLNPEEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|160876395|ref|YP_001555711.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica OS195]
gi|378709596|ref|YP_005274490.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica OS678]
gi|160861917|gb|ABX50451.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS195]
gi|315268585|gb|ADT95438.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS678]
Length = 736
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 83/130 (63%), Gaps = 9/130 (6%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKHLKFDELFDVRAVRIVTD---------RLQDCYGALGVVHTLWHH 301
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE N
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKEGNN 361
Query: 405 KLQSISSMDE 414
+ S +E
Sbjct: 362 QSGKQSGYEE 371
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A IL V D + +I+E+FG+ +A+LVA V ++ I L +IN N +
Sbjct: 72 IETLQAAILFVVFDAGLLTEDAIKEKFGEPLARLVASVVTMNAIGAL-----KINPNSRS 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ LA
Sbjct: 127 T-EPQIDNIRRMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADIYAPLA 185
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELED+ F L P ++ + L
Sbjct: 186 NRLGIGQLKWELEDISFRYLHPDTYKDIAKQL 217
>gi|260891210|ref|ZP_05902473.1| GTP diphosphokinase [Leptotrichia hofstadii F0254]
gi|260859237|gb|EEX73737.1| GTP diphosphokinase [Leptotrichia hofstadii F0254]
Length = 389
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 83/131 (63%), Gaps = 9/131 (6%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K LYSI+ KM K +YD A+R++V KN CY++L I+H L
Sbjct: 266 VTGRPKHLYSIYRKMNEKQKRFMDLYDLIAIRIIVEKKNE---------CYNVLGIIHDL 316
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+IP+ F DY+ PKP+GYQS+HT V+GP+ +E+QIRTQ+MHE AE G+AAHW YKE
Sbjct: 317 FIPVFDRFKDYVAQPKPNGYQSIHTTVKGPNNQNVEIQIRTQEMHEIAEEGVAAHWKYKE 376
Query: 402 TGNKLQSISSM 412
L+ + M
Sbjct: 377 KNQNLKMKNFM 387
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 92/157 (58%), Gaps = 14/157 (8%)
Query: 3 IPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHR 62
I + K DT+VAG+LHDVV+D L IE+ FG +V KLV GV++L
Sbjct: 90 ILADMKMDTDTIVAGLLHDVVEDTLIVLEDIEDNFGKDVKKLVDGVTKLR---------- 139
Query: 63 RINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQET 122
N ++ + R M++ M +D RVV+IKLADRLHNMRT+ + P K + ++ET
Sbjct: 140 ----NLPRTDSKKLENKRKMVIAMSEDIRVVIIKLADRLHNMRTLKYMKPEKQQEKSKET 195
Query: 123 LLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 159
+ I+ +A R+G+ +K ELED+ F L P + +++
Sbjct: 196 IEIYAPIAHRIGMARIKWELEDISFRFLYPNDYYEIK 232
>gi|456865837|gb|EMF84149.1| putative GTP diphosphokinase [Leptospira weilii serovar Topaz str.
LT2116]
Length = 674
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 MYKE 349
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HNMRT+ P K R +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRVILIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F VL P+ +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQVLNPEEYQEVKKNINSKKSER 215
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TE++ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTEIRSGDQIEI 450
>gi|421100332|ref|ZP_15560964.1| putative GTP diphosphokinase [Leptospira borgpetersenii str.
200901122]
gi|410796642|gb|EKR98769.1| putative GTP diphosphokinase [Leptospira borgpetersenii str.
200901122]
Length = 674
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 MYKE 349
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HNMRT+ P K R +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRVILIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F VL P+ +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQVLNPEEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|421130113|ref|ZP_15590310.1| putative GTP diphosphokinase [Leptospira kirschneri str.
2008720114]
gi|410358572|gb|EKP05728.1| putative GTP diphosphokinase [Leptospira kirschneri str.
2008720114]
Length = 674
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 MYKE 349
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HN+RT+ PP K R +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRVILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F +L P +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQILNPDEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|302339536|ref|YP_003804742.1| (p)ppGpp synthetase I SpoT/RelA [Spirochaeta smaragdinae DSM 11293]
gi|301636721|gb|ADK82148.1| (p)ppGpp synthetase I, SpoT/RelA [Spirochaeta smaragdinae DSM
11293]
Length = 668
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 89/137 (64%), Gaps = 9/137 (6%)
Query: 269 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 328
L+ + +++ + +R K LYSI+ KM+R+ I ++YD +R++ +
Sbjct: 220 LLKAAAAEKIDIEVMARAKHLYSIYLKMKRRKKDISEIYDLLGIRIICSTTSE------- 272
Query: 329 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 388
CY+LL +VH+LW PI+G F DYI PK + YQSLHT V G DG +E+QIRT++MH
Sbjct: 273 --CYTLLGVVHKLWPPIEGRFKDYIAMPKANNYQSLHTTVMGFDGQLIEIQIRTREMHNL 330
Query: 389 AEHGLAAHWLYKETGNK 405
AE+G+AAHW+YK+ G++
Sbjct: 331 AEYGIAAHWVYKQDGSR 347
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 90/167 (53%), Gaps = 14/167 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+ ++A +LHDV++D L + + FG ++ LV GV+++S V +
Sbjct: 64 EAIIAALLHDVLEDTDIELPELRKRFGKQIGALVDGVTKISI------------VKAKSK 111
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+EA +R ML M D RV++IKLAD+ HNM T+ L P K +A+A E L I+ LA
Sbjct: 112 SVQEAETIRKMLFAMTRDIRVIIIKLADKYHNMSTLEYLSPEKRKAIATECLDIYAPLAD 171
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRI 178
RLG+ LKAELEDL L P + + +AS R Y ++I
Sbjct: 172 RLGISWLKAELEDLALKHLNPSAWEYINQFVAS--KKTERANYLKKI 216
>gi|359727202|ref|ZP_09265898.1| GTP pyrophosphokinase [Leptospira weilii str. 2006001855]
gi|417779516|ref|ZP_12427301.1| putative GTP diphosphokinase [Leptospira weilii str. 2006001853]
gi|410780345|gb|EKR64939.1| putative GTP diphosphokinase [Leptospira weilii str. 2006001853]
Length = 674
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 MYKE 349
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTQYSRDDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HNMRT+ P K R +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRVILIKLADKTHNMRTLSFQLPEKQRRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F VL P+ +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQVLNPEEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|381179641|ref|ZP_09888490.1| (p)ppGpp synthetase I, SpoT/RelA [Treponema saccharophilum DSM
2985]
gi|380768465|gb|EIC02455.1| (p)ppGpp synthetase I, SpoT/RelA [Treponema saccharophilum DSM
2985]
Length = 613
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 10/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++V ++SR K YSI+ KMR+++ G ++YD ALR++ CY+L+
Sbjct: 244 GIKVQITSRAKHFYSIYQKMRKRNKGADELYDLLALRIIC---------TTTTECYTLIG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW P+DG F DYI PK +GYQSLHT V +G LE+QIRT MH AEHG+A+H
Sbjct: 295 IVHGLWKPMDGRFKDYIAMPKSNGYQSLHTTVVC-EGKPLEIQIRTADMHNMAEHGIASH 353
Query: 397 WLYKETGN 404
WLYK+ N
Sbjct: 354 WLYKKGMN 361
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ G LH + + + +E FG +A +V S+++ + +N T+
Sbjct: 82 IACGFLHSIFEIDGITTDEVESRFGKTIASIVRDTSKIT----------SLKINSKTI-- 129
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
++A+ +R ML M+DD RV+L+KLADRL MR + A+ P K R VA E L IW LA RL
Sbjct: 130 QQADSIRKMLFAMIDDVRVILVKLADRLDRMRNLKAIAPKKQRLVAAEVLDIWAPLADRL 189
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G+ +K+E+EDL P +F++++ +A R
Sbjct: 190 GMQNVKSEMEDLSLKYANPDVFQQIKRIVAQKKDER 225
>gi|375335787|ref|ZP_09777131.1| (p)ppGpp synthetase I SpoT/RelA [Succinivibrionaceae bacterium
WG-1]
Length = 747
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K +YSI+ KM++K + +YD RA+RV+V +Q CY+ L
Sbjct: 242 GLNAEVYGRPKHIYSIWRKMQKKHLDFSGLYDVRAVRVIV---------DRLQDCYAALG 292
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH + I EFDDYI NPKP+GYQS+HT V GP+G +E+QIRT +MH+ AE G+AAH
Sbjct: 293 VVHTKYHHIPREFDDYIANPKPNGYQSIHTVVIGPNGKTVEIQIRTSEMHKNAELGVAAH 352
Query: 397 WLYKETGN 404
W YKE GN
Sbjct: 353 WKYKEGGN 360
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+DT A IL+ ++ +L + +FG ++A ++ GV + I L N++ T
Sbjct: 71 LDTFKAAILYPHLEANYFTLEQAKADFGSKIANILHGVRDMEAIRFLH------NLSSNT 124
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ + +++R ML+ MV+D R V+IKLA+R+ +R + VA+E I+ LA
Sbjct: 125 VTDSQIDNVRRMLIAMVEDVRAVVIKLAERIAALREVKNADEETRVLVAKEISNIYAPLA 184
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+ LK ELEDL F L P I++++
Sbjct: 185 NRLGIGQLKWELEDLAFRYLHPDIYKQI 212
>gi|434402920|ref|YP_007145805.1| (p)ppGpp synthetase, RelA/SpoT family [Cylindrospermum stagnale PCC
7417]
gi|428257175|gb|AFZ23125.1| (p)ppGpp synthetase, RelA/SpoT family [Cylindrospermum stagnale PCC
7417]
Length = 756
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D ++ IEE FG EV +LV GV++LS +IN T
Sbjct: 87 IAAGFLHDVVEDTEVTIDQIEERFGPEVRQLVEGVTKLS----------KINFKSKT--E 134
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M D RV+++KLADRLHNMRT+ +P K R +AQET I+ LA+RL
Sbjct: 135 SQAENFRRMFLAMAQDIRVIVVKLADRLHNMRTLQFMPDEKRRRIAQETRDIFAPLANRL 194
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G+W K ELEDL F L+P+ FR+++ ++ + R
Sbjct: 195 GIWQFKWELEDLAFKYLEPEAFRQIQTYVSEKRAAR 230
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 82/136 (60%), Gaps = 10/136 (7%)
Query: 280 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 339
V +S R K LY I+ KM R+ H++YD ALR++V + CY L +VH
Sbjct: 253 VDVSGRTKHLYGIYQKMHRQQKEFHEIYDLAALRIIVQTN---------EECYRALAVVH 303
Query: 340 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 399
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRTQ+MH AE+G+AAHW Y
Sbjct: 304 DAFRPIPGRFKDYIGLPKPNRYQSLHTGVMGLTGRPLEVQIRTQEMHHVAEYGIAAHWKY 363
Query: 400 KETGNKLQS-ISSMDE 414
KE+G S ++ DE
Sbjct: 364 KESGGSNNSQVTGTDE 379
>gi|114777339|ref|ZP_01452336.1| GTP pyrophosphokinase [Mariprofundus ferrooxydans PV-1]
gi|114552121|gb|EAU54623.1| GTP pyrophosphokinase [Mariprofundus ferrooxydans PV-1]
Length = 646
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+SKM KD +++D ALR+ V I CY++L
Sbjct: 163 GIDARVYGRPKHIYSIWSKMTHKDKQFSELFDVLALRITV---------TTIAECYTVLG 213
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H W I EFDDYI N KP+GYQSLHTAV GP+G +E+QIRT+ MHE+AE G+AAH
Sbjct: 214 LIHGRWHHIPKEFDDYIANTKPNGYQSLHTAVYGPEGKPVEIQIRTKAMHEFAEFGVAAH 273
Query: 397 WLYKE 401
W YKE
Sbjct: 274 WRYKE 278
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 21/164 (12%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
I+ EF DEV +V G+ +L +Q G ++ LR MLL MVDD RV
Sbjct: 19 IQHEFSDEVVHMVQGLEKL----------HGFKASQSD-GQVQSERLRRMLLAMVDDVRV 67
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VLIKLA R+ +R + + +A E+L I+ +A+RLG+ LK ELEDL F LQP
Sbjct: 68 VLIKLAYRVQRLRELSKADEETQKRIASESLEIFSPIANRLGIGQLKWELEDLSFRYLQP 127
Query: 153 QIFRKMRADLASMWSPR--NRVGYSRR----ITTIVSSPPLDER 190
+ +++ +A+M + R Y ++ I T+++S +D R
Sbjct: 128 ETYKR----IANMLEEKRGGRETYIKQVVTEINTLLNSSGIDAR 167
>gi|46199657|ref|YP_005324.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
thermophilus HB27]
gi|384431896|ref|YP_005641256.1| (p)ppGpp synthetase I SpoT/RelA [Thermus thermophilus SG0.5JP17-16]
gi|46197283|gb|AAS81697.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
thermophilus HB27]
gi|333967364|gb|AEG34129.1| (p)ppGpp synthetase I, SpoT/RelA [Thermus thermophilus
SG0.5JP17-16]
Length = 727
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 120/212 (56%), Gaps = 27/212 (12%)
Query: 229 KFLHDLAKSS-----EAQKKAK--VVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 281
++LH A +S +A ++A+ ++Q A L +A +E L+ S + G EVT
Sbjct: 195 RYLHPEAFASLSARIQATQEARERLIQKAIHLLQETLARDELLQ-------SQLQGFEVT 247
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG-TLHGPAI---QCCYSLLDI 337
R K LYSI+ KM R+ + ++YD A+RV++ K T A+ Q CY +L +
Sbjct: 248 --GRPKHLYSIWKKMEREGKTLEQIYDLLAVRVILDPKPAPTRESQALREKQVCYHVLGL 305
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW PI G DYI PKP+GYQSLHT V +G LEVQIRT++MH AE+G+AAHW
Sbjct: 306 VHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIALEGLPLEVQIRTREMHRVAEYGIAAHW 365
Query: 398 LYK-------ETGNKLQSISSMDESDIEASSS 422
LYK E ++ + S+ E E SSS
Sbjct: 366 LYKEGLTDPEEVKRRVSWLKSIQEWQKEFSSS 397
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 96/163 (58%), Gaps = 13/163 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV AG+LHD ++D + +E FG V ++V G +++S + +L L
Sbjct: 68 DTVAAGLLHDTLEDCGVAPEELERRFGPTVRRIVEGETKVSKLYKL-----------ANL 116
Query: 72 GHEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
EE A DLR M + M +D R++++KLADRLHN+RT+ +PP K + +AQETL I+ L
Sbjct: 117 EGEERRAEDLRQMFIAMAEDVRIIIVKLADRLHNLRTLEHMPPEKQKRIAQETLEIYAPL 176
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
A RLG+ LK ELEDL F L P+ F + A + + R R+
Sbjct: 177 AHRLGMGQLKWELEDLSFRYLHPEAFASLSARIQATQEARERL 219
>gi|422348597|ref|ZP_16429490.1| RelA/SpoT family protein [Sutterella wadsworthensis 2_1_59BFAA]
gi|404659128|gb|EKB31986.1| RelA/SpoT family protein [Sutterella wadsworthensis 2_1_59BFAA]
Length = 703
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 89/138 (64%), Gaps = 9/138 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + +++D RA+R++V ++ CY +L
Sbjct: 223 GIKAEVSGRPKHIYSIWKKMQRKHLRFDQLFDVRAVRIIVD---------TVERCYQVLS 273
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + I E+DDYI PKP+GYQSLHT V G LE+QIRT+ MHE+AE G+AAH
Sbjct: 274 IVHENFPVISKEYDDYIAKPKPNGYQSLHTVVTDKAGRPLEIQIRTRAMHEFAELGVAAH 333
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE GN + S+ ++
Sbjct: 334 WRYKEAGNSNGATSAEEQ 351
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 67/130 (51%), Gaps = 5/130 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
IE+ FG V LV L +N+L RR R N T EA +R M L M D RV
Sbjct: 73 IEKSFGPAVNGLV---QELGQVNELSRRARSENEEANTRHQVEA--MRRMFLSMCKDLRV 127
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL+KLA RL +R A A ETL ++ LA+RLG+W LK ELEDL +P
Sbjct: 128 VLLKLASRLQTLRWFAASKREGAEKFGTETLDLYAPLANRLGIWQLKWELEDLSLRFTRP 187
Query: 153 QIFRKMRADL 162
+R++ L
Sbjct: 188 SEYREIAQQL 197
>gi|398338439|ref|ZP_10523142.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
kirschneri serovar Bim str. 1051]
gi|418676031|ref|ZP_13237317.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418688085|ref|ZP_13249242.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418695002|ref|ZP_13256028.1| putative GTP diphosphokinase [Leptospira kirschneri str. H1]
gi|418739479|ref|ZP_13295863.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421089191|ref|ZP_15550005.1| putative GTP diphosphokinase [Leptospira kirschneri str. 200802841]
gi|421106960|ref|ZP_15567521.1| putative GTP diphosphokinase [Leptospira kirschneri str. H2]
gi|400323796|gb|EJO71644.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|409957161|gb|EKO16076.1| putative GTP diphosphokinase [Leptospira kirschneri str. H1]
gi|410002142|gb|EKO52665.1| putative GTP diphosphokinase [Leptospira kirschneri str. 200802841]
gi|410007974|gb|EKO61652.1| putative GTP diphosphokinase [Leptospira kirschneri str. H2]
gi|410737509|gb|EKQ82250.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410753279|gb|EKR10248.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 674
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 MYKE 349
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HN+RT+ PP K R +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRVILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F +L P +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQILNPDEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|210623794|ref|ZP_03294054.1| hypothetical protein CLOHIR_02005 [Clostridium hiranonis DSM 13275]
gi|210153376|gb|EEA84382.1| hypothetical protein CLOHIR_02005 [Clostridium hiranonis DSM 13275]
Length = 771
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/134 (47%), Positives = 83/134 (61%), Gaps = 15/134 (11%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K YSI+ KM+ K+ +++D A+RV+V ++ CY++L +VH LW P
Sbjct: 268 RPKHFYSIYRKMKNKNKSFEEIFDLTAVRVLVD---------TVKDCYAVLGVVHTLWKP 318
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I G F DYI PKP+ YQSLHT V GPDG LE+QIRT +MH AE+G+AAHW YKE
Sbjct: 319 IPGRFKDYIAMPKPNMYQSLHTTVVGPDGEPLEIQIRTHEMHNIAEYGIAAHWKYKE--- 375
Query: 405 KLQSISSMDESDIE 418
IS+ E IE
Sbjct: 376 ---GISNSKEDKIE 386
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 81/137 (59%), Gaps = 12/137 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++TV G+LHDVV+D + IE F E+A LV GV++L I ++R Q
Sbjct: 95 IETVSGGLLHDVVEDTEYTYEDIESIFNKEIADLVDGVTKLGKI-----KYRSKEETQ-- 147
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +LR M L M D RV+LIKLADRLHNMRT+ + P KA+ A ETL I+ +A
Sbjct: 148 -----SENLRKMFLAMAKDIRVILIKLADRLHNMRTLNYMDPEKAKYKATETLEIYGGIA 202
Query: 131 SRLGLWALKAELEDLCF 147
RLG+ +K ELEDL
Sbjct: 203 HRLGISKIKWELEDLAL 219
>gi|88813282|ref|ZP_01128521.1| (p)ppGpp synthetase I [Nitrococcus mobilis Nb-231]
gi|88789454|gb|EAR20582.1| (p)ppGpp synthetase I [Nitrococcus mobilis Nb-231]
Length = 737
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 84/129 (65%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E ++ R K +YSI+ KM++K +G H + D RA+RV+V I CY+ L
Sbjct: 247 GIEAQVAGRAKHIYSIWRKMQQKSLGFHDLLDIRAIRVLV---------RTIPDCYAALG 297
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++ LW PI +DDYI PK + YQSLH AV GP G +LEVQIRT++MH+ AE G+AAH
Sbjct: 298 VIQSLWQPIPHGYDDYIATPKANNYQSLHAAVIGPTGKSLEVQIRTREMHQRAELGVAAH 357
Query: 397 WLYKETGNK 405
W YKE G +
Sbjct: 358 WRYKEGGQR 366
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 94/165 (56%), Gaps = 17/165 (10%)
Query: 12 DTVVAGILHDVVDDACESLGSIE-----EEFGDEVAKLVAGVSRLSYINQLLRRHRRINV 66
D ++AG+ H A SLG E EFG+ V L+ GV++++ +++ R +
Sbjct: 78 DAIIAGLFH-----ALPSLGVFEPTRLAAEFGELVPSLIDGVAQVATLSE----QREPSG 128
Query: 67 NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 126
QGT G EA LR M+L M D RVVLI LA RL ++RT+ L A + +A++TL ++
Sbjct: 129 KQGT-GQVEA--LRKMILAMARDIRVVLIALAQRLVDIRTLERLSLAVQQHMARQTLELY 185
Query: 127 CSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
LA+RLGL +K ELED +L+P+ +R++ LA R R
Sbjct: 186 APLANRLGLSRIKWELEDRSLRILEPEDYRRIARSLAEKRVERER 230
>gi|381191174|ref|ZP_09898685.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
sp. RL]
gi|380450963|gb|EIA38576.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
sp. RL]
Length = 727
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 120/212 (56%), Gaps = 27/212 (12%)
Query: 229 KFLHDLAKSS-----EAQKKAK--VVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 281
++LH A +S +A ++A+ ++Q A L +A +E L+ S + G EVT
Sbjct: 195 RYLHPEAFASLSARIQATQEARERLIQKAIHLLQETLARDELLQ-------SQLQGFEVT 247
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG-TLHGPAI---QCCYSLLDI 337
R K LYSI+ KM R+ + ++YD A+RV++ K T A+ Q CY +L +
Sbjct: 248 --GRPKHLYSIWKKMEREGKTLEQIYDLLAVRVILDPKPAPTRESQALREKQVCYHVLGL 305
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW PI G DYI PKP+GYQSLHT V +G LEVQIRT++MH AE+G+AAHW
Sbjct: 306 VHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIALEGLPLEVQIRTREMHRVAEYGIAAHW 365
Query: 398 LYK-------ETGNKLQSISSMDESDIEASSS 422
LYK E ++ + S+ E E SSS
Sbjct: 366 LYKEGLTDPEEVKRRVSWLKSIQEWQKEFSSS 397
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 96/163 (58%), Gaps = 13/163 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV AG+LHD ++D + +E FG V ++V G +++S + +L L
Sbjct: 68 DTVAAGLLHDTLEDCGVAPEELERRFGPTVRRIVEGETKVSKLYKL-----------ANL 116
Query: 72 GHEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
EE A DLR M + M +D R++++KLADRLHN+RT+ +PP K + +AQETL I+ L
Sbjct: 117 EGEERRAEDLRQMFIAMAEDVRIIIVKLADRLHNLRTLEHMPPEKQKRIAQETLEIYAPL 176
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
A RLG+ LK ELEDL F L P+ F + A + + R R+
Sbjct: 177 AHRLGMGQLKWELEDLSFRYLHPEAFASLSARIQATQEARERL 219
>gi|294828236|ref|NP_713265.2| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Lai str. 56601]
gi|417760220|ref|ZP_12408246.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000624]
gi|417765432|ref|ZP_12413394.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|417768721|ref|ZP_12416648.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Pomona]
gi|417776288|ref|ZP_12424129.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000621]
gi|417785522|ref|ZP_12433226.1| putative GTP diphosphokinase [Leptospira interrogans str. C10069]
gi|418666430|ref|ZP_13227853.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|418675521|ref|ZP_13236812.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000623]
gi|418682526|ref|ZP_13243741.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Kennewicki LC82-25]
gi|418693250|ref|ZP_13254313.1| putative GTP diphosphokinase [Leptospira interrogans str. FPW2026]
gi|418705583|ref|ZP_13266447.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|418709158|ref|ZP_13269952.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418717424|ref|ZP_13277086.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 08452]
gi|418723737|ref|ZP_13282571.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 12621]
gi|418731431|ref|ZP_13289830.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 12758]
gi|421116511|ref|ZP_15576896.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|421119978|ref|ZP_15580292.1| putative GTP diphosphokinase [Leptospira interrogans str. Brem 329]
gi|421125931|ref|ZP_15586175.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421135462|ref|ZP_15595584.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|293386086|gb|AAN50283.2| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Lai str. 56601]
gi|400325689|gb|EJO77963.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Kennewicki LC82-25]
gi|400352369|gb|EJP04565.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400356908|gb|EJP13066.1| putative GTP diphosphokinase [Leptospira interrogans str. FPW2026]
gi|409943787|gb|EKN89378.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000624]
gi|409949367|gb|EKN99344.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Pomona]
gi|409951387|gb|EKO05902.1| putative GTP diphosphokinase [Leptospira interrogans str. C10069]
gi|409962535|gb|EKO26269.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 12621]
gi|410011971|gb|EKO70077.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410020359|gb|EKO87162.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410347064|gb|EKO97983.1| putative GTP diphosphokinase [Leptospira interrogans str. Brem 329]
gi|410436583|gb|EKP85695.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410573896|gb|EKQ36937.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000621]
gi|410577683|gb|EKQ45553.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000623]
gi|410757794|gb|EKR19401.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410764849|gb|EKR35552.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410770494|gb|EKR45713.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410773963|gb|EKR53984.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 12758]
gi|410787021|gb|EKR80756.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 08452]
gi|455665880|gb|EMF31366.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Fox 32256]
gi|455791273|gb|EMF43089.1| putative GTP diphosphokinase [Leptospira interrogans serovar Lora
str. TE 1992]
gi|456825939|gb|EMF74313.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Canicola str. LT1962]
Length = 674
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 IYKE 349
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HN+RT+ PP K R +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRVILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F +L P +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQILNPDEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|78485556|ref|YP_391481.1| (p)ppGpp synthetase SpoT/RelA [Thiomicrospira crunogena XCL-2]
gi|78363842|gb|ABB41807.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Thiomicrospira crunogena XCL-2]
Length = 716
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 84/130 (64%), Gaps = 9/130 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI+ KM RK+V I +++D RA+R+ V +Q CY +L
Sbjct: 225 GIEHHISGRPKHIYSIWKKMTRKNVPIDELFDLRAVRIYVD---------TVQQCYEVLG 275
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H W I EFDDYI NPK +GYQS+HT + G + +E+QIRT +MH +AE G+AAH
Sbjct: 276 MIHSRWPYIKDEFDDYIANPKENGYQSIHTVIIGAENKTVEIQIRTHEMHRHAEFGVAAH 335
Query: 397 WLYKETGNKL 406
W YKE G +
Sbjct: 336 WRYKEGGKSI 345
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 16/226 (7%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
+I S K DT++A ++ D+ + + I +EFGD +A++V GV RL++ +
Sbjct: 47 IILSDLKLDRDTLIATLISDMGLEQRYPIEKISDEFGDHIAQMVTGVRRLNHFKEF---- 102
Query: 62 RRINVNQGTLGHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQ 120
+ T +E + LR MLL M D R++++KLA R+ +RT+ P A + +A
Sbjct: 103 -----HPATTSNEVQTERLRQMLLAMTSDIRIMIVKLAFRVARLRTLKNEPEAIRQQIAS 157
Query: 121 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITT 180
ET +I+ LA+RLG+ LK ELEDL F LQP ++++ L + R G I
Sbjct: 158 ETQMIFAPLANRLGIAQLKWELEDLSFRFLQPDTYKEVARQLDA-----KRHGRETYIQG 212
Query: 181 IVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
I+ S + + + + +H+ S+ K + VP D L D R
Sbjct: 213 IIQSLEEMLKDSGIEHHISGRPKHIYSIWKKMTRKNVPIDELFDLR 258
>gi|45656898|ref|YP_000984.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Copenhageni str. Fiocruz L1-130]
gi|421087294|ref|ZP_15548135.1| putative GTP diphosphokinase [Leptospira santarosai str. HAI1594]
gi|421102246|ref|ZP_15562852.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|45600135|gb|AAS69621.1| guanosine polyphosphate pyrophosphohydrolases/synthetases
[Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
gi|410367953|gb|EKP23335.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410430403|gb|EKP74773.1| putative GTP diphosphokinase [Leptospira santarosai str. HAI1594]
Length = 674
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 IYKE 349
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HN+RT+ PP K R +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRVILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F +L P +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQILNPDEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|157374426|ref|YP_001473026.1| GTP diphosphokinase [Shewanella sediminis HAW-EB3]
gi|157316800|gb|ABV35898.1| GTP diphosphokinase [Shewanella sediminis HAW-EB3]
Length = 735
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 80/117 (68%), Gaps = 9/117 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWKKMKGKDLTFDELFDVRAVRIVT---------DRLQDCYGALGVVHTLWHH 301
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTIVVGPEGKTVEIQIRTEQMHEDAELGVAAHWKYKE 358
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A +L + D S +EE FG +A+LV+ V ++ I L +I+ NQ
Sbjct: 72 IETLQASVLFVIFDAGILSKEKLEETFGSGLARLVSSVETMNAIGAL-----KID-NQSR 125
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ LA
Sbjct: 126 AGEPQIDNIRRMLLAMVEDVRAVVIKLAERICLLREVKNAEEETRVLLAREIADIYAPLA 185
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELED+ F L P+ ++++ L
Sbjct: 186 NRLGIGQLKWELEDISFRYLHPETYKEIAKQL 217
>gi|378823441|ref|ZP_09846075.1| RelA/SpoT family protein [Sutterella parvirubra YIT 11816]
gi|378597745|gb|EHY30999.1| RelA/SpoT family protein [Sutterella parvirubra YIT 11816]
Length = 704
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 87/133 (65%), Gaps = 9/133 (6%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K +YSI+ KM+RK + +++D RALR++V ++ CY +L IVH
Sbjct: 229 ISGRPKHIYSIWKKMQRKHLRFDQLFDVRALRIIV---------KTVEECYQVLSIVHEH 279
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ I E+DDYI PKP+GYQSLHT V P G +E+QIRT+ MH++AE G+AAHW YKE
Sbjct: 280 FPVISKEYDDYIAKPKPNGYQSLHTVVTDPAGRPIEIQIRTRAMHDFAELGVAAHWRYKE 339
Query: 402 TGNKLQSISSMDE 414
GN + S+ ++
Sbjct: 340 AGNSEGATSAEEQ 352
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 81/164 (49%), Gaps = 22/164 (13%)
Query: 15 VAGILHDVVDDACESLGS----------------IEEEFGDEVAKLVAGVSRLSYINQLL 58
+AGIL + DD E L + IE+ FG V LV + R IN L
Sbjct: 40 IAGILRGIRDDP-ELLAAAYLFCVPEVVESPYDWIEKSFGPSVTGLVQELVR---INDLS 95
Query: 59 RRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAV 118
R R + +Q +A LR MLL M D RVVL+KLA RL +R + A A
Sbjct: 96 VRAR--SEDQEANASRQAESLRRMLLAMCKDLRVVLLKLASRLQTLRWFASSKMAGADKF 153
Query: 119 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
QETL ++ LA+RLG+W +K ELEDL +P +R + +L
Sbjct: 154 GQETLALYAPLANRLGIWQMKWELEDLSLRFTRPDEYRAIAEEL 197
>gi|197121709|ref|YP_002133660.1| (p)ppGpp synthetase I SpoT/RelA [Anaeromyxobacter sp. K]
gi|220916506|ref|YP_002491810.1| (p)ppGpp synthetase I SpoT/RelA [Anaeromyxobacter dehalogenans
2CP-1]
gi|196171558|gb|ACG72531.1| (p)ppGpp synthetase I, SpoT/RelA [Anaeromyxobacter sp. K]
gi|219954360|gb|ACL64744.1| (p)ppGpp synthetase I, SpoT/RelA [Anaeromyxobacter dehalogenans
2CP-1]
Length = 746
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 78/127 (61%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
GM+ +S R+K +YSI+ KMR+ DV ++ D RV+V + CY L
Sbjct: 250 GMQADVSGRVKHVYSIYRKMRQLDVDFEQIQDVVGFRVIVD---------TVAECYESLG 300
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH LW P+ G F DYI PKP+ YQSLHT V GP G +EVQIRT++MH AE G+AAH
Sbjct: 301 FVHSLWKPVPGRFKDYIAIPKPNLYQSLHTTVVGPAGERIEVQIRTREMHRIAEEGVAAH 360
Query: 397 WLYKETG 403
W YKE G
Sbjct: 361 WAYKEKG 367
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 83/140 (59%), Gaps = 11/140 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+VV G+LHD ++D + I E FG E+A LV GV++LS T
Sbjct: 86 SVVTGLLHDTIEDTLATKKEISELFGPEIADLVDGVTKLSQFTA-----------ANTQE 134
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M++ M D RV+L+KLADR HNMRT+ A+ P +A+ETL I+ LA+R
Sbjct: 135 EKQAENFRKMVVAMAKDIRVLLVKLADRTHNMRTLDAMKPESQERIARETLDIYAPLANR 194
Query: 133 LGLWALKAELEDLCFAVLQP 152
LG+ +K ELE+L F L+P
Sbjct: 195 LGIQWIKTELEELSFKYLRP 214
>gi|418702279|ref|ZP_13263190.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Bataviae str. L1111]
gi|410758798|gb|EKR25024.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Bataviae str. L1111]
Length = 674
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 IYKE 349
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 95/156 (60%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D R +LIKLAD+ HN+RT+ PP K R +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRAILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F +L P +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQILNPDEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|410938453|ref|ZP_11370300.1| putative GTP diphosphokinase [Leptospira noguchii str. 2006001870]
gi|410786378|gb|EKR75322.1| putative GTP diphosphokinase [Leptospira noguchii str. 2006001870]
Length = 680
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 241 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 291
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 292 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 351
Query: 398 LYKE 401
+YKE
Sbjct: 352 MYKE 355
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 78 ICAGLLHDVIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 125
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HN+RT+ PP K R +AQETL ++ +A RL
Sbjct: 126 EAAENIRKIIVATIKDIRVILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRL 185
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F +L P +++++ ++ S S R
Sbjct: 186 GIYKIKSELEDLAFQILNPDEYQEVKKNINSKKSER 221
Score = 42.4 bits (98), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 399 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 456
>gi|392549117|ref|ZP_10296254.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Pseudoalteromonas
rubra ATCC 29570]
Length = 718
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 86/135 (63%), Gaps = 9/135 (6%)
Query: 267 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 326
EL+ S G+E + R K +YSI+ KM +K+ +++D RA+RVVV +
Sbjct: 224 ELVQSKLKDAGIEAEVYGRPKHIYSIYKKMMQKNYEFDQLFDIRAMRVVVNE-------- 275
Query: 327 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 386
IQ CY L IVH W + EFDDY+ PK +GYQS+HT V GP+G +E+QIRTQ MH
Sbjct: 276 -IQDCYGALGIVHTNWRHLHKEFDDYVATPKQNGYQSIHTVVFGPEGKTVEIQIRTQAMH 334
Query: 387 EYAEHGLAAHWLYKE 401
+ AE G+AAHW+YKE
Sbjct: 335 QDAELGVAAHWMYKE 349
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 99/197 (50%), Gaps = 15/197 (7%)
Query: 30 LGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDD 89
L +IE+ G+ VA L+ GV +++ I+ L +QG G + + +R MLL MV+D
Sbjct: 85 LEAIEQAQGENVALLLKGVEQMASISTL--------AHQGK-GSLQIDKIRRMLLAMVED 135
Query: 90 PRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 149
R V+IKLA+++ +R + + A+ T I+ LA+RLG+ LK ELEDL F
Sbjct: 136 VRAVVIKLAEQICYLRAVKNASEEERVVAAKATANIFAPLANRLGIGQLKWELEDLSFRY 195
Query: 150 LQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM- 208
L P ++ + L+ +R Y + +V S D A + +H+ S+
Sbjct: 196 LHPTTYKNIAKQLSD--KRLDREAYMASMVELVQSKLKD---AGIEAEVYGRPKHIYSIY 250
Query: 209 KDLLEAVVPFDILSDRR 225
K +++ FD L D R
Sbjct: 251 KKMMQKNYEFDQLFDIR 267
>gi|269926113|ref|YP_003322736.1| (p)ppGpp synthetase I SpoT/RelA [Thermobaculum terrenum ATCC
BAA-798]
gi|269789773|gb|ACZ41914.1| (p)ppGpp synthetase I, SpoT/RelA [Thermobaculum terrenum ATCC
BAA-798]
Length = 721
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ ++ R K LYSI+ KM +K +++D LRV+ + + CY+ L
Sbjct: 234 GIPAEITGRRKHLYSIYRKMEQKQRSFDQIFDVLGLRVITDE---------VMQCYAALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H +W PI GEFDDYI PK S YQSLHTAV G DG LE+QIRT+ MHE AE+G+AAH
Sbjct: 285 VIHSIWRPIPGEFDDYIAMPKESMYQSLHTAVVGLDGKPLEIQIRTRDMHEVAEYGIAAH 344
Query: 397 WLYKE 401
W YKE
Sbjct: 345 WRYKE 349
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 99/161 (61%), Gaps = 5/161 (3%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
LI + K+ + + +LHD V+D +L IE FG EV++LV G+++L+ I
Sbjct: 53 LILADLKQDAQAIASALLHDTVEDTNLTLDDIETIFGPEVSRLVDGLTKLNKIRLSPDDE 112
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 121
+ Q +A +LR M L MV+DPRVVLIKLADRLHNMRTI LP K + A+E
Sbjct: 113 KDPKEQQA-----QAENLRKMFLAMVEDPRVVLIKLADRLHNMRTIEHLPRDKQLSKARE 167
Query: 122 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
TL I+ LA RLG++ ++ELEDL F VL P +R++ A +
Sbjct: 168 TLEIYAPLAGRLGIFKFRSELEDLSFKVLYPDKYREIAAQV 208
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 27/156 (17%)
Query: 560 EESEYWAVVSAV--FEGKPVDSVVSRRSSDSVAPTSMEA------------SINNKVRLL 605
+ES Y ++ +AV +GKP++ + R VA + A + +++ L
Sbjct: 305 KESMYQSLHTAVVGLDGKPLEIQIRTRDMHEVAEYGIAAHWRYKEGKKANEAAEHRITWL 364
Query: 606 RTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAA 665
R +L W +++ +S S + E + V PNG+++ L G+T D A
Sbjct: 365 RQLLEWRDEVADAQEFVESM---------KSDLLQEHIYVFTPNGDVVELPRGATPIDFA 415
Query: 666 MKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEVR 697
++ E G + VNG+LV + L++GD+V++R
Sbjct: 416 YRIHTEIGHHCVGATVNGRLVSLDYVLQNGDVVKIR 451
>gi|429735228|ref|ZP_19269197.1| GTP diphosphokinase [Selenomonas sp. oral taxon 138 str. F0429]
gi|429159340|gb|EKY01855.1| GTP diphosphokinase [Selenomonas sp. oral taxon 138 str. F0429]
Length = 743
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 97/158 (61%), Gaps = 18/158 (11%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K YSI+ KM+R + ++++YD A+RV+V +++ CY +L
Sbjct: 235 GIKAEIKGRAKHFYSIYRKMKRDNKSVNEIYDLSAVRVLVS---------SVKDCYGVLG 285
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H +W PI G F DYI PK +GYQSLHT V G LE+QIRT+ MH+ +E G+AAH
Sbjct: 286 VIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-THGYPLEIQIRTKAMHQVSEFGVAAH 344
Query: 397 WLYKETGNKLQSISSMDESDIEAS-----SSLSKDTDD 429
W YKE G +SI + DE+D + S SL K+ DD
Sbjct: 345 WKYKEAG---RSIGATDENDQKMSWLRQMVSLQKEYDD 379
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 87/144 (60%), Gaps = 12/144 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +LHDVV+D C +L +E EFG + L+ GV++L I + + ++
Sbjct: 71 ETICAALLHDVVEDTCATLEEMEAEFGKNIMALIDGVTKLGRIEYMSKEDVQLE------ 124
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ R M L M D RV++IKLADRLHNMRT+ + K + +A+ETL ++ LA+
Sbjct: 125 ------NYRKMFLAMAKDIRVIMIKLADRLHNMRTLKYMREDKRQRIAKETLEVYAPLAN 178
Query: 132 RLGLWALKAELEDLCFAVLQPQIF 155
RLG+ +K ELEDLC L+P+ +
Sbjct: 179 RLGISNIKVELEDLCLRYLEPEAY 202
>gi|78044718|ref|YP_361036.1| GTP pyrophosphokinase [Carboxydothermus hydrogenoformans Z-2901]
gi|77996833|gb|ABB15732.1| GTP pyrophosphokinase [Carboxydothermus hydrogenoformans Z-2901]
Length = 716
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 81/127 (63%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ + R K LYSIF KMR + +VYD A+RV+V +++ CY++L
Sbjct: 228 NIKAKIEGRPKHLYSIFQKMREQQKDFSEVYDVMAVRVIV---------ESVRDCYTVLG 278
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H +WIP+ G F DYI PK + YQSLHT V GP G LE+QIRT +MH AE+G+AAH
Sbjct: 279 IIHTMWIPVPGRFKDYIAMPKSNMYQSLHTTVIGPFGEPLEIQIRTFEMHRTAEYGIAAH 338
Query: 397 WLYKETG 403
W YKE G
Sbjct: 339 WRYKEGG 345
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 14/171 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ AG+LHDVV+D ++ I EFG+EVA LV GV++LS RI
Sbjct: 64 ETIAAGLLHDVVEDTAYTIEDIAREFGEEVANLVDGVTKLS----------RIEFKNKE- 112
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++ +LR M L M D RV+LIKLADRLHNMRT+ P K + +A+ETL I+ LA
Sbjct: 113 -EQQVENLRKMFLAMAKDIRVILIKLADRLHNMRTLKYHNPEKQKEIARETLEIFAPLAH 171
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
RLG++ +K ELEDL F L P + + +A + R + Y +++ +I+
Sbjct: 172 RLGIYRIKWELEDLAFRYLDPDNYYDIVEKIAKTRAKREQ--YIQQVISIL 220
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 595 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 654
+ + K+ LR +L W+ +L+ ++ K + DSV V P G+++
Sbjct: 348 DKKFDEKLSWLRQILEWQRELKDAREFMETL---KVDIFSDSV------FVFTPKGDVVE 398
Query: 655 LRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
L +GS D A + VG VNG+LV + +LK+GDIVE+
Sbjct: 399 LPAGSVPIDFAYRIHTDVGNRCVGAKVNGRLVPLDYQLKNGDIVEI 444
>gi|225850169|ref|YP_002730403.1| GTP pyrophosphokinase [Persephonella marina EX-H1]
gi|225646582|gb|ACO04768.1| GTP pyrophosphokinase [Persephonella marina EX-H1]
Length = 716
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 96/151 (63%), Gaps = 12/151 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T++AG+LHDVV+D ++ I+E FG+ VA +V GV+++ + N N
Sbjct: 70 TIIAGLLHDVVEDTDTTIDEIKERFGETVALIVDGVTKIG----------KYNFNSKE-- 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
EA + R ML+ M D RV+L+KLADRLHN+RT+ LP K + +A+ETL I+ LA+R
Sbjct: 118 EAEAENFRKMLVSMAKDIRVILVKLADRLHNIRTLDPLPEYKQKRIAKETLDIYAPLAAR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
LGLW +KAELED F L P+ ++K+ LA
Sbjct: 178 LGLWKIKAELEDTSFKYLYPEAYKKITTYLA 208
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ + R K LYSI+ K RKD+ + +YD +RV+V I+ CY L
Sbjct: 233 NIKADIQYRAKHLYSIYEKTLRKDLSLSDIYDVYGVRVLVH---------TIKDCYLALG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H LW P+ G F DYI PK + YQ+LHT V P G +E+QI+T KMH AE G+AAH
Sbjct: 284 LIHSLWPPVPGRFKDYISLPKSNMYQALHTTVVAPKGKFVEIQIKTYKMHRIAEEGIAAH 343
Query: 397 WLYK 400
W YK
Sbjct: 344 WRYK 347
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 612 EEQLRSEASLRQSKLGGKANGNPD--SVVPG----EVVIVCWPNGEIMRLRSGSTAADAA 665
E+ L+S LR K N + + S V G E V V P G++++L GST D A
Sbjct: 354 EKDLKSFTWLRNILESIKENKDTEIISTVKGDLSNEEVYVFTPKGDLVKLPLGSTPVDFA 413
Query: 666 MK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
+ VG VNG++V +T+LK+GD+VE+
Sbjct: 414 YQIHTQVGHRTAGAKVNGKMVPLDTKLKNGDVVEI 448
>gi|310829081|ref|YP_003961438.1| (p)ppGpp synthetase I [Eubacterium limosum KIST612]
gi|308740815|gb|ADO38475.1| (p)ppGpp synthetase I [Eubacterium limosum KIST612]
Length = 725
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K YSI+ KM+ ++ ++YD A+RV+V +++ CY +L
Sbjct: 234 GIEAKIYGRSKHFYSIYRKMKAQNRNFDEIYDLIAVRVIVD---------SVKDCYGVLG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH W PI G F DYI PKP+ YQS+HT V GP+G E+QIRT++MHE AE+G+AAH
Sbjct: 285 IVHTQWKPIPGRFKDYIAMPKPNMYQSIHTTVIGPNGDPFEIQIRTKEMHETAEYGIAAH 344
Query: 397 WLYKE 401
W YKE
Sbjct: 345 WKYKE 349
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 85/145 (58%), Gaps = 12/145 (8%)
Query: 8 KRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN 67
K +T+VA ILHDV++D + I+E F ++VA LV GV+++ I +
Sbjct: 66 KMDTETIVAAILHDVIEDTSYTYDDIKEMFNEQVADLVEGVTKIGKIEYQSKEE------ 119
Query: 68 QGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWC 127
+A +LR M+L M D RV+LIKL DRLHNMRT+ + +K ++ETL I+
Sbjct: 120 ------SQAENLRKMVLAMSKDIRVILIKLVDRLHNMRTLEYMKESKQIEKSRETLDIYA 173
Query: 128 SLASRLGLWALKAELEDLCFAVLQP 152
+A+RLG+ +KAELEDL L P
Sbjct: 174 PIANRLGIQTIKAELEDLALKYLDP 198
Score = 38.9 bits (89), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 595 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 654
E NK+ LR +L W+++L + L ++ N E V V P G+++
Sbjct: 358 ELRYENKMSWLRQILEWQKELDNANDLVETIKVDLLN---------EEVYVFTPQGKVVE 408
Query: 655 LRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
L GS D A + VG VNG++V N L +GDIVE+
Sbjct: 409 LPMGSCPLDFAYRIHSDVGNSCVGAKVNGKIVPLNYTLNNGDIVEI 454
>gi|90021883|ref|YP_527710.1| GTP diphosphokinase [Saccharophagus degradans 2-40]
gi|89951483|gb|ABD81498.1| RelA/SpoT family protein [Saccharophagus degradans 2-40]
Length = 746
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E + R K +YSI+ KMR+K++ +VYD RA+R++V + + CY++L
Sbjct: 259 AIEADVFGRAKHIYSIWRKMRKKNIDFSQVYDIRAIRILVNTE---------RECYTVLG 309
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI NPK +GY+SLHTAV GP LEVQIRT+ MHE AE G+ AH
Sbjct: 310 IVHALWRNIPLEFDDYIANPKENGYRSLHTAVHGPGSRVLEVQIRTKAMHEEAEFGVCAH 369
Query: 397 WLYK 400
W YK
Sbjct: 370 WRYK 373
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 2/145 (1%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+++ A +L+ V + S + E FG V +L+ GV +++ I+ L Q +
Sbjct: 85 ESLTAALLYRSVRENKISTEVVNELFGRGVHRLIDGVRQMAAISGLTNHSGESVFGQESA 144
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E+A ++R ML+ MVDD RV LIKLA+R +R + P K + VA E I+ LA
Sbjct: 145 --EQAENVRKMLVAMVDDVRVALIKLAERTCAIRAVKKAPLEKRQRVAHEVADIYAPLAH 202
Query: 132 RLGLWALKAELEDLCFAVLQPQIFR 156
RLG+ +K ELEDL F L+P ++
Sbjct: 203 RLGIGHIKWELEDLSFRYLRPYDYK 227
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 595 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 654
EAS K+ LR +L W E++ G + + + V + + + P G ++
Sbjct: 381 EASYEGKIAWLRQVLEWHEEVG----------GSPWDDHLTASVEQDRIYLFTPEGHVID 430
Query: 655 LRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
L G+T D A + VGL + +NG++V N LK D VE+
Sbjct: 431 LPEGATPVDFAFRIHSDVGLRCRGAKINGRIVPLNHPLKTADQVEI 476
>gi|55981686|ref|YP_144983.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
thermophilus HB8]
gi|55773099|dbj|BAD71540.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (ppGpp
synthase) [Thermus thermophilus HB8]
Length = 727
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 120/212 (56%), Gaps = 27/212 (12%)
Query: 229 KFLHDLAKSS-----EAQKKAK--VVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 281
++LH A +S +A ++A+ ++Q A L +A +E L+ S + G EVT
Sbjct: 195 RYLHPEAFASLSARIQATQEARERLIQRAIHLLQETLARDELLQ-------SQLQGFEVT 247
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG-TLHGPAI---QCCYSLLDI 337
R K LYSI+ KM R+ + ++YD A+RV++ K T A+ Q CY +L +
Sbjct: 248 --GRPKHLYSIWKKMEREGKTLEQIYDLLAVRVILDPKPAPTRESQALREKQVCYHVLGL 305
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW PI G DYI PKP+GYQSLHT V +G LEVQIRT++MH AE+G+AAHW
Sbjct: 306 VHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIALEGLPLEVQIRTREMHRVAEYGIAAHW 365
Query: 398 LYK-------ETGNKLQSISSMDESDIEASSS 422
LYK E ++ + S+ E E SSS
Sbjct: 366 LYKEGLTDPEEVKRRVSWLKSIQEWQKEFSSS 397
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 111/201 (55%), Gaps = 16/201 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV AG+LHD ++D + +E FG V ++V G +++S + +L L
Sbjct: 68 DTVAAGLLHDTLEDCGVAPEELERRFGPTVRRIVEGETKVSKLYKL-----------ANL 116
Query: 72 GHEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
EE A DLR M + M +D R++++KLADRLHN+RT+ +PP K + +AQETL I+ L
Sbjct: 117 EGEERRAEDLRQMFIAMAEDVRIIIVKLADRLHNLRTLEHMPPEKQKRIAQETLEIYAPL 176
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDE 189
A RLG+ LK ELEDL F L P+ F + A + + R R+ R I + + DE
Sbjct: 177 AHRLGMGQLKWELEDLSFRYLHPEAFASLSARIQATQEARERL-IQRAIHLLQETLARDE 235
Query: 190 RTASDDESF--TTFDEHVLSM 208
S + F T +H+ S+
Sbjct: 236 LLQSQLQGFEVTGRPKHLYSI 256
>gi|374334752|ref|YP_005091439.1| GTP pyrophosphokinase [Oceanimonas sp. GK1]
gi|372984439|gb|AEY00689.1| GTP pyrophosphokinase [Oceanimonas sp. GK1]
Length = 736
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K +YSI+ KM++K++ +++D RA+RVV +Q CY+ L
Sbjct: 241 GVEAEVYGRPKHIYSIWRKMQKKNLDFDELFDVRAVRVVT---------HRLQDCYAALG 291
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH W I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT +MH+ AE G+AAH
Sbjct: 292 IVHTQWRHIPREFDDYVANPKPNGYQSIHTVVIGPEGKTVEIQIRTDQMHQDAELGVAAH 351
Query: 397 WLYKE 401
W YKE
Sbjct: 352 WKYKE 356
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
DT+ + +L+ V+ S + E+FGD + +L+ GV+ + I L +V+
Sbjct: 70 TDTLKSALLYPFVEQGALSPERVREDFGDSIHRLLQGVADMEAIRSLQ------HVHSDK 123
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ + +R MLL MV+D R V+IKLA+R+ +R + VA+E I+ LA
Sbjct: 124 SNEAQVDKVRRMLLAMVEDVRAVVIKLAERITCLREVKCADEETRVLVAKEIANIYAPLA 183
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+ LK ELEDL F L P+ ++++
Sbjct: 184 NRLGIGQLKWELEDLSFRYLHPETYKRI 211
>gi|384084494|ref|ZP_09995669.1| (p)ppGpp synthetase I SpoT/RelA [Acidithiobacillus thiooxidans ATCC
19377]
Length = 759
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 89/146 (60%), Gaps = 11/146 (7%)
Query: 261 EEALEK--ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 318
+EA++K + L+ + G E +S R K +YSI+SKM++K + + D A RV+V D
Sbjct: 245 KEAVQKIEQALLDRLHQEGFEAQVSGREKHVYSIYSKMQKKGMAFSSILDLHAFRVIVAD 304
Query: 319 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 378
+ CY +L I+H L+ PI G F DYI PK +GYQSLHT + GP G +EV
Sbjct: 305 ---------VDTCYRVLGIIHSLYRPIPGRFKDYIAIPKSNGYQSLHTVLLGPFGHPVEV 355
Query: 379 QIRTQKMHEYAEHGLAAHWLYKETGN 404
QIRT+ MH AE G+AAHWLYK N
Sbjct: 356 QIRTEDMHRVAEAGVAAHWLYKTGMN 381
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 86/141 (60%), Gaps = 12/141 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV A +LHDV++D S ++ E FG EVA++V GVS+L V T
Sbjct: 100 TVQAALLHDVIEDCGISKEALGERFGPEVAEMVDGVSKLG------------QVRFETRE 147
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A + R M L M D RVVLIKLADRLHNMRT+ + P K R +++ETL I+ +A R
Sbjct: 148 EAQAENFRKMFLAMSRDIRVVLIKLADRLHNMRTMGVMTPEKRRRISRETLDIYAPIAQR 207
Query: 133 LGLWALKAELEDLCFAVLQPQ 153
LG+ A++ ELE+L F+ L P+
Sbjct: 208 LGIHAIRIELEELAFSHLYPK 228
>gi|349574920|ref|ZP_08886850.1| GTP diphosphokinase [Neisseria shayeganii 871]
gi|348013452|gb|EGY52366.1| GTP diphosphokinase [Neisseria shayeganii 871]
Length = 736
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + +YD RA+R++V +I CY+ L +VH L
Sbjct: 257 VAGRPKHIYSIYRKMEKKKLDFDGLYDIRAVRILVD---------SIPECYTTLGLVHSL 307
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT +MH++ E G+AAHW YKE
Sbjct: 308 WQPVPGEFDDYIANPKGNGYKSLHTVIIGPEDKGVEVQIRTFEMHQFNEFGVAAHWRYKE 367
Query: 402 TGN 404
G
Sbjct: 368 GGK 370
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 12/152 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+ V A +L D+ + + E+ G+ V LV G+ + + R ++Q
Sbjct: 77 EAVAATLLTDISSYCADWPLQVAEQCGETVCGLVRGIDEVQKLTHFAR------IDQLGT 130
Query: 72 GHE---EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP--PAKARAVAQETLLIW 126
E +A +R MLL MV+D RVVLIKLA R M+ + + P P K RA+A+ETL I+
Sbjct: 131 PEERARQAEAMRKMLLAMVNDIRVVLIKLALRTRTMQFVGSTPDSPEK-RALAKETLDIF 189
Query: 127 CSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W LK +LEDL F +P+ ++++
Sbjct: 190 APLANRLGVWQLKWQLEDLGFRHYRPEEYKRI 221
>gi|401564457|ref|ZP_10805350.1| GTP diphosphokinase [Selenomonas sp. FOBRC6]
gi|400188859|gb|EJO22995.1| GTP diphosphokinase [Selenomonas sp. FOBRC6]
Length = 743
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 97/158 (61%), Gaps = 18/158 (11%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K YSI+ KM+R + ++++YD A+RV+V +++ CY +L
Sbjct: 235 GIKAEIKGRAKHFYSIYRKMKRDNKSVNEIYDLSAVRVLVS---------SVKDCYGVLG 285
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H +W PI G F DYI PK +GYQSLHT V G LE+QIRT+ MH+ +E G+AAH
Sbjct: 286 VIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-THGYPLEIQIRTKAMHQVSEFGVAAH 344
Query: 397 WLYKETGNKLQSISSMDESDIEAS-----SSLSKDTDD 429
W YKE G +SI + DE+D + S SL K+ DD
Sbjct: 345 WKYKEAG---RSIGATDETDQKMSWLRQMVSLQKEYDD 379
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 86/144 (59%), Gaps = 12/144 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +LHDVV+D C +L +E EFG + L+ GV++L I + + ++
Sbjct: 71 ETICAALLHDVVEDTCATLEEMEAEFGKNIMALIDGVTKLGRIEYMSKEDVQLE------ 124
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ R M L M D RV++IKLADRLHNMRT+ + K +A+ETL ++ LA+
Sbjct: 125 ------NYRKMFLAMAKDIRVIMIKLADRLHNMRTLKYMREDKRHRIAKETLEVYAPLAN 178
Query: 132 RLGLWALKAELEDLCFAVLQPQIF 155
RLG+ +K ELEDLC L+P+ +
Sbjct: 179 RLGISNIKVELEDLCLRYLEPEAY 202
>gi|170727691|ref|YP_001761717.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella woodyi ATCC 51908]
gi|169813038|gb|ACA87622.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella woodyi ATCC 51908]
Length = 735
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 80/117 (68%), Gaps = 9/117 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWKKMKGKDLKFDELFDVRAVRIVT---------DRLQDCYGALGVVHTLWHH 301
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTIVVGPEGKTVEIQIRTEQMHEDAELGVAAHWKYKE 358
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 6/152 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A +L V + S +EE FG E+++LV V ++ I L +++ N
Sbjct: 72 IETLQASVLFVVFEAGIISQEDLEERFGAELSRLVMSVETMNAIGAL-----KVD-NDSR 125
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ LA
Sbjct: 126 TSDVKIDNIRRMLLAMVEDVRAVVIKLAERICLLREVKNSDEETRVLLAREIADIYAPLA 185
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELED+ F L P+ ++++ L
Sbjct: 186 NRLGIGQLKWELEDISFRYLHPETYKEIAKQL 217
>gi|84623294|ref|YP_450666.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|84367234|dbj|BAE68392.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
Length = 727
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 90/149 (60%), Gaps = 11/149 (7%)
Query: 258 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 220 VARERYLEAVKRTLSAALAQQGLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 279
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV G +G
Sbjct: 280 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGQEGRT 330
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 331 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 359
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%)
Query: 66 VNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLI 125
++ G + LR +LL ++ D RVV I LA +L MR L + A+AQ T I
Sbjct: 119 LHAGREAGRNSEGLRRLLLSIIHDLRVVPILLARQLSRMRVADRLSKEQRHALAQLTRDI 178
Query: 126 WCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+W +K ELEDL F L+P +R++
Sbjct: 179 HAPLANRLGIWQVKWELEDLAFRHLEPDTYRRI 211
>gi|225026135|ref|ZP_03715327.1| hypothetical protein EUBHAL_00376 [Eubacterium hallii DSM 3353]
gi|224956540|gb|EEG37749.1| RelA/SpoT family protein [Eubacterium hallii DSM 3353]
Length = 758
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 104/171 (60%), Gaps = 16/171 (9%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+VAGILHDVV+D +L + EF DEVA LV GV++L QL H ++++
Sbjct: 88 ETIVAGILHDVVEDTTATLEDLSREFNDEVALLVDGVTKLG---QLSYSHDKMDL----- 139
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A +LR M L M D RV+LIKLADRLHNMRT+ + P K + A+ET+ I+ +A
Sbjct: 140 ---QAENLRKMFLAMAKDIRVILIKLADRLHNMRTLQYMRPEKQKEKARETMDIYAPIAH 196
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
RLG+ +K EL+DL LQP++++ + L + N+ G I +I+
Sbjct: 197 RLGISKIKTELDDLSLKYLQPEVYKDLEEKLQT-----NKEGRENFIQSII 242
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 80/130 (61%), Gaps = 9/130 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R+K L+SI+ KMR ++ + ++YD A+R+ V ++ CY+ L
Sbjct: 253 GIRAEIDGRVKHLFSIYKKMRNQNKTLDQIYDIFAVRIKVD---------TVKDCYAALG 303
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H ++ PI G F DYI PK + YQSLHT + G G+ E+QIRT +MH AE+G+AAH
Sbjct: 304 VIHEMYKPIPGRFKDYIAMPKQNMYQSLHTTLIGSSGTPFEIQIRTFEMHRTAEYGIAAH 363
Query: 397 WLYKETGNKL 406
W YKE G +
Sbjct: 364 WKYKEGGGNI 373
>gi|427405631|ref|ZP_18895836.1| RelA/SpoT family protein [Selenomonas sp. F0473]
gi|425708472|gb|EKU71511.1| RelA/SpoT family protein [Selenomonas sp. F0473]
Length = 742
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 94/158 (59%), Gaps = 18/158 (11%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K YSI+ KM+R + ++++YD A+RV+V +++ CY +L
Sbjct: 235 GIEAEIKGRAKHFYSIYRKMKRDNKSVNEIYDLSAVRVLVS---------SVKDCYGVLG 285
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H +W PI G F DYI PK +GYQSLHT V G LE+QIRT MH +E G+AAH
Sbjct: 286 VIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-THGDPLEIQIRTHAMHRISEFGVAAH 344
Query: 397 WLYKETGNKLQSISSMDESDIEAS-----SSLSKDTDD 429
W YKE G +S + DESD + S SL K+ DD
Sbjct: 345 WKYKEAG---KSTGATDESDQKMSWLRQMVSLQKEYDD 379
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 86/144 (59%), Gaps = 12/144 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +LHDVV+D ++ +EE FG +A L+ GV++L I + + ++
Sbjct: 71 ETICAALLHDVVEDTHATIEEMEELFGKNIAALIDGVTKLGRIQYMSKEDVQLE------ 124
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ R M L M D RV++IKLADRLHNMRT+ + K + +A ETL ++ LA+
Sbjct: 125 ------NYRKMFLAMAKDIRVIMIKLADRLHNMRTLKYMREDKRQRIAHETLEVYAPLAN 178
Query: 132 RLGLWALKAELEDLCFAVLQPQIF 155
RLG+ +K ELEDLC L+P+ +
Sbjct: 179 RLGISNIKIELEDLCLRYLEPEAY 202
>gi|456989321|gb|EMG24130.1| putative GTP diphosphokinase, partial [Leptospira interrogans
serovar Copenhageni str. LT2050]
Length = 493
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 IYKE 349
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HN+RT+ PP K R +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRVILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F +L P +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQILNPDEYQEVKKNINSKKSER 215
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|383316137|ref|YP_005376979.1| RelA/SpoT family (p)ppGpp synthetase [Frateuria aurantia DSM 6220]
gi|379043241|gb|AFC85297.1| (p)ppGpp synthetase, RelA/SpoT family [Frateuria aurantia DSM 6220]
Length = 714
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 90/150 (60%), Gaps = 18/150 (12%)
Query: 256 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
SL +EAL K G++ L+ R K +YSI+ KM+RK + +YD RA+R++
Sbjct: 217 SLTMLKEALAK---------AGIQADLAGRPKHIYSIWKKMQRKSLEFSDLYDIRAVRIL 267
Query: 316 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 375
V ++ CY+ L +VH LW + GEFDDYI PK + Y+SLHTAV GP G
Sbjct: 268 VD---------SVADCYAALGVVHTLWPNLPGEFDDYIARPKGNDYRSLHTAVIGPQGKT 318
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
LEVQIRT +MH+ E G+AAHW YKE G
Sbjct: 319 LEVQIRTHEMHQINELGVAAHWRYKEGGGN 348
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Query: 34 EEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVV 93
+ E G+++ +LVAG + L + G + A LR +LL ++ D RVV
Sbjct: 83 QAEVGEDIRRLVAGQLAAQQVWAL---------HAERPGGQVAEGLRRLLLAIIRDIRVV 133
Query: 94 LIKLADRLHNMRTIYALPP-AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
I LA +L MR P + RA+AQ T I LA+RLG+W LK ELEDL F LQP
Sbjct: 134 FILLARQLACMRLAAQDPDDGERRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRYLQP 193
Query: 153 QIFRKM 158
++++
Sbjct: 194 DTYKRI 199
>gi|385799597|ref|YP_005836001.1| (p)ppGpp synthetase I SpoT/RelA [Halanaerobium praevalens DSM 2228]
gi|309388961|gb|ADO76841.1| (p)ppGpp synthetase I, SpoT/RelA [Halanaerobium praevalens DSM
2228]
Length = 715
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 92/142 (64%), Gaps = 11/142 (7%)
Query: 260 CEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDK 319
+EA+EK L S+ +E + R K LYSI++KM+RK+V ++YD A+RV+V +
Sbjct: 212 IKEAIEKLNLTLESH--SIEADIYGRPKHLYSIYNKMKRKEVEFDEIYDLTAVRVLVEN- 268
Query: 320 NGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQ 379
++ CY +L ++H +W P+ G F DYI PK + YQSLHT V P+G LEVQ
Sbjct: 269 --------VKECYEVLGVLHEIWKPMPGRFKDYIAMPKSNMYQSLHTTVIAPNGDPLEVQ 320
Query: 380 IRTQKMHEYAEHGLAAHWLYKE 401
IRT +MH+ AE+G+AAHW YKE
Sbjct: 321 IRTYEMHKTAEYGIAAHWRYKE 342
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 89/143 (62%), Gaps = 12/143 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
++V+ +LHDVV+D S IE+EFG EVA +V GV++L+ + T
Sbjct: 64 SIVSSLLHDVVEDTSVSSQEIEKEFGAEVAHIVDGVTKLT------------RMQFKTKA 111
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A LR M + M +D RVVLIKLADRLHNMRT+ L AK + ++ET+ I+ LA R
Sbjct: 112 DQQAESLRKMFVAMAEDIRVVLIKLADRLHNMRTLNYLKKAKRKEKSRETIEIYAPLAHR 171
Query: 133 LGLWALKAELEDLCFAVLQPQIF 155
LG+ +K ELEDL F L+P ++
Sbjct: 172 LGMSKIKWELEDLSFRYLKPDMY 194
>gi|168066267|ref|XP_001785062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663355|gb|EDQ50123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 627
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 104/161 (64%), Gaps = 13/161 (8%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHD +DD+ L + + G++VA LV GVS+LS +QL R + T+G+
Sbjct: 159 IAAGLLHDAIDDSNFCLKRLRDTLGEDVANLVIGVSKLSEFSQLAR-------DSNTVGN 211
Query: 74 E-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
EA+ LR M+L +VD RVVL+K+ADRLHN+RT+ ALP K +A ETL I+ LA+R
Sbjct: 212 PMEADRLRTMILALVD-VRVVLVKIADRLHNLRTLEALPSHKQIGIATETLGIFAPLANR 270
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 173
LG+W KAELEDLCF L+P+ + DL+ S R R G
Sbjct: 271 LGIWRWKAELEDLCFKYLKPEDHQ----DLSMRLSERCREG 307
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 98/161 (60%), Gaps = 21/161 (13%)
Query: 251 GIALTSLVACEEALEKELLISTSYIPGME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 309
G+ ++S+ +EAL I G+E + L R K+LYS++ KM +K + ++ D
Sbjct: 307 GLVMSSIKNLDEALR---------IRGVEFIDLCGRPKNLYSVYKKMMKKKRSLEEILDV 357
Query: 310 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 369
LR++V D+N CY L+IVH+L +P G+ DYIV+ KP+GY+SLHT V
Sbjct: 358 IGLRLIVSDENS---------CYEALEIVHQLCMP--GKSKDYIVDSKPNGYKSLHTVVI 406
Query: 370 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSIS 410
G DG LEVQIRT KMH AE+GLAAHW YKE ++ + S
Sbjct: 407 GSDGYPLEVQIRTMKMHHQAEYGLAAHWRYKEDNSEHSAFS 447
>gi|88858178|ref|ZP_01132820.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Pseudoalteromonas
tunicata D2]
gi|88819795|gb|EAR29608.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Pseudoalteromonas
tunicata D2]
Length = 721
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K +YSI+ KM +K+ +++D RALRVVV DK IQ CY+ L
Sbjct: 234 GIGAQVYGRPKHIYSIYKKMYKKNYEFDQLFDIRALRVVV-DK--------IQDCYAALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH W ++ EFDDYI PK +GYQS+HT V GP+G +E+QIRT +MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYIATPKTNGYQSIHTVVVGPEGKTVEIQIRTHEMHQDAELGVAAH 344
Query: 397 WLYKE 401
WLYKE
Sbjct: 345 WLYKE 349
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 75/129 (58%), Gaps = 9/129 (6%)
Query: 30 LGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDD 89
L +IE++ G VA L++GV +++ I+ L + + + +++R MLL MV+D
Sbjct: 85 LETIEKQLGKSVAILLSGVVQMATISMLAYQDKE---------SVQIDNIRRMLLAMVED 135
Query: 90 PRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 149
R V+IKLA ++ ++R + + A+ET I+ LA+RLG+ LK ELEDL F
Sbjct: 136 VRAVVIKLAQQVCHLRAVKNATEEERVIAAKETANIFAPLANRLGIGQLKWELEDLSFRY 195
Query: 150 LQPQIFRKM 158
L P ++K+
Sbjct: 196 LHPDTYKKI 204
>gi|86158972|ref|YP_465757.1| (p)ppGpp synthetase I SpoT/RelA [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775483|gb|ABC82320.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 746
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 78/127 (61%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
GM+ +S R+K +YSI+ KMR+ DV ++ D RV+V + CY L
Sbjct: 250 GMKADVSGRVKHVYSIYRKMRQLDVDFEQIQDVIGFRVIVD---------TVAECYESLG 300
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH LW P+ G F DYI PKP+ YQSLHT V GP G +EVQIRT++MH AE G+AAH
Sbjct: 301 FVHSLWKPVPGRFKDYIAIPKPNLYQSLHTTVVGPAGERIEVQIRTREMHRIAEEGVAAH 360
Query: 397 WLYKETG 403
W YKE G
Sbjct: 361 WAYKEKG 367
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 86/146 (58%), Gaps = 11/146 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+VV G+LHD ++D + I E FG E+A LV GV++LS T
Sbjct: 86 SVVTGLLHDTIEDTLATKKEISELFGLEIADLVDGVTKLSQFTA-----------ANTQE 134
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M++ M D RV+L+KLADR HNMRT+ A+ P +A+ETL I+ LA+R
Sbjct: 135 EKQAENFRKMVVAMAKDIRVLLVKLADRTHNMRTLDAMKPESQERIARETLDIYAPLANR 194
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELE+L F L+P + ++
Sbjct: 195 LGIQWIKTELEELSFKYLRPADYSEL 220
>gi|383764936|ref|YP_005443918.1| GTP pyrophosphokinase [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381385204|dbj|BAM02021.1| GTP pyrophosphokinase [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 825
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 84/134 (62%), Gaps = 10/134 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K +YSI+ KM RK VG ++YD RV+V + CY+ L
Sbjct: 331 GIHAEVYGRPKHIYSIYRKMERKGVGFDQIYDVHGFRVIVD---------TVAECYAALG 381
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ-GPDGSALEVQIRTQKMHEYAEHGLAA 395
++H +W PI GEFDDYI NPK + YQSLHTAV+ DG +E+QIRT++MHE AE G+AA
Sbjct: 382 VIHTMWHPIPGEFDDYIANPKNNMYQSLHTAVRIKKDGRPVEIQIRTREMHEKAELGVAA 441
Query: 396 HWLYKETGNKLQSI 409
HW YKE + + +
Sbjct: 442 HWQYKEQAHHSKDV 455
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 98/161 (60%), Gaps = 6/161 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+ + AG+LHDV +D + + FG +A+LV GV++L I + + ++ +
Sbjct: 161 EALAAGLLHDVAEDTEFDIEYLRIHFGQTIARLVDGVTKLKKIQA------KKSASEAST 214
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+++A LR M++ ++D RV++IKLADRLHNMRT+ K R +A+ETL + +A+
Sbjct: 215 NNQKAESLRKMMMASIEDLRVLIIKLADRLHNMRTLGGQKEHKRRRIARETLDYYAPIAN 274
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
RLG+W +K+ELEDL F L P +++++ + S R ++
Sbjct: 275 RLGIWRIKSELEDLSFRYLNPTSYKEIKNAIQQKESDRQKL 315
>gi|126175347|ref|YP_001051496.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica OS155]
gi|386342093|ref|YP_006038459.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica OS117]
gi|125998552|gb|ABN62627.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS155]
gi|334864494|gb|AEH14965.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS117]
Length = 736
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKHLKFDELFDVRAVRIVTD---------RLQDCYGALGVVHTLWHH 301
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE N
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKEGNN 361
Query: 405 KLQSISSMDE 414
S +E
Sbjct: 362 HSGKQSGYEE 371
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A IL V D + +I+E+FG+ +A+LVA V ++ I L +IN N +
Sbjct: 72 IETLQAAILFVVFDAGLLTEDAIKEKFGEPLARLVASVVTMNAIGAL-----KINPNSRS 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ LA
Sbjct: 127 T-EPQIDNIRRMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADIYAPLA 185
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELED+ F L P ++ + L
Sbjct: 186 NRLGIGQLKWELEDISFRYLHPDTYKDIAKQL 217
>gi|317484827|ref|ZP_07943721.1| RelA/SpoT family protein [Bilophila wadsworthia 3_1_6]
gi|345890061|ref|ZP_08841020.1| hypothetical protein HMPREF0178_03794 [Bilophila sp. 4_1_30]
gi|316923921|gb|EFV45113.1| RelA/SpoT family protein [Bilophila wadsworthia 3_1_6]
gi|345038932|gb|EGW43306.1| hypothetical protein HMPREF0178_03794 [Bilophila sp. 4_1_30]
Length = 738
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 97/152 (63%), Gaps = 15/152 (9%)
Query: 267 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 326
E ++S++ I G T+ R+K +YSI+ KM +++ + ++D A RV+V D
Sbjct: 232 EGILSSNQIEG---TVWGRIKHIYSIYKKMTEQNLTLDDMHDILAFRVIVKD-------- 280
Query: 327 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 386
++ CY++L +VH W P+ G F DYI PK +GYQSLHT V GP+G +E+QIRT++MH
Sbjct: 281 -VRDCYAVLGLVHAQWKPVPGRFKDYISMPKANGYQSLHTTVIGPEGERIEIQIRTEEMH 339
Query: 387 EYAEHGLAAHWLYKETGNKLQSISSMDESDIE 418
AEHG+A+HWLYKE + ++S D + E
Sbjct: 340 RLAEHGVASHWLYKE---RHHAVSVKDAPEFE 368
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 99/171 (57%), Gaps = 17/171 (9%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+V AG+LHD V+D +L ++ EFG++VA +V GV+++S + +
Sbjct: 76 SVAAGLLHDTVEDTKVTLEEVDAEFGEQVADIVDGVTKISMMTF------------DSKE 123
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A ++R M+L M D RV ++KLADR+HNMRT+ K + +AQET+ I+ LA+R
Sbjct: 124 EQQAENIRKMILAMSHDIRVPIVKLADRVHNMRTLDFQKAHKRQRIAQETMDIYVPLANR 183
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 183
LGL LK ELE L F + P ++ ++ S W N+V + I I++
Sbjct: 184 LGLHRLKLELEGLSFKYIHPDVYAQI-----SDWLESNQVVERQLIAKIIA 229
>gi|206901091|ref|YP_002250691.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Dictyoglomus
thermophilum H-6-12]
gi|206740194|gb|ACI19252.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Dictyoglomus
thermophilum H-6-12]
Length = 727
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 95/167 (56%), Gaps = 12/167 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ ++ R K LYSI+ KM R+ + I ++YD +RV+V + + CY +L
Sbjct: 229 GINAEVTGRAKHLYSIYQKMLRRGIEIEEMYDLLGVRVIVNSE---------KECYEVLG 279
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H LW P+ G F DYI N K + YQSLHT V DG LEVQIRT +MH AE+G+AAH
Sbjct: 280 IIHNLWKPVPGRFKDYIANKKSNNYQSLHTTVIAMDGKPLEVQIRTWEMHRVAEYGIAAH 339
Query: 397 WLYKETGNK---LQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQK 440
WLYKE K + S +E L+ D + + +DLF++
Sbjct: 340 WLYKEEIKKPDYFEEKLSWLRQLLEWQKELADDQEFLESIKSDLFER 386
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 88/159 (55%), Gaps = 12/159 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
++AG+LHDV++D IE+EFG +V LV +++L ++ R
Sbjct: 66 VIIAGLLHDVLEDTKVPKEEIEKEFGKDVLSLVEAITKLEKLSFYPTEAYR--------- 116
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
A +LR M + M D RV++IKLADRLHNM+T+ K + +A+ETL I+ LA R
Sbjct: 117 ---AQNLRKMFIAMAKDIRVIIIKLADRLHNMQTLQYHDEEKQKRIAKETLEIYAPLAHR 173
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
LG+W +K LEDL F L+P+ + + +A R +
Sbjct: 174 LGVWDIKWRLEDLAFRYLEPEKYHYVAKKVAETRKEREK 212
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 598 INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRS 657
K+ LR +L W+++L + +S S + + V P G+I+ L
Sbjct: 352 FEEKLSWLRQLLEWQKELADDQEFLES---------IKSDLFEREIYVFTPKGDIIALPQ 402
Query: 658 GSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
GST D A +VG + VNG++V N LK+GDIVE+
Sbjct: 403 GSTPIDFAYAIHTEVGHRCRGAKVNGKIVPLNYVLKNGDIVEI 445
>gi|163750001|ref|ZP_02157245.1| GTP pyrophosphokinase [Shewanella benthica KT99]
gi|161330275|gb|EDQ01256.1| GTP pyrophosphokinase [Shewanella benthica KT99]
Length = 734
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 80/117 (68%), Gaps = 9/117 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 RPKHIYSIWKKMKGKDLKFDELFDVRAVRIVT---------DRLQDCYGALGVVHTLWHH 300
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 301 IPREFDDYVANPKPNGYQSIHTIVVGPEGKTVEIQIRTEQMHEDAELGVAAHWKYKE 357
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 83/152 (54%), Gaps = 6/152 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A +L V D S S+EE FG +A LV V ++ I L +IN +Q
Sbjct: 71 IETLQASVLFVVYDAGILSKESLEESFGKGLATLVRSVETMNAIGAL-----KIN-DQSR 124
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ LA
Sbjct: 125 AAEPQIDNIRRMLLAMVEDVRAVVIKLAERICLLREVKNADEETRVLLAREIADIYAPLA 184
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELED+ F L PQ ++ + L
Sbjct: 185 NRLGIGQLKWELEDISFRYLHPQTYKDIAKQL 216
>gi|421538642|ref|ZP_15984817.1| GTP-pyrophosphokinase [Neisseria meningitidis 93003]
gi|402316312|gb|EJU51861.1| GTP-pyrophosphokinase [Neisseria meningitidis 93003]
Length = 737
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 81/122 (66%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + I CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVDN---------IPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E V +LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVCELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
+A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --RQAEIMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|456966424|gb|EMG08042.1| RelA/SpoT domain protein, partial [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 385
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 IYKE 349
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HN+RT+ PP K R +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRVILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F +L P +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQILNPDEYQEVKKNINSKKSER 215
>gi|312621838|ref|YP_004023451.1| (p)ppgpp synthetase i, spot/rela [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202305|gb|ADQ45632.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor
kronotskyensis 2002]
Length = 726
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 14/173 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ ++VAG+LHDVV+D SL +E EFG E+A+LV GV++L + + R++
Sbjct: 68 IPSIVAGLLHDVVEDTSASLEDVEREFGKEIAELVDGVTKLGKLEFTSKLERQVE----- 122
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ R ML+ M D RV+LIKLADRLHNMRT+ LPP K R AQET+ I+ LA
Sbjct: 123 -------NYRKMLIAMAKDIRVILIKLADRLHNMRTLKYLPPEKQRQKAQETIDIYAPLA 175
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 183
RLG+ +K ELEDL L P+ + + +A R Y +RI +++S
Sbjct: 176 HRLGISKIKWELEDLSLRYLDPEGYYDLVEKIAKKRVEREE--YIKRIISLIS 226
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 81/135 (60%), Gaps = 14/135 (10%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+ R K YSI+ KM+ + + ++YD A+R++V +++ CY +L I+H L
Sbjct: 239 IDGRPKHFYSIYRKMKEQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTL 289
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 290 FKPMPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 349
Query: 402 TGNKLQSISSMDESD 416
I S DE +
Sbjct: 350 G-----RIKSTDEDE 359
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 599 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 658
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 358 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 408
Query: 659 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 409 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 450
>gi|365835926|ref|ZP_09377334.1| GTP diphosphokinase [Hafnia alvei ATCC 51873]
gi|364565046|gb|EHM42783.1| GTP diphosphokinase [Hafnia alvei ATCC 51873]
Length = 747
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 19/174 (10%)
Query: 229 KFLHDLAKSSEAQKKAKVVQDAGIALTSLV-ACEEALEKELLISTSYIPGMEVTLSSRLK 287
++LH E +K AK++ + I + EAL KE+ G++ + R K
Sbjct: 204 RYLH----PDEYKKIAKLLHERRIDREQFIDNFVEALRKEMAKE-----GVKAEIYGRPK 254
Query: 288 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 347
+YSI+ KM++K + +++D RA+R+VV +Q CY+ L IVH + +
Sbjct: 255 HIYSIWRKMQKKALAFDELFDVRAVRIVV---------ERLQDCYAALGIVHTHYRHLPN 305
Query: 348 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAHW YKE
Sbjct: 306 EFDDYVANPKPNGYQSIHTVVLGPRGKTLEIQIRTRQMHEDAELGVAAHWKYKE 359
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 8/148 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ +L +V+ ++EE+FG E+ LV GV + I R + Q
Sbjct: 74 DSMRTALLFPLVEANVIDRETVEEDFGKEITNLVHGVLEMDAI-------RALKATQNDS 126
Query: 72 G-HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G E+ +++R MLL MV+D R V+IKLA+R+ ++R + P + A+E I+ LA
Sbjct: 127 GASEQVDNIRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEEERVLAAKECFNIYAPLA 186
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+ LK ELED CF L P ++K+
Sbjct: 187 NRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|403384230|ref|ZP_10926287.1| GTP pyrophosphokinase [Kurthia sp. JC30]
Length = 730
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 97/167 (58%), Gaps = 15/167 (8%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ LS R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L I
Sbjct: 234 IQAELSGRPKHIYSIYKKMQSQHKQFNEIYDLLAIRVLVD---------SIKDCYAVLGI 284
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT +MH AE+G+AAHW
Sbjct: 285 VHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVIGPYGDPLEVQIRTNEMHNIAEYGVAAHW 344
Query: 398 LYKETGNKLQSISSMDES-----DIEASSSLSKDTDDH-NPLDTDLF 438
YKE N S +D +I S+S D ++ L DLF
Sbjct: 345 AYKEGKNAATEKSDIDSKLTWFREILEFQSVSNDAEEFMESLKFDLF 391
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 89/147 (60%), Gaps = 12/147 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+TV AG LHDVV+D + + E+FG+EVA LV GV++L I ++
Sbjct: 69 ETVSAGFLHDVVEDTEVTRDDLVEQFGEEVAMLVDGVTKLGKIKYKSKKE---------- 118
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R +++ETL I+ LA
Sbjct: 119 --QQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPVEKQRRISKETLEIFAPLAH 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ A+K ELED L PQ + ++
Sbjct: 177 RLGISAIKWELEDTALRYLNPQQYYRI 203
>gi|261381004|ref|ZP_05985577.1| GTP diphosphokinase [Neisseria subflava NJ9703]
gi|284796037|gb|EFC51384.1| GTP diphosphokinase [Neisseria subflava NJ9703]
Length = 737
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V I CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TIPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A IL D+ + E V +LV GV + + Q R + +
Sbjct: 79 DAVAATILSDIGKYVPTWQELVTERCNSTVCELVKGVDEVQKLTQFARVDSLATPEERS- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP--PAKARAVAQETLLIWCSL 129
++A +R MLL MV D RVVLIKLA R ++ + +P P K RAVA+ETL I+ L
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNVPDNPEK-RAVAKETLDIFAPL 194
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+RLG+W LK +LEDL F +P+ +R++
Sbjct: 195 ANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|427418396|ref|ZP_18908579.1| (p)ppGpp synthetase, RelA/SpoT family [Leptolyngbya sp. PCC 7375]
gi|425761109|gb|EKV01962.1| (p)ppGpp synthetase, RelA/SpoT family [Leptolyngbya sp. PCC 7375]
Length = 763
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 85/135 (62%), Gaps = 9/135 (6%)
Query: 280 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 339
V +SSR K LYSI+ KM+R+ H++YD A+R++V K CY L +VH
Sbjct: 258 VEISSRPKHLYSIYRKMQRQKKDFHQIYDIAAVRIIVSTKVE---------CYRALAVVH 308
Query: 340 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 399
+ PI G F DYI PK + YQSLHTAV G G +EVQIRT +MH AE+G+AAHW Y
Sbjct: 309 DQFKPIPGRFKDYIGLPKANRYQSLHTAVIGEQGRPIEVQIRTMEMHHVAEYGIAAHWKY 368
Query: 400 KETGNKLQSISSMDE 414
KETGN +++ DE
Sbjct: 369 KETGNSNTKVNAEDE 383
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 86/146 (58%), Gaps = 12/146 (8%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D S IE FG EV ++V GV++LS + N T
Sbjct: 92 IAAGFLHDVVEDTDVSADEIEAHFGAEVRQMVEGVTKLS----------KFQFNSKT--E 139
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M D RV+++KLADRLHNMRT+ LPP K A ET+ I+ LA+RL
Sbjct: 140 RQAENFRRMFLAMAQDIRVIVVKLADRLHNMRTLQHLPPEKQVQKACETIEIFAPLANRL 199
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMR 159
G+ +K ELEDL F L+ +++++
Sbjct: 200 GIGRMKWELEDLSFKYLEESSYQEIK 225
>gi|332711840|ref|ZP_08431770.1| (p)ppGpp synthetase, RelA/SpoT family [Moorea producens 3L]
gi|332349168|gb|EGJ28778.1| (p)ppGpp synthetase, RelA/SpoT family [Moorea producens 3L]
Length = 754
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 87/138 (63%), Gaps = 9/138 (6%)
Query: 280 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 339
V +SSR K LY I+ KM+R++ G H++YD A+RV+V K + CY L +VH
Sbjct: 251 VDISSRPKHLYGIYQKMQRQNKGFHEIYDIAAMRVIVETK---------EECYRALAVVH 301
Query: 340 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 399
L+ PI G F DYI PKP+ YQSLHT V G +G +EVQIRT +MH AE G+AAHW Y
Sbjct: 302 DLFRPIPGRFKDYIGLPKPNRYQSLHTGVIGFNGRPIEVQIRTLEMHHVAEWGIAAHWKY 361
Query: 400 KETGNKLQSISSMDESDI 417
KETG + + D+ +
Sbjct: 362 KETGGSNTTKFTADDEKL 379
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 90/158 (56%), Gaps = 12/158 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D + IE FG EV LV GV++LS N + R
Sbjct: 85 IAAGFLHDVVEDTEITPEEIESRFGVEVRNLVEGVTKLSKFNFSSKTER----------- 133
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M D RV+++KLADRLHNMRT+ L P K +AQET I+ LA+RL
Sbjct: 134 -QAENFRRMFLAMAADIRVIVVKLADRLHNMRTLEYLKPQKQGQIAQETRDIFAPLANRL 192
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
G+ K ELEDL F L+ +R++++ +A S R +
Sbjct: 193 GIGCFKWELEDLAFKYLERDAYREIQSLVAERRSDREQ 230
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 592 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 651
T+ + + K+ LR +L W++ L+ + N + E V V P+G+
Sbjct: 369 TTKFTADDEKLTWLRQLLEWQKDLKDAQEYME---------NIKDNLFDEDVYVFTPDGD 419
Query: 652 IMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
++ L G+TA D A + VG V VNG+ + + LK+GDIVE+
Sbjct: 420 VVALSRGATAVDFAYRIHTEVGNHCAGVRVNGEWRVLDCPLKNGDIVEI 468
>gi|386359779|ref|YP_006058024.1| RelA/SpoT family (p)ppGpp synthetase [Thermus thermophilus JL-18]
gi|383508806|gb|AFH38238.1| (p)ppGpp synthetase, RelA/SpoT family [Thermus thermophilus JL-18]
Length = 724
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 103/173 (59%), Gaps = 14/173 (8%)
Query: 261 EEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKN 320
+E L ++ L+ S + G EVT R K LYSI+ KM R+ + ++YD A+RV++ K
Sbjct: 225 QETLTRDELLQ-SQLQGFEVT--GRPKHLYSIWKKMEREGKTLEQIYDLLAVRVILDPKP 281
Query: 321 G-TLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSAL 376
T A+ Q CY +L +VH LW PI G DYI PKP+GYQSLHT V +G L
Sbjct: 282 APTRESQALREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIALEGLPL 341
Query: 377 EVQIRTQKMHEYAEHGLAAHWLYK-------ETGNKLQSISSMDESDIEASSS 422
EVQIRT++MH AE+G+AAHWLYK E ++ + S+ E E SSS
Sbjct: 342 EVQIRTREMHRVAEYGIAAHWLYKEGLTDPEEVKRRVSWLKSIQEWQKEFSSS 394
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 96/163 (58%), Gaps = 13/163 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV AG+LHD ++D + +E FG V ++V G +++S + +L L
Sbjct: 65 DTVAAGLLHDTLEDCGVAPEELERRFGPTVRRIVEGETKVSKLYKL-----------ANL 113
Query: 72 GHEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
EE A DLR M + M +D R++++KLADRLHN+RT+ +PP K + +AQETL I+ L
Sbjct: 114 EGEERRAEDLRQMFIAMAEDVRIIIVKLADRLHNLRTLEHMPPEKQKRIAQETLEIYAPL 173
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
A RLG+ LK ELEDL F L P+ F + A + + R R+
Sbjct: 174 AHRLGMGQLKWELEDLSFRYLHPEAFASLSARIQATQEARERL 216
>gi|294141949|ref|YP_003557927.1| GTP pyrophosphokinase [Shewanella violacea DSS12]
gi|293328418|dbj|BAJ03149.1| GTP pyrophosphokinase [Shewanella violacea DSS12]
Length = 734
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 79/117 (67%), Gaps = 9/117 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 RPKHIYSIWKKMEGKDLKFDELFDVRAVRIVT---------DRLQDCYGALGVVHTLWHH 300
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 301 IPREFDDYVANPKPNGYQSIHTIVMGPEGKTVEIQIRTEQMHEDAELGVAAHWKYKE 357
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 82/152 (53%), Gaps = 6/152 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A +L V D S S+EE FG +A LV V ++ I L +IN NQ
Sbjct: 71 IETLQASVLFVVYDAGILSKESLEESFGKRLATLVCSVETMNAIGAL-----KIN-NQSR 124
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ LA
Sbjct: 125 AAEPQIDNIRRMLLAMVEDVRAVVIKLAERICLLREVKNADEETRVLLAREIADIYAPLA 184
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELED+ F L P ++ + L
Sbjct: 185 NRLGIGQLKWELEDISFRYLHPTTYKDIAKQL 216
>gi|317491025|ref|ZP_07949461.1| RelA/SpoT family protein [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920572|gb|EFV41895.1| RelA/SpoT family protein [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 747
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 19/174 (10%)
Query: 229 KFLHDLAKSSEAQKKAKVVQDAGIALTSLV-ACEEALEKELLISTSYIPGMEVTLSSRLK 287
++LH E +K AK++ + I + EAL KE+ G++ + R K
Sbjct: 204 RYLH----PDEYKKIAKLLHERRIDREQFIDNFVEALRKEMAKE-----GVKAEIYGRPK 254
Query: 288 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 347
+YSI+ KM++K + +++D RA+R+VV +Q CY+ L IVH + +
Sbjct: 255 HIYSIWRKMQKKALAFDELFDVRAVRIVV---------ERLQDCYAALGIVHTHYRHLPN 305
Query: 348 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAHW YKE
Sbjct: 306 EFDDYVANPKPNGYQSIHTVVLGPRGKTLEIQIRTRQMHEDAELGVAAHWKYKE 359
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 8/148 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ +L +V+ ++EE+FG E+ LV GV + I R + Q
Sbjct: 74 DSMRTALLFPLVEAKVIDRETVEEDFGKEITNLVHGVLEMDAI-------RALKATQNDS 126
Query: 72 G-HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G E+ +++R MLL MV+D R V+IKLA+R+ ++R + P + A+E I+ LA
Sbjct: 127 GASEQVDNIRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEEERVLAAKECFNIYAPLA 186
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+ LK ELED CF L P ++K+
Sbjct: 187 NRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|260771910|ref|ZP_05880828.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio metschnikovii
CIP 69.14]
gi|260613202|gb|EEX38403.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio metschnikovii
CIP 69.14]
Length = 739
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 89/127 (70%), Gaps = 9/127 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K +YSI+ KM++K++ +++D RA+R++ DK +Q CY+ L IVH
Sbjct: 248 VSGRPKHIYSIWRKMQKKNLAFDELFDVRAVRII-ADK--------LQDCYAALGIVHTK 298
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ + GEFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAHW YKE
Sbjct: 299 YKHLPGEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAHWKYKE 358
Query: 402 TGNKLQS 408
+ +S
Sbjct: 359 GASTARS 365
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 8/152 (5%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA +L + +EE +G E+ KL+ GV ++ I QL N+ QG+
Sbjct: 74 TLVAALLFPIATSGLLDQEELEEHYGKEIIKLIHGVEEMAAIGQL-------NITMQGSE 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+R + P RA A+E I+ LA+
Sbjct: 127 ASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKDQPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ LK E+ED F QP ++++ L+
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLS 218
>gi|242280235|ref|YP_002992364.1| (p)ppGpp synthetase I SpoT/RelA [Desulfovibrio salexigens DSM 2638]
gi|242123129|gb|ACS80825.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfovibrio salexigens DSM
2638]
Length = 723
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 85/123 (69%), Gaps = 9/123 (7%)
Query: 281 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 340
T+ R K +YSI KM+R+++ + +VYD A RV+V +++ CYS+L +VH
Sbjct: 232 TIYGRTKHIYSIHKKMQRQNLSLDQVYDIIAFRVIV---------ESVKDCYSVLGLVHS 282
Query: 341 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 400
+W PI G+F DYI PK + YQSLHT V GP+G +E+QIRT++M + AE+G+AAHW YK
Sbjct: 283 MWKPISGKFKDYISIPKANMYQSLHTTVIGPEGERIEIQIRTEEMQQVAEYGVAAHWQYK 342
Query: 401 ETG 403
E+G
Sbjct: 343 ESG 345
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 92/146 (63%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV AG+LHD V+D ++ I + FG+EVA +V GV+++S ++ +
Sbjct: 65 TVAAGLLHDTVEDTDTTIDEIADLFGEEVADIVDGVTKISMMDF------------ESKA 112
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A ++R M+L M +D RV+++KLADRLHNMRT+ K +AQET+ I+ LA+R
Sbjct: 113 IAKAENIRKMILAMAEDIRVLMVKLADRLHNMRTLDFQKSYKQLLIAQETMDIYSPLANR 172
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LGL+ +K +LEDLC L+P +++ +
Sbjct: 173 LGLYMVKRDLEDLCLYYLKPDVYQDI 198
>gi|339635160|ref|YP_004726801.1| GTP pyrophosphokinase [Weissella koreensis KACC 15510]
gi|338854956|gb|AEJ24122.1| GTP pyrophosphokinase [Weissella koreensis KACC 15510]
Length = 744
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 110/202 (54%), Gaps = 18/202 (8%)
Query: 267 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 326
E+ ++ + V++ R K +YSI+ KM++K ++YD A+RV+V
Sbjct: 224 EIKVTIDNLKLKNVSVYGRPKHIYSIYRKMQKKQKAFEEIYDLLAIRVIVN--------- 274
Query: 327 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 386
+I CY++L +H W P+ G F DYI PK +GYQSLHT+V GP+G LE+QIRT MH
Sbjct: 275 SIGDCYAVLGAIHSHWTPMPGRFKDYIALPKANGYQSLHTSVIGPEGRPLEIQIRTHDMH 334
Query: 387 EYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSL------SKDTDDH-NPLDTDLFQ 439
E AE G+AAHW YKE + + D+ + S+ SKD+ D + +DLF
Sbjct: 335 EVAEFGVAAHWAYKEGKFDGADVQNSDQQQLNMIQSILELQTESKDSGDFMETVKSDLFT 394
Query: 440 K--YSSLKMGHPVIRVEGSNLL 459
Y+ +G V +G+ L
Sbjct: 395 DRVYAFTPLGDVVELTQGAGPL 416
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 87/151 (57%), Gaps = 12/151 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV+AG LHDVV+D L I + FG++VA +V GVS++S I R
Sbjct: 69 DTVIAGYLHDVVEDTPAELEDIVDRFGEDVAAIVDGVSKISKIEYKSDSERL-------- 120
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
A + R +LL M D RV+ +KLADRLHN+RT+ AL PAK + +A ETL I+ LA
Sbjct: 121 ----AENHRKLLLAMSHDIRVIFVKLADRLHNIRTLDALNPAKQKRIAGETLEIYAPLAD 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
RLG+ +K ELED L + + + D+
Sbjct: 177 RLGIMTIKWELEDTSLRYLDYEAYHAIAQDM 207
>gi|452202850|ref|YP_007482983.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalococcoides
mccartyi DCMB5]
gi|452109909|gb|AGG05641.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalococcoides
mccartyi DCMB5]
Length = 728
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 81/132 (61%), Gaps = 12/132 (9%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRR---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 333
G+ V +S R K LYSI+ KM + + +YD ALRV+V D I CY
Sbjct: 238 GLNVEVSGRPKHLYSIYQKMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYH 288
Query: 334 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 393
+ IVH LW PI G FDDYI NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+
Sbjct: 289 AVGIVHSLWHPIPGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGV 348
Query: 394 AAHWLYKETGNK 405
AAHW YK G +
Sbjct: 349 AAHWRYKTAGKE 360
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 98/148 (66%), Gaps = 5/148 (3%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI--NQLLRRHRRINVNQGT 70
T+ A +LHDV +DA SL I+++FG +VAKLV GV++LS + + RR G
Sbjct: 64 TLSAALLHDVPEDANISLEQIDKKFGADVAKLVDGVTKLSKLALGPAIEDARRPG---GN 120
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A +LR ML+ M +D RVV IKLADR HNMRT+ AL P K R++A+ET+ I+ LA
Sbjct: 121 ASLRQAENLRKMLVAMAEDLRVVFIKLADRFHNMRTLQALSPEKRRSIAKETMEIYAPLA 180
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+W LK +LEDL F L P+ +R++
Sbjct: 181 HRLGIWELKWQLEDLAFRYLDPRHYRQV 208
>gi|73747961|ref|YP_307200.1| GTP pyrophosphokinase [Dehalococcoides sp. CBDB1]
gi|289431960|ref|YP_003461833.1| (p)ppGpp synthetase I SpoT/RelA [Dehalococcoides sp. GT]
gi|452204331|ref|YP_007484460.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalococcoides
mccartyi BTF08]
gi|73659677|emb|CAI82284.1| GTP pyrophosphokinase [Dehalococcoides sp. CBDB1]
gi|288945680|gb|ADC73377.1| (p)ppGpp synthetase I, SpoT/RelA [Dehalococcoides sp. GT]
gi|452111387|gb|AGG07118.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalococcoides
mccartyi BTF08]
Length = 728
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 81/132 (61%), Gaps = 12/132 (9%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRR---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 333
G+ V +S R K LYSI+ KM + + +YD ALRV+V D I CY
Sbjct: 238 GLNVEVSGRPKHLYSIYQKMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYH 288
Query: 334 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 393
+ IVH LW PI G FDDYI NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+
Sbjct: 289 AVGIVHSLWHPIPGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGV 348
Query: 394 AAHWLYKETGNK 405
AAHW YK G +
Sbjct: 349 AAHWRYKTAGKE 360
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 98/148 (66%), Gaps = 5/148 (3%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI--NQLLRRHRRINVNQGT 70
T+ A +LHDV +DA SL I+++FG +VAKLV GV++LS + + RR G
Sbjct: 64 TLSAALLHDVPEDANISLEQIDKKFGADVAKLVDGVTKLSKLALGPAIEDARRPG---GN 120
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A +LR ML+ M +D RVV IKLADR HNMRT+ AL P K R++A+ET+ I+ LA
Sbjct: 121 ASLRQAENLRKMLVAMAEDLRVVFIKLADRFHNMRTLQALSPEKRRSIAKETMEIYAPLA 180
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+W LK +LEDL F L P+ +R++
Sbjct: 181 HRLGIWELKWQLEDLAFRYLDPRHYRQV 208
>gi|420161155|ref|ZP_14667926.1| GTP diphosphokinase [Weissella koreensis KCTC 3621]
gi|394745905|gb|EJF34723.1| GTP diphosphokinase [Weissella koreensis KCTC 3621]
Length = 744
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 110/202 (54%), Gaps = 18/202 (8%)
Query: 267 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 326
E+ ++ + V++ R K +YSI+ KM++K ++YD A+RV+V
Sbjct: 224 EIKVTIDNLKLKNVSVYGRPKHIYSIYRKMQKKQKAFEEIYDLLAIRVIVN--------- 274
Query: 327 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 386
+I CY++L +H W P+ G F DYI PK +GYQSLHT+V GP+G LE+QIRT MH
Sbjct: 275 SIGDCYAVLGAIHSHWTPMPGRFKDYIALPKANGYQSLHTSVIGPEGRPLEIQIRTHDMH 334
Query: 387 EYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSL------SKDTDDH-NPLDTDLFQ 439
E AE G+AAHW YKE + + D+ + S+ SKD+ D + +DLF
Sbjct: 335 EVAEFGVAAHWAYKEGKFDGADVQNSDQQQLNMIQSILELQTESKDSGDFMETVKSDLFT 394
Query: 440 K--YSSLKMGHPVIRVEGSNLL 459
Y+ +G V +G+ L
Sbjct: 395 DRVYAFTPLGDVVELTQGAGPL 416
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 87/151 (57%), Gaps = 12/151 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV+AG LHDVV+D L I E FG++VA +V GVS++S I R
Sbjct: 69 DTVIAGYLHDVVEDTPAELEDIVERFGEDVAAIVDGVSKISKIEYKSDSERL-------- 120
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
A + R +LL M D RV+ +KLADRLHN+RT+ AL PAK + +A ETL I+ LA
Sbjct: 121 ----AENHRKLLLAMSHDIRVIFVKLADRLHNIRTLDALNPAKQKRIAGETLEIYAPLAD 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
RLG+ +K ELED L + + + D+
Sbjct: 177 RLGIMTIKWELEDTSLRYLDYEAYHAIAQDM 207
>gi|339058187|ref|ZP_08648709.1| GTP pyrophosphokinase2C (p)ppGpp synthetase I [gamma
proteobacterium IMCC2047]
gi|330720606|gb|EGG98868.1| GTP pyrophosphokinase2C (p)ppGpp synthetase I [gamma
proteobacterium IMCC2047]
Length = 748
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 84/131 (64%), Gaps = 9/131 (6%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ ++ R K +YSI KM K + +VYDA A+RV+V P ++ CY+ L +
Sbjct: 259 IDAVVTGRAKHIYSIARKMDNKHIDFDQVYDASAVRVLV---------PDVKDCYATLGV 309
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW + EFDDYI PKP+GY+SLHTAV GP+G A+EVQIRT MHE AE G+ +HW
Sbjct: 310 VHSLWRLVPNEFDDYIAIPKPNGYRSLHTAVIGPEGKAMEVQIRTHAMHEEAEFGVCSHW 369
Query: 398 LYKETGNKLQS 408
YK K +S
Sbjct: 370 QYKGADRKGKS 380
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 110/215 (51%), Gaps = 14/215 (6%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++VAGIL V + SL ++ +FG+ VA L+ GV ++ I + ++
Sbjct: 86 DSLVAGILCRAVREERLSLKTVAAKFGETVANLIDGVQQMDAITAAQESLDKTSLG---- 141
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
G ++ ++R ML+ MVDD RV LIKLA+R +R I P R +A++ I+ LA
Sbjct: 142 GQDQVENVRKMLVSMVDDVRVALIKLAERTWAIRAIKNEPDDFKRRIAKQVSEIYAPLAH 201
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIVSSPPLDE 189
RLG+ +K ELED+ F L P+ + A +A + R +R Y R+ ++ DE
Sbjct: 202 RLGIGYIKWELEDIAFRYLSPERY----AAIAKLLDGRRLDREEYISRVINLLEGKLRDE 257
Query: 190 RTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSD 223
+ D T +H+ S+ + + + FD + D
Sbjct: 258 QI---DAVVTGRAKHIYSIARKMDNKHIDFDQVYD 289
>gi|241759907|ref|ZP_04758007.1| GTP pyrophosphokinase [Neisseria flavescens SK114]
gi|241319915|gb|EER56311.1| GTP pyrophosphokinase [Neisseria flavescens SK114]
Length = 737
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V I CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TIPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 80/149 (53%), Gaps = 6/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A IL D+ + E V +LV GV + + Q R +
Sbjct: 79 DAVAATILSDIGKYVPTWHELVTERCNSTVCELVKGVDEVQKLTQFARVDSLATPEERG- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP--PAKARAVAQETLLIWCSL 129
++A +R MLL MV D RVVLIKLA R ++ + +P P K RAVA+ETL I+ L
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNVPDNPEK-RAVAKETLDIFAPL 194
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+RLG+W LK +LEDL F +P+ +R++
Sbjct: 195 ANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|418288904|ref|ZP_12901320.1| GTP diphosphokinase [Neisseria meningitidis NM233]
gi|418291162|ref|ZP_12903210.1| GTP diphosphokinase [Neisseria meningitidis NM220]
gi|372200342|gb|EHP14431.1| GTP diphosphokinase [Neisseria meningitidis NM220]
gi|372200758|gb|EHP14784.1| GTP diphosphokinase [Neisseria meningitidis NM233]
Length = 737
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V I CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TIPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|407803935|ref|ZP_11150766.1| GTP pyrophosphokinase [Alcanivorax sp. W11-5]
gi|407022185|gb|EKE33941.1| GTP pyrophosphokinase [Alcanivorax sp. W11-5]
Length = 747
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 279 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 338
+V + R K +YSI+ KM++K + ++VYD RA+R++V P ++ CY+ L +V
Sbjct: 258 DVQVDGRAKHIYSIWRKMQKKHLDFYEVYDVRAVRILV---------PEVRDCYAALGVV 308
Query: 339 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 398
H LW + EFDDYI PK +GYQSLHTAV GPD LEVQIRT +MH+ AE G+ AHW
Sbjct: 309 HSLWQHVPKEFDDYIATPKENGYQSLHTAVVGPDRKMLEVQIRTYEMHDDAELGVCAHWH 368
Query: 399 YKETGNK 405
YKE +
Sbjct: 369 YKEGARR 375
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 85/145 (58%), Gaps = 7/145 (4%)
Query: 16 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 75
A +L+ V + SL +E EFG+ +A++V GV R++ I+ +L R+ LG +E
Sbjct: 86 AAVLYRAVREGHLSLLEVEREFGETIARMVEGVLRMAAISAVLNPTRK-----PVLGQQE 140
Query: 76 A--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+++R ML+ MVDD RV L+KLA+R +R + + V++E I+ LA RL
Sbjct: 141 GQLDNVRKMLVAMVDDVRVALLKLAERTVIIRALKDGDEERRLKVSREIFDIYAPLAHRL 200
Query: 134 GLWALKAELEDLCFAVLQPQIFRKM 158
G+ LK ELEDL F LQP ++K+
Sbjct: 201 GVGQLKWELEDLSFRYLQPGAYKKV 225
>gi|344343209|ref|ZP_08774078.1| (p)ppGpp synthetase I, SpoT/RelA [Marichromatium purpuratum 984]
gi|343805140|gb|EGV23037.1| (p)ppGpp synthetase I, SpoT/RelA [Marichromatium purpuratum 984]
Length = 738
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 83/126 (65%), Gaps = 9/126 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ ++ R K +YSI+ KMRRK V I +++D RA+R++V ++ CY+ L
Sbjct: 249 GISAEITGRPKHIYSIWKKMRRKGVDIEEIFDLRAVRIMV---------ESVADCYAALG 299
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI PK + YQSLHTAV GP +LEVQIRT +MH +AE G+AAH
Sbjct: 300 IVHGLWRHIPKEFDDYIATPKGNMYQSLHTAVIGPGDKSLEVQIRTYEMHRHAEFGVAAH 359
Query: 397 WLYKET 402
W YKE
Sbjct: 360 WAYKEA 365
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 89/147 (60%), Gaps = 6/147 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+VA +L+ ++ SL IE+ FG VA++V +SR+ + + I +
Sbjct: 79 ETLVAALLNGSLEAQATSLADIEQRFGANVARMVDDLSRIGQLANV----DAIIAAKDQS 134
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
HEE +LR +LLG+ +D RVVL+ LA+R+H MR I L + +A++T ++ LA+
Sbjct: 135 QHEE--NLRRLLLGIAEDVRVVLVVLAERVHLMRAIKDLEIRRRTRIARDTERVYAPLAN 192
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+W LK ELEDL LQP+ ++++
Sbjct: 193 RLGVWQLKWELEDLSLRYLQPEEYKRI 219
>gi|147668657|ref|YP_001213475.1| (p)ppGpp synthetase I SpoT/RelA [Dehalococcoides sp. BAV1]
gi|146269605|gb|ABQ16597.1| (p)ppGpp synthetase I, SpoT/RelA [Dehalococcoides sp. BAV1]
Length = 728
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 81/132 (61%), Gaps = 12/132 (9%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRR---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 333
G+ V +S R K LYSI+ KM + + +YD ALRV+V D I CY
Sbjct: 238 GLNVEVSGRPKHLYSIYQKMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYH 288
Query: 334 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 393
+ IVH LW PI G FDDYI NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+
Sbjct: 289 AVGIVHSLWHPIPGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGV 348
Query: 394 AAHWLYKETGNK 405
AAHW YK G +
Sbjct: 349 AAHWRYKTAGKE 360
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 98/148 (66%), Gaps = 5/148 (3%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYI--NQLLRRHRRINVNQGT 70
T+ A +LHDV +DA SL I+++FG +VAKLV GV++LS + + RR G
Sbjct: 64 TLSAALLHDVPEDANISLEQIDKKFGADVAKLVDGVTKLSKLALGPAIEDARRPG---GN 120
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A +LR ML+ M +D RVV IKLADR HNMRT+ AL P K R++A+ET+ I+ LA
Sbjct: 121 ASLRQAENLRKMLVAMAEDLRVVFIKLADRFHNMRTLQALSPEKRRSIAKETMEIYAPLA 180
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+W LK +LEDL F L P+ +R++
Sbjct: 181 HRLGIWELKWQLEDLAFRYLDPRHYRQV 208
>gi|403237624|ref|ZP_10916210.1| GTP pyrophosphokinase [Bacillus sp. 10403023]
Length = 729
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 89/138 (64%), Gaps = 10/138 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 SIKADISGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRIVVN---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTVEMHQIAEYGIAAH 343
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE G ++ SS +E
Sbjct: 344 WAYKE-GKQVNQQSSFEE 360
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 83/146 (56%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ G LHDVV+D +L I + F EVA LV GV++L I +
Sbjct: 70 TIAGGFLHDVVEDTNVTLQEISDAFSSEVAMLVDGVTKLGKIKYKSKEE----------- 118
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LPP K R ++ ETL I+ LA R
Sbjct: 119 -QQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPPEKQRRISNETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISRIKWELEDTALRYLNPQQYYRI 203
>gi|303232508|ref|ZP_07319195.1| putative GTP diphosphokinase [Atopobium vaginae PB189-T1-4]
gi|302481392|gb|EFL44465.1| putative GTP diphosphokinase [Atopobium vaginae PB189-T1-4]
Length = 829
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 93/147 (63%), Gaps = 17/147 (11%)
Query: 277 GME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV---VGDKNGTLHGPAIQCCY 332
GM+ V++ R K L+SI+ KM RKD + +YD A+RV+ VGD CY
Sbjct: 300 GMQGVSIQGRPKHLWSIYQKMIRKDKNFNDIYDLIAIRVLTKTVGD------------CY 347
Query: 333 SLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHG 392
S L VH +W P+ G F DYI PKP+GY+SLHT V G D +E+QIRT +MH AE+G
Sbjct: 348 SALGSVHTIWHPLPGRFKDYIAMPKPNGYRSLHTTVIGIDARPIEIQIRTYEMHSQAEYG 407
Query: 393 LAAHWLYKETGNKLQSISSMDESDIEA 419
+AAHWLYK++G+ Q S DE +I++
Sbjct: 408 IAAHWLYKKSGSS-QGKMSRDEKEIDS 433
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 89/147 (60%), Gaps = 12/147 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ + ILHD V+D +L IEE FG V +LV GV++L+ ++ ++
Sbjct: 136 DSICSAILHDTVEDTSATLDDIEERFGYTVRELVDGVTKLT------------SIEVSSM 183
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++A +LR M L M D RV++IKLADRLHNMRT+ ALP + A+ET ++ LA
Sbjct: 184 DEKQALNLRKMFLAMSKDIRVIIIKLADRLHNMRTLAALPENRRTFKAKETRDVYAPLAD 243
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ ++K ELEDL F L ++++
Sbjct: 244 RLGISSIKWELEDLAFLYLDHDEYQRI 270
>gi|149183963|ref|ZP_01862340.1| GTP pyrophosphokinase [Bacillus sp. SG-1]
gi|148848326|gb|EDL62599.1| GTP pyrophosphokinase [Bacillus sp. SG-1]
Length = 507
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 83/127 (65%), Gaps = 9/127 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I
Sbjct: 11 IEADISGRPKHIYSIYRKMALQNKQFNEIYDLLAVRIVVD---------SIKDCYAVLGI 61
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH+ AE+G+AAHW
Sbjct: 62 IHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTTEMHQIAEYGVAAHW 121
Query: 398 LYKETGN 404
YKE N
Sbjct: 122 AYKEGQN 128
>gi|304386781|ref|ZP_07369048.1| GTP diphosphokinase [Neisseria meningitidis ATCC 13091]
gi|304339131|gb|EFM05218.1| GTP diphosphokinase [Neisseria meningitidis ATCC 13091]
Length = 773
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V I CY+ L IVH L
Sbjct: 294 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TIPECYTTLGIVHSL 344
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 345 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 404
Query: 402 TG 403
G
Sbjct: 405 GG 406
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 115 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 173
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
+A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 174 --RQAEIMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 231
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 232 NRLGVWQLKWQLEDLGFRHQEPEKYREI 259
>gi|349610831|ref|ZP_08890155.1| hypothetical protein HMPREF1028_02130 [Neisseria sp. GT4A_CT1]
gi|348615549|gb|EGY65064.1| hypothetical protein HMPREF1028_02130 [Neisseria sp. GT4A_CT1]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATSEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R M+ + +P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTMQFLSNIPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|410637830|ref|ZP_11348400.1| GTP pyrophosphokinase [Glaciecola lipolytica E3]
gi|410142516|dbj|GAC15605.1| GTP pyrophosphokinase [Glaciecola lipolytica E3]
Length = 718
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 83/124 (66%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ V + R K +YSI+ KM++K + ++YD RA+R++ +Q CYS L I
Sbjct: 231 INVKVYGRPKHIYSIWKKMQKKHLSFDQLYDIRAVRII---------ADRLQDCYSALGI 281
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH L+ I EFDDYI PKP+GYQS+HT V GP G ++E+QIRTQ+MH+ AE G+AAHW
Sbjct: 282 VHSLFKHIPNEFDDYIATPKPNGYQSIHTVVVGPQGRSVEIQIRTQQMHQDAELGIAAHW 341
Query: 398 LYKE 401
YKE
Sbjct: 342 KYKE 345
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 10/136 (7%)
Query: 27 CESLG----SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVM 82
CE G IEEEFG + L++GV R+ I L H R N + + +++R M
Sbjct: 71 CELHGLDDEQIEEEFGKGIRNLISGVRRMDAIKTL---HSRSNKKADEV---QIDNIRRM 124
Query: 83 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 142
LL MV+D R VLIKLA+R+ ++ + VA+E I+ LA+RLG+ LK E+
Sbjct: 125 LLAMVEDVRTVLIKLAERICTLQKMKKADEETRVIVARECSTIYAPLANRLGIGQLKWEI 184
Query: 143 EDLCFAVLQPQIFRKM 158
EDL F L P+ ++++
Sbjct: 185 EDLSFRYLHPEKYKQI 200
>gi|373857672|ref|ZP_09600413.1| RelA/SpoT family protein [Bacillus sp. 1NLA3E]
gi|372452804|gb|EHP26274.1| RelA/SpoT family protein [Bacillus sp. 1NLA3E]
Length = 731
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 86/136 (63%), Gaps = 10/136 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ LS R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L I
Sbjct: 234 IKAELSGRPKHIYSIYRKMALQNKQFNEIYDLLAVRIIVN---------SIKDCYAVLGI 284
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE G+AAHW
Sbjct: 285 IHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTSEMHEIAEFGIAAHW 344
Query: 398 LYKETGNKLQSISSMD 413
YKE G ISS +
Sbjct: 345 AYKE-GKSASDISSYE 359
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 86/147 (58%), Gaps = 12/147 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+TV AG LHDVV+D +L I+ F DEVA LV GV++L I + H
Sbjct: 69 ETVAAGFLHDVVEDTSVTLEDIKTAFNDEVAMLVDGVTKLGKIK--YKSHE--------- 117
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA
Sbjct: 118 -EQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPFEKQRRISNETLEIFAPLAH 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELED L PQ + ++
Sbjct: 177 RLGISKVKWELEDTALRYLNPQQYYRI 203
>gi|292900404|ref|YP_003539773.1| GTP pyrophosphokinase [Erwinia amylovora ATCC 49946]
gi|428784152|ref|ZP_19001644.1| GTP pyrophosphokinase [Erwinia amylovora ACW56400]
gi|291200252|emb|CBJ47380.1| GTP pyrophosphokinase [Erwinia amylovora ATCC 49946]
gi|312171322|emb|CBX79581.1| GTP pyrophosphokinase [Erwinia amylovora ATCC BAA-2158]
gi|426277291|gb|EKV55017.1| GTP pyrophosphokinase [Erwinia amylovora ACW56400]
Length = 744
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAIRIV---------AERLQDCYGALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTLYRHLPNEFDDYVANPKPNGYQSIHTVVLGPQGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKETG 403
W YKE G
Sbjct: 355 WKYKEGG 361
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +L + + S +E++FG + LV GV + I QL H ++
Sbjct: 74 ETLSAALLFPLANAGVVSEHVLEQQFGKAIVSLVHGVRDMDAIRQLKATH------NDSM 127
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E+ +++R MLL MV+D R V+IKLA+R+ ++R + P + A+E I+ LA+
Sbjct: 128 ASEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLAN 187
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ LK ELED CF L P ++++
Sbjct: 188 RLGIGQLKWELEDFCFRYLHPDEYKRI 214
>gi|389795564|ref|ZP_10198684.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter fulvus Jip2]
gi|388430596|gb|EIL87745.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter fulvus Jip2]
Length = 714
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 92/157 (58%), Gaps = 16/157 (10%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ L+ R K +YSI+ KM+RK + +YD RA+RV+V ++ CY+ L
Sbjct: 224 GIHAELAGRPKHIYSIWKKMQRKALEFSDLYDIRAVRVLVD---------SVSDCYAALG 274
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH W + GEFDDYI PK +GYQSLHTAV GP G LEVQIRT MH E G+AAH
Sbjct: 275 VVHARWPHLPGEFDDYIARPKGNGYQSLHTAVLGPAGKTLEVQIRTHAMHRANELGVAAH 334
Query: 397 WLYKETGN-------KLQSISSMDESDIEASSSLSKD 426
W YKE G+ K+ + + E+ E S L+ D
Sbjct: 335 WRYKEGGSADAEFEAKIAWMRKLLEARGEDDSKLAAD 371
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 35 EEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVL 94
E EV +LVAG + L + R A LR +LL ++ D RVV
Sbjct: 79 ESLPAEVQRLVAGQQAAEQVWALHAQKR--------TPERAAEGLRRLLLAIIRDLRVVF 130
Query: 95 IKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQI 154
I LA +L MR A P +A A+A+ T I LA+RLG+W LK ELEDL F LQP
Sbjct: 131 ILLARQLARMRAAVAWPAEEAAALARLTRDIHAPLANRLGIWQLKWELEDLAFRYLQPDT 190
Query: 155 FRKM 158
+R++
Sbjct: 191 YRRI 194
>gi|419796195|ref|ZP_14321755.1| RelA/SpoT family protein [Neisseria sicca VK64]
gi|385699737|gb|EIG30014.1| RelA/SpoT family protein [Neisseria sicca VK64]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATSEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R M+ + +P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTMQFLSNIPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|255066124|ref|ZP_05317979.1| GTP diphosphokinase [Neisseria sicca ATCC 29256]
gi|255049669|gb|EET45133.1| GTP diphosphokinase [Neisseria sicca ATCC 29256]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATSEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R M+ + +P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTMQFLSEVPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|225076079|ref|ZP_03719278.1| hypothetical protein NEIFLAOT_01111 [Neisseria flavescens
NRL30031/H210]
gi|224952578|gb|EEG33787.1| hypothetical protein NEIFLAOT_01111 [Neisseria flavescens
NRL30031/H210]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 80/123 (65%), Gaps = 9/123 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TGN 404
G
Sbjct: 369 GGK 371
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 80/149 (53%), Gaps = 6/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A IL D+ + E VA+LV GV + + Q R +
Sbjct: 79 DAVAATILSDIGKYVPTWHELVSERCNSTVAELVKGVDEVQKLTQFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP--PAKARAVAQETLLIWCSL 129
+A +R MLL MV D RVVLIKLA R ++ + +P P K RAVA+ETL I+ L
Sbjct: 138 --RQAEIMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNVPDNPEK-RAVAKETLDIFAPL 194
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+RLG+W LK +LEDL F +P+ +R++
Sbjct: 195 ANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|292487221|ref|YP_003530093.1| GTP pyrophosphokinase [Erwinia amylovora CFBP1430]
gi|291552640|emb|CBA19685.1| GTP pyrophosphokinase [Erwinia amylovora CFBP1430]
Length = 749
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 249 GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAIRIV---------AERLQDCYGALG 299
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 300 IVHTLYRHLPNEFDDYVANPKPNGYQSIHTVVLGPQGKTVEIQIRTRQMHEDAELGVAAH 359
Query: 397 WLYKETG 403
W YKE G
Sbjct: 360 WKYKEGG 366
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +L + + S +E++FG + LV GV + I QL H ++
Sbjct: 79 ETLSAALLFPLANAGVVSEHVLEQQFGKAIVSLVHGVRDMDAIRQLKATH------NDSM 132
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E+ +++R MLL MV+D R V+IKLA+R+ ++R + P + A+E I+ LA+
Sbjct: 133 ASEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLAN 192
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ LK ELED CF L P ++++
Sbjct: 193 RLGIGQLKWELEDFCFRYLHPDEYKRI 219
>gi|428313851|ref|YP_007124828.1| RelA/SpoT family (p)ppGpp synthetase [Microcoleus sp. PCC 7113]
gi|428255463|gb|AFZ21422.1| (p)ppGpp synthetase, RelA/SpoT family [Microcoleus sp. PCC 7113]
Length = 751
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 85/134 (63%), Gaps = 10/134 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K LY I+ KM+R+ G H++YD A+R+++ K + CY L IVH
Sbjct: 251 ISGRPKHLYGIYQKMQRQQKGFHEIYDLAAMRLILQTK---------EDCYRALAIVHDA 301
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ PI G F DYI PKP+ YQSLHT V GP G +EVQIRT +MH AE+G+AAHW YKE
Sbjct: 302 FRPIPGRFKDYIGLPKPNRYQSLHTGVMGPSGRPIEVQIRTLEMHHIAEYGIAAHWKYKE 361
Query: 402 TGNKLQS-ISSMDE 414
+G + IS+ DE
Sbjct: 362 SGGSSNNRISAEDE 375
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 94/156 (60%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D + IE FG EV +LV GV++LS N + R
Sbjct: 83 IAAGFLHDVVEDTDVTPEEIESRFGVEVRRLVEGVTKLSKFNFSSKTER----------- 131
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M D RV+++KLADRLHNMRT+ L P K R+++QET I+ LA+RL
Sbjct: 132 -QAENFRRMFLAMAADIRVIVVKLADRLHNMRTLEHLNPQKQRSISQETREIFAPLANRL 190
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G+ +K ELEDL F L+P+ +R+M+ +A + R
Sbjct: 191 GIGRVKWELEDLAFKYLEPESYRQMQQLVAERRTDR 226
>gi|421559753|ref|ZP_16005622.1| GTP pyrophosphokinase [Neisseria meningitidis 92045]
gi|402334752|gb|EJU70031.1| GTP pyrophosphokinase [Neisseria meningitidis 92045]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|260898313|ref|ZP_05906809.1| GTP diphosphokinase [Vibrio parahaemolyticus Peru-466]
gi|308085243|gb|EFO34938.1| GTP diphosphokinase [Vibrio parahaemolyticus Peru-466]
Length = 377
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 92/138 (66%), Gaps = 12/138 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE+ + S S DE
Sbjct: 354 WKYKESAS---SRSGYDE 368
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V + +EE++ E+ KL+ GV ++ I QL NV +G+
Sbjct: 74 TLVAAQLFPLVSSGAFNRELLEEKYSKEIIKLIDGVEEMAAIGQL-------NVTMEGSA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ LA R+ + I V + +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLAE-----RRIVREQYIKDFVEDLSQEMKA 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ + +H+ S+ + + + + FD L D R
Sbjct: 242 CGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|261364097|ref|ZP_05976980.1| GTP diphosphokinase [Neisseria mucosa ATCC 25996]
gi|288567664|gb|EFC89224.1| GTP diphosphokinase [Neisseria mucosa ATCC 25996]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R M+ + +P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTMQFLSEVPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|156741205|ref|YP_001431334.1| (p)ppGpp synthetase I SpoT/RelA [Roseiflexus castenholzii DSM
13941]
gi|156232533|gb|ABU57316.1| (p)ppGpp synthetase I, SpoT/RelA [Roseiflexus castenholzii DSM
13941]
Length = 771
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 98/176 (55%), Gaps = 20/176 (11%)
Query: 235 AKSSEAQKKAKVVQDAGIALTSLVA--CEEALEKELLISTSYIPGMEVTLSSRLKSLYSI 292
AK E ++ + +DA L V + LEKE G++ ++ R K +YSI
Sbjct: 244 AKYQEISRQLALRRDARERLIHRVIQRLRQVLEKE---------GIKADITGRPKHIYSI 294
Query: 293 FSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDY 352
+ KM RK V + ++YD A+RV+V + CY +L +VH W P+ GEFDDY
Sbjct: 295 YRKMERKGVSLDQIYDQLAVRVIVD---------TVADCYRVLGLVHATWPPVPGEFDDY 345
Query: 353 IVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS 408
I PK S YQSLHT V P G E+QIRT +MHE AE G+AAHW YKE ++ +
Sbjct: 346 IAMPKESMYQSLHTTVLIPGGQPCEIQIRTHEMHEIAERGIAAHWRYKEGFGRIDA 401
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 95/160 (59%), Gaps = 12/160 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+V A +LHDV++D + + FG E+A LV GV++LS + R ++ GT
Sbjct: 116 SVAAALLHDVLEDTLVTKEQLIALFGAEIANLVDGVTKLSALEARTREEAQV----GTY- 170
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
R M + M DDPRVVL+KLADRLHNMRTI +L + + +A+ETL I+ LA R
Sbjct: 171 -------RKMFIAMADDPRVVLVKLADRLHNMRTISSLSEERQKRMARETLEIYAPLAHR 223
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
LG+W +K ELED FAVL P ++++ LA R R+
Sbjct: 224 LGIWQIKWELEDRAFAVLNPAKYQEISRQLALRRDARERL 263
>gi|421543008|ref|ZP_15989109.1| GTP pyrophosphokinase [Neisseria meningitidis NM255]
gi|402316087|gb|EJU51640.1| GTP pyrophosphokinase [Neisseria meningitidis NM255]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|340363908|ref|ZP_08686219.1| GTP diphosphokinase [Neisseria macacae ATCC 33926]
gi|339884612|gb|EGQ74382.1| GTP diphosphokinase [Neisseria macacae ATCC 33926]
Length = 779
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 80/123 (65%), Gaps = 9/123 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 300 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 350
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 351 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 410
Query: 402 TGN 404
G
Sbjct: 411 GGK 413
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+V + + E VA+LV GV + + R +
Sbjct: 121 DAVAATLLADIVRFVPDWRELLTERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 179
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP--PAKARAVAQETLLIWCSL 129
++A +R MLL MV D RVVLIKLA R M+ + +P P K RAVA+ETL I+ L
Sbjct: 180 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTMQFLSNIPDSPEK-RAVAKETLDIFAPL 236
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+RLG+W LK +LEDL F +P+ +R++
Sbjct: 237 ANRLGVWQLKWQLEDLGFRHQEPEKYREI 265
>gi|344996822|ref|YP_004799165.1| (p)ppGpp synthetase I SpoT/RelA [Caldicellulosiruptor lactoaceticus
6A]
gi|343965041|gb|AEM74188.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor
lactoaceticus 6A]
Length = 726
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 14/173 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ ++VAG+LHDVV+D SL +E EFG E+A+LV GV++L + + R
Sbjct: 68 IASIVAGLLHDVVEDTSASLEDVEREFGKEIAELVDGVTKLGKLEFTSKLER-------- 119
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A + R ML+ M D RV+LIKLADRLHNMRT+ LPP K R AQET+ I+ LA
Sbjct: 120 ----QAENYRKMLIAMAKDIRVILIKLADRLHNMRTLKYLPPEKQRQKAQETIDIYAPLA 175
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 183
RLG+ +K ELEDL L P+ + + +A R Y ++I +++S
Sbjct: 176 HRLGISKIKWELEDLSLRYLDPEGYYDLVEKIAKKRVEREE--YIKKIISLIS 226
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 81/135 (60%), Gaps = 14/135 (10%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+ R K YSI+ KM+ + + ++YD A+R++V +++ CY +L I+H L
Sbjct: 239 IDGRPKHFYSIYRKMKEQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTL 289
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 290 FKPMPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 349
Query: 402 TGNKLQSISSMDESD 416
I S DE +
Sbjct: 350 G-----RIKSTDEDE 359
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 599 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 658
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 358 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 408
Query: 659 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 409 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 450
>gi|312792967|ref|YP_004025890.1| (p)ppgpp synthetase i, spot/rela [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180107|gb|ADQ40277.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 726
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 14/173 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ ++VAG+LHDVV+D SL +E EFG E+A+LV GV++L + + R
Sbjct: 68 IASIVAGLLHDVVEDTSASLEDVEREFGKEIAELVDGVTKLGKLEFTSKLER-------- 119
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A + R ML+ M D RV+LIKLADRLHNMRT+ LPP K R AQET+ I+ LA
Sbjct: 120 ----QAENYRKMLIAMAKDIRVILIKLADRLHNMRTLKYLPPEKQRQKAQETIDIYAPLA 175
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 183
RLG+ +K ELEDL L P+ + + +A R Y ++I +++S
Sbjct: 176 HRLGISKIKWELEDLSLRYLDPEGYYDLVEKIAKKRVEREE--YIKKIISLIS 226
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 81/135 (60%), Gaps = 14/135 (10%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+ R K YSI+ KM+ + + ++YD A+R++V +++ CY +L I+H L
Sbjct: 239 IDGRPKHFYSIYRKMKEQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTL 289
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 290 FKPMPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 349
Query: 402 TGNKLQSISSMDESD 416
I S DE +
Sbjct: 350 G-----RIKSTDEDE 359
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 599 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 658
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 358 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 408
Query: 659 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 409 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 450
>gi|433474076|ref|ZP_20431434.1| relA/SpoT family protein [Neisseria meningitidis 97021]
gi|433482578|ref|ZP_20439834.1| relA/SpoT family protein [Neisseria meningitidis 2006087]
gi|433484504|ref|ZP_20441725.1| relA/SpoT family protein [Neisseria meningitidis 2002038]
gi|433486472|ref|ZP_20443668.1| relA/SpoT family protein [Neisseria meningitidis 97014]
gi|432208608|gb|ELK64585.1| relA/SpoT family protein [Neisseria meningitidis 97021]
gi|432214776|gb|ELK70671.1| relA/SpoT family protein [Neisseria meningitidis 2006087]
gi|432219898|gb|ELK75729.1| relA/SpoT family protein [Neisseria meningitidis 2002038]
gi|432222285|gb|ELK78084.1| relA/SpoT family protein [Neisseria meningitidis 97014]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|421555424|ref|ZP_16001357.1| GTP pyrophosphokinase [Neisseria meningitidis 98008]
gi|402330284|gb|EJU65632.1| GTP pyrophosphokinase [Neisseria meningitidis 98008]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|359786287|ref|ZP_09289423.1| GTP pyrophosphokinase [Halomonas sp. GFAJ-1]
gi|359296401|gb|EHK60653.1| GTP pyrophosphokinase [Halomonas sp. GFAJ-1]
Length = 758
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 79/119 (66%), Gaps = 9/119 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K +YSI+ KM+RK + +V+D RA+R++V P + CY++L IVH
Sbjct: 259 VSGRAKHIYSIWRKMKRKRIDFSQVHDVRAVRILV---------PEVTDCYTVLGIVHSC 309
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 400
W + EFDDYI NPK +GYQSLHTAV GPD +E+QIRT MH+ AE G+ AHW YK
Sbjct: 310 WHHVPNEFDDYIANPKKNGYQSLHTAVMGPDNKVIEIQIRTFAMHDEAELGVCAHWRYK 368
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 84/159 (52%), Gaps = 6/159 (3%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ A +L+ V + S+ ++ + FG EVA+L+ GV +++ I+ L N
Sbjct: 84 TLEAAVLYRAVREGLLSIDAVTKRFGSEVAQLIDGVLQMAAISYPL------TPNHAMGQ 137
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
H + +LR ML+ MV D RV LIK+A+R +R + P K VA+E I+ LA R
Sbjct: 138 HNQQENLRKMLVNMVGDVRVALIKIAERTCALRQVKDAPREKCLQVAREVADIYAPLAHR 197
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
LG+ +K ELEDL F L ++ + LA R+R
Sbjct: 198 LGIGQIKWELEDLSFRYLHEDDYKAIAKLLAEKRLDRDR 236
>gi|302872388|ref|YP_003841024.1| (p)ppGpp synthetase I SpoT/RelA [Caldicellulosiruptor obsidiansis
OB47]
gi|302575247|gb|ADL43038.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor obsidiansis
OB47]
Length = 722
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 101/173 (58%), Gaps = 14/173 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ ++VAG+LHDVV+D SL IE EFG E+A+LV GV++L + + R
Sbjct: 64 IASIVAGLLHDVVEDTSASLEDIEREFGKEIAELVDGVTKLGKLEFTSKLER-------- 115
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A + R ML+ M D RV+LIKLADRLHNMRT+ LPP K R AQET+ I+ L
Sbjct: 116 ----QAENYRKMLIAMAKDIRVILIKLADRLHNMRTLKYLPPEKQRQKAQETIDIYAPLV 171
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 183
RLG+ +K ELEDL L P+ + + +A R Y +RI +++S
Sbjct: 172 HRLGISKIKWELEDLSLRYLDPEGYYDLVEKIAKKRVEREE--YIKRIISLIS 222
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 81/135 (60%), Gaps = 14/135 (10%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+ R K YSI+ KM+ + + ++YD A+R++V +++ CY +L I+H L
Sbjct: 235 IDGRPKHFYSIYRKMKEQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTL 285
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 286 FKPMPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 345
Query: 402 TGNKLQSISSMDESD 416
I S DE +
Sbjct: 346 G-----RIKSTDEDE 355
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 599 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 658
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 354 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVINLPQG 404
Query: 659 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 405 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 446
>gi|433522508|ref|ZP_20479192.1| relA/SpoT family protein [Neisseria meningitidis 61103]
gi|432258117|gb|ELL13408.1| relA/SpoT family protein [Neisseria meningitidis 61103]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 81/122 (66%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+++R K +YSI+ KM +K + ++D RA+R+++ + CY+ L IVH L
Sbjct: 258 VAARPKHIYSIYKKMVKKKLSFDGLFDIRAVRILID---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 80/149 (53%), Gaps = 6/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP--PAKARAVAQETLLIWCSL 129
++A +R MLL MV D RVVLIKLA R ++ + P P K RAVA+ETL I+ L
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEK-RAVAKETLDIFAPL 194
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+RLG+W LK +LEDL F +P+ +R++
Sbjct: 195 ANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|385338570|ref|YP_005892443.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase; ppGpp
synthetase I; (P)ppGpp synthetase) [Neisseria
meningitidis WUE 2594]
gi|433476178|ref|ZP_20433514.1| relA/SpoT family protein [Neisseria meningitidis 88050]
gi|433480304|ref|ZP_20437588.1| relA/SpoT family protein [Neisseria meningitidis 63041]
gi|433516288|ref|ZP_20473052.1| relA/SpoT family protein [Neisseria meningitidis 2004090]
gi|433517081|ref|ZP_20473832.1| relA/SpoT family protein [Neisseria meningitidis 96023]
gi|433520443|ref|ZP_20477157.1| relA/SpoT family protein [Neisseria meningitidis 65014]
gi|433524667|ref|ZP_20481324.1| relA/SpoT family protein [Neisseria meningitidis 97020]
gi|433528943|ref|ZP_20485550.1| relA/SpoT family protein [Neisseria meningitidis NM3652]
gi|433531037|ref|ZP_20487620.1| relA/SpoT family protein [Neisseria meningitidis NM3642]
gi|433533304|ref|ZP_20489862.1| relA/SpoT family protein [Neisseria meningitidis 2007056]
gi|433535188|ref|ZP_20491722.1| relA/SpoT family protein [Neisseria meningitidis 2001212]
gi|433541616|ref|ZP_20498062.1| relA/SpoT family protein [Neisseria meningitidis 63006]
gi|319410984|emb|CBY91380.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase; ppGpp
synthetase I; (P)ppGpp synthetase) [Neisseria
meningitidis WUE 2594]
gi|432208694|gb|ELK64670.1| relA/SpoT family protein [Neisseria meningitidis 88050]
gi|432214480|gb|ELK70380.1| relA/SpoT family protein [Neisseria meningitidis 63041]
gi|432251574|gb|ELL06938.1| relA/SpoT family protein [Neisseria meningitidis 2004090]
gi|432252740|gb|ELL08091.1| relA/SpoT family protein [Neisseria meningitidis 65014]
gi|432255155|gb|ELL10486.1| relA/SpoT family protein [Neisseria meningitidis 96023]
gi|432258353|gb|ELL13639.1| relA/SpoT family protein [Neisseria meningitidis 97020]
gi|432264047|gb|ELL19257.1| relA/SpoT family protein [Neisseria meningitidis NM3652]
gi|432264848|gb|ELL20045.1| relA/SpoT family protein [Neisseria meningitidis NM3642]
gi|432265432|gb|ELL20627.1| relA/SpoT family protein [Neisseria meningitidis 2007056]
gi|432270207|gb|ELL25348.1| relA/SpoT family protein [Neisseria meningitidis 2001212]
gi|432276448|gb|ELL31505.1| relA/SpoT family protein [Neisseria meningitidis 63006]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|254672770|emb|CBA06820.1| GTP pyrophosphokinase [Neisseria meningitidis alpha275]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP--PAKARAVAQETLLIWCSL 129
++A +R MLL MV D RVVLIKLA R ++ + +P P K RAVA+ETL I+ L
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNVPDNPEK-RAVAKETLDIFAPL 194
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+RLG+W LK +LEDL F +P+ +R++
Sbjct: 195 ANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|121635369|ref|YP_975614.1| GTP pyrophosphokinase [Neisseria meningitidis FAM18]
gi|385855749|ref|YP_005902262.1| GTP diphosphokinase [Neisseria meningitidis M01-240355]
gi|416179061|ref|ZP_11610923.1| GTP diphosphokinase [Neisseria meningitidis M6190]
gi|416190680|ref|ZP_11615861.1| GTP diphosphokinase [Neisseria meningitidis ES14902]
gi|433493121|ref|ZP_20450208.1| relA/SpoT family protein [Neisseria meningitidis NM586]
gi|433495235|ref|ZP_20452298.1| relA/SpoT family protein [Neisseria meningitidis NM762]
gi|433503372|ref|ZP_20460330.1| relA/SpoT family protein [Neisseria meningitidis NM126]
gi|120867075|emb|CAM10840.1| GTP pyrophosphokinase [Neisseria meningitidis FAM18]
gi|325131721|gb|EGC54423.1| GTP diphosphokinase [Neisseria meningitidis M6190]
gi|325138860|gb|EGC61411.1| GTP diphosphokinase [Neisseria meningitidis ES14902]
gi|325204690|gb|ADZ00144.1| GTP diphosphokinase [Neisseria meningitidis M01-240355]
gi|432226912|gb|ELK82632.1| relA/SpoT family protein [Neisseria meningitidis NM586]
gi|432228767|gb|ELK84463.1| relA/SpoT family protein [Neisseria meningitidis NM762]
gi|432239393|gb|ELK94946.1| relA/SpoT family protein [Neisseria meningitidis NM126]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP--PAKARAVAQETLLIWCSL 129
++A +R MLL MV D RVVLIKLA R ++ + +P P K RAVA+ETL I+ L
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNVPDNPEK-RAVAKETLDIFAPL 194
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+RLG+W LK +LEDL F +P+ +R++
Sbjct: 195 ANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|222529929|ref|YP_002573811.1| (p)ppGpp synthetase I SpoT/RelA [Caldicellulosiruptor bescii DSM
6725]
gi|222456776|gb|ACM61038.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor bescii DSM
6725]
Length = 726
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 14/173 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ ++VAG+LHDVV+D SL +E EFG E+A+LV GV++L + + R
Sbjct: 68 IASIVAGLLHDVVEDTSASLEDVEREFGKEIAELVDGVTKLGKLEFTSKLER-------- 119
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A + R ML+ M D RV+LIKLADRLHNMRT+ LPP K R AQET+ I+ LA
Sbjct: 120 ----QAENYRKMLIAMAKDIRVILIKLADRLHNMRTLKYLPPEKQRQKAQETIDIYAPLA 175
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 183
RLG+ +K ELEDL L P+ + + +A R Y ++I +++S
Sbjct: 176 HRLGISKIKWELEDLSLRYLDPEGYYDLVEKIAKKRVEREE--YIKKIISLIS 226
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 81/135 (60%), Gaps = 14/135 (10%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+ R K YSI+ KM+ + + ++YD A+R++V +++ CY +L I+H L
Sbjct: 239 IDGRPKHFYSIYRKMKEQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTL 289
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 290 FKPMPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 349
Query: 402 TGNKLQSISSMDESD 416
I S DE +
Sbjct: 350 G-----RIKSTDEDE 359
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 599 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 658
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 358 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 408
Query: 659 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 409 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 450
>gi|296314370|ref|ZP_06864311.1| GTP diphosphokinase [Neisseria polysaccharea ATCC 43768]
gi|296838927|gb|EFH22865.1| GTP diphosphokinase [Neisseria polysaccharea ATCC 43768]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R + T
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERT- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
+A +R MLL MV D RVVLIKLA R ++ + +P + + RAVA+ETL I+ LA
Sbjct: 138 --RQAEIMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNVPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|254429317|ref|ZP_05043024.1| RelA/SpoT family protein [Alcanivorax sp. DG881]
gi|196195486|gb|EDX90445.1| RelA/SpoT family protein [Alcanivorax sp. DG881]
Length = 724
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 87/134 (64%), Gaps = 11/134 (8%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
I G EV + R K +YSI+ KM++K + +VYD RA+R++V P ++ CY+
Sbjct: 233 ISGAEV--NGRAKHIYSIWRKMQKKHLDFGEVYDVRAVRILV---------PQVRDCYAA 281
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L +VH LW + EFDDYI +PK +GYQSLHTAV GP+ LEVQIRT MHE AE G+
Sbjct: 282 LGVVHSLWQHVPKEFDDYIASPKGNGYQSLHTAVVGPERKMLEVQIRTFDMHEEAELGVC 341
Query: 395 AHWLYKETGNKLQS 408
AHW YKE K +S
Sbjct: 342 AHWRYKEGAKKGKS 355
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 88/149 (59%), Gaps = 7/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D + A IL+ V + +L +E+EFG +VA L+ GV R++ I+ L R+ L
Sbjct: 59 DILPAAILYRAVREGQITLLEVEKEFGPDVANLIEGVLRMAAISTSLNPTRK-----AVL 113
Query: 72 GHEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
G ++ +++R ML+ MVDD RV L+KLA+R +R + P + R VAQE I+ L
Sbjct: 114 GQQDGQLDNMRKMLVAMVDDVRVALVKLAERTVIIRAVKESEPERQRKVAQEIFDIYAPL 173
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A RLG+ LK ELEDL F LQP ++K+
Sbjct: 174 AHRLGVGQLKWELEDLSFRYLQPGAYKKI 202
>gi|197284126|ref|YP_002149998.1| GDP/GTP pyrophosphokinase [Proteus mirabilis HI4320]
gi|227358008|ref|ZP_03842350.1| GTP pyrophosphokinase [Proteus mirabilis ATCC 29906]
gi|425067012|ref|ZP_18470128.1| GTP pyrophosphokinase [Proteus mirabilis WGLW6]
gi|425073550|ref|ZP_18476656.1| GTP pyrophosphokinase [Proteus mirabilis WGLW4]
gi|194681613|emb|CAR40620.1| GTP pyrophosphokinase [Proteus mirabilis HI4320]
gi|227161743|gb|EEI46775.1| GTP pyrophosphokinase [Proteus mirabilis ATCC 29906]
gi|404595235|gb|EKA95786.1| GTP pyrophosphokinase [Proteus mirabilis WGLW4]
gi|404601683|gb|EKB02075.1| GTP pyrophosphokinase [Proteus mirabilis WGLW6]
Length = 746
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+EV + R K +YSI+ KM++K++ +++D RA+R+VV +Q CY+ L
Sbjct: 244 NIEVDIYGRPKHIYSIWRKMKKKNLAFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPEGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 11/173 (6%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ A +L + ++ + I E FG+ + LV GV + I QL H
Sbjct: 74 DSMRAALLFPLAEEDLINQEVITEHFGEAIWNLVRGVMEMDAIRQLKATH------TNET 127
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MV+D R V+IKLA+R+ ++R + + A+E I+ LA+
Sbjct: 128 SSVQVDNVRRMLLSMVEDFRCVVIKLAERIAHLREVKDATEDERVLAAKECFNIYAPLAN 187
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 184
RLG+ LK ELED CF L P +++ +A++ R R+ + I VS+
Sbjct: 188 RLGIGQLKWELEDFCFRYLHPDEYKQ----IANLLHER-RIDREQYIDNFVST 235
>gi|218768747|ref|YP_002343259.1| GTP pyrophosphokinase [Neisseria meningitidis Z2491]
gi|121052755|emb|CAM09099.1| GTP pyrophosphokinase [Neisseria meningitidis Z2491]
Length = 769
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 290 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 340
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 341 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 400
Query: 402 TG 403
G
Sbjct: 401 GG 402
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 111 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 169
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 170 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 227
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 228 NRLGVWQLKWQLEDLGFRHQEPEKYREI 255
>gi|385341409|ref|YP_005895280.1| GTP diphosphokinase [Neisseria meningitidis M01-240149]
gi|385857760|ref|YP_005904272.1| GTP diphosphokinase [Neisseria meningitidis NZ-05/33]
gi|416188777|ref|ZP_11614969.1| GTP diphosphokinase [Neisseria meningitidis M0579]
gi|421566004|ref|ZP_16011766.1| GTP-pyrophosphokinase [Neisseria meningitidis NM3081]
gi|325135675|gb|EGC58289.1| GTP diphosphokinase [Neisseria meningitidis M0579]
gi|325201615|gb|ADY97069.1| GTP diphosphokinase [Neisseria meningitidis M01-240149]
gi|325208649|gb|ADZ04101.1| GTP diphosphokinase [Neisseria meningitidis NZ-05/33]
gi|402341886|gb|EJU77058.1| GTP-pyrophosphokinase [Neisseria meningitidis NM3081]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|297614536|gb|ADI48567.1| putative (p)ppGpp synthetase II [uncultured bacterium fss6]
Length = 673
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 92/147 (62%), Gaps = 18/147 (12%)
Query: 257 LVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVV 316
L A ++AL+ E G++ T+ R K +YSI+ KM++K + ++YD RA+R++
Sbjct: 172 LQALQQALDDE---------GVQATVYGRPKHIYSIWRKMQKKHLNFDQLYDIRAVRIIT 222
Query: 317 GDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSAL 376
+++ CY+ L +VH LW I EFDDYI PK +GYQS+HT V GP +
Sbjct: 223 D---------SLKDCYAALGVVHSLWRHIASEFDDYIATPKANGYQSIHTVVLGPQDKHV 273
Query: 377 EVQIRTQKMHEYAEHGLAAHWLYKETG 403
E+QIRTQ MH+ AE G+AAHW+YKE G
Sbjct: 274 EIQIRTQAMHDDAELGVAAHWMYKEGG 300
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 52/88 (59%)
Query: 75 EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 134
+ +++R MLL MV D R VLIKLA+R+ +R + L A+E I+ LA+RLG
Sbjct: 70 QIDNVRRMLLAMVTDVRAVLIKLAERICFLREVKTLDEETRVLAAKECNEIYAPLANRLG 129
Query: 135 LWALKAELEDLCFAVLQPQIFRKMRADL 162
+ LK ELEDL F L P ++ + A L
Sbjct: 130 IGQLKWELEDLAFRYLHPTTYKTIAAQL 157
>gi|319638672|ref|ZP_07993432.1| GTP pyrophosphokinase [Neisseria mucosa C102]
gi|317400056|gb|EFV80717.1| GTP pyrophosphokinase [Neisseria mucosa C102]
Length = 737
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 80/149 (53%), Gaps = 6/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A IL D+ + E V +LV GV + + Q R +
Sbjct: 79 DAVAATILSDIGKYVPTWQELVAERCNSTVCELVKGVDEVQKLTQFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP--PAKARAVAQETLLIWCSL 129
++A +R MLL MV D RVVLIKLA R ++ + +P P K RAVA+ETL I+ L
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNVPDNPEK-RAVAKETLDIFAPL 194
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+RLG+W LK +LEDL F +P+ +R++
Sbjct: 195 ANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|433497736|ref|ZP_20454761.1| relA/SpoT family protein [Neisseria meningitidis M7089]
gi|433499502|ref|ZP_20456507.1| relA/SpoT family protein [Neisseria meningitidis M7124]
gi|432231675|gb|ELK87334.1| relA/SpoT family protein [Neisseria meningitidis M7089]
gi|432233068|gb|ELK88702.1| relA/SpoT family protein [Neisseria meningitidis M7124]
Length = 737
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP--PAKARAVAQETLLIWCSL 129
++A +R MLL MV D RVVLIKLA R ++ + +P P K RAVA+ETL I+ L
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNVPDNPEK-RAVAKETLDIFAPL 194
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+RLG+W LK +LEDL F +P+ +R++
Sbjct: 195 ANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|421568219|ref|ZP_16013946.1| GTP-pyrophosphokinase [Neisseria meningitidis NM3001]
gi|402342338|gb|EJU77506.1| GTP-pyrophosphokinase [Neisseria meningitidis NM3001]
Length = 737
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP--PAKARAVAQETLLIWCSL 129
++A +R MLL MV D RVVLIKLA R ++ + +P P K RAVA+ETL I+ L
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNVPDNPEK-RAVAKETLDIFAPL 194
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+RLG+W LK +LEDL F +P+ +R++
Sbjct: 195 ANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|298369524|ref|ZP_06980841.1| GTP diphosphokinase [Neisseria sp. oral taxon 014 str. F0314]
gi|298282081|gb|EFI23569.1| GTP diphosphokinase [Neisseria sp. oral taxon 014 str. F0314]
Length = 737
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L + + + E+ + +LV GV + + R +
Sbjct: 79 DAVAATLLAAISGYCPDWQQVVTEQCNATICELVKGVDEVQKLTHFARVDSLATSEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R M+ + +P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTMQFLSNIPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|261378943|ref|ZP_05983516.1| GTP diphosphokinase [Neisseria cinerea ATCC 14685]
gi|269144641|gb|EEZ71059.1| GTP diphosphokinase [Neisseria cinerea ATCC 14685]
Length = 737
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R M+ + +P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTMQFLSNIPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|421541039|ref|ZP_15987174.1| GTP-pyrophosphokinase [Neisseria meningitidis 93004]
gi|402316766|gb|EJU52307.1| GTP-pyrophosphokinase [Neisseria meningitidis 93004]
Length = 737
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|433537218|ref|ZP_20493718.1| relA/SpoT family protein [Neisseria meningitidis 77221]
gi|389605160|emb|CCA44081.1| GTP pyrophosphokinase [Neisseria meningitidis alpha522]
gi|432272414|gb|ELL27524.1| relA/SpoT family protein [Neisseria meningitidis 77221]
Length = 737
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|416168553|ref|ZP_11608013.1| GTP diphosphokinase [Neisseria meningitidis OX99.30304]
gi|325130789|gb|EGC53524.1| GTP diphosphokinase [Neisseria meningitidis OX99.30304]
Length = 737
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|291297171|ref|YP_003508569.1| (p)ppGpp synthetase I SpoT/RelA [Meiothermus ruber DSM 1279]
gi|290472130|gb|ADD29549.1| (p)ppGpp synthetase I, SpoT/RelA [Meiothermus ruber DSM 1279]
Length = 750
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 102/172 (59%), Gaps = 18/172 (10%)
Query: 236 KSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSK 295
KS A+++A VQ A L E+AL ++ ++ S I EVT R K L+SI+ K
Sbjct: 230 KSHRAEREA-AVQAAKEKL------EQALARDFILKQS-IKKFEVT--GRTKHLFSIWKK 279
Query: 296 MRRKDVGIHKVYDARALRVVVGDKNGTLHGPA------IQCCYSLLDIVHRLWIPIDGEF 349
M R+ I ++YD ALRV++ + G P Q CY +L +VH LW PI G
Sbjct: 280 MEREGKTIEQIYDLLALRVILDPRQGP--DPEENSLREKQVCYHVLGLVHALWQPIPGRV 337
Query: 350 DDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
DYI PKP+GYQSLHT V +G LEVQIRT++MH AE G+AAHWLYKE
Sbjct: 338 KDYIAVPKPNGYQSLHTTVIAVNGLPLEVQIRTREMHRVAEFGVAAHWLYKE 389
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 98/160 (61%), Gaps = 4/160 (2%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V+T++AG+LHD ++D IEE FG V K+V G +++S + +L + +G
Sbjct: 82 VETLLAGLLHDTIEDTEVRPEDIEERFGAAVRKIVEGETKVSKLYKLAHAAQEDKHAEG- 140
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ A DLR M + M +D R++++KLADRLHN+RT+ +PP K + +A+ETL I+ LA
Sbjct: 141 ---KHAEDLRQMFIAMAEDVRIIIVKLADRLHNLRTLEFMPPHKQQRIARETLEIYAPLA 197
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 170
RLG+ +K ELEDL F L P+ ++ + L S + R
Sbjct: 198 HRLGIGQVKLELEDLSFRYLDPENYQALERRLKSHRAERE 237
>gi|421549362|ref|ZP_15995379.1| GTP pyrophosphokinase [Neisseria meningitidis NM2781]
gi|402324184|gb|EJU59621.1| GTP pyrophosphokinase [Neisseria meningitidis NM2781]
Length = 737
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|385850732|ref|YP_005897247.1| GTP diphosphokinase [Neisseria meningitidis M04-240196]
gi|325205555|gb|ADZ01008.1| GTP diphosphokinase [Neisseria meningitidis M04-240196]
Length = 737
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQKPEKYREI 223
>gi|148658211|ref|YP_001278416.1| (p)ppGpp synthetase I SpoT/RelA [Roseiflexus sp. RS-1]
gi|148570321|gb|ABQ92466.1| (p)ppGpp synthetase I, SpoT/RelA [Roseiflexus sp. RS-1]
Length = 774
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 87/147 (59%), Gaps = 18/147 (12%)
Query: 262 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 321
+ LEKE G++ ++ R K +YSI+ KM RK V + ++YD A+RV+V
Sbjct: 273 QVLEKE---------GIKADITGRPKHIYSIYRKMERKGVSLDQIYDQLAVRVIVD---- 319
Query: 322 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 381
+ CY +L +VH W P+ GEFDDYI PK S YQSLHT V P G E+QIR
Sbjct: 320 -----TVADCYRVLGLVHATWPPVPGEFDDYIAMPKESMYQSLHTTVLIPGGQPCEIQIR 374
Query: 382 TQKMHEYAEHGLAAHWLYKETGNKLQS 408
T +MHE AE G+AAHW YKE ++ +
Sbjct: 375 THEMHEVAERGIAAHWRYKEGFGRIDA 401
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 94/160 (58%), Gaps = 12/160 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+V A +LHDV++D S + FG E+A LV V++LS + R ++ GT
Sbjct: 116 SVAAALLHDVLEDTLVSKEQLTALFGAEIANLVDSVTKLSALEARTREEAQV----GTY- 170
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
R M + M DDPRVVL+KLADRLHNMRTI +L + + +A ETL I+ LA R
Sbjct: 171 -------RKMFIAMADDPRVVLVKLADRLHNMRTIGSLSEERQKRMALETLEIYAPLAHR 223
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
LG+W +K ELED FAVL P+ ++++ L+ R R+
Sbjct: 224 LGIWQIKWELEDRAFAVLNPEKYQEISRQLSLRRDARERL 263
>gi|416184299|ref|ZP_11613025.1| GTP diphosphokinase [Neisseria meningitidis M13399]
gi|416212198|ref|ZP_11621803.1| GTP diphosphokinase [Neisseria meningitidis M01-240013]
gi|325133621|gb|EGC56279.1| GTP diphosphokinase [Neisseria meningitidis M13399]
gi|325145077|gb|EGC67360.1| GTP diphosphokinase [Neisseria meningitidis M01-240013]
Length = 737
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQKPEKYREI 223
>gi|421561765|ref|ZP_16007603.1| relA/SpoT family protein [Neisseria meningitidis NM2657]
gi|402336792|gb|EJU72050.1| relA/SpoT family protein [Neisseria meningitidis NM2657]
Length = 737
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQKPEKYREI 223
>gi|339445999|ref|YP_004712003.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Eggerthella sp. YY7918]
gi|338905751|dbj|BAK45602.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Eggerthella sp. YY7918]
Length = 791
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K LYSI+ KM +K G ++YD A+R++V +++ CYS L
Sbjct: 279 GIQAQIMGRPKHLYSIYQKMTKKGKGFSEIYDLIAVRIIV---------KSVKDCYSALG 329
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT+ MH +E+G+AAH
Sbjct: 330 AVHTLWHPMPGRFKDYIAMPKFNMYQSLHTTVIGPAGRPLEVQIRTEDMHRTSEYGVAAH 389
Query: 397 WLYKETGNK 405
W YKE G K
Sbjct: 390 WRYKEKGGK 398
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 102/172 (59%), Gaps = 14/172 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V+T+VA +LHD V+D + +E EF E+A+LV GV++++ RI V +
Sbjct: 114 VETLVASLLHDTVEDTSVTREDVEREFSPEIAQLVEGVTKIT----------RIEVE--S 161
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
L E+A +R ML+ M D RV++IKLADRLHNMRT+ AL + ++ETL I+ +A
Sbjct: 162 LSDEQAATIRKMLVAMSKDIRVIVIKLADRLHNMRTLGALREDRRIFKSRETLEIYAPIA 221
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
RLG+ +K ELEDL F L+P F+++ + S R GY +I I+
Sbjct: 222 HRLGINNIKWELEDLSFFYLEPNKFKQVSRMVTE--SRAEREGYLDQIIEIL 271
>gi|385329001|ref|YP_005883304.1| GTP pyrophosphokinase [Neisseria meningitidis alpha710]
gi|308389853|gb|ADO32173.1| GTP pyrophosphokinase [Neisseria meningitidis alpha710]
Length = 769
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 290 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 340
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 341 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 400
Query: 402 TG 403
G
Sbjct: 401 GG 402
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 111 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 169
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 170 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 227
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 228 NRLGVWQLKWQLEDLGFRHQEPEKYREI 255
>gi|268597393|ref|ZP_06131560.1| GTP pyrophosphokinase [Neisseria gonorrhoeae FA19]
gi|268682609|ref|ZP_06149471.1| GTP pyrophosphokinase [Neisseria gonorrhoeae PID332]
gi|268551181|gb|EEZ46200.1| GTP pyrophosphokinase [Neisseria gonorrhoeae FA19]
gi|268622893|gb|EEZ55293.1| GTP pyrophosphokinase [Neisseria gonorrhoeae PID332]
Length = 737
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATSEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|339629624|ref|YP_004721267.1| GTP pyrophosphokinase [Sulfobacillus acidophilus TPY]
gi|379007260|ref|YP_005256711.1| (p)ppGpp synthetase I SpoT/RelA [Sulfobacillus acidophilus DSM
10332]
gi|339287413|gb|AEJ41524.1| GTP pyrophosphokinase [Sulfobacillus acidophilus TPY]
gi|361053522|gb|AEW05039.1| (p)ppGpp synthetase I, SpoT/RelA [Sulfobacillus acidophilus DSM
10332]
Length = 719
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 94/147 (63%), Gaps = 12/147 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VA +LHDVV+D +L IE FG EVA+LV GV++L R+ V T
Sbjct: 64 TIVAALLHDVVEDTAYTLADIESRFGTEVAQLVDGVTKLD----------RLEVR--TQE 111
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
E+A +LR M L M D RV+LIKLADRLHNMRT+ LP + +A+ET+ I+ LA R
Sbjct: 112 EEQAENLRKMFLAMAKDIRVILIKLADRLHNMRTLKHLPQDRVTRIAKETMEIYAPLAHR 171
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMR 159
LG++ +K ELEDL F LQP +++M+
Sbjct: 172 LGIFRIKWELEDLAFQYLQPAAYQEMK 198
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
GM +S R K LYSI+ KM ++ ++YD A+RV+V +++ CY++L
Sbjct: 227 GMVSEVSGRAKHLYSIYQKMHKQGKDFGQIYDLVAVRVLV---------ESVKDCYAVLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 278 LVHSLWKPVPGRFKDYIAMPKSNLYQSLHTTVIGPHGEPLEVQIRTFEMHHTAEYGIAAH 337
Query: 397 WLYKETGNK 405
W YKE +K
Sbjct: 338 WRYKEGSSK 346
Score = 39.3 bits (90), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 598 INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRS 657
K+ LR +L W+ +R A ++ K + D V V P G+++ L +
Sbjct: 351 FEQKLSWLRQLLEWQRDMRDAAEFMETL---KVDLFSDEV------FVFTPKGDVIDLPA 401
Query: 658 GSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVEVRV 698
G+T D A ++ G VNG++V T L+ GDIVE+ V
Sbjct: 402 GATPVDFAYRIHTDIGHHCVGAKVNGRIVPLATPLESGDIVEILV 446
>gi|15677581|ref|NP_274738.1| GTP pyrophosphokinase [Neisseria meningitidis MC58]
gi|385852672|ref|YP_005899186.1| GTP diphosphokinase [Neisseria meningitidis H44/76]
gi|416195523|ref|ZP_11617762.1| GTP diphosphokinase [Neisseria meningitidis CU385]
gi|427826412|ref|ZP_18993465.1| GTP pyrophosphokinase [Neisseria meningitidis H44/76]
gi|433488915|ref|ZP_20446068.1| relA/SpoT family protein [Neisseria meningitidis M13255]
gi|433505519|ref|ZP_20462453.1| relA/SpoT family protein [Neisseria meningitidis 9506]
gi|433507728|ref|ZP_20464629.1| relA/SpoT family protein [Neisseria meningitidis 9757]
gi|433509821|ref|ZP_20466681.1| relA/SpoT family protein [Neisseria meningitidis 12888]
gi|433511928|ref|ZP_20468745.1| relA/SpoT family protein [Neisseria meningitidis 4119]
gi|7226990|gb|AAF42080.1| GTP pyrophosphokinase [Neisseria meningitidis MC58]
gi|316985746|gb|EFV64691.1| GTP pyrophosphokinase [Neisseria meningitidis H44/76]
gi|325140806|gb|EGC63316.1| GTP diphosphokinase [Neisseria meningitidis CU385]
gi|325199676|gb|ADY95131.1| GTP diphosphokinase [Neisseria meningitidis H44/76]
gi|432221990|gb|ELK77792.1| relA/SpoT family protein [Neisseria meningitidis M13255]
gi|432239674|gb|ELK95221.1| relA/SpoT family protein [Neisseria meningitidis 9506]
gi|432239778|gb|ELK95324.1| relA/SpoT family protein [Neisseria meningitidis 9757]
gi|432245123|gb|ELL00595.1| relA/SpoT family protein [Neisseria meningitidis 12888]
gi|432245955|gb|ELL01418.1| relA/SpoT family protein [Neisseria meningitidis 4119]
Length = 737
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQKPEKYREI 223
>gi|268601819|ref|ZP_06135986.1| GTP pyrophosphokinase [Neisseria gonorrhoeae PID18]
gi|268585950|gb|EEZ50626.1| GTP pyrophosphokinase [Neisseria gonorrhoeae PID18]
Length = 737
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATSEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|375088782|ref|ZP_09735120.1| RelA/SpoT family protein [Dolosigranulum pigrum ATCC 51524]
gi|374561747|gb|EHR33086.1| RelA/SpoT family protein [Dolosigranulum pigrum ATCC 51524]
Length = 490
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 95/168 (56%), Gaps = 15/168 (8%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E ++ R K ++SI+ KMR + ++YD ALRV+V P+I+ CY +L
Sbjct: 234 IEADITGRPKHIFSIYKKMRNQKKQFSEIYDLLALRVIV---------PSIKDCYGVLGA 284
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
+H W P+ G F DYI PK + YQSLHT V GPD + LEVQIRT KMHE AE+G+AAHW
Sbjct: 285 IHTKWKPMPGRFKDYIAMPKANMYQSLHTTVLGPDATPLEVQIRTFKMHEIAEYGVAAHW 344
Query: 398 LYKETGNKLQSISSMDE------SDIEASSSLSKDTDDHNPLDTDLFQ 439
YKE MD+ IE + + +D + + D+F+
Sbjct: 345 AYKEGITTKAPTDEMDQHISWFRDIIELQTESNTASDFMDSIKQDIFK 392
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 81/159 (50%), Gaps = 12/159 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV G LHDVV+D + I E F EVA LV GV++L ++
Sbjct: 70 TVATGFLHDVVEDTEYTYADIAELFNPEVADLVDGVTKLGKFKFKSKKEH---------- 119
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A + R ML+ M D RVVL+KLADRLHNMRT+ K +A ET+ I+ LA R
Sbjct: 120 --QAENHRKMLIAMAQDVRVVLVKLADRLHNMRTLSYHRKEKQVDIATETMEIYAPLADR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
LG+ +K ELED+ Q + ++ + S R R
Sbjct: 178 LGISRIKWELEDISLRYTNSQQYYRIVHMMNSRREDRER 216
>gi|297581075|ref|ZP_06943000.1| GTP pyrophosphokinase [Vibrio cholerae RC385]
gi|297534901|gb|EFH73737.1| GTP pyrophosphokinase [Vibrio cholerae RC385]
Length = 738
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 397 WLYKETGNKLQS 408
W YKE + +S
Sbjct: 354 WKYKEGSSAARS 365
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA +L S+EE +G EV KL+ GV ++ I QL NV G+
Sbjct: 74 TLVAALLFPNATSGVLDNESLEEGYGREVVKLIHGVEEMAAIGQL-------NVTMHGSE 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+R + P R A+E I+ LA+
Sbjct: 127 ASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKNEPDEVRRVAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ L+ R+ + I VS + +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----RRIVREQYIRDFVSDLRAEMKQ 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ + + +H+ S+ + + + + FD L D R
Sbjct: 242 SGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|254670577|emb|CBA06476.1| GTP pyrophosphokinase [Neisseria meningitidis alpha153]
Length = 773
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 294 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 344
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 345 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 404
Query: 402 TG 403
G
Sbjct: 405 GG 406
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 115 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 173
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 174 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 231
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 232 NRLGVWQLKWQLEDLGFRHQKPEKYREI 259
>gi|259909467|ref|YP_002649823.1| GDP/GTP pyrophosphokinase [Erwinia pyrifoliae Ep1/96]
gi|224965089|emb|CAX56621.1| GTP pyrophosphokinase [Erwinia pyrifoliae Ep1/96]
Length = 744
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIV---------AERLQDCYGALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTLYRHLPNEFDDYVANPKPNGYQSIHTVVLGPKGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKETG 403
W YKE G
Sbjct: 355 WKYKEGG 361
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +L + D S +E +FG + LV GV + I QL H ++
Sbjct: 74 ETLSAALLFPLADAGVVSEEVLEAQFGQSIVSLVHGVRDMDAIRQLKATH------NDSM 127
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E+ +++R MLL MV+D R V+IKLA+R+ ++R + P + A+E I+ LA+
Sbjct: 128 ASEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLAN 187
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ LK ELED CF L P+ ++++
Sbjct: 188 RLGIGQLKWELEDFCFRYLHPEEYKRI 214
>gi|161870582|ref|YP_001599754.1| GTP pyrophosphokinase [Neisseria meningitidis 053442]
gi|161596135|gb|ABX73795.1| GTP pyrophosphokinase [Neisseria meningitidis 053442]
Length = 773
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 294 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 344
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 345 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 404
Query: 402 TG 403
G
Sbjct: 405 GG 406
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 115 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 173
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 174 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 231
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 232 NRLGVWQLKWQLEDLGFRHQEPEKYREI 259
>gi|433465713|ref|ZP_20423186.1| relA/SpoT family protein [Neisseria meningitidis NM422]
gi|433491102|ref|ZP_20448217.1| relA/SpoT family protein [Neisseria meningitidis NM418]
gi|432201358|gb|ELK57440.1| relA/SpoT family protein [Neisseria meningitidis NM422]
gi|432225937|gb|ELK81673.1| relA/SpoT family protein [Neisseria meningitidis NM418]
Length = 737
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQKPEKYREI 223
>gi|194099159|ref|YP_002002244.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae NCCP11945]
gi|240014631|ref|ZP_04721544.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae DGI18]
gi|240017077|ref|ZP_04723617.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae FA6140]
gi|240121156|ref|ZP_04734118.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae PID24-1]
gi|268595274|ref|ZP_06129441.1| GTP pyrophosphokinase [Neisseria gonorrhoeae 35/02]
gi|268604151|ref|ZP_06138318.1| GTP pyrophosphokinase [Neisseria gonorrhoeae PID1]
gi|268684769|ref|ZP_06151631.1| GTP pyrophosphokinase [Neisseria gonorrhoeae SK-92-679]
gi|268687049|ref|ZP_06153911.1| GTP pyrophosphokinase [Neisseria gonorrhoeae SK-93-1035]
gi|291043321|ref|ZP_06569044.1| GTP pyrophosphokinase [Neisseria gonorrhoeae DGI2]
gi|385336161|ref|YP_005890108.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae TCDC-NG08107]
gi|193934449|gb|ACF30273.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae NCCP11945]
gi|268548663|gb|EEZ44081.1| GTP pyrophosphokinase [Neisseria gonorrhoeae 35/02]
gi|268588282|gb|EEZ52958.1| GTP pyrophosphokinase [Neisseria gonorrhoeae PID1]
gi|268625053|gb|EEZ57453.1| GTP pyrophosphokinase [Neisseria gonorrhoeae SK-92-679]
gi|268627333|gb|EEZ59733.1| GTP pyrophosphokinase [Neisseria gonorrhoeae SK-93-1035]
gi|291012927|gb|EFE04910.1| GTP pyrophosphokinase [Neisseria gonorrhoeae DGI2]
gi|317164704|gb|ADV08245.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae TCDC-NG08107]
Length = 737
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATSEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|406936392|gb|EKD70123.1| hypothetical protein ACD_46C00628G0005 [uncultured bacterium]
Length = 731
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 14/159 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T++A ILHDVV+D I E+FG EV+ LV GV++L+ ++
Sbjct: 84 TIMAAILHDVVEDTPVKQAEIAEKFGQEVSDLVDGVTKLT------------QIHFDNYA 131
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A + R M++ M D RV+L+KLADRLHNMRTIYALPP K R ++ ETL I+ +A+R
Sbjct: 132 QAQAENFRKMVMAMASDIRVILVKLADRLHNMRTIYALPPHKRRRISLETLEIFSPIANR 191
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
LG+ A + ELEDL FA + P FR D A + NR
Sbjct: 192 LGMHAFRVELEDLGFATMYP--FRYKVVDRAVSKATGNR 228
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 172/376 (45%), Gaps = 72/376 (19%)
Query: 54 INQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVL-IKLADRLHNMRTIYALPP 112
INQ L + V + L +EA+ + G DP + + +A+ L MR PP
Sbjct: 30 INQYLTHEDILKVEEAYLFAKEAHGSQTRHTG---DPYITHPVAVAEILAQMRMD---PP 83
Query: 113 AKARA----VAQETLLIWCSLASRLGLWALKAELEDLC-------------FAVLQPQIF 155
A V ++T + +A + G E+ DL +A Q + F
Sbjct: 84 TIMAAILHDVVEDTPVKQAEIAEKFG-----QEVSDLVDGVTKLTQIHFDNYAQAQAENF 138
Query: 156 RKMRADLAS-----MWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKD 210
RKM +AS + +R+ R TI + PP R S
Sbjct: 139 RKMVMAMASDIRVILVKLADRLHNMR---TIYALPPHKRRRIS----------------- 178
Query: 211 LLEAVVPFDILSDRRKRTKF---LHDLAKSSEAQKKAKVVQDA-GIALTSLVACEEALEK 266
LE + F +++R F L DL ++ + KVV A A + E +++
Sbjct: 179 -LETLEIFSPIANRLGMHAFRVELEDLGFATMYPFRYKVVDRAVSKATGNRKEIMEMIDQ 237
Query: 267 ELL--ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLH 324
++ + + IP TLS R K +YSI+ KM +K + ++ D R++V DK
Sbjct: 238 QIRDGLKKANIPS--PTLSGRGKHVYSIYKKMLQKHLSFSEIMDVYGFRIIV-DK----- 289
Query: 325 GPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQK 384
+ CY +L ++H L+ PI F DYI PK +GYQSLHT + GP G +EVQIRT++
Sbjct: 290 ---VDTCYRVLGVLHNLFKPITQRFKDYIAIPKANGYQSLHTTLFGPYGVPIEVQIRTEE 346
Query: 385 MHEYAEHGLAAHWLYK 400
MH+ AE+G+AAHWLYK
Sbjct: 347 MHKMAENGIAAHWLYK 362
>gi|333979510|ref|YP_004517455.1| (p)ppGpp synthetase I SpoT/RelA [Desulfotomaculum kuznetsovii DSM
6115]
gi|333822991|gb|AEG15654.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfotomaculum kuznetsovii DSM
6115]
Length = 724
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 82/128 (64%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K LYSI++KM ++ + ++YD A+RV+V +I+ CY++L
Sbjct: 235 GIFADIQGRPKHLYSIYTKMEKQQKDLSEIYDVMAVRVIV---------ESIRDCYAVLG 285
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH LW PI G F DYI PK + YQSLHT V GP G LE+QIRT++MH AE+G+AAH
Sbjct: 286 TVHTLWKPIPGRFKDYIAMPKSNMYQSLHTTVVGPQGEPLEIQIRTREMHRTAEYGIAAH 345
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 346 WRYKEGGK 353
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 94/148 (63%), Gaps = 12/148 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ T+VAG+LHDVV+D +L I+ FGDEVA LV GV++LS + +R +Q
Sbjct: 70 LQTLVAGLLHDVVEDTGVTLEEIKTAFGDEVALLVDGVTKLSRLE-----YRSKEEHQ-- 122
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
A +LR M L M D RV+LIKLADRLHN+RT+ K + +A+ETL I+ LA
Sbjct: 123 -----AENLRKMFLAMAQDIRVILIKLADRLHNLRTLKYHTETKQKEIARETLEIYAPLA 177
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG++ LK ELEDL F L+P+ + ++
Sbjct: 178 HRLGIYHLKWELEDLSFRYLEPEKYYEL 205
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 598 INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRS 657
++ K+ LR +L W+ +LR +S K + DSV V P G+++ L +
Sbjct: 358 LDQKLAWLRQILEWQRELRDAREFMESL---KIDLFADSV------FVFTPKGDVIELPA 408
Query: 658 GSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 696
GS D A +V E G + VNG++V + +LK+GDIVE+
Sbjct: 409 GSVPIDFAYRVHTEVGHRCVGARVNGRIVPLDYQLKNGDIVEI 451
>gi|424592150|ref|ZP_18031574.1| GTP pyrophosphokinase [Vibrio cholerae CP1037(10)]
gi|408029811|gb|EKG66513.1| GTP pyrophosphokinase [Vibrio cholerae CP1037(10)]
Length = 738
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 397 WLYKETGNKLQS 408
W YKE + +S
Sbjct: 354 WKYKEGSSAARS 365
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 109/215 (50%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA +L + S+EE +G EV KL+ GV ++ I QL NV G+
Sbjct: 74 TLVAALLFPIATSGVLDNESLEEGYGREVVKLIHGVEEMAAIGQL-------NVTMHGSE 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+R + P R A+E I+ LA+
Sbjct: 127 ASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKNEPDEVRRVAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ L+ R+ + I VS + +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----RRIVREQYIRDFVSDLRAEMKQ 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ + + +H+ S+ + + + + FD L D R
Sbjct: 242 SGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|345876146|ref|ZP_08827921.1| GTP diphosphokinase [Neisseria weaveri LMG 5135]
gi|417957898|ref|ZP_12600816.1| GTP diphosphokinase [Neisseria weaveri ATCC 51223]
gi|343967103|gb|EGV35353.1| GTP diphosphokinase [Neisseria weaveri LMG 5135]
gi|343967644|gb|EGV35887.1| GTP diphosphokinase [Neisseria weaveri ATCC 51223]
Length = 737
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 81/127 (63%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ ++ R K +YSI+ KM +K + +YD RA+R++V + CY+ L
Sbjct: 253 GIHYDVAGRPKHIYSIYRKMVKKKLDFSGLYDIRAVRILVD---------TVPECYTTLG 303
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW PI GEFDDYI PK +GY+SLHT V GP+ +EVQIRT MH++ E G+AAH
Sbjct: 304 LVHSLWQPIPGEFDDYIAQPKGNGYKSLHTVVVGPEDKGVEVQIRTFDMHQFNEFGVAAH 363
Query: 397 WLYKETG 403
W YKE G
Sbjct: 364 WRYKEGG 370
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D + A +L D+ + E+ + V LV G+ + + Q + + +
Sbjct: 79 DAIAATLLTDIPRFCDNWQEKVTEKCNETVCGLVKGIDEVQKLTQFAKVESFATPEERS- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAK-ARAVAQETLLIWCSLA 130
+A +R MLL MV D RVVLIKLA R M+ I LP ++ R +A+ETL I+ LA
Sbjct: 138 --NQAETMRKMLLAMVSDIRVVLIKLALRTRTMQFIGTLPDSEDKRLLAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRA 160
+RLG+W LK +LEDL F P+ ++++ A
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQNPEKYKEIAA 225
>gi|385787354|ref|YP_005818463.1| GDP/GTP pyrophosphokinase [Erwinia sp. Ejp617]
gi|310766626|gb|ADP11576.1| GDP/GTP pyrophosphokinase [Erwinia sp. Ejp617]
Length = 744
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIV---------AERLQDCYGALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTLYRHLPNEFDDYVANPKPNGYQSIHTVVLGPKGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKETG 403
W YKE G
Sbjct: 355 WKYKEGG 361
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +L + D S +E +FG + LV GV + I QL H ++
Sbjct: 74 ETLSAALLFPLADAGVVSEEVLEAQFGQSIVSLVHGVRDMDAIRQLKATH------NDSM 127
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E+ +++R MLL MV+D R V+IKLA+R+ ++R + P + A+E I+ LA+
Sbjct: 128 ASEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLAN 187
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ LK ELED CF L P+ ++++
Sbjct: 188 RLGIGQLKWELEDFCFRYLHPEEYKRI 214
>gi|428219731|ref|YP_007104196.1| (p)ppGpp synthetase I SpoT/RelA [Pseudanabaena sp. PCC 7367]
gi|427991513|gb|AFY71768.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudanabaena sp. PCC 7367]
Length = 746
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 94/163 (57%), Gaps = 15/163 (9%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K LY I+ KM+ + ++YD A+R++V +K + CY +L +VH
Sbjct: 255 ISGRPKHLYGIYQKMQVRQKKYEEIYDVSAIRIIVENK---------EACYRVLAVVHDC 305
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ PI G F DYI PKP+ YQSLHT V GP+G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 306 FRPIPGRFKDYIGLPKPNRYQSLHTVVIGPNGRPLEVQIRTWEMHHIAEYGIAAHWKYKE 365
Query: 402 TGNKLQSISSMDESD------IEASSSLSKDTDDHNPLDTDLF 438
T + Q+ S DE +E L D + + L +LF
Sbjct: 366 TNSSHQATSQEDEKFTWLRQLVEWQRELKDDQEYIDTLKENLF 408
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 14/171 (8%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+VAG LHDVV+D ++ IE EFG E+A LV GV++LS N + R
Sbjct: 87 IVAGFLHDVVEDTEVTVADIEAEFGAEIAALVEGVTKLSKFNFESKTER----------- 135
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
A + R M L M D RV+++KLADRLHNMRT+ LP K +A+ET+ I+ LA+RL
Sbjct: 136 -AAENFRRMFLAMAQDIRVIVVKLADRLHNMRTLEHLPAPKQANIARETMEIFAPLANRL 194
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 184
G+ +K ELEDL F + +++MR+ + + RNR R+ I+ S
Sbjct: 195 GIGQIKWELEDLSFKYIDKDAYQQMRSLVVE--NRRNREERLARVRDILRS 243
>gi|59801730|ref|YP_208442.1| GTP pyrophosphokinase [Neisseria gonorrhoeae FA 1090]
gi|254494171|ref|ZP_05107342.1| GTP pyrophosphokinase [Neisseria gonorrhoeae 1291]
gi|268599563|ref|ZP_06133730.1| GTP pyrophosphokinase [Neisseria gonorrhoeae MS11]
gi|293398632|ref|ZP_06642810.1| GTP pyrophosphokinase [Neisseria gonorrhoeae F62]
gi|59718625|gb|AAW90030.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae FA 1090]
gi|226513211|gb|EEH62556.1| GTP pyrophosphokinase [Neisseria gonorrhoeae 1291]
gi|268583694|gb|EEZ48370.1| GTP pyrophosphokinase [Neisseria gonorrhoeae MS11]
gi|291611103|gb|EFF40200.1| GTP pyrophosphokinase [Neisseria gonorrhoeae F62]
Length = 737
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|188534843|ref|YP_001908640.1| GDP/GTP pyrophosphokinase [Erwinia tasmaniensis Et1/99]
gi|188029885|emb|CAO97769.1| GTP pyrophosphokinase [Erwinia tasmaniensis Et1/99]
Length = 744
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIV---------AERLQDCYGALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTLYRHLPSEFDDYVANPKPNGYQSIHTVVLGPKGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKETG 403
W YKE G
Sbjct: 355 WKYKEGG 361
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +L + + + +E +FG + LV GV + I QL H ++
Sbjct: 74 ETLSAALLFPLANANVVTEDVLEAQFGQPIVSLVHGVRDMDAIRQLKATH------NDSM 127
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E+ +++R MLL MV+D R V+IKLA+R+ ++R + P + A+E I+ LA+
Sbjct: 128 ASEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLAN 187
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ LK ELED CF L P+ ++++
Sbjct: 188 RLGIGQLKWELEDFCFRYLHPEEYKRI 214
>gi|15642447|ref|NP_232080.1| GTP pyrophosphokinase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121728974|ref|ZP_01681978.1| GTP pyrophosphokinase [Vibrio cholerae V52]
gi|147673921|ref|YP_001217953.1| GTP pyrophosphokinase [Vibrio cholerae O395]
gi|153214531|ref|ZP_01949440.1| GTP pyrophosphokinase [Vibrio cholerae 1587]
gi|153803094|ref|ZP_01957680.1| GTP pyrophosphokinase [Vibrio cholerae MZO-3]
gi|227082572|ref|YP_002811123.1| GTP pyrophosphokinase [Vibrio cholerae M66-2]
gi|227118893|ref|YP_002820789.1| GTP pyrophosphokinase [Vibrio cholerae O395]
gi|229507489|ref|ZP_04396994.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae BX
330286]
gi|229512316|ref|ZP_04401795.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae B33]
gi|229514077|ref|ZP_04403539.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae TMA
21]
gi|229519452|ref|ZP_04408895.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae RC9]
gi|229521279|ref|ZP_04410699.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae TM
11079-80]
gi|229524437|ref|ZP_04413842.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae bv.
albensis VL426]
gi|229527057|ref|ZP_04416452.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae
12129(1)]
gi|229606994|ref|YP_002877642.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae
MJ-1236]
gi|254291651|ref|ZP_04962439.1| GTP pyrophosphokinase [Vibrio cholerae AM-19226]
gi|254849575|ref|ZP_05238925.1| GTP pyrophosphokinase [Vibrio cholerae MO10]
gi|255746878|ref|ZP_05420823.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholera CIRS
101]
gi|262162043|ref|ZP_06031059.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae INDRE
91/1]
gi|262167282|ref|ZP_06034992.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae RC27]
gi|298500192|ref|ZP_07009997.1| ppGpp synthetase I [Vibrio cholerae MAK 757]
gi|360036326|ref|YP_004938089.1| GTP pyrophosphokinase [Vibrio cholerae O1 str. 2010EL-1786]
gi|379742239|ref|YP_005334208.1| GTP pyrophosphokinase [Vibrio cholerae IEC224]
gi|384425390|ref|YP_005634748.1| GTP pyrophosphokinase(p)ppGpp synthetase I [Vibrio cholerae
LMA3984-4]
gi|417814466|ref|ZP_12461119.1| GTP pyrophosphokinase [Vibrio cholerae HC-49A2]
gi|417818206|ref|ZP_12464834.1| GTP pyrophosphokinase [Vibrio cholerae HCUF01]
gi|417821765|ref|ZP_12468379.1| GTP pyrophosphokinase [Vibrio cholerae HE39]
gi|417825669|ref|ZP_12472257.1| GTP pyrophosphokinase [Vibrio cholerae HE48]
gi|418335450|ref|ZP_12944359.1| GTP pyrophosphokinase [Vibrio cholerae HC-06A1]
gi|418339414|ref|ZP_12948304.1| GTP pyrophosphokinase [Vibrio cholerae HC-23A1]
gi|418346985|ref|ZP_12951738.1| GTP pyrophosphokinase [Vibrio cholerae HC-28A1]
gi|418350742|ref|ZP_12955473.1| GTP pyrophosphokinase [Vibrio cholerae HC-43A1]
gi|418355936|ref|ZP_12958655.1| GTP pyrophosphokinase [Vibrio cholerae HC-61A1]
gi|419827395|ref|ZP_14350894.1| relA/SpoT family protein [Vibrio cholerae CP1033(6)]
gi|419830884|ref|ZP_14354369.1| relA/SpoT family protein [Vibrio cholerae HC-1A2]
gi|419834569|ref|ZP_14358023.1| relA/SpoT family protein [Vibrio cholerae HC-61A2]
gi|419838141|ref|ZP_14361579.1| GTP pyrophosphokinase [Vibrio cholerae HC-46B1]
gi|421317796|ref|ZP_15768364.1| GTP pyrophosphokinase [Vibrio cholerae CP1032(5)]
gi|421322200|ref|ZP_15772752.1| GTP pyrophosphokinase [Vibrio cholerae CP1038(11)]
gi|421325997|ref|ZP_15776521.1| GTP pyrophosphokinase [Vibrio cholerae CP1041(14)]
gi|421329655|ref|ZP_15780165.1| GTP pyrophosphokinase [Vibrio cholerae CP1042(15)]
gi|421333611|ref|ZP_15784088.1| GTP pyrophosphokinase [Vibrio cholerae CP1046(19)]
gi|421337154|ref|ZP_15787615.1| GTP pyrophosphokinase [Vibrio cholerae CP1048(21)]
gi|421340581|ref|ZP_15791013.1| GTP pyrophosphokinase [Vibrio cholerae HC-20A2]
gi|421344309|ref|ZP_15794712.1| GTP pyrophosphokinase [Vibrio cholerae HC-43B1]
gi|421347819|ref|ZP_15798196.1| GTP pyrophosphokinase [Vibrio cholerae HC-46A1]
gi|421352155|ref|ZP_15802520.1| GTP pyrophosphokinase [Vibrio cholerae HE-25]
gi|421355134|ref|ZP_15805466.1| GTP pyrophosphokinase [Vibrio cholerae HE-45]
gi|422308384|ref|ZP_16395534.1| relA/SpoT family protein [Vibrio cholerae CP1035(8)]
gi|422897541|ref|ZP_16934980.1| GTP pyrophosphokinase [Vibrio cholerae HC-40A1]
gi|422903740|ref|ZP_16938704.1| GTP pyrophosphokinase [Vibrio cholerae HC-48A1]
gi|422907624|ref|ZP_16942417.1| GTP pyrophosphokinase [Vibrio cholerae HC-70A1]
gi|422914464|ref|ZP_16948968.1| GTP pyrophosphokinase [Vibrio cholerae HFU-02]
gi|422918283|ref|ZP_16952597.1| GTP pyrophosphokinase [Vibrio cholerae HC-02A1]
gi|422923744|ref|ZP_16956888.1| GTP pyrophosphokinase [Vibrio cholerae BJG-01]
gi|422926668|ref|ZP_16959680.1| GTP pyrophosphokinase [Vibrio cholerae HC-38A1]
gi|423145991|ref|ZP_17133584.1| GTP pyrophosphokinase [Vibrio cholerae HC-19A1]
gi|423150667|ref|ZP_17137980.1| GTP pyrophosphokinase [Vibrio cholerae HC-21A1]
gi|423154501|ref|ZP_17141665.1| GTP pyrophosphokinase [Vibrio cholerae HC-22A1]
gi|423157569|ref|ZP_17144661.1| GTP pyrophosphokinase [Vibrio cholerae HC-32A1]
gi|423161142|ref|ZP_17148080.1| GTP pyrophosphokinase [Vibrio cholerae HC-33A2]
gi|423165971|ref|ZP_17152690.1| GTP pyrophosphokinase [Vibrio cholerae HC-48B2]
gi|423732000|ref|ZP_17705301.1| relA/SpoT family protein [Vibrio cholerae HC-17A1]
gi|423736103|ref|ZP_17709293.1| relA/SpoT family protein [Vibrio cholerae HC-41B1]
gi|423771402|ref|ZP_17713566.1| relA/SpoT family protein [Vibrio cholerae HC-50A2]
gi|423823181|ref|ZP_17717189.1| relA/SpoT family protein [Vibrio cholerae HC-55C2]
gi|423857143|ref|ZP_17720992.1| relA/SpoT family protein [Vibrio cholerae HC-59A1]
gi|423884418|ref|ZP_17724585.1| relA/SpoT family protein [Vibrio cholerae HC-60A1]
gi|423896778|ref|ZP_17727610.1| relA/SpoT family protein [Vibrio cholerae HC-62A1]
gi|423931981|ref|ZP_17732003.1| relA/SpoT family protein [Vibrio cholerae HC-77A1]
gi|423957738|ref|ZP_17735481.1| relA/SpoT family protein [Vibrio cholerae HE-40]
gi|423985723|ref|ZP_17739037.1| relA/SpoT family protein [Vibrio cholerae HE-46]
gi|423998705|ref|ZP_17741955.1| GTP pyrophosphokinase [Vibrio cholerae HC-02C1]
gi|424003416|ref|ZP_17746490.1| GTP pyrophosphokinase [Vibrio cholerae HC-17A2]
gi|424007210|ref|ZP_17750179.1| GTP pyrophosphokinase [Vibrio cholerae HC-37A1]
gi|424010435|ref|ZP_17753368.1| GTP pyrophosphokinase [Vibrio cholerae HC-44C1]
gi|424017606|ref|ZP_17757432.1| GTP pyrophosphokinase [Vibrio cholerae HC-55B2]
gi|424020523|ref|ZP_17760304.1| GTP pyrophosphokinase [Vibrio cholerae HC-59B1]
gi|424025190|ref|ZP_17764839.1| GTP pyrophosphokinase [Vibrio cholerae HC-62B1]
gi|424028076|ref|ZP_17767677.1| GTP pyrophosphokinase [Vibrio cholerae HC-69A1]
gi|424587358|ref|ZP_18026936.1| GTP pyrophosphokinase [Vibrio cholerae CP1030(3)]
gi|424596012|ref|ZP_18035330.1| GTP pyrophosphokinase [Vibrio cholerae CP1040(13)]
gi|424599921|ref|ZP_18039099.1| GTP pyrophosphokinase [Vibrio Cholerae CP1044(17)]
gi|424602683|ref|ZP_18041822.1| GTP pyrophosphokinase [Vibrio cholerae CP1047(20)]
gi|424607617|ref|ZP_18046557.1| GTP pyrophosphokinase [Vibrio cholerae CP1050(23)]
gi|424611433|ref|ZP_18050271.1| GTP pyrophosphokinase [Vibrio cholerae HC-39A1]
gi|424614261|ref|ZP_18053045.1| GTP pyrophosphokinase [Vibrio cholerae HC-41A1]
gi|424618228|ref|ZP_18056898.1| GTP pyrophosphokinase [Vibrio cholerae HC-42A1]
gi|424623014|ref|ZP_18061517.1| GTP pyrophosphokinase [Vibrio cholerae HC-47A1]
gi|424625904|ref|ZP_18064363.1| GTP pyrophosphokinase [Vibrio cholerae HC-50A1]
gi|424630388|ref|ZP_18068670.1| GTP pyrophosphokinase [Vibrio cholerae HC-51A1]
gi|424634435|ref|ZP_18072533.1| GTP pyrophosphokinase [Vibrio cholerae HC-52A1]
gi|424637514|ref|ZP_18075520.1| GTP pyrophosphokinase [Vibrio cholerae HC-55A1]
gi|424641418|ref|ZP_18079298.1| GTP pyrophosphokinase [Vibrio cholerae HC-56A1]
gi|424645973|ref|ZP_18083707.1| GTP pyrophosphokinase [Vibrio cholerae HC-56A2]
gi|424649490|ref|ZP_18087150.1| GTP pyrophosphokinase [Vibrio cholerae HC-57A1]
gi|424653740|ref|ZP_18091119.1| GTP pyrophosphokinase [Vibrio cholerae HC-57A2]
gi|424657562|ref|ZP_18094846.1| GTP pyrophosphokinase [Vibrio cholerae HC-81A2]
gi|429886891|ref|ZP_19368429.1| GTP pyrophosphokinase [Vibrio cholerae PS15]
gi|440710676|ref|ZP_20891324.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae 4260B]
gi|443504790|ref|ZP_21071742.1| GTP pyrophosphokinase [Vibrio cholerae HC-64A1]
gi|443508696|ref|ZP_21075451.1| GTP pyrophosphokinase [Vibrio cholerae HC-65A1]
gi|443512534|ref|ZP_21079167.1| GTP pyrophosphokinase [Vibrio cholerae HC-67A1]
gi|443516093|ref|ZP_21082598.1| GTP pyrophosphokinase [Vibrio cholerae HC-68A1]
gi|443519884|ref|ZP_21086272.1| GTP pyrophosphokinase [Vibrio cholerae HC-71A1]
gi|443524779|ref|ZP_21090982.1| GTP pyrophosphokinase [Vibrio cholerae HC-72A2]
gi|443528409|ref|ZP_21094445.1| GTP pyrophosphokinase [Vibrio cholerae HC-78A1]
gi|443532363|ref|ZP_21098377.1| GTP pyrophosphokinase [Vibrio cholerae HC-7A1]
gi|443536177|ref|ZP_21102044.1| GTP pyrophosphokinase [Vibrio cholerae HC-80A1]
gi|443539705|ref|ZP_21105558.1| GTP pyrophosphokinase [Vibrio cholerae HC-81A1]
gi|449055108|ref|ZP_21733776.1| GTP pyrophosphokinase [Vibrio cholerae O1 str. Inaba G4222]
gi|5738224|gb|AAD50301.1|AF175295_1 ppGpp synthetase I [Vibrio cholerae]
gi|9657028|gb|AAF95593.1| GTP pyrophosphokinase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121628740|gb|EAX61207.1| GTP pyrophosphokinase [Vibrio cholerae V52]
gi|124115333|gb|EAY34153.1| GTP pyrophosphokinase [Vibrio cholerae 1587]
gi|124121376|gb|EAY40119.1| GTP pyrophosphokinase [Vibrio cholerae MZO-3]
gi|146315804|gb|ABQ20343.1| GTP pyrophosphokinase [Vibrio cholerae O395]
gi|150422423|gb|EDN14382.1| GTP pyrophosphokinase [Vibrio cholerae AM-19226]
gi|227010460|gb|ACP06672.1| GTP pyrophosphokinase [Vibrio cholerae M66-2]
gi|227014343|gb|ACP10553.1| GTP pyrophosphokinase [Vibrio cholerae O395]
gi|229335454|gb|EEO00936.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae
12129(1)]
gi|229338018|gb|EEO03035.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae bv.
albensis VL426]
gi|229341811|gb|EEO06813.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae TM
11079-80]
gi|229344141|gb|EEO09116.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae RC9]
gi|229349258|gb|EEO14215.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae TMA
21]
gi|229352281|gb|EEO17222.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae B33]
gi|229354994|gb|EEO19915.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae BX
330286]
gi|229369649|gb|ACQ60072.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae
MJ-1236]
gi|254845280|gb|EET23694.1| GTP pyrophosphokinase [Vibrio cholerae MO10]
gi|255735280|gb|EET90680.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholera CIRS
101]
gi|262024257|gb|EEY42948.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae RC27]
gi|262028292|gb|EEY46949.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae INDRE
91/1]
gi|297540885|gb|EFH76939.1| ppGpp synthetase I [Vibrio cholerae MAK 757]
gi|327484943|gb|AEA79350.1| GTP pyrophosphokinase(p)ppGpp synthetase I [Vibrio cholerae
LMA3984-4]
gi|340035802|gb|EGQ96780.1| GTP pyrophosphokinase [Vibrio cholerae HCUF01]
gi|340036952|gb|EGQ97928.1| GTP pyrophosphokinase [Vibrio cholerae HC-49A2]
gi|340039396|gb|EGR00371.1| GTP pyrophosphokinase [Vibrio cholerae HE39]
gi|340047154|gb|EGR08084.1| GTP pyrophosphokinase [Vibrio cholerae HE48]
gi|341619797|gb|EGS45599.1| GTP pyrophosphokinase [Vibrio cholerae HC-48A1]
gi|341619914|gb|EGS45701.1| GTP pyrophosphokinase [Vibrio cholerae HC-70A1]
gi|341620719|gb|EGS46485.1| GTP pyrophosphokinase [Vibrio cholerae HC-40A1]
gi|341635328|gb|EGS60046.1| GTP pyrophosphokinase [Vibrio cholerae HC-02A1]
gi|341636276|gb|EGS60978.1| GTP pyrophosphokinase [Vibrio cholerae HFU-02]
gi|341643547|gb|EGS67829.1| GTP pyrophosphokinase [Vibrio cholerae BJG-01]
gi|341645669|gb|EGS69798.1| GTP pyrophosphokinase [Vibrio cholerae HC-38A1]
gi|356416485|gb|EHH70116.1| GTP pyrophosphokinase [Vibrio cholerae HC-06A1]
gi|356417344|gb|EHH70962.1| GTP pyrophosphokinase [Vibrio cholerae HC-21A1]
gi|356422235|gb|EHH75718.1| GTP pyrophosphokinase [Vibrio cholerae HC-19A1]
gi|356427706|gb|EHH80947.1| GTP pyrophosphokinase [Vibrio cholerae HC-22A1]
gi|356428374|gb|EHH81601.1| GTP pyrophosphokinase [Vibrio cholerae HC-23A1]
gi|356429513|gb|EHH82729.1| GTP pyrophosphokinase [Vibrio cholerae HC-28A1]
gi|356439039|gb|EHH92039.1| GTP pyrophosphokinase [Vibrio cholerae HC-32A1]
gi|356443635|gb|EHH96454.1| GTP pyrophosphokinase [Vibrio cholerae HC-33A2]
gi|356445238|gb|EHH98047.1| GTP pyrophosphokinase [Vibrio cholerae HC-43A1]
gi|356449562|gb|EHI02308.1| GTP pyrophosphokinase [Vibrio cholerae HC-48B2]
gi|356452434|gb|EHI05113.1| GTP pyrophosphokinase [Vibrio cholerae HC-61A1]
gi|356647480|gb|AET27535.1| GTP pyrophosphokinase [Vibrio cholerae O1 str. 2010EL-1786]
gi|378795749|gb|AFC59220.1| GTP pyrophosphokinase [Vibrio cholerae IEC224]
gi|395916054|gb|EJH26884.1| GTP pyrophosphokinase [Vibrio cholerae CP1032(5)]
gi|395917835|gb|EJH28663.1| GTP pyrophosphokinase [Vibrio cholerae CP1041(14)]
gi|395917940|gb|EJH28767.1| GTP pyrophosphokinase [Vibrio cholerae CP1038(11)]
gi|395928189|gb|EJH38952.1| GTP pyrophosphokinase [Vibrio cholerae CP1042(15)]
gi|395929013|gb|EJH39766.1| GTP pyrophosphokinase [Vibrio cholerae CP1046(19)]
gi|395932253|gb|EJH42997.1| GTP pyrophosphokinase [Vibrio cholerae CP1048(21)]
gi|395939864|gb|EJH50546.1| GTP pyrophosphokinase [Vibrio cholerae HC-20A2]
gi|395940389|gb|EJH51070.1| GTP pyrophosphokinase [Vibrio cholerae HC-43B1]
gi|395942398|gb|EJH53074.1| GTP pyrophosphokinase [Vibrio cholerae HC-46A1]
gi|395952600|gb|EJH63214.1| GTP pyrophosphokinase [Vibrio cholerae HE-25]
gi|395954259|gb|EJH64872.1| GTP pyrophosphokinase [Vibrio cholerae HE-45]
gi|395957729|gb|EJH68258.1| GTP pyrophosphokinase [Vibrio cholerae HC-56A2]
gi|395958232|gb|EJH68732.1| GTP pyrophosphokinase [Vibrio cholerae HC-57A2]
gi|395960863|gb|EJH71218.1| GTP pyrophosphokinase [Vibrio cholerae HC-42A1]
gi|395970116|gb|EJH79923.1| GTP pyrophosphokinase [Vibrio cholerae HC-47A1]
gi|395972027|gb|EJH81648.1| GTP pyrophosphokinase [Vibrio cholerae CP1030(3)]
gi|395974486|gb|EJH84012.1| GTP pyrophosphokinase [Vibrio cholerae CP1047(20)]
gi|408006173|gb|EKG44345.1| GTP pyrophosphokinase [Vibrio cholerae HC-39A1]
gi|408010755|gb|EKG48604.1| GTP pyrophosphokinase [Vibrio cholerae HC-41A1]
gi|408011081|gb|EKG48917.1| GTP pyrophosphokinase [Vibrio cholerae HC-50A1]
gi|408017205|gb|EKG54723.1| GTP pyrophosphokinase [Vibrio cholerae HC-52A1]
gi|408022024|gb|EKG59253.1| GTP pyrophosphokinase [Vibrio cholerae HC-56A1]
gi|408022459|gb|EKG59668.1| GTP pyrophosphokinase [Vibrio cholerae HC-55A1]
gi|408030562|gb|EKG67217.1| GTP pyrophosphokinase [Vibrio cholerae CP1040(13)]
gi|408031260|gb|EKG67896.1| GTP pyrophosphokinase [Vibrio cholerae HC-57A1]
gi|408040647|gb|EKG76818.1| GTP pyrophosphokinase [Vibrio Cholerae CP1044(17)]
gi|408041951|gb|EKG78034.1| GTP pyrophosphokinase [Vibrio cholerae CP1050(23)]
gi|408051884|gb|EKG86957.1| GTP pyrophosphokinase [Vibrio cholerae HC-81A2]
gi|408053460|gb|EKG88474.1| GTP pyrophosphokinase [Vibrio cholerae HC-51A1]
gi|408608185|gb|EKK81588.1| relA/SpoT family protein [Vibrio cholerae CP1033(6)]
gi|408617654|gb|EKK90767.1| relA/SpoT family protein [Vibrio cholerae CP1035(8)]
gi|408620657|gb|EKK93669.1| relA/SpoT family protein [Vibrio cholerae HC-1A2]
gi|408622445|gb|EKK95429.1| relA/SpoT family protein [Vibrio cholerae HC-17A1]
gi|408629075|gb|EKL01788.1| relA/SpoT family protein [Vibrio cholerae HC-41B1]
gi|408632862|gb|EKL05290.1| relA/SpoT family protein [Vibrio cholerae HC-50A2]
gi|408634289|gb|EKL06552.1| relA/SpoT family protein [Vibrio cholerae HC-55C2]
gi|408639747|gb|EKL11554.1| relA/SpoT family protein [Vibrio cholerae HC-59A1]
gi|408640068|gb|EKL11869.1| relA/SpoT family protein [Vibrio cholerae HC-60A1]
gi|408648702|gb|EKL20037.1| relA/SpoT family protein [Vibrio cholerae HC-61A2]
gi|408653573|gb|EKL24735.1| relA/SpoT family protein [Vibrio cholerae HC-77A1]
gi|408654066|gb|EKL25209.1| relA/SpoT family protein [Vibrio cholerae HC-62A1]
gi|408656146|gb|EKL27244.1| relA/SpoT family protein [Vibrio cholerae HE-40]
gi|408663566|gb|EKL34435.1| relA/SpoT family protein [Vibrio cholerae HE-46]
gi|408844309|gb|EKL84441.1| GTP pyrophosphokinase [Vibrio cholerae HC-37A1]
gi|408845065|gb|EKL85186.1| GTP pyrophosphokinase [Vibrio cholerae HC-17A2]
gi|408852147|gb|EKL91991.1| GTP pyrophosphokinase [Vibrio cholerae HC-02C1]
gi|408856689|gb|EKL96384.1| GTP pyrophosphokinase [Vibrio cholerae HC-46B1]
gi|408858724|gb|EKL98396.1| GTP pyrophosphokinase [Vibrio cholerae HC-55B2]
gi|408863064|gb|EKM02560.1| GTP pyrophosphokinase [Vibrio cholerae HC-44C1]
gi|408866721|gb|EKM06098.1| GTP pyrophosphokinase [Vibrio cholerae HC-59B1]
gi|408869588|gb|EKM08884.1| GTP pyrophosphokinase [Vibrio cholerae HC-62B1]
gi|408878352|gb|EKM17362.1| GTP pyrophosphokinase [Vibrio cholerae HC-69A1]
gi|429226203|gb|EKY32343.1| GTP pyrophosphokinase [Vibrio cholerae PS15]
gi|439974005|gb|ELP50209.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae 4260B]
gi|443430869|gb|ELS73427.1| GTP pyrophosphokinase [Vibrio cholerae HC-64A1]
gi|443434699|gb|ELS80851.1| GTP pyrophosphokinase [Vibrio cholerae HC-65A1]
gi|443438592|gb|ELS88312.1| GTP pyrophosphokinase [Vibrio cholerae HC-67A1]
gi|443442629|gb|ELS95937.1| GTP pyrophosphokinase [Vibrio cholerae HC-68A1]
gi|443446518|gb|ELT03182.1| GTP pyrophosphokinase [Vibrio cholerae HC-71A1]
gi|443449232|gb|ELT09533.1| GTP pyrophosphokinase [Vibrio cholerae HC-72A2]
gi|443453228|gb|ELT17059.1| GTP pyrophosphokinase [Vibrio cholerae HC-78A1]
gi|443457753|gb|ELT25150.1| GTP pyrophosphokinase [Vibrio cholerae HC-7A1]
gi|443460680|gb|ELT31764.1| GTP pyrophosphokinase [Vibrio cholerae HC-80A1]
gi|443464835|gb|ELT39496.1| GTP pyrophosphokinase [Vibrio cholerae HC-81A1]
gi|448265150|gb|EMB02385.1| GTP pyrophosphokinase [Vibrio cholerae O1 str. Inaba G4222]
Length = 738
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 397 WLYKETGNKLQS 408
W YKE + +S
Sbjct: 354 WKYKEGSSAARS 365
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 109/215 (50%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA +L + S+EE +G EV KL+ GV ++ I QL NV G+
Sbjct: 74 TLVAALLFPIATSGVLDNESLEEGYGREVVKLIHGVEEMAAIGQL-------NVTMHGSE 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+R + P R A+E I+ LA+
Sbjct: 127 ASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKNEPDEVRRVAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ L+ R+ + I VS + +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----RRIVREQYIRDFVSDLRAEMKQ 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ + + +H+ S+ + + + + FD L D R
Sbjct: 242 SGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|409351741|ref|ZP_11234324.1| GTP pyrophosphokinase [Lactobacillus equicursoris CIP 110162]
gi|407876538|emb|CCK86382.1| GTP pyrophosphokinase [Lactobacillus equicursoris CIP 110162]
Length = 753
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 83/128 (64%), Gaps = 10/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 233 GIDYDISGRPKHIYSIYKKMVNKHKDFNEIYDLLAVRVIV---------PTVKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MHE AE+G+AAH
Sbjct: 284 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTKEMHEVAEYGVAAH 343
Query: 397 WLYKETGN 404
W YK GN
Sbjct: 344 WAYKR-GN 350
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 91/158 (57%), Gaps = 12/158 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV AG LHD V+D + I+E+FG +VA +V GV++L+ + H+
Sbjct: 69 DTVAAGFLHDTVEDTSVTNDDIKEKFGADVAFIVDGVTKLNKYE--YKSHKEF------- 119
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
A + R ML+ M D RV+L+KLADRLHNM T+ L P K R +A ETL I+ LA
Sbjct: 120 ---LAENHRKMLIAMAKDLRVILVKLADRLHNMHTLEHLRPDKQRRIAAETLDIYAPLAD 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
RLG+ +K ELED+ F + P + K+ + + + S R
Sbjct: 177 RLGIGTIKWELEDMSFHYINPDEYYKIVSMMDAKRSER 214
>gi|331005362|ref|ZP_08328746.1| GTP pyrophosphokinase [gamma proteobacterium IMCC1989]
gi|330420816|gb|EGG95098.1| GTP pyrophosphokinase [gamma proteobacterium IMCC1989]
Length = 748
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 82/126 (65%), Gaps = 9/126 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ + R K +YSI+ KM+RK++G +VYD RA+R++V P + CY +L
Sbjct: 259 NIDAEVYGRAKHIYSIWRKMQRKNIGFSEVYDIRAVRILV---------PTTKDCYEVLG 309
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW I EFDDYI PK +GY+SLHTAV GP +EVQIR+ MHE AE+G+ +H
Sbjct: 310 IVHTLWRNIPHEFDDYIAAPKENGYRSLHTAVVGPSQRVIEVQIRSHSMHEEAEYGVCSH 369
Query: 397 WLYKET 402
W YK T
Sbjct: 370 WRYKGT 375
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 86/150 (57%), Gaps = 8/150 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+ ++A +L+ V + ++ ++E +GD V +L+ GVS ++ I+QL R + + L
Sbjct: 85 EALIAAVLYRGVREGKINILDVKERYGDTVERLIYGVSGMAAISQL-----RNDSEESAL 139
Query: 72 GHEEAND---LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 128
G A+ +R ML+ MVDD RV LIKLA+R +R + + + VA+E I+
Sbjct: 140 GQRSADQTETVRKMLVSMVDDVRVALIKLAERTCAIRAVKDATDERKQKVAREVFDIYAP 199
Query: 129 LASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA RLG+ +K ELEDL F L+P ++ +
Sbjct: 200 LAHRLGIGHIKWELEDLGFRYLKPDDYKSI 229
>gi|408409949|ref|ZP_11181214.1| GTP pyrophosphokinase [Lactobacillus sp. 66c]
gi|407875894|emb|CCK83020.1| GTP pyrophosphokinase [Lactobacillus sp. 66c]
Length = 753
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 83/128 (64%), Gaps = 10/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 233 GIDYDISGRPKHIYSIYKKMVNKHKDFNEIYDLLAVRVIV---------PTVKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MHE AE+G+AAH
Sbjct: 284 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTKEMHEVAEYGVAAH 343
Query: 397 WLYKETGN 404
W YK GN
Sbjct: 344 WAYKR-GN 350
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 91/158 (57%), Gaps = 12/158 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV AG LHD V+D + I+E+FG +VA +V GV++L+ + H+
Sbjct: 69 DTVAAGFLHDTVEDTSVTNDDIKEKFGADVAFIVDGVTKLNKYE--YKSHKEF------- 119
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
A + R ML+ M D RV+L+KLADRLHNM T+ L P K R +A ETL I+ LA
Sbjct: 120 ---LAENHRKMLIAMAKDLRVILVKLADRLHNMHTLEHLRPDKQRRIAAETLDIYAPLAD 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
RLG+ +K ELED+ F + P + K+ + + + S R
Sbjct: 177 RLGIGTIKWELEDMSFHYINPDEYYKIVSMMDAKRSER 214
>gi|258405012|ref|YP_003197754.1| (p)ppGpp synthetase I SpoT/RelA [Desulfohalobium retbaense DSM
5692]
gi|257797239|gb|ACV68176.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfohalobium retbaense DSM
5692]
Length = 733
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 89/136 (65%), Gaps = 12/136 (8%)
Query: 269 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 328
++ + IPG +S R K LYSIF KM+R+ + + +V+D A RV++ ++
Sbjct: 223 ILDENSIPG---RVSGRQKHLYSIFHKMQRQGLSLDQVHDLVAFRVILK---------SV 270
Query: 329 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 388
+ CY++L ++H +W P+ G F DYI PK + YQSLHT V GPDG +E+QIRT++MHE
Sbjct: 271 RDCYAVLGLIHSIWKPVPGRFKDYISMPKANMYQSLHTTVIGPDGERIEIQIRTEEMHEI 330
Query: 389 AEHGLAAHWLYKETGN 404
E+G+AAHW YK+ N
Sbjct: 331 NEYGIAAHWKYKDGSN 346
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 110/179 (61%), Gaps = 15/179 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ AG+LHD ++D ++ +EE+FG+EVA++V GV+++ V +
Sbjct: 65 TIAAGLLHDTLEDTQSNVSDLEEQFGEEVAQIVEGVTKIG------------KVRFTSKE 112
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A ++R M+L M +D RV+++KLADRLHNMRT+ K R ++QET+ I+ LA+R
Sbjct: 113 EAQAENIRKMILAMAEDIRVIIVKLADRLHNMRTLQHQKGIKQRLISQETMEIYAPLANR 172
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
LGL+ +K +LED+ F L+P ++ ++++ + + + Y R+T ++ S LDE +
Sbjct: 173 LGLYRVKVQLEDISFQYLRPDVYYQIKSGVEQHQTLGQQ--YIERVTGLIQS-ILDENS 228
>gi|422911275|ref|ZP_16945901.1| GTP pyrophosphokinase [Vibrio cholerae HE-09]
gi|424660946|ref|ZP_18098193.1| GTP pyrophosphokinase [Vibrio cholerae HE-16]
gi|341631794|gb|EGS56671.1| GTP pyrophosphokinase [Vibrio cholerae HE-09]
gi|408049818|gb|EKG85007.1| GTP pyrophosphokinase [Vibrio cholerae HE-16]
Length = 738
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 397 WLYKETGNKLQS 408
W YKE + +S
Sbjct: 354 WKYKEGSSAARS 365
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA +L + S+EE +G EV KL+ GV ++ I QL NV G+
Sbjct: 74 TLVAALLFPIATSGVLDNESLEEGYGREVVKLIHGVEEMAAIGQL-------NVTMHGSE 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+R + P R A+E I+ LA+
Sbjct: 127 ASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKNEPDEVRRVAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ L+ R+ + I VS + +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----RRIVREQYIRDFVSDLRAEMKQ 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ + +H+ S+ + + + + FD L D R
Sbjct: 242 LGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|386074939|ref|YP_005989257.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Lai str. IPAV]
gi|353458729|gb|AER03274.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Lai str. IPAV]
Length = 674
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 81/124 (65%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPAPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 398 LYKE 401
+YKE
Sbjct: 346 IYKE 349
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDV++D S + +FG+++ LV GV+++S I +
Sbjct: 72 ICAGLLHDVIEDTEYSREDMIRDFGEDITDLVEGVTKISKIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HN+RT+ PP K R +AQETL ++ +A RL
Sbjct: 120 EAAENIRKIIVATIKDIRVILIKLADKTHNLRTLSFQPPEKQRRIAQETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G++ +K+ELEDL F +L P +++++ ++ S S R
Sbjct: 180 GIYKIKSELEDLAFQILNPDEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPEGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|297544507|ref|YP_003676809.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842282|gb|ADH60798.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 719
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 91/165 (55%), Gaps = 12/165 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKSFDQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 397 WLYKE---TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 438
W YKE T +K S +E L + L DLF
Sbjct: 338 WKYKEGKTTEDKFDQKLSWLRQLLEWQKELKDAKEFMETLKIDLF 382
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 13/171 (7%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ T+ AG+LHDV++D + + E+FG E+A LV GV++L I + V Q
Sbjct: 62 ITTIAAGLLHDVIEDTDVTYEQLLEKFGKEIADLVDGVTKLGKI------EYKSKVEQ-- 113
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A ++R ML+ M D RV+LIKLADRLHNMRT+ LPP K + A+ETL I+ +A
Sbjct: 114 ----QAENMRKMLIAMAKDIRVILIKLADRLHNMRTLKYLPPDKQKEKAEETLEIYAPIA 169
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
RLG+ +K ELEDLC L P + + +A+ R + ITTI
Sbjct: 170 HRLGISKIKWELEDLCLRYLHPDEYYDLVEKVAAKRKEREEL-IQNIITTI 219
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 593 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 652
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDKFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 653 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 698
+ L +GST D A + E L VNG+LV N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPVDFAYSIHTEIGHRLNGAKVNGKLVPINYQLKNGDIVEILV 445
>gi|110834484|ref|YP_693343.1| GTP pyrophosphokinase [Alcanivorax borkumensis SK2]
gi|110647595|emb|CAL17071.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) (ppGpp
synthetase I) [Alcanivorax borkumensis SK2]
Length = 746
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 87/134 (64%), Gaps = 11/134 (8%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
I G EV + R K +YSI+ KM++K + +VYD RA+R++V P ++ CY+
Sbjct: 255 IGGAEV--NGRAKHIYSIWRKMQKKHLDFGEVYDVRAVRILV---------PEVRDCYAA 303
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L +VH LW + EFDDYI +PK +GYQSLHTAV GP+ LEVQIRT MHE AE G+
Sbjct: 304 LGVVHSLWQHVPKEFDDYIASPKGNGYQSLHTAVVGPERKMLEVQIRTFDMHEEAELGVC 363
Query: 395 AHWLYKETGNKLQS 408
AHW YKE K +S
Sbjct: 364 AHWRYKEGAKKGKS 377
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 86/149 (57%), Gaps = 7/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D + A IL+ V + +L +E+EFG EVA L+ GV R++ I+ L R+ L
Sbjct: 81 DVLPAAILYRAVREGQVTLLEVEKEFGPEVANLIEGVLRMAAISTSLNPTRK-----AVL 135
Query: 72 GHEEA--NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
G ++ +++R ML+ MVDD RV L+KLA+R +R + P + VAQE I+ L
Sbjct: 136 GQQDGQLDNMRKMLVAMVDDVRVALVKLAERTVIIRAVKESTPERQSKVAQEIFDIYAPL 195
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A RLG+ LK ELEDL F LQ ++K+
Sbjct: 196 AHRLGVGQLKWELEDLSFRYLQSGAYKKI 224
>gi|385340582|ref|YP_005894454.1| GTP diphosphokinase [Neisseria meningitidis G2136]
gi|416201399|ref|ZP_11619818.1| GTP diphosphokinase [Neisseria meningitidis 961-5945]
gi|421557748|ref|ZP_16003647.1| GTP pyrophosphokinase [Neisseria meningitidis 80179]
gi|433467814|ref|ZP_20425264.1| relA/SpoT family protein [Neisseria meningitidis 87255]
gi|325142894|gb|EGC65257.1| GTP diphosphokinase [Neisseria meningitidis 961-5945]
gi|325198826|gb|ADY94282.1| GTP diphosphokinase [Neisseria meningitidis G2136]
gi|402333911|gb|EJU69207.1| GTP pyrophosphokinase [Neisseria meningitidis 80179]
gi|432201699|gb|ELK57775.1| relA/SpoT family protein [Neisseria meningitidis 87255]
Length = 737
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R+++ + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILID---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALP--PAKARAVAQETLLIWCSL 129
++A +R MLL MV D RVVLIKLA R ++ + +P P K RAVA+ETL I+ L
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNVPDNPEK-RAVAKETLDIFAPL 194
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+RLG+W LK +LEDL F +P+ +R++
Sbjct: 195 ANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|313667882|ref|YP_004048166.1| GTP pyrophosphokinase [Neisseria lactamica 020-06]
gi|313005344|emb|CBN86777.1| GTP pyrophosphokinase [Neisseria lactamica 020-06]
Length = 737
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + +R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFVRVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
+A +R MLL MV D RVVLIKLA R ++ + +P + + RAVA+ETL I+ LA
Sbjct: 138 --RQAEIMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNVPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPERYREI 223
>gi|289578226|ref|YP_003476853.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter italicus Ab9]
gi|289527939|gb|ADD02291.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter italicus Ab9]
Length = 719
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 91/165 (55%), Gaps = 12/165 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKSFDQIYDLLAVRIIVN---------TVKECYGVLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 397 WLYKE---TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 438
W YKE T +K S +E L + L DLF
Sbjct: 338 WKYKEGKTTEDKFDQKLSWLRQLLEWQKELKDAKEFMETLKIDLF 382
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 13/171 (7%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ T+ AG+LHDV++D + + E+FG E+A LV GV++L I + V Q
Sbjct: 62 ITTIAAGLLHDVIEDTDVTYEQLLEKFGKEIADLVDGVTKLGKI------EYKSKVEQ-- 113
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A ++R ML+ M D RV+LIKLADRLHNMRT+ LPP K + A+ETL I+ +A
Sbjct: 114 ----QAENMRKMLIAMAKDIRVILIKLADRLHNMRTLKYLPPDKQKEKAEETLEIYAPIA 169
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
RLG+ +K ELEDLC L P + + +A+ R + ITTI
Sbjct: 170 HRLGISKIKWELEDLCLRYLHPDEYYDLVEKVAAKRKEREEL-IQNIITTI 219
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 593 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 652
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDKFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 653 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 698
+ L +GST D A + E L VNG+LV N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPVDFAYSIHTEIGHRLNGAKVNGKLVPINYQLKNGDIVEILV 445
>gi|126700359|ref|YP_001089256.1| GTP pyrophosphokinase (RelA/SpoT) [Clostridium difficile 630]
gi|254976339|ref|ZP_05272811.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-66c26]
gi|255093724|ref|ZP_05323202.1| putative GTP pyrophosphokinase [Clostridium difficile CIP 107932]
gi|255101915|ref|ZP_05330892.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-63q42]
gi|255307784|ref|ZP_05351955.1| putative GTP pyrophosphokinase [Clostridium difficile ATCC 43255]
gi|255315476|ref|ZP_05357059.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-76w55]
gi|255518139|ref|ZP_05385815.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-97b34]
gi|255651255|ref|ZP_05398157.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-37x79]
gi|260684319|ref|YP_003215604.1| GTP pyrophosphokinase [Clostridium difficile CD196]
gi|260687978|ref|YP_003219112.1| GTP pyrophosphokinase [Clostridium difficile R20291]
gi|296452442|ref|ZP_06894143.1| GTP diphosphokinase [Clostridium difficile NAP08]
gi|296877791|ref|ZP_06901817.1| GTP diphosphokinase [Clostridium difficile NAP07]
gi|306521098|ref|ZP_07407445.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-32g58]
gi|384361963|ref|YP_006199815.1| GTP pyrophosphokinase [Clostridium difficile BI1]
gi|423081063|ref|ZP_17069675.1| GTP diphosphokinase [Clostridium difficile 002-P50-2011]
gi|423085064|ref|ZP_17073522.1| GTP diphosphokinase [Clostridium difficile 050-P50-2011]
gi|423089842|ref|ZP_17078191.1| GTP diphosphokinase [Clostridium difficile 70-100-2010]
gi|115251796|emb|CAJ69631.1| GTP pyrophosphokinase (RelA/SpoT) [Clostridium difficile 630]
gi|260210482|emb|CBA64959.1| putative GTP pyrophosphokinase [Clostridium difficile CD196]
gi|260213995|emb|CBE06110.1| putative GTP pyrophosphokinase [Clostridium difficile R20291]
gi|296258772|gb|EFH05666.1| GTP diphosphokinase [Clostridium difficile NAP08]
gi|296431242|gb|EFH17063.1| GTP diphosphokinase [Clostridium difficile NAP07]
gi|357550919|gb|EHJ32724.1| GTP diphosphokinase [Clostridium difficile 050-P50-2011]
gi|357551372|gb|EHJ33162.1| GTP diphosphokinase [Clostridium difficile 002-P50-2011]
gi|357557606|gb|EHJ39140.1| GTP diphosphokinase [Clostridium difficile 70-100-2010]
Length = 735
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 78/117 (66%), Gaps = 9/117 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K YSI+ KM++K +++D A+R++V + ++ CY++L IVH LW P
Sbjct: 238 RPKHFYSIYRKMQKKHKTFEEIFDLTAVRILVDN---------VKDCYAVLGIVHTLWRP 288
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
I G F DYI PKP+ YQSLHT V GPDG LE+QIRT +MH AE+G+AAHW YKE
Sbjct: 289 IPGRFKDYIAMPKPNMYQSLHTTVVGPDGEPLEIQIRTHEMHNIAENGIAAHWKYKE 345
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 89/143 (62%), Gaps = 12/143 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ AG+LHDVV+D + I++EFG EVA LV GV++L I ++R Q
Sbjct: 65 IETITAGLLHDVVEDTEYTYEDIKKEFGKEVADLVDGVTKLGQI-----KYRSKEETQ-- 117
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +LR M L M D RV+LIKLADRLHNMRT+ +PP KA+ A+ETL I+ +A
Sbjct: 118 -----SENLRKMFLAMAKDIRVILIKLADRLHNMRTLKYMPPEKAKYKAKETLEIYGGIA 172
Query: 131 SRLGLWALKAELEDLCFAVLQPQ 153
RLG+ +K ELED + P+
Sbjct: 173 HRLGISKIKWELEDRALRFMDPE 195
Score = 39.3 bits (90), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 592 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 651
+S E+ + K++ LR M+ WE+ L+ + N V V P G+
Sbjct: 348 SSKESKVEEKLQWLRQMMEWEKDLKDPQEFMDALKEDVFNSQ---------VYVFTPKGD 398
Query: 652 IMRLRSGSTAADAAMKV--GLEGKLV--LVNGQLVLPNTELKDGDIVEV 696
++ L + ST D A +V + K V ++G++V + +L++G+IVEV
Sbjct: 399 VIELPAESTPIDFAYRVHTNVGNKCVGAKIDGRIVPIDYKLQNGNIVEV 447
>gi|257064877|ref|YP_003144549.1| (p)ppGpp synthetase, RelA/SpoT family [Slackia heliotrinireducens
DSM 20476]
gi|256792530|gb|ACV23200.1| (p)ppGpp synthetase, RelA/SpoT family [Slackia heliotrinireducens
DSM 20476]
Length = 789
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ ++ R K LYSI KM ++ G ++YD A+R++V +++ CYS+L
Sbjct: 274 NIKAHIAGRPKHLYSINQKMINREKGFSEIYDLIAVRIIV---------ESVKDCYSVLG 324
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH LW P+ G F DYI PK +GYQSLHT V GP G LEVQIRT++MH +E+G+AAH
Sbjct: 325 SVHSLWHPMPGRFKDYIAMPKANGYQSLHTTVIGPAGRPLEVQIRTEEMHRLSEYGVAAH 384
Query: 397 WLYKETGN 404
W YKE GN
Sbjct: 385 WRYKEKGN 392
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 90/157 (57%), Gaps = 12/157 (7%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
LI + + VDT+ A +LHD V+D + + + F + VA LV GV++++
Sbjct: 100 LILADLRMDVDTLCAALLHDTVEDTDVTHKDLLDTFNESVANLVEGVTKIT--------- 150
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 121
V +L E+A +R M + M D RV++IKLADRLHNMRT+ AL + A E
Sbjct: 151 ---QVEVESLTDEQAATIRKMFVAMSHDIRVIVIKLADRLHNMRTLSALREDRRIFKAHE 207
Query: 122 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
TL I+ +A RLG+ ++K ELEDL F L P F+++
Sbjct: 208 TLEIYAPIAHRLGIGSIKWELEDLSFYYLDPARFKQI 244
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 15/107 (14%)
Query: 595 EASINNKVRLLRTMLRWEEQLR-SEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIM 653
+A+ + ++ LR M+ W+++ + S L + K+ + P EV + P GE+M
Sbjct: 396 DAAFDKQIAWLRQMVDWQDETQDSREFLSELKV---------DLAPSEVFVFT-PAGEVM 445
Query: 654 RLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 696
LR+GST D A V E G + VNG +V + +LK GD VE+
Sbjct: 446 SLRAGSTPIDFAYAVHTEVGNHCVGAKVNGDIVPLSYQLKMGDRVEI 492
>gi|385323657|ref|YP_005878096.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase; ppGpp
synthetase I; (P)ppGpp synthetase) [Neisseria
meningitidis 8013]
gi|421545027|ref|ZP_15991094.1| GTP pyrophosphokinase [Neisseria meningitidis NM140]
gi|421547117|ref|ZP_15993156.1| GTP pyrophosphokinase [Neisseria meningitidis NM183]
gi|421553323|ref|ZP_15999288.1| GTP pyrophosphokinase [Neisseria meningitidis NM576]
gi|261392044|emb|CAX49536.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase; ppGpp
synthetase I; (P)ppGpp synthetase) [Neisseria
meningitidis 8013]
gi|402322089|gb|EJU57559.1| GTP pyrophosphokinase [Neisseria meningitidis NM183]
gi|402322314|gb|EJU57778.1| GTP pyrophosphokinase [Neisseria meningitidis NM140]
gi|402328455|gb|EJU63826.1| GTP pyrophosphokinase [Neisseria meningitidis NM576]
Length = 737
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R+++ + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILID---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|421550047|ref|ZP_15996054.1| GTP diphosphokinase [Neisseria meningitidis 69166]
gi|433472066|ref|ZP_20429445.1| relA/SpoT family protein [Neisseria meningitidis 68094]
gi|433478244|ref|ZP_20435558.1| relA/SpoT family protein [Neisseria meningitidis 70012]
gi|433526668|ref|ZP_20483292.1| relA/SpoT family protein [Neisseria meningitidis 69096]
gi|433539537|ref|ZP_20496006.1| relA/SpoT family protein [Neisseria meningitidis 70030]
gi|402330961|gb|EJU66304.1| GTP diphosphokinase [Neisseria meningitidis 69166]
gi|432206991|gb|ELK62989.1| relA/SpoT family protein [Neisseria meningitidis 68094]
gi|432214017|gb|ELK69926.1| relA/SpoT family protein [Neisseria meningitidis 70012]
gi|432259186|gb|ELL14459.1| relA/SpoT family protein [Neisseria meningitidis 69096]
gi|432271924|gb|ELL27042.1| relA/SpoT family protein [Neisseria meningitidis 70030]
Length = 737
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R+++ + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILID---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|254805484|ref|YP_003083705.1| GTP pyrophosphokinase [Neisseria meningitidis alpha14]
gi|254669026|emb|CBA07452.1| GTP pyrophosphokinase [Neisseria meningitidis alpha14]
Length = 737
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R+++ + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILID---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|433512854|ref|ZP_20469654.1| relA/SpoT family protein [Neisseria meningitidis 63049]
gi|432249680|gb|ELL05083.1| relA/SpoT family protein [Neisseria meningitidis 63049]
Length = 737
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R+++ + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILID---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|70726288|ref|YP_253202.1| GTP pyrophosphokinase [Staphylococcus haemolyticus JCSC1435]
gi|68447012|dbj|BAE04596.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) (PPGPP
synthetase I) ((P)PPGPP synthetase) [Staphylococcus
haemolyticus JCSC1435]
Length = 729
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 94/157 (59%), Gaps = 21/157 (13%)
Query: 278 MEVT--LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 335
M++T +S R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 232 MDITGEISGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAIL 282
Query: 336 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 395
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AA
Sbjct: 283 GLVHTLWKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAA 342
Query: 396 HWLYKETG----------NKLQSISSMDESDIEASSS 422
HW YKE NKL + + E+D +S +
Sbjct: 343 HWAYKEGKTVNEKNQDFQNKLNWLKELAEADHTSSDA 379
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 87/145 (60%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + +++ F +E+A++V GV++L + ++R +
Sbjct: 70 TIVAGFLHDVIEDTPYTFDDVKDMFNEEIARIVDGVTKLKKV-----KYR-------SKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+ K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMAREKQVRISKETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQP-QIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDSVQYFR 202
>gi|387872445|ref|YP_005803827.1| GTP pyrophosphokinase [Erwinia pyrifoliae DSM 12163]
gi|283479540|emb|CAY75456.1| GTP pyrophosphokinase [Erwinia pyrifoliae DSM 12163]
Length = 749
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 249 GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIV---------AERLQDCYGALG 299
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 300 IVHTLYRHLPNEFDDYVANPKPNGYQSIHTVVLGPKGKTVEIQIRTRQMHEDAELGVAAH 359
Query: 397 WLYKETG 403
W YKE G
Sbjct: 360 WKYKEGG 366
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +L + D S +E +FG + LV GV + I QL H ++
Sbjct: 79 ETLSAALLFPLADAGVVSEEVLEAQFGQSIVSLVHGVRDMDAIRQLKATH------NDSM 132
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E+ +++R MLL MV+D R V+IKLA+R+ ++R + P + A+E I+ LA+
Sbjct: 133 ASEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLAN 192
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ LK ELED CF L P+ ++++
Sbjct: 193 RLGIGQLKWELEDFCFRYLHPEEYKRI 219
>gi|261399996|ref|ZP_05986121.1| GTP diphosphokinase [Neisseria lactamica ATCC 23970]
gi|269210463|gb|EEZ76918.1| GTP diphosphokinase [Neisseria lactamica ATCC 23970]
Length = 737
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
+A +R MLL MV D RVVLIKLA R ++ + +P + + RAVA+ETL I+ LA
Sbjct: 138 --RQAEIMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNVPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|421563906|ref|ZP_16009719.1| GTP-pyrophosphokinase [Neisseria meningitidis NM2795]
gi|402339787|gb|EJU74998.1| GTP-pyrophosphokinase [Neisseria meningitidis NM2795]
Length = 737
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R+++ + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILID---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSTEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|433469858|ref|ZP_20427268.1| relA/SpoT family protein [Neisseria meningitidis 98080]
gi|432201927|gb|ELK58000.1| relA/SpoT family protein [Neisseria meningitidis 98080]
Length = 737
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R+++ + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILID---------TVPECYTTLGIVHSL 308
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 402 TG 403
G
Sbjct: 369 GG 370
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 79 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 137
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 138 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 195
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 196 NRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|433500277|ref|ZP_20457266.1| ACT domain protein [Neisseria meningitidis NM174]
gi|432237165|gb|ELK92764.1| ACT domain protein [Neisseria meningitidis NM174]
Length = 538
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 9/126 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+ ++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L I
Sbjct: 55 IHFEVAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGI 105
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW
Sbjct: 106 VHSLWQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHW 165
Query: 398 LYKETG 403
YKE G
Sbjct: 166 RYKEGG 171
>gi|418029539|ref|ZP_12668077.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1632]
gi|354689845|gb|EHE89818.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1632]
Length = 753
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 94/156 (60%), Gaps = 14/156 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 233 GIKYDISGRPKHIYSIYKKMVNKHKNFNEIYDLLAVRVIV---------PTVKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 284 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAH 343
Query: 397 WLYKETGNKLQSISSMDESDIEASS---SLSKDTDD 429
W YK GN Q + + ++ S L KD+ D
Sbjct: 344 WAYKR-GN-FQGVDEKEGGALDISREILELQKDSSD 377
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 87/147 (59%), Gaps = 12/147 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV AG LHD V+D + I+E+FG +VA +V GV++L+ + H+
Sbjct: 69 DTVAAGFLHDTVEDTSVTNDDIKEKFGADVAFIVDGVTKLNKYE--YKSHKEF------- 119
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
A + R ML+ M D RV+L+KLADRLHNM T+ L P K R +A ETL I+ LA
Sbjct: 120 ---LAENHRKMLIAMAKDLRVILVKLADRLHNMHTLEHLRPDKQRRIAAETLDIYAPLAD 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K +LED+ F + P+ + K+
Sbjct: 177 RLGIGTIKWKLEDMSFHYMNPEAYYKI 203
>gi|227879058|ref|ZP_03996948.1| GTP diphosphokinase [Lactobacillus crispatus JV-V01]
gi|256843052|ref|ZP_05548540.1| ppGpp synthetase [Lactobacillus crispatus 125-2-CHN]
gi|256850296|ref|ZP_05555725.1| ppGpp synthetase [Lactobacillus crispatus MV-1A-US]
gi|262046025|ref|ZP_06018989.1| ppGpp synthetase [Lactobacillus crispatus MV-3A-US]
gi|293381310|ref|ZP_06627313.1| GTP diphosphokinase [Lactobacillus crispatus 214-1]
gi|312977236|ref|ZP_07788984.1| GTP diphosphokinase [Lactobacillus crispatus CTV-05]
gi|423318875|ref|ZP_17296752.1| RelA/SpoT family protein [Lactobacillus crispatus FB049-03]
gi|227861353|gb|EEJ68982.1| GTP diphosphokinase [Lactobacillus crispatus JV-V01]
gi|256614472|gb|EEU19673.1| ppGpp synthetase [Lactobacillus crispatus 125-2-CHN]
gi|256712933|gb|EEU27925.1| ppGpp synthetase [Lactobacillus crispatus MV-1A-US]
gi|260573984|gb|EEX30540.1| ppGpp synthetase [Lactobacillus crispatus MV-3A-US]
gi|290922126|gb|EFD99125.1| GTP diphosphokinase [Lactobacillus crispatus 214-1]
gi|310895667|gb|EFQ44733.1| GTP diphosphokinase [Lactobacillus crispatus CTV-05]
gi|405591738|gb|EKB65207.1| RelA/SpoT family protein [Lactobacillus crispatus FB049-03]
Length = 746
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 175/393 (44%), Gaps = 118/393 (30%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV AG LHD V+D + ++E+FG++VA +V G ++ +N+ +
Sbjct: 69 DTVAAGFLHDTVEDTPVTNDELKEKFGEDVAFIVDG---VTKLNKYEYK----------- 114
Query: 72 GHEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
H+E A + R ML+ M AQ+ +I L
Sbjct: 115 SHQEFLAENHRKMLIAM--------------------------------AQDLRVIMVKL 142
Query: 130 ASRL-GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP-RNRVGYSRRITTIVSSPPL 187
A RL + L+ L+P R++ ++ +++P +R+G I TI
Sbjct: 143 ADRLHNMHTLQH---------LRPDKQRRIASETMDIYAPLADRLG----IGTI------ 183
Query: 188 DERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVV 247
+ +D SF H L+ + V D+ R +R K++ D K+ +
Sbjct: 184 --KWELEDMSF-----HYLNPEAYYRIVNLMDV--KRSQREKYIADTIKTLKK------- 227
Query: 248 QDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVY 307
L L G++ + R K +YSI+ KM K ++Y
Sbjct: 228 -----TLNEL-------------------GIKYEIYGRPKHIYSIYKKMVNKHKDFDEIY 263
Query: 308 DARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTA 367
D A+RV+V + ++ CY++L VH W P+ G F DYI PK +GYQSLHT
Sbjct: 264 DLLAVRVIVKN---------VRDCYAVLGAVHTEWKPMPGRFKDYIAMPKVNGYQSLHTT 314
Query: 368 VQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 400
+ GP G LE+QIRT++MH+ AE+G+AAHW YK
Sbjct: 315 IIGPGGRPLEIQIRTEQMHKVAEYGVAAHWAYK 347
>gi|429727583|ref|ZP_19262348.1| putative GTP diphosphokinase [Peptostreptococcus anaerobius VPI
4330]
gi|429151973|gb|EKX94811.1| putative GTP diphosphokinase [Peptostreptococcus anaerobius VPI
4330]
Length = 739
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 85/132 (64%), Gaps = 10/132 (7%)
Query: 284 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 343
R K YSI+ KM++K+ ++YD A+R++V ++ CY +L +VH LW
Sbjct: 237 GRPKHFYSIYRKMKKKNKSFDEIYDLTAVRIIV---------DTVKDCYGVLGVVHTLWK 287
Query: 344 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 403
P+ G F DYI PKP+ YQSLHT V G DG +E+QIRT++MH+ AE+G AAHW YKE G
Sbjct: 288 PMPGRFKDYIAMPKPNMYQSLHTTVIGADGEPVEIQIRTKEMHQVAEYGFAAHWKYKE-G 346
Query: 404 NKLQSISSMDES 415
+ +S++DE
Sbjct: 347 VTDKDVSALDEK 358
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 85/145 (58%), Gaps = 12/145 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+DT+ GILHDVV+D IEE FG +VA LV GV++L I + T
Sbjct: 65 MDTICGGILHDVVEDTEYEESDIEEMFGKDVAVLVDGVTKLGKIQYM------------T 112
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
++ +LR M L M D RV+LIKLADRLHNMRT+ + KAR A+ETL I+ +A
Sbjct: 113 KEESQSENLRKMFLAMAKDMRVILIKLADRLHNMRTLEYMDSNKARYKARETLDIYAGIA 172
Query: 131 SRLGLWALKAELEDLCFAVLQPQIF 155
RLG+ +K ELEDL L P+ +
Sbjct: 173 HRLGIQTIKWELEDLSLRFLDPEGY 197
Score = 43.5 bits (101), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 596 ASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 655
++++ K++ R M+ WE+ ++ + D V+ +V + P GE++ L
Sbjct: 353 SALDEKLQWFRMMMEWEKDVKDPHEF--------LDALKDDVLTYQVYVFT-PQGEVIEL 403
Query: 656 RSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
+GST D A KVG VNG++V + LK+GDIVE+
Sbjct: 404 PTGSTTIDFAYRIHSKVGNSCVGAKVNGRIVPLDHILKNGDIVEI 448
>gi|262404763|ref|ZP_06081318.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio sp. RC586]
gi|262349795|gb|EEY98933.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio sp. RC586]
Length = 738
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 397 WLYKE 401
W YKE
Sbjct: 354 WKYKE 358
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA +L + S+EE +G EV KL+ GV ++ I QL NV G+
Sbjct: 74 TLVAALLFPIATSGVLDNESLEESYGREVLKLILGVEEMAAIGQL-------NVTMHGSE 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+R + P R A+E I+ LA+
Sbjct: 127 ASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKNEPDEVRRIAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ L+ R+ + I VS + +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----RRIVREQYIRDFVSDLRAEMKQ 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ + +H+ S+ + + + + FD L D R
Sbjct: 242 LGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|91227845|ref|ZP_01262018.1| GTP pyrophosphokinase [Vibrio alginolyticus 12G01]
gi|91188355|gb|EAS74651.1| GTP pyrophosphokinase [Vibrio alginolyticus 12G01]
Length = 739
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVA 351
Query: 395 AHWLYKE 401
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V + +EE++ E+ KL+ GV ++ I QL NVN +G+
Sbjct: 74 TLVAAQLFPLVSSGAFNREILEEKYSKEIIKLIDGVEEMAAIGQL-------NVNMEGSA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ LK E+ED F QP+ ++++ L+
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPETYKQIAKQLS 218
>gi|407796127|ref|ZP_11143083.1| GTP pyrophosphokinase [Salimicrobium sp. MJ3]
gi|407019481|gb|EKE32197.1| GTP pyrophosphokinase [Salimicrobium sp. MJ3]
Length = 733
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 85/138 (61%), Gaps = 10/138 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E L R K LYSI+ KM + +++YD A+R++V +I+ CY++L
Sbjct: 233 NIEADLDGRPKHLYSIYKKMVLQSKQFNEIYDLLAVRILVN---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNLYQSLHTTVIGPKGDPLEVQIRTHDMHEIAEYGIAAH 343
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE G + S S +E
Sbjct: 344 WAYKE-GKQSGSTQSFEE 360
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 84/147 (57%), Gaps = 12/147 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ +G LHD V+D ++ ++ F +EVA LV GV++L I +
Sbjct: 69 ETIASGFLHDTVEDTGVTVEDLKVTFNEEVAMLVDGVTKLGKIKYKSKEE---------- 118
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA
Sbjct: 119 --QQAENHRKMFVAMAKDLRVILIKLADRLHNMRTLKHLPAEKQRRISNETLEIFAPLAH 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELED L PQ + ++
Sbjct: 177 RLGISTIKWELEDTALRYLNPQQYYRI 203
>gi|300718122|ref|YP_003742925.1| GTP pyrophosphokinase [Erwinia billingiae Eb661]
gi|299063958|emb|CAX61078.1| GTP pyrophosphokinase [Erwinia billingiae Eb661]
Length = 742
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKSLTFDELFDVRAVRIV---------AERLQDCYGALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +EVQIRT++MHE AE G+AAH
Sbjct: 295 IVHTLYRHLPSEFDDYVANPKPNGYQSIHTVVLGPKGKTVEVQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKETG 403
W YKE G
Sbjct: 355 WKYKEGG 361
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 15/175 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+++ A +L + + S +EE FG + LV GV + I QL H ++
Sbjct: 74 ESLRAALLFPLANTHVVSEEVLEEHFGKAIVSLVHGVRDMDAIRQLKATH------NDSM 127
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E+ +++R MLL MV+D R V+IKLA+R+ ++R + P + A+E I+ LA+
Sbjct: 128 APEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLAN 187
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIVSS 184
RLG+ LK ELED CF L P +++ +A + R +R GY I T V S
Sbjct: 188 RLGIGQLKWELEDFCFRYLHPDEYKR----IAKLLHERRIDREGY---IDTFVQS 235
>gi|269965228|ref|ZP_06179362.1| GTP pyrophosphokinase [Vibrio alginolyticus 40B]
gi|269830214|gb|EEZ84441.1| GTP pyrophosphokinase [Vibrio alginolyticus 40B]
Length = 739
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVA 351
Query: 395 AHWLYKE 401
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 88/152 (57%), Gaps = 8/152 (5%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V + ++EE++ E+ KL+ GV ++ I QL NVN +G+
Sbjct: 74 TLVAAQLFPLVSSGAFNRETLEEKYSKEIIKLIDGVEEMAAIGQL-------NVNMEGSA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ LK E+ED F QP+ ++++ L+
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPETYKQIAKQLS 218
>gi|449143782|ref|ZP_21774605.1| GTP pyrophosphokinase(p)ppGpp synthetase I [Vibrio mimicus CAIM
602]
gi|449080780|gb|EMB51691.1| GTP pyrophosphokinase(p)ppGpp synthetase I [Vibrio mimicus CAIM
602]
Length = 738
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 397 WLYKE 401
W YKE
Sbjct: 354 WKYKE 358
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA +L + S+EE +G EV KL+ GV ++ I QL NV G+
Sbjct: 74 TLVAALLFPIATSGVLDNESLEESYGREVLKLIHGVEEMAAIGQL-------NVTMHGSE 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+R + P R A+E I+ LA+
Sbjct: 127 ASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKNEPDEVRRIAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ L+ R+ + I VS + +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----RRIVREQYIRDFVSDLRAEMKQ 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ + +H+ S+ + + + + FD L D R
Sbjct: 242 LGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|355576488|ref|ZP_09045743.1| hypothetical protein HMPREF1008_01720 [Olsenella sp. oral taxon 809
str. F0356]
gi|354816725|gb|EHF01240.1| hypothetical protein HMPREF1008_01720 [Olsenella sp. oral taxon 809
str. F0356]
Length = 777
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 107/185 (57%), Gaps = 18/185 (9%)
Query: 231 LHDLA----KSSEAQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 285
L DLA + +E ++ A++VQD+ A L+ EL + + G ++T R
Sbjct: 199 LEDLAFFYLEPTEYERVARMVQDSRAQREQDTAEAIRILDGEL--ARVGLAGYQIT--GR 254
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
K L+SI+ KM RK +YD ALRV+ P++ CYS+L VH LW P+
Sbjct: 255 PKHLWSIYQKMTRKGKEFSDIYDLIALRVLT---------PSVGDCYSVLGAVHSLWHPL 305
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
G F DY+ PKP+GY+SLHT V G D +E+QIRT +MH+ AE+G+AAHWLYK++G
Sbjct: 306 PGRFKDYVAMPKPNGYRSLHTTVIGSDARPIEIQIRTYEMHDQAEYGIAAHWLYKKSGGS 365
Query: 406 LQSIS 410
+S
Sbjct: 366 RGQMS 370
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 91/147 (61%), Gaps = 12/147 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ A +LHD V+D +L I FG+ VA+LV GV++L+ ++ ++
Sbjct: 81 DSICAALLHDTVEDTPATLADISVRFGETVAELVDGVTKLT------------SIQVASM 128
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++A +LR M L M D RVV+IKLADRLHNMRT+ AL P + A+ET+ ++ LA
Sbjct: 129 DEKQALNLRKMFLAMSKDIRVVIIKLADRLHNMRTLAALKPDRRAFKARETMDVYAPLAD 188
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ ++K ELEDL F L+P + ++
Sbjct: 189 RLGISSVKWELEDLAFFYLEPTEYERV 215
>gi|289423171|ref|ZP_06424986.1| GTP diphosphokinase [Peptostreptococcus anaerobius 653-L]
gi|289156502|gb|EFD05152.1| GTP diphosphokinase [Peptostreptococcus anaerobius 653-L]
Length = 739
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 85/132 (64%), Gaps = 10/132 (7%)
Query: 284 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 343
R K YSI+ KM++K+ ++YD A+R++V ++ CY +L +VH LW
Sbjct: 237 GRPKHFYSIYRKMKKKNKSFDEIYDLTAVRIIV---------DTVKDCYGVLGVVHTLWK 287
Query: 344 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 403
P+ G F DYI PKP+ YQSLHT V G DG +E+QIRT++MH+ AE+G AAHW YKE G
Sbjct: 288 PMPGRFKDYIAMPKPNMYQSLHTTVIGADGEPVEIQIRTKEMHQVAEYGFAAHWKYKE-G 346
Query: 404 NKLQSISSMDES 415
+ +S++DE
Sbjct: 347 VTDKDVSALDEK 358
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 85/145 (58%), Gaps = 12/145 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+DT+ GILHDVV+D IEE FG +VA LV GV++L I + T
Sbjct: 65 MDTICGGILHDVVEDTEYEESDIEEMFGKDVAVLVDGVTKLGKIQYM------------T 112
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
++ +LR M L M D RV+LIKLADRLHNMRT+ + KAR A+ETL I+ +A
Sbjct: 113 KEESQSENLRKMFLAMAKDMRVILIKLADRLHNMRTLEYMDSNKARYKARETLDIYAGIA 172
Query: 131 SRLGLWALKAELEDLCFAVLQPQIF 155
RLG+ +K ELEDL L P+ +
Sbjct: 173 HRLGIQTIKWELEDLSLRFLDPEGY 197
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 596 ASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 655
++++ K++ R M+ WE+ ++ + D V+ +V + P GE++ L
Sbjct: 353 SALDEKLQWFRMMMEWEKDVKDPHEF--------LDALKDDVLTYQVYVFT-PQGEVIEL 403
Query: 656 RSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
+GST D A KVG VNG++V + LK+GDIVE+
Sbjct: 404 PTGSTTIDFAYRIHSKVGNSCVGAKVNGRIVPLDHILKNGDIVEI 448
>gi|77164804|ref|YP_343329.1| RelA/SpoT protein [Nitrosococcus oceani ATCC 19707]
gi|254434746|ref|ZP_05048254.1| RelA/SpoT family protein [Nitrosococcus oceani AFC27]
gi|76883118|gb|ABA57799.1| RelA/SpoT protein [Nitrosococcus oceani ATCC 19707]
gi|207091079|gb|EDZ68350.1| RelA/SpoT family protein [Nitrosococcus oceani AFC27]
Length = 714
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K LYSI+ KM+ K++ H+++D A RV+V D ++ CY+ L
Sbjct: 226 GIQGQISGRPKHLYSIWKKMQAKNLDFHQLFDVHAFRVIVVD---------VRDCYAALS 276
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW PI EFDDYI +PKP+GY+SLHTAV G +E+QIR+ +MH AE G+A+H
Sbjct: 277 LVHTLWTPIPEEFDDYIAHPKPNGYRSLHTAVFDSAGKPMEIQIRSLQMHGEAELGVASH 336
Query: 397 WLYKE 401
W YKE
Sbjct: 337 WRYKE 341
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 86/161 (53%), Gaps = 8/161 (4%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+T +AG+L ++ I + +L+ G RL+ + +H R N +
Sbjct: 57 TETQIAGLLLPAMEAGLLKQEIITRNLAPTITRLLQGAERLAVL-----KHYRTNNEKDP 111
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +A LR MLL +V+DPRVVL++LAD L+ +R A + +AQETL I+ LA
Sbjct: 112 I---QAEKLRKMLLAIVEDPRVVLVRLADHLYRLRNANNETAATRQTLAQETLDIFAPLA 168
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
+RLG+W LK ELEDL L+PQ ++++ L R R
Sbjct: 169 NRLGIWQLKWELEDLALRYLEPQTYQRLTKALNKRQIDRER 209
>gi|357012698|ref|ZP_09077697.1| RelA [Paenibacillus elgii B69]
Length = 731
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 92/154 (59%), Gaps = 11/154 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM K +++YD ALR++V + I+ CY+ L
Sbjct: 227 GIDGDISGRPKHIYSIYKKMTVKSKQFNEIYDLLALRIIVDN---------IKDCYATLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H LW P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH +E+G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPLEVQIRTFEMHRTSEYGVAAH 337
Query: 397 WLYKETGNKLQSISSMDESD-IEASSSLSKDTDD 429
W YKE G + S S D+ I L DT D
Sbjct: 338 WAYKE-GTSVPSGSYEDKMHFIREILELQNDTQD 370
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+++A +LHDVV+D SL ++ E+FG A +V G+++L I +
Sbjct: 64 SIIAALLHDVVEDTTVSLETVHEKFGATCAMIVDGLTKLEKIK-----------FKSKEE 112
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
H+ N R M + M D RV+LIKLADRLHNMRT+ R +A ETL I+C +A R
Sbjct: 113 HQNEN-YRKMFVAMAQDIRVILIKLADRLHNMRTLKHQSEEAQRRIADETLEIFCPIAHR 171
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ A+K E+ED+ L PQ + ++
Sbjct: 172 LGISAIKWEMEDIALRYLNPQQYYRI 197
>gi|300812618|ref|ZP_07093031.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300496399|gb|EFK31508.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 753
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 93/156 (59%), Gaps = 14/156 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 233 GIKYDISGRPKHIYSIYKKMVNKHKDFNEIYDLLAVRVIV---------PTVKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 284 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAH 343
Query: 397 WLYKETGNKLQSISSMDESDIEASS---SLSKDTDD 429
W YK GN Q + D ++ L KD+ D
Sbjct: 344 WAYKR-GN-FQGVDEKDGGALDIGREILELQKDSSD 377
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 92/158 (58%), Gaps = 12/158 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV AG LHD V+D + I+E+FG +VA +V GV++L+ + H+
Sbjct: 69 DTVAAGFLHDTVEDTSVTNDDIKEKFGADVAFIVDGVTKLNKYE--YKSHKEF------- 119
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
A + R ML+ M D RV+L+KLADRLHNM T+ L P K R +A ETL I+ LA
Sbjct: 120 ---LAENHRKMLIAMAKDLRVILVKLADRLHNMHTLEHLRPDKQRRIAAETLDIYAPLAD 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
RLG+ +K ELED+ F + P+ + K+ + + + S R
Sbjct: 177 RLGIGTIKWELEDMSFHYMNPEAYYKIVSMMDAKRSER 214
>gi|258626909|ref|ZP_05721713.1| GTP pyrophosphokinase [Vibrio mimicus VM603]
gi|258580832|gb|EEW05777.1| GTP pyrophosphokinase [Vibrio mimicus VM603]
Length = 738
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 397 WLYKE 401
W YKE
Sbjct: 354 WKYKE 358
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA +L + S+EE +G EV KL+ GV ++ I QL NV G+
Sbjct: 74 TLVAALLFPIATSGVLDNESLEESYGREVLKLIHGVEEMAAIGQL-------NVTMHGSE 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+R + P R A+E I+ LA+
Sbjct: 127 ASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKNEPDEVRRIAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ L+ R+ + I VS + +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----RRIVREQYIRDFVSDLRAEMKQ 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ + +H+ S+ + + + + FD L D R
Sbjct: 242 LGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|386816739|ref|ZP_10103957.1| (p)ppGpp synthetase I, SpoT/RelA [Thiothrix nivea DSM 5205]
gi|386421315|gb|EIJ35150.1| (p)ppGpp synthetase I, SpoT/RelA [Thiothrix nivea DSM 5205]
Length = 718
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 99/159 (62%), Gaps = 17/159 (10%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K LYSI+ K+ RK VGI ++YD RA+RV+V D CY LD+ H W
Sbjct: 249 RPKHLYSIWKKLCRKHVGIEELYDLRAVRVIVED---------TATCYHALDVAHEKWWH 299
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I E+DDYI N K +GYQS+HT V GP+G +E+QIRT++MH +AE G+AAHW YKE G
Sbjct: 300 IPEEYDDYIGNKKANGYQSIHTVVIGPEGKYVEIQIRTREMHRFAELGVAAHWHYKEGGK 359
Query: 405 KLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSS 443
+ ++++ EA +S+ + D N D++L + + +
Sbjct: 360 QDRAMN-------EAINSMRRLLDA-NDSDSELMEDFRT 390
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 6/152 (3%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ A +L D SL IE+ +G V +L + L + +
Sbjct: 70 TLFAALLCDRRFYGTLSLDDIEQYYGQPVRRLCEDIRNLQRFRDCVE-----TTDPSISR 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAK-ARAVAQETLLIWCSLAS 131
E+ LR ML+ M+ D R VL+KLA L +R + ++ R VA++T+ ++ LA+
Sbjct: 125 QEQGEQLRRMLMAMIKDIRAVLLKLAWNLQYLRLLARTDVSELHRCVARQTMDLYAPLAN 184
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ +K ELEDL F L P ++ + LA
Sbjct: 185 RLGISQVKWELEDLSFRFLHPDTYKTIAKSLA 216
>gi|262393277|ref|YP_003285131.1| GTP pyrophosphokinase [Vibrio sp. Ex25]
gi|451972091|ref|ZP_21925303.1| GTP pyrophosphokinase [Vibrio alginolyticus E0666]
gi|262336871|gb|ACY50666.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio sp. Ex25]
gi|451931929|gb|EMD79611.1| GTP pyrophosphokinase [Vibrio alginolyticus E0666]
Length = 739
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVA 351
Query: 395 AHWLYKE 401
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V + +EE++ E+ KL+ GV ++ I QL NVN +G+
Sbjct: 74 TLVAAQLFPLVSSGAFNREILEEKYSKEIIKLIDGVEEMAAIGQL-------NVNMEGSA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ LK E+ED F QP+ ++++ L+
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPETYKQIAKQLS 218
>gi|120598070|ref|YP_962644.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella sp. W3-18-1]
gi|146293859|ref|YP_001184283.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella putrefaciens CN-32]
gi|120558163|gb|ABM24090.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella sp. W3-18-1]
gi|145565549|gb|ABP76484.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella putrefaciens CN-32]
Length = 735
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 10/130 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKHLKFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWHH 301
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE GN
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKE-GN 360
Query: 405 KLQSISSMDE 414
S +E
Sbjct: 361 HSGKQSGYEE 370
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 6/152 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A IL V D + +I+E+FG+ +A+LVA V ++ I L +IN N +
Sbjct: 72 IETLQAAILFVVFDAGLLTEEAIKEKFGEPLARLVASVVTMNAIGAL-----KINPNSRS 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ LA
Sbjct: 127 T-EPQIDNIRRMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADIYAPLA 185
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELED+ F L P ++++ L
Sbjct: 186 NRLGIGQLKWELEDISFRYLHPDTYKEIAKQL 217
>gi|312127055|ref|YP_003991929.1| (p)ppgpp synthetase i, spot/rela [Caldicellulosiruptor
hydrothermalis 108]
gi|311777074|gb|ADQ06560.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor
hydrothermalis 108]
Length = 722
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 101/173 (58%), Gaps = 14/173 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ ++VAG+LHDVV+D SL +E EFG E+A LV GV++L + + R
Sbjct: 64 IASIVAGLLHDVVEDTSASLEDVEREFGKEIADLVDGVTKLGKLEFTSKLER-------- 115
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A + R ML+ M D RV+LIKLADRLHNMRT+ LPP K R AQET+ I+ LA
Sbjct: 116 ----QAENYRKMLIAMAKDIRVILIKLADRLHNMRTLKYLPPEKQRQKAQETIDIYAPLA 171
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 183
RLG+ +K ELEDL L P+ + + +A R Y ++I +++S
Sbjct: 172 HRLGISKIKWELEDLSLRYLDPEGYYDLVEKIAKKRVEREE--YIKKIISLIS 222
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 82/135 (60%), Gaps = 14/135 (10%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+ R K YSI+ KM+++ + ++YD A+R++V +++ CY +L I+H L
Sbjct: 235 IDGRPKHFYSIYRKMKQQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTL 285
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 286 FKPMPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 345
Query: 402 TGNKLQSISSMDESD 416
I S DE +
Sbjct: 346 G-----RIKSTDEDE 355
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 599 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 658
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 354 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 404
Query: 659 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 405 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 446
>gi|262166493|ref|ZP_06034230.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio mimicus VM223]
gi|262026209|gb|EEY44877.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio mimicus VM223]
Length = 678
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 183 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 233
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 234 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 293
Query: 397 WLYKE 401
W YKE
Sbjct: 294 WKYKE 298
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA +L + S+EE +G EV KL+ GV ++ I QL NV G+
Sbjct: 14 TLVAALLFPIATSGVLDNESLEESYGREVLKLIHGVEEMAAIGQL-------NVTMHGSE 66
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+R + P R A+E I+ LA+
Sbjct: 67 ASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKNEPDEVRRIAAKECANIYAPLAN 126
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ L+ R+ + I VS + +
Sbjct: 127 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----RRIVREQYIRDFVSDLRAEMKQ 181
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ + +H+ S+ + + + + FD L D R
Sbjct: 182 LGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 216
>gi|345023332|ref|ZP_08786945.1| GTP pyrophosphokinase [Ornithinibacillus scapharcae TW25]
Length = 732
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E +S R K LYSI+ KM +++ +++YD A+RV+V +I+ CY++L
Sbjct: 233 NIEAEISGRPKHLYSIYQKMVKQNKQFNEIYDLLAVRVLVN---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PK + YQSLHT V GP G LEVQIRT++MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKQNLYQSLHTTVIGPKGDPLEVQIRTKEMHEIAEYGIAAH 343
Query: 397 WLYKE 401
W YKE
Sbjct: 344 WAYKE 348
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 86/147 (58%), Gaps = 12/147 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ G LHDVV+D +L IEEEF EVA LV GV++L I +++ Q
Sbjct: 69 ETIAGGFLHDVVEDTDITLEMIEEEFNKEVAMLVDGVTKLGKI-----KYKSKEAQQ--- 120
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
A + R M + M D RV+LIKLADRLHNMRT+ LPP K R A ETL I+ LA
Sbjct: 121 ----AENHRKMFVAMAKDIRVILIKLADRLHNMRTLKHLPPEKQRIKANETLEIFAPLAH 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELED L PQ + ++
Sbjct: 177 RLGISTIKWELEDTALRYLNPQQYYRI 203
>gi|416159982|ref|ZP_11606028.1| GTP pyrophosphokinase, partial [Neisseria meningitidis N1568]
gi|325128729|gb|EGC51592.1| GTP pyrophosphokinase [Neisseria meningitidis N1568]
Length = 360
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 189 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 239
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 240 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 299
Query: 402 TG 403
G
Sbjct: 300 GG 301
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D V A +L D+ + + E VA+LV GV + + R +
Sbjct: 10 DAVAATLLADIGRYVPDWNLLVSERCNSTVAELVKGVDEVQKLTHFARVDSLATPEERA- 68
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA-KARAVAQETLLIWCSLA 130
++A +R MLL MV D RVVLIKLA R ++ + P + + RAVA+ETL I+ LA
Sbjct: 69 --QQAETMRKMLLAMVTDIRVVLIKLAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLA 126
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+W LK +LEDL F +P+ +R++
Sbjct: 127 NRLGVWQLKWQLEDLGFRHQEPEKYREI 154
>gi|323499991|ref|ZP_08104947.1| GTP pyrophosphokinase [Vibrio sinaloensis DSM 21326]
gi|323314957|gb|EGA68012.1| GTP pyrophosphokinase [Vibrio sinaloensis DSM 21326]
Length = 739
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKGLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 MVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKEMHEDSELGVAAH 353
Query: 397 WLYKETG 403
W YKE G
Sbjct: 354 WKYKEGG 360
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 8/152 (5%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA +L +V + + EE+FG E KL+ GV ++ + QL N+ +G+
Sbjct: 74 TLVAALLFPLVSSGAYAREAFEEDFGKETIKLIDGVEEMAALGQL-------NITMEGSA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P A A+E I+ LA+
Sbjct: 127 ASAQVDNVRRMLLAMVDDFRCVIIKLAERIANLVEVKKAPEEIRCAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ LK E+ED F QP ++++ L+
Sbjct: 187 RLGIGQLKWEMEDYAFRYQQPDTYKQIAKQLS 218
>gi|322831387|ref|YP_004211414.1| (p)ppGpp synthetase I SpoT/RelA [Rahnella sp. Y9602]
gi|384256502|ref|YP_005400436.1| (p)ppGpp synthetase I [Rahnella aquatilis HX2]
gi|321166588|gb|ADW72287.1| (p)ppGpp synthetase I, SpoT/RelA [Rahnella sp. Y9602]
gi|380752478|gb|AFE56869.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Rahnella aquatilis
HX2]
Length = 745
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 85/125 (68%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++V + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 GIKVDVYGRPKHIYSIWRKMQKKSLSFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LEVQIRT++MHE AE G+AAH
Sbjct: 295 IVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPRGKTLEVQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ A +L +VDD ++ ++FG + LV GV + I QL ++
Sbjct: 74 DSMRAALLFPLVDDGIIDEDTLTQQFGKAITDLVHGVRDMDAIRQLK------ATQNDSM 127
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E+ +++R MLL MV+D R V++KLA+R+ ++R + P + A+E I+ LA+
Sbjct: 128 ASEQVDNVRRMLLAMVEDFRCVVLKLAERIAHLREVKDAPEEERVLAAKECTNIYAPLAN 187
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ LK ELED CF L P ++++
Sbjct: 188 RLGIGQLKWELEDFCFRYLHPDEYKRI 214
>gi|258622335|ref|ZP_05717360.1| GTP pyrophosphokinase [Vibrio mimicus VM573]
gi|262170600|ref|ZP_06038278.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio mimicus MB-451]
gi|424807655|ref|ZP_18233063.1| GTP pyrophosphokinase [Vibrio mimicus SX-4]
gi|258585351|gb|EEW10075.1| GTP pyrophosphokinase [Vibrio mimicus VM573]
gi|261891676|gb|EEY37662.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio mimicus MB-451]
gi|342325597|gb|EGU21377.1| GTP pyrophosphokinase [Vibrio mimicus SX-4]
Length = 738
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 397 WLYKE 401
W YKE
Sbjct: 354 WKYKE 358
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA +L + S+EE +G EV KL+ GV ++ I QL NV G+
Sbjct: 74 TLVAALLFPIATSGVLDNESLEESYGREVLKLIHGVEEMAAIGQL-------NVTMHGSE 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+R + P R A+E I+ LA+
Sbjct: 127 ASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKNEPDEVRRIAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ L+ R+ + I VS + +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----RRIVREQYIRDFVSDLRAEMKQ 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ + +H+ S+ + + + + FD L D R
Sbjct: 242 LGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|189911774|ref|YP_001963329.1| GTP pyrophosphokinase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167776450|gb|ABZ94751.1| GTP pyrophosphokinase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
Length = 684
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 83/132 (62%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ + R K YSI+ KM K+ +++D RA+R++ + I+ CY +L
Sbjct: 234 NIDARIDGRAKHFYSIYRKMVTKEKSFSEIFDLRAVRIIANE---------IKDCYGVLG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI G F DYI PK + YQSLHT V GPDG +EVQIRT++M+ AE+G+AAH
Sbjct: 285 IVHTLWTPIPGRFKDYIATPKTNLYQSLHTTVFGPDGRPMEVQIRTKEMNAIAENGVAAH 344
Query: 397 WLYKETGNKLQS 408
W YKE+ N +S
Sbjct: 345 WAYKESTNLTRS 356
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 99/169 (58%), Gaps = 14/169 (8%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDVV+D + + EFG+++A LV GV+++S I +
Sbjct: 72 IAAGLLHDVVEDTSYTKEDMAREFGEDIAALVEGVTKISEIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R MLL + D RV+LIKLAD+ HN+RT+ P K + +A+E L ++ +A RL
Sbjct: 120 EAAENIRKMLLATIKDVRVMLIKLADKTHNVRTLKFQPEEKQKRIAKEVLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
G++ +K ELEDL F L P +++++ +++ S R+ Y +I I+
Sbjct: 180 GVYKVKFELEDLAFQSLHPDEYQEIKKRVSAKKSERDE--YIEKIKIIL 226
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
+ V P GEI+ + G+T D A + VGL + VNG++V TELK GD VE+
Sbjct: 402 IFVFTPKGEIIEMPKGATVLDYAFRIHTDVGLHARGGKVNGRMVTLRTELKSGDQVEI 459
>gi|317502040|ref|ZP_07960222.1| GTP diphosphokinase [Lachnospiraceae bacterium 8_1_57FAA]
gi|316896514|gb|EFV18603.1| GTP diphosphokinase [Lachnospiraceae bacterium 8_1_57FAA]
Length = 774
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 88/136 (64%), Gaps = 9/136 (6%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R+K +SI+ KM ++ + +VYD A+R++V +++ CY+ L +
Sbjct: 268 IEAKVYGRVKHFFSIYKKMVNQNKTLDQVYDLFAVRIIV---------DSVKDCYAALGV 318
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
+H ++ PI G F DYI PKP+ YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW
Sbjct: 319 IHEMYTPIPGRFKDYIAMPKPNMYQSLHTTLMGPSGQPFEIQIRTEEMHKTAEYGIAAHW 378
Query: 398 LYKETGNKLQSISSMD 413
YKE G+ +S+ S +
Sbjct: 379 KYKEGGDSAKSMESQE 394
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 94/151 (62%), Gaps = 11/151 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+VAG+LHD V+D +L + EFG+EVA LV GV++L ++N +Q L
Sbjct: 102 ETIVAGMLHDAVEDTDMTLDDVAGEFGEEVALLVDGVTKLG----------QLNYSQDKL 151
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A +LR M L M D RV++IKLADRLHNMRT+ + P K + A+ET+ I+ +A
Sbjct: 152 -EVQAENLRKMFLAMAKDIRVIIIKLADRLHNMRTLEFMTPTKQQEKARETMDIYAPIAQ 210
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
RLG+ +K EL+DL +P+++ + DL
Sbjct: 211 RLGISKIKTELDDLSLKYWKPEVYYNLVRDL 241
>gi|168052096|ref|XP_001778487.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670085|gb|EDQ56660.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 546
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 99/162 (61%), Gaps = 19/162 (11%)
Query: 251 GIALTSLVACEEALEKELLISTSYIPGME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 309
G+ ++S+ +EAL + G++ + L R K+LYS++ KM +K ++ D
Sbjct: 224 GLVMSSIRDLDEALR---------VGGVQFIDLCGRPKNLYSVYKKMMKKKRSPDEILDV 274
Query: 310 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 369
R LR++V D+ + CY L++VH+LW I G+ DYIV+ KP+GY+SLHT V
Sbjct: 275 RGLRLIVTDE---------ESCYQALEVVHQLWRCIPGKTKDYIVDSKPNGYKSLHTVVI 325
Query: 370 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISS 411
G DG LEVQIRT KMH AE+GLAAHW YKE ++ + SS
Sbjct: 326 GSDGYPLEVQIRTMKMHHQAEYGLAAHWRYKEDNSEHSAFSS 367
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/140 (52%), Positives = 94/140 (67%), Gaps = 7/140 (5%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
V AG+LHD +DD+ SL + G+ VA LV GVS+LS +QL R N TL
Sbjct: 75 VVAAGLLHDAIDDSNLSLELLRCSLGENVASLVIGVSKLSEFSQLARD---CNTVCDTL- 130
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
EA+ LR M+L MVD RVVLIK+ADRLHN+RT+ ALP K +A+ETL I+ LA+R
Sbjct: 131 --EADRLRTMILAMVD-VRVVLIKIADRLHNLRTLEALPSHKQIGIAKETLEIFAPLANR 187
Query: 133 LGLWALKAELEDLCFAVLQP 152
LG+W+ KAE+EDLCF L+P
Sbjct: 188 LGIWSWKAEMEDLCFKCLKP 207
>gi|392941128|ref|ZP_10306772.1| LOW QUALITY PROTEIN: (p)ppGpp synthetase, RelA/SpoT family
[Thermoanaerobacter siderophilus SR4]
gi|392292878|gb|EIW01322.1| LOW QUALITY PROTEIN: (p)ppGpp synthetase, RelA/SpoT family
[Thermoanaerobacter siderophilus SR4]
Length = 719
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 397 WLYKE 401
W YKE
Sbjct: 338 WKYKE 342
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 97/171 (56%), Gaps = 13/171 (7%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ T+ AG+LHDV++D + + E FG E+A LV GV++L I + V Q
Sbjct: 62 ITTIAAGLLHDVIEDTDVTYDQLMENFGKEIADLVDGVTKLGKI------EYKSKVEQ-- 113
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A ++R ML+ M D RV+LIKLADRLHNMRT+ LP K + A+ETL I+ +A
Sbjct: 114 ----QAENMRKMLIAMAKDIRVILIKLADRLHNMRTLKYLPLDKQKEKAEETLEIYAPIA 169
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
RLG+ +K ELEDLC L P+ + + +A+ R ITTI
Sbjct: 170 HRLGISKIKWELEDLCLRYLHPEEYYDLVEKVAAKRKEREEF-IQNIITTI 219
Score = 46.2 bits (108), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 593 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 652
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 653 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 698
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
>gi|345017525|ref|YP_004819878.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344032868|gb|AEM78594.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 719
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 397 WLYKE 401
W YKE
Sbjct: 338 WKYKE 342
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 97/171 (56%), Gaps = 13/171 (7%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ T+ AG+LHDV++D + + E FG E+A LV GV++L I + V Q
Sbjct: 62 ITTIAAGLLHDVIEDTDVTYDQLMENFGKEIADLVDGVTKLGKI------EYKSKVEQ-- 113
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A ++R ML+ M D RV+LIKLADRLHNMRT+ LP K + A+ETL I+ +A
Sbjct: 114 ----QAENMRKMLIAMAKDIRVILIKLADRLHNMRTLKYLPLDKQKEKAEETLEIYAPIA 169
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
RLG+ +K ELEDLC L P+ + + +A+ R ITTI
Sbjct: 170 HRLGISKIKWELEDLCLRYLHPEEYYDLVEKVAAKRKEREEF-IQNIITTI 219
Score = 45.8 bits (107), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 593 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 652
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 653 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 698
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
>gi|383188618|ref|YP_005198746.1| RelA/SpoT family (p)ppGpp synthetase [Rahnella aquatilis CIP 78.65
= ATCC 33071]
gi|371586876|gb|AEX50606.1| (p)ppGpp synthetase, RelA/SpoT family [Rahnella aquatilis CIP 78.65
= ATCC 33071]
Length = 745
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 85/125 (68%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++V + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 GIKVDVYGRPKHIYSIWRKMQKKSLSFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LEVQIRT++MHE AE G+AAH
Sbjct: 295 IVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPRGKTLEVQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ A +L +VDD ++ ++FG + LV GV + I QL ++
Sbjct: 74 DSMRAALLFPLVDDGIIDEDTLTQQFGKGITDLVHGVRDMDAIRQLK------ATQNDSM 127
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E+ +++R MLL MV+D R V++KLA+R+ ++R + P + A+E I+ LA+
Sbjct: 128 ASEQVDNVRRMLLAMVEDFRCVVLKLAERIAHLREVKDAPEEERVLAAKECTNIYAPLAN 187
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ LK ELED CF L P ++++
Sbjct: 188 RLGIGQLKWELEDFCFRYLHPDEYKRI 214
>gi|167037441|ref|YP_001665019.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115854|ref|YP_004186013.1| RelA/SpoT family protein [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|166856275|gb|ABY94683.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928945|gb|ADV79630.1| RelA/SpoT family protein [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 719
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 397 WLYKE 401
W YKE
Sbjct: 338 WKYKE 342
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 97/171 (56%), Gaps = 13/171 (7%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ T+ AG+LHDV++D + + E FG E+A LV GV++L I + V Q
Sbjct: 62 ITTIAAGLLHDVIEDTDVTYDQLMENFGKEIADLVDGVTKLGKI------EYKSKVEQ-- 113
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A ++R ML+ M D RV+LIKLADRLHNMRT+ LP K + A+ETL I+ +A
Sbjct: 114 ----QAENMRKMLIAMAKDIRVILIKLADRLHNMRTLKYLPLDKQKEKAEETLEIYAPIA 169
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
RLG+ +K ELEDLC L P+ + + +A+ R ITTI
Sbjct: 170 HRLGISKIKWELEDLCLRYLHPEEYYDLVEKVAAKRKEREEF-IQNIITTI 219
Score = 46.2 bits (108), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 593 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 652
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 653 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 698
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
>gi|405983984|ref|ZP_11042289.1| RelA/SpoT family protein [Slackia piriformis YIT 12062]
gi|404388799|gb|EJZ83881.1| RelA/SpoT family protein [Slackia piriformis YIT 12062]
Length = 788
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 9/124 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K LYSI+ KM ++ G ++YD A+RV+V ++ CYS+L VH L
Sbjct: 279 IAGRPKHLYSIYQKMTKRGKGFSEIYDLIAVRVIV---------KTVKDCYSVLGAVHAL 329
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G F DYI PK + YQSLHT V GP G LEVQIRT++MH +E+G+AAHW YKE
Sbjct: 330 WHPMPGRFKDYIAMPKLNMYQSLHTTVIGPSGRPLEVQIRTEEMHRMSEYGVAAHWRYKE 389
Query: 402 TGNK 405
G+K
Sbjct: 390 KGSK 393
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 94/160 (58%), Gaps = 12/160 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DT+ A +LHD V+D ++ + E F +VA+LV GV++++ RI V G+L
Sbjct: 110 DTLCAALLHDTVEDTPTTVEEVSELFNPQVAQLVQGVTKIT----------RIEV--GSL 157
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E+A +R M + M D RV++IKLADRLHNMRT+ AL + A+ETL I+ +A
Sbjct: 158 TDEQAATIRKMFVAMSKDIRVIVIKLADRLHNMRTLSALKEDRRIFKARETLEIYAPIAH 217
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
RLG+ ++K ELEDL F L P F ++ +A R R
Sbjct: 218 RLGIGSIKWELEDLSFYYLDPAKFGQISRMVAESRVERER 257
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 597 SINNKVRLLRTMLRWEEQLR-SEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 655
+ + ++ LR M+ W+E+ + S L K+ + P EV + P G++M L
Sbjct: 397 AFDRQIAWLRQMVDWQEETKDSREFLSDLKV---------DLAPTEVFVFT-PAGDVMSL 446
Query: 656 RSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 696
RSGST D A V E G + VNG +V + EL+ GD VE+
Sbjct: 447 RSGSTPVDFAYNVHSEVGNHCVGAKVNGAIVPLSYELQMGDRVEI 491
>gi|422845570|ref|ZP_16892280.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. lactis DSM
20072]
gi|325684220|gb|EGD26396.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. lactis DSM
20072]
Length = 753
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 87/140 (62%), Gaps = 14/140 (10%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 233 GIKYDISGRPKHIYSIYKKMVNKHKDFNEIYDLLAVRVIV---------PTVKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 284 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAH 343
Query: 397 WLYKETGNKLQSISSMDESD 416
W YK GN +DE D
Sbjct: 344 WAYKR-GN----FQGVDEKD 358
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 92/158 (58%), Gaps = 12/158 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV AG LHD V+D + I+EEFG +VA +V GV++L+ + H+
Sbjct: 69 DTVAAGFLHDTVEDTSVTNDDIKEEFGADVAFIVDGVTKLNKYE--YKSHKEF------- 119
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
A + R ML+ M D RV+L+KLADRLHNM T+ L P K R +A ETL I+ LA
Sbjct: 120 ---LAENHRKMLIAMAKDLRVILVKLADRLHNMHTLEHLRPDKQRRIAAETLDIYAPLAD 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
RLG+ +K ELED+ F + P+ + K+ + + + S R
Sbjct: 177 RLGIGTIKWELEDMSFHYMNPEAYYKIVSMMDAKRSER 214
>gi|310778489|ref|YP_003966822.1| (p)ppGpp synthetase I SpoT/RelA [Ilyobacter polytropus DSM 2926]
gi|309747812|gb|ADO82474.1| (p)ppGpp synthetase I, SpoT/RelA [Ilyobacter polytropus DSM 2926]
Length = 718
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 102/164 (62%), Gaps = 14/164 (8%)
Query: 8 KRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN 67
K DT+VAGILHD+V+D ++ IE FG+ VAKLV GV++LS + + ++
Sbjct: 60 KMDTDTIVAGILHDIVEDTLITVSDIEYNFGNSVAKLVDGVTKLSVLPKGTKKQ------ 113
Query: 68 QGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWC 127
HE ++R M++ M D RVV+IKLADRLHNMRT+ +P K +++ETL I+
Sbjct: 114 -----HE---NIRKMIVAMAQDIRVVIIKLADRLHNMRTLKYMPAHKQERISRETLEIFA 165
Query: 128 SLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
LA RLG+ +K ELEDL L+P+I+R++ + S + R +
Sbjct: 166 PLAHRLGMAMIKCELEDLSLYYLEPEIYRELVKLINSKKAEREK 209
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 87/145 (60%), Gaps = 14/145 (9%)
Query: 259 ACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 318
A ++ +EK LL + I G +S R K YSI+ KM K ++YD ALR++V +
Sbjct: 213 ATKKEIEKFLL--ENNIKG---EVSGRPKHFYSIYKKMYEKGKEFDEIYDLIALRIIV-E 266
Query: 319 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 378
G CY++L ++H + P+ G F DYI PK +GYQS+HT + GP G +EV
Sbjct: 267 TEGE--------CYNVLGVLHGNYKPVPGRFKDYIAVPKSNGYQSIHTTIVGPQGKFIEV 318
Query: 379 QIRTQKMHEYAEHGLAAHWLYKETG 403
QIRT++MH AE G+AAHW YKE G
Sbjct: 319 QIRTEEMHGIAEEGVAAHWSYKERG 343
>gi|205374215|ref|ZP_03227014.1| GTP diphosphokinase [Bacillus coahuilensis m4-4]
Length = 708
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
LS R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L I+H
Sbjct: 214 LSGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRIIVN---------SIKDCYAVLGIIHTC 264
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT+ MH AE+G+AAHW YKE
Sbjct: 265 WKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTRDMHRIAEYGVAAHWAYKE 324
Query: 402 TGNKLQSISSMDE 414
+ S ++ D+
Sbjct: 325 EKEHVASRNTFDK 337
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 83/146 (56%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV AG LHDVV+D S I E F +EVA LV GV++L + +
Sbjct: 46 TVAAGFLHDVVEDTPISKQDIAETFNEEVAMLVDGVTKLG------------KIKFKSQE 93
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R +A ET+ I+ LA R
Sbjct: 94 EQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPAEKQRRIANETIEIFAPLAHR 153
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 154 LGISKIKWELEDTALRYLNPQQYYRI 179
>gi|386314606|ref|YP_006010771.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella putrefaciens 200]
gi|319427231|gb|ADV55305.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella putrefaciens 200]
Length = 735
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 10/130 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKHLKFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWHH 301
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE GN
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKE-GN 360
Query: 405 KLQSISSMDE 414
S +E
Sbjct: 361 HSGKQSGYEE 370
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 6/152 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A IL V D + +I+E+FG+ +A+LVA V ++ I L +IN N +
Sbjct: 72 IETLQAAILFVVFDAGLLTEEAIKEKFGEPLARLVASVVTMNAIGAL-----KINPNSRS 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ LA
Sbjct: 127 T-EPQIDNIRRMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADIYAPLA 185
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELED+ F L P ++++ L
Sbjct: 186 NRLGIGQLKWELEDISFRYLHPDTYKEIAKQL 217
>gi|119471911|ref|ZP_01614219.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Alteromonadales
bacterium TW-7]
gi|359451554|ref|ZP_09240955.1| GTP pyrophosphokinase [Pseudoalteromonas sp. BSi20480]
gi|392536915|ref|ZP_10284052.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Pseudoalteromonas
marina mano4]
gi|119445284|gb|EAW26574.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Alteromonadales
bacterium TW-7]
gi|358042773|dbj|GAA77204.1| GTP pyrophosphokinase [Pseudoalteromonas sp. BSi20480]
Length = 718
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K +YSI+ KM +K+ +++D RA+R+VV +Q CY L
Sbjct: 234 GIEAEVYGRPKHIYSIYKKMAQKNYEFDQLFDIRAMRIVV---------DRLQDCYGALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH W ++ EFDDY+ PK +GYQS+HT V GP+G +E+QIRTQ MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYVATPKQNGYQSIHTVVFGPEGKTVEIQIRTQDMHQDAELGVAAH 344
Query: 397 WLYKE 401
W+YKE
Sbjct: 345 WMYKE 349
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 86/145 (59%), Gaps = 14/145 (9%)
Query: 18 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEAN 77
L+DVV SL +++E+ G ++ L+ GVS+++ I+ L +QG G + +
Sbjct: 78 FLNDVV-----SLETVQEQLGSNISLLLTGVSQMATISTL--------SHQGK-GTVQVD 123
Query: 78 DLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWA 137
++R MLL MV+D R V+IKLA+++ ++R + + A+ET I+ LA+RLG+
Sbjct: 124 NIRKMLLTMVEDVRAVVIKLAEQVCHLRNVKNAGEEERVIAAKETADIFAPLANRLGIGQ 183
Query: 138 LKAELEDLCFAVLQPQIFRKMRADL 162
LK ELEDL F L+P ++K+ L
Sbjct: 184 LKWELEDLSFRYLRPDTYKKIAKQL 208
>gi|331090444|ref|ZP_08339325.1| hypothetical protein HMPREF1025_02908 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336440256|ref|ZP_08619849.1| hypothetical protein HMPREF0990_02243 [Lachnospiraceae bacterium
1_1_57FAA]
gi|330401191|gb|EGG80784.1| hypothetical protein HMPREF1025_02908 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336013722|gb|EGN43596.1| hypothetical protein HMPREF0990_02243 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 767
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 88/136 (64%), Gaps = 9/136 (6%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R+K +SI+ KM ++ + +VYD A+R++V +++ CY+ L +
Sbjct: 261 IEAKVYGRVKHFFSIYKKMVNQNKTLDQVYDLFAVRIIV---------DSVKDCYAALGV 311
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
+H ++ PI G F DYI PKP+ YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW
Sbjct: 312 IHEMYTPIPGRFKDYIAMPKPNMYQSLHTTLMGPSGQPFEIQIRTEEMHKTAEYGIAAHW 371
Query: 398 LYKETGNKLQSISSMD 413
YKE G+ +S+ S +
Sbjct: 372 KYKEGGDSAKSMESQE 387
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 94/151 (62%), Gaps = 11/151 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+VAG+LHD V+D +L + EFG+EVA LV GV++L ++N +Q L
Sbjct: 95 ETIVAGMLHDAVEDTDMTLDDVAGEFGEEVALLVDGVTKLG----------QLNYSQDKL 144
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A +LR M L M D RV++IKLADRLHNMRT+ + P K + A+ET+ I+ +A
Sbjct: 145 -EVQAENLRKMFLAMAKDIRVIIIKLADRLHNMRTLEFMTPTKQQEKARETMDIYAPIAQ 203
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
RLG+ +K EL+DL +P+++ + DL
Sbjct: 204 RLGISKIKTELDDLSLKYWKPEVYYNLVRDL 234
>gi|326390128|ref|ZP_08211689.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter ethanolicus JW
200]
gi|325993776|gb|EGD52207.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter ethanolicus JW
200]
Length = 719
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 397 WLYKE 401
W YKE
Sbjct: 338 WKYKE 342
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 97/171 (56%), Gaps = 13/171 (7%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ T+ AG+LHDV++D + + E FG E+A LV GV++L I + V Q
Sbjct: 62 ITTIAAGLLHDVIEDTDVTYDQLMENFGKEIADLVDGVTKLGKI------EYKSKVEQ-- 113
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A ++R ML+ M D RV+LIKLADRLHNMRT+ LP K + A+ETL I+ +A
Sbjct: 114 ----QAENMRKMLIAMAKDIRVILIKLADRLHNMRTLKYLPLDKQKEKAEETLEIYAPIA 169
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
RLG+ +K ELEDLC L P+ + + +A+ R ITTI
Sbjct: 170 HRLGISKIKWELEDLCLRYLHPEEYYDLVEKVAAKRKEREEF-IQNIITTI 219
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 593 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 652
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 653 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 698
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
>gi|153824096|ref|ZP_01976763.1| GTP pyrophosphokinase [Vibrio cholerae B33]
gi|126518383|gb|EAZ75606.1| GTP pyrophosphokinase [Vibrio cholerae B33]
Length = 472
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 397 WLYKETGNKLQS 408
W YKE + +S
Sbjct: 354 WKYKEGSSAARS 365
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 109/215 (50%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA +L + S+EE +G EV KL+ GV ++ I QL NV G+
Sbjct: 74 TLVAALLFPIATSGVLDNESLEEGYGREVVKLIHGVEEMAAIGQL-------NVTMHGSE 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+R + P R A+E I+ LA+
Sbjct: 127 ASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKNEPDEVRRVAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ L+ R+ + I VS + +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----RRIVREQYIRDFVSDLRAEMKQ 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ + + +H+ S+ + + + + FD L D R
Sbjct: 242 SGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|418025453|ref|ZP_12664431.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS625]
gi|353535065|gb|EHC04629.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS625]
Length = 735
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 10/130 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKHLKFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWHH 301
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE GN
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKE-GN 360
Query: 405 KLQSISSMDE 414
S +E
Sbjct: 361 HSGKQSGYEE 370
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A IL V D + +I+E+FG+ +A+LVA V ++ I L +IN N +
Sbjct: 72 IETLQAAILFVVFDAGLLTEEAIKEKFGEALARLVASVVTMNAIGAL-----KINPNSRS 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ LA
Sbjct: 127 T-EPQIDNIRRMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADIYAPLA 185
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELED+ F L P ++ + L
Sbjct: 186 NRLGIGQLKWELEDISFRYLHPDTYKDIAKQL 217
>gi|24374961|ref|NP_719004.1| GTP pyrophosphokinase RelA [Shewanella oneidensis MR-1]
gi|24349682|gb|AAN56448.1| GTP pyrophosphokinase RelA [Shewanella oneidensis MR-1]
Length = 735
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 10/130 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKHLKFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWHH 301
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE GN
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKE-GN 360
Query: 405 KLQSISSMDE 414
S +E
Sbjct: 361 HSGKQSGYEE 370
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 6/152 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A IL V D + +I+E+FG+ +A+LVA V ++ I L +IN N +
Sbjct: 72 IETLQAAILFVVFDAGLLNEEAIKEKFGEPLARLVASVVTMNAIGAL-----KINPNSRS 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ LA
Sbjct: 127 T-EPQIDNIRRMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADIYAPLA 185
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELED+ F L P ++++ L
Sbjct: 186 NRLGIGQLKWELEDISFRYLHPDTYKEIAKQL 217
>gi|290476631|ref|YP_003469536.1| (p)ppGpp synthetase I [Xenorhabdus bovienii SS-2004]
gi|289175969|emb|CBJ82772.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Xenorhabdus bovienii
SS-2004]
Length = 745
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 93/143 (65%), Gaps = 11/143 (7%)
Query: 261 EEALEKELLISTSYI--PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 318
E+ +EK + Y+ G+ V + R K +YSI+ KM++K +G +++D RA+R+VV
Sbjct: 226 EQYIEKFVTTIRKYMLKEGIPVEIYGRPKHIYSIWRKMQKKSLGFDELFDVRAVRIVV-- 283
Query: 319 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 378
+Q CY+ L IVH + + EFDDY+ N KP+GYQS+HT V GP+G LE+
Sbjct: 284 -------ERLQDCYAALGIVHTHYRHLPDEFDDYVANAKPNGYQSIHTVVLGPNGKTLEI 336
Query: 379 QIRTQKMHEYAEHGLAAHWLYKE 401
QIRT++MH+ AE G+AAHW YKE
Sbjct: 337 QIRTRQMHDDAELGVAAHWKYKE 359
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 6/147 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ A +L ++D ++ E FG + LV GV + I QL H +
Sbjct: 74 DSMRAALLFPILDAKLLDNETVTETFGTAITNLVHGVMEMDAIRQLKATH------TDST 127
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MV+D R V+IKLA+R+ ++R + + A+E I+ LA+
Sbjct: 128 SSVQVDNVRRMLLSMVEDFRCVIIKLAERIAHLREVKDASEDERVLAAKECSNIYAPLAN 187
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ LK ELED CF L P ++K+
Sbjct: 188 RLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|113969455|ref|YP_733248.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella sp. MR-4]
gi|114046683|ref|YP_737233.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella sp. MR-7]
gi|113884139|gb|ABI38191.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella sp. MR-4]
gi|113888125|gb|ABI42176.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella sp. MR-7]
Length = 735
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 10/130 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKHLKFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWHH 301
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE GN
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKE-GN 360
Query: 405 KLQSISSMDE 414
S +E
Sbjct: 361 HSGKQSGYEE 370
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A IL V D + +I+E+FG+ +A+LVA V + I L +IN N +
Sbjct: 72 IETLQAAILFVVFDAGLLNEEAIKEKFGESLARLVASVVTMDAIGAL-----KINPNSRS 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ LA
Sbjct: 127 T-EPQIDNIRRMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADIYAPLA 185
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELED+ F L P ++ + L
Sbjct: 186 NRLGIGQLKWELEDISFRYLHPDTYKDIAKQL 217
>gi|335041192|ref|ZP_08534308.1| (p)ppGpp synthetase I, SpoT/RelA [Caldalkalibacillus thermarum
TA2.A1]
gi|334178990|gb|EGL81639.1| (p)ppGpp synthetase I, SpoT/RelA [Caldalkalibacillus thermarum
TA2.A1]
Length = 721
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 87/140 (62%), Gaps = 10/140 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+ + +++YD A+R++V ++ CY++L
Sbjct: 227 GIKAEISGRPKHIYSIYRKMQEQKKAFNEIYDLMAIRIIV---------ETVRDCYAVLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V G LEVQIRT +MH AE+G+AAH
Sbjct: 278 IIHTCWKPLPGRFKDYIAMPKPNMYQSLHTTVMSYKGQPLEVQIRTHEMHRTAEYGIAAH 337
Query: 397 WLYKETGN-KLQSISSMDES 415
W YKE N K S S++DE
Sbjct: 338 WAYKEGKNLKETSPSALDEK 357
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 88/146 (60%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ A +LHDV++D ++ +EE+FG+EVA LV GV++L I +
Sbjct: 64 TIAAALLHDVIEDTTATVEELEEQFGEEVALLVNGVTKLKRIKY------------KSQE 111
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ +P K R A+ETL I+ LA R
Sbjct: 112 EQQAENHRRMFVAMAKDLRVILIKLADRLHNMRTLKYMPEEKRRKKAEETLEIFAPLAHR 171
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED+ L PQ + ++
Sbjct: 172 LGISTIKWELEDISLRYLNPQQYYRI 197
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 641 EVVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 696
+VV V P G+++ L +GS D A ++ E G + VNG++V + ELK GDIVE+
Sbjct: 388 DVVFVFTPKGDVIELPAGSVPLDFAYRIHTEVGNRCVGAKVNGKIVPLDHELKTGDIVEI 447
>gi|300914191|ref|ZP_07131507.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter sp. X561]
gi|307724574|ref|YP_003904325.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter sp. X513]
gi|300889126|gb|EFK84272.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter sp. X561]
gi|307581635|gb|ADN55034.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter sp. X513]
Length = 719
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 397 WLYKE 401
W YKE
Sbjct: 338 WKYKE 342
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 97/171 (56%), Gaps = 13/171 (7%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ T+ AG+LHDV++D + G + E FG E+A LV GV++L I + V Q
Sbjct: 62 ITTIAAGLLHDVIEDTDVTYGQLLEYFGKEIADLVDGVTKLGKI------EYKSKVEQ-- 113
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A ++R ML+ M D RV+LIKLADRLHNMRT+ LP K + A+ETL I+ +A
Sbjct: 114 ----QAENMRKMLIAMAKDIRVILIKLADRLHNMRTLKYLPLDKQKEKAEETLEIYAPIA 169
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTI 181
RLG+ +K ELEDLC L P + + +A+ R ITTI
Sbjct: 170 HRLGISKIKWELEDLCLRYLHPDEYYDLVEKVAAKRKEREEF-IQNIITTI 219
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 595 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 654
E + K+ LR +L W+++L+ ++ K + D V V P G+++
Sbjct: 347 EDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDVIN 397
Query: 655 LRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 698
L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 398 LPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
>gi|336310558|ref|ZP_08565530.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Shewanella sp.
HN-41]
gi|335866288|gb|EGM71279.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Shewanella sp.
HN-41]
Length = 735
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 10/130 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKHLKFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWHH 301
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE GN
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKE-GN 360
Query: 405 KLQSISSMDE 414
S +E
Sbjct: 361 HSGKQSGYEE 370
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A IL V D + +I+E+FG+ +A+LVA V ++ I L +IN N +
Sbjct: 72 IETLQAAILFVVFDAGLLTEEAIKEKFGEPLARLVASVVTMNAIGAL-----KINPNSRS 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ LA
Sbjct: 127 T-EPQIDNIRRMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADIYAPLA 185
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELED+ F L P ++ + L
Sbjct: 186 NRLGIGQLKWELEDISFRYLHPDTYKDIAKQL 217
>gi|373950482|ref|ZP_09610443.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS183]
gi|386323682|ref|YP_006019799.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica BA175]
gi|333817827|gb|AEG10493.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica BA175]
gi|373887082|gb|EHQ15974.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS183]
Length = 735
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 10/130 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKHLKFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWHH 301
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE GN
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKE-GN 360
Query: 405 KLQSISSMDE 414
S +E
Sbjct: 361 HSGKQSGYEE 370
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 6/152 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A IL V D + +I+E+FG+ +A+LVA V ++ I L +IN N +
Sbjct: 72 IETLQAAILFVVFDAGLLTEEAIKEKFGEPLARLVASVVTMNAIGAL-----KINPNSRS 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ + +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ LA
Sbjct: 127 I-EPQIDNIRRMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADIYAPLA 185
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELED+ F L P ++ + L
Sbjct: 186 NRLGIGQLKWELEDISFRYLHPDTYKDIAKQL 217
>gi|313123577|ref|YP_004033836.1| GTP pyrophosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
gi|312280140|gb|ADQ60859.1| GTP pyrophosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
Length = 753
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 87/140 (62%), Gaps = 14/140 (10%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 233 GIKYDISGRPKHIYSIYKKMVNKHKDFNEIYDLLAVRVIV---------PTVKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 284 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAH 343
Query: 397 WLYKETGNKLQSISSMDESD 416
W YK GN +DE D
Sbjct: 344 WAYKR-GN----FQGVDEKD 358
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 92/158 (58%), Gaps = 12/158 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV AG LHD V+D + I+E+FG +VA +V GV++L+ + H+
Sbjct: 69 DTVAAGFLHDTVEDTSVTNDDIKEKFGADVAFIVDGVTKLNKYE--YKSHKEF------- 119
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
A + R ML+ M D RV+L+KLADRLHNM T+ L P K R +A ETL I+ LA
Sbjct: 120 ---LAENHRKMLIAMAKDLRVILVKLADRLHNMHTLEHLRPDKQRRIAAETLDIYAPLAD 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
RLG+ +K ELED+ F + P+ + K+ + + + S R
Sbjct: 177 RLGIGTIKWELEDMSFHYMNPEEYYKIVSMMDAKRSER 214
>gi|311031524|ref|ZP_07709614.1| GTP pyrophosphokinase [Bacillus sp. m3-13]
Length = 732
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 83/126 (65%), Gaps = 11/126 (8%)
Query: 278 MEVT--LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 335
+E+T LS R K +YSI+ KM +++ ++YD A+R++V +I+ CY++L
Sbjct: 232 VEITAELSGRPKHIYSIYRKMAKQNKQFSEIYDLLAVRIIVN---------SIKDCYAVL 282
Query: 336 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 395
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT MH+ AE+G+AA
Sbjct: 283 GIIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTSDMHQIAEYGIAA 342
Query: 396 HWLYKE 401
HW YKE
Sbjct: 343 HWAYKE 348
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ AG LHDVV+D +L I+E F EVA LV GV++L I +
Sbjct: 70 TIAAGFLHDVVEDTSVTLEEIKEAFNAEVAMLVDGVTKLGKIKY------------KSQE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA R
Sbjct: 118 EQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISKIKWELEDTALRYLNPQQYYRI 203
>gi|308048559|ref|YP_003912125.1| (p)ppGpp synthetase I SpoT/RelA [Ferrimonas balearica DSM 9799]
gi|307630749|gb|ADN75051.1| (p)ppGpp synthetase I, SpoT/RelA [Ferrimonas balearica DSM 9799]
Length = 730
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 84/130 (64%), Gaps = 10/130 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K +YSI+ KM++K++ +++D RA+R++ +Q CY L
Sbjct: 241 GIRAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRII---------AERLQDCYGALG 291
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH W + EFDDYI PKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 292 VVHTHWRHLPNEFDDYIATPKPNGYQSIHTVVMGPQGKTVEIQIRTREMHEDAELGVAAH 351
Query: 397 WLYKE-TGNK 405
W YKE TG K
Sbjct: 352 WKYKEGTGGK 361
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 15/181 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+DT+ A +L+ ++D S ++EE G ++ LV V + I L + Q
Sbjct: 72 LDTLKASLLYVMLDAGLLSAETLEETQGTAMSTLVQSVVVMDAIRTLRQ--------QSA 123
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + +LR MLL MV+D R V+IKLA+ + +R + +A+E + LA
Sbjct: 124 PGVSQIENLRKMLLAMVEDVRAVVIKLAEAVVLLREVKKADEETRVVLAREVRDVHAPLA 183
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS--SPPLD 188
+RLG+ LK ELEDL F L P + ++ + W R+ + I VS LD
Sbjct: 184 NRLGIGQLKWELEDLAFRYLHPDTYMEI-----AHWLDGKRLDREQYIDEFVSGLQASLD 238
Query: 189 E 189
E
Sbjct: 239 E 239
>gi|117919560|ref|YP_868752.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella sp. ANA-3]
gi|117611892|gb|ABK47346.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella sp. ANA-3]
Length = 735
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 10/130 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKHLKFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWHH 301
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE GN
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKE-GN 360
Query: 405 KLQSISSMDE 414
S +E
Sbjct: 361 HSGKQSGYEE 370
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A IL V D + +I+E+FG+ +A+LVA V + I L +IN N +
Sbjct: 72 IETLQAAILFVVFDAGLLNEEAIKEKFGEPLARLVASVVTMDAIGAL-----KINPNSRS 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ LA
Sbjct: 127 -SEPQIDNIRRMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADIYAPLA 185
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELED+ F L P ++ + L
Sbjct: 186 NRLGIGQLKWELEDISFRYLHPDTYKDIAKQL 217
>gi|389730256|ref|ZP_10189422.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter sp. 115]
gi|388440729|gb|EIL97077.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter sp. 115]
Length = 712
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ L+ R K +YSI+ KM++K + ++YD RA+RV+V + + CY+ L
Sbjct: 225 GIRAELAGRPKHIYSIWKKMQKKGLEFSELYDIRAVRVLVDN---------VADCYAALG 275
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW + EFDDY+ PK +GY+SLHTAV GP G LEVQIRT +MH E G+AAH
Sbjct: 276 VVHTLWPHLPREFDDYLARPKGNGYRSLHTAVIGPRGKTLEVQIRTHEMHRANELGVAAH 335
Query: 397 WLYKETGN 404
W YKE GN
Sbjct: 336 WRYKEGGN 343
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 53/80 (66%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR +LL ++ D RVV + LA +L MR ALP + +A+A+ T I LA+RLG+W L
Sbjct: 116 LRRLLLAIIRDLRVVFVLLARQLAKMRAAAALPEDERQALARLTRDIHAPLANRLGIWQL 175
Query: 139 KAELEDLCFAVLQPQIFRKM 158
K ELEDL F LQP ++R++
Sbjct: 176 KWELEDLAFRFLQPDVYRRI 195
>gi|357038708|ref|ZP_09100505.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfotomaculum gibsoniae DSM
7213]
gi|355359500|gb|EHG07262.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfotomaculum gibsoniae DSM
7213]
Length = 725
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 91/141 (64%), Gaps = 13/141 (9%)
Query: 269 LISTSYIPGMEVTLSS----RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLH 324
+IS + MEV +++ R K+LYSI+ KM+++ + +++YD A+RV+V
Sbjct: 215 IISVLHKKMMEVKINAEIQGRPKNLYSIYMKMQKQQLEFNQIYDVMAVRVLVD------- 267
Query: 325 GPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQK 384
+++ CY++L VH LW+PI G F DYI PK + YQSLHT V P G LE+QIRT +
Sbjct: 268 --SVRDCYAVLGTVHTLWVPIPGRFKDYIAMPKSNMYQSLHTTVVSPQGDPLEIQIRTWE 325
Query: 385 MHEYAEHGLAAHWLYKETGNK 405
MH +E+G+AAHW YKE G K
Sbjct: 326 MHRTSEYGIAAHWRYKEGGGK 346
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 102/172 (59%), Gaps = 14/172 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+DT+VAG+LHD V+D +L IE+ FG EVA+LV GV++LS + + R++
Sbjct: 62 MDTLVAGLLHDTVEDTGTTLEDIEKYFGREVAQLVDGVTKLSRLEYRSKEERQVE----- 116
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+LR M L M D RVVLIKLADRLHNMRT+ K R +A ETL I+ LA
Sbjct: 117 -------NLRKMFLAMARDIRVVLIKLADRLHNMRTLQYHLEHKQREIALETLEIFAPLA 169
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
RLG++ LK ELEDL P+ + ++ ADL + + R Y R I +++
Sbjct: 170 HRLGIYRLKWELEDLALRFSNPEKYYEL-ADLVAR-TREKREEYIRSIISVL 219
>gi|295106146|emb|CBL03689.1| (p)ppGpp synthetase, RelA/SpoT family [Gordonibacter pamelaeae
7-10-1-b]
Length = 802
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 80/129 (62%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K LYSI+ KM +K G ++YD A+R++V P+++ CY L
Sbjct: 285 GITAQIMGRPKHLYSIYQKMTQKGKGFSEIYDLIAVRIIV---------PSVKDCYLALG 335
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT+ MH +E+G+AAH
Sbjct: 336 AVHTLWHPMPGRFKDYIAMPKYNMYQSLHTTVIGPAGRPLEVQIRTEDMHRQSEYGVAAH 395
Query: 397 WLYKETGNK 405
W YKE G K
Sbjct: 396 WRYKEKGGK 404
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 101/172 (58%), Gaps = 14/172 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V+T+ A +LHD V+D C + + EF ++VA+LV GV++++ RI V +
Sbjct: 120 VETLCAALLHDTVEDTCVTTEQVAVEFNEQVAQLVEGVTKIT----------RIEVE--S 167
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
L E+A +R M + M D RV++IKLADRLHNMRT+ AL + A+ETL I+ +A
Sbjct: 168 LSDEQAATIRKMFVAMSKDIRVIVIKLADRLHNMRTLGALREDRRIFKARETLEIYAPIA 227
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
RLG+ +K ELEDL F L+P ++++ + S R GY +I I+
Sbjct: 228 HRLGINNIKWELEDLSFYYLEPNKYKQVSRMVTE--SRAEREGYLDQIIGIL 277
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 597 SINNKVRLLRTMLRWEEQLR-SEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 655
+I+ ++ LR M+ W+++ + S L+ K+ + P EV + P GE M L
Sbjct: 408 AIDQQLAWLRQMVDWQDETQDSREFLKDLKV---------DLAPSEVFVFT-PKGEAMSL 457
Query: 656 RSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 696
R+GST D A + E G + VNG +V EL+ GD VE+
Sbjct: 458 RAGSTPVDFAYAIHTEVGNHCVGAKVNGAIVPLTYELQLGDRVEI 502
>gi|153001657|ref|YP_001367338.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica OS185]
gi|151366275|gb|ABS09275.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS185]
Length = 735
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 10/130 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKHLKFDELFDVRAVRIVTD---------RLQDCYGALGVVHTLWHH 301
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE GN
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKE-GN 360
Query: 405 KLQSISSMDE 414
S +E
Sbjct: 361 HSGKQSGYEE 370
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A IL V D + +I+E+FG+ +A+LVA V ++ I L +IN N +
Sbjct: 72 IETLQAAILFVVFDAGLLTEEAIKEKFGEPLARLVASVVTMNAIGAL-----KINPNSRS 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ LA
Sbjct: 127 T-EPQIDNIRRMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADIYAPLA 185
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELED+ F L P ++ + L
Sbjct: 186 NRLGIGQLKWELEDISFRYLHPDTYKDIAKQL 217
>gi|354596328|ref|ZP_09014345.1| (p)ppGpp synthetase I, SpoT/RelA [Brenneria sp. EniD312]
gi|353674263|gb|EHD20296.1| (p)ppGpp synthetase I, SpoT/RelA [Brenneria sp. EniD312]
Length = 743
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + ++YD RA+R+VV +Q CY L
Sbjct: 244 GVQAEIYGRPKHIYSIWRKMQKKSLSFDELYDVRAVRIVV---------ERLQDCYGALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPRGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ A +L + D +++E+FG + LV GV + I QL ++
Sbjct: 74 DSMRAALLFPIADANVVDESTLQEKFGKSIVDLVHGVRDMDAIRQLK------ATQHDSV 127
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E+ +++R MLL MV+D R V+IKLA+R+ ++R + P + A+E I+ LA+
Sbjct: 128 ASEQVDNIRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEEERVLAAKECGNIYAPLAN 187
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ LK ELED CF L P+ ++++
Sbjct: 188 RLGIGQLKWELEDFCFRYLHPEEYKRI 214
>gi|153004178|ref|YP_001378503.1| (p)ppGpp synthetase I SpoT/RelA [Anaeromyxobacter sp. Fw109-5]
gi|152027751|gb|ABS25519.1| (p)ppGpp synthetase I, SpoT/RelA [Anaeromyxobacter sp. Fw109-5]
Length = 738
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R+K +YSI+ KMR+ DV ++ D RV+V ++ CY L
Sbjct: 243 GINAQVSGRVKHVYSIWRKMRQLDVDFDQIQDVIGFRVIVD---------SVAECYESLG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H LW P+ G F DYI PKP+ YQSLHT V GP G +EVQIRT++MH AE G+AAH
Sbjct: 294 IIHSLWKPVPGRFKDYIAIPKPNLYQSLHTTVVGPRGERIEVQIRTKEMHRIAEEGVAAH 353
Query: 397 WLYKETG 403
W YKE G
Sbjct: 354 WAYKEKG 360
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 87/143 (60%), Gaps = 11/143 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+VV G+LHD ++D + I E FG E+A+LV GV++LS + T
Sbjct: 79 SVVTGLLHDTIEDTLATKEEIAELFGPEIAELVDGVTKLSQFSA-----------ANTQE 127
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M++ M D RV+L+KLADR HNMRT+ + P +A+ETL I+ LA+R
Sbjct: 128 EKQAENFRKMVVAMAKDIRVLLVKLADRTHNMRTLDHMKPESQERIARETLDIYAPLANR 187
Query: 133 LGLWALKAELEDLCFAVLQPQIF 155
LG+ LK+ELEDL F L+PQ +
Sbjct: 188 LGIQWLKSELEDLSFKYLRPQDY 210
>gi|153816124|ref|ZP_01968792.1| hypothetical protein RUMTOR_02372 [Ruminococcus torques ATCC 27756]
gi|145846609|gb|EDK23527.1| RelA/SpoT family protein [Ruminococcus torques ATCC 27756]
Length = 438
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 88/136 (64%), Gaps = 9/136 (6%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R+K +SI+ KM ++ + +VYD A+R++V +++ CY+ L +
Sbjct: 268 IEAKVYGRVKHFFSIYKKMVNQNKTLDQVYDLFAVRIIVD---------SVKDCYAALGV 318
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
+H ++ PI G F DYI PKP+ YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW
Sbjct: 319 IHEMYTPIPGRFKDYIAMPKPNMYQSLHTTLMGPSGQPFEIQIRTEEMHKTAEYGIAAHW 378
Query: 398 LYKETGNKLQSISSMD 413
YKE G+ +S+ S +
Sbjct: 379 KYKEGGDSAKSMESQE 394
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 94/151 (62%), Gaps = 11/151 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+VAG+LHD V+D +L + EFG+EVA LV GV++L ++N +Q L
Sbjct: 102 ETIVAGMLHDAVEDTDMTLDDVAGEFGEEVALLVDGVTKLG----------QLNYSQDKL 151
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A +LR M L M D RV++IKLADRLHNMRT+ + P K + A+ET+ I+ +A
Sbjct: 152 -EVQAENLRKMFLAMAKDIRVIIIKLADRLHNMRTLEFMTPTKQQEKARETMDIYAPIAQ 210
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
RLG+ +K EL+DL +P+++ + DL
Sbjct: 211 RLGISKIKTELDDLSLKYWKPEVYYNLVRDL 241
>gi|332981509|ref|YP_004462950.1| (p)ppGpp synthetase I SpoT/RelA [Mahella australiensis 50-1 BON]
gi|332699187|gb|AEE96128.1| (p)ppGpp synthetase I, SpoT/RelA [Mahella australiensis 50-1 BON]
Length = 719
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E T+ R K YSI+ KM+ + ++YD A+RV+V ++ CY++L
Sbjct: 226 GIEATVDGRPKHFYSIYKKMKYQGKAFEQIYDLMAVRVIVN---------TVRDCYAVLG 276
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H +W PI G F DYI PKP+ YQSLHT V GP G +E+Q+RT MH AE+G+AAH
Sbjct: 277 LIHTIWKPIPGRFKDYIAVPKPNMYQSLHTTVVGPQGEPVEIQVRTWDMHRTAEYGIAAH 336
Query: 397 WLYKE 401
W YKE
Sbjct: 337 WKYKE 341
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 82/143 (57%), Gaps = 12/143 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ AG+LHDV++D + + + FG E+A LV GV++L + ++
Sbjct: 63 TICAGLLHDVLEDTDYTYDDLAKLFGKEIADLVEGVTKLGKLEFQSKKE----------- 111
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A +LR M + M D RV++IKLADRLHNMRT+ L AQET+ I+ LA R
Sbjct: 112 -AQAENLRKMFIAMAKDVRVIMIKLADRLHNMRTLRYLDKESQLRNAQETMEIYAPLAHR 170
Query: 133 LGLWALKAELEDLCFAVLQPQIF 155
LG++ +K ELEDL L P+ +
Sbjct: 171 LGIFKIKWELEDLSLRYLDPEAY 193
>gi|297623247|ref|YP_003704681.1| (p)ppGpp synthetase I SpoT/RelA [Truepera radiovictrix DSM 17093]
gi|297164427|gb|ADI14138.1| (p)ppGpp synthetase I, SpoT/RelA [Truepera radiovictrix DSM 17093]
Length = 729
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 88/148 (59%), Gaps = 11/148 (7%)
Query: 256 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 315
S+ EE L +E G+ +S R K LYS++ KM+R + +++D A+R +
Sbjct: 219 SIALLEERLAQE---------GLTFEISGRSKGLYSVYRKMQRDAKNLDQIFDLMAIRAI 269
Query: 316 VGDKNG--TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDG 373
+ G ++ CY L I+H +W PI G F DY+ PKP+GYQSLHT V G G
Sbjct: 270 LTPTGGGESVEDEEKAICYRALGIIHSIWTPIPGRFKDYVAVPKPNGYQSLHTTVIGLQG 329
Query: 374 SALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+EVQIRT++MHE AE+G+AAHW YK+
Sbjct: 330 QPIEVQIRTRRMHEIAEYGVAAHWAYKQ 357
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 111/188 (59%), Gaps = 15/188 (7%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
VD ++AG+LHD V+D + IE FG V ++V G +++S + +I +
Sbjct: 62 VDALIAGLLHDTVEDTDVTFEEIEARFGAPVRRIVEGETKISKL--------KIRQLEAG 113
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
E+A +LR MLL MV D R++L+KLADRLHNMRT+ +PP K R +A+ETL I+ LA
Sbjct: 114 AEEEQAENLRQMLLAMVGDVRIILVKLADRLHNMRTLRHMPPEKQRRIARETLEIFAPLA 173
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDER 190
RLG+ +K+ELE+L F L+P+ +R ++ + + R Y +R + L+ER
Sbjct: 174 HRLGINHIKSELEELGFFYLEPERYRALQRQVRMRRAERE--AYVQRSIAL-----LEER 226
Query: 191 TASDDESF 198
A + +F
Sbjct: 227 LAQEGLTF 234
>gi|359453120|ref|ZP_09242444.1| GTP pyrophosphokinase [Pseudoalteromonas sp. BSi20495]
gi|358049751|dbj|GAA78693.1| GTP pyrophosphokinase [Pseudoalteromonas sp. BSi20495]
Length = 718
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K +YSI+ KM +K+ +++D RA+R+VV +Q CY L
Sbjct: 234 GIEAEVYGRPKHIYSIYKKMAQKNYEFDQLFDIRAMRIVV---------ERLQDCYGALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH W ++ EFDDY+ PK +GYQS+HT V GP+G +E+QIRTQ MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYVATPKQNGYQSIHTVVFGPEGKTVEIQIRTQDMHQDAELGVAAH 344
Query: 397 WLYKE 401
W+YKE
Sbjct: 345 WIYKE 349
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 9/138 (6%)
Query: 25 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 84
D L IEE+ G VA L+ GV++++ I+ L + +GT+ + +++R MLL
Sbjct: 80 DGLVPLEVIEEQLGSNVAILLTGVAQMATISTLSHQ------GKGTV---QVDNIRKMLL 130
Query: 85 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 144
MV+D R V+IKLA+++ ++R + A+ET I+ LA+RLG+ LK ELED
Sbjct: 131 TMVEDVRAVVIKLAEQVCHLRNVKDAGEEDRVIAAKETADIFAPLANRLGIGQLKWELED 190
Query: 145 LCFAVLQPQIFRKMRADL 162
L F L+P I++ + L
Sbjct: 191 LSFRYLRPDIYKNIAKQL 208
>gi|302391503|ref|YP_003827323.1| (p)ppGpp synthetase I SpoT/RelA [Acetohalobium arabaticum DSM 5501]
gi|302203580|gb|ADL12258.1| (p)ppGpp synthetase I, SpoT/RelA [Acetohalobium arabaticum DSM
5501]
Length = 734
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 85/142 (59%), Gaps = 14/142 (9%)
Query: 260 CEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDK 319
C +EK L + G++ + R K LYSI+ KM+RK+ + ++YD ALRV+V D
Sbjct: 228 CISKVEKRL-----NLEGIDAHIYGRPKHLYSIYQKMKRKNKELSEIYDLVALRVIVND- 281
Query: 320 NGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQ 379
+Q CY +L +H +W PI G DYI PK + YQSLHT V GP G LE+Q
Sbjct: 282 --------VQECYQVLGNIHEIWNPIPGRIKDYIAMPKSNMYQSLHTTVIGPKGEPLEIQ 333
Query: 380 IRTQKMHEYAEHGLAAHWLYKE 401
IRT MH AE+G+AAHW YKE
Sbjct: 334 IRTWDMHRTAEYGVAAHWRYKE 355
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
++ +LHDVV+D S + EFG+E+ LV GV++LS I R
Sbjct: 77 SITGALLHDVVEDTEVSFAQLRNEFGEEITLLVNGVTKLSKIAFKSREE----------- 125
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A LR M L M D RV+LIKL+DRLHNMRT+ L K +A+ET+ I+ LA R
Sbjct: 126 -QQAESLRKMFLAMSKDIRVILIKLSDRLHNMRTLEYLSQQKQERIARETIEIYAPLAHR 184
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ LK ELEDL F L+P + ++
Sbjct: 185 LGISTLKWELEDLSFKHLEPNKYYEL 210
>gi|300721893|ref|YP_003711171.1| (p)ppGpp synthetase I [Xenorhabdus nematophila ATCC 19061]
gi|297628388|emb|CBJ88953.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Xenorhabdus
nematophila ATCC 19061]
Length = 745
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 93/143 (65%), Gaps = 11/143 (7%)
Query: 261 EEALEKELLISTSYI--PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 318
E+ +EK ++ Y+ G+ + R K +YSI+ KM++K + +++D RA+R+VV
Sbjct: 226 EQYIEKFIITLRKYMLKEGVRGEIYGRPKHIYSIWRKMQKKSLAFGELFDVRAVRIVV-- 283
Query: 319 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 378
+Q CY+ L IVH + + EFDDY+ NPKP+GYQS+HT V GP+G LE+
Sbjct: 284 -------ERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEI 336
Query: 379 QIRTQKMHEYAEHGLAAHWLYKE 401
QIRT++MH+ AE G+AAHW YKE
Sbjct: 337 QIRTRQMHDDAELGVAAHWKYKE 359
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 6/147 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ A +L ++D ++ E FG + LV GV + I QL H +
Sbjct: 74 DSMRAALLFPILDSKLLDSETVTETFGQSITNLVHGVLEMDTIRQLKATHTDATCSV--- 130
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MV+D R V+IKLA+R+ ++R + + A+E I+ LA+
Sbjct: 131 ---QVDNVRRMLLAMVEDFRCVIIKLAERIAHLREVKDASEDERVLAAKECSNIYAPLAN 187
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ LK ELED CF L P ++K+
Sbjct: 188 RLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|91792551|ref|YP_562202.1| RelA/SpoT family protein [Shewanella denitrificans OS217]
gi|91714553|gb|ABE54479.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella denitrificans OS217]
Length = 735
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 79/117 (67%), Gaps = 9/117 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKDLKFDELFDVRAVRIVTD---------RLQDCYGALGVVHTLWHH 301
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT+ MH+ AE G+AAHW YKE
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTEAMHQDAELGVAAHWKYKE 358
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 83/152 (54%), Gaps = 6/152 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A +L ++D + +EE++G + LV+ V ++ I L + + N +
Sbjct: 72 IETLQASLLFVLLDAGKLTELKVEEDYGPRLGSLVSSVVTMNAIGAL--KASKDNRS--- 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ LA
Sbjct: 127 -GEPQIDNIRKMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADIYAPLA 185
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELEDL F L P ++ + L
Sbjct: 186 NRLGIGQLKWELEDLSFRYLHPNTYKDIAKQL 217
>gi|325282797|ref|YP_004255338.1| (p)ppGpp synthetase I, SpoT/RelA [Deinococcus proteolyticus MRP]
gi|324314606|gb|ADY25721.1| (p)ppGpp synthetase I, SpoT/RelA [Deinococcus proteolyticus MRP]
Length = 764
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 84/138 (60%), Gaps = 13/138 (9%)
Query: 280 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV-----VGDKNGT--------LHGP 326
+ +S R K L+SIF KMRR+ + +++D ALRV+ V + GT
Sbjct: 250 IDISGRSKHLWSIFGKMRREGKALEQIFDLMALRVILTPRRVEAREGTDPERLARAEEMR 309
Query: 327 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 386
+ CY + IVH LW P+ G F DYI PKP+GYQSLHT V G G +E+QIR+ +MH
Sbjct: 310 EKRICYHTISIVHSLWTPLPGRFKDYIAVPKPNGYQSLHTTVIGKSGQPIEIQIRSSRMH 369
Query: 387 EYAEHGLAAHWLYKETGN 404
E AE+G+AAHW+YK+ G
Sbjct: 370 EVAEYGVAAHWMYKQGGQ 387
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 100/151 (66%), Gaps = 4/151 (2%)
Query: 13 TVVAGILHDVVDDA-CESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
++ AG+LHD V+D + I +FG EV+++V G +++S +++ + ++ + +
Sbjct: 68 SIAAGLLHDTVEDVDGVTFEVITAQFGPEVSRIVEGETKVSKLSKAGSQTAEVSDDGRDM 127
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A +LR ML+ M DD R++++KLADRLHNMRT+ A+PP K + +++ET+ ++ LA
Sbjct: 128 ---QAENLRQMLIAMTDDLRIIVVKLADRLHNMRTMDAMPPEKQKRISRETMEVFAPLAH 184
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
RLG+ +K ELEDL F L P+ + ++R+ L
Sbjct: 185 RLGIGQVKWELEDLSFRYLYPEEYAELRSRL 215
>gi|384165231|ref|YP_005546610.1| GTP pyrophosphokinase (RelA/SpoT) [Bacillus amyloliquefaciens LL3]
gi|328912786|gb|AEB64382.1| GTP pyrophosphokinase (RelA/SpoT) [Bacillus amyloliquefaciens LL3]
Length = 734
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ S R K +YSI+ KM ++ +++YD A+R++VG +I+ CY++L
Sbjct: 233 NIKADFSGRPKHIYSIYRKMALQNKQFNEIYDLLAVRILVG---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAH 343
Query: 397 WLYKE 401
W YKE
Sbjct: 344 WAYKE 348
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ G LHDVV+D +L ++E F +EVA LV GV++L + +
Sbjct: 70 TIAGGFLHDVVEDTDVTLDDLKEAFSEEVAMLVDGVTKLG------------KIKYKSQE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA R
Sbjct: 118 EQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISKIKWELEDTALRYLNPQQYYRI 203
>gi|308174461|ref|YP_003921166.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens DSM 7]
gi|307607325|emb|CBI43696.1| GTP pyrophosphokinase (RelA/SpoT) [Bacillus amyloliquefaciens DSM
7]
Length = 734
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ S R K +YSI+ KM ++ +++YD A+R++VG +I+ CY++L
Sbjct: 233 NIKADFSGRPKHIYSIYRKMALQNKQFNEIYDLLAVRILVG---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAH 343
Query: 397 WLYKE 401
W YKE
Sbjct: 344 WAYKE 348
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ G LHDVV+D +L ++E F +EVA LV GV++L + +
Sbjct: 70 TIAGGFLHDVVEDTDVTLDDLKEAFSEEVAMLVDGVTKLG------------KIKYKSQE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA R
Sbjct: 118 EQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISKIKWELEDTALRYLNPQQYYRI 203
>gi|428297512|ref|YP_007135818.1| (p)ppGpp synthetase I SpoT/RelA [Calothrix sp. PCC 6303]
gi|428234056|gb|AFY99845.1| (p)ppGpp synthetase I, SpoT/RelA [Calothrix sp. PCC 6303]
Length = 758
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 93/150 (62%), Gaps = 12/150 (8%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D ++ IE +FG+EV +LV GV++LS +IN T G
Sbjct: 87 IAAGFLHDVVEDTEVTVEDIESKFGEEVRRLVEGVTKLS----------KINFKSKTEG- 135
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M D RV+++KLADRLHNMRT+ + R AQET I+ LA+RL
Sbjct: 136 -QAENFRRMFLAMAQDIRVIVVKLADRLHNMRTMEVMSEESRRRNAQETRDIYAPLANRL 194
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLA 163
G+W K ELEDL F L+PQ FR+M+ +A
Sbjct: 195 GIWRFKWELEDLAFKYLEPQSFREMQKHVA 224
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 85/140 (60%), Gaps = 11/140 (7%)
Query: 277 GMEVT-LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 335
G++ T +S R K LYSIF KM+R++ +++YD A+RV+V + CY L
Sbjct: 249 GIQCTDISGRPKHLYSIFQKMQRQNKEFNEIYDLAAIRVIVTTN---------EECYRAL 299
Query: 336 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 395
++H ++ PI G F DYI PK + YQSLHT V P G LE QIRT +MH AE+G+AA
Sbjct: 300 AVLHDVFRPIPGRFKDYIGLPKSNRYQSLHTGVISPWGRPLEAQIRTLEMHRIAEYGIAA 359
Query: 396 HWLYKET-GNKLQSISSMDE 414
HW YKET G+ S DE
Sbjct: 360 HWKYKETGGSNFTQTSPSDE 379
Score = 39.7 bits (91), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 599 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 658
+ K +R +L W+ L+ S K N D V V P G+++ L +G
Sbjct: 378 DEKFTWVRQLLEWQNDLKDAQEYMDSI---KNNLFEDDVY------VFTPKGDLVALSAG 428
Query: 659 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
ST+ D A + VG VNG+++ +T+L++GDIVE+
Sbjct: 429 STSVDFAYRIHSEVGNHCGGAKVNGRMIPLSTKLQNGDIVEI 470
>gi|385815572|ref|YP_005851963.1| ppGpp synthetase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
gi|325125609|gb|ADY84939.1| ppGpp synthetase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
Length = 738
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 83/128 (64%), Gaps = 10/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 218 GIKYDISGRPKHIYSIYKKMVNKHKNFNEIYDLLAVRVIV---------PTVKDCYAVLG 268
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 269 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAH 328
Query: 397 WLYKETGN 404
W YK GN
Sbjct: 329 WAYKR-GN 335
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 92/158 (58%), Gaps = 12/158 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV AG LHD V+D + I+E+FG +VA +V GV++L+ + H+
Sbjct: 54 DTVAAGFLHDTVEDTSVTNDDIKEKFGADVAFIVDGVTKLNKYE--YKSHKEF------- 104
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
A + R ML+ M D RV+L+KLADRLHNM T+ L P K R +A ETL I+ LA
Sbjct: 105 ---LAENHRKMLIAMAKDLRVILVKLADRLHNMHTLEHLRPDKQRRIAAETLDIYAPLAD 161
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
RLG+ +K +LED+ F + P+ + K+ + + + S R
Sbjct: 162 RLGIGTIKWKLEDMSFHYMNPEAYYKIVSMMDAKRSER 199
>gi|20807650|ref|NP_622821.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Thermoanaerobacter tengcongensis MB4]
gi|20516195|gb|AAM24425.1| Guanosine polyphosphate pyrophosphohydrolases/synthetases
[Thermoanaerobacter tengcongensis MB4]
Length = 718
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIPAEVDGRPKHFYSIYKKMKTQNKTFEEIYDLLAIRIIVN---------TVKDCYGVLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI G F DYI PKP+ YQSLHT V GP G EVQIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEVQIRTWEMHKTAEYGIAAH 337
Query: 397 WLYKE 401
W YKE
Sbjct: 338 WRYKE 342
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 93/152 (61%), Gaps = 12/152 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ AG+LHDV++D + + EEFG E+A LV GV++L I + V Q
Sbjct: 64 TIAAGLLHDVIEDTGVTYDQLMEEFGKEIADLVDGVTKLGKIEY------KSKVEQ---- 113
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A ++R ML+ M D RV+LIKLADRLHNMRT+ LPP K + A+ETL I+ +A R
Sbjct: 114 --QAENMRKMLIAMAKDIRVILIKLADRLHNMRTLKYLPPDKQKEKAEETLEIYAPIAHR 171
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLAS 164
LG+ +K ELEDLC L P+ + + +A+
Sbjct: 172 LGISKIKWELEDLCLRYLHPEEYYDLVEKVAA 203
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 593 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 652
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDKKLVWLRQLLEWQKELKDPKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 653 MRLRSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 698
+ L +GST D A ++G VNG++V N +LK GDIVE+ V
Sbjct: 396 ISLPAGSTPIDFAYSIHTEIGHRMNGAKVNGRIVPINYQLKTGDIVEILV 445
>gi|414071298|ref|ZP_11407269.1| GTP pyrophosphokinase [Pseudoalteromonas sp. Bsw20308]
gi|410806262|gb|EKS12257.1| GTP pyrophosphokinase [Pseudoalteromonas sp. Bsw20308]
Length = 718
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K +YSI+ KM +K+ +++D RA+R+VV +Q CY L
Sbjct: 234 GIEAEVYGRPKHIYSIYKKMAQKNYEFDQLFDIRAMRIVV---------ERLQDCYGALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH W ++ EFDDY+ PK +GYQS+HT V GP+G +E+QIRTQ MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYVATPKQNGYQSIHTVVFGPEGKTVEIQIRTQDMHQDAELGVAAH 344
Query: 397 WLYKE 401
W+YKE
Sbjct: 345 WIYKE 349
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 9/138 (6%)
Query: 25 DACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 84
D L IEE+ G VA L+ GV++++ I+ L + +GT+ + +++R MLL
Sbjct: 80 DGLVPLEVIEEQLGSNVAILLTGVAQMATISTLSHQ------GKGTV---QVDNIRKMLL 130
Query: 85 GMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELED 144
MV+D R V+IKLA+++ ++R + A+ET I+ LA+RLG+ LK ELED
Sbjct: 131 TMVEDVRAVVIKLAEQVCHLRNVKDAGEEDRVIAAKETADIFAPLANRLGIGQLKWELED 190
Query: 145 LCFAVLQPQIFRKMRADL 162
L F L+P I++ + L
Sbjct: 191 LSFRYLRPDIYKNIAKQL 208
>gi|254479350|ref|ZP_05092687.1| RelA/SpoT family protein [Carboxydibrachium pacificum DSM 12653]
gi|214034716|gb|EEB75453.1| RelA/SpoT family protein [Carboxydibrachium pacificum DSM 12653]
Length = 720
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 229 GIPAEVDGRPKHFYSIYKKMKTQNKTFEEIYDLLAIRIIVN---------TVKDCYGVLG 279
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI G F DYI PKP+ YQSLHT V GP G EVQIRT +MH+ AE+G+AAH
Sbjct: 280 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEVQIRTWEMHKTAEYGIAAH 339
Query: 397 WLYKE 401
W YKE
Sbjct: 340 WRYKE 344
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 93/152 (61%), Gaps = 12/152 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ AG+LHDV++D + + EEFG E+A LV GV++L I + V Q
Sbjct: 66 TIAAGLLHDVIEDTGVTYDQLMEEFGKEIADLVDGVTKLGKIEY------KSKVEQ---- 115
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A ++R ML+ M D RV+LIKLADRLHNMRT+ LPP K + A+ETL I+ +A R
Sbjct: 116 --QAENMRKMLIAMAKDIRVILIKLADRLHNMRTLKYLPPDKQKEKAEETLEIYAPIAHR 173
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLAS 164
LG+ +K ELEDLC L P+ + + +A+
Sbjct: 174 LGISKIKWELEDLCLRYLHPEEYYDLVEKVAA 205
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 593 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 652
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 347 TTEDEFDKKLVWLRQLLEWQKELKDPKEFMETL---KIDLFTDEV------FVFTPKGDV 397
Query: 653 MRLRSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 698
+ L +GST D A ++G VNG++V N +LK GDIVE+ V
Sbjct: 398 ISLPAGSTPIDFAYSIHTEIGHRMNGAKVNGRIVPINYQLKTGDIVEILV 447
>gi|415885635|ref|ZP_11547563.1| GTP diphosphokinase [Bacillus methanolicus MGA3]
gi|387591304|gb|EIJ83623.1| GTP diphosphokinase [Bacillus methanolicus MGA3]
Length = 731
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I
Sbjct: 234 IKAEISGRPKHIYSIYRKMALQNKQFNEIYDLLAVRIVVN---------SIKDCYAVLGI 284
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE+G+AAHW
Sbjct: 285 IHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHRIAEYGIAAHW 344
Query: 398 LYKETGNKLQSISSMDE 414
YKE G + SS +E
Sbjct: 345 AYKE-GKSVNENSSFEE 360
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 85/146 (58%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV AG LHDV++D +L + E F DEVA LV GV++L I + H
Sbjct: 70 TVAAGFLHDVIEDTDVTLEEMREAFNDEVAMLVDGVTKLGKIK--YKSHE---------- 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA R
Sbjct: 118 EQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPLEKQRRISNETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISKIKWELEDTALRYLNPQQYYRI 203
>gi|384160293|ref|YP_005542366.1| GTP pyrophosphokinase (RelA/SpoT) [Bacillus amyloliquefaciens
TA208]
gi|384169371|ref|YP_005550749.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens XH7]
gi|328554381|gb|AEB24873.1| GTP pyrophosphokinase (RelA/SpoT) [Bacillus amyloliquefaciens
TA208]
gi|341828650|gb|AEK89901.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens XH7]
Length = 734
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ S R K +YSI+ KM ++ +++YD A+R++VG +I+ CY++L
Sbjct: 233 NIKADFSGRPKHIYSIYRKMALQNKQFNEIYDLLAVRILVG---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAH 343
Query: 397 WLYKE 401
W YKE
Sbjct: 344 WAYKE 348
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ G LHDVV+D +L ++E F +EVA LV GV++L + +
Sbjct: 70 TIAGGFLHDVVEDTDVTLDDLKEAFSEEVAMLVDGVTKLG------------KIKYKSQE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA R
Sbjct: 118 EQQAENHRKIFVAMAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISKIKWELEDTALRYLNPQQYYRI 203
>gi|386347702|ref|YP_006045951.1| (p)ppGpp synthetase I SpoT/RelA [Spirochaeta thermophila DSM 6578]
gi|339412669|gb|AEJ62234.1| (p)ppGpp synthetase I, SpoT/RelA [Spirochaeta thermophila DSM 6578]
Length = 662
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++V + R K LYSI+ KM+RK + ++YD +R++ + CY+LL
Sbjct: 231 GIKVEIQMRRKHLYSIYQKMKRKARPLEEIYDVLGIRLLCNTETE---------CYTLLG 281
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVHRL+ P++G F DYI PK + YQSLHT V P G+ +EVQIRT +MH AE+G+AAH
Sbjct: 282 IVHRLYKPLEGRFKDYIAMPKANRYQSLHTTVMVPGGTLVEVQIRTHQMHRTAEYGIAAH 341
Query: 397 WLYKE 401
WLYKE
Sbjct: 342 WLYKE 346
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 91/143 (63%), Gaps = 12/143 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T++A +LHD ++D + I FG+EVA LV GV+++S L R+R+I
Sbjct: 68 TLIAALLHDTIEDTGATRDEIASRFGEEVALLVEGVTKIS---SLRARNRKIQA------ 118
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
A +R MLL M D RV+LIKLAD+LHNMRT+ LPPAK +A+A E L I+ LA R
Sbjct: 119 ---AESIRKMLLAMAKDIRVILIKLADKLHNMRTLQYLPPAKQKAIATECLEIYAPLAER 175
Query: 133 LGLWALKAELEDLCFAVLQPQIF 155
LG+ +LK ELEDL LQP+++
Sbjct: 176 LGMSSLKDELEDLALKHLQPEVY 198
>gi|154686901|ref|YP_001422062.1| RelA [Bacillus amyloliquefaciens FZB42]
gi|375363176|ref|YP_005131215.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|384266310|ref|YP_005422017.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
gi|385265645|ref|ZP_10043732.1| GTP diphosphokinase [Bacillus sp. 5B6]
gi|387899344|ref|YP_006329640.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens Y2]
gi|394991954|ref|ZP_10384748.1| RelA [Bacillus sp. 916]
gi|421730833|ref|ZP_16169959.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|429506052|ref|YP_007187236.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|451346089|ref|YP_007444720.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens IT-45]
gi|452856418|ref|YP_007498101.1| GTP pyrophosphokinase (RelA/SpoT) [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|154352752|gb|ABS74831.1| RelA [Bacillus amyloliquefaciens FZB42]
gi|371569170|emb|CCF06020.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|380499663|emb|CCG50701.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
gi|385150141|gb|EIF14078.1| GTP diphosphokinase [Bacillus sp. 5B6]
gi|387173454|gb|AFJ62915.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens Y2]
gi|393807166|gb|EJD68491.1| RelA [Bacillus sp. 916]
gi|407074987|gb|EKE47974.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|429487642|gb|AFZ91566.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|449849847|gb|AGF26839.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens IT-45]
gi|452080678|emb|CCP22443.1| GTP pyrophosphokinase (RelA/SpoT) [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 734
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ S R K +YSI+ KM ++ +++YD A+R++VG +I+ CY++L
Sbjct: 233 NIKADFSGRPKHIYSIYRKMALQNKQFNEIYDLLAVRILVG---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAH 343
Query: 397 WLYKE 401
W YKE
Sbjct: 344 WAYKE 348
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ G LHDVV+D +L ++E F +EVA LV GV++L + +
Sbjct: 70 TIAGGFLHDVVEDTDVTLDDLKEAFSEEVAMLVDGVTKLG------------KIKYKSQE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA R
Sbjct: 118 EQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISKIKWELEDTALRYLNPQQYYRI 203
>gi|52081239|ref|YP_080030.1| GTP pyrophosphokinase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319644794|ref|ZP_07999027.1| GTP pyrophosphokinase [Bacillus sp. BT1B_CT2]
gi|404490119|ref|YP_006714225.1| GTP pyrophosphokinase RelA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423683219|ref|ZP_17658058.1| GTP pyrophosphokinase [Bacillus licheniformis WX-02]
gi|52004450|gb|AAU24392.1| GTP pyrophosphokinase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52349121|gb|AAU41755.1| GTP pyrophosphokinase RelA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|317392603|gb|EFV73397.1| GTP pyrophosphokinase [Bacillus sp. BT1B_CT2]
gi|383439993|gb|EID47768.1| GTP pyrophosphokinase [Bacillus licheniformis WX-02]
Length = 733
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 82/128 (64%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIKADFSGRPKHIYSIYRKMAMQNKQFNEIYDLLAVRILVN---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGIAAH 343
Query: 397 WLYKETGN 404
W YKE N
Sbjct: 344 WAYKEGKN 351
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ G LHDVV+D +L ++E F +EVA LV GV++L + +
Sbjct: 70 TIAGGFLHDVVEDTSVTLEDLKEAFNEEVAMLVDGVTKLG------------KIKYKSQE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA R
Sbjct: 118 EQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISKIKWELEDTALRYLNPQQYYRI 203
>gi|390951903|ref|YP_006415662.1| RelA/SpoT family (p)ppGpp synthetase [Thiocystis violascens DSM
198]
gi|390428472|gb|AFL75537.1| (p)ppGpp synthetase, RelA/SpoT family [Thiocystis violascens DSM
198]
Length = 745
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ ++ R K +YSI+ KMRRK V I +++D RA+R++V + CY+ L
Sbjct: 249 GIAAEITGRPKHIYSIWKKMRRKAVDIEEIFDLRAVRILV---------KTVADCYAALG 299
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW I EFDDYI PK + YQSLHTAV GP LEVQIRT +MH +AE G+AAH
Sbjct: 300 LVHGLWKHIPKEFDDYIATPKGNLYQSLHTAVVGPGDKPLEVQIRTHEMHRHAEFGVAAH 359
Query: 397 WLYKE 401
W YKE
Sbjct: 360 WAYKE 364
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 93/152 (61%), Gaps = 6/152 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T++A +L+ +D + + +EE FG +A++V ++R+ I + I + L
Sbjct: 79 ETLIAALLNGCLDQSDMTEVQLEERFGPGIARMVGDLARIGQIANV----DAIIAAKDQL 134
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
HEE +LR +LLG+ +D RVVL+ LA+R+H MR I L P + +A++T ++ LA+
Sbjct: 135 EHEE--NLRRLLLGIAEDVRVVLVVLAERVHLMRAIKDLEPERRTKIARDTQRVYAPLAN 192
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+W +K ELEDL LQP ++++ + LA
Sbjct: 193 RLGIWQVKWELEDLSLRYLQPDEYKRIASLLA 224
>gi|331090638|ref|ZP_08339489.1| hypothetical protein HMPREF9477_00132 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330401078|gb|EGG80673.1| hypothetical protein HMPREF9477_00132 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 766
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 96/162 (59%), Gaps = 17/162 (10%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R+K +SI+ KM +D + ++YD A+R++V +++ CY+ L +H ++ P
Sbjct: 268 RVKHFFSIYKKMVNQDKTVDQIYDLFAIRIIV---------DSVKDCYAALGAIHEMYTP 318
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I G F DYI PKP+ YQSLHT + GP G E+QIRT +MH+ AE+G+AAHW YKE+G
Sbjct: 319 IPGRFKDYIAMPKPNMYQSLHTTLMGPAGQPFEIQIRTVEMHKTAEYGIAAHWKYKESGG 378
Query: 405 KLQSISSMDESDIEASSSL---SKDTDDHNPL-----DTDLF 438
+S+++ E + + +DTD+ L D DLF
Sbjct: 379 SEKSVATRAEEKLSWLRQILEWQQDTDNREFLSLLKGDLDLF 420
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 88/144 (61%), Gaps = 11/144 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ AGILHDVV+D + I EEFG EVA LV GV++L QL ++ V
Sbjct: 95 ETIAAGILHDVVEDTVMTEEEITEEFGSEVALLVDGVTKLG---QLSYSADKLEV----- 146
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A +LR M L M D RV+LIKLADRLHNMRT+ + P K + A+ET+ I+ +A
Sbjct: 147 ---QAENLRKMFLAMAKDIRVILIKLADRLHNMRTLQFMRPEKQKEKARETMDIYAPIAQ 203
Query: 132 RLGLWALKAELEDLCFAVLQPQIF 155
RLG+ +K EL+DL QP +F
Sbjct: 204 RLGISKIKTELDDLALKYSQPDVF 227
>gi|282899912|ref|ZP_06307873.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Cylindrospermopsis raciborskii CS-505]
gi|281195182|gb|EFA70118.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Cylindrospermopsis raciborskii CS-505]
Length = 756
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/133 (48%), Positives = 81/133 (60%), Gaps = 9/133 (6%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K LYSI+ KM+R+ H++YD ALR++V + CY L +VH
Sbjct: 254 ISGRPKHLYSIYQKMQRQQKEFHEIYDLAALRIIVETN---------EECYRALAVVHDA 304
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 305 FCPIPGRFKDYIGLPKPNRYQSLHTCVIGLTGRPLEVQIRTMEMHHVAEYGIAAHWKYKE 364
Query: 402 TGNKLQSISSMDE 414
TG ++ DE
Sbjct: 365 TGGSTAQVTGTDE 377
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 94/156 (60%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D ++ IE++FG EV +LV GV++LS +IN T
Sbjct: 86 IAAGFLHDVVEDTEVTIEDIEQKFGHEVRQLVEGVTKLS----------KINFTSKT--E 133
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M D RV+++KLADRLHNMRT+ + R AQET I+ LA+RL
Sbjct: 134 SQAENFRRMFLSMAQDIRVIVVKLADRLHNMRTLQYMSETSRRRSAQETRDIFAPLANRL 193
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G+W +K ELEDL F L+P +R+++ +A + R
Sbjct: 194 GIWHIKWELEDLAFKYLEPDAYREIQEHVAEKRTAR 229
>gi|256752957|ref|ZP_05493784.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter ethanolicus
CCSD1]
gi|256748165|gb|EEU61242.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter ethanolicus
CCSD1]
Length = 493
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 397 WLYKE 401
W YKE
Sbjct: 338 WKYKE 342
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 100/174 (57%), Gaps = 14/174 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ T+ AG+LHDV++D + G + E FG E+A LV GV++L I + V Q
Sbjct: 62 ITTIAAGLLHDVIEDTDVTYGQLLEYFGKEIADLVDGVTKLGKIEY------KSKVEQ-- 113
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A ++R ML+ M D RV+LIKLADRLHNMRT+ LP K + A+ETL I+ +A
Sbjct: 114 ----QAENMRKMLIAMAKDIRVILIKLADRLHNMRTLKYLPLDKQKEKAEETLEIYAPIA 169
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 184
RLG+ +K ELEDLC L P+ + + +A+ + R + + I T +
Sbjct: 170 HRLGISKIKWELEDLCLRYLHPEEYYDLVEKVAA--KRKEREEFIQNIITTIKE 221
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 593 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 652
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 653 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 698
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
>gi|337750627|ref|YP_004644789.1| RelA protein [Paenibacillus mucilaginosus KNP414]
gi|379723680|ref|YP_005315811.1| RelA protein [Paenibacillus mucilaginosus 3016]
gi|386726431|ref|YP_006192757.1| RelA protein [Paenibacillus mucilaginosus K02]
gi|336301816|gb|AEI44919.1| RelA [Paenibacillus mucilaginosus KNP414]
gi|378572352|gb|AFC32662.1| RelA [Paenibacillus mucilaginosus 3016]
gi|384093556|gb|AFH64992.1| RelA protein [Paenibacillus mucilaginosus K02]
Length = 730
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 82/128 (64%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM + +++YD ALR++V + I+ CY+ L
Sbjct: 227 GIDGDISGRPKHIYSIYKKMTVRSKQFNEIYDLLALRIIVDN---------IKDCYATLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H LW P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH +E+G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPLEVQIRTFEMHRTSEYGVAAH 337
Query: 397 WLYKETGN 404
W YKE N
Sbjct: 338 WAYKEGTN 345
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+++A +LHDVV+D SL ++ E+FG A +V G+++L I +
Sbjct: 64 SIIAALLHDVVEDTTVSLETVHEKFGATCAMIVDGLTKLEKIK-----------FKSKEE 112
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
H+ N R M + M D RV+LIKLADRLHNMRT+ R +A ETL I+C +A R
Sbjct: 113 HQNEN-YRKMFVAMAQDIRVILIKLADRLHNMRTLKHQSEEAQRRIADETLEIFCPIAHR 171
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ A+K E+ED+ L PQ + ++
Sbjct: 172 LGISAIKWEMEDIALRYLNPQQYYRI 197
>gi|242050856|ref|XP_002463172.1| hypothetical protein SORBIDRAFT_02g039080 [Sorghum bicolor]
gi|241926549|gb|EER99693.1| hypothetical protein SORBIDRAFT_02g039080 [Sorghum bicolor]
Length = 583
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 102/165 (61%), Gaps = 7/165 (4%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
V AG+LHD VDDA G I E FG VA LV GVS+LS++++L RR N
Sbjct: 147 VAAGLLHDTVDDAGLGYGFISEHFGAGVADLVKGVSKLSHLSKLARR------NNTASRI 200
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+EA+ LR++ L M +D R VLIKLADRLHNMRT+ +LP K ++ A+ETL I+ LA++L
Sbjct: 201 DEADRLRIVFLAM-EDARAVLIKLADRLHNMRTLDSLPKNKQQSFAKETLEIFAPLANQL 259
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRI 178
G+ K +LE+LCF L P F ++ L ++ +RR+
Sbjct: 260 GILNWKEQLENLCFKYLCPDKFDELSTSLTEFYNRDMIAAATRRL 304
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 83/132 (62%), Gaps = 11/132 (8%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R KSLYSI+SKM RK + + ++YD +RV++ +K C++ L+I+H LW
Sbjct: 321 RHKSLYSIYSKMARKKLVMDEIYDIHGVRVILENKAD---------CFAALEIIHHLWPR 371
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I G+F DYI +PKP+ YQSLHT V + LE+QIRT+ MH AE G+AAHW YKE
Sbjct: 372 IPGKFKDYINSPKPNRYQSLHTVVLTEETLPLEIQIRTRDMHLQAEFGIAAHWRYKEVAA 431
Query: 405 K--LQSISSMDE 414
+ S+S M E
Sbjct: 432 RSCCTSVSEMVE 443
>gi|116513948|ref|YP_812854.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|116093263|gb|ABJ58416.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
Length = 754
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 83/128 (64%), Gaps = 10/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 234 GIKYDISGRPKHIYSIYKKMVNKHKNFNEIYDLLAVRVIV---------PTVKDCYAVLG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 285 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAH 344
Query: 397 WLYKETGN 404
W YK GN
Sbjct: 345 WAYKR-GN 351
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 93/159 (58%), Gaps = 13/159 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV AG LHD V+D + I+E+FG +VA +V GV++L+ + H+
Sbjct: 69 DTVAAGFLHDTVEDTSVTNDDIKEKFGADVAFIVDGVTKLNKYE--YKSHKEF------- 119
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTI-YALPPAKARAVAQETLLIWCSLA 130
A + R ML+ M D RV+L+KLADRLHNM T+ + L P K R +A ETL I+ LA
Sbjct: 120 ---LAENHRKMLIAMAKDLRVILVKLADRLHNMHTLEHLLRPDKQRRIAAETLDIYAPLA 176
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
RLG+ +K +LED+ F + P+ + K+ + + + S R
Sbjct: 177 DRLGIGTIKWKLEDMSFHYMNPEAYYKIVSMMDAKRSER 215
>gi|418036575|ref|ZP_12674991.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1519]
gi|354687625|gb|EHE87705.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1519]
Length = 753
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 83/128 (64%), Gaps = 10/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 233 GIKYDISGRPKHIYSIYKKMVNKHKNFNEIYDLLAVRVIV---------PTVKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 284 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAH 343
Query: 397 WLYKETGN 404
W YK GN
Sbjct: 344 WAYKR-GN 350
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 92/158 (58%), Gaps = 12/158 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV AG LHD V+D + I+E+FG +VA +V GV++L+ + H+
Sbjct: 69 DTVAAGFLHDTVEDTSVTNDDIKEKFGADVAFIVDGVTKLNKYE--YKSHKEF------- 119
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
A + R ML+ M D RV+L+KLADRLHNM T+ L P K R +A ETL I+ LA
Sbjct: 120 ---LAENHRKMLIAMAKDLRVILVKLADRLHNMHTLEHLRPDKQRRIAAETLDIYAPLAD 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
RLG+ +K +LED+ F + P+ + K+ + + + S R
Sbjct: 177 RLGIGTIKWKLEDMSFHYMNPEAYYKIVSMMDAKRSER 214
>gi|153819814|ref|ZP_01972481.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase), partial [Vibrio
cholerae NCTC 8457]
gi|126509633|gb|EAZ72227.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Vibrio cholerae
NCTC 8457]
Length = 391
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 9/132 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 82 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 132
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 133 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 192
Query: 397 WLYKETGNKLQS 408
W YKE + +S
Sbjct: 193 WKYKEGSSAARS 204
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 111 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 170
P R A+E I+ LA+RLG+ LK E+ED F QP ++++ L+
Sbjct: 5 PDEVRRVAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----R 59
Query: 171 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
R+ + I VS + + + + + +H+ S+ + + + + FD L D R
Sbjct: 60 RIVREQYIRDFVSDLRAEMKQSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 115
>gi|408791615|ref|ZP_11203225.1| putative GTP diphosphokinase [Leptospira meyeri serovar Hardjo str.
Went 5]
gi|408463025|gb|EKJ86750.1| putative GTP diphosphokinase [Leptospira meyeri serovar Hardjo str.
Went 5]
Length = 684
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 80/127 (62%), Gaps = 9/127 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ + R K YSI+ KM K+ +++D RA+R++ + I+ CY +L I
Sbjct: 235 IDARIDGRAKHFYSIYRKMVTKEKSFSEIFDLRAVRIITNE---------IKDCYGVLGI 285
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW PI G F DYI PK + YQSLHT V GPDG +EVQIRT+ M+ AE+G+AAHW
Sbjct: 286 VHTLWTPIPGRFKDYIATPKTNLYQSLHTTVFGPDGRPMEVQIRTKDMNAIAENGVAAHW 345
Query: 398 LYKETGN 404
YKE+ N
Sbjct: 346 AYKESTN 352
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 100/169 (59%), Gaps = 14/169 (8%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHDVV+D S + EFG+++A LV GV+++S I +
Sbjct: 72 IAAGLLHDVVEDTSYSKEDMAREFGEDIAALVEGVTKISEIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R MLL + D RV+LIKLAD+ HN+RT+ P K + +A+E L ++ +A RL
Sbjct: 120 EAAENIRKMLLATIKDVRVMLIKLADKTHNVRTLKFQPEEKQKRIAKEVLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
G++ +K ELEDL F L P+ +++++ +++ S R+ Y +I I+
Sbjct: 180 GVYKVKFELEDLAFQSLHPEEYQEIKKRVSAKKSERDE--YIEKIKIIL 226
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
V V P GEI+ + G+T D A + VGL + VNG++V TELK GD VE+
Sbjct: 402 VFVFTPKGEIIEMPKGATVLDYAFRIHTDVGLHARGGKVNGRMVTLRTELKSGDQVEI 459
>gi|242373934|ref|ZP_04819508.1| GTP pyrophosphokinase [Staphylococcus epidermidis M23864:W1]
gi|242348358|gb|EES39960.1| GTP pyrophosphokinase [Staphylococcus epidermidis M23864:W1]
Length = 734
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 87/145 (60%), Gaps = 19/145 (13%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K +YSI+ KM ++ +++D A+RV+V +I CY++L +VH L
Sbjct: 243 ISGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILGLVHTL 293
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 294 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAAHWAYKE 353
Query: 402 TG----------NKLQSISSMDESD 416
NKL + + E+D
Sbjct: 354 GKTVNEKTQDFQNKLNWLKELAETD 378
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 84/145 (57%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++ F +EVA++V GV++L V +
Sbjct: 75 TIVAGFLHDVIEDTPYTFEDVKSMFNEEVARIVDGVTKLK------------KVKYRSKE 122
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 123 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQVRISKETLEIYAPLAHR 182
Query: 133 LGLWALKAELEDLCFAVLQP-QIFR 156
LG+ +K ELED + Q FR
Sbjct: 183 LGINTIKWELEDTALRYIDSVQYFR 207
>gi|258653541|ref|YP_003202697.1| (p)ppGpp synthetase I SpoT/RelA [Nakamurella multipartita DSM
44233]
gi|258556766|gb|ACV79708.1| (p)ppGpp synthetase I, SpoT/RelA [Nakamurella multipartita DSM
44233]
Length = 822
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 96/161 (59%), Gaps = 15/161 (9%)
Query: 255 TSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRV 314
T L A + LE EL + + IPG V R K YSI+ KM+ + +++D A+R+
Sbjct: 306 TYLAAVTQQLEAEL--TAAKIPGQVV---GRGKHYYSIYQKMKARGREFDEIHDLVAVRI 360
Query: 315 VVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGS 374
+VG +++ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G
Sbjct: 361 LVG---------SVRECYAAMGVVHALWAPMPGRFKDYIAQPRYGVYQSLHTTVIGPEGK 411
Query: 375 ALEVQIRTQKMHEYAEHGLAAHWLYKET-GNKLQSISSMDE 414
LEVQIRT MH AE+G+AAHW YKET G + +++DE
Sbjct: 412 PLEVQIRTFDMHHTAEYGIAAHWRYKETRGTHAGASATVDE 452
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 88/143 (61%), Gaps = 14/143 (9%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VA +LHD V+D +L + +FGDEVA LV GV++L ++ T
Sbjct: 162 TLVAALLHDTVEDTEYTLEKVTADFGDEVAHLVDGVTKLD----------KVRFGDAT-- 209
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
EA +R M++ M +DPRV+++KLADRLHNMRT+ LPP K A+ETL + LA R
Sbjct: 210 --EAETIRKMIIAMAEDPRVLVVKLADRLHNMRTMRFLPPDKQARKARETLEVLAPLAHR 267
Query: 133 LGLWALKAELEDLCFAVLQPQIF 155
LG+ +K ELEDL F++L + +
Sbjct: 268 LGMATIKWELEDLAFSILHSKRY 290
>gi|104773939|ref|YP_618919.1| GTP pyrophosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|103423020|emb|CAI97706.1| GTP pyrophosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
Length = 753
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 83/128 (64%), Gaps = 10/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 233 GIKYDISGRPKHIYSIYKKMVNKHKNFNEIYDLLAVRVIV---------PTVKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 284 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAH 343
Query: 397 WLYKETGN 404
W YK GN
Sbjct: 344 WAYKR-GN 350
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 92/158 (58%), Gaps = 12/158 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DTV AG LHD V+D + I+E+FG +VA +V GV++L+ + H+
Sbjct: 69 DTVAAGFLHDTVEDTSVTNDDIKEKFGADVAFIVDGVTKLNKYE--YKSHKEF------- 119
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
A + R ML+ M D RV+L+KLADRLHNM T+ L P K R +A ETL I+ LA
Sbjct: 120 ---LAENHRKMLIAMAKDLRVILVKLADRLHNMHTLEHLRPDKQRRIAAETLDIYAPLAD 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
RLG+ +K +LED+ F + P+ + K+ + + + S R
Sbjct: 177 RLGIGTIKWKLEDMSFHYMNPEAYYKIVSMMDAKRSER 214
>gi|442804848|ref|YP_007372997.1| GTP pyrophosphokinase RelA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740698|gb|AGC68387.1| GTP pyrophosphokinase RelA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 759
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 105/190 (55%), Gaps = 22/190 (11%)
Query: 221 LSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 280
LS R K +DLA+ ++K + I T E+A+E G+E
Sbjct: 218 LSFRYLHEKEYYDLAEKIAKKRKEREEYIENIMKT---VAEKAMEM----------GIEA 264
Query: 281 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 340
+ R K LYSI+ KM+R+ + ++YD A+RV+V ++ CY++L +VH
Sbjct: 265 HIDGRPKHLYSIYMKMKRQHKELDQIYDLFAIRVIVN---------TVKDCYAVLGLVHE 315
Query: 341 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 400
L+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT +MH AE G+AAHW YK
Sbjct: 316 LYKPMPGRFKDYISMPKPNMYQSLHTTVIGPEGIPFEVQIRTWEMHRIAEVGIAAHWKYK 375
Query: 401 ETGNKLQSIS 410
E G + +S
Sbjct: 376 EGGRQNDDLS 385
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 99/176 (56%), Gaps = 14/176 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TVVAG+LHD V+D+ + + + FG+E+A LV GV++L+ I N+ +
Sbjct: 98 TVVAGMLHDTVEDSSFTYENTLKNFGEEIANLVDGVTKLAKIPY---------TNKQEI- 147
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A +LR M L M D RV++IKLADRLHNMRT+ P K +AQETL I+ LA R
Sbjct: 148 --QAENLRKMFLAMSKDIRVIIIKLADRLHNMRTLKYKPREKQIEIAQETLDIYAPLAHR 205
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLD 188
LG++ +K ELEDL F L + + + +A + R Y I V+ ++
Sbjct: 206 LGIYKVKWELEDLSFRYLHEKEYYDLAEKIAK--KRKEREEYIENIMKTVAEKAME 259
>gi|390455260|ref|ZP_10240788.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)
[Paenibacillus peoriae KCTC 3763]
Length = 725
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 85/138 (61%), Gaps = 10/138 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ LS R K +YS+F KM K+ +++YD A+R++V + I+ CY+ L
Sbjct: 227 GIQADLSGRPKHIYSVFKKMTTKNKQFNEIYDLLAIRIIVDN---------IKDCYATLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H LW P+ G F DYI PK + YQSLHT V GP+G EVQIRT MH AE G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKANMYQSLHTTVVGPNGEPTEVQIRTVDMHRTAEFGIAAH 337
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE GN + + D+
Sbjct: 338 WAYKE-GNGANNTNFEDK 354
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 85/146 (58%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+++A +LHDVV+D SL I E FGD A LV G+++L I Q + + N N
Sbjct: 64 SIIAALLHDVVEDTTVSLAQIREHFGDTCAMLVDGLTKLERI-QFRSKEEQQNEN----- 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
R M + M D RV++IKLADRLHNMRT+ R +A ETL I+C +A+R
Sbjct: 118 ------YRKMFIAMAQDIRVIVIKLADRLHNMRTLKYQSEESQRRIAYETLEIFCPIANR 171
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ A+K E+ED+ L PQ + ++
Sbjct: 172 LGISAIKWEMEDIALRYLNPQQYYRI 197
>gi|121535597|ref|ZP_01667404.1| (p)ppGpp synthetase I, SpoT/RelA [Thermosinus carboxydivorans Nor1]
gi|121305837|gb|EAX46772.1| (p)ppGpp synthetase I, SpoT/RelA [Thermosinus carboxydivorans Nor1]
Length = 735
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 96/146 (65%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ AG+LHDVV+D +L IE++FG E+A LV GV++LS + + +++
Sbjct: 70 TISAGLLHDVVEDTPVTLEEIEKQFGKEIAMLVDGVTKLSRMEYKSKEEQQLE------- 122
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
R M L M D RVVLIKLADRLHNMRT+ +PPAK + +A+ETL I+ LA+R
Sbjct: 123 -----SYRKMFLAMAKDIRVVLIKLADRLHNMRTLKYMPPAKQKEIARETLEIFAPLANR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG++++K ELEDL F L+P+ + ++
Sbjct: 178 LGIFSIKWELEDLAFRFLEPEKYYEL 203
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 79/128 (61%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K YSI+ KM++ + + ++YD A+RV+V I+ CY+ L
Sbjct: 233 GIKAEIQGRPKHFYSIYKKMQKDNKDLSEIYDLSAVRVIVD---------TIKDCYAALG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH LW PI G F DYI PK + YQSLHT V G G LE+QIRT +MH +E+G+AAH
Sbjct: 284 IVHTLWKPIPGRFKDYIAMPKSNMYQSLHTTVIGLQGQPLEIQIRTVEMHRTSEYGIAAH 343
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 344 WRYKEGGK 351
>gi|251788452|ref|YP_003003173.1| GDP/GTP pyrophosphokinase [Dickeya zeae Ech1591]
gi|247537073|gb|ACT05694.1| (p)ppGpp synthetase I, SpoT/RelA [Dickeya zeae Ech1591]
Length = 745
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 GLKAEIYGRPKHIYSIWRKMQKKSLSFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 6/147 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ A +L + D ++ E FG + LV GV + I QL ++
Sbjct: 74 DSMRAAMLFPLADANVVEEDTLRETFGKNIVNLVHGVRDMDAIRQLK------ATQHDSM 127
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E+ +++R MLL MV+D R V+IKLA+R+ ++R + P + A+E I+ LA+
Sbjct: 128 ASEQVDNIRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEEERVLAAKECTNIYAPLAN 187
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ LK ELED CF L P ++++
Sbjct: 188 RLGIGQLKWELEDFCFRYLHPDEYKRI 214
>gi|375309867|ref|ZP_09775147.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)
[Paenibacillus sp. Aloe-11]
gi|375078231|gb|EHS56459.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)
[Paenibacillus sp. Aloe-11]
Length = 725
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 85/138 (61%), Gaps = 10/138 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ LS R K +YS+F KM K+ +++YD A+R++V + I+ CY+ L
Sbjct: 227 GIQADLSGRPKHIYSVFKKMTTKNKQFNEIYDLLAIRIIVDN---------IKDCYATLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H LW P+ G F DYI PK + YQSLHT V GP+G EVQIRT MH AE G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKANMYQSLHTTVVGPNGEPTEVQIRTVDMHRTAEFGIAAH 337
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE GN + + D+
Sbjct: 338 WAYKE-GNGANNTNFEDK 354
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 85/146 (58%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+++A +LHDVV+D SL I E FGD A LV G+++L I Q + + N N
Sbjct: 64 SIIAALLHDVVEDTTVSLAQIREHFGDTCAMLVDGLTKLERI-QFRSKEEQQNEN----- 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
R M + M D RV++IKLADRLHNMRT+ R +A ETL I+C +A+R
Sbjct: 118 ------YRKMFIAMAQDIRVIVIKLADRLHNMRTLKYQSEESQRRIAYETLEIFCPIANR 171
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ A+K E+ED+ L PQ + ++
Sbjct: 172 LGISAIKWEMEDIALRYLNPQQYYRI 197
>gi|354586442|ref|ZP_09004929.1| (p)ppGpp synthetase I, SpoT/RelA [Paenibacillus lactis 154]
gi|353180975|gb|EHB46516.1| (p)ppGpp synthetase I, SpoT/RelA [Paenibacillus lactis 154]
Length = 726
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ LS R K +YS+F KM K+ +++YD A+R++V + I+ CY+ L
Sbjct: 227 GIQADLSGRPKHIYSVFKKMTVKNKQFNEIYDLLAIRIIVDN---------IKDCYATLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H LW P+ G F DYI PK + YQSLHT V GP+G EVQIRT +MH AE+G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKTNMYQSLHTTVVGPNGEPTEVQIRTWEMHRTAEYGIAAH 337
Query: 397 WLYKE 401
W YKE
Sbjct: 338 WAYKE 342
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+++A +LHDVV+D SL I E FGD A LV G+++L I Q + + N N
Sbjct: 64 SIIAALLHDVVEDTTVSLDEIRERFGDTCAMLVDGLTKLERI-QFRSKEEQQNEN----- 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
R M + M D RV++IKLADRLHNMRT+ R ++ ETL I+C +A R
Sbjct: 118 ------YRKMFIAMARDIRVIVIKLADRLHNMRTLKYQSEESQRRISYETLEIFCPIAHR 171
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ A+K E+ED+ L PQ + ++
Sbjct: 172 LGISAIKWEMEDIALRYLNPQQYYRI 197
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 641 EVVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 696
++V V P GE++ L SGS D A ++ E G + VNG++V + +LK GDIVE+
Sbjct: 385 DLVFVFTPKGEVIELPSGSVPLDFAYRIHTEVGNRTIGAKVNGRIVPLDHQLKTGDIVEI 444
>gi|320155331|ref|YP_004187710.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Vibrio vulnificus
MO6-24/O]
gi|326423852|ref|NP_760472.2| GTP pyrophosphokinase [Vibrio vulnificus CMCP6]
gi|319930643|gb|ADV85507.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Vibrio vulnificus
MO6-24/O]
gi|319999223|gb|AAO09999.2| GTP pyrophosphokinase [Vibrio vulnificus CMCP6]
Length = 741
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH + + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKQMHEDSELGVAAH 353
Query: 397 WLYKE 401
W YKE
Sbjct: 354 WKYKE 358
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 8/152 (5%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V + +EE + E+ KL+ GV ++ I QL N+ +G+
Sbjct: 74 TLVAAQLFPLVSSGAFAREPLEEHYSKEIIKLIDGVDEMAAIGQL-------NITLEGSA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ LK E+ED F QP ++++ L+
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLS 218
>gi|224476731|ref|YP_002634337.1| GTP pyrophosphokinase [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222421338|emb|CAL28152.1| GTP pyrophosphokinase [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 729
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 81/120 (67%), Gaps = 9/120 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM ++ +++D A+R++V +I+ CY++L +VH L
Sbjct: 238 INGRPKHIYSIYRKMMKQKKQFDQIFDLLAVRIIVD---------SIKDCYAVLGLVHTL 288
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRTQ+MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTQEMHEIAEHGVAAHWAYKE 348
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 87/145 (60%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++ F DEVA +V GV++L + ++R +
Sbjct: 70 TIVAGFLHDVIEDTPYTFDDVKAMFNDEVAMIVEGVTKLKKV-----KYR-------SKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISKETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQP-QIFR 156
LG+ +K ELED+ + Q FR
Sbjct: 178 LGINTIKWELEDIALRYIDGVQYFR 202
>gi|195953734|ref|YP_002122024.1| (p)ppGpp synthetase I SpoT/RelA [Hydrogenobaculum sp. Y04AAS1]
gi|195933346|gb|ACG58046.1| (p)ppGpp synthetase I, SpoT/RelA [Hydrogenobaculum sp. Y04AAS1]
Length = 703
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 281 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 340
T+ R K +YSI+ K++RK++ + + D +RV+V D + CY++L IVH
Sbjct: 240 TIQYRQKHIYSIYQKLKRKNLSLEDLQDILGIRVIVED---------VAECYTVLGIVHS 290
Query: 341 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 400
++ PI G FDDYI PKP+ YQSLHTAV+GP +EVQIRT +MHE AE G+AAHW YK
Sbjct: 291 IFRPIPGSFDDYISLPKPNMYQSLHTAVEGPKKRVVEVQIRTYEMHERAEKGIAAHWAYK 350
Query: 401 ETGN 404
E +
Sbjct: 351 ENSS 354
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 89/147 (60%), Gaps = 12/147 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
++VAG+LHDVV+D ++ I++EFG ++A LV G++++ +
Sbjct: 68 SIVAGLLHDVVEDTDTTVEEIKKEFGPQIASLVDGLTKID------------KYKFSSKE 115
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
H +A + R ML M D RV++IKLADRLHNMRT+ +P K +A ET+ I+ +A R
Sbjct: 116 HAKAENYRKMLFAMSKDVRVIVIKLADRLHNMRTLDYMPRHKQLEIANETIDIYAPIAHR 175
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMR 159
LG+W++K ELEDL P+ + K++
Sbjct: 176 LGIWSIKKELEDLYLKYTHPEEYEKIK 202
>gi|28899338|ref|NP_798943.1| GTP pyrophosphokinase [Vibrio parahaemolyticus RIMD 2210633]
gi|260878970|ref|ZP_05891325.1| GTP diphosphokinase [Vibrio parahaemolyticus AN-5034]
gi|417318938|ref|ZP_12105496.1| GTP pyrophosphokinase [Vibrio parahaemolyticus 10329]
gi|28807574|dbj|BAC60827.1| GTP pyrophosphokinase [Vibrio parahaemolyticus RIMD 2210633]
gi|308090436|gb|EFO40131.1| GTP diphosphokinase [Vibrio parahaemolyticus AN-5034]
gi|328474128|gb|EGF44933.1| GTP pyrophosphokinase [Vibrio parahaemolyticus 10329]
Length = 739
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 91/138 (65%), Gaps = 12/138 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE + S S DE
Sbjct: 354 WKYKEGAS---SRSGYDE 368
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V + +EE++ E+ KL+ GV ++ I QL NV +G+
Sbjct: 74 TLVAAQLFPLVSSGAFNRELLEEKYSKEIIKLIDGVEEMAAIGQL-------NVTMEGSA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ LA R+ + I V + +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLAE-----RRIVREQYIKDFVEDLSQEMKA 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ + +H+ S+ + + + + FD L D R
Sbjct: 242 CGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|332295059|ref|YP_004436982.1| (p)ppGpp synthetase I SpoT/RelA [Thermodesulfobium narugense DSM
14796]
gi|332178162|gb|AEE13851.1| (p)ppGpp synthetase I, SpoT/RelA [Thermodesulfobium narugense DSM
14796]
Length = 779
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 91/155 (58%), Gaps = 13/155 (8%)
Query: 261 EEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVG-DK 319
+E+ +KEL + R K +YS++ K++R + I +YD LR+++G D
Sbjct: 271 QESFQKEL--------NCNFKIKRRKKHIYSVYQKLKRTNKNIDDIYDIFGLRIIIGEDV 322
Query: 320 NGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQ 379
G P I CY +L I+H L+ PI G F D+I PKP+ YQSLHT V GP G +E+Q
Sbjct: 323 EG--EDPYISSCYHVLGIIHSLFPPIPGRFKDFIAAPKPNNYQSLHTTVLGPGGVRVEIQ 380
Query: 380 IRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 414
IRT +M AE G+AAHWLYKE K SI ++E
Sbjct: 381 IRTARMDRIAEVGVAAHWLYKE--RKTSSIRDINE 413
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 90/167 (53%), Gaps = 14/167 (8%)
Query: 16 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 75
A +LHDV++D + I+ FG+++ LV GV++L + R R +
Sbjct: 118 AALLHDVLEDTQTTPEEIKTNFGEDILILVDGVTKLGKLRFKSPRER------------Q 165
Query: 76 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 135
A R M + M D RVV+IKLADRLHNMRT+ L K +A ETL I+ LA RLG+
Sbjct: 166 AESFRKMFVAMAKDIRVVVIKLADRLHNMRTLEILASEKKEHIANETLKIFAPLAHRLGM 225
Query: 136 WALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
WA+K+ELEDL L +F + + + + N V + +I I+
Sbjct: 226 WAIKSELEDLALYYLDRDMFNHILMYMEA--NINNHVNFLSKIEGIL 270
>gi|433658640|ref|YP_007276019.1| GTP pyrophosphokinase [Vibrio parahaemolyticus BB22OP]
gi|432509328|gb|AGB10845.1| GTP pyrophosphokinase [Vibrio parahaemolyticus BB22OP]
Length = 739
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 91/138 (65%), Gaps = 12/138 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE + S S DE
Sbjct: 354 WKYKEGAS---SRSGYDE 368
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V + +EE++ E+ KL+ GV ++ I QL NV +G+
Sbjct: 74 TLVAAQLFPLVSSGAFNRELLEEKYSKEIIKLIDGVEEMAAIGQL-------NVTMEGSA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ LA R+ + I V + +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLAE-----RRIVREQYIKDFVEDLSQEMKA 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ + +H+ S+ + + + + FD L D R
Sbjct: 242 CGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|452944533|ref|YP_007500698.1| (p)ppGpp synthetase I, SpoT/RelA [Hydrogenobaculum sp. HO]
gi|452882951|gb|AGG15655.1| (p)ppGpp synthetase I, SpoT/RelA [Hydrogenobaculum sp. HO]
Length = 703
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 90/153 (58%), Gaps = 22/153 (14%)
Query: 265 EKELLISTSYIPGM-------------EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARA 311
E E+ + +IP + T+ R K +YSI+ K++RK++ + + D
Sbjct: 211 ESEVYLKKYFIPKLVEAINDFFKDKKPNYTIQYRQKHIYSIYQKLKRKNLSLEDLQDILG 270
Query: 312 LRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP 371
+RV+V D + CY++L IVH ++ PI G FDDYI PKP+ YQSLHTAV+GP
Sbjct: 271 IRVIVED---------VAECYTVLGIVHSIFRPIPGSFDDYISLPKPNMYQSLHTAVEGP 321
Query: 372 DGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+EVQIRT +MHE AE G+AAHW YKE +
Sbjct: 322 KKRVVEVQIRTYEMHERAEKGIAAHWAYKENSS 354
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 88/147 (59%), Gaps = 12/147 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
++VAG+LHDVV+D ++ I+ EFG ++A LV G++++ +
Sbjct: 68 SIVAGLLHDVVEDTDTTVEEIKREFGPQIASLVDGLTKID------------KYKFSSKE 115
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
H +A + R ML M D RV++IKLADRLHNMRT+ +P K +A ET+ I+ +A R
Sbjct: 116 HAKAENYRKMLFAMSKDVRVIVIKLADRLHNMRTLDYMPRHKQLEIANETIDIYAPIAHR 175
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMR 159
LG+W++K ELEDL P+ + K++
Sbjct: 176 LGIWSIKKELEDLYLKYTHPEEYEKIK 202
>gi|308070363|ref|YP_003871968.1| GTP pyrophosphokinase [Paenibacillus polymyxa E681]
gi|305859642|gb|ADM71430.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)
[Paenibacillus polymyxa E681]
Length = 725
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 85/138 (61%), Gaps = 10/138 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ LS R K +YS+F KM K+ +++YD A+R++V + I+ CY+ L
Sbjct: 227 GIQADLSGRPKHIYSVFKKMTTKNKQFNEIYDLLAIRIIVDN---------IKDCYATLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H LW P+ G F DYI PK + YQSLHT V GP+G EVQIRT MH AE G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKANMYQSLHTTVVGPNGEPTEVQIRTVDMHRTAEFGIAAH 337
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE GN + + D+
Sbjct: 338 WAYKE-GNGANNTNFEDK 354
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 85/146 (58%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+++A +LHDVV+D SL I E FGD A LV G+++L I Q + + N N
Sbjct: 64 SIIAALLHDVVEDTTVSLAQIREHFGDTCAMLVDGLTKLERI-QFRSKEEQQNEN----- 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
R M + M D RV++IKLADRLHNMRT+ R +A ETL I+C +A+R
Sbjct: 118 ------YRKMFIAMAQDIRVIVIKLADRLHNMRTLKYQSEESQRRIAYETLEIFCPVANR 171
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ A+K E+ED+ L PQ + ++
Sbjct: 172 LGISAIKWEMEDIALRYLNPQQYYRI 197
>gi|358051528|ref|ZP_09145719.1| GTP pyrophosphokinase [Staphylococcus simiae CCM 7213]
gi|357258969|gb|EHJ08835.1| GTP pyrophosphokinase [Staphylococcus simiae CCM 7213]
Length = 729
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 101/174 (58%), Gaps = 21/174 (12%)
Query: 261 EEALEKELLISTSYIPGMEVT--LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 318
EE +EK + ++ + M++ ++ R K +YSI+ KM ++ +++D A+RV+V
Sbjct: 215 EEYIEKAIDKISTEMERMQIAGEINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN- 273
Query: 319 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 378
+I CY++L +VH LW P+ G F DYI PK + YQSLHT V GP+G LE+
Sbjct: 274 --------SINDCYAVLGLVHTLWKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEI 325
Query: 379 QIRTQKMHEYAEHGLAAHWLYKE----------TGNKLQSISSMDESDIEASSS 422
QIRT MHE AEHG+AAHW YKE NKL + + E+D +S +
Sbjct: 326 QIRTFDMHEIAEHGVAAHWAYKEGKTVNEKDQSYQNKLNWLKELAEADHTSSDA 379
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPRDKQIRISRETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDNVQYFR 202
>gi|226328918|ref|ZP_03804436.1| hypothetical protein PROPEN_02820 [Proteus penneri ATCC 35198]
gi|225202104|gb|EEG84458.1| RelA/SpoT family protein [Proteus penneri ATCC 35198]
Length = 745
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++V + R K +YSI+ KM++K++ +++D RA+R+VV +Q CY+ L
Sbjct: 244 NVDVDIYGRPKHIYSIWRKMKKKNLAFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPEGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 12/215 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ A +L + ++ + E FGD + LV GV + I QL H
Sbjct: 74 DSMRAALLFPLAEENLIGQEIVTEHFGDAIWSLVRGVMEMDAIRQLKATH------TNET 127
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MV+D R V+IKL++R+ ++R + + A+E I+ LA+
Sbjct: 128 SSIQVDNVRRMLLSMVEDFRCVVIKLSERIAHLREVKDATEDERVLAAKECFNIYAPLAN 187
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK ELED CF L P ++K +AS+ R R+ + I VS+ +
Sbjct: 188 RLGIGQLKWELEDFCFRYLHPDEYKK----IASLLHER-RIDREQYIDNFVSTVRGYMKE 242
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ D +H+ S+ + + + + FD L D R
Sbjct: 243 ENVDVDIYGRPKHIYSIWRKMKKKNLAFDELFDVR 277
>gi|260363769|ref|ZP_05776538.1| RelA/SpoT domain protein [Vibrio parahaemolyticus K5030]
gi|308111236|gb|EFO48776.1| RelA/SpoT domain protein [Vibrio parahaemolyticus K5030]
Length = 573
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 91/138 (65%), Gaps = 12/138 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE + S S DE
Sbjct: 354 WKYKEGAS---SRSGYDE 368
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V + +EE++ E+ KL+ GV ++ I QL NV +G+
Sbjct: 74 TLVAAQLFPLVSSGAFNRELLEEKYSKEIIKLIDGVEEMAAIGQL-------NVTMEGSA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ LA R+ + I V + +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLAE-----RRIVREQYIKDFVEDLSQEMKA 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ + +H+ S+ + + + + FD L D R
Sbjct: 242 CGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|261345780|ref|ZP_05973424.1| GTP diphosphokinase [Providencia rustigianii DSM 4541]
gi|282566269|gb|EFB71804.1| GTP diphosphokinase [Providencia rustigianii DSM 4541]
Length = 743
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 88/136 (64%), Gaps = 9/136 (6%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ + R K +YSI+ KM++K + ++YD RA+R+VV +Q CY+ L I
Sbjct: 245 IQAEVYGRPKHIYSIWRKMQKKSLAFGELYDVRAVRIVV---------ERLQDCYAALGI 295
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + + EFDDY+ NPKP+GYQS+HT V GP+G LE+QIRT++MHE AE G+AAHW
Sbjct: 296 VHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEIQIRTRQMHEDAELGVAAHW 355
Query: 398 LYKETGNKLQSISSMD 413
YKE + SS +
Sbjct: 356 KYKEGSTGVGKGSSYE 371
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 14/152 (9%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++++ A +L +V++ S+ +EFG + LV GV + I +L + T
Sbjct: 73 IESLQAALLFSLVEEGKLDDQSVIDEFGQSIHALVKGVIEMDAIREL----------KAT 122
Query: 71 LGHE----EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 126
+E + +++R MLL MV+D R V+IKLA+R+ ++R + + A+E I+
Sbjct: 123 QSNETSSVQVDNIRRMLLSMVEDFRCVVIKLAERIAHLREVKDASEDERVLAAKECSNIY 182
Query: 127 CSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+ LK ELED CF L P ++K+
Sbjct: 183 APLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|444426175|ref|ZP_21221599.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Vibrio campbellii CAIM
519 = NBRC 15631]
gi|444240588|gb|ELU52126.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Vibrio campbellii CAIM
519 = NBRC 15631]
Length = 739
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VCGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKEMHEDSELGVA 351
Query: 395 AHWLYKE 401
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V +EE++ E+ KL+ GV ++ I QL NV G
Sbjct: 74 TLVAAQLFPLVSSDAFDRELLEEKYSKEIIKLIDGVDEMAAIGQL-------NVTMDGGA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ LK E+ED F QP+ ++++ LA
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPETYKQIAKQLA 218
>gi|427731593|ref|YP_007077830.1| RelA/SpoT family (p)ppGpp synthetase [Nostoc sp. PCC 7524]
gi|427367512|gb|AFY50233.1| (p)ppGpp synthetase, RelA/SpoT family [Nostoc sp. PCC 7524]
Length = 797
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 82/133 (61%), Gaps = 9/133 (6%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K LYSI+ KM+R+ H++YD ALR++V + CY L IVH
Sbjct: 301 ISGRPKHLYSIYQKMQRQQKEFHEIYDLAALRIIVQGN---------EECYRALAIVHDA 351
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 352 FRPIPGRFKDYIGLPKPNRYQSLHTGVIGLTGRPLEVQIRTMEMHRIAEYGIAAHWKYKE 411
Query: 402 TGNKLQSISSMDE 414
TG +++ DE
Sbjct: 412 TGGSHSQLTTSDE 424
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 94/156 (60%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D ++ IE+ FG EV +LV GV++LS +IN T
Sbjct: 133 IAAGFLHDVVEDTDVTIEEIEQHFGPEVRQLVEGVTKLS----------KINFKSKT--E 180
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M D RV+++KLADRLHNMRT+ + R AQET I+ LA+RL
Sbjct: 181 SQAENFRRMFLAMAQDIRVIVVKLADRLHNMRTLQYMSEDSRRRSAQETRDIFAPLANRL 240
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G+W +K ELEDL F L+P+ FR+++ ++ + R
Sbjct: 241 GIWRIKWELEDLAFKYLEPEAFRQIQQHVSEKRTAR 276
>gi|374325387|ref|YP_005078516.1| GTP pyrophosphokinase [Paenibacillus terrae HPL-003]
gi|357204396|gb|AET62293.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)
[Paenibacillus terrae HPL-003]
Length = 725
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 81/128 (63%), Gaps = 10/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ LS R K +YS+F KM K+ +++YD A+R++V + I+ CY+ L
Sbjct: 227 GIQADLSGRPKHIYSVFKKMTTKNKQFNEIYDLLAIRIIVDN---------IKDCYATLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H LW P+ G F DYI PK + YQSLHT V GP+G EVQIRT MH AE G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKANMYQSLHTTVVGPNGEPTEVQIRTVDMHRTAEFGIAAH 337
Query: 397 WLYKETGN 404
W YKE GN
Sbjct: 338 WAYKE-GN 344
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+++A +LHDVV+D SL I E FGD LV G+++L I Q + + N N
Sbjct: 64 SIIAALLHDVVEDTTVSLAQIREHFGDTCGMLVDGLTKLERI-QFRSKEEQQNEN----- 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
R M + M D RV++IKLADRLHNMRT+ R +A ETL I+C +A+R
Sbjct: 118 ------YRKMFIAMAQDIRVIVIKLADRLHNMRTLKYQSEESQRRIAYETLEIFCPIANR 171
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ A+K E+ED+ L PQ + ++
Sbjct: 172 LGISAIKWEMEDIALRYLNPQQYYRI 197
>gi|403744544|ref|ZP_10953770.1| (p)ppGpp synthetase I, SpoT/RelA [Alicyclobacillus hesperidum
URH17-3-68]
gi|403122078|gb|EJY56326.1| (p)ppGpp synthetase I, SpoT/RelA [Alicyclobacillus hesperidum
URH17-3-68]
Length = 725
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM + +++YD A+RV V +I+ CY +L
Sbjct: 234 NLKAEVSGRAKHIYSIYRKMTTQHKEFNEIYDLFAIRVTV---------ESIKDCYGVLG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MH+ AE+G+AAH
Sbjct: 285 VVHTMWKPMPGRFKDYIAMPKANMYQSLHTTVIGPNGEPLEIQIRTWEMHQTAEYGIAAH 344
Query: 397 WLYKETGNK 405
W+YKE+G++
Sbjct: 345 WVYKESGSR 353
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 87/145 (60%), Gaps = 12/145 (8%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
VVA +LHDVV+D + +I + FG EVA LV GV++L +RI + +
Sbjct: 72 VVAALLHDVVEDTSVTDSNIVQTFGAEVASLVDGVTKL----------KRIRFD--SREE 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
++A +LR M + M D RV++IKLADRLHNMRT+ PA A+ETL I+ LA RL
Sbjct: 120 QQAENLRKMFMAMARDIRVLIIKLADRLHNMRTLRYQTPATQMRKARETLEIFAPLAHRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKM 158
G+ +K ELED+ L PQ + ++
Sbjct: 180 GINTIKWELEDISLRYLNPQQYYRI 204
>gi|310643542|ref|YP_003948300.1| GTP pyrophosphokinase [Paenibacillus polymyxa SC2]
gi|309248492|gb|ADO58059.1| GTP pyrophosphokinase (ATP:GTP 3-pyrophosphotransferase)(PpGpp
synthetase I) ((P)ppGpp synthetase) [Paenibacillus
polymyxa SC2]
gi|392304294|emb|CCI70657.1| GTP pyrophosphokinase [Paenibacillus polymyxa M1]
Length = 725
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ LS R K +YS+F KM K+ +++YD A+R++V + I+ CY+ L
Sbjct: 227 GIQADLSGRPKHIYSVFKKMTTKNKQFNEIYDLLAIRIIVDN---------IKDCYATLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H LW P+ G F DYI PK + YQSLHT V GP+G EVQIRT MH AE G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKANMYQSLHTTVVGPNGEPTEVQIRTVDMHRTAEFGIAAH 337
Query: 397 WLYKETG 403
W YKE
Sbjct: 338 WAYKENN 344
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 85/146 (58%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+++A +LHDVV+D SL I E FGD A LV G+++L I Q + + N N
Sbjct: 64 SIIAALLHDVVEDTTVSLAQIREHFGDTCAMLVDGLTKLERI-QFRSKEEQQNEN----- 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
R M + M D RV++IKLADRLHNMRT+ R +A ETL I+C +A+R
Sbjct: 118 ------YRKMFIAMAQDIRVIVIKLADRLHNMRTLKYQSEESQRRIAYETLEIFCPVANR 171
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ A+K E+ED+ L PQ + ++
Sbjct: 172 LGISAIKWEMEDIALRYLNPQQYYRI 197
>gi|442609952|ref|ZP_21024680.1| GTP pyrophosphokinase [Pseudoalteromonas luteoviolacea B = ATCC
29581]
gi|441748544|emb|CCQ10742.1| GTP pyrophosphokinase [Pseudoalteromonas luteoviolacea B = ATCC
29581]
Length = 718
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K +YSI+ KM +K +++D RA+RVVV + I+ CY L
Sbjct: 234 GIEAQVYGRPKHIYSIYKKMMQKHYEFDQLFDIRAMRVVVKE---------IRDCYGALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH W ++ EFDDYI PK +GYQS+HT V GP+G +E+QIRT+ MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYIATPKQNGYQSIHTVVFGPEGKTVEIQIRTEAMHQDAELGVAAH 344
Query: 397 WLYKE 401
WLYKE
Sbjct: 345 WLYKE 349
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 102/198 (51%), Gaps = 14/198 (7%)
Query: 29 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVD 88
++ ++EEFG + L+ GV +++ I+ L +QG G + +++R MLL MV+
Sbjct: 83 NIDGLKEEFGANLVLLLEGVDQMATISTLAH-------HQGK-GAVQVDNIRRMLLAMVE 134
Query: 89 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 148
D R V+IKLA+++ +R + + A+ T I+ LA+RLG+ LK ELEDL F
Sbjct: 135 DVRAVVIKLAEQICYLRAVKNADEDERVIAAKATANIFAPLANRLGIGQLKWELEDLSFR 194
Query: 149 VLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 208
L P+ ++ + LA +R Y + +V++ R A + +H+ S+
Sbjct: 195 YLHPEKYKSIAKQLAD--KRLDREAYMENMVNLVTTKL---REAGIEAQVYGRPKHIYSI 249
Query: 209 -KDLLEAVVPFDILSDRR 225
K +++ FD L D R
Sbjct: 250 YKKMMQKHYEFDQLFDIR 267
>gi|375266658|ref|YP_005024101.1| GTP pyrophosphokinase [Vibrio sp. EJY3]
gi|369841978|gb|AEX23122.1| GTP pyrophosphokinase [Vibrio sp. EJY3]
Length = 739
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 397 WLYKE 401
W YKE
Sbjct: 354 WKYKE 358
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 107/215 (49%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V +EE++ E+ KL+ GV ++ I QL NV +G
Sbjct: 74 TLVAAQLFPLVSSGAFKRELLEEKYSKEIIKLIDGVEEMAAIGQL-------NVTMEGGA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP+ ++++ L+ R+ + I V + +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPETYKQIAKQLSE-----RRIVREQYIKDFVEDLTEEMKA 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ + +H+ S+ + + + + FD L D R
Sbjct: 242 CGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|153835470|ref|ZP_01988137.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Vibrio harveyi
HY01]
gi|148867981|gb|EDL67178.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Vibrio harveyi
HY01]
Length = 739
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VCGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKEMHEDSELGVA 351
Query: 395 AHWLYKE 401
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V +EE++ E+ KL+ GV ++ I QL NV G
Sbjct: 74 TLVAAQLFPLVSSGAFDRELLEEKYSKEIIKLIDGVDEMAAIGQL-------NVTMDGGA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ LK E+ED F QP+ ++++ LA
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPETYKQIAKQLA 218
>gi|409201635|ref|ZP_11229838.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Pseudoalteromonas
flavipulchra JG1]
Length = 717
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM +K +++D RA+RVVV + IQ CY+ L
Sbjct: 234 GIKAQVYGRPKHIYSIYKKMAQKSYEFEQLFDIRAMRVVVDE---------IQDCYAALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH W ++ EFDDYI PK +GYQS+HT V GP+G +E+QIRT+ MH AE G+AAH
Sbjct: 285 IVHTSWRHLNKEFDDYIATPKQNGYQSIHTVVFGPEGKTVEIQIRTEAMHRDAELGVAAH 344
Query: 397 WLYKE 401
W+YKE
Sbjct: 345 WMYKE 349
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 9/135 (6%)
Query: 29 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVD 88
SL +EE G ++ L+ GV + I+ L + + G + +++R MLL MV+
Sbjct: 84 SLEQVEEALGKNISLLLRGVENMDTISTLAHQ---------SSGKVQVDNIRRMLLAMVE 134
Query: 89 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 148
D R V+IKLA+++ ++R + + A+ I+ LA+RLG+ LK ELEDL F
Sbjct: 135 DVRAVVIKLAEQICHLRAVKKASEEERVVAAKAAANIFAPLANRLGIGQLKWELEDLSFR 194
Query: 149 VLQPQIFRKMRADLA 163
L P ++ + L+
Sbjct: 195 YLHPDTYKSIAKKLS 209
>gi|452994812|emb|CCQ93581.1| GTP pyrophosphokinase (RelA/SpoT) [Clostridium ultunense Esp]
Length = 721
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 78/123 (63%), Gaps = 10/123 (8%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R KS YSI+ KM ++ +++D A+RV+V I+ CY +L IVH +
Sbjct: 231 ISGRPKSFYSIYKKMVYQNKSFEQIFDLTAIRVIVD---------TIKDCYGVLGIVHTM 281
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 282 WKPIPGRFKDYIAMPKPNMYQSLHTTVIGPEGEIFEVQIRTWDMHRTAEYGIAAHWKYKE 341
Query: 402 TGN 404
GN
Sbjct: 342 -GN 343
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 96/168 (57%), Gaps = 18/168 (10%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG+LHDV++D S ++ +EFG+EVA LV GV++L + ++
Sbjct: 63 TIVAGLLHDVLEDTSVSYETLVKEFGEEVANLVDGVTKLKKLKYKTKQE----------- 111
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A +LR M++ M D RV++IKLADRLHNMRT+ + K + A ETL I+ LA R
Sbjct: 112 -SQAENLRKMVMAMAKDIRVIIIKLADRLHNMRTLEYMSEEKKKEKALETLEIYAPLAHR 170
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRI 178
LG+ +K ELEDL L P+ + DL S R R Y +RI
Sbjct: 171 LGISKIKWELEDLSLRYLDPEGY----YDLVDKVSKRRKEREAYIQRI 214
>gi|424034024|ref|ZP_17773434.1| GTP pyrophosphokinase [Vibrio cholerae HENC-01]
gi|424034962|ref|ZP_17774309.1| GTP pyrophosphokinase [Vibrio cholerae HENC-02]
gi|408873768|gb|EKM12957.1| GTP pyrophosphokinase [Vibrio cholerae HENC-01]
gi|408900898|gb|EKM33821.1| GTP pyrophosphokinase [Vibrio cholerae HENC-02]
Length = 739
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VCGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKEMHEDSELGVA 351
Query: 395 AHWLYKE 401
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V +EE++ E+ KL+ GV ++ I QL NV G
Sbjct: 74 TLVAAQLFPLVSSGAFDRELLEEKYSKEIIKLIDGVDEMAAIGQL-------NVTMDGGA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ LK E+ED F QP+ ++++ LA
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPETYKQIAKQLA 218
>gi|422017125|ref|ZP_16363693.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Providencia
alcalifaciens Dmel2]
gi|414105830|gb|EKT67384.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Providencia
alcalifaciens Dmel2]
Length = 743
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 89/136 (65%), Gaps = 9/136 (6%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ + R K +YSI+ KM++K + ++YD RA+R+VV +Q CY+ L I
Sbjct: 245 IQAEVYGRPKHIYSIWRKMQKKSLAFGELYDVRAVRIVV---------ERLQDCYAALGI 295
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + + EFDDY+ NPKP+GYQS+HT V GP+G LE+QIRT++MHE AE G+AAHW
Sbjct: 296 VHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEIQIRTRQMHEDAELGVAAHW 355
Query: 398 LYKETGNKLQSISSMD 413
YKE + + SS +
Sbjct: 356 KYKEGASGVGKGSSYE 371
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ ++ A +L +V++ S+ ++FG + LV GV + I +L + T
Sbjct: 73 IGSLQAALLFPLVEEGKLDEQSVIDDFGQSIHALVKGVIEMDAIREL----------KAT 122
Query: 71 LGHE----EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 126
+E + +++R MLL MV+D R V+IKLA+R+ ++R + + A+E I+
Sbjct: 123 QSNETSSVQVDNIRRMLLSMVEDFRCVVIKLAERIAHLREVKDASEDERVLAAKECSNIY 182
Query: 127 CSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+ LK ELED CF L P ++K+
Sbjct: 183 APLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|408356412|ref|YP_006844943.1| GTP pyrophosphokinase [Amphibacillus xylanus NBRC 15112]
gi|407727183|dbj|BAM47181.1| GTP pyrophosphokinase [Amphibacillus xylanus NBRC 15112]
Length = 729
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 80/120 (66%), Gaps = 9/120 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
S R K +YSI+ KM ++ ++YD A+R++V +I+ CY++L I+H
Sbjct: 237 FSGRPKHIYSIYRKMMLQNKQFDEIYDLLAVRIIVN---------SIKDCYAVLGIIHTC 287
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G F DYI PKP+ YQSLHT V GP G+ LEVQIRT++MHE AE+G+AAHW YKE
Sbjct: 288 WKPMPGRFKDYIAMPKPNLYQSLHTTVIGPKGAPLEVQIRTKEMHEIAEYGIAAHWAYKE 347
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 89/147 (60%), Gaps = 12/147 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ G LHDVV+D ++L IEE F +E+A LV GV++L + +
Sbjct: 68 ETIAGGFLHDVVEDTDKTLKDIEEAFNEEIAMLVDGVTKLG------------KIQYKSQ 115
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++A + R M + M D RV+LIKLADR+HNMRT+ LPP K R +A ETL I+ LA
Sbjct: 116 EAQQAENHRKMFIAMSKDIRVILIKLADRVHNMRTLKYLPPEKQRRIANETLEIFAPLAH 175
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ A+K ELED+ L PQ + ++
Sbjct: 176 RLGISAIKWELEDVALRYLNPQQYYRI 202
>gi|295695639|ref|YP_003588877.1| (p)ppGpp synthetase I SpoT/RelA [Kyrpidia tusciae DSM 2912]
gi|295411241|gb|ADG05733.1| (p)ppGpp synthetase I, SpoT/RelA [Kyrpidia tusciae DSM 2912]
Length = 739
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 83/127 (65%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YS++ KM ++ ++YD A+RV+V + I+ CY++L
Sbjct: 249 NIKADISGRPKHIYSVYRKMVNQNKQFGEIYDLLAVRVIVDN---------IKDCYAILG 299
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PKP+ YQSLHT V GP G LE+QIRT +MH AE+G+AAH
Sbjct: 300 VVHTLWRPLPGRFKDYIAMPKPNMYQSLHTTVIGPQGEPLEIQIRTWEMHRTAEYGIAAH 359
Query: 397 WLYKETG 403
WLYK+ G
Sbjct: 360 WLYKQGG 366
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 98/166 (59%), Gaps = 14/166 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ A +LHDVV+D +L I + FG EV LV GV++L RRI T
Sbjct: 86 TLTAALLHDVVEDTPVTLEEIGKRFGPEVVALVDGVTKL----------RRIQY--ATRE 133
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A +LR MLL M D RV+LIKLADRLHNMRT+ +P K +A+ETL I+ LA R
Sbjct: 134 EQQAENLRKMLLAMAKDIRVILIKLADRLHNMRTLRHVPEQKQMRIAKETLEIFAPLAHR 193
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRI 178
LG+ ++ ELEDL L PQ + ++ A+L + R R Y +++
Sbjct: 194 LGISRIQWELEDLALRYLNPQQYYRI-ANLMTK-KRREREAYIQKV 237
>gi|255994169|ref|ZP_05427304.1| GTP diphosphokinase [Eubacterium saphenum ATCC 49989]
gi|255993837|gb|EEU03926.1| GTP diphosphokinase [Eubacterium saphenum ATCC 49989]
Length = 733
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E T+ R K YSI+ KM+ + + +++D A+R++V +K+ CY++L
Sbjct: 228 GIEYTIYGRSKHFYSIYKKMQHQKKSLDEIFDLTAIRIIVNEKSD---------CYAVLG 278
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W PI G F DYI PK + YQS+HT V G G EVQIRT+KMHE AE+G+AAH
Sbjct: 279 VVHNIWTPIPGRFKDYIAMPKMNMYQSIHTTVIGSIGRPFEVQIRTKKMHELAEYGIAAH 338
Query: 397 WLYKE 401
W YKE
Sbjct: 339 WKYKE 343
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 97/165 (58%), Gaps = 22/165 (13%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DT++AG+LHDV++D + +EE+FG +V LV GV++L GTL
Sbjct: 64 DTLIAGLLHDVIEDTDFTPEMVEEKFGSDVRHLVEGVTKL-----------------GTL 106
Query: 72 GHE-----EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 126
E +A ++R M L M D RV++IKLADRLHN+RTI + K + QETL I+
Sbjct: 107 VFETKEEVQAENMRKMFLAMSKDIRVLIIKLADRLHNLRTINYMSQDKIKLKCQETLDIY 166
Query: 127 CSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
LASRLG++++K ELED+ L P+ + +++ ++ + R +
Sbjct: 167 APLASRLGIYSIKFELEDIALKCLHPETYEELKKNVNEKKTEREK 211
>gi|258512062|ref|YP_003185496.1| (p)ppGpp synthetase I SpoT/RelA [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478788|gb|ACV59107.1| (p)ppGpp synthetase I, SpoT/RelA [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 725
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM + +++YD A+R++V +I+ CY L
Sbjct: 234 NLKADVSGRAKHIYSIYRKMVTQHKEFNEIYDLFAIRIIV---------ESIKDCYGALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MH+ AE+G+AAH
Sbjct: 285 VVHTMWKPMPGRFKDYIAMPKANMYQSLHTTVIGPNGEPLEIQIRTWEMHQTAEYGIAAH 344
Query: 397 WLYKETGNK 405
W+YKE+G+K
Sbjct: 345 WVYKESGSK 353
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 90/146 (61%), Gaps = 14/146 (9%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
++AG+LHDVV+D S +I + FG EVA LV GV++L +RI + +
Sbjct: 72 IMAGLLHDVVEDTSVSDSAIVQAFGAEVATLVDGVTKL----------KRIKFD--SREE 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTI-YALPPAKARAVAQETLLIWCSLASR 132
++A +LR M + M D RV++IKLADRLHNMRT+ Y P + R A+ETL I+ LA R
Sbjct: 120 QQAENLRKMFMAMARDIRVLIIKLADRLHNMRTLKYQSPETQVRK-ARETLEIFAPLAHR 178
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELEDL L PQ + ++
Sbjct: 179 LGINTIKWELEDLSLRYLNPQQYYRI 204
>gi|388602705|ref|ZP_10161101.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Vibrio campbellii
DS40M4]
Length = 739
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VCGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKEMHEDSELGVA 351
Query: 395 AHWLYKE 401
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V +EE++ E+ KL+ GV ++ I QL NV G
Sbjct: 74 TLVAAQLFPLVSSGACDRELLEEKYSKEIIKLIDGVDEMAAIGQL-------NVTMDGGA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ LK E+ED F QP+ ++++ LA
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPETYKQIAKQLA 218
>gi|363899872|ref|ZP_09326379.1| hypothetical protein HMPREF9625_01039 [Oribacterium sp. ACB1]
gi|395210307|ref|ZP_10399227.1| putative GTP diphosphokinase [Oribacterium sp. ACB8]
gi|361957535|gb|EHL10843.1| hypothetical protein HMPREF9625_01039 [Oribacterium sp. ACB1]
gi|394704597|gb|EJF12135.1| putative GTP diphosphokinase [Oribacterium sp. ACB8]
Length = 755
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 81/127 (63%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R+K +SI+ KM ++ I ++YD A+R++V ++ CY++L
Sbjct: 249 GIEANIKGRIKHFFSIYKKMVNQNKTIDQIYDLFAIRIIV---------ETVRDCYAVLG 299
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H+++ PI G F DYI PKP+ YQSLHT V G DG E+QIRT +MH AE G+AAH
Sbjct: 300 VIHKMYTPIPGRFKDYIAMPKPNMYQSLHTTVIGRDGVPFEIQIRTYEMHRTAEFGIAAH 359
Query: 397 WLYKETG 403
W YKE G
Sbjct: 360 WKYKEQG 366
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 92/144 (63%), Gaps = 11/144 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ AG+LHDVV+D +L +E EF +VA LV GV++L+ +N +N ++ +
Sbjct: 84 ETIAAGLLHDVVEDTGMTLKDLEAEFNPDVASLVDGVTKLTQLN--------LNSDKVEM 135
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A +LR M + M D RV++IKLADRLHN+RT+ P K + A+E+L I+ LA
Sbjct: 136 ---QAENLRKMFVSMAKDIRVIIIKLADRLHNLRTLEYQSPEKRKEKARESLEIYSPLAD 192
Query: 132 RLGLWALKAELEDLCFAVLQPQIF 155
RLG+ +K E++DL L+P+++
Sbjct: 193 RLGISKIKIEMDDLSLKYLEPEVY 216
>gi|260899634|ref|ZP_05908029.1| GTP diphosphokinase [Vibrio parahaemolyticus AQ4037]
gi|308110554|gb|EFO48094.1| GTP diphosphokinase [Vibrio parahaemolyticus AQ4037]
Length = 499
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 91/138 (65%), Gaps = 12/138 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE + S S DE
Sbjct: 354 WKYKEGAS---SRSGYDE 368
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V + +EE++ E+ KL+ GV ++ I QL NV +G+
Sbjct: 74 TLVAAQLFPLVSSGAFNRELLEEKYSKEIIKLIDGVEEMAAIGQL-------NVTMEGSA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ LA R+ + I V + +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLAE-----RRIVREQYIKDFVEDLSQEMKA 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ + +H+ S+ + + + + FD L D R
Sbjct: 242 CGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|163802965|ref|ZP_02196852.1| hybrid sensory histidine kinase BarA [Vibrio sp. AND4]
gi|159173255|gb|EDP58083.1| hybrid sensory histidine kinase BarA [Vibrio sp. AND4]
Length = 739
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VCGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKEMHEDSELGVA 351
Query: 395 AHWLYKE 401
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VA L +V +EE++ E+ KL+ GV ++ I QL + ++ GT
Sbjct: 74 TLVAAQLFPLVSSGAFDRELLEEKYSKEIIKLIDGVDEMAAIGQL-----NVAMDGGT-S 127
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+ +++R MLL MVDD R V+IKLA+R+ N+ + P A A+E I+ LA+R
Sbjct: 128 SSQVDNVRRMLLAMVDDFRCVVIKLAERISNLIEVKKAPDEVRHAAAKECANIYAPLANR 187
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
LG+ LK E+ED F Q + ++++ LA
Sbjct: 188 LGIGQLKWEIEDYAFRYQQSETYKQIAKQLA 218
>gi|414154562|ref|ZP_11410880.1| GTP pyrophosphokinase [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411453959|emb|CCO08784.1| GTP pyrophosphokinase [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 723
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 96/159 (60%), Gaps = 12/159 (7%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V TV AG+LHDVV+D +L IE FG EVA +V GV++L + + R
Sbjct: 63 VQTVAAGLLHDVVEDTGITLADIENNFGAEVANMVDGVTKLGKLQYQTKEER-------- 114
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A +LR M L M D RV+LIKLADRLHN+RT+ K + VA+ETL + +A
Sbjct: 115 ----QAENLRKMFLAMAKDIRVILIKLADRLHNLRTLQFQSERKQKEVAEETLHFFAPMA 170
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
RLG++ +K ELEDL F L+P+ +++M+A +A + R
Sbjct: 171 HRLGIYKIKWELEDLSFRYLEPEQYQRMKAQIAKSRAKR 209
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ + R K+LYSI+ KM + + ++D +A+RV+V +++ CY L
Sbjct: 228 NIKAEIQGRPKNLYSIYQKMIEQQKELKDIFDVQAVRVLVN---------SVKDCYGALG 278
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I H LW PI G F DYI PK + YQSLHT V GP+G +E+QIRT +MH AE+G+AAH
Sbjct: 279 IAHTLWKPIPGRFKDYIAMPKSNMYQSLHTTVIGPNGEPVEIQIRTWEMHRVAEYGIAAH 338
Query: 397 WLYKE 401
W YKE
Sbjct: 339 WRYKE 343
>gi|392540636|ref|ZP_10287773.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Pseudoalteromonas
piscicida JCM 20779]
Length = 717
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM +K +++D RA+RVVV + IQ CY+ L
Sbjct: 234 GIKAQVYGRPKHIYSIYKKMAQKSYEFEQLFDIRAMRVVVDE---------IQDCYAALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH W ++ EFDDYI PK +GYQS+HT V GP+G +E+QIRT+ MH AE G+AAH
Sbjct: 285 IVHTSWRHLNKEFDDYIATPKQNGYQSIHTVVFGPEGKTVEIQIRTEAMHRDAELGVAAH 344
Query: 397 WLYKE 401
W+YKE
Sbjct: 345 WMYKE 349
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 9/135 (6%)
Query: 29 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVD 88
SL +EE G ++ L+ GV + I+ L + + G + +++R MLL MV+
Sbjct: 84 SLEQVEEALGKNISLLLRGVENMDTISTLAHQ---------SSGKVQVDNIRRMLLAMVE 134
Query: 89 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 148
D R V+IKLA+++ ++R + + A+ I+ LA+RLG+ LK ELEDL F
Sbjct: 135 DVRAVVIKLAEQICHLRAVKKASEEERVVAAKAAANIFAPLANRLGIGQLKWELEDLSFR 194
Query: 149 VLQPQIFRKMRADLA 163
L P ++ + L+
Sbjct: 195 YLHPDTYKSIAKKLS 209
>gi|384135926|ref|YP_005518640.1| (p)ppGpp synthetase I SpoT/RelA [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290011|gb|AEJ44121.1| (p)ppGpp synthetase I, SpoT/RelA [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 725
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM + +++YD A+R++V +I+ CY L
Sbjct: 234 NLKADVSGRAKHIYSIYRKMVTQHKEFNEIYDLFAIRIIV---------ESIKDCYGALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MH+ AE+G+AAH
Sbjct: 285 VVHTMWKPMPGRFKDYIAMPKANMYQSLHTTVIGPNGEPLEIQIRTWEMHQTAEYGIAAH 344
Query: 397 WLYKETGNK 405
W+YKE+G+K
Sbjct: 345 WVYKESGSK 353
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 90/146 (61%), Gaps = 14/146 (9%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
++AG+LHDVV+D S +I + FG EVA LV GV++L +RI + +
Sbjct: 72 IMAGLLHDVVEDTSVSDSTIVQTFGAEVATLVDGVTKL----------KRIKFD--SREE 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTI-YALPPAKARAVAQETLLIWCSLASR 132
++A +LR M + M D RV++IKLADRLHNMRT+ Y P + R A+ETL I+ LA R
Sbjct: 120 QQAENLRKMFMAMARDIRVLIIKLADRLHNMRTLKYQSPETQVRK-ARETLEIFAPLAHR 178
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELEDL L PQ + ++
Sbjct: 179 LGINTIKWELEDLSLRYLNPQQYYRI 204
>gi|150016418|ref|YP_001308672.1| (p)ppGpp synthetase I SpoT/RelA [Clostridium beijerinckii NCIMB
8052]
gi|149902883|gb|ABR33716.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium beijerinckii NCIMB
8052]
Length = 738
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 81/128 (63%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K YSI+ KM K+ I +++D A+RV+V +++ CY +L
Sbjct: 229 GIESDIDGRPKHFYSIYKKMVSKNKSIEQIFDLTAIRVLV---------HSVKDCYGVLG 279
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH ++ PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 280 IVHTIYRPIPGRFKDYIAMPKPNMYQSLHTTVIGPQGKTFEIQIRTFEMHKTAEYGIAAH 339
Query: 397 WLYKETGN 404
W YKE N
Sbjct: 340 WKYKEGDN 347
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 94/152 (61%), Gaps = 9/152 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+VAG+LHDV++D S F E+A LV GV++L+ + ++ + T
Sbjct: 62 NTIVAGLLHDVIEDTEFSYDETVSLFNAEIANLVEGVTKLTKLGEMEYK---------TK 112
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++A+++R MLL M D RV++IKLADRLHNMRT+ +P K + A+ETL I+ LA
Sbjct: 113 EEQQADNVRKMLLAMAKDIRVIIIKLADRLHNMRTLKFMPAKKQKNKAKETLDIYAPLAH 172
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ +K ELEDLCF L + + ++ +A
Sbjct: 173 RLGMSKIKWELEDLCFRYLHEKEYYELVDSIA 204
>gi|212711298|ref|ZP_03319426.1| hypothetical protein PROVALCAL_02370 [Providencia alcalifaciens DSM
30120]
gi|212686027|gb|EEB45555.1| hypothetical protein PROVALCAL_02370 [Providencia alcalifaciens DSM
30120]
Length = 743
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 89/136 (65%), Gaps = 9/136 (6%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ + R K +YSI+ KM++K + ++YD RA+R+VV +Q CY+ L I
Sbjct: 245 IQAEVYGRPKHIYSIWRKMQKKSLAFGELYDVRAVRIVV---------ERLQDCYAALGI 295
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + + EFDDY+ NPKP+GYQS+HT V GP+G LE+QIRT++MHE AE G+AAHW
Sbjct: 296 VHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEIQIRTRQMHEDAELGVAAHW 355
Query: 398 LYKETGNKLQSISSMD 413
YKE + + SS +
Sbjct: 356 KYKEGASGVGKGSSYE 371
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ ++ A +L +V++ S+ ++FG + LV GV + I +L + T
Sbjct: 73 IGSLQAALLFPLVEEGKLDEQSVIDDFGQSIHALVKGVIEMDAIREL----------KAT 122
Query: 71 LGHE----EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 126
+E + +++R MLL MV+D R V+IKLA+R+ ++R + + A+E I+
Sbjct: 123 QSNETSSVQVDNIRRMLLSMVEDFRCVVIKLAERIAHLREVKDASEDERVLAAKECSNIY 182
Query: 127 CSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+ LK ELED CF L P ++K+
Sbjct: 183 APLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|350532411|ref|ZP_08911352.1| GTP pyrophosphokinase [Vibrio rotiferianus DAT722]
Length = 739
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VCGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKEMHEDSELGVA 351
Query: 395 AHWLYKE 401
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 8/152 (5%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V ++EE++ E+ KL+ GV ++ I QL NV +G
Sbjct: 74 TLVAAQLFPLVSSGAFDREALEEKYSKEIIKLIDGVEEMAAIGQL-------NVTMEGGA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVIIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ LK E+ED F QP+ ++++ LA
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPETYKQIAKQLA 218
>gi|359441597|ref|ZP_09231488.1| GTP pyrophosphokinase [Pseudoalteromonas sp. BSi20429]
gi|358036521|dbj|GAA67737.1| GTP pyrophosphokinase [Pseudoalteromonas sp. BSi20429]
Length = 718
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K +YSI+ KM++K+ +++D RA+R+VV +Q CY L
Sbjct: 234 GIEAQVYGRPKHIYSIYKKMQQKNYEFDQLFDIRAMRIVV---------ERLQDCYGALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH W ++ EFDDY+ PK +GYQS+HT V GP+G +E+QIRT MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYVATPKQNGYQSIHTVVFGPEGKTVEIQIRTSDMHQDAELGVAAH 344
Query: 397 WLYKE 401
W+YKE
Sbjct: 345 WMYKE 349
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 79/134 (58%), Gaps = 9/134 (6%)
Query: 29 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVD 88
SL +IEE+ G +A L+ GV++++ I+ L + +GT+ + +++R MLL MV+
Sbjct: 84 SLETIEEQLGSNIAMLLTGVAQMATISTLSHQ------GKGTM---QVDNIRKMLLTMVE 134
Query: 89 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 148
D R V+IKLA+++ ++R + A+ET I+ LA+RLG+ LK ELEDL F
Sbjct: 135 DVRAVVIKLAEQVCHLRNVKNADEEDRVIAAKETADIFAPLANRLGIGQLKWELEDLSFR 194
Query: 149 VLQPQIFRKMRADL 162
L P ++ + L
Sbjct: 195 YLHPGTYKSIAKQL 208
>gi|269960398|ref|ZP_06174771.1| GTP pyrophosphokinase [Vibrio harveyi 1DA3]
gi|424047706|ref|ZP_17785264.1| GTP pyrophosphokinase [Vibrio cholerae HENC-03]
gi|269834825|gb|EEZ88911.1| GTP pyrophosphokinase [Vibrio harveyi 1DA3]
gi|408883670|gb|EKM22449.1| GTP pyrophosphokinase [Vibrio cholerae HENC-03]
Length = 739
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VCGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKEMHEDSELGVA 351
Query: 395 AHWLYKE 401
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V +EE++ E+ KL+ GV ++ I QL NV G
Sbjct: 74 TLVAAQLFPLVSSGAFDRELLEEKYSKEIIKLIDGVDEMAAIGQL-------NVTMDGGA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ LK E+ED F QP+ ++++ LA
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPETYKQIAKQLA 218
>gi|24059853|dbj|BAC21321.1| putative RSH, disease resistance-related protein [Oryza sativa
Japonica Group]
Length = 589
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 100/154 (64%), Gaps = 7/154 (4%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
V AG+LHD VDDA GS+ +FG VA LV GVS LS++++L RR N
Sbjct: 153 VAAGLLHDTVDDAGLGYGSLSVQFGAGVADLVKGVSNLSHLSKLARR------NDTASRV 206
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+EA+ LR + L M +D R VLIKLADRLHNMRT+ +LP K + A+ETL I+ LA++L
Sbjct: 207 DEADKLRTVFLAM-EDARAVLIKLADRLHNMRTLDSLPKVKQQCFAKETLEIFAPLANQL 265
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 167
G+ K +LE+LCF L P+++ ++ ++L ++
Sbjct: 266 GILNWKEQLENLCFKYLYPELYEELSSNLLEFYN 299
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 85/135 (62%), Gaps = 12/135 (8%)
Query: 281 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 340
T+S R KS+YSI+SKM +K + + ++YD +RV++ +K C++ L+IVH
Sbjct: 323 TISGRNKSMYSIYSKMAKK-LDMDEIYDIHGVRVILDNKAD---------CFTTLEIVHH 372
Query: 341 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 400
LW I G+F DYI +PKP+ YQSLHT V + LE+QIRT+ MH AE G+AAHW YK
Sbjct: 373 LWPRIPGKFKDYINSPKPN-YQSLHTVVLSEETLPLEIQIRTRDMHLQAEFGIAAHWRYK 431
Query: 401 E-TGNKLQSISSMDE 414
E N S+ M E
Sbjct: 432 EAVRNCCSSVPEMVE 446
>gi|365920616|ref|ZP_09444942.1| putative GTP diphosphokinase [Cardiobacterium valvarum F0432]
gi|364577824|gb|EHM55070.1| putative GTP diphosphokinase [Cardiobacterium valvarum F0432]
Length = 717
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 82/122 (67%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
L R+K + SI+ KM+RK + ++ D RA+RV V + CY +L +V+ L
Sbjct: 230 LYGRVKHINSIYLKMKRKGLRFEQLNDIRAVRVEVETEAD---------CYRVLSVVNDL 280
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI EFDDYI +PK +GYQSLHT++ GP+ +EVQIRT KMHE+AE G+AAHWLYKE
Sbjct: 281 WQPIAAEFDDYIAHPKANGYQSLHTSLIGPENRVIEVQIRTSKMHEHAELGVAAHWLYKE 340
Query: 402 TG 403
G
Sbjct: 341 KG 342
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR MLL M D R V++KL ++ MR + A + + A +T + LA+RLG+ L
Sbjct: 115 LRKMLLAMASDMRAVILKLTLQVVLMRNLSAYSAQEQQRSALQTRDLLAPLANRLGIAQL 174
Query: 139 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
K+ELED VL+P I++++ +L R R Y RI ++
Sbjct: 175 KSELEDRALRVLEPDIYQEIAGELEGKRVDRER--YINRIIDLL 216
>gi|291549196|emb|CBL25458.1| (p)ppGpp synthetase, RelA/SpoT family [Ruminococcus torques L2-14]
Length = 773
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 100/158 (63%), Gaps = 11/158 (6%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+VAG+LHDVV+D +L I EFG+EVA LV GV++L ++N +Q L
Sbjct: 101 ETIVAGMLHDVVEDTTMTLDEISAEFGEEVALLVDGVTKLG----------QLNYSQDKL 150
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A +LR M L M D RV+++KLADRLHNMRT+ + PAK + ++ET+ I+ +A
Sbjct: 151 -EAQAENLRKMFLAMAKDIRVIIVKLADRLHNMRTMEFMTPAKQKEKSRETMDIYAPIAQ 209
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
RLG+ +K EL+DL QP+++ ++ DL + + R
Sbjct: 210 RLGISKIKTELDDLSLKYYQPEVYNQLVHDLNARKTER 247
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 82/126 (65%), Gaps = 9/126 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E + R+K +SI+ KM ++ + +VYD A+R++V +++ CY+ L +
Sbjct: 267 IEAKVYGRVKHFFSIYKKMVNQNKTLDQVYDLFAVRIIV---------DSVKDCYAALGV 317
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
+H ++ PI G F DYI PK + YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW
Sbjct: 318 IHEMYTPIPGRFKDYIAMPKANMYQSLHTTLIGPSGQPFEIQIRTEEMHKTAEYGIAAHW 377
Query: 398 LYKETG 403
YKETG
Sbjct: 378 KYKETG 383
>gi|406917906|gb|EKD56582.1| hypothetical protein ACD_58C00143G0003 [uncultured bacterium]
Length = 502
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 100/166 (60%), Gaps = 17/166 (10%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+ R K LYS++ K++R D I+K+YD ALR+VV +I+ CY +L I+H+
Sbjct: 250 IDGRKKHLYSLWRKLQRYDNNINKIYDMVALRIVV---------ESIEDCYKVLGIIHKT 300
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G DYI PKP+GYQSLHT V GPDG +E+QIRT +MH AE+G+AAHW Y +
Sbjct: 301 WRPLIGRIKDYIAVPKPNGYQSLHTTVFGPDGVIIEIQIRTIQMHYGAEYGIAAHWHYSQ 360
Query: 402 T-GNKLQSISSMDESDIEASSSLS----KDTDDH---NPLDTDLFQ 439
++ QS+ + ++ + L+ K TD + L+ D F+
Sbjct: 361 NKSSQKQSVKYLSNEKLDWLNDLANWQEKQTDKNELLKGLNLDFFK 406
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 92/153 (60%), Gaps = 13/153 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN---------QLLRRHRR 63
T+ A +LHD + + + SI++EFG E+ +LV GV++L I +LL+ H++
Sbjct: 64 TIAAALLHDTEESDPQIVNSIKKEFGQEIYELVEGVTKLGKIKIKKNWFLPFKLLQNHQQ 123
Query: 64 INVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETL 123
G H E+ LR MLL M D RV+LIK ADRLHNM+T+ L P K +A+ETL
Sbjct: 124 --RQNGFQRHVES--LRKMLLAMSKDIRVILIKFADRLHNMQTLKGLRPDKRLRIAEETL 179
Query: 124 LIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 156
I+ +A RLG+ LK ELE+L F + P+ ++
Sbjct: 180 EIYAPIAHRLGMGRLKGELENLSFPYVYPKEYK 212
>gi|282897317|ref|ZP_06305319.1| GTP pyrophosphokinase [Raphidiopsis brookii D9]
gi|281197969|gb|EFA72863.1| GTP pyrophosphokinase [Raphidiopsis brookii D9]
Length = 756
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/133 (48%), Positives = 81/133 (60%), Gaps = 9/133 (6%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K LYSI+ KM+R+ H++YD ALR++V + CY L +VH
Sbjct: 254 ISGRPKHLYSIYQKMQRQQKEFHEIYDLAALRIIVETN---------EECYRALAVVHDA 304
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRT +MH+ AE+G+AAHW YKE
Sbjct: 305 FCPIPGRFKDYIGLPKPNRYQSLHTGVIGLTGRPLEVQIRTMEMHQVAEYGIAAHWKYKE 364
Query: 402 TGNKLQSISSMDE 414
TG + DE
Sbjct: 365 TGGSTAQATGTDE 377
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 94/156 (60%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D ++ IE++FG EV +LV GV++LS +IN T
Sbjct: 86 IAAGFLHDVVEDTEVTIEEIEQKFGHEVRQLVEGVTKLS----------KINFTSKT--E 133
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M D RV+++KLADRLHNMRT+ + R AQET I+ LA+RL
Sbjct: 134 SQAENFRRMFLSMAQDIRVIVVKLADRLHNMRTLQYMSETSRRRSAQETRDIFAPLANRL 193
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G+W +K ELEDL F L+P +R+++ +A + R
Sbjct: 194 GIWHIKWELEDLAFKYLEPDAYREIQEHVAEKRTAR 229
>gi|311069245|ref|YP_003974168.1| GTP pyrophosphokinase RelA/SpoT [Bacillus atrophaeus 1942]
gi|419820104|ref|ZP_14343718.1| GTP pyrophosphokinase RelA/SpoT [Bacillus atrophaeus C89]
gi|310869762|gb|ADP33237.1| GTP pyrophosphokinase RelA/SpoT [Bacillus atrophaeus 1942]
gi|388475754|gb|EIM12463.1| GTP pyrophosphokinase RelA/SpoT [Bacillus atrophaeus C89]
Length = 734
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 80/120 (66%), Gaps = 9/120 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
S R K +YSI+ KM ++ +++YD A+R++VG +I+ CY++L I+H
Sbjct: 238 FSGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRILVG---------SIKDCYAVLGIIHTC 288
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAHWAYKE 348
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ G LHDVV+D +L ++E F +EVA LV GV++L + +
Sbjct: 70 TIAGGFLHDVVEDTDVTLDDLKEAFSEEVAMLVDGVTKLG------------KIKYKSQE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA R
Sbjct: 118 EQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISKIKWELEDTALRYLNPQQYYRI 203
>gi|271501841|ref|YP_003334867.1| (p)ppGpp synthetase I SpoT/RelA [Dickeya dadantii Ech586]
gi|270345396|gb|ACZ78161.1| (p)ppGpp synthetase I, SpoT/RelA [Dickeya dadantii Ech586]
Length = 745
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 GLKAEVYGRPKHIYSIWRKMQKKSLSFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 6/147 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ A +L + D ++ E FG + LV GV + I QL ++
Sbjct: 74 DSMRAAMLFPLADANVVEEDTLRETFGKNIVNLVHGVRDMDAIRQLK------ATQHDSM 127
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E+ +++R MLL MV+D R V+IKLA+R+ ++R + P + A+E I+ LA+
Sbjct: 128 ASEQVDNIRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEEERVLAAKECTNIYAPLAN 187
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ LK ELED CF L P ++++
Sbjct: 188 RLGIGQLKWELEDFCFRYLHPDEYKRI 214
>gi|258545036|ref|ZP_05705270.1| GTP diphosphokinase [Cardiobacterium hominis ATCC 15826]
gi|258519734|gb|EEV88593.1| GTP diphosphokinase [Cardiobacterium hominis ATCC 15826]
Length = 716
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 82/122 (67%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
L R+K + SI+ KM+RK + ++ D RA+RV V ++ CY L +V+ L
Sbjct: 229 LYGRVKHINSIYLKMKRKGLRFEQLNDIRAVRVEVENEAD---------CYHTLSVVNEL 279
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W PI EFDDYI +PK +GYQSLHT++ GP+ +EVQIRT KMHE+AE G+AAHWLYKE
Sbjct: 280 WQPIAEEFDDYIAHPKANGYQSLHTSLIGPENRVIEVQIRTSKMHEHAELGVAAHWLYKE 339
Query: 402 TG 403
G
Sbjct: 340 KG 341
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 79 LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWAL 138
LR MLL M D R V++KLA ++ MR + A+ + +A +T + LA+RLG+ L
Sbjct: 114 LRKMLLAMASDMRAVILKLALQVVLMRDLSRYTAAEQQRLALQTRDLLAPLANRLGIAQL 173
Query: 139 KAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
K ELED VL+P I++++ +L RV R I I+
Sbjct: 174 KWELEDRALRVLEPDIYQEISGELEG-----KRVDRERYIARII 212
>gi|333982309|ref|YP_004511519.1| RelA/SpoT family protein [Methylomonas methanica MC09]
gi|333806350|gb|AEF99019.1| RelA/SpoT family protein [Methylomonas methanica MC09]
Length = 706
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 93/159 (58%), Gaps = 18/159 (11%)
Query: 245 KVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIH 304
K VQ T L ++ALE+ + + Y R K +YSI+ KMRRK + I
Sbjct: 208 KRVQREACIETFLHDLQQALEEHHIHAKVY---------GRPKHIYSIWCKMRRKQLPIE 258
Query: 305 KVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSL 364
++YD A+RV+V D + CY++L + H W I EFDDYI NPK +GYQSL
Sbjct: 259 ELYDLLAVRVIVED---------VTACYTVLGLAHGRWQYIPKEFDDYIANPKENGYQSL 309
Query: 365 HTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 403
HT V G+ +E+QIRT+ MHE+AE G+AAHW YKE G
Sbjct: 310 HTVVVDKQGNRMEIQIRTRAMHEFAELGVAAHWRYKEGG 348
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 78/154 (50%), Gaps = 14/154 (9%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVS---RLSYINQLLRRHRRINVNQG 69
+++A IL D D ++E +FG VA LV V+ ++S NQ + NQ
Sbjct: 64 SILAAILSDSRLDDYLDETAVESQFGSVVATLVKDVNWLNKVSIYNQDM-------ANQP 116
Query: 70 TLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
+ LR MLL M D R VLIKLA R+ +R + + +A+ETL I+ L
Sbjct: 117 N----QTEILRRMLLAMTHDVRAVLIKLAYRIQRLRGLAREEEQIRKFIARETLDIYAPL 172
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
A+RLG+ K ELED+ F L P +R + LA
Sbjct: 173 ANRLGISQFKWELEDMAFRYLDPDRYRGIAKSLA 206
>gi|307719606|ref|YP_003875138.1| GTP pyrophosphokinase [Spirochaeta thermophila DSM 6192]
gi|306533331|gb|ADN02865.1| probable GTP pyrophosphokinase [Spirochaeta thermophila DSM 6192]
Length = 662
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ V + R K LYSI+ KM+RK + ++YD +R++ + CY+LL
Sbjct: 231 GIAVEIQMRRKHLYSIYQKMKRKARPLEEIYDVLGIRLLCNTETE---------CYTLLG 281
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVHRL+ P++G F DYI PK + YQSLHT V P G+ +EVQIRT +MH AE+G+AAH
Sbjct: 282 IVHRLYKPLEGRFKDYIAMPKANRYQSLHTTVMVPGGTLVEVQIRTHQMHRTAEYGIAAH 341
Query: 397 WLYKE 401
WLYKE
Sbjct: 342 WLYKE 346
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 91/143 (63%), Gaps = 12/143 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T++A +LHD ++D + I FG+EVA LV GV+++S L R+R+I
Sbjct: 68 TLIAALLHDTIEDTGTTRDEIASRFGEEVALLVEGVTKIS---SLRARNRKIQA------ 118
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
A +R MLL M D RV+LIKLAD+LHNMRT+ LPPAK +A+A E L I+ LA R
Sbjct: 119 ---AESIRKMLLAMAKDIRVILIKLADKLHNMRTLQYLPPAKQKAIATECLEIYAPLAER 175
Query: 133 LGLWALKAELEDLCFAVLQPQIF 155
LG+ +LK ELEDL LQP+++
Sbjct: 176 LGMSSLKDELEDLALKHLQPEVY 198
>gi|392533280|ref|ZP_10280417.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Pseudoalteromonas
arctica A 37-1-2]
Length = 718
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K +YSI+ KM++K+ +++D RA+R+VV +Q CY L
Sbjct: 234 GIEAQVYGRPKHIYSIYKKMQQKNYEFDQLFDIRAMRIVV---------ERLQDCYGALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH W ++ EFDDY+ PK +GYQS+HT V GP+G +E+QIRT MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYVATPKQNGYQSIHTVVFGPEGKTVEIQIRTSDMHQDAELGVAAH 344
Query: 397 WLYKE 401
W+YKE
Sbjct: 345 WMYKE 349
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 79/134 (58%), Gaps = 9/134 (6%)
Query: 29 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVD 88
SL +IEE+ G +A L+ GV++++ I+ L + +GT+ + +++R MLL MV+
Sbjct: 84 SLETIEEQLGSNIAMLLTGVAQMATISTLSHQ------GKGTM---QVDNIRKMLLTMVE 134
Query: 89 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 148
D R V+IKLA+++ ++R + A+ET I+ LA+RLG+ LK ELEDL F
Sbjct: 135 DVRAVVIKLAEQVCHLRNVKNADEEDRVIAAKETADIFAPLANRLGIGQLKWELEDLSFR 194
Query: 149 VLQPQIFRKMRADL 162
L P ++ + L
Sbjct: 195 YLHPGTYKSIAKQL 208
>gi|332532629|ref|ZP_08408505.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Pseudoalteromonas
haloplanktis ANT/505]
gi|332037845|gb|EGI74294.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Pseudoalteromonas
haloplanktis ANT/505]
Length = 718
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K +YSI+ KM++K+ +++D RA+R+VV +Q CY L
Sbjct: 234 GIEAQVYGRPKHIYSIYKKMQQKNYEFDQLFDIRAMRIVV---------ERLQDCYGALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH W ++ EFDDY+ PK +GYQS+HT V GP+G +E+QIRT MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYVATPKQNGYQSIHTVVFGPEGKTVEIQIRTSDMHQDAELGVAAH 344
Query: 397 WLYKE 401
W+YKE
Sbjct: 345 WMYKE 349
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 80/134 (59%), Gaps = 9/134 (6%)
Query: 29 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVD 88
SL +IEE+ G+ +A L+ GV++++ I+ L + +GT+ + +++R MLL MV+
Sbjct: 84 SLETIEEQLGNNIAMLLTGVAQMATISTLSHQ------GKGTM---QVDNIRKMLLTMVE 134
Query: 89 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 148
D R V+IKLA+++ ++R + A+ET I+ LA+RLG+ LK ELEDL F
Sbjct: 135 DVRAVVIKLAEQVCHLRNVKNADEEDRVIAAKETADIFAPLANRLGIGQLKWELEDLSFR 194
Query: 149 VLQPQIFRKMRADL 162
L P ++ + L
Sbjct: 195 YLHPGTYKSIAKQL 208
>gi|222637445|gb|EEE67577.1| hypothetical protein OsJ_25106 [Oryza sativa Japonica Group]
Length = 467
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 100/154 (64%), Gaps = 7/154 (4%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
V AG+LHD VDDA GS+ +FG VA LV GVS LS++++L RR N
Sbjct: 29 VAAGLLHDTVDDAGLGYGSLSVQFGAGVADLVKGVSNLSHLSKLARR------NDTASRV 82
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+EA+ LR + L M +D R VLIKLADRLHNMRT+ +LP K + A+ETL I+ LA++L
Sbjct: 83 DEADKLRTVFLAM-EDARAVLIKLADRLHNMRTLDSLPKVKQQCFAKETLEIFAPLANQL 141
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 167
G+ K +LE+LCF L P+++ ++ ++L ++
Sbjct: 142 GILNWKEQLENLCFKYLYPELYEELSSNLLEFYN 175
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 86/135 (63%), Gaps = 10/135 (7%)
Query: 281 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 340
T+S R KS+YSI+SKM RK + + ++YD +RV++ +K C++ L+IVH
Sbjct: 199 TISGRNKSMYSIYSKMARKKLDMDEIYDIHGVRVILDNKAD---------CFTTLEIVHH 249
Query: 341 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 400
LW I G+F DYI +PKP+GYQSLHT V + LE+QIRT+ MH AE G+AAHW YK
Sbjct: 250 LWPRIPGKFKDYINSPKPNGYQSLHTVVLSEETLPLEIQIRTRDMHLQAEFGIAAHWRYK 309
Query: 401 E-TGNKLQSISSMDE 414
E N S+ M E
Sbjct: 310 EAVRNCCSSVPEMVE 324
>gi|183600075|ref|ZP_02961568.1| hypothetical protein PROSTU_03608 [Providencia stuartii ATCC 25827]
gi|188022361|gb|EDU60401.1| RelA/SpoT family protein [Providencia stuartii ATCC 25827]
Length = 745
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 88/136 (64%), Gaps = 9/136 (6%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L I
Sbjct: 245 IQAEIYGRPKHIYSIWRKMKKKSLAFDELFDVRAVRIVV---------ERLQDCYAALGI 295
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + + EFDDY+ NPKP+GYQS+HT V GP+G LE+QIRT++MHE AE G+AAHW
Sbjct: 296 VHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEIQIRTRQMHEDAELGVAAHW 355
Query: 398 LYKETGNKLQSISSMD 413
YKE + SS +
Sbjct: 356 KYKEGATGVGKGSSYE 371
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 16/218 (7%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ ++ A +L +V++ ++ ++FG + +LV GV + I QL G
Sbjct: 73 IGSLQAALLFPLVEEKQLDEQAVIDDFGQSIYELVKGVLEMDAIRQLK------ATQSGE 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ ++R + + A+E I+ LA
Sbjct: 127 TSSVQVDNIRRMLLSMVEDFRCVVIKLAERIAHLREVKDATEDERVLAAKECSNIYAPLA 186
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIVSSPPLD 188
+RLG+ LK ELED CF L P+ ++K +AS+ R +R Y T + L
Sbjct: 187 NRLGIGQLKWELEDFCFRYLHPEEYKK----IASLLHERRIDREEYIDNFVTTLRKKMLK 242
Query: 189 ERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
E ++ +H+ S+ + + + + FD L D R
Sbjct: 243 ENIQAE---IYGRPKHIYSIWRKMKKKSLAFDELFDVR 277
>gi|156975784|ref|YP_001446691.1| GTP pyrophosphokinase [Vibrio harveyi ATCC BAA-1116]
gi|156527378|gb|ABU72464.1| hypothetical protein VIBHAR_03528 [Vibrio harveyi ATCC BAA-1116]
Length = 739
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VCGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVIIGPEGKTIEIQIRTKEMHEDSELGVA 351
Query: 395 AHWLYKE 401
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V +EE++ E+ KL+ GV ++ I QL NV G
Sbjct: 74 TLVAAQLFPLVSSGAFDRELLEEKYSKEIIKLIDGVDEMAAIGQL-------NVTMDGGA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ LK E+ED F QP+ ++++ LA
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPETYKQIAKQLA 218
>gi|218288848|ref|ZP_03493099.1| (p)ppGpp synthetase I, SpoT/RelA [Alicyclobacillus acidocaldarius
LAA1]
gi|218240937|gb|EED08114.1| (p)ppGpp synthetase I, SpoT/RelA [Alicyclobacillus acidocaldarius
LAA1]
Length = 725
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM + +++YD A+R++V +I+ CY L
Sbjct: 234 NLKADVSGRAKHIYSIYRKMVTQHKEFNEIYDLFAIRIIV---------ESIKDCYGALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MH+ AE+G+AAH
Sbjct: 285 VVHTMWKPMPGRFKDYIAMPKANMYQSLHTTVIGPNGEPLEIQIRTWEMHQTAEYGIAAH 344
Query: 397 WLYKETGNK 405
W+YKE+G+K
Sbjct: 345 WVYKESGSK 353
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 90/146 (61%), Gaps = 14/146 (9%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
++AG+LHDVV+D S +I + FG EVA LV GV++L +RI + +
Sbjct: 72 IMAGLLHDVVEDTSVSDSAIVQTFGAEVATLVDGVTKL----------KRIKFD--SREE 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTI-YALPPAKARAVAQETLLIWCSLASR 132
++A +LR M + M D RV++IKLADRLHNMRT+ Y P + R A+ETL I+ LA R
Sbjct: 120 QQAENLRKMFMAMARDIRVLIIKLADRLHNMRTLKYQSPETQVRK-ARETLEIFAPLAHR 178
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELEDL L PQ + ++
Sbjct: 179 LGINTIKWELEDLSLRYLNPQQYYRI 204
>gi|386742397|ref|YP_006215576.1| (p)ppGpp synthetase I [Providencia stuartii MRSN 2154]
gi|384479090|gb|AFH92885.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Providencia stuartii
MRSN 2154]
Length = 745
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 88/136 (64%), Gaps = 9/136 (6%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L I
Sbjct: 245 IQAEIYGRPKHIYSIWRKMKKKSLAFDELFDVRAVRIVV---------ERLQDCYAALGI 295
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + + EFDDY+ NPKP+GYQS+HT V GP+G LE+QIRT++MHE AE G+AAHW
Sbjct: 296 VHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEIQIRTRQMHEDAELGVAAHW 355
Query: 398 LYKETGNKLQSISSMD 413
YKE + SS +
Sbjct: 356 KYKEGATGVGKGSSYE 371
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 16/218 (7%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ ++ A +L +V++ ++ ++FG + +LV GV + I QL G
Sbjct: 73 IGSLQAALLFPLVEEKQLDEQAVIDDFGQSIYELVKGVLEMDAIRQLK------ATQSGE 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ ++R + + A+E I+ LA
Sbjct: 127 TSSVQVDNIRRMLLSMVEDFRCVVIKLAERIAHLREVKDATEDERVLAAKECSNIYAPLA 186
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIVSSPPLD 188
+RLG+ LK ELED CF L P+ ++K +AS+ R +R Y T + L
Sbjct: 187 NRLGIGQLKWELEDFCFRYLHPEEYKK----IASLLHERRIDREEYIDNFVTTLRKKMLK 242
Query: 189 ERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
E ++ +H+ S+ + + + + FD L D R
Sbjct: 243 ENIQAE---IYGRPKHIYSIWRKMKKKSLAFDELFDVR 277
>gi|221194794|ref|ZP_03567851.1| GTP pyrophosphokinase [Atopobium rimae ATCC 49626]
gi|221185698|gb|EEE18088.1| GTP pyrophosphokinase [Atopobium rimae ATCC 49626]
Length = 791
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 86/141 (60%), Gaps = 16/141 (11%)
Query: 277 GME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV---VGDKNGTLHGPAIQCCY 332
G+E ++ R K L+SI+ KM RK +YD ALRV+ VGD CY
Sbjct: 252 GLENFQITGRPKHLWSIYQKMVRKGREFSDIYDLIALRVITQSVGD------------CY 299
Query: 333 SLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHG 392
S+L VH LW P+ G F DYI PK + YQSLHT V G DG +E+QIRT +MHE +E+G
Sbjct: 300 SVLGAVHSLWHPLPGRFKDYIATPKANLYQSLHTTVIGLDGRPIEIQIRTAEMHEASEYG 359
Query: 393 LAAHWLYKETGNKLQSISSMD 413
+AAHWLYK+ GN +SS D
Sbjct: 360 IAAHWLYKKEGNSKGQMSSED 380
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 94/147 (63%), Gaps = 12/147 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DT+ A +LHD V+D +L ++ FG++VA LV GV++L+ ++ ++
Sbjct: 88 DTICAALLHDTVEDTSATLTELKNLFGEQVADLVDGVTKLT------------SIEISSM 135
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++A +LR M L M D RVV+IKLADRLHNMRT+ AL P + A+ET+ ++ LA
Sbjct: 136 DEKQALNLRKMFLAMSKDIRVVIIKLADRLHNMRTLAALAPDRRLFKARETMDVYAPLAD 195
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ ++K ELEDL F L+P+ ++++
Sbjct: 196 RLGISSIKWELEDLSFFWLEPEEYQRI 222
>gi|422009743|ref|ZP_16356726.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Providencia rettgeri
Dmel1]
gi|414093561|gb|EKT55233.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Providencia rettgeri
Dmel1]
Length = 743
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 141/284 (49%), Gaps = 27/284 (9%)
Query: 142 LEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS-----PPLDERTASDDE 196
+ +L VL+ R+++A +S S R + ++V L ER A E
Sbjct: 103 IHELVKGVLEMDAIRQLKATQSSETSSTQVDNIRRMLLSMVEDFRCVVIKLAERIAHLRE 162
Query: 197 -SFTTFDEHVLSMKDLLEAVVPF----DILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAG 251
T DE VL+ K+ P I + + F E +K AK++ +
Sbjct: 163 VKDATEDERVLAAKECSNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKKIAKLLHERR 222
Query: 252 IALTSLVACEEALEKELLISTSYI--PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 309
I EE ++ + Y+ ++ + R K +YSI+ KM++K + +++D
Sbjct: 223 IDR------EEYIDTFVTTLRKYMLKENIQADIYGRPKHIYSIWRKMQKKSLAFDELFDV 276
Query: 310 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 369
RA+R+VV +Q CY+ L IVH + + EFDDY+ NPKP+GYQS+HT V
Sbjct: 277 RAVRIVV---------ERLQDCYAALGIVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVL 327
Query: 370 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMD 413
GP+G LE+QIRT++MHE AE G+AAHW YKE + SS +
Sbjct: 328 GPNGKTLEIQIRTRQMHEDAELGVAAHWKYKEGATGIGKGSSYE 371
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 6/148 (4%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ ++ A +L +V++ + +EFG + +LV GV + I QL
Sbjct: 73 IGSLQAALLFPLVEEGKLEEQEVIDEFGQSIHELVKGVLEMDAIRQLK------ATQSSE 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ ++R + + A+E I+ LA
Sbjct: 127 TSSTQVDNIRRMLLSMVEDFRCVVIKLAERIAHLREVKDATEDERVLAAKECSNIYAPLA 186
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+ LK ELED CF L P ++K+
Sbjct: 187 NRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|153839833|ref|ZP_01992500.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase), partial [Vibrio
parahaemolyticus AQ3810]
gi|149746650|gb|EDM57638.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Vibrio
parahaemolyticus AQ3810]
Length = 483
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 91/138 (65%), Gaps = 12/138 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE + S S DE
Sbjct: 354 WKYKEGAS---SRSGYDE 368
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V + +EE++ E+ KL+ GV ++ I QL NV +G+
Sbjct: 74 TLVAAQLFPLVSSGAFNRELLEEKYSKEIIKLIDGVEEMAAIGQL-------NVTMEGSA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ LA R+ + I V + +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLAE-----RRIVREQYIKDFVEDLSQEMKA 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ + +H+ S+ + + + + FD L D R
Sbjct: 242 CGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|108804177|ref|YP_644114.1| (p)ppGpp synthetase I SpoT/RelA [Rubrobacter xylanophilus DSM 9941]
gi|108765420|gb|ABG04302.1| (p)ppGpp synthetase I, SpoT/RelA [Rubrobacter xylanophilus DSM
9941]
Length = 742
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 93/153 (60%), Gaps = 15/153 (9%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R+K YSI++KM R++ +++YD LRV+VG +++ CY L
Sbjct: 245 GIEAEVRGRVKHFYSIYNKMVRRNKEFNEIYDLAGLRVIVG---------SVRDCYGALG 295
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H +W PI G F DYI PK + YQSLHT V +G LE+QIRT++M AE+G+AAH
Sbjct: 296 VIHSVWKPIPGRFKDYIAMPKFNMYQSLHTTVMSNEGKLLEIQIRTEEMDRTAEYGIAAH 355
Query: 397 WLYKE------TGNKLQSISSMDESDIEASSSL 423
W+YKE ++L + SM E E SS+L
Sbjct: 356 WMYKEGVGENGRADRLAWLKSMMEWQQETSSAL 388
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 89/152 (58%), Gaps = 12/152 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ A +LHDV++D + + FG EVA++V GV++L + G L
Sbjct: 82 TIAAALLHDVLEDTGVTKEELAGRFGAEVAEIVDGVTKLK------------RLPSGNLE 129
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A LR M++ M D RV++IKLADRLHNMRT+ L A ETL I+ LA R
Sbjct: 130 EAQAESLRKMIVAMSRDVRVIIIKLADRLHNMRTLEYLKRETQLEKATETLEIYAPLAHR 189
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLAS 164
LG+++LK ELEDL FA L P+ + +++ +A+
Sbjct: 190 LGIYSLKWELEDLAFATLHPRRYEEIKRLVAA 221
>gi|198282856|ref|YP_002219177.1| (p)ppGpp synthetase I SpoT/RelA [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|198247377|gb|ACH82970.1| (p)ppGpp synthetase I, SpoT/RelA [Acidithiobacillus ferrooxidans
ATCC 53993]
Length = 759
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 97/183 (53%), Gaps = 25/183 (13%)
Query: 226 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 285
KR L++ K++ +K V + E ALE LL G +S R
Sbjct: 228 KRWHTLNEAVKAARGNRKEAVQK-----------IEHALEDRLLQE-----GFAAQVSGR 271
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
K +YSI+ KM++K + ++D A R++V D + CY +L +VH L+ PI
Sbjct: 272 EKHVYSIYRKMQKKGMPFGDIHDLHAFRIIVAD---------VDTCYRVLGLVHSLYRPI 322
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
G F DYI PK +GYQSLHT + GP G +EVQIRT+ MH AE G+AAHWLYK N
Sbjct: 323 PGRFKDYIAIPKSNGYQSLHTVLLGPFGHPVEVQIRTEDMHRVAEAGVAAHWLYKTGSNN 382
Query: 406 LQS 408
+
Sbjct: 383 AHA 385
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 86/141 (60%), Gaps = 12/141 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ A +LHDV++D S +I E FG EVA++V GVS+L V T
Sbjct: 100 TIQAALLHDVIEDCNISKENITERFGPEVAEMVDGVSKLG------------QVRFETRE 147
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A + R M L M D RVVLIKLADRLHNMRT+ + P K R +++ETL I+ +A R
Sbjct: 148 EAQAENFRKMFLAMSRDIRVVLIKLADRLHNMRTMGVMTPEKRRRISRETLDIYAPIAQR 207
Query: 133 LGLWALKAELEDLCFAVLQPQ 153
LG+ A++ ELE+L F+ L P+
Sbjct: 208 LGIHAIRIELEELAFSHLYPK 228
>gi|283138927|gb|ADB12530.1| putative GTP pyrophosphokinase RelA [uncultured bacterium 9F08]
Length = 736
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 82/127 (64%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K L+SI+ KM+ K + H +YD RA+RV+V ++ CY +L
Sbjct: 250 GVKADIKGRPKHLFSIWKKMKNKGLSFHDLYDVRAVRVLVD---------SVADCYHVLG 300
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW I EFDDYI PK + YQS+HTAV GP G LEVQIRT +M ++AE G+AAH
Sbjct: 301 VVHSLWPHIPKEFDDYIATPKENNYQSIHTAVVGPGGKTLEVQIRTWEMDKHAELGVAAH 360
Query: 397 WLYKETG 403
W YKE G
Sbjct: 361 WRYKEGG 367
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 95/149 (63%), Gaps = 9/149 (6%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+++ A ILHDVV+D +L + E+ G VA LV GV+++SYI +N
Sbjct: 79 ESIAAAILHDVVEDTGITLEQVAEQCGQAVAHLVDGVTKMSYIGDY-------QLNGAQQ 131
Query: 72 GHEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
G E+ A LR +LL M +D RVV+IKLADRLHNMRT+ LP K R +A+ET+ I+ L
Sbjct: 132 GKEQIKAESLRKLLLAMAEDVRVVMIKLADRLHNMRTLKHLPEEKQRRIARETMDIYAPL 191
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A+RLG+W +K ELEDL F L P ++++
Sbjct: 192 ANRLGIWQIKWELEDLSFRYLDPVTYKQV 220
>gi|255280796|ref|ZP_05345351.1| GTP diphosphokinase [Bryantella formatexigens DSM 14469]
gi|255268733|gb|EET61938.1| RelA/SpoT family protein [Marvinbryantia formatexigens DSM 14469]
Length = 774
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 87/138 (63%), Gaps = 9/138 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R+K +SI+ KM +D I ++YD A+R++V ++ CY+ L
Sbjct: 263 GIRAQVDGRVKHFFSIYKKMVNQDKTIDQIYDLFAVRIIVD---------TVKDCYAALG 313
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H ++ PI G F DYI PKP+ YQSLHT + GP+G+ E+QIRT +MH+ AE+G+AAH
Sbjct: 314 VIHEMYTPIPGRFKDYIAMPKPNMYQSLHTTLIGPNGTPFEIQIRTFEMHKTAEYGIAAH 373
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE + + SS +E
Sbjct: 374 WKYKEQSDGKKPDSSREE 391
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 11/160 (6%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ AG+LHDVV+D + I +EFG++V +LV GV++L QL +I V
Sbjct: 98 ETITAGLLHDVVEDTVMTSEEIRQEFGEDVEQLVDGVTKLG---QLSYSADKIEV----- 149
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A +LR M L M D RV+LIKLADRLHNMRT+ + P K + A+ET+ I+ +A
Sbjct: 150 ---QAENLRKMFLAMAKDIRVILIKLADRLHNMRTLKYMSPEKQKEKARETMDIYAPIAQ 206
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
RLG+ +K EL+DL LQP ++ + +A + R +
Sbjct: 207 RLGISKIKVELDDLSLKYLQPDVYYDLVEKVALRKTEREK 246
>gi|260775201|ref|ZP_05884099.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio coralliilyticus
ATCC BAA-450]
gi|260608902|gb|EEX35064.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio coralliilyticus
ATCC BAA-450]
Length = 739
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT+ MHE +E G+AAH
Sbjct: 294 AVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKDMHEDSELGVAAH 353
Query: 397 WLYKETG 403
W YKE G
Sbjct: 354 WKYKEGG 360
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 111/215 (51%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA +L VV ++EE+FG E KL+ GV ++ + QL NV +G+
Sbjct: 74 TLVAALLFPVVSSGAYEREALEEDFGKETIKLIDGVEEMAALGQL-------NVTMEGSA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P +A A+E I+ LA+
Sbjct: 127 ASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRQAAAKECSNIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ L+ R+ + IT V + +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----RRIVREQYITDFVDDLSNEITS 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+ + + +H+ S+ + + + + FD L D R
Sbjct: 242 SGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|332298737|ref|YP_004440659.1| (p)ppGpp synthetase I SpoT/RelA [Treponema brennaborense DSM 12168]
gi|332181840|gb|AEE17528.1| (p)ppGpp synthetase I, SpoT/RelA [Treponema brennaborense DSM
12168]
Length = 615
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 90/143 (62%), Gaps = 11/143 (7%)
Query: 262 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 321
E +KE+ + S G+E+ +SSR K YSI+ KMR+++ +++D ALRV+
Sbjct: 228 EKAQKEIYRAASR-AGIEIAVSSRAKHFYSIYQKMRKRNKAADELFDLLALRVICNTSAE 286
Query: 322 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 381
CY+L+ +VH LW P+DG F DYI PK +GYQSLHT V +G LE+QIR
Sbjct: 287 ---------CYTLVGLVHNLWKPLDGRFKDYIAMPKANGYQSLHTTVLC-EGMPLEIQIR 336
Query: 382 TQKMHEYAEHGLAAHWLYKETGN 404
T+ MH AE+G+A+HWLYK+ N
Sbjct: 337 TKDMHSVAEYGVASHWLYKKGTN 359
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 91/152 (59%), Gaps = 12/152 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DT+VAG LH+V+ +E FG V ++++G ++++ + + + TL
Sbjct: 78 DTIVAGFLHNVLSLETVDPADVESRFGSAVFRIISGTAKIT----------NLKIQKKTL 127
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A+ +R ML M+DD RV+L+KLADRL MR + ++ P + +AQE + IW LA+
Sbjct: 128 --HQADSIRKMLFAMIDDIRVILVKLADRLDRMRNLSSVEPDVQKLIAQEVIDIWAPLAN 185
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ ++K+ELEDL P ++ ++++ +A
Sbjct: 186 RLGMSSVKSELEDLSLKFTNPDVYAQLKSIVA 217
>gi|302335523|ref|YP_003800730.1| (p)ppGpp synthetase I SpoT/RelA [Olsenella uli DSM 7084]
gi|301319363|gb|ADK67850.1| (p)ppGpp synthetase I, SpoT/RelA [Olsenella uli DSM 7084]
Length = 781
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 90/148 (60%), Gaps = 18/148 (12%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV---VGDKNGTLHGPAIQCC 331
I G ++ R K L+SI+ KM RK +YD A+RV+ VGD C
Sbjct: 248 ITGFQI--HGRPKHLWSIYQKMTRKGKKFTDIYDLIAIRVLTESVGD------------C 293
Query: 332 YSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEH 391
YS L VH +W P+ G F DYI PKP+GYQSLHT V G D +E+QIRT +MH AE+
Sbjct: 294 YSTLGAVHTVWHPLPGRFKDYIAMPKPNGYQSLHTTVIGFDARPIEIQIRTFEMHSQAEY 353
Query: 392 GLAAHWLYKETGNKLQSISSMDESDIEA 419
G+AAHWLYK++GN +S DE+D+++
Sbjct: 354 GIAAHWLYKKSGNSSGRMSR-DEADVDS 380
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 90/147 (61%), Gaps = 12/147 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D + A +LHD V+D +L + E FG VA+LV GV++L+ ++ ++
Sbjct: 83 DPICAALLHDTVEDTSATLDDLTERFGATVAELVDGVTKLT------------SIEVSSM 130
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++A +LR M L M D RVV+IKLADRLHNMRT+ ALPP + A+ET+ ++ LA
Sbjct: 131 DEKQALNLRKMFLAMSKDIRVVIIKLADRLHNMRTLAALPPDRRVFKARETMDVYAPLAD 190
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ ++K ELEDL F L P + ++
Sbjct: 191 RLGISSIKWELEDLAFFYLNPDEYERI 217
>gi|425737468|ref|ZP_18855741.1| GTP pyrophosphokinase [Staphylococcus massiliensis S46]
gi|425482816|gb|EKU49972.1| GTP pyrophosphokinase [Staphylococcus massiliensis S46]
Length = 729
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 80/120 (66%), Gaps = 9/120 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K +YSI+ KM ++ +++D A+RV+V +I+ CY++L +VH L
Sbjct: 238 ISGRPKHIYSIYRKMMKQKKQFEQIFDLLAVRVIVN---------SIKDCYAVLGLVHTL 288
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTFEMHEIAEHGVAAHWAYKE 348
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++ F +E+A++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTSYTFDDVKGIFNEEIARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQVRISKETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQP-QIFR 156
LG+ +K ELED+ + Q FR
Sbjct: 178 LGINTIKWELEDIALRYIDNMQYFR 202
>gi|427717556|ref|YP_007065550.1| (p)ppGpp synthetase I SpoT/RelA [Calothrix sp. PCC 7507]
gi|427349992|gb|AFY32716.1| (p)ppGpp synthetase I, SpoT/RelA [Calothrix sp. PCC 7507]
Length = 756
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 89/141 (63%), Gaps = 12/141 (8%)
Query: 277 GME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 335
G+E + +S R K LYSI+ KM+R+ H++YD ALR++V + CY L
Sbjct: 249 GIECLDVSGRPKHLYSIYQKMQRQQKEFHEIYDLAALRIIVRTN---------EECYRAL 299
Query: 336 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 395
+VH + PI G F DYI PKP+ YQSLHT V G G LEVQIRTQ+MH AE+G+AA
Sbjct: 300 AVVHDAFRPIPGRFKDYIGLPKPNRYQSLHTGVIGLTGRPLEVQIRTQEMHHIAEYGIAA 359
Query: 396 HWLYKETGNKLQSISSMDESD 416
HW YKETG ++S++ SD
Sbjct: 360 HWKYKETGGS--NVSNLTTSD 378
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 95/156 (60%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D ++ I E FG EV +LV GV++LS +IN T
Sbjct: 87 IAAGFLHDVVEDTDVTIEQIGELFGPEVRQLVEGVTKLS----------KINFKSKT--E 134
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M D RV+++KLADRLHNMRT+ +P K R +AQET I+ LA+RL
Sbjct: 135 SQAENFRRMFLSMAQDIRVIVVKLADRLHNMRTLQVMPDDKRRRIAQETRDIFAPLANRL 194
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G+W K ELEDL F L+P+ FR+++ +A + R
Sbjct: 195 GIWHFKWELEDLSFKYLEPESFREIQQHVAEKRTSR 230
>gi|228475223|ref|ZP_04059949.1| GTP pyrophosphokinase [Staphylococcus hominis SK119]
gi|314936253|ref|ZP_07843600.1| GTP diphosphokinase [Staphylococcus hominis subsp. hominis C80]
gi|418618568|ref|ZP_13181433.1| GTP diphosphokinase [Staphylococcus hominis VCU122]
gi|228270834|gb|EEK12236.1| GTP pyrophosphokinase [Staphylococcus hominis SK119]
gi|313654872|gb|EFS18617.1| GTP diphosphokinase [Staphylococcus hominis subsp. hominis C80]
gi|374827328|gb|EHR91191.1| GTP diphosphokinase [Staphylococcus hominis VCU122]
Length = 729
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 90/151 (59%), Gaps = 19/151 (12%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K +YSI+ KM ++ +++D A+RV+V +I CY++L +VH L
Sbjct: 238 ISGRPKHIYSIYRKMVKQKKQFDQIFDLLAIRVIVN---------SINDCYAILGLVHTL 288
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTFEMHEIAEHGVAAHWAYKE 348
Query: 402 TG----------NKLQSISSMDESDIEASSS 422
NKL + + E+D +S +
Sbjct: 349 GKTINSKTQDFQNKLNWLKELAETDHTSSDA 379
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 87/145 (60%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++ F +E+A++V GV++L + ++R +
Sbjct: 70 TIVAGFLHDVIEDTPYTFEDVKNMFNEEIARIVDGVTKLKKV-----KYR-------SKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+ K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMAREKQIRISKETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQP-QIFR 156
LG+ +K ELED+ + Q FR
Sbjct: 178 LGINTIKWELEDIALRYIDSVQYFR 202
>gi|253574925|ref|ZP_04852265.1| RelA/SpoT family protein [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251845971|gb|EES73979.1| RelA/SpoT family protein [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 725
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ LS R K +YS++ KM K+ +++YD A+R++V + I+ CY+ L
Sbjct: 227 GIQADLSGRPKHIYSVYKKMTMKNKQFNEIYDLLAIRIIVDN---------IKDCYATLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H LW P+ G F DYI PK + YQSLHT V GP+G EVQIRT +MH AE+G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKANMYQSLHTTVVGPNGEPTEVQIRTWEMHRTAEYGIAAH 337
Query: 397 WLYKE 401
W YKE
Sbjct: 338 WAYKE 342
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 89/156 (57%), Gaps = 19/156 (12%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+V+A +LHDVV+D SL I+E FG + A LV G+++L I + + + N N
Sbjct: 64 SVIAALLHDVVEDTTVSLKEIQEHFGSDCALLVDGLTKLERI-KFQSKEEQQNEN----- 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
R M + M D RV++IKLADRLHNMRT+ R +A ETL I+C +A+R
Sbjct: 118 ------YRKMFIAMAQDIRVIVIKLADRLHNMRTLKYQSEESQRRIAYETLEIFCPIANR 171
Query: 133 LGLWALKAELEDLCFAVLQPQ-------IFRKMRAD 161
LG+ A+K E+ED+ L PQ + RK RA+
Sbjct: 172 LGISAIKWEMEDIALRYLNPQQYYRIANLMRKKRAE 207
>gi|312143973|ref|YP_003995419.1| (p)ppGpp synthetase I SpoT/RelA [Halanaerobium hydrogeniformans]
gi|311904624|gb|ADQ15065.1| (p)ppGpp synthetase I, SpoT/RelA [Halanaerobium hydrogeniformans]
Length = 715
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 90/143 (62%), Gaps = 11/143 (7%)
Query: 259 ACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 318
+ +EA+EK L T +E + R K L+SI++KM+RK+V ++YD A+RV+V +
Sbjct: 211 SIQEAIEK--LKETLEKHDIESEIYGRPKHLFSIYNKMKRKEVEFDEIYDLTAVRVLVEN 268
Query: 319 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 378
++ CY +L I+H +W P+ G F DYI PK + YQSLHT V P G LEV
Sbjct: 269 ---------VKECYEVLGIIHEIWKPMPGRFKDYIAMPKSNMYQSLHTTVIAPSGDPLEV 319
Query: 379 QIRTQKMHEYAEHGLAAHWLYKE 401
QIRT MH+ AE+G+AAHW YKE
Sbjct: 320 QIRTYDMHKTAEYGIAAHWRYKE 342
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 89/143 (62%), Gaps = 12/143 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
++VA ++HDVV+D + I +EFGDEVA +V GV++L+ + T
Sbjct: 64 SIVASMMHDVVEDTEITSEDIRKEFGDEVAHIVEGVTKLT------------RMQFKTKE 111
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A LR M + M +D RVVLIKLADRLHNMRT+ L K + ++ETL I+ LA R
Sbjct: 112 DQQAESLRKMFVAMAEDIRVVLIKLADRLHNMRTLNYLKKEKRKEKSRETLEIYAPLAHR 171
Query: 133 LGLWALKAELEDLCFAVLQPQIF 155
LG+ LK ELEDLCF L+P ++
Sbjct: 172 LGMSKLKWELEDLCFRYLKPDMY 194
>gi|359687928|ref|ZP_09257929.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
licerasiae serovar Varillal str. MMD0835]
gi|418750353|ref|ZP_13306639.1| putative GTP diphosphokinase [Leptospira licerasiae str. MMD4847]
gi|418758451|ref|ZP_13314633.1| GTP diphosphokinase [Leptospira licerasiae serovar Varillal str.
VAR 010]
gi|384114353|gb|EIE00616.1| GTP diphosphokinase [Leptospira licerasiae serovar Varillal str.
VAR 010]
gi|404272956|gb|EJZ40276.1| putative GTP diphosphokinase [Leptospira licerasiae str. MMD4847]
Length = 677
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 88/143 (61%), Gaps = 11/143 (7%)
Query: 261 EEALEKELLISTSYIPGMEVT--LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 318
E+ +EK LI + +++ + R K +SI+ KM+ K+ +++D RA+R+V +
Sbjct: 216 EDYIEKLQLILKQRLAEIQINANVEGRAKHFFSIYRKMKTKEKTFDEIFDLRAIRIVTDE 275
Query: 319 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 378
I+ CY +L IVH LW P+ G F DYI PK + YQSLHT V GPDG LEV
Sbjct: 276 ---------IKDCYGVLGIVHTLWSPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEV 326
Query: 379 QIRTQKMHEYAEHGLAAHWLYKE 401
QIRT +M+ AE G+AAHW+YKE
Sbjct: 327 QIRTAEMNAIAEFGIAAHWVYKE 349
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 96/157 (61%), Gaps = 12/157 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AGILHDV++D + + +FG E+ +LV GV+++S I +
Sbjct: 72 ISAGILHDVIEDTKYTKEDMVRDFGTEITQLVEGVTKISQIKSQSKET------------ 119
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
E A ++R +++ + D RV+LIKLAD+ HNMRT+ PP K R +A ETL ++ +A RL
Sbjct: 120 EAAENIRKIIIATIQDIRVILIKLADKTHNMRTLSFQPPEKQRRIANETLSLYAPIAGRL 179
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 170
G++++K+ELEDL F V+ P+ ++ ++ +++ S R
Sbjct: 180 GIYSVKSELEDLAFQVIFPEEYQDIKKRISAKKSERE 216
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 698
V V P GEI++L G+T D A + VGL K +NG+++ TEL+ GD VEV V
Sbjct: 393 VFVFTPKGEIIQLPKGATVLDFAFRIHTDVGLHCKGAKINGRMIPLRTELRSGDQVEVVV 452
>gi|218666350|ref|YP_002425057.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|218518563|gb|ACK79149.1| guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 734
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 97/183 (53%), Gaps = 25/183 (13%)
Query: 226 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 285
KR L++ K++ +K V + E ALE LL G +S R
Sbjct: 203 KRWHTLNEAVKAARGNRKEAVQK-----------IEHALEDRLLQE-----GFAAQVSGR 246
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
K +YSI+ KM++K + ++D A R++V D + CY +L +VH L+ PI
Sbjct: 247 EKHVYSIYRKMQKKGMPFGDIHDLHAFRIIVAD---------VDTCYRVLGLVHSLYRPI 297
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
G F DYI PK +GYQSLHT + GP G +EVQIRT+ MH AE G+AAHWLYK N
Sbjct: 298 PGRFKDYIAIPKSNGYQSLHTVLLGPFGHPVEVQIRTEDMHRVAEAGVAAHWLYKTGSNN 357
Query: 406 LQS 408
+
Sbjct: 358 AHA 360
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 86/141 (60%), Gaps = 12/141 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ A +LHDV++D S +I E FG EVA++V GVS+L V T
Sbjct: 75 TIQAALLHDVIEDCNISKENITERFGPEVAEMVDGVSKLG------------QVRFETRE 122
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A + R M L M D RVVLIKLADRLHNMRT+ + P K R +++ETL I+ +A R
Sbjct: 123 EAQAENFRKMFLAMSRDIRVVLIKLADRLHNMRTMGVMTPEKRRRISRETLDIYAPIAQR 182
Query: 133 LGLWALKAELEDLCFAVLQPQ 153
LG+ A++ ELE+L F+ L P+
Sbjct: 183 LGIHAIRIELEELAFSHLYPK 203
>gi|374300791|ref|YP_005052430.1| (p)ppGpp synthetase I SpoT/RelA [Desulfovibrio africanus str.
Walvis Bay]
gi|332553727|gb|EGJ50771.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfovibrio africanus str.
Walvis Bay]
Length = 716
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 79/119 (66%), Gaps = 9/119 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K LYSI +KM ++ + + +VYD A RV+V I+ CY++L VH +W P
Sbjct: 236 RTKHLYSIHNKMLQQSLTLDQVYDLMAFRVIVS---------TIRDCYAVLGEVHSIWKP 286
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 403
+ G F DYI PKP+ YQSLHT V GPDG +E+QIRT++MH AE+G+AAHW YKE G
Sbjct: 287 VPGRFKDYISMPKPNMYQSLHTTVIGPDGERIEIQIRTEEMHRLAEYGVAAHWQYKEGG 345
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 90/146 (61%), Gaps = 12/146 (8%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+V+ +LHD V+D ++ IE +FG EVA +V GV+++S + T
Sbjct: 66 IVSALLHDTVEDTKATVDEIESKFGKEVAHIVDGVTKIS------------KMTFETKAQ 113
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A ++R M++ M +D RV++IKLADRLHNMRT+ K + +AQETL I+ LA+RL
Sbjct: 114 AQAENIRKMIVAMAEDIRVIMIKLADRLHNMRTLDFQKSEKQKRIAQETLDIYAPLANRL 173
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMR 159
GL +K ELEDLCF +P + +++
Sbjct: 174 GLHFIKTELEDLCFMYTRPDAYGQLK 199
>gi|313895497|ref|ZP_07829053.1| GTP diphosphokinase [Selenomonas sp. oral taxon 137 str. F0430]
gi|320528880|ref|ZP_08029972.1| GTP diphosphokinase [Selenomonas artemidis F0399]
gi|402302377|ref|ZP_10821491.1| GTP diphosphokinase [Selenomonas sp. FOBRC9]
gi|312975623|gb|EFR41082.1| GTP diphosphokinase [Selenomonas sp. oral taxon 137 str. F0430]
gi|320138510|gb|EFW30400.1| GTP diphosphokinase [Selenomonas artemidis F0399]
gi|400380596|gb|EJP33410.1| GTP diphosphokinase [Selenomonas sp. FOBRC9]
Length = 742
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 92/155 (59%), Gaps = 12/155 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K YSI+ KM+R + + ++YD A+RV+V +++ CY +L
Sbjct: 235 GIEAEIKGRAKHFYSIYRKMKRDNKSVSEIYDLSAVRVLVS---------SVKDCYGVLG 285
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H +W PI G F DYI PK +GYQSLHT V G LE+QIRT MH +E G+AAH
Sbjct: 286 VIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-TQGDPLEIQIRTHAMHRVSEFGVAAH 344
Query: 397 WLYKETGNKLQSISSMDE--SDIEASSSLSKDTDD 429
W YKE+G + + + D+ S + SL K+ DD
Sbjct: 345 WKYKESGKSIGAGGAADQKMSWLRQMVSLQKEYDD 379
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 85/144 (59%), Gaps = 12/144 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +LHDVV+D ++ +EE FG +A L+ GV++L I + + ++
Sbjct: 71 ETICAALLHDVVEDTHATIEEMEELFGKNIAVLIDGVTKLGRIQYMSKEDVQLE------ 124
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ R M L M D RV++IKLADRLHNMRT+ + K + +A ETL ++ LA+
Sbjct: 125 ------NYRKMFLAMAKDIRVIMIKLADRLHNMRTLKYMREDKRQRIAHETLEVYAPLAN 178
Query: 132 RLGLWALKAELEDLCFAVLQPQIF 155
RLG+ +K ELEDLC L+P +
Sbjct: 179 RLGISNIKIELEDLCLRYLEPDAY 202
>gi|319942330|ref|ZP_08016645.1| (P)ppGpp synthetase I [Sutterella wadsworthensis 3_1_45B]
gi|319804203|gb|EFW01103.1| (P)ppGpp synthetase I [Sutterella wadsworthensis 3_1_45B]
Length = 745
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM+RK + +++D RA+R++V ++ CY L
Sbjct: 245 GIQAEVSGRPKHIYSIWKKMQRKHLRFDQLFDVRAVRIIV---------ETVEQCYEALS 295
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IV + + E+DDYI NPKP+GYQSLHT + G +E+QIRT+ MHE+AE G+AAH
Sbjct: 296 IVQEHFTVLSKEYDDYIANPKPNGYQSLHTVITDQLGRPIEIQIRTRAMHEFAELGVAAH 355
Query: 397 WLYKETGN 404
W YKE GN
Sbjct: 356 WRYKEAGN 363
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 68/130 (52%), Gaps = 5/130 (3%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
IE+ FG+ VA LV L +N L +R R N EA LR M L M D RV
Sbjct: 95 IEKSFGENVAGLV---RELGKMNDLSKRARSENKESSAAVQPEA--LRRMFLAMSQDLRV 149
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL+KLA RL +R + A +ETL ++ LA+RLG+W +K ELEDL P
Sbjct: 150 VLLKLASRLQTLRWFVSSQAPGAVEFGEETLAVYAPLANRLGIWQIKWELEDLSLRFTHP 209
Query: 153 QIFRKMRADL 162
+ ++ A+L
Sbjct: 210 AEYHQIAAEL 219
>gi|218885891|ref|YP_002435212.1| (p)ppGpp synthetase I SpoT/RelA [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756845|gb|ACL07744.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 722
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 100/162 (61%), Gaps = 17/162 (10%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R+K YSI+ KM ++D+ + ++D A RV+VGD ++ CY++L ++H W P
Sbjct: 236 RIKHKYSIYKKMVQQDLTLDDMHDIIAFRVIVGD---------LRDCYAVLGLMHAQWKP 286
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
+ G F DYI PK +GY+SLHT V GP+G +E+QIRT++MH AEHG+A+HWLYKE
Sbjct: 287 VHGRFKDYISMPKANGYRSLHTTVIGPEGERMEIQIRTEEMHRLAEHGVASHWLYKEG-- 344
Query: 405 KLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 446
S ++ D+E + L + D ++TD + SL++
Sbjct: 345 -----SRVNPRDLEQFTWLH-EILDRQKMETDSKEFMQSLRL 380
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 90/148 (60%), Gaps = 18/148 (12%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG+LHD V+D S+ I+ FG+EVA +V GV+++S Q T
Sbjct: 66 IAAGLLHDTVEDTTVSIEDIDTLFGEEVADVVDGVTKIS---------------QMTFES 110
Query: 74 EE---ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+E A ++R M+L M D RV+++KLADRLHNMRT+ K + +AQET+ I+ LA
Sbjct: 111 KEEAQAENIRKMILAMAHDIRVLIVKLADRLHNMRTLGFQKSHKQKLIAQETMDIYAPLA 170
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLGL +K ELEDL F L+P ++ ++
Sbjct: 171 NRLGLHRIKLELEDLSFRYLKPDVYAQI 198
>gi|50122490|ref|YP_051657.1| GDP/GTP pyrophosphokinase [Pectobacterium atrosepticum SCRI1043]
gi|49613016|emb|CAG76467.1| GTP pyrophosphokinase [Pectobacterium atrosepticum SCRI1043]
Length = 745
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY L
Sbjct: 244 GVQAEIYGRPKHIYSIWRKMQKKALSFDELFDVRAVRIVV---------ERLQDCYGALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHMPDEFDDYVANPKPNGYQSIHTVVLGPSGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 6/147 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ A +L + D ++E FG + LV GV + I QL +
Sbjct: 74 DSMRAALLFPLADANVVDEATLEAAFGKNIVDLVHGVRDMDAIRQLK------ATQNDSD 127
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E+ +++R MLL MV+D R V+IKLA+R+ ++R + P + A+E I+ LA+
Sbjct: 128 ASEQVDNIRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEEERVLAAKECTNIYAPLAN 187
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ LK ELED CF L P ++K+
Sbjct: 188 RLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|365157987|ref|ZP_09354230.1| GTP pyrophosphokinase [Bacillus smithii 7_3_47FAA]
gi|363622166|gb|EHL73337.1| GTP pyrophosphokinase [Bacillus smithii 7_3_47FAA]
Length = 730
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 86/138 (62%), Gaps = 10/138 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E +S R K +YSI+ KM K+ +++YD A+R++V +I+ CY++L
Sbjct: 233 SIEAEISGRPKHIYSIYRKMVIKNKQFNEIYDLLAVRILVN---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT MH AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFDMHRIAEYGVAAH 343
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE G L SS ++
Sbjct: 344 WAYKE-GKTLDENSSFEK 360
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 85/148 (57%), Gaps = 16/148 (10%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV AG LHDVV+D +L ++ EF +E+A LV GV++L I
Sbjct: 70 TVAAGFLHDVVEDTEMTLEDLKREFNEEIAMLVDGVTKLGKIK--------------YKS 115
Query: 73 HEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
HEE A + R M L M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA
Sbjct: 116 HEEQQAENHRKMFLAMAQDIRVILIKLADRLHNMRTLKHLPAEKQRRIANETLEIFAPLA 175
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELED L PQ + ++
Sbjct: 176 HRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|37524902|ref|NP_928246.1| GDP/GTP pyrophosphokinase [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784328|emb|CAE13205.1| GTP pyrophosphokinase [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 743
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 GVTTEIYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTLEIQIRTRQMHEDAELGIAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 6/147 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ A +L ++D ++ E FG + LV GV + I QL H ++
Sbjct: 74 DSMRAALLFPLMDAKLLGDETVTEAFGSAITNLVKGVMEMDAIRQLKATH------HDSI 127
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MV+D R V+IKLA+R+ ++R + + A+E I+ LA+
Sbjct: 128 CSVQVDNVRRMLLAMVEDFRCVIIKLAERIAHLREVKEATEDERVLAAKECSNIYAPLAN 187
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ LK ELED CF L P ++K+
Sbjct: 188 RLGIGQLKWELEDYCFRYLHPDEYKKI 214
>gi|343514887|ref|ZP_08751952.1| GTP pyrophosphokinase [Vibrio sp. N418]
gi|342799253|gb|EGU34828.1| GTP pyrophosphokinase [Vibrio sp. N418]
Length = 740
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 85/125 (68%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLEFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT+ MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPSEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKDMHEDSELGVAAH 353
Query: 397 WLYKE 401
W YKE
Sbjct: 354 WKYKE 358
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 8/152 (5%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V +EEE+ E+ KL+ GV ++ + QL NV +G+
Sbjct: 74 TLVAAQLFPLVSSGALQREKLEEEYNKEIIKLIDGVEEMAALGQL-------NVTLEGSA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA AQE I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAQECTNIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ LK E+ED F QP+ ++++ L+
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPETYKQIAKQLS 218
>gi|332289404|ref|YP_004420256.1| GDP/GTP pyrophosphokinase [Gallibacterium anatis UMN179]
gi|330432300|gb|AEC17359.1| GDP/GTP pyrophosphokinase [Gallibacterium anatis UMN179]
Length = 741
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Query: 279 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 338
EV + R K +YSI+ KM++K++ +YD RA+R++V +Q CY+ L IV
Sbjct: 244 EVEVYGRPKHIYSIWRKMQKKNLAFGDLYDVRAVRIIV---------QKLQDCYAALGIV 294
Query: 339 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 398
H + + EFDDYI NPKP+GYQS+HT V G G +EVQIRTQKMH+ AE G+AAHW
Sbjct: 295 HTHFKHLPKEFDDYIANPKPNGYQSIHTVVLGKGGKPIEVQIRTQKMHDDAELGVAAHWK 354
Query: 399 YKE 401
YKE
Sbjct: 355 YKE 357
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 9/152 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
++++A + +++ SL ++E FG + KLV GV + I QL N N+G+
Sbjct: 73 NSLLAALFFPFIENEILSLDDLQEHFGATIKKLVHGVFEMDNIRQL-------NTNRGS- 124
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVA-QETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ +RT + + + +A +E I+ LA
Sbjct: 125 DSVQIDNIRRMLLAMVEDFRCVVIKLAERITFLRTADSRINEEDKVLAAKECANIYAPLA 184
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELED CF L P +R + L
Sbjct: 185 NRLGIGQLKWELEDYCFRYLHPDQYRHIANQL 216
>gi|427737096|ref|YP_007056640.1| RelA/SpoT family (p)ppGpp synthetase [Rivularia sp. PCC 7116]
gi|427372137|gb|AFY56093.1| (p)ppGpp synthetase, RelA/SpoT family [Rivularia sp. PCC 7116]
Length = 805
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 97/163 (59%), Gaps = 17/163 (10%)
Query: 249 DAGIALTSLVACEEALEKELLISTSYI-------PGME-VTLSSRLKSLYSIFSKMRRKD 300
D+ + LVA + A +E L + + G+E V LS R K LYSI+ KM+R++
Sbjct: 262 DSYRQIQQLVADKRAAREERLTNVTETLRSRLKKAGIECVDLSGRPKHLYSIYQKMQRQN 321
Query: 301 VGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSG 360
H+++D ALR++V + CY L +VH + PI G F DYI PKP+
Sbjct: 322 KEFHEIFDLAALRIIVKTN---------EECYRALALVHDSFRPIPGRFKDYIGLPKPNR 372
Query: 361 YQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 403
YQSLHT V GP G +EVQIRT +MH AE+G+AAHW+YKE+G
Sbjct: 373 YQSLHTGVIGPWGRPMEVQIRTLEMHRIAEYGIAAHWIYKESG 415
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 100/171 (58%), Gaps = 17/171 (9%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D ++ IEE FG+EV +LV GV++LS +IN T
Sbjct: 135 IAAGFLHDVVEDTEITIEEIEERFGEEVRRLVEGVTKLS----------KINFKSKT--E 182
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M D RV+++KLADRLHNMRT+ A+P K RA A ET I+ LA+RL
Sbjct: 183 SQAENFRRMFLAMAQDIRVIVVKLADRLHNMRTLEAMPEHKRRAKALETREIFAPLANRL 242
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 184
G+W +K ELEDL F L+ +R+++ +A R R+T + +
Sbjct: 243 GIWHVKWELEDLAFKYLETDSYRQIQQLVAD-----KRAAREERLTNVTET 288
>gi|257792451|ref|YP_003183057.1| (p)ppGpp synthetase I SpoT/RelA [Eggerthella lenta DSM 2243]
gi|317490319|ref|ZP_07948805.1| RelA/SpoT family protein [Eggerthella sp. 1_3_56FAA]
gi|325833401|ref|ZP_08165850.1| GTP diphosphokinase [Eggerthella sp. HGA1]
gi|257476348|gb|ACV56668.1| (p)ppGpp synthetase I, SpoT/RelA [Eggerthella lenta DSM 2243]
gi|316910609|gb|EFV32232.1| RelA/SpoT family protein [Eggerthella sp. 1_3_56FAA]
gi|325485325|gb|EGC87794.1| GTP diphosphokinase [Eggerthella sp. HGA1]
Length = 802
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 80/129 (62%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ + R K LYSI+ KM +K G ++YD A+RV+V +++ CYS L
Sbjct: 280 NIQAQIMGRPKHLYSIYQKMTKKGKGFSEIYDLIAVRVIV---------KSVKDCYSALG 330
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT+ MH +E+G+AAH
Sbjct: 331 AVHTLWHPMPGRFKDYIAMPKFNMYQSLHTTVIGPAGRPLEVQIRTEDMHRQSEYGVAAH 390
Query: 397 WLYKETGNK 405
W YKE G K
Sbjct: 391 WRYKEKGGK 399
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 101/172 (58%), Gaps = 14/172 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V+T+ A +LHD V+D + +E EF +VA+LV GV++++ RI V +
Sbjct: 115 VETLCAALLHDTVEDTSVTRDQVEAEFNPQVAQLVEGVTKIT----------RIEVE--S 162
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
L E+A +R M + M D RV++IKLADRLHNMRT+ AL + A+ETL I+ +A
Sbjct: 163 LTDEQAATIRKMFVAMSKDIRVIVIKLADRLHNMRTLGALREDRRIFKARETLEIYAPIA 222
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV 182
RLG+ +K ELEDL F L+P F+++ + S R GY +I +I+
Sbjct: 223 HRLGINNIKWELEDLSFYYLEPNKFKQISRMVTESRSERE--GYLDQIISIL 272
>gi|212555686|gb|ACJ28140.1| GTP pyrophosphokinase [Shewanella piezotolerans WP3]
Length = 735
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 78/117 (66%), Gaps = 9/117 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWKKMNGKQLKFDELFDVRAVRIVT---------DRLQDCYGALGVVHTLWHH 301
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTIVVGPEGKTVEIQIRTEQMHEDAELGVAAHWKYKE 358
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 6/152 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A IL V D S I+E FG ++ LV+ V ++ I L +++ NQ
Sbjct: 72 IETLQAAILFVVFDADLISEEEIQERFGAKLEILVSSVQTMNAIGAL-----KVD-NQTR 125
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G + +++R MLL MV+D R V+IKLA+R+ +R I +A+E ++ LA
Sbjct: 126 NGEPQIDNIRKMLLAMVEDVRAVVIKLAERICLLREIKNADEEVKVLIAREIADVYAPLA 185
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ LK ELED+ F L PQ ++ + L
Sbjct: 186 NRLGIGQLKWELEDISFRYLHPQTYKDIAKQL 217
>gi|261822785|ref|YP_003260891.1| GDP/GTP pyrophosphokinase [Pectobacterium wasabiae WPP163]
gi|261606798|gb|ACX89284.1| (p)ppGpp synthetase I, SpoT/RelA [Pectobacterium wasabiae WPP163]
gi|385873228|gb|AFI91748.1| (P)ppGpp synthetase I/GTP pyrophosphokinase [Pectobacterium sp.
SCC3193]
Length = 745
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY L
Sbjct: 244 GVQAEIYGRPKHIYSIWRKMQKKALSFDELFDVRAVRIVV---------ERLQDCYGALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ A +L + D ++E FG + LV GV + I QL Q
Sbjct: 74 DSMRAALLFPLADANVVDEPTLEAAFGKNIVDLVHGVRDMDAIRQL-------KATQNDS 126
Query: 72 GH-EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G E+ +++R MLL MV+D R V+IKLA+R+ ++R + P + A+E I+ LA
Sbjct: 127 GSSEQVDNIRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEEERVLAAKECTNIYAPLA 186
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+ LK ELED CF L P ++K+
Sbjct: 187 NRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|253689751|ref|YP_003018941.1| (p)ppGpp synthetase I SpoT/RelA [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756329|gb|ACT14405.1| (p)ppGpp synthetase I, SpoT/RelA [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 744
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY L
Sbjct: 244 GVQAEIYGRPKHIYSIWRKMQKKALSFDELFDVRAVRIVV---------ERLQDCYGALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ A +L + D ++E FG + LV GV + I QL Q
Sbjct: 74 DSMRAALLFPLADANVVDEATLEAAFGKNIVDLVHGVRDMDAIRQL-------KATQNDS 126
Query: 72 G-HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G E+ +++R MLL MV+D R V+IKLA+R+ ++R + P + A+E I+ LA
Sbjct: 127 GASEQVDNIRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEEERVLAAKECTNIYAPLA 186
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+ LK ELED CF L P ++K+
Sbjct: 187 NRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|227114810|ref|ZP_03828466.1| GDP/GTP pyrophosphokinase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 744
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY L
Sbjct: 244 GVQAEIYGRPKHIYSIWRKMQKKALSFDELFDVRAVRIVV---------ERLQDCYGALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ A +L + D ++E FG + LV GV + I QL Q
Sbjct: 74 DSMRAALLFPLADANVVDEATLEAAFGKNIVDLVHGVRDMDAIRQL-------KATQNDS 126
Query: 72 G-HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G E+ +++R MLL MV+D R V+IKLA+R+ ++R + P + A+E I+ LA
Sbjct: 127 GASEQVDNIRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEEERVLAAKECTNIYAPLA 186
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+ LK ELED CF L P ++K+
Sbjct: 187 NRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|302038556|ref|YP_003798878.1| GTP pyrophosphokinase [Candidatus Nitrospira defluvii]
gi|300606620|emb|CBK42953.1| GTP pyrophosphokinase [Candidatus Nitrospira defluvii]
Length = 727
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 97/178 (54%), Gaps = 17/178 (9%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K LY I+ KM ++ + +VYD ALR++ K CY+LL
Sbjct: 233 GLQGEVSGRPKHLYGIYQKMEKQSISFEEVYDLAALRIITDIKMN---------CYALLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H LW P+ G F DYI PK + YQSLHT V GP G +E QIRT++MH +E G+AAH
Sbjct: 284 VIHSLWRPLPGRFKDYIAIPKSNMYQSLHTTVVGPQGEHVEFQIRTEEMHRVSEQGIAAH 343
Query: 397 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPL-DTDLFQKYSSLKMGHPVIRV 453
W YKE G +DE D + S L + + + L D F L + H V+ V
Sbjct: 344 WKYKEHGR-------IDEKDGKVFSWLRQFVEWNQDLPDNRQFMDSVKLDLFHDVVYV 394
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 94/156 (60%), Gaps = 12/156 (7%)
Query: 8 KRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN 67
K V +VAG+LHD ++D + +E+ FG +V LV GV+++ I R +
Sbjct: 65 KTDVTAIVAGLLHDTLEDTLATPLELEQRFGKDVVHLVDGVTKIGKIT--FRNYEE---- 118
Query: 68 QGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWC 127
++A + R M+L M DD RVVLIKLADRLHNMRT+ L K + +AQETL I+
Sbjct: 119 ------KQAENFRKMVLSMADDIRVVLIKLADRLHNMRTLEYLSEGKRQQIAQETLEIYA 172
Query: 128 SLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
LA+RLG+ +K ELEDLC L+P ++ +R +A
Sbjct: 173 PLANRLGIGWIKNELEDLCLKHLKPDVYESLRVRVA 208
>gi|403059832|ref|YP_006648049.1| GTP pyrophosphokinase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402807158|gb|AFR04796.1| GTP pyrophosphokinase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 744
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY L
Sbjct: 244 GVQAEIYGRPKHIYSIWRKMQKKALSFDELFDVRAVRIVV---------ERLQDCYGALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ A +L + D ++E FG + LV GV + I QL Q
Sbjct: 74 DSMRAALLFPLADANVVDEATLEAAFGKNIVDLVHGVRDMDAIRQL-------KATQNDS 126
Query: 72 G-HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G E+ +++R MLL MV+D R V+IKLA+R+ ++R + P + A+E I+ LA
Sbjct: 127 GASEQVDNIRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEEERVLAAKECTNIYAPLA 186
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+ LK ELED CF L P ++K+
Sbjct: 187 NRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|379012030|ref|YP_005269842.1| GTP pyrophosphokinase RelA [Acetobacterium woodii DSM 1030]
gi|375302819|gb|AFA48953.1| GTP pyrophosphokinase RelA [Acetobacterium woodii DSM 1030]
Length = 723
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G + R K YSI+ KM+ ++ ++YD A+RV+V +++ CY +L
Sbjct: 234 GTHAEIYGRSKHFYSIYRKMKSQNRSFDEIYDLIAVRVIVD---------SLKDCYGVLG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH W PI G F DYI PKP+ YQS+HT V GP G E+QIRT++MHE AE+G+AAH
Sbjct: 285 IVHSQWTPIPGRFKDYIAMPKPNLYQSIHTTVMGPKGEPFEIQIRTREMHETAEYGIAAH 344
Query: 397 WLYKE 401
W YKE
Sbjct: 345 WKYKE 349
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 83/143 (58%), Gaps = 16/143 (11%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+VA ILHDV++D S I+EEF + +A LV GV+++ I G
Sbjct: 70 ETIVAAILHDVIEDTIYSYDYIKEEFNETIANLVEGVTKIGRI--------------GFQ 115
Query: 72 GHEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
EE A +LR M+L M D RV+LIKL DRLHNMRT+ + K A+ETL I+ L
Sbjct: 116 SKEESQAENLRKMILAMSKDIRVILIKLVDRLHNMRTLEYMRETKQIEKAKETLDIYAPL 175
Query: 130 ASRLGLWALKAELEDLCFAVLQP 152
A+RLG+ +K ELEDL L P
Sbjct: 176 ANRLGISTIKWELEDLALKYLDP 198
>gi|343508976|ref|ZP_08746273.1| GTP pyrophosphokinase [Vibrio scophthalmi LMG 19158]
gi|342806042|gb|EGU41283.1| GTP pyrophosphokinase [Vibrio scophthalmi LMG 19158]
Length = 740
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 85/125 (68%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLEFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT+ MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPSEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKDMHEDSELGVAAH 353
Query: 397 WLYKE 401
W YKE
Sbjct: 354 WKYKE 358
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 8/152 (5%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V +EEE+ E+ KL+ GV ++ + QL NV +G+
Sbjct: 74 TLVAAQLFPLVSSGALQREKLEEEYNKEIIKLIDGVEEMAALGQL-------NVTLEGSA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA AQE I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAQECTNIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ LK E+ED F QP+ ++++ L+
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPETYKQIAKQLS 218
>gi|325971908|ref|YP_004248099.1| (p)ppGpp synthetase I SpoT/RelA [Sphaerochaeta globus str. Buddy]
gi|324027146|gb|ADY13905.1| (p)ppGpp synthetase I, SpoT/RelA [Sphaerochaeta globus str. Buddy]
Length = 674
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 89/136 (65%), Gaps = 10/136 (7%)
Query: 279 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 338
++ ++SR K YSI+ KM+++ I +++D +R++ ++ CY++L +V
Sbjct: 231 DIIVTSRAKHTYSIYMKMKKRKKEIDEIFDILGVRILCN---------SVTECYTILGVV 281
Query: 339 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 398
HRLW PI+G F DYI PK + YQSLHT V DG LE+QIRT++MH AE+G+AAHW
Sbjct: 282 HRLWPPIEGRFKDYIAMPKANNYQSLHTTVMALDGKLLEIQIRTKEMHFTAEYGVAAHWS 341
Query: 399 YK-ETGNKLQSISSMD 413
YK E+G+ S S+MD
Sbjct: 342 YKAESGSDTGSWSTMD 357
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 92/171 (53%), Gaps = 15/171 (8%)
Query: 8 KRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN 67
K DT+ AG+LHD ++D + ++E FG VA +V G ++++ N+
Sbjct: 61 KMDADTICAGLLHDTLEDTATTYEELKEVFGQSVADMVEGETKIA------------NLK 108
Query: 68 QGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWC 127
EA +R M M D RV+ IKLAD+LHNMRT+ L P +AR +A +TL I+
Sbjct: 109 TMNKSLAEAETIRKMFFAMSKDIRVI-IKLADKLHNMRTLQHLNPERAREIAGDTLDIFA 167
Query: 128 SLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRI 178
LA RLG+ LK ELEDL +L+P F ++ L S S + Y RI
Sbjct: 168 PLADRLGISWLKDELEDLSLKILKPDTFNYIQEYLLSKKSEQK--AYLSRI 216
>gi|315645801|ref|ZP_07898922.1| (p)ppGpp synthetase I, SpoT/RelA [Paenibacillus vortex V453]
gi|315278562|gb|EFU41876.1| (p)ppGpp synthetase I, SpoT/RelA [Paenibacillus vortex V453]
Length = 725
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ LS R K +YS+F KM K+ +++YD A+R++V + I+ CY+ L
Sbjct: 227 GIQADLSGRPKHIYSVFKKMTVKNKQFNEIYDLLAIRIIVDN---------IKDCYATLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H LW P+ G F DYI PK + YQSLHT V GP+G EVQIRT +MH AE G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKTNMYQSLHTTVVGPNGEPTEVQIRTWEMHRTAEFGIAAH 337
Query: 397 WLYKE 401
W YKE
Sbjct: 338 WAYKE 342
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 86/150 (57%), Gaps = 14/150 (9%)
Query: 11 VDT--VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQ 68
VDT ++A +LHDVV+D SL I E FGD A LV G+++L I Q + + N N
Sbjct: 60 VDTLSIIAALLHDVVEDTTVSLEQIRERFGDTCAMLVDGLTKLERI-QFRSKEEQQNEN- 117
Query: 69 GTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 128
R M + M D RV++IKLADRLHNMRT+ R ++ ETL I+C
Sbjct: 118 ----------YRKMFIAMARDIRVIVIKLADRLHNMRTLKYQSEESQRRISYETLEIFCP 167
Query: 129 LASRLGLWALKAELEDLCFAVLQPQIFRKM 158
+A RLG+ A+K E+ED+ L PQ + ++
Sbjct: 168 IAHRLGISAIKWEMEDIALRYLNPQQYYRI 197
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 596 ASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 655
S +NK+ R +L + + + + +S K + D +V V P GE++ L
Sbjct: 349 GSFDNKMTFFREILELQHETKDASEFVESL---KMDFFSD------LVFVFTPKGEVIEL 399
Query: 656 RSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 696
SGS D A ++ E G + VNG++V + +LK GDIVE+
Sbjct: 400 PSGSVPLDFAYRIHTEVGNRTIGAKVNGRIVPLDYQLKTGDIVEI 444
>gi|307155133|ref|YP_003890517.1| (p)ppGpp synthetase I SpoT/RelA [Cyanothece sp. PCC 7822]
gi|306985361|gb|ADN17242.1| (p)ppGpp synthetase I, SpoT/RelA [Cyanothece sp. PCC 7822]
Length = 750
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 100/171 (58%), Gaps = 17/171 (9%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D +L IE+ FGDEV +LV GV++LS N + R
Sbjct: 86 IAAGFLHDVVEDTEVTLEDIEQRFGDEVRQLVEGVTKLSKFNFSSKTER----------- 134
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M D RV+++KLADRLHNMRT+ L K R++A ET I+ LA+RL
Sbjct: 135 -QAENFRRMFLAMAKDIRVIVVKLADRLHNMRTLEHLATEKQRSIALETREIFAPLANRL 193
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 184
G+ K ELEDLCF L+P+ +R+++A +A R+ RI I +
Sbjct: 194 GIGRFKWELEDLCFKYLEPEAYREIQALVAE-----KRIDRETRIEQITET 239
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 82/133 (61%), Gaps = 9/133 (6%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+ R K LY I+ KM+R+ H++YD ALR++V K+ CY L IVH +
Sbjct: 254 IQGRPKHLYGIYHKMQRQRKEFHEIYDIAALRIIVETKDE---------CYRALAIVHDV 304
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ PI G F DYI PK + YQSLHT V G G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 305 FKPIPGRFKDYIGLPKSNRYQSLHTTVVGFTGRPLEVQIRTLEMHHIAEYGIAAHWKYKE 364
Query: 402 TGNKLQSISSMDE 414
+G +++S DE
Sbjct: 365 SGGSNYNLTSEDE 377
>gi|421082397|ref|ZP_15543280.1| GDP/GTP pyrophosphokinase [Pectobacterium wasabiae CFBP 3304]
gi|401702634|gb|EJS92874.1| GDP/GTP pyrophosphokinase [Pectobacterium wasabiae CFBP 3304]
Length = 745
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY L
Sbjct: 244 GVQAEIYGRPKHIYSIWRKMQKKALSFDELFDVRAVRIVV---------ERLQDCYGALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
D++ A +L + D ++E FG + LV GV + I QL Q
Sbjct: 74 DSMRAALLFPLADANVVDEPTLEAAFGKNIVDLVHGVRDMDAIRQL-------KATQNDS 126
Query: 72 GH-EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
G E+ +++R MLL MV+D R V+IKLA+R+ ++R + P + A+E I+ LA
Sbjct: 127 GSSEQVDNIRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEEERVLAAKECTNIYAPLA 186
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+ LK ELED CF L P ++K+
Sbjct: 187 NRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|410084923|ref|ZP_11281644.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Morganella morganii
SC01]
gi|409768568|gb|EKN52628.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Morganella morganii
SC01]
Length = 744
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 GIQAEIYGRPKHIYSIWRKMQKKSLSFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPAGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 105/216 (48%), Gaps = 12/216 (5%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+D++ A +L + + I E FG + LV GV + I QL H N +
Sbjct: 73 LDSLRAALLFPLAEAEILGEEEISEAFGSAIWLLVKGVMDMDAIRQLKATH---NDETSS 129
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ + +++R MLL MV+D R V+IKLA+R+ ++R + + A+E I+ LA
Sbjct: 130 V---QVDNIRRMLLSMVEDFRCVVIKLAERIAHLREVKDAGEDERVLAAKECFNIYAPLA 186
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDER 190
+RLG+ LK ELED CF L P +++ +AS+ R R+ I V++ D +
Sbjct: 187 NRLGIGQLKWELEDYCFRYLHPDDYKR----IASLLHER-RLDREEYIDNFVTTLRNDMK 241
Query: 191 TASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+H+ S+ + + + + FD L D R
Sbjct: 242 EEGIQAEIYGRPKHIYSIWRKMQKKSLSFDELFDVR 277
>gi|387929855|ref|ZP_10132532.1| GTP pyrophosphokinase RelA/SpoT [Bacillus methanolicus PB1]
gi|387586673|gb|EIJ78997.1| GTP pyrophosphokinase RelA/SpoT [Bacillus methanolicus PB1]
Length = 731
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 88/137 (64%), Gaps = 10/137 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I
Sbjct: 234 IKAEISGRPKHIYSIYRKMALQNKQFNEIYDLLAVRIVVN---------SIKDCYAVLGI 284
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE+G+AAHW
Sbjct: 285 IHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHRIAEYGIAAHW 344
Query: 398 LYKETGNKLQSISSMDE 414
YKE G ++ SS ++
Sbjct: 345 AYKE-GKSVKENSSFED 360
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 85/146 (58%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV AG LHDVV+D +L + E F DEVA LV GV++L I + H
Sbjct: 70 TVAAGFLHDVVEDTDVTLEEMREAFNDEVAMLVDGVTKLGKIK--YKSHE---------- 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA R
Sbjct: 118 EQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPLEKQRRISNETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISKIKWELEDTALRYLNPQQYYRI 203
>gi|386714927|ref|YP_006181250.1| GTP pyrophosphokinase [Halobacillus halophilus DSM 2266]
gi|384074483|emb|CCG45976.1| GTP pyrophosphokinase [Halobacillus halophilus DSM 2266]
Length = 734
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ L+ R K LYSI+ KM ++ +++YD A+R+ V +I+ CY++L
Sbjct: 233 NIDADLNGRPKHLYSIYRKMVLQNKQFNEIYDLLAVRITVN---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNLYQSLHTTVIGPKGDPLEVQIRTHDMHEIAEYGIAAH 343
Query: 397 WLYKE 401
W YKE
Sbjct: 344 WAYKE 348
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 84/147 (57%), Gaps = 12/147 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ G LHDVV+D S+ IE+ F EV+ LV GV++L I +
Sbjct: 69 ETIAGGFLHDVVEDTEVSIEEIEKAFNTEVSMLVDGVTKLGKIKYKSKEA---------- 118
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA
Sbjct: 119 --QQAENHRKMFVAMAKDIRVILIKLADRLHNMRTLKHLPAEKQRRISNETLEIFAPLAH 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELED L PQ + ++
Sbjct: 177 RLGISTIKWELEDTALRYLNPQQYYRI 203
>gi|261405422|ref|YP_003241663.1| (p)ppGpp synthetase I SpoT/RelA [Paenibacillus sp. Y412MC10]
gi|329926741|ref|ZP_08281149.1| GTP diphosphokinase [Paenibacillus sp. HGF5]
gi|261281885|gb|ACX63856.1| (p)ppGpp synthetase I, SpoT/RelA [Paenibacillus sp. Y412MC10]
gi|328938941|gb|EGG35309.1| GTP diphosphokinase [Paenibacillus sp. HGF5]
Length = 725
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ LS R K +YS+F KM K+ +++YD A+R++V + I+ CY+ L
Sbjct: 227 GIQADLSGRPKHIYSVFKKMTVKNKQFNEIYDLLAIRIIVDN---------IKDCYATLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H LW P+ G F DYI PK + YQSLHT V GP+G EVQIRT +MH AE G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKTNMYQSLHTTVVGPNGEPTEVQIRTWEMHRTAEFGIAAH 337
Query: 397 WLYKE 401
W YKE
Sbjct: 338 WAYKE 342
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+++A +LHDVV+D SL I E FGD A LV G+++L I Q + + N N
Sbjct: 64 SIIAALLHDVVEDTTVSLEQIRERFGDTCAMLVDGLTKLERI-QFRSKEEQQNEN----- 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
R M + M D RV++IKLADRLHNMRT+ R ++ ETL I+C +A R
Sbjct: 118 ------YRKMFIAMARDIRVIVIKLADRLHNMRTLKYQSEESQRRISYETLEIFCPIAHR 171
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ A+K E+ED+ L PQ + ++
Sbjct: 172 LGISAIKWEMEDIALRYLNPQQYYRI 197
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 596 ASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 655
S +NK+ R +L + + + + +S K + D +V V P GE++ L
Sbjct: 349 GSFDNKMTFFREILELQHETKDASEFVESL---KMDFFSD------LVFVFTPKGEVIEL 399
Query: 656 RSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 696
SGS D A ++ E G + VNG++V + +LK GDIVE+
Sbjct: 400 PSGSVPLDFAYRIHTEVGNRTIGAKVNGRIVPLDHQLKTGDIVEI 444
>gi|37681005|ref|NP_935614.1| GTP pyrophosphokinase [Vibrio vulnificus YJ016]
gi|37199755|dbj|BAC95585.1| GTP pyrophosphokinase [Vibrio vulnificus YJ016]
Length = 741
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLEFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH + + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKQMHEDSELGVAAH 353
Query: 397 WLYKE 401
W YKE
Sbjct: 354 WKYKE 358
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 8/152 (5%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V + +EE + E+ KL+ GV ++ I QL N+ +G+
Sbjct: 74 TLVAAQLFPLVSSGAFAREPLEEHYSKEIIKLIDGVDEMAAIGQL-------NITLEGSA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA A+E I+ LA+
Sbjct: 127 ASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ LK E+ED F QP ++++ L+
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLS 218
>gi|421492492|ref|ZP_15939852.1| RELA [Morganella morganii subsp. morganii KT]
gi|455738312|ref|YP_007504578.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Morganella morganii
subsp. morganii KT]
gi|400193099|gb|EJO26235.1| RELA [Morganella morganii subsp. morganii KT]
gi|455419875|gb|AGG30205.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Morganella morganii
subsp. morganii KT]
Length = 744
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 GIQAEIYGRPKHIYSIWRKMQKKSLSFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPAGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 105/216 (48%), Gaps = 12/216 (5%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+D++ A +L + + I E FG + LV GV + I QL H N +
Sbjct: 73 LDSLRAALLFPLAEAEILGEEEISEAFGPAIWLLVKGVMDMDAIRQLKATH---NDETSS 129
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ + +++R MLL MV+D R V+IKLA+R+ ++R + + A+E I+ LA
Sbjct: 130 V---QVDNIRRMLLSMVEDFRCVVIKLAERIAHLREVKDAGEDERVLAAKECFNIYAPLA 186
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDER 190
+RLG+ LK ELED CF L P +++ +AS+ R R+ I V++ D +
Sbjct: 187 NRLGIGQLKWELEDYCFRYLHPDDYKR----IASLLHER-RLDREEYIDNFVTTLRNDMK 241
Query: 191 TASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+H+ S+ + + + + FD L D R
Sbjct: 242 EEGIQAEIYGRPKHIYSIWRKMQKKSLSFDELFDVR 277
>gi|146296035|ref|YP_001179806.1| (p)ppGpp synthetase I SpoT/RelA [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409611|gb|ABP66615.1| (p)ppGpp synthetase I, SpoT/RelA [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 722
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 102/176 (57%), Gaps = 20/176 (11%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLS---YINQLLRRHRRINVN 67
+ ++VAG+LHDVV+D S IE+EFG E+A LV GV++L + ++L
Sbjct: 64 IASIVAGLLHDVVEDTSASPQEIEQEFGGEIASLVDGVTKLGKLEFTSKL---------- 113
Query: 68 QGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWC 127
++A + R ML+ M D RV+LIKLADRLHNMRT+ LPP K R AQET+ I+
Sbjct: 114 -----EQQAENYRKMLIAMAKDIRVILIKLADRLHNMRTLKYLPPEKQRQKAQETIDIYA 168
Query: 128 SLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 183
LA RLG+ +K ELEDL L P+ + + +A R Y +RI ++S
Sbjct: 169 PLAHRLGISKIKWELEDLALRYLDPEGYYDLVEKIAKKRVEREE--YIQRIINLIS 222
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 82/135 (60%), Gaps = 14/135 (10%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+ R K YSI+ KM+++ + ++YD A+R++V +++ CY +L I+H L
Sbjct: 235 IDGRPKHFYSIYRKMKQQGKTLEEIYDLFAIRIIVN---------SVKDCYGVLGIIHTL 285
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 286 FKPMPGRFKDYIAMPKPNMYQSLHTTVIGPEGEPFEVQIRTFDMHRTAEYGIAAHWKYKE 345
Query: 402 TGNKLQSISSMDESD 416
I S DE +
Sbjct: 346 G-----RIKSTDEDE 355
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 599 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 658
+ K LR +L W+++L+ +S K N D V V P G+++ L G
Sbjct: 354 DEKFAWLRELLEWQKELKDAKEFMESL---KINLFSDEV------FVFTPKGDVISLPQG 404
Query: 659 STAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
ST D A ++G + VNG+LV + ELK+GDIVE+
Sbjct: 405 STPIDFAYAIHSEIGNKMAGAKVNGKLVPIDYELKNGDIVEI 446
>gi|343503699|ref|ZP_08741508.1| GTP pyrophosphokinase [Vibrio ichthyoenteri ATCC 700023]
gi|342814291|gb|EGU49238.1| GTP pyrophosphokinase [Vibrio ichthyoenteri ATCC 700023]
Length = 740
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 85/125 (68%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLEFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT+ MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPSEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKDMHEDSELGVAAH 353
Query: 397 WLYKE 401
W YKE
Sbjct: 354 WKYKE 358
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 8/152 (5%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA L +V +EEE+ E+ KL+ GV ++ + QL NV +G+
Sbjct: 74 TLVAAQLFPLVSSGALQRDKLEEEYNKEIIKLIDGVEEMAALGQL-------NVTLEGSA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P RA AQE I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVVIKLAERICNLIEVKKAPDEVRRAAAQECTNIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ LK E+ED F QP+ ++++ L+
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPETYKQIAKQLS 218
>gi|92113762|ref|YP_573690.1| (p)ppGpp synthetase I SpoT/RelA [Chromohalobacter salexigens DSM
3043]
gi|91796852|gb|ABE58991.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Chromohalobacter salexigens DSM 3043]
Length = 750
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 84/136 (61%), Gaps = 11/136 (8%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+ R K +YSI+ KM+RK + +VYD RA+R++V P + CY+ L IVH
Sbjct: 259 VDGRAKHIYSIWRKMQRKHIDFSQVYDVRAVRILV---------PEVADCYTALGIVHSR 309
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W + EFDDYI NPK +GYQSLHTAV GP+ LE+QIRT MHE AE G+ AHW YK
Sbjct: 310 WHHVPHEFDDYIANPKRNGYQSLHTAVIGPENKVLEIQIRTFSMHEEAELGVCAHWRYK- 368
Query: 402 TGNKLQSISSMDESDI 417
G+ + S S E I
Sbjct: 369 -GHDVDSKSRSYEEKI 383
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 86/156 (55%), Gaps = 6/156 (3%)
Query: 16 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 75
A +L+ VV + +L +IE+ FG EVA L+ GV ++ I+QL QG H +
Sbjct: 87 AAVLYRVVREGLITLEAIEKRFGAEVASLIDGVLHMAAISQLQ------APRQGLSQHNQ 140
Query: 76 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 135
+LR ML+ MVDD RV LIK+A+R +R + P K VA+E I+ LA RLG+
Sbjct: 141 QENLRKMLVAMVDDVRVALIKIAERTCALRMVRDAPREKRLRVAREVFDIYAPLAHRLGI 200
Query: 136 WALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
LK ELEDL F LQ ++ + LA R+R
Sbjct: 201 GQLKWELEDLSFRYLQEDDYKTIAKQLAEKRLDRDR 236
>gi|451819384|ref|YP_007455585.1| GTP pyrophosphokinase RelA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451785363|gb|AGF56331.1| GTP pyrophosphokinase RelA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 737
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K YSI+ KM K+ I +++D A+R++V +++ CY +L
Sbjct: 229 GIESDIDGRPKHFYSIYKKMVNKNKSIEQIFDLTAIRILVN---------SVKDCYGVLG 279
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH ++ PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 280 IVHTIYRPIPGRFKDYIAMPKPNMYQSLHTTVIGPQGKTFEIQIRTFEMHKTAEYGIAAH 339
Query: 397 WLYKE 401
W YKE
Sbjct: 340 WKYKE 344
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 95/152 (62%), Gaps = 9/152 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+VAG+LHDV++D S + F +E+ L+ GV++L+ + ++ + T
Sbjct: 62 NTIVAGLLHDVIEDTEFSYEETVKLFNEEIGNLIEGVTKLTRLGEMEYK---------TK 112
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++A+++R MLL M D RV++IKLADRLHNMRT+ +P K + A+ETL I+ LA
Sbjct: 113 EEQQADNVRKMLLAMAKDIRVIIIKLADRLHNMRTLKFMPEKKQKNKAKETLDIYAPLAH 172
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ +K ELEDLCF L + + ++ +A
Sbjct: 173 RLGMSKIKWELEDLCFRYLHEKEYYELVDSIA 204
>gi|339441909|ref|YP_004707914.1| guanosine polyphosphate pyrophosphohydrolase/synthetases
[Clostridium sp. SY8519]
gi|338901310|dbj|BAK46812.1| guanosine polyphosphate pyrophosphohydrolase/synthetases
[Clostridium sp. SY8519]
Length = 779
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 82/134 (61%), Gaps = 9/134 (6%)
Query: 271 STSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQC 330
ST +E T+ R K +SI+ KM +D + ++YD A+R++V D ++
Sbjct: 255 STIAAADIEATVYGRAKHFFSIYKKMVNQDKTLDQIYDLFAIRIIVKD---------VKD 305
Query: 331 CYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAE 390
CY+ L ++H + P+ G F DYI PKP+ YQSLHT + GP+G E+QIRT++MH E
Sbjct: 306 CYAALGVIHEHYTPVPGRFKDYIAMPKPNMYQSLHTTLMGPNGQPFEIQIRTEEMHRTCE 365
Query: 391 HGLAAHWLYKETGN 404
+G+AAHW YKE N
Sbjct: 366 YGIAAHWKYKEANN 379
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 95/152 (62%), Gaps = 11/152 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+VAG+LHDV +D +L + E+F DEVA LV GV++L NQL +I V
Sbjct: 96 ETIVAGLLHDVAEDTGMTLEELAEDFNDEVALLVDGVTKL---NQLSYDADKIEV----- 147
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A +LR M L M D RV++IKLADRLHNMRT+ + P K + A+ET+ I+ +A
Sbjct: 148 ---QAENLRKMFLAMAKDIRVIIIKLADRLHNMRTLQFMKPEKQKEKARETMEIYAPIAQ 204
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ ++K ELEDL L+P+ + + +A
Sbjct: 205 RLGISSIKVELEDLSLKYLEPEAYYDLVEKIA 236
>gi|114562227|ref|YP_749740.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella frigidimarina NCIMB
400]
gi|114333520|gb|ABI70902.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella frigidimarina NCIMB
400]
Length = 756
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 79/117 (67%), Gaps = 9/117 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM+ KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 272 RPKHIYSIWRKMKGKDLKFDELFDVRAVRIVT---------ERLQDCYGALGVVHDLWHH 322
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT+ MH+ +E G+AAHW YKE
Sbjct: 323 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTEAMHQDSELGVAAHWKYKE 379
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 110/219 (50%), Gaps = 18/219 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A +L + D + I E++G+ +A+LVA V ++ I L V+Q +
Sbjct: 93 IETLQAAVLFLLFDAGVLNEEQILEQYGENLARLVASVVTMNAIGAL-------KVSQNS 145
Query: 71 LGHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
E + +++R MLL MV+D R V+IKLA+R+ +R + +A+E I+ L
Sbjct: 146 RDAEPQIDNIRKMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADIYAPL 205
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDE 189
A+RLG+ LK ELED+ F L P +++ + L RV I V+ L +
Sbjct: 206 ANRLGIGQLKWELEDISFRYLHPTVYKDIAKQLDG-----KRVDREVFIDKFVTQ--LQQ 258
Query: 190 RTASDDESFTTFD--EHVLSM-KDLLEAVVPFDILSDRR 225
R SDD + +H+ S+ + + + FD L D R
Sbjct: 259 RLDSDDIRAKVYGRPKHIYSIWRKMKGKDLKFDELFDVR 297
>gi|449020118|dbj|BAM83520.1| ppGpp synthetase/hydrolase Rel [Cyanidioschyzon merolae strain 10D]
Length = 988
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 109/184 (59%), Gaps = 11/184 (5%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DT++AGIL ++V+ SL SI E+FG+ VA+L+ G +++S + ++ + +
Sbjct: 288 DTIIAGILTELVESGVASLASIAEQFGNAVARLIEGEAKVSRLPEMA---------ESPI 338
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E +LR M + M D R+++IKLA RLH MRT+ LP + R +A+ETL I+ LA
Sbjct: 339 ADENVENLRQMFIAMASDFRIIVIKLAARLHTMRTLQTLPAERQRRIARETLDIFAPLAH 398
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV--GYSRRITTIVSSPPLDE 189
RLG+W++K+ LE+L F L P+ +RK+R+ + R+ R+ +SS P+
Sbjct: 399 RLGIWSVKSHLENLAFLYLYPEEYRKIRSHIEGRMPSYKRILEESKARLEHALSSDPILR 458
Query: 190 RTAS 193
RT S
Sbjct: 459 RTVS 462
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 82/146 (56%), Gaps = 24/146 (16%)
Query: 280 VTLSSRLKSLYSIFSKMRR-KDVGIHKVYDARALRVVVGDK--------NGT-------- 322
+ +++R K +YSI+ K++R + + +YD ALRV + + +GT
Sbjct: 464 IEVAARSKEIYSIWQKLQRGRAQRLDHIYDLVALRVTIDPREDLSVVGTSGTNEMDRDEA 523
Query: 323 ----LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAV---QGPDGSA 375
L CY +L IVH+LW P+ G DYI PKP+GYQSLHT V G D +
Sbjct: 524 EKTRLRDDENGLCYYVLGIVHQLWHPVPGRVKDYIAFPKPNGYQSLHTTVVVDNGSDQAP 583
Query: 376 LEVQIRTQKMHEYAEHGLAAHWLYKE 401
LEVQIRT+ M AE+G+AAHW +KE
Sbjct: 584 LEVQIRTRAMDRTAEYGMAAHWYFKE 609
>gi|422023601|ref|ZP_16370105.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Providencia sneebia
DSM 19967]
gi|414092529|gb|EKT54205.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Providencia sneebia
DSM 19967]
Length = 745
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 NIQAEIYGRPKHIYSIWRKMKKKSLAFGELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP+G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ ++ A +L +V++ S+ ++FG + +LV GV + I QL G
Sbjct: 73 IGSLQAALLFPLVEENKLDEQSVIDDFGHSIHQLVKGVLEMDAIRQLK------ATQSGE 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ +++R MLL MV+D R V+IKLA+R+ ++R + + A+E I+ LA
Sbjct: 127 TSSVQVDNIRRMLLSMVEDFRCVVIKLAERIAHLREVKDASEDERVLAAKECSNIYAPLA 186
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+ LK ELED CF L P ++K+
Sbjct: 187 NRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|220907977|ref|YP_002483288.1| (p)ppGpp synthetase I SpoT/RelA [Cyanothece sp. PCC 7425]
gi|219864588|gb|ACL44927.1| (p)ppGpp synthetase I, SpoT/RelA [Cyanothece sp. PCC 7425]
Length = 748
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 88/146 (60%), Gaps = 13/146 (8%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
V AG LHDV++D + +E EFG EV +LV GV++LS IN +
Sbjct: 83 VAAGFLHDVIEDTTVTPEQLEAEFGPEVRQLVEGVTKLSKIN-------------FSKTE 129
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A R M L M D RV+ +KLADRLHNMRT+ LP K R +AQET ++ LA+RL
Sbjct: 130 RQAESFRRMFLAMAQDIRVIFVKLADRLHNMRTLEYLPEEKRRRIAQETRDVFAPLANRL 189
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMR 159
G+W K ELEDL F L+P+ +R+M+
Sbjct: 190 GIWRFKWELEDLSFKYLEPEAYRRMQ 215
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 83/134 (61%), Gaps = 10/134 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
LS R K LYSI+ KM R+ H++YD A+RV+V K+ CY +L IVH
Sbjct: 250 LSGRPKHLYSIYQKMERQQKEFHEIYDIAAIRVIVETKDE---------CYRVLAIVHDC 300
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ P+ F DYI PKP+ YQSLHT V G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 301 FKPVPNRFKDYIGLPKPNRYQSLHTVVIDQGGRPLEVQIRTMEMHRVAEYGIAAHWKYKE 360
Query: 402 TGNKL-QSISSMDE 414
G+ L Q +++ DE
Sbjct: 361 VGHSLGQHLTTADE 374
>gi|452975303|gb|EME75122.1| GTP pyrophosphokinase RelA [Bacillus sonorensis L12]
Length = 733
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIKADFSGRPKHIYSIYRKMAMQNKQFNEIYDLLAVRILVN---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGIAAH 343
Query: 397 WLYKE 401
W YKE
Sbjct: 344 WAYKE 348
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ G LHDVV+D +L ++E F +EVA LV GV++L + +
Sbjct: 70 TIAGGFLHDVVEDTSVTLEDLKEAFNEEVAMLVDGVTKLG------------KIKYKSQE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA R
Sbjct: 118 EQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISKIKWELEDTALRYLNPQQYYRI 203
>gi|411010656|ref|ZP_11386985.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Aeromonas aquariorum
AAK1]
gi|423199768|ref|ZP_17186350.1| RelA/SpoT family protein [Aeromonas hydrophila SSU]
gi|404628846|gb|EKB25617.1| RelA/SpoT family protein [Aeromonas hydrophila SSU]
Length = 737
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K +YSI+ KM++K + ++++D RA+RVV +Q CY+ L
Sbjct: 240 GVEAEVYGRPKHIYSIWRKMQKKHLEFNELFDVRAVRVVT---------KRLQDCYAALG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT +MH+ AE G+AAH
Sbjct: 291 IVHTHFHHIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTDQMHQDAELGVAAH 350
Query: 397 WLYKE 401
W YKE
Sbjct: 351 WRYKE 355
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ A I++ V+ S ++E+FG ++AKLV GV + I L HR
Sbjct: 71 TLKAAIIYPFVEAGLISQERMDEDFGPKIAKLVEGVLEMEAIRSLQTLHR------SETS 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
E+ +++R MLL MV+D R V+IKLA+R+ +R +AQE I+ LA+R
Sbjct: 125 PEQVDNVRRMLLAMVEDVRAVVIKLAERIACLREAKKADEETRVLMAQEITNIYAPLANR 184
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
LG+ LK ELEDL F L P ++++ L R R
Sbjct: 185 LGIGQLKWELEDLAFRYLHPDTYKQIAKQLDEKRLDRER 223
>gi|117621333|ref|YP_855361.1| GTP pyrophosphokinase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117562740|gb|ABK39688.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((p)ppGpp synthetase) [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 736
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K +YSI+ KM++K + ++++D RA+RVV +Q CY+ L
Sbjct: 240 GVEAEVYGRPKHIYSIWRKMQKKHLEFNELFDVRAVRVVT---------KRLQDCYAALG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT +MH+ AE G+AAH
Sbjct: 291 IVHTHFHHIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTDQMHQDAELGVAAH 350
Query: 397 WLYKE 401
W YKE
Sbjct: 351 WRYKE 355
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ A I++ V+ S ++E+FG ++AKLV GV + I L HR
Sbjct: 71 TLKAAIIYPFVEAGLISQERMDEDFGPKIAKLVEGVLEMEAIRSLQTLHR------SETS 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
E+ +++R MLL MV+D R V+IKLA+R+ +R +AQE I+ LA+R
Sbjct: 125 PEQVDNVRRMLLAMVEDVRAVVIKLAERIACLREAKKADEETRVLMAQEITNIYAPLANR 184
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
LG+ LK ELEDL F L P ++++ L R R
Sbjct: 185 LGIGQLKWELEDLAFRYLHPDTYKQIARQLDEKRLDRER 223
>gi|389571985|ref|ZP_10162073.1| GTP diphosphokinase [Bacillus sp. M 2-6]
gi|388428471|gb|EIL86268.1| GTP diphosphokinase [Bacillus sp. M 2-6]
Length = 736
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 99/170 (58%), Gaps = 12/170 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIKAEFSGRPKHIYSIYRKMVMQNKQFNEIYDLLAVRILVD---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTVEMHEIAEYGIAAH 343
Query: 397 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 446
W YKE +S S +E+ + S ++ + TD + SLK+
Sbjct: 344 WAYKEGK---ESAESTEEAVFQKKLSWFREILEFQNESTDAEEFMESLKI 390
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ G LHDVV+D +L ++E F +EVA LV GV++L + +
Sbjct: 70 TIAGGFLHDVVEDTDVTLEDLKEHFNEEVAMLVDGVTKLG------------KIKYKSQE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA R
Sbjct: 118 EQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISKIKWELEDTALRYLNPQQYYRI 203
>gi|418324872|ref|ZP_12936094.1| GTP diphosphokinase [Staphylococcus pettenkoferi VCU012]
gi|365223674|gb|EHM64950.1| GTP diphosphokinase [Staphylococcus pettenkoferi VCU012]
Length = 729
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 83/127 (65%), Gaps = 10/127 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM ++ +++D A+R++V +I CY++L +VH L
Sbjct: 238 INGRPKHIYSIYRKMVKQKKQFDQIFDLLAIRIIVN---------SINDCYAVLGLVHTL 288
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAAHWAYKE 348
Query: 402 TGNKLQS 408
G K+ S
Sbjct: 349 -GKKVNS 354
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 86/145 (59%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++ F +EVA +V GV++L + ++R +
Sbjct: 70 TIVAGFLHDVIEDTPYTFDDVKNIFNEEVAVIVEGVTKLKKV-----KYR-------SKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHN+RT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIALAKDVRVILVKLADRLHNVRTLKAMPRDKQVCISKETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQP-QIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDSVQYFR 202
>gi|284044641|ref|YP_003394981.1| (p)ppGpp synthetase I SpoT/RelA [Conexibacter woesei DSM 14684]
gi|283948862|gb|ADB51606.1| (p)ppGpp synthetase I, SpoT/RelA [Conexibacter woesei DSM 14684]
Length = 714
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K YSI+SKM RK +++YD A+RV+V +++ CY +
Sbjct: 213 GIHAEISGRAKHFYSIYSKMTRKGREFNEIYDLTAMRVIVD---------SVKDCYGAVG 263
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H LW P+ G F D++ PK + YQSLHT V GP+G LE+QIRT++MH+ AE G+AAH
Sbjct: 264 VIHSLWKPLPGRFKDFVAMPKFNMYQSLHTTVIGPEGRPLEIQIRTREMHDMAEFGIAAH 323
Query: 397 WLYKE 401
W+YK+
Sbjct: 324 WIYKQ 328
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 98/161 (60%), Gaps = 12/161 (7%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+T+VA +LHD V+D SL ++++FG+E+A LV GV++L+ + +
Sbjct: 48 TETLVAALLHDTVEDTSASLEDVQDKFGEEIAGLVDGVTKLT------------GLTFSS 95
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A + R M++ M D RV+LIKLADRLHNMRTI A+P K A+ETL I+ +A
Sbjct: 96 RDEAQAENYRKMMVAMASDIRVILIKLADRLHNMRTIEAMPKQKQIEKAKETLDIYAPIA 155
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
RLG+ A+K ELEDL FA L P+ + +++ + + R R
Sbjct: 156 HRLGIHAIKWELEDLAFATLHPRKYTEIKGLVNQQRTERER 196
Score = 42.4 bits (98), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 28/141 (19%)
Query: 573 EGKPVDSVVSRRSSDSVA-------------PTSMEASINNKVRLLRTMLRWEEQLRSEA 619
EG+P++ + R +A PTS E + K++ LR +L W++++
Sbjct: 299 EGRPLEIQIRTREMHDMAEFGIAAHWIYKQDPTSSEG--DGKLKWLRRLLDWQQEMSDPK 356
Query: 620 SLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKV----GLEGKLV 675
+ K + D V V P GE+ L +G+T D A +V G
Sbjct: 357 EFMDTL---KVDLFEDEV------FVFTPKGEVKSLAAGATPLDFAYEVHTDVGHRTVGA 407
Query: 676 LVNGQLVLPNTELKDGDIVEV 696
VNG++V + EL+ GDIVEV
Sbjct: 408 KVNGKMVPLSYELRSGDIVEV 428
>gi|347753839|ref|YP_004861403.1| (p)ppGpp synthetase RelA/SpoT family [Candidatus
Chloracidobacterium thermophilum B]
gi|347586357|gb|AEP10887.1| (p)ppGpp synthetase, RelA/SpoT family [Candidatus
Chloracidobacterium thermophilum B]
Length = 731
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 94/149 (63%), Gaps = 12/149 (8%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
V G+LHDVV+D +L +E++FG E+A LV G++++S I R R
Sbjct: 66 VTTGLLHDVVEDTHVTLEELEQQFGPEIAHLVDGLTKISNIEYTSREDR----------- 114
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A +R MLL MVDD RVVL+KLADRLHNMRT+ LPP K A AQETL I+ +A RL
Sbjct: 115 -QAETVRKMLLAMVDDIRVVLVKLADRLHNMRTLDYLPPEKRAAKAQETLDIYAPIAHRL 173
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADL 162
G+ ++ ELEDL F L P ++ +++ L
Sbjct: 174 GMGKIRGELEDLSFQYLYPDDYQHLKSIL 202
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 77/122 (63%), Gaps = 9/122 (7%)
Query: 280 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 339
V + R+K LYS++ K++ + + I +VYD A+RV+ D I CY+ + +VH
Sbjct: 232 VEIQGRIKRLYSLYRKLKERAISIDQVYDLMAVRVITQD---------IADCYAAVGVVH 282
Query: 340 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 399
+W PI G F D+I P+ + YQSLHT+V G G EVQIRT +MH+ AE G+AAHW Y
Sbjct: 283 NIWKPIPGRFKDWIGIPRNNLYQSLHTSVVGDIGHPFEVQIRTAEMHKIAEEGIAAHWRY 342
Query: 400 KE 401
KE
Sbjct: 343 KE 344
>gi|241889887|ref|ZP_04777185.1| GTP pyrophosphokinase [Gemella haemolysans ATCC 10379]
gi|241863509|gb|EER67893.1| GTP pyrophosphokinase [Gemella haemolysans ATCC 10379]
Length = 725
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 104/193 (53%), Gaps = 36/193 (18%)
Query: 243 KAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVG 302
+ K ++DA ++TS++A ++ ++ R K +YSI+ KM +++
Sbjct: 214 REKSIKDACSSITSILADN---------------NIKAQVTGRPKHIYSIYKKMVKQNKT 258
Query: 303 IHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQ 362
++YD A+RV+V ++ CY+ L +V+ LW+PI G DYI PKP+ YQ
Sbjct: 259 FDQIYDLLAVRVLVD---------SVADCYATLGLVNNLWVPIPGRIKDYIAMPKPNMYQ 309
Query: 363 SLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG------------NKLQSIS 410
SLHT V PDG LEVQIRT +MHE AE G+AAHW YKE N Q I+
Sbjct: 310 SLHTTVIAPDGQTLEVQIRTYEMHEIAEKGIAAHWAYKEGKKVNKNNNFYEKLNWFQKIA 369
Query: 411 SMDESDIEASSSL 423
DE++ A S +
Sbjct: 370 ENDETEATAESFM 382
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 12/159 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ AG LHDVV+D + I+E FG+++A +V GV++L +++ R ++
Sbjct: 70 TICAGFLHDVVEDTKYTFDDIKETFGEDIAVIVDGVTKL---DKVKFRSKK--------- 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A + R + + + D RV+ +KLADRLHNMRT+ + K R ++ ETL I+ LA R
Sbjct: 118 QSQAENHRKLFVSIAKDLRVIFVKLADRLHNMRTMKYMREEKQREISSETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
LG+ ++K ELED L P + + + S R +
Sbjct: 178 LGISSVKWELEDTSLRYLHPSQYFSIVGMMKQKRSAREK 216
>gi|16330670|ref|NP_441398.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803]
gi|383322412|ref|YP_005383265.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383325581|ref|YP_005386434.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383491465|ref|YP_005409141.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384436732|ref|YP_005651456.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803]
gi|451814828|ref|YP_007451280.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803]
gi|6647853|sp|P74007.1|SPOT_SYNY3 RecName: Full=Probable guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase; AltName: Full=Penta-phosphate
guanosine-3'-pyrophosphohydrolase; Short=(ppGpp)ase
gi|1653162|dbj|BAA18078.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803]
gi|339273764|dbj|BAK50251.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803]
gi|359271731|dbj|BAL29250.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359274901|dbj|BAL32419.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359278071|dbj|BAL35588.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407958589|dbj|BAM51829.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803]
gi|451780797|gb|AGF51766.1| (p)ppGpp 3'-pyrophosphohydrolase [Synechocystis sp. PCC 6803]
Length = 760
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 90/147 (61%), Gaps = 12/147 (8%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D S+ IE FG+E A LV GV++LS N +
Sbjct: 97 IAAGFLHDVVEDTDISIEQIEALFGEETASLVEGVTKLS------------KFNFSSTTE 144
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M D RV+++KLADRLHNMRT+ AL P K R +A+ET I+ LA+RL
Sbjct: 145 HQAENFRRMFLAMAKDIRVIVVKLADRLHNMRTLDALSPEKQRRIARETKDIFAPLANRL 204
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRA 160
G+W K ELEDL F L+P +RK+++
Sbjct: 205 GIWRFKWELEDLSFKYLEPDSYRKIQS 231
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 82/134 (61%), Gaps = 10/134 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
L R K LY I+ KM +D ++YD ALR++V K CY L +VH +
Sbjct: 265 LQGRPKHLYGIYYKMTSQDKAFEEIYDIAALRIIVESKGE---------CYRALSVVHDV 315
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ PI G F DYI PKP+ YQSLHT V G LE+QIRT++MH AE+G+AAHW YKE
Sbjct: 316 FKPIPGRFKDYIGLPKPNRYQSLHTTVLGLTSRPLEIQIRTEEMHHVAEYGIAAHWKYKE 375
Query: 402 T-GNKLQSISSMDE 414
+ G++ +++S DE
Sbjct: 376 SGGSENATLTSTDE 389
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 596 ASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 655
S + K LR +L W+ L+ ++ K N D V V P GE++ L
Sbjct: 385 TSTDEKFTWLRQLLDWQSDLKDAQEYVENL---KQNLFDDDVY------VFTPKGEVISL 435
Query: 656 RSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
G+T D A + VG K VNGQ + +T LK+GDIVE+
Sbjct: 436 ARGATPVDFAYRIHTEVGHHMKGARVNGQWLGVDTRLKNGDIVEI 480
>gi|289550601|ref|YP_003471505.1| GTP pyrophosphokinase [Staphylococcus lugdunensis HKU09-01]
gi|385784229|ref|YP_005760402.1| GTP pyrophosphokinase [Staphylococcus lugdunensis N920143]
gi|418413905|ref|ZP_12987121.1| GTP pyrophosphokinase [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|289180133|gb|ADC87378.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Staphylococcus
lugdunensis HKU09-01]
gi|339894485|emb|CCB53764.1| GTP pyrophosphokinase [Staphylococcus lugdunensis N920143]
gi|410877543|gb|EKS25435.1| GTP pyrophosphokinase [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 729
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 87/145 (60%), Gaps = 19/145 (13%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L +VH L
Sbjct: 238 INGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILGLVHTL 288
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAAHWAYKE 348
Query: 402 TG----------NKLQSISSMDESD 416
NKL + + E+D
Sbjct: 349 GKTVDEKTQDFQNKLNWLKELAEAD 373
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +E+A++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTAYTFDDVKEMFNEEIARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPRDKQIRISKETLEIYAPLADR 177
Query: 133 LGLWALKAELEDLCFAVLQP-QIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDSVQYFR 202
>gi|406941177|gb|EKD73736.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, partial
[uncultured bacterium]
Length = 392
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 100/171 (58%), Gaps = 12/171 (7%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
LI + + V+T+ A ILHDV++D + +I +FG EV+ LV GV++L+ IN H
Sbjct: 54 LILAEMRMDVETITAAILHDVIEDTSVNTTNIINQFGQEVSNLVDGVTKLTQIN--FENH 111
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 121
+A + R M++ M D R++L+KLADRLHNMRTI+ LP K R +A E
Sbjct: 112 ----------AQAQAENFRKMIMAMASDIRIILVKLADRLHNMRTIHGLPAKKRRRIALE 161
Query: 122 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 172
TL I+ +A+RLG+ A + ELEDL F L P ++ ++ + R+ +
Sbjct: 162 TLEIFAPIANRLGMHAFRVELEDLGFRALYPLRYKILKTAVEKAGGNRHEI 212
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 93/167 (55%), Gaps = 21/167 (12%)
Query: 280 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 339
V LSSR K LYSI+ KM K + ++ D R+ VG + CY +L ++H
Sbjct: 232 VNLSSRGKHLYSIYKKMHEKHLSFSEIMDVYGFRITVGK---------VDTCYRVLGLLH 282
Query: 340 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 399
L+ PI F DYI PK +GYQSLHT + GP G +E QIRT++MH+ AE+G+AAHWLY
Sbjct: 283 GLFKPISQRFKDYIAIPKANGYQSLHTILFGPYGVPIEAQIRTEEMHKVAENGIAAHWLY 342
Query: 400 KETGNKLQSISS--------MDESDIEASSSLSKDTDDHNPLDTDLF 438
K L + S M E D A +SL + +H + +DLF
Sbjct: 343 KTEKKALHDVQSRANAWLQGMVEMDQSARNSL--EFIEH--VKSDLF 385
>gi|399910414|ref|ZP_10778728.1| GTP pyrophosphokinase [Halomonas sp. KM-1]
Length = 758
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 84/132 (63%), Gaps = 11/132 (8%)
Query: 279 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 338
E ++ R K +YSI+ KM+RK + +V D RA+R++V P + CY++L +V
Sbjct: 256 EYEVNGRAKHIYSIWRKMKRKRIDFSQVNDVRAVRILV---------PEVTDCYTVLGLV 306
Query: 339 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 398
H W + EFDDYI NPK +GYQSLHTAV GP+ LE+QIRT MH+ AE G+ AHW
Sbjct: 307 HSRWHHVPNEFDDYIANPKKNGYQSLHTAVLGPENKVLEIQIRTFAMHDEAELGVCAHWR 366
Query: 399 YK--ETGNKLQS 408
YK +TG K S
Sbjct: 367 YKGHDTGGKSSS 378
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 8/157 (5%)
Query: 16 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINV-NQGTLGHE 74
A +L+ V + S+ ++ +FG EVA+L+AGV +++ I+ I V +QG + H+
Sbjct: 87 AAVLYRAVREGLISIDAVTRQFGKEVAELIAGVLQMAAISN-------IQVPSQGLVQHD 139
Query: 75 EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 134
+ ++LR ML+ M+DD RV LIK+A+R +R + P K VA+E I+ LA RLG
Sbjct: 140 QQDNLRKMLVTMIDDVRVALIKIAERTCALRQVKDAPREKRLQVAREVFDIYAPLAHRLG 199
Query: 135 LWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
+ +K ELEDL F L ++ + LA R+R
Sbjct: 200 IGQVKWELEDLSFRYLHEDDYKAIARQLAEKRLDRDR 236
>gi|291326699|ref|ZP_06574051.1| hypothetical protein PROVRETT_07548 [Providencia rettgeri DSM 1131]
gi|291313250|gb|EFE53703.1| GTP diphosphokinase [Providencia rettgeri DSM 1131]
Length = 494
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 286 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 345
LK +YSI+ KM++K + +++D RA+R+VV +Q CY+ L IVH + +
Sbjct: 4 LKHIYSIWRKMQKKSLAFDELFDVRAVRIVV---------ERLQDCYAALGIVHTHFRHL 54
Query: 346 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 405
EFDDY+ NPKP+GYQS+HT V GP+G LE+QIRT++MHE AE G+AAHW YKE
Sbjct: 55 PDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEIQIRTRQMHEDAELGVAAHWKYKEGATG 114
Query: 406 LQSISSMD 413
+ SS +
Sbjct: 115 IGKGSSYE 122
>gi|390559275|ref|ZP_10243626.1| GTP pyrophosphokinase [Nitrolancetus hollandicus Lb]
gi|390174152|emb|CCF82919.1| GTP pyrophosphokinase [Nitrolancetus hollandicus Lb]
Length = 721
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K + SI KM RK+ ++YD +RV+V +K CY L
Sbjct: 229 GIGAEISGREKHITSIARKMERKERSFDEIYDVLGIRVIVDEKKD---------CYGALG 279
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H +W PI GEFDDY+ PK S YQS+HT V GP+G LE+QIRT +MH AE+G+AAH
Sbjct: 280 VIHSIWHPIPGEFDDYVATPKESMYQSIHTVVLGPNGHPLEIQIRTHEMHYIAEYGIAAH 339
Query: 397 WLYKE 401
W YKE
Sbjct: 340 WRYKE 344
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 88/144 (61%), Gaps = 5/144 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +LHDVV+D ++ + FGD + +LV GV++L I + +
Sbjct: 58 ETLAAALLHDVVEDTDTTMEDLRTLFGDRIVRLVDGVTKLGRIRWAAETDHAVREKE--- 114
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A LR M L MVDD RVVLIKLADRLHNMRT+ +P AK A+ET+ I+ LA+
Sbjct: 115 --RQAESLRKMFLAMVDDVRVVLIKLADRLHNMRTLEHMPRAKQLRSAKETMEIYAPLAN 172
Query: 132 RLGLWALKAELEDLCFAVLQPQIF 155
RLG+W +K+ELEDL + PQ +
Sbjct: 173 RLGIWQIKSELEDLALRYVDPQTY 196
>gi|82751232|ref|YP_416973.1| GTP pyrophosphokinase [Staphylococcus aureus RF122]
gi|82656763|emb|CAI81192.1| GTP pyrophosphokinase [Staphylococcus aureus RF122]
Length = 736
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTYDMHEIAEHGVAAH 350
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 77 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 125 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 184
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 185 LGINTIKWELEDTALRYIDNVQYFR 209
>gi|418635800|ref|ZP_13198160.1| GTP diphosphokinase [Staphylococcus lugdunensis VCU139]
gi|374841502|gb|EHS04973.1| GTP diphosphokinase [Staphylococcus lugdunensis VCU139]
Length = 729
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 87/145 (60%), Gaps = 19/145 (13%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L +VH L
Sbjct: 238 INGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILGLVHTL 288
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAAHWAYKE 348
Query: 402 TG----------NKLQSISSMDESD 416
NKL + + E+D
Sbjct: 349 GKTVDEKTQDFQNKLNWLKELAEAD 373
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +E+A++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTAYTFDDVKEMFNEEIARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPRDKQIRISKETLEIYAPLADR 177
Query: 133 LGLWALKAELEDLCFAVLQP-QIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTSLRYIDSVQYFR 202
>gi|410622952|ref|ZP_11333772.1| GTP pyrophosphokinase [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410157414|dbj|GAC29146.1| GTP pyrophosphokinase [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 715
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 80/117 (68%), Gaps = 9/117 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM++K + +++D RALR+V DK +Q CY+ L VH +W
Sbjct: 236 RPKHIYSIWKKMQKKQLSFEELFDIRALRIV-ADK--------LQDCYAALGTVHTVWKH 286
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
I EFDDYI PK +GYQS+HT + GP G ++E+QIRTQKMH+ AE G+AAHW YKE
Sbjct: 287 IPKEFDDYIATPKQNGYQSIHTVIMGPQGKSVEIQIRTQKMHQDAELGVAAHWKYKE 343
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 13/150 (8%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
IE++FG + +L+ GV R+ I L R+R+ N+LR MLL MV+D R
Sbjct: 81 IEDQFGLSIKELILGVRRMDAIKTLQSRNRQ--------DENHVNNLRRMLLSMVEDVRA 132
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
V+IK+A+R+ + ++ VA E I+ LA+RLG+ LK ELEDL F L P
Sbjct: 133 VVIKMAERICTLHSVKEADEETRVIVAHECSSIYAPLANRLGIGQLKWELEDLSFRYLHP 192
Query: 153 QIFRKMRADLASMWSPRNRVGYSRRITTIV 182
+++ +A M + R+G + I IV
Sbjct: 193 NTYKR----IAEMLDEK-RIGREQYIIDIV 217
>gi|359433023|ref|ZP_09223368.1| GTP pyrophosphokinase [Pseudoalteromonas sp. BSi20652]
gi|357920332|dbj|GAA59617.1| GTP pyrophosphokinase [Pseudoalteromonas sp. BSi20652]
Length = 718
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K +YSI+ KM +K+ +++D RA+RVVV +Q CY L
Sbjct: 234 GIEAQVYGRPKHIYSIYKKMAQKNYEFDQLFDIRAMRVVV---------ERLQDCYGALG 284
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH W ++ EFDDY+ PK +GYQS+HT V GP+G +E+QIRT MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYVATPKQNGYQSIHTVVFGPEGKTVEIQIRTSDMHQDAELGVAAH 344
Query: 397 WLYKE 401
W+YKE
Sbjct: 345 WIYKE 349
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 78/134 (58%), Gaps = 9/134 (6%)
Query: 29 SLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVD 88
SL +E++ G VA L+ GV++++ I+ L +QG G + +++R MLL MV+
Sbjct: 84 SLEIVEKQLGHNVAMLLTGVAQMATISTL--------SHQGK-GTAQVDNIRKMLLTMVE 134
Query: 89 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFA 148
D R V+IKLA+++ ++R + + A+ET I+ LA+RLG+ LK ELEDL F
Sbjct: 135 DVRAVVIKLAEQVCHLRNVKNADEEERVIAAKETADIFAPLANRLGIGQLKWELEDLSFR 194
Query: 149 VLQPQIFRKMRADL 162
L P ++ + L
Sbjct: 195 YLHPDRYKSIAKQL 208
>gi|302342677|ref|YP_003807206.1| (p)ppGpp synthetase I SpoT/RelA [Desulfarculus baarsii DSM 2075]
gi|301639290|gb|ADK84612.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfarculus baarsii DSM 2075]
Length = 726
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ ++ R K SI+ KM+R++V I ++YD A RV+VG +I+ CY L
Sbjct: 233 GISCSVYGRPKHFASIYGKMQRRNVDISELYDLLAFRVLVG---------SIKDCYEALG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W P+ G F DYI PK + YQSLHTAV GP G +EVQIRT++MH AE G+AAH
Sbjct: 284 VVHTIWKPVPGRFRDYIGMPKANMYQSLHTAVVGPMGQRMEVQIRTEEMHRIAEEGIAAH 343
Query: 397 WLYKE 401
W YKE
Sbjct: 344 WRYKE 348
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 97/160 (60%), Gaps = 7/160 (4%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V ++ AG+LHD V+D +L I G EVA LV GV++++ + + + Q
Sbjct: 63 VASICAGLLHDTVEDTEATLADITALLGAEVASLVDGVTKITLLAAPAQAQPDASAMQ-- 120
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
A +LR M+L M +D RV+LIKLADRLHNMRT+ L P K R +AQET I+ +A
Sbjct: 121 -----AQNLRKMILAMANDIRVLLIKLADRLHNMRTLGYLKPEKQRRIAQETRDIYAPMA 175
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 170
RLG+ + ELEDL F L P+I+++++ ++A + RN
Sbjct: 176 HRLGIRRWQIELEDLAFYYLDPEIYQRIKEEVAQSQAERN 215
>gi|218441725|ref|YP_002380054.1| (p)ppGpp synthetase I SpoT/RelA [Cyanothece sp. PCC 7424]
gi|218174453|gb|ACK73186.1| (p)ppGpp synthetase I, SpoT/RelA [Cyanothece sp. PCC 7424]
Length = 749
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 90/149 (60%), Gaps = 10/149 (6%)
Query: 267 ELLISTSYIPGMEV-TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 325
E L Y G++V + R K LY I+ KM+R+ H++YD ALR++V K
Sbjct: 238 ETLRERLYQIGVKVLEIQGRPKHLYGIYDKMQRQHKEFHEIYDIAALRILVETK------ 291
Query: 326 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 385
+ CY L IVH ++ PI G F DYI PKP+ YQSLHT V G + LEVQIRT +M
Sbjct: 292 ---EECYRALAIVHDVFKPIPGRFKDYIGLPKPNRYQSLHTTVVGLNCRPLEVQIRTLEM 348
Query: 386 HEYAEHGLAAHWLYKETGNKLQSISSMDE 414
H AE+G+AAHW YKETG +I+S DE
Sbjct: 349 HHIAEYGIAAHWKYKETGGSTYNITSEDE 377
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 100/177 (56%), Gaps = 19/177 (10%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D +L IEE FG EV +LV GV++LS N + R
Sbjct: 86 IAAGFLHDVVEDTEVTLEEIEERFGLEVRQLVEGVTKLSKFNFSSKTER----------- 134
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M D RV+++KLADRLHNMRT+ L P K +A ET I+ LA+RL
Sbjct: 135 -QAENFRRMFLAMAKDIRVIVVKLADRLHNMRTLEHLAPEKQCRIALETREIFAPLANRL 193
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDER 190
G+ K ELEDLCF L+P+ +R+++ +A RV RI I S L ER
Sbjct: 194 GIGRFKWELEDLCFKYLEPEAYREIQTLVAE-----KRVDRETRIDKI--SETLRER 243
>gi|260437936|ref|ZP_05791752.1| GTP diphosphokinase [Butyrivibrio crossotus DSM 2876]
gi|292809687|gb|EFF68892.1| GTP diphosphokinase [Butyrivibrio crossotus DSM 2876]
Length = 762
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 94/152 (61%), Gaps = 11/152 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T++AGILHDV++D + I EFG+EVA LV GV++L+ QL H +I +
Sbjct: 89 ETIIAGILHDVIEDTEVTYEDISREFGEEVALLVDGVTKLT---QLNYEHDKIEI----- 140
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A +LR M L M D RV+LIKLADRLHNMRT+ P K ++ET+ I+ +A
Sbjct: 141 ---QAENLRKMFLAMAKDIRVILIKLADRLHNMRTMQYQKPEKQIEKSRETMEIYSPIAQ 197
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ +K EL+DL LQP ++ K+ DL
Sbjct: 198 RLGISKIKVELDDLSLMYLQPDVYHKLEHDLT 229
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 78/126 (61%), Gaps = 9/126 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ T+ R+K +SI+ KM +D + ++YD A+R++V I+ CY++L
Sbjct: 254 GINYTIDGRVKHFFSIYKKMVNQDKTLDQIYDLFAVRIIVD---------TIKDCYAVLG 304
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H ++ PI G F DYI PKP+ YQSLHT + G E+QIRT +MH AE+G+AAH
Sbjct: 305 LIHEMYKPIPGRFKDYIAMPKPNMYQSLHTTLISQTGQPFEIQIRTYEMHRTAEYGIAAH 364
Query: 397 WLYKET 402
W YKE
Sbjct: 365 WKYKEN 370
>gi|317495495|ref|ZP_07953863.1| RelA/SpoT family protein [Gemella morbillorum M424]
gi|316914309|gb|EFV35787.1| RelA/SpoT family protein [Gemella morbillorum M424]
Length = 726
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 21/159 (13%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ ++ R K +YSI+ KM +++ ++YD A+RV+V ++ CY+ L
Sbjct: 233 NIKAQVTGRPKHIYSIYKKMVKQNKTFDQIYDLLAVRVLVN---------SVADCYATLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+V+ LW+PI G DYI PKP+ YQSLHT V PDG LEVQIRT +MHE AE G+AAH
Sbjct: 284 LVNNLWVPIPGRIKDYIAMPKPNMYQSLHTTVIAPDGQTLEVQIRTYEMHEIAEKGIAAH 343
Query: 397 WLYKETG------------NKLQSISSMDESDIEASSSL 423
W YKE N Q I+ DE++ A S +
Sbjct: 344 WAYKEGKKVNKNNNFYEKLNWFQKIAENDETEATAESFM 382
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 84/143 (58%), Gaps = 12/143 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ AG LHDVV+D + I++ FG+++A +V GV++L +++ R R+
Sbjct: 70 TICAGFLHDVVEDTKYTFEDIQQTFGEDIAVIVDGVTKL---DKVKFRSRK--------- 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A + R + + + D RV+ +KLADRLHNMRT+ + K R ++ ETL I+ LA R
Sbjct: 118 QSQAENHRKLFVSIAKDLRVIFVKLADRLHNMRTMKYMREEKQREISSETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIF 155
LG+ ++K ELED L P +
Sbjct: 178 LGISSIKWELEDTSLRYLHPSQY 200
>gi|406886013|gb|EKD33114.1| hypothetical protein ACD_76C00094G0045 [uncultured bacterium]
Length = 496
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 97/162 (59%), Gaps = 13/162 (8%)
Query: 281 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 340
++ RLK L+S++ K+ R + I+KV+D A+RV+V D + CY+ L I+H+
Sbjct: 233 SVHGRLKHLFSLYKKLLRFERDINKVHDLIAVRVIVND---------VADCYAALGILHQ 283
Query: 341 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 400
LW P+ G DYI PKP+GYQSLHT V +G +E QIRT +MHE AE+G+A+HW YK
Sbjct: 284 LWRPLAGRIKDYIAQPKPNGYQSLHTTVFADNGQIVEFQIRTPQMHERAEYGIASHWQYK 343
Query: 401 ETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDT---DLFQ 439
E K + I+ ++E + LS D LD D+FQ
Sbjct: 344 EADKKTKQIAWVEEL-AKIQKELSATPDFMTRLDEMKLDMFQ 384
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 82/143 (57%), Gaps = 13/143 (9%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
V AG+LHDV +D +L + E FGD++A +V GV++L + R+R +
Sbjct: 67 VAAGLLHDVPEDTPRTLEDVREHFGDDIASMVEGVTKLEKV-----RYRGLE-------- 113
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
A +LR M + M D RVV IK DRLHNM T+Y +P K +A+E L I+ +A RL
Sbjct: 114 RYAENLRKMFVAMASDIRVVFIKFCDRLHNMETLYIIPERKRERIAKEVLEIYAPVAHRL 173
Query: 134 GLWALKAELEDLCFAVLQPQIFR 156
G+ ++ +LED F + P+ ++
Sbjct: 174 GMGEIRGQLEDFAFRYVYPKEYQ 196
>gi|339010669|ref|ZP_08643239.1| GTP pyrophosphokinase [Brevibacillus laterosporus LMG 15441]
gi|421875402|ref|ZP_16306994.1| GTP pyrophosphokinase [Brevibacillus laterosporus GI-9]
gi|338772824|gb|EGP32357.1| GTP pyrophosphokinase [Brevibacillus laterosporus LMG 15441]
gi|372455610|emb|CCF16543.1| GTP pyrophosphokinase [Brevibacillus laterosporus GI-9]
Length = 727
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E ++ R K +YSI+ KM ++ +++YD ALR++V D I+ CY++L I
Sbjct: 230 IEAEIAGRPKHIYSIYKKMVSQNKQFNEIYDLLALRIIVND---------IRDCYAVLGI 280
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT MH AE G+AAHW
Sbjct: 281 VHTLWKPMPGRFKDYIAMPKANMYQSLHTTVIGPKGEPLEVQIRTWDMHRTAEIGIAAHW 340
Query: 398 LYKETGNKLQ 407
YKE ++Q
Sbjct: 341 AYKEGKGEVQ 350
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 84/152 (55%), Gaps = 24/152 (15%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYIN------QLLRRHRRINV 66
TV AG LHDVV+D +L + +EFG EVA LV GV++L I QL HR+
Sbjct: 66 TVAAGFLHDVVEDTDITLDDLRKEFGSEVAHLVDGVTKLEKIKYKSKEEQLAENHRK--- 122
Query: 67 NQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 126
ML+ M D RV+LIKLADRLHNMRT+ + K R ++ ETL I+
Sbjct: 123 ---------------MLVAMAQDIRVILIKLADRLHNMRTLRHMSEEKQREISDETLEIF 167
Query: 127 CSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA RLG+ +K ELED L PQ + ++
Sbjct: 168 APLAHRLGIAFVKWELEDTALRYLNPQQYYRI 199
>gi|145300353|ref|YP_001143194.1| GTP pyrophosphokinase [Aeromonas salmonicida subsp. salmonicida
A449]
gi|418362268|ref|ZP_12962907.1| GTP pyrophosphokinase [Aeromonas salmonicida subsp. salmonicida
01-B526]
gi|142853125|gb|ABO91446.1| GTP pyrophosphokinase [Aeromonas salmonicida subsp. salmonicida
A449]
gi|356686530|gb|EHI51128.1| GTP pyrophosphokinase [Aeromonas salmonicida subsp. salmonicida
01-B526]
Length = 739
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K +YSI+ KM++K + ++++D RA+RVV +Q CY+ L
Sbjct: 240 GVEAEVYGRPKHIYSIWRKMQKKHLEFNELFDVRAVRVVT---------KRLQDCYAALG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT +MH+ AE G+AAH
Sbjct: 291 IVHTHFHHIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTDQMHQDAELGVAAH 350
Query: 397 WLYKE 401
W YKE
Sbjct: 351 WRYKE 355
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ A I++ V+ S ++E+FG ++AKLV GV + I L HR
Sbjct: 71 TLKAAIIYPFVEAGLISQERMDEDFGPKIAKLVEGVLEMEAIRSLQTLHR------SETS 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
E+ +++R MLL MV+D R V+IKLA+R+ +R +AQE I+ LA+R
Sbjct: 125 PEQVDNVRRMLLAMVEDVRAVVIKLAERIACLREAKKADEETRVLMAQEITNIYAPLANR 184
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
LG+ LK ELEDL F L P ++++ L R R
Sbjct: 185 LGIGQLKWELEDLAFRYLHPDTYKQIAKQLDEKRLDRER 223
>gi|433463434|ref|ZP_20420988.1| GTP pyrophosphokinase [Halobacillus sp. BAB-2008]
gi|432187529|gb|ELK44809.1| GTP pyrophosphokinase [Halobacillus sp. BAB-2008]
Length = 734
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ L+ R K LYSI+ KM ++ +++YD A+R+ V +I+ CY++L
Sbjct: 233 NIQADLNGRPKHLYSIYRKMVLQNKQFNEIYDLLAVRITV---------ESIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNLYQSLHTTVIGPKGDPLEVQIRTHDMHEIAEYGIAAH 343
Query: 397 WLYKE 401
W YKE
Sbjct: 344 WAYKE 348
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 83/147 (56%), Gaps = 12/147 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+TV G LHDVV+D +L I + F EVA LV GV++L I +
Sbjct: 69 ETVAGGFLHDVVEDTDITLEEIGDAFNTEVAMLVDGVTKLGKIKYKSKEA---------- 118
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA
Sbjct: 119 --QQAENHRKMFVAMAKDIRVILIKLADRLHNMRTLKHLPAEKQRRISNETLEIFAPLAH 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELED L PQ + ++
Sbjct: 177 RLGISTIKWELEDTALRYLNPQQYYRI 203
Score = 38.9 bits (89), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 592 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQS-KLGGKANGNPDSVVPGEVVIVCWPNG 650
++ E S K+ R +L W+ + +S K+ + ++V V P G
Sbjct: 352 SAAEQSFEEKLTWFREILEWQNETHDAEEFMESLKVD----------LFSDMVYVFTPKG 401
Query: 651 EIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 696
+++ L SGS D A ++ E G + VNG++ + ELK GDIV+V
Sbjct: 402 DVIELPSGSVPVDFAYRIHTEVGNQTIGAKVNGKMEPLDYELKTGDIVDV 451
>gi|336437345|ref|ZP_08617051.1| hypothetical protein HMPREF0988_02636 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336005471|gb|EGN35516.1| hypothetical protein HMPREF0988_02636 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 767
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 88/137 (64%), Gaps = 9/137 (6%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ + R+K +SI+ KM ++ + +VYD A+R++V +++ CY+ L +
Sbjct: 261 IQAKVYGRVKHFFSIYKKMVNQNKTLDQVYDLFAVRIIV---------DSVKDCYAALGV 311
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
+H ++ PI G F DYI PKP+ YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW
Sbjct: 312 IHEMYTPIPGRFKDYIAMPKPNMYQSLHTTLMGPSGQPFEIQIRTEEMHKTAEYGIAAHW 371
Query: 398 LYKETGNKLQSISSMDE 414
YKE G+ + + + +E
Sbjct: 372 KYKEGGDAAKVVQAQEE 388
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 105/173 (60%), Gaps = 13/173 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+VAG+LHD V+D +L + EFG+EVA LV GV++L QL ++ +
Sbjct: 95 ETIVAGMLHDAVEDTDMTLDDVSREFGEEVALLVDGVTKLG---QLSYSQDKLEI----- 146
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A +LR M L M D RV++IKLADRLHNMRT+ + P K + A+ET+ I+ +A
Sbjct: 147 ---QAENLRKMFLAMAKDIRVIIIKLADRLHNMRTLEFMRPEKQKEKAKETMDIYAPIAQ 203
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 184
RLG+ +K EL+DL QP++++++ DL + R + ++I + VS+
Sbjct: 204 RLGISKIKIELDDLSLKYSQPEVYQQLVHDLNERKTKREE--FVQQIVSEVST 254
>gi|379795989|ref|YP_005325987.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872979|emb|CCE59318.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 736
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVNEKDQNYQNKLNWLKELAEADHTSSDA 386
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 77 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 125 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 184
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 185 LGINTIKWELEDTALRYIDNVQYFR 209
>gi|329767283|ref|ZP_08258809.1| hypothetical protein HMPREF0428_00506 [Gemella haemolysans M341]
gi|328836205|gb|EGF85875.1| hypothetical protein HMPREF0428_00506 [Gemella haemolysans M341]
Length = 725
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 21/159 (13%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ ++ R K +YSI+ KM +++ ++YD A+RV+V ++ CY+ L
Sbjct: 233 NIKAQVTGRPKHIYSIYKKMVKQNKTFDQIYDLLAVRVLVD---------SVADCYATLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+V+ LW+PI G DYI PKP+ YQSLHT V PDG LEVQIRT +MHE AE G+AAH
Sbjct: 284 LVNNLWVPIPGRIKDYIAMPKPNMYQSLHTTVIAPDGQTLEVQIRTYEMHEIAEKGIAAH 343
Query: 397 WLYKETG------------NKLQSISSMDESDIEASSSL 423
W YKE N Q I+ DE++ A S +
Sbjct: 344 WAYKEGKKVNKNNNFYEKLNWFQKIAENDETEATAESFM 382
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 83/140 (59%), Gaps = 12/140 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ AG LHDVV+D + I+E FG+++A +V GV++L +++ R ++
Sbjct: 70 TICAGFLHDVVEDTKYTFDDIKETFGEDIAVIVDGVTKL---DKVKFRSKK--------- 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A + R + + + D RV+ +KLADRLHNMRT+ + K R ++ ETL I+ LA R
Sbjct: 118 QSQAENHRKLFVSIAKDLRVIFVKLADRLHNMRTMKYMREEKQREISSETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQP 152
LG+ ++K ELED L P
Sbjct: 178 LGISSVKWELEDTSLRYLHP 197
>gi|171058582|ref|YP_001790931.1| (p)ppGpp synthetase I SpoT/RelA [Leptothrix cholodnii SP-6]
gi|170776027|gb|ACB34166.1| (p)ppGpp synthetase I, SpoT/RelA [Leptothrix cholodnii SP-6]
Length = 758
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM+ K + +V+D ALRV+V D ++ CY+ L
Sbjct: 254 GVQAQVQGRPKHIYSIWKKMQGKSLDFSRVFDVSALRVIVAD---------VRDCYAALS 304
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH LW + EFDDYI PK +GYQSLHT V + E+QIRT++MHE+AE G+AAH
Sbjct: 305 RVHELWHALPDEFDDYIARPKANGYQSLHTVVLDDEQRPFEIQIRTREMHEHAESGVAAH 364
Query: 397 WLYKETGNK 405
W YKE G+K
Sbjct: 365 WAYKEAGSK 373
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRV 92
+ + FG A LV +L + + R +Q L E+ +R MLL D RV
Sbjct: 100 VSQAFGPSYASLVTHTRKLVKLQRSARDALLEETDQEVLA-EQLERVRKMLLAFSHDLRV 158
Query: 93 VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 152
VL++LA RL +R A RA+A+E+ ++ LA+RLG+W +K ELEDL F LQP
Sbjct: 159 VLLRLASRLQTLRFHAASRTPCPRALARESQQVFAPLANRLGIWQIKWELEDLAFRFLQP 218
Query: 153 QIFRKM 158
+ ++++
Sbjct: 219 EQYKRI 224
>gi|254994034|ref|ZP_05276224.1| (p)ppGpp synthetase [Listeria monocytogenes FSL J2-064]
Length = 711
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 397 WLYKETGNKLQSISSMD 413
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 86/146 (58%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV +G LHDVV+D +L +EE FG EVA LV GV++L I + H
Sbjct: 70 TVASGFLHDVVEDTPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE--------- 118
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA R
Sbjct: 119 -QQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISRVKWELEDTALRYLNPQQYYRI 203
>gi|315658096|ref|ZP_07910968.1| GTP diphosphokinase [Staphylococcus lugdunensis M23590]
gi|315496425|gb|EFU84748.1| GTP diphosphokinase [Staphylococcus lugdunensis M23590]
Length = 758
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 87/145 (60%), Gaps = 19/145 (13%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L +VH L
Sbjct: 267 INGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILGLVHTL 317
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 318 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAAHWAYKE 377
Query: 402 TG----------NKLQSISSMDESD 416
NKL + + E+D
Sbjct: 378 GKTVDEKTQDFQNKLNWLKELAEAD 402
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +E+A++V GV++L V +
Sbjct: 99 TIVAGFLHDVIEDTAYTFDDVKEMFNEEIARIVDGVTKLK------------KVKYRSKE 146
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 147 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPRDKQIRISKETLEIYAPLADR 206
Query: 133 LGLWALKAELEDLCFAVLQP-QIFR 156
LG+ +K ELED + Q FR
Sbjct: 207 LGINTIKWELEDTALRYIDSVQYFR 231
>gi|260771268|ref|ZP_05880195.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio furnissii CIP
102972]
gi|260613865|gb|EEX39057.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio furnissii CIP
102972]
Length = 741
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
+ + +S R K +YSI+ KM++K++ +++D RA+R++ DK +Q CY+
Sbjct: 241 VSSINAEVSGRPKHIYSIWRKMQKKNLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYRHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVA 351
Query: 395 AHWLYKE 401
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 110/215 (51%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA +L + +EE +G E+ KL+ GV ++ I QL NV QG+
Sbjct: 74 TLVAAVLFPIATSGLLDREELEEHYGKEIIKLINGVEEMAAIGQL-------NVTVQGSE 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+R + P RA A+E I+ LA+
Sbjct: 127 ASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKDQPDEVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ L+ R+ + I V+ +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----RRIVREQYIRDFVNDLRNEMSV 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+S + + +H+ S+ + + + + FD L D R
Sbjct: 242 SSINAEVSGRPKHIYSIWRKMQKKNLAFDELFDVR 276
>gi|160903362|ref|YP_001568943.1| (p)ppGpp synthetase I SpoT/RelA [Petrotoga mobilis SJ95]
gi|160361006|gb|ABX32620.1| (p)ppGpp synthetase I, SpoT/RelA [Petrotoga mobilis SJ95]
Length = 712
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 108/175 (61%), Gaps = 9/175 (5%)
Query: 2 LIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 61
LI + K VDT++AG+LHDVV+D S+ I++ FG +VA +V+GV+++S L+ +
Sbjct: 59 LILAGLKMDVDTIIAGLLHDVVEDCGVSIDKIKDLFGIDVANIVSGVTKISN----LKLN 114
Query: 62 RRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 121
R+N N E+ +R ML M +D RV+++KLADRLHNMRT+ + K A A E
Sbjct: 115 ERLNENDMK-SLEKVETIRKMLFAMSEDIRVIIVKLADRLHNMRTLEFVDRKKQIAKADE 173
Query: 122 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSR 176
TL I+ +A RLG++ +K ELEDL F L P+ + DL + + R+G +R
Sbjct: 174 TLKIYAPIAHRLGIYKMKEELEDLSFRYLYPETY----FDLKTKIEEKIRLGQNR 224
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 99/165 (60%), Gaps = 15/165 (9%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ T+ R K LYSI+ KM RK + ++YD ALR++ D+N CY++L I
Sbjct: 241 IKATVEGRSKHLYSIWDKMIRKGKTLDEIYDYIALRIITEDQNK---------CYAVLGI 291
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
+H +W P+ G DYI PK +GY+SLHT V G LE+QIR +MHE AE+GLAAHW
Sbjct: 292 IHSIWSPVPGRIKDYIATPKFNGYKSLHTTVITHKGDPLEIQIRDWEMHEEAEYGLAAHW 351
Query: 398 LYKE--TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQK 440
+YKE + KL+ ++ + +E ++++ + ++T+L K
Sbjct: 352 VYKEGVSQEKLKFLTDL----MELHRYIAQNAFELKDIETNLLSK 392
>gi|374709317|ref|ZP_09713751.1| (p)ppGpp synthetase I SpoT/RelA [Sporolactobacillus inulinus CASD]
Length = 724
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 91/142 (64%), Gaps = 14/142 (9%)
Query: 270 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 329
+ + +IP +S R K +YSI+ KM + +++YD A+R++V I+
Sbjct: 223 VKSVHIPA---EVSGRPKHIYSIYRKMVNQHKQFNEIYDLFAVRIIV---------KTIK 270
Query: 330 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 389
CY++L I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT++MH+ A
Sbjct: 271 DCYAILGIIHTHWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTEEMHDVA 330
Query: 390 EHGLAAHWLYKETGNKLQSISS 411
E+G+AAHW YKE K+++I++
Sbjct: 331 EYGIAAHWAYKE--GKVKNINN 350
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 87/148 (58%), Gaps = 12/148 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V T+V+G LHDVV+D +L I +FGD VA+LV GV++L N +
Sbjct: 62 VTTIVSGFLHDVVEDTRVTLDDIRVKFGDNVAELVDGVTKLR------------NFEYTS 109
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
++A + R M + M D R V++KLADRLHNMRT+ + K A ETL I+ LA
Sbjct: 110 KEDQQAENHRKMFVAMARDLRCVIVKLADRLHNMRTLKYMRHEKQIQKANETLEIYAPLA 169
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+ A+K ELED+ L+PQ + K+
Sbjct: 170 NRLGISAIKWELEDISLRYLKPQQYYKI 197
>gi|375129952|ref|YP_004992051.1| GTP pyrophosphokinase [Vibrio furnissii NCTC 11218]
gi|315179125|gb|ADT86039.1| GTP pyrophosphokinase [Vibrio furnissii NCTC 11218]
Length = 741
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 275 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 334
+ + +S R K +YSI+ KM++K++ +++D RA+R++ DK +Q CY+
Sbjct: 241 VSSINAEVSGRPKHIYSIWRKMQKKNLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 335 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 394
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYRHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVA 351
Query: 395 AHWLYKE 401
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 110/215 (51%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA +L + +EE +G E+ KL+ GV ++ I QL NV QG+
Sbjct: 74 TLVAAVLFPIATSGLLDREELEEHYGKEIIKLINGVEEMAAIGQL-------NVTVQGSE 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+R + P RA A+E I+ LA+
Sbjct: 127 ASAQVDNVRRMLLAMVDDFRCVVIKLAERICNLREVKDQPDDVRRAAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F QP ++++ L+ R+ + I V+ +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----RRIVREQYIRDFVNDLRNEMSV 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+S + + +H+ S+ + + + + FD L D R
Sbjct: 242 SSINAEVSGRPKHIYSIWRKMQKKNLAFDELFDVR 276
>gi|94265180|ref|ZP_01288942.1| RelA/SpoT protein [delta proteobacterium MLMS-1]
gi|93454321|gb|EAT04628.1| RelA/SpoT protein [delta proteobacterium MLMS-1]
Length = 723
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 79/118 (66%), Gaps = 9/118 (7%)
Query: 284 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 343
R K LYSI K+ +++ + KVYD A R++VGD I+ CY+ L I+H LW
Sbjct: 241 GRPKHLYSIHKKLLVQNITLDKVYDKVAFRIIVGD---------IKECYTALGIIHSLWA 291
Query: 344 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
PIDG F D+I +PK +GY+S+HT+V GPDG +E+QIRT++M A G+AAHW YKE
Sbjct: 292 PIDGRFKDFISHPKANGYRSVHTSVIGPDGDFMEIQIRTEEMDRIASEGIAAHWAYKE 349
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 102/173 (58%), Gaps = 16/173 (9%)
Query: 13 TVVAGILHDVVDDACESL--GSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
TV AG+LH + E L + E+FG +VA +VAG +R++ + + N +
Sbjct: 68 TVTAGLLHGALKQKEEPLSQAKLAEQFGVDVAAIVAGATRITAV--------QFNSHLAY 119
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A ++R MLL M D RV+L++LADRLH+M+T++ A +AQET+ ++ LA
Sbjct: 120 ----QAENIRKMLLAMAADIRVLLLRLADRLHDMQTLHLEDRELAVEIAQETMDLYAPLA 175
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 183
SRLG+ +K ELEDL FA LQP ++++ A + + S +R Y RI ++S
Sbjct: 176 SRLGIDWIKRELEDLAFAQLQPGAYQQLTAKIQT--SLPDREAYVERIKELLS 226
>gi|335046678|ref|ZP_08539701.1| GTP diphosphokinase [Oribacterium sp. oral taxon 108 str. F0425]
gi|363896423|ref|ZP_09322974.1| hypothetical protein HMPREF9624_01718 [Oribacterium sp. ACB7]
gi|333760464|gb|EGL38021.1| GTP diphosphokinase [Oribacterium sp. oral taxon 108 str. F0425]
gi|361960709|gb|EHL13942.1| hypothetical protein HMPREF9624_01718 [Oribacterium sp. ACB7]
Length = 755
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 82/127 (64%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R+K +SI+ KM ++ I ++YD A+R++V +++ CY++L
Sbjct: 249 GIEANIKGRIKHFFSIYKKMVNQNKTIDQIYDLFAIRIIV---------ESVRDCYAVLG 299
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H+++ PI G F DYI PKP+ YQSLHT V G DG E+QIRT +MH AE G+AAH
Sbjct: 300 VIHKMYRPIPGRFKDYIAMPKPNMYQSLHTTVIGRDGVPFEIQIRTFEMHRTAEFGIAAH 359
Query: 397 WLYKETG 403
W YKE G
Sbjct: 360 WKYKEQG 366
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 92/144 (63%), Gaps = 11/144 (7%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ AG+LHDVV+D +L +E+EF +VA LV GV++L+ ++N+N +
Sbjct: 84 ETIAAGLLHDVVEDTGMTLEEVEKEFNPDVATLVDGVTKLT----------KLNLNSDKV 133
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A +LR M + M D RV++IKLADRLHN+RT+ P K + A+E+L I+ LA
Sbjct: 134 -EMQAENLRKMFVSMAKDIRVIIIKLADRLHNLRTLEYQSPEKRKEKARESLEIYSPLAD 192
Query: 132 RLGLWALKAELEDLCFAVLQPQIF 155
RLG+ +K E++DL L+P+++
Sbjct: 193 RLGISKIKIEMDDLSLKYLEPEVY 216
>gi|289434803|ref|YP_003464675.1| GTP pyrophosphokinase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171047|emb|CBH27589.1| GTP pyrophosphokinase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 738
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 397 WLYKETGNKLQSISSMD 413
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 87/146 (59%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV +G LHDVV+D +L +EEEFG EVA LV GV++L I + H
Sbjct: 70 TVASGFLHDVVEDTPVTLADLEEEFGSEVAMLVDGVTKLGKIK--YKSHEE--------- 118
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA R
Sbjct: 119 -QQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISRVKWELEDTALRYLNPQQYYRI 203
>gi|116872952|ref|YP_849733.1| GTP pyrophosphokinase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116741830|emb|CAK20954.1| GTP pyrophosphokinase [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 738
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 397 WLYKETGNKLQSISSMD 413
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 85/146 (58%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV +G LHDVV+D +L +EE F EVA LV GV++L I + H
Sbjct: 70 TVASGFLHDVVEDTPVTLADLEEAFDSEVAMLVDGVTKLGKIK--YKSHEE--------- 118
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA R
Sbjct: 119 -QQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISRVKWELEDTALRYLNPQQYYRI 203
>gi|347548906|ref|YP_004855234.1| putative (p)ppGpp synthetase [Listeria ivanovii subsp. ivanovii PAM
55]
gi|346981977|emb|CBW85962.1| Putative (p)ppGpp synthetase [Listeria ivanovii subsp. ivanovii PAM
55]
Length = 738
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 397 WLYKETGNKLQSISSMD 413
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 86/146 (58%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV +G LHDVV+D +L +EE FG EVA LV GV++L I + H
Sbjct: 70 TVASGFLHDVVEDTPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE--------- 118
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA R
Sbjct: 119 -QQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHLPVEKQRRISNETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISRVKWELEDTALRYLNPQQYYRI 203
>gi|314933798|ref|ZP_07841163.1| GTP diphosphokinase [Staphylococcus caprae C87]
gi|313653948|gb|EFS17705.1| GTP diphosphokinase [Staphylococcus caprae C87]
Length = 734
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 87/145 (60%), Gaps = 19/145 (13%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM ++ +++D A+R++V +I CY++L +VH L
Sbjct: 243 INGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRIIVN---------SINDCYAILGLVHTL 293
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 294 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAAHWAYKE 353
Query: 402 TG----------NKLQSISSMDESD 416
NKL + + E+D
Sbjct: 354 GKTVNEKTQDFQNKLNWLKELAETD 378
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 88/145 (60%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + +++ F +EVA++V GV++L + ++R +
Sbjct: 75 TIVAGFLHDVIEDTPYTFEDVKDMFNEEVARIVDGVTKLKKV-----KYR-------SKE 122
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 123 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQVRISKETLEIYAPLAHR 182
Query: 133 LGLWALKAELEDLCFAVLQP-QIFR 156
LG+ +K ELED + Q FR
Sbjct: 183 LGINTIKWELEDTALRYIDSVQYFR 207
>gi|407980717|ref|ZP_11161494.1| GTP diphosphokinase [Bacillus sp. HYC-10]
gi|407412525|gb|EKF34317.1| GTP diphosphokinase [Bacillus sp. HYC-10]
Length = 736
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 99/170 (58%), Gaps = 12/170 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIKAEFSGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRILVD---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTVEMHEIAEYGIAAH 343
Query: 397 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 446
W YKE +S S +E+ + S ++ + TD + SLK+
Sbjct: 344 WAYKEGK---ESAESTEEAVFQKKLSWFREILEFQNESTDAEEFMESLKI 390
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ G LHDVV+D +L ++E F +EVA LV GV++L + +
Sbjct: 70 TIAGGFLHDVVEDTDVTLEDLKEHFNEEVAMLVDGVTKLG------------KIKYKSQE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA R
Sbjct: 118 EQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISKIKWELEDTALRYLNPQQYYRI 203
>gi|312881711|ref|ZP_07741488.1| GTP pyrophosphokinase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309370601|gb|EFP98076.1| GTP pyrophosphokinase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 739
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 83/122 (68%), Gaps = 9/122 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+S R K +YSI+ KMR+K + +++D RA+R++ DK +Q CY+ L VH
Sbjct: 248 VSGRPKHIYSIWRKMRKKGLAFDELFDVRAVRII-ADK--------LQDCYAALGAVHTK 298
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT+ MHE +E G+AAHW YKE
Sbjct: 299 YKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKDMHEDSELGVAAHWKYKE 358
Query: 402 TG 403
G
Sbjct: 359 GG 360
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN-QGTL 71
T+VA IL +V EE+FG E KL+ GV ++ + L NV +G+
Sbjct: 74 TLVAAILFPLVASKAYPRDRFEEDFGQETIKLIDGVEEMAALGHL-------NVTLEGSA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+ + P R+ A+E I+ LA+
Sbjct: 127 ASSQVDNVRRMLLAMVDDFRCVIIKLAERICNLIEVKKAPDDVRRSAAKECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERT 191
RLG+ LK E+ED F P+ ++++ L+ R+ + I V + +
Sbjct: 187 RLGIGQLKWEIEDYAFRYQHPETYQQIAKQLSE-----RRIVREQYIQDFVDDLTNEMQG 241
Query: 192 ASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 225
+S + + +H+ S+ + + + + FD L D R
Sbjct: 242 SSINAEVSGRPKHIYSIWRKMRKKGLAFDELFDVR 276
>gi|194017102|ref|ZP_03055714.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Bacillus pumilus
ATCC 7061]
gi|194010970|gb|EDW20540.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Bacillus pumilus
ATCC 7061]
Length = 736
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 99/170 (58%), Gaps = 12/170 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIKAEFSGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRILVD---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTVEMHEIAEYGIAAH 343
Query: 397 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 446
W YKE +S S +E+ + S ++ + TD + SLK+
Sbjct: 344 WAYKEGK---ESAESTEEAVFQKKLSWFREILEFQNESTDAEEFMESLKI 390
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ G LHDVV+D +L ++E F +EVA LV GV++L + +
Sbjct: 70 TIAGGFLHDVVEDTDVTLQDLKEHFNEEVAMLVDGVTKLG------------KIKYKSQE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA R
Sbjct: 118 EQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISKIKWELEDTALRYLNPQQYYRI 203
>gi|157693164|ref|YP_001487626.1| GTP diphosphokinase [Bacillus pumilus SAFR-032]
gi|157681922|gb|ABV63066.1| GTP diphosphokinase [Bacillus pumilus SAFR-032]
Length = 736
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 99/170 (58%), Gaps = 12/170 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIKAEFSGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRILVD---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTVEMHEIAEYGIAAH 343
Query: 397 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 446
W YKE +S S +E+ + S ++ + TD + SLK+
Sbjct: 344 WAYKEGK---ESAESTEEAVFQKKLSWFREILEFQNESTDAEEFMESLKI 390
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ G LHDVV+D +L ++E F +EVA LV GV++L + +
Sbjct: 70 TIAGGFLHDVVEDTDVTLQDLKEHFNEEVAMLVDGVTKLG------------KIKYKSQE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA R
Sbjct: 118 EQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISKIKWELEDTALRYLNPQQYYRI 203
>gi|345869729|ref|ZP_08821685.1| (p)ppGpp synthetase I, SpoT/RelA [Thiorhodococcus drewsii AZ1]
gi|343922591|gb|EGV33290.1| (p)ppGpp synthetase I, SpoT/RelA [Thiorhodococcus drewsii AZ1]
Length = 738
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ R K +YSI+ KMRRK V I +++D RA+R++V + CY+ L
Sbjct: 249 GIKAEITGRPKHIYSIWKKMRRKGVDIAEIFDLRAVRIMV---------ETVADCYAALG 299
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW I EFDDYI PK + Y+SLHTAV GP+ +LEVQIRT +MH ++E G+AAH
Sbjct: 300 LVHGLWRHIPKEFDDYIATPKGNMYRSLHTAVIGPEDKSLEVQIRTYEMHRHSEFGVAAH 359
Query: 397 WLYKE 401
W YKE
Sbjct: 360 WAYKE 364
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 88/147 (59%), Gaps = 6/147 (4%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+VA +L+ ++ + ++E+FG VA +V ++R+ I + I +
Sbjct: 79 ETLVAALLNGCLNQTGLTEAQMQEQFGHNVAHMVGDLARIGQIANV----NAIIAAKDQP 134
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
HEE +LR +LLG+ +D RVVL+ LA+R+H MR I L P + +A++T ++ LA+
Sbjct: 135 QHEE--NLRRLLLGIAEDVRVVLVVLAERVHLMRAIKDLEPERRTKIARDTQRVYAPLAN 192
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+W +K ELEDL LQP ++++
Sbjct: 193 RLGIWQIKWELEDLSLRYLQPDEYKRI 219
>gi|422809604|ref|ZP_16858015.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Listeria
monocytogenes FSL J1-208]
gi|378753218|gb|EHY63803.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Listeria
monocytogenes FSL J1-208]
Length = 738
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 397 WLYKETGNKLQSISSMD 413
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 86/146 (58%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV +G LHDVV+D +L +EE FG EVA LV GV++L I + H
Sbjct: 70 TVASGFLHDVVEDTPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE--------- 118
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA R
Sbjct: 119 -QQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISRVKWELEDTALRYLNPQQYYRI 203
>gi|14325225|dbj|BAB60670.1| Rel [Listeria monocytogenes]
Length = 738
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 397 WLYKETGNKLQSISSMD 413
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 86/146 (58%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV +G LHDVV+D +L +EE FG EVA LV GV++L I + H
Sbjct: 70 TVASGFLHDVVEDTPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE--------- 118
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA R
Sbjct: 119 -QQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISRVKWELEDTALRYLNPQQYYRI 203
>gi|422013210|ref|ZP_16359838.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Providencia
burhodogranariea DSM 19968]
gi|414103418|gb|EKT64993.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Providencia
burhodogranariea DSM 19968]
Length = 745
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L I
Sbjct: 245 IQAEIYGRPKHIYSIWRKMKKKALAFDELFDVRAVRIVV---------ERLQDCYAALGI 295
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH + + EFDDY+ NPKP+GYQS+HT V GP+G LE+QIRT++MHE AE G+AAHW
Sbjct: 296 VHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEIQIRTRQMHEDAELGVAAHW 355
Query: 398 LYKE 401
YKE
Sbjct: 356 KYKE 359
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ ++ A +L +V++ S+ ++FG+ + +LV GV + I QL + T
Sbjct: 73 IGSLQAALLFPLVEENQLDEQSVIDDFGNSIHELVKGVLEMDAIRQL----------KAT 122
Query: 71 LGHE----EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 126
E + +++R MLL MV+D R V+IKLA+R+ ++R + A+E I+
Sbjct: 123 QSSETSSVQVDNIRRMLLSMVEDFRCVVIKLAERIAHLREVKDGTEDDRVLAAKECSNIY 182
Query: 127 CSLASRLGLWALKAELEDLCFAVLQPQIFRKM 158
LA+RLG+ LK ELED CF L P ++K+
Sbjct: 183 APLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|223044113|ref|ZP_03614152.1| RelA/SpoT family protein [Staphylococcus capitis SK14]
gi|417907908|ref|ZP_12551675.1| GTP diphosphokinase [Staphylococcus capitis VCU116]
gi|222442507|gb|EEE48613.1| RelA/SpoT family protein [Staphylococcus capitis SK14]
gi|341594995|gb|EGS37673.1| GTP diphosphokinase [Staphylococcus capitis VCU116]
Length = 729
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 87/145 (60%), Gaps = 19/145 (13%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM ++ +++D A+R++V +I CY++L +VH L
Sbjct: 238 INGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRIIVN---------SINDCYAILGLVHTL 288
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAAHWAYKE 348
Query: 402 TG----------NKLQSISSMDESD 416
NKL + + E+D
Sbjct: 349 GKTVNEKTQDFQNKLNWLKELAETD 373
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + +++ F +EVA++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTPYTFEDVKDMFNEEVARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQVRISKETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQP-QIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDSVQYFR 202
>gi|46907751|ref|YP_014140.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 4b str.
F2365]
gi|226224124|ref|YP_002758231.1| (p)ppGpp synthetase [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254824418|ref|ZP_05229419.1| GTP pyrophosphokinase [Listeria monocytogenes FSL J1-194]
gi|254852146|ref|ZP_05241494.1| GTP pyrophosphokinase [Listeria monocytogenes FSL R2-503]
gi|254931458|ref|ZP_05264817.1| GTP pyrophosphokinase [Listeria monocytogenes HPB2262]
gi|300764810|ref|ZP_07074800.1| GTP pyrophosphokinase [Listeria monocytogenes FSL N1-017]
gi|386732261|ref|YP_006205757.1| (p)ppGpp synthetase [Listeria monocytogenes 07PF0776]
gi|404281082|ref|YP_006681980.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2755]
gi|404286945|ref|YP_006693531.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749867|ref|YP_006673333.1| GTP pyrophosphokinase [Listeria monocytogenes ATCC 19117]
gi|405752743|ref|YP_006676208.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2378]
gi|405755681|ref|YP_006679145.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2540]
gi|406704296|ref|YP_006754650.1| GTP pyrophosphokinase [Listeria monocytogenes L312]
gi|417316063|ref|ZP_12102721.1| (p)ppGpp synthetase [Listeria monocytogenes J1816]
gi|424714398|ref|YP_007015113.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 4b str.
LL195]
gi|424823285|ref|ZP_18248298.1| GTP pyrophosphokinase [Listeria monocytogenes str. Scott A]
gi|46881020|gb|AAT04317.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 4b str.
F2365]
gi|225876586|emb|CAS05295.1| Putative (p)ppGpp synthetase [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|258605450|gb|EEW18058.1| GTP pyrophosphokinase [Listeria monocytogenes FSL R2-503]
gi|293583010|gb|EFF95042.1| GTP pyrophosphokinase [Listeria monocytogenes HPB2262]
gi|293593653|gb|EFG01414.1| GTP pyrophosphokinase [Listeria monocytogenes FSL J1-194]
gi|300514486|gb|EFK41543.1| GTP pyrophosphokinase [Listeria monocytogenes FSL N1-017]
gi|328465560|gb|EGF36789.1| (p)ppGpp synthetase [Listeria monocytogenes J1816]
gi|332311965|gb|EGJ25060.1| GTP pyrophosphokinase [Listeria monocytogenes str. Scott A]
gi|384391019|gb|AFH80089.1| (p)ppGpp synthetase [Listeria monocytogenes 07PF0776]
gi|404219067|emb|CBY70431.1| GTP pyrophosphokinase [Listeria monocytogenes ATCC 19117]
gi|404221943|emb|CBY73306.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2378]
gi|404224881|emb|CBY76243.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2540]
gi|404227717|emb|CBY49122.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2755]
gi|404245874|emb|CBY04099.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361326|emb|CBY67599.1| GTP pyrophosphokinase [Listeria monocytogenes L312]
gi|424013582|emb|CCO64122.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 4b str.
LL195]
Length = 738
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 397 WLYKETGNKLQSISSMD 413
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 86/146 (58%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV +G LHDVV+D +L +EE FG EVA LV GV++L I + H
Sbjct: 70 TVASGFLHDVVEDTPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE--------- 118
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA R
Sbjct: 119 -QQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISRVKWELEDTALRYLNPQQYYRI 203
>gi|417645315|ref|ZP_12295229.1| GTP diphosphokinase [Staphylococcus warneri VCU121]
gi|445059472|ref|YP_007384876.1| GTP pyrophosphokinase [Staphylococcus warneri SG1]
gi|330683916|gb|EGG95684.1| GTP diphosphokinase [Staphylococcus epidermidis VCU121]
gi|443425529|gb|AGC90432.1| GTP pyrophosphokinase [Staphylococcus warneri SG1]
Length = 729
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 89/151 (58%), Gaps = 19/151 (12%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM ++ +++D A+R++V I CY++L +VH L
Sbjct: 238 INGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRIIVN---------TINDCYAILGLVHTL 288
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAAHWAYKE 348
Query: 402 TG----------NKLQSISSMDESDIEASSS 422
NKL + + E+D +S +
Sbjct: 349 GKTVNEKTQDFQNKLNWLKDLAETDHTSSDA 379
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 84/145 (57%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++ F +EVA++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTAYTFDDVKNMFNEEVARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISKETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQP-QIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDSVQYFR 202
>gi|310658609|ref|YP_003936330.1| GTP pyrophosphokinase [[Clostridium] sticklandii]
gi|308825387|emb|CBH21425.1| GTP pyrophosphokinase [[Clostridium] sticklandii]
Length = 729
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 95/168 (56%), Gaps = 16/168 (9%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E + R K YSI+ KM+ + ++YD A+R++V +++ CY ++
Sbjct: 226 NIEGDIKGRAKHFYSIYRKMKYQSKSFEEIYDLMAVRILVD---------SLKDCYGVVG 276
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH +W P+ G F DYI PKP+ YQSLHT V GPDG LE+QIRT++MH AE G+AAH
Sbjct: 277 IVHTIWKPMPGRFKDYIAMPKPNMYQSLHTTVLGPDGEPLEIQIRTKEMHRTAEFGIAAH 336
Query: 397 WLYKETGNKLQSISSMDE------SDIEASSSLSKDTDDHNPLDTDLF 438
W YKE G + S MD+ +E +S T+ L DLF
Sbjct: 337 WKYKE-GKIDPNESDMDKKLSWLRQMMEWQKDVSDPTEFMESLKIDLF 383
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 83/143 (58%), Gaps = 12/143 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V T+ AG++HDVV+D S IE FG EVA+LV GV++L I +
Sbjct: 61 VFTIAAGLMHDVVEDTEVSFSDIERLFGTEVAELVDGVTKLGKIEYKSKEET-------- 112
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A +LR M + M D RV+LIKLADRLHNMRT+ + KA+ A ET+ I+ +A
Sbjct: 113 ----QAENLRKMFMAMGKDIRVILIKLADRLHNMRTLKYMSEEKAKEKATETIEIYAPIA 168
Query: 131 SRLGLWALKAELEDLCFAVLQPQ 153
RLG+ +K E+ED+ L P+
Sbjct: 169 HRLGISRVKWEMEDIALRYLDPE 191
>gi|239637561|ref|ZP_04678533.1| GTP pyrophosphokinase [Staphylococcus warneri L37603]
gi|239596779|gb|EEQ79304.1| GTP pyrophosphokinase [Staphylococcus warneri L37603]
Length = 729
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 89/151 (58%), Gaps = 19/151 (12%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM ++ +++D A+R++V I CY++L +VH L
Sbjct: 238 INGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRIIVN---------TINDCYAILGLVHTL 288
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAAHWAYKE 348
Query: 402 TG----------NKLQSISSMDESDIEASSS 422
NKL + + E+D +S +
Sbjct: 349 GKTVNEKTQDFQNKLNWLKDLAETDHTSSDA 379
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 84/145 (57%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++ F +EVA++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTAYTFDDVKNMFNEEVARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISKETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQP-QIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDSVQYFR 202
>gi|403070228|ref|ZP_10911560.1| GTP pyrophosphokinase [Oceanobacillus sp. Ndiop]
Length = 733
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E +S R K LYSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIEAEMSGRPKHLYSIYQKMVLQNKQFNEIYDLLAVRIIVD---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PK + YQSLHT V GP G LEVQIRT++MHE AE+G+AAH
Sbjct: 284 IIHTNWKPMPGRFKDYIAMPKQNLYQSLHTTVIGPKGDPLEVQIRTKEMHEIAEYGIAAH 343
Query: 397 WLYKE 401
W YKE
Sbjct: 344 WAYKE 348
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 85/147 (57%), Gaps = 12/147 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ G LHDVV+D +L +E+EF E+A LV GV++L I R +
Sbjct: 69 ETIAGGFLHDVVEDTDVTLEKMEQEFNHEIAMLVDGVTKLGKI--------RYETKEA-- 118
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
++A + R M + M D RV+LIKLADRLHNMRT+ L K R ++ ETL I+ LA
Sbjct: 119 --QQAENHRKMFVAMAKDIRVILIKLADRLHNMRTLKHLSSEKQRRISNETLEIFAPLAH 176
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELED L PQ + ++
Sbjct: 177 RLGISTIKWELEDTALRYLNPQQYYRI 203
>gi|357403760|ref|YP_004915684.1| GTP pyrophosphokinase [Methylomicrobium alcaliphilum 20Z]
gi|351716425|emb|CCE22085.1| GTP pyrophosphokinase [Methylomicrobium alcaliphilum 20Z]
Length = 706
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K +YSI++KMRRK + I +YD A+RV+V ++ CYS+L
Sbjct: 227 GITAKVYGRPKHIYSIWNKMRRKQLAIDDLYDLLAVRVIVD---------SLTACYSVLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+ H W I EFDDYI NPK +GYQSLHT + G+ +E+QIRT+ MHE+AE G+AAH
Sbjct: 278 LAHSYWKYIPKEFDDYIANPKENGYQSLHTVIVDHKGNRIEIQIRTRSMHEFAELGVAAH 337
Query: 397 WLYKE 401
W YKE
Sbjct: 338 WRYKE 342
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 83/153 (54%), Gaps = 12/153 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+++A +L D + I+++FG+ VA LV V+ ++N L V L
Sbjct: 60 SILAALLSDSRLAGRLAAAEIKQQFGETVAGLVKDVN---WLNNL-------RVYSPELT 109
Query: 73 HEEAND--LRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
HE + LR MLL M D R VLIKLA R+ +R I A P R +AQETL ++ LA
Sbjct: 110 HEPNQNETLRRMLLAMTHDVRSVLIKLAYRIERLRGISAEEPGVRRFIAQETLDVYAPLA 169
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
+RLG+ K ELEDL F L+P ++++ LA
Sbjct: 170 NRLGVSQFKWELEDLAFRYLEPDNYKRIAESLA 202
>gi|253317214|ref|ZP_04840427.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
Length = 729
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDNVQYFR 202
>gi|256828245|ref|YP_003156973.1| (p)ppGpp synthetase I SpoT/RelA [Desulfomicrobium baculatum DSM
4028]
gi|256577421|gb|ACU88557.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfomicrobium baculatum DSM
4028]
Length = 715
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 99/166 (59%), Gaps = 22/166 (13%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+ R+K YSI+ KM+++ + + +++D A RV+V + ++ CY++L +VH L
Sbjct: 233 VKGRIKHTYSIYHKMKQRGLTLDQIFDMIAFRVIVNN---------LRECYTVLGLVHSL 283
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G+F DYI PK + YQSLH+ V GP+G +E+QIRT++MH+ AE+G+AAHW YKE
Sbjct: 284 WKPVPGKFKDYISMPKANMYQSLHSTVIGPEGERIEIQIRTEEMHQLAENGVAAHWSYKE 343
Query: 402 TGNKLQSISSMDESD--------IEASSSLSKDTDDHNPLDTDLFQ 439
G+K E+D ++ L D + L DLFQ
Sbjct: 344 HGSK-----KAQEADRFSWLRQILDWQGDLKDSRDFMSTLSLDLFQ 384
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 90/146 (61%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG+LHD V+D S+ I E FG EV +V GV+++S +N +
Sbjct: 65 TIVAGLLHDTVEDTEVSIPQIVELFGPEVGAIVEGVTKISKMNFESKEQ----------- 113
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A ++R M+L M DD RV+L+KLADRLHN+ T+ K RA+AQETL I+ LA+R
Sbjct: 114 -AQAENIRKMILAMADDIRVILVKLADRLHNISTLEFQKEYKQRAIAQETLGIYAPLANR 172
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LGL+ +K +LE+ ++P ++ ++
Sbjct: 173 LGLYRIKVQLENYGLRYMKPDVYAQI 198
>gi|16803563|ref|NP_465048.1| hypothetical protein lmo1523 [Listeria monocytogenes EGD-e]
gi|47097020|ref|ZP_00234593.1| GTP pyrophosphokinase [Listeria monocytogenes str. 1/2a F6854]
gi|254828243|ref|ZP_05232930.1| relA [Listeria monocytogenes FSL N3-165]
gi|254912197|ref|ZP_05262209.1| GTP pyrophosphokinase [Listeria monocytogenes J2818]
gi|254936525|ref|ZP_05268222.1| relA [Listeria monocytogenes F6900]
gi|284801913|ref|YP_003413778.1| hypothetical protein LM5578_1668 [Listeria monocytogenes 08-5578]
gi|284995055|ref|YP_003416823.1| hypothetical protein LM5923_1620 [Listeria monocytogenes 08-5923]
gi|386043834|ref|YP_005962639.1| GTP pyrophosphokinase [Listeria monocytogenes 10403S]
gi|386047175|ref|YP_005965507.1| relA [Listeria monocytogenes J0161]
gi|386050499|ref|YP_005968490.1| GTP pyrophosphokinase [Listeria monocytogenes FSL R2-561]
gi|386053776|ref|YP_005971334.1| GTP pyrophosphokinase [Listeria monocytogenes Finland 1998]
gi|404284015|ref|YP_006684912.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2372]
gi|404410825|ref|YP_006696413.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC5850]
gi|405758571|ref|YP_006687847.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2479]
gi|16410952|emb|CAC99601.1| relA [Listeria monocytogenes EGD-e]
gi|47014602|gb|EAL05562.1| GTP pyrophosphokinase [Listeria monocytogenes str. 1/2a F6854]
gi|258600631|gb|EEW13956.1| relA [Listeria monocytogenes FSL N3-165]
gi|258609119|gb|EEW21727.1| relA [Listeria monocytogenes F6900]
gi|284057475|gb|ADB68416.1| hypothetical protein LM5578_1668 [Listeria monocytogenes 08-5578]
gi|284060522|gb|ADB71461.1| hypothetical protein LM5923_1620 [Listeria monocytogenes 08-5923]
gi|293590170|gb|EFF98504.1| GTP pyrophosphokinase [Listeria monocytogenes J2818]
gi|345534166|gb|AEO03607.1| relA [Listeria monocytogenes J0161]
gi|345537068|gb|AEO06508.1| GTP pyrophosphokinase [Listeria monocytogenes 10403S]
gi|346424345|gb|AEO25870.1| GTP pyrophosphokinase [Listeria monocytogenes FSL R2-561]
gi|346646427|gb|AEO39052.1| GTP pyrophosphokinase [Listeria monocytogenes Finland 1998]
gi|404230651|emb|CBY52055.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC5850]
gi|404233517|emb|CBY54920.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2372]
gi|404236453|emb|CBY57855.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2479]
gi|441471216|emb|CCQ20971.1| GTP pyrophosphokinase [Listeria monocytogenes]
gi|441474345|emb|CCQ24099.1| GTP pyrophosphokinase [Listeria monocytogenes N53-1]
Length = 738
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 397 WLYKETGNKLQSISSMD 413
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 86/146 (58%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV +G LHDVV+D +L +EE FG EVA LV GV++L I + H
Sbjct: 70 TVASGFLHDVVEDTPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE--------- 118
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA R
Sbjct: 119 -QQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISRVKWELEDTALRYLNPQQYYRI 203
>gi|427706762|ref|YP_007049139.1| (p)ppGpp synthetase I SpoT/RelA [Nostoc sp. PCC 7107]
gi|427359267|gb|AFY41989.1| (p)ppGpp synthetase I, SpoT/RelA [Nostoc sp. PCC 7107]
Length = 756
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 90/160 (56%), Gaps = 12/160 (7%)
Query: 258 VACEEALEKELLISTSYIPGMEV---TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRV 314
A EE L K I +P + +S R K LYSI+ KM+R+ H++YD ALR+
Sbjct: 227 TAREEKLAKATEILRERLPHAGIHCLDISGRPKHLYSIYQKMQRQQKEFHEIYDLAALRI 286
Query: 315 VVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGS 374
+V + CY L +VH + PI G F DYI PKP+ YQSLHT V G G
Sbjct: 287 IVQTN---------EECYRALAVVHDAFRPIPGRFKDYIGLPKPNRYQSLHTGVIGLTGR 337
Query: 375 ALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 414
LE+QIRT +MH AE+G+AAHW YKETG ++ DE
Sbjct: 338 PLEIQIRTLEMHHIAEYGIAAHWKYKETGGSNSQFTASDE 377
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 93/156 (59%), Gaps = 12/156 (7%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D ++ IEE FG EV LV GV++LS +IN T
Sbjct: 86 IAAGFLHDVVEDTDVTIEEIEELFGSEVRLLVEGVTKLS----------KINFKSKT--E 133
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M D RV+++KLADRLHNMRT+ + R AQET I+ LA+RL
Sbjct: 134 SQAENFRRMFLAMAQDIRVIVVKLADRLHNMRTLQYMSEDSRRRSAQETRDIFAPLANRL 193
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
G+W +K ELEDL F L+P+ FR+M+ ++ + R
Sbjct: 194 GIWHIKWELEDLAFKYLEPEAFRQMQQHVSEKRTAR 229
Score = 39.3 bits (90), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 599 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 658
+ K LR +L W+ L+ S K N D V V P G+++ L G
Sbjct: 376 DEKFTWLRQLLEWQSDLKDAQEYLDSV---KDNLFEDDVY------VFTPKGDVVSLNPG 426
Query: 659 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
ST+ D A + VG VNG++V +T L +GDIVE+
Sbjct: 427 STSIDFAYRIHTEVGNHCSGSKVNGRIVPLSTRLHNGDIVEI 468
>gi|426403554|ref|YP_007022525.1| GTP pyrophosphokinase [Bdellovibrio bacteriovorus str. Tiberius]
gi|425860222|gb|AFY01258.1| GTP pyrophosphokinase [Bdellovibrio bacteriovorus str. Tiberius]
Length = 738
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 98/162 (60%), Gaps = 14/162 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+DT+ G+LHD V+D +L I EFGD +A LV GV++ I Q+ ++
Sbjct: 77 LDTIATGLLHDTVEDTAATLEDIRTEFGDVIAHLVDGVTK---IGQMKFKN--------- 124
Query: 71 LGHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
HE + ++R M++ M D RVVL+KLADRLHNMRT+ +P K +A ETL I+C L
Sbjct: 125 -SHEKQGENIRKMIVAMGKDVRVVLVKLADRLHNMRTLNFMPFEKQERIALETLEIYCPL 183
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
A R+G+ ALK ELEDLCF +P ++ ++ + S +NR
Sbjct: 184 AGRMGISALKIELEDLCFRYYRPDMYYELVQQIKKTESEQNR 225
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 96/173 (55%), Gaps = 25/173 (14%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G + R K L+SI+ KM+ +++ +VYD A RV+V ++ CY+ L
Sbjct: 242 GFRYEVYGRSKHLWSIYRKMQSRNIDYDQVYDVLAFRVLV---------ESVAECYAALG 292
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW PI G F D+I PK + YQSLHT V GP G +E+QIRT +MH AE G+AAH
Sbjct: 293 LVHSLWKPIPGRFKDFIAMPKANNYQSLHTTVMGPGGERIEIQIRTSEMHLVAEKGIAAH 352
Query: 397 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDH----NP------LDTDLFQ 439
W YKE G +D+SD++ ++ L H NP + TDLF+
Sbjct: 353 WKYKERG------KMVDDSDLQQANWLRDLVSWHQNVRNPDEFLDTVKTDLFE 399
>gi|404413602|ref|YP_006699189.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC7179]
gi|404239301|emb|CBY60702.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC7179]
Length = 738
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 397 WLYKETGNKLQSISSMD 413
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 86/146 (58%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV +G LHDVV+D +L +EE FG EVA LV GV++L I + H
Sbjct: 70 TVASGFLHDVVEDTPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE--------- 118
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA R
Sbjct: 119 -QQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISRVKWELEDTALRYLNPQQYYRI 203
>gi|418895396|ref|ZP_13449491.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1057]
gi|377695202|gb|EHT19566.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1057]
Length = 729
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDNVQYFR 202
>gi|303257516|ref|ZP_07343528.1| GTP diphosphokinase [Burkholderiales bacterium 1_1_47]
gi|331000219|ref|ZP_08323903.1| RelA/SpoT family protein [Parasutterella excrementihominis YIT
11859]
gi|302859486|gb|EFL82565.1| GTP diphosphokinase [Burkholderiales bacterium 1_1_47]
gi|329572385|gb|EGG54038.1| RelA/SpoT family protein [Parasutterella excrementihominis YIT
11859]
Length = 703
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 37/223 (16%)
Query: 221 LSDRRKRTKFLHDLAKSSEAQKKAKV--VQDAGIALTSLVACEEALEKELLISTSYIPGM 278
LS R + H +A + E ++ +V +Q+A + +L+A G+
Sbjct: 179 LSLRFTEPEVFHTIANNLEETREERVASIQEAVRRIQALLASR---------------GI 223
Query: 279 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 338
+ ++S R K +YSI+ KM +K++ +++D RA+R++V +++ CY L ++
Sbjct: 224 QASVSGRPKHIYSIWKKMCKKNLKFEQLFDVRAIRIIVD---------SVEKCYETLSLI 274
Query: 339 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 398
+ + EFDDYI PKP+GYQSLHT + G G LE+QIRT+ MHE+AE G+AAHW
Sbjct: 275 QESFEVLSKEFDDYIAKPKPNGYQSLHTVIVGSRGKPLEIQIRTRAMHEFAELGVAAHWR 334
Query: 399 YKETGNKLQSISSMD-----------ESDIEASSSLSKDTDDH 430
YKE + D +SD++A+ + D+H
Sbjct: 335 YKEGSKRKAGEHEEDRVAWLRQMLAWKSDVQAAPTPEAAKDEH 377
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 72/131 (54%), Gaps = 7/131 (5%)
Query: 33 IEEEFGDEVAKLVAGVSRLSYINQLLR-RHRRINVNQGTLGHEEANDLRVMLLGMVDDPR 91
+ + FG +V +LVA + + +++ R R ++Q + + +R +LL + D R
Sbjct: 72 LTKHFGRQVCELVANLKVVIDVSEKARSREGEARISQ------QPDAVRRLLLALCTDLR 125
Query: 92 VVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 151
VVL++LA RL +R A A+ ETL ++ LA+RLG+W +K ELEDL +
Sbjct: 126 VVLLRLASRLQTLRYFAATKAPGAKEYGAETLALYAPLANRLGIWQMKWELEDLSLRFTE 185
Query: 152 PQIFRKMRADL 162
P++F + +L
Sbjct: 186 PEVFHTIANNL 196
>gi|217964330|ref|YP_002350008.1| GTP pyrophosphokinase [Listeria monocytogenes HCC23]
gi|290893882|ref|ZP_06556860.1| GTP pyrophosphokinase [Listeria monocytogenes FSL J2-071]
gi|386008294|ref|YP_005926572.1| GTP pyrophosphokinase [Listeria monocytogenes L99]
gi|386026896|ref|YP_005947672.1| putative (p)ppGpp synthetase [Listeria monocytogenes M7]
gi|404407961|ref|YP_006690676.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2376]
gi|217333600|gb|ACK39394.1| GTP pyrophosphokinase (ATP:GTP 3-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Listeria
monocytogenes HCC23]
gi|290556599|gb|EFD90135.1| GTP pyrophosphokinase [Listeria monocytogenes FSL J2-071]
gi|307571104|emb|CAR84283.1| GTP pyrophosphokinase [Listeria monocytogenes L99]
gi|336023477|gb|AEH92614.1| putative (p)ppGpp synthetase [Listeria monocytogenes M7]
gi|404242110|emb|CBY63510.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2376]
Length = 738
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 397 WLYKETGNKLQSISSMD 413
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 86/146 (58%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV +G LHDVV+D +L +EE FG EVA LV GV++L I + H
Sbjct: 70 TVASGFLHDVVEDTPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE--------- 118
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA R
Sbjct: 119 -QQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISRVKWELEDTALRYLNPQQYYRI 203
>gi|47094426|ref|ZP_00232112.1| GTP pyrophosphokinase [Listeria monocytogenes str. 4b H7858]
gi|47017201|gb|EAL08048.1| GTP pyrophosphokinase [Listeria monocytogenes str. 4b H7858]
Length = 724
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 219 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 269
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 270 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 329
Query: 397 WLYKETGNKLQSISSMD 413
W YKE G + S +S D
Sbjct: 330 WAYKE-GKVVNSKTSFD 345
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 86/146 (58%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV +G LHDVV+D +L +EE FG EVA LV GV++L I + H
Sbjct: 56 TVASGFLHDVVEDTPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE--------- 104
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA R
Sbjct: 105 -QQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHR 163
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 164 LGISRVKWELEDTALRYLNPQQYYRI 189
>gi|422416024|ref|ZP_16492981.1| GTP diphosphokinase [Listeria innocua FSL J1-023]
gi|423100605|ref|ZP_17088312.1| GTP diphosphokinase [Listeria innocua ATCC 33091]
gi|313623673|gb|EFR93827.1| GTP diphosphokinase [Listeria innocua FSL J1-023]
gi|370792829|gb|EHN60672.1| GTP diphosphokinase [Listeria innocua ATCC 33091]
Length = 738
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 397 WLYKETGNKLQSISSMD 413
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 87/146 (59%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV +G LHDVV+D +L +EE FG+EVA LV GV++L I + H
Sbjct: 70 TVASGFLHDVVEDTPVTLADLEEVFGEEVAMLVDGVTKLGKIK--YKSHEE--------- 118
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA R
Sbjct: 119 -QQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISRVKWELEDTALRYLNPQQYYRI 203
>gi|373495922|ref|ZP_09586472.1| RelA/SpoT family protein [Fusobacterium sp. 12_1B]
gi|404369252|ref|ZP_10974596.1| RelA/SpoT family protein [Fusobacterium ulcerans ATCC 49185]
gi|313688538|gb|EFS25373.1| RelA/SpoT family protein [Fusobacterium ulcerans ATCC 49185]
gi|371966563|gb|EHO84049.1| RelA/SpoT family protein [Fusobacterium sp. 12_1B]
Length = 726
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 100/162 (61%), Gaps = 14/162 (8%)
Query: 8 KRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN 67
K DT+VAGILHD+V+D +L I+ FGD VA LV GV++L ++
Sbjct: 60 KMDTDTIVAGILHDIVEDTLITLADIKYNFGDTVATLVDGVTKLK------------SLP 107
Query: 68 QGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWC 127
GT +E ++R M+L M + RV++IKL+DRLHNMRT+ + P K A++QETL I+
Sbjct: 108 NGTKKQDE--NIRKMILAMAQNLRVIIIKLSDRLHNMRTLKYMKPEKQIAISQETLDIYA 165
Query: 128 SLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
LA RLG+ +K ELEDLC L+P+ + +++ + S + R
Sbjct: 166 PLAHRLGIAKIKWELEDLCLRYLKPEEYEHIKSLIDSKRNER 207
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 71/125 (56%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K YSI+ KM K +YD +R++V D G CY+ L
Sbjct: 226 GIKGNVKGRFKHFYSIYKKMYEKGKEFDDIYDLMGVRIIV-DTEGE--------CYNTLG 276
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H + P+ G F DYI PK + YQS+HT + GP G +E+QIRT+ M AE G+AAH
Sbjct: 277 VIHSHFRPVPGRFKDYIAVPKSNNYQSIHTTIVGPLGKFIEIQIRTEDMDRVAEEGIAAH 336
Query: 397 WLYKE 401
W YKE
Sbjct: 337 WSYKE 341
>gi|16800626|ref|NP_470894.1| hypothetical protein lin1558 [Listeria innocua Clip11262]
gi|422413014|ref|ZP_16489973.1| GTP diphosphokinase [Listeria innocua FSL S4-378]
gi|16414045|emb|CAC96789.1| relA [Listeria innocua Clip11262]
gi|313618809|gb|EFR90701.1| GTP diphosphokinase [Listeria innocua FSL S4-378]
Length = 738
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 397 WLYKETGNKLQSISSMD 413
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 87/146 (59%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV +G LHDVV+D +L +EE FG+EVA LV GV++L I + H
Sbjct: 70 TVASGFLHDVVEDTPVTLADLEEVFGEEVAMLVDGVTKLGKIK--YKSHEE--------- 118
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA R
Sbjct: 119 -QQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISRVKWELEDTALRYLNPQQYYRI 203
>gi|379014840|ref|YP_005291076.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VC40]
gi|374363537|gb|AEZ37642.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VC40]
Length = 729
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDNVQYFR 202
>gi|15927214|ref|NP_374747.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus N315]
gi|21283313|ref|NP_646401.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus MW2]
gi|148268114|ref|YP_001247057.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus JH9]
gi|150394182|ref|YP_001316857.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus JH1]
gi|269203259|ref|YP_003282528.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ED98]
gi|296275919|ref|ZP_06858426.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus MR1]
gi|387150777|ref|YP_005742341.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Staphylococcus aureus
04-02981]
gi|415692758|ref|ZP_11454678.1| RelA/SpoT family protein [Staphylococcus aureus subsp. aureus
CGS03]
gi|417651056|ref|ZP_12300819.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21172]
gi|417894333|ref|ZP_12538352.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21201]
gi|417897939|ref|ZP_12541865.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21259]
gi|418314427|ref|ZP_12925901.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21334]
gi|418316727|ref|ZP_12928162.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21340]
gi|418567175|ref|ZP_13131540.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21272]
gi|418640299|ref|ZP_13202531.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-3]
gi|418652842|ref|ZP_13214805.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-99]
gi|418661102|ref|ZP_13222704.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-122]
gi|418878550|ref|ZP_13432785.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1165]
gi|418881316|ref|ZP_13435533.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1213]
gi|418886899|ref|ZP_13441046.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1150]
gi|418914735|ref|ZP_13468705.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418919564|ref|ZP_13473509.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIGC348]
gi|418931938|ref|ZP_13485773.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1750]
gi|418934602|ref|ZP_13488424.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIGC128]
gi|418988698|ref|ZP_13536370.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1835]
gi|418991562|ref|ZP_13539223.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1096]
gi|419784623|ref|ZP_14310386.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-M]
gi|443636047|ref|ZP_21120165.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21236]
gi|13701432|dbj|BAB42726.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus N315]
gi|21204753|dbj|BAB95449.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus MW2]
gi|147741183|gb|ABQ49481.1| (p)ppGpp synthetase I, SpoT/RelA [Staphylococcus aureus subsp.
aureus JH9]
gi|149946634|gb|ABR52570.1| RelA/SpoT family protein [Staphylococcus aureus subsp. aureus JH1]
gi|262075549|gb|ACY11522.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ED98]
gi|285817316|gb|ADC37803.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Staphylococcus aureus
04-02981]
gi|315129918|gb|EFT85908.1| RelA/SpoT family protein [Staphylococcus aureus subsp. aureus
CGS03]
gi|329727240|gb|EGG63696.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21172]
gi|341849441|gb|EGS90584.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21259]
gi|341852478|gb|EGS93367.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21201]
gi|365233463|gb|EHM74417.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21334]
gi|365240690|gb|EHM81457.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21340]
gi|371982879|gb|EHP00028.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21272]
gi|375014863|gb|EHS08534.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-3]
gi|375021010|gb|EHS14517.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-99]
gi|375039533|gb|EHS32458.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-122]
gi|377694672|gb|EHT19037.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1165]
gi|377713116|gb|EHT37329.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1750]
gi|377717791|gb|EHT41966.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1835]
gi|377723684|gb|EHT47809.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1096]
gi|377724401|gb|EHT48517.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1150]
gi|377731059|gb|EHT55117.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1213]
gi|377755391|gb|EHT79290.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377767243|gb|EHT91050.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIGC348]
gi|377770696|gb|EHT94457.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIGC128]
gi|383363833|gb|EID41159.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-M]
gi|443408556|gb|ELS67075.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21236]
Length = 729
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDNVQYFR 202
>gi|433444159|ref|ZP_20409169.1| GTP pyrophosphokinase [Anoxybacillus flavithermus TNO-09.006]
gi|432001807|gb|ELK22676.1| GTP pyrophosphokinase [Anoxybacillus flavithermus TNO-09.006]
Length = 732
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 GIQAEISGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRIIV---------ESIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVVGPKGEPLEVQIRTFEMHHIAEFGIAAH 343
Query: 397 WLYKE 401
W YKE
Sbjct: 344 WAYKE 348
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 84/148 (56%), Gaps = 16/148 (10%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ AG LHDVV+D + +E EFG EVA LV GV++L I
Sbjct: 70 TIAAGFLHDVVEDTHVTKEDLEREFGKEVAMLVDGVTKLGKIK--------------YKS 115
Query: 73 HEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
HEE A + R M L M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA
Sbjct: 116 HEEQQAENHRKMFLAMAQDIRVILIKLADRLHNMRTLKHLPIEKQRRIANETLEIFAPLA 175
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELED L PQ + ++
Sbjct: 176 HRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|57650515|ref|YP_186528.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus COL]
gi|88195445|ref|YP_500249.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|221141097|ref|ZP_03565590.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|284024690|ref|ZP_06379088.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 132]
gi|384550458|ref|YP_005739710.1| GTP pyrophosphokinase, (p)ppGpp synthetase I, RelA [Staphylococcus
aureus subsp. aureus JKD6159]
gi|384862233|ref|YP_005744953.1| GTP pyrophosphokinase, (p)ppGpp synthetase I, RelA [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|384870173|ref|YP_005752887.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus T0131]
gi|385781917|ref|YP_005758088.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
11819-97]
gi|387143236|ref|YP_005731629.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus TW20]
gi|387602972|ref|YP_005734493.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Staphylococcus
aureus subsp. aureus ST398]
gi|387780722|ref|YP_005755520.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus LGA251]
gi|404478985|ref|YP_006710415.1| GTP pyrophosphokinase [Staphylococcus aureus 08BA02176]
gi|415682436|ref|ZP_11447752.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CGS00]
gi|415686173|ref|ZP_11450310.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CGS01]
gi|416839675|ref|ZP_11903056.1| GTP pyrophosphokinase [Staphylococcus aureus O11]
gi|416846584|ref|ZP_11906633.1| GTP pyrophosphokinase [Staphylococcus aureus O46]
gi|417649291|ref|ZP_12299095.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21189]
gi|417653377|ref|ZP_12303108.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21193]
gi|417797567|ref|ZP_12444763.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21305]
gi|417799958|ref|ZP_12447090.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21310]
gi|417887946|ref|ZP_12532065.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21195]
gi|417896907|ref|ZP_12540850.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21235]
gi|417901229|ref|ZP_12545106.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21266]
gi|417903131|ref|ZP_12546986.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21269]
gi|418277930|ref|ZP_12892150.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21178]
gi|418285658|ref|ZP_12898326.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21209]
gi|418309946|ref|ZP_12921496.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21331]
gi|418318525|ref|ZP_12929927.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21232]
gi|418321376|ref|ZP_12932722.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus VCU006]
gi|418560386|ref|ZP_13124901.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21252]
gi|418564712|ref|ZP_13129133.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21264]
gi|418571915|ref|ZP_13136135.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21283]
gi|418574398|ref|ZP_13138567.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21333]
gi|418579557|ref|ZP_13143652.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1114]
gi|418582560|ref|ZP_13146638.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1605]
gi|418597458|ref|ZP_13160986.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21342]
gi|418597992|ref|ZP_13161506.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21343]
gi|418601540|ref|ZP_13164966.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21345]
gi|418641811|ref|ZP_13204016.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-24]
gi|418644086|ref|ZP_13206237.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-55]
gi|418648467|ref|ZP_13210511.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-88]
gi|418650678|ref|ZP_13212696.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-91]
gi|418654995|ref|ZP_13216878.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-105]
gi|418660671|ref|ZP_13222290.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-111]
gi|418872843|ref|ZP_13427169.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-125]
gi|418875573|ref|ZP_13429829.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIGC93]
gi|418892363|ref|ZP_13446476.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1176]
gi|418898269|ref|ZP_13452339.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418901138|ref|ZP_13455194.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1214]
gi|418903939|ref|ZP_13457980.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1770]
gi|418906577|ref|ZP_13460603.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418909485|ref|ZP_13463480.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG149]
gi|418917531|ref|ZP_13471490.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1267]
gi|418923315|ref|ZP_13477231.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1233]
gi|418925891|ref|ZP_13479793.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG2018]
gi|418928982|ref|ZP_13482868.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1612]
gi|418946741|ref|ZP_13499153.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-157]
gi|418953538|ref|ZP_13505527.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-189]
gi|418982639|ref|ZP_13530347.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1242]
gi|418986307|ref|ZP_13533991.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1500]
gi|419773205|ref|ZP_14299216.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus CO-23]
gi|421148486|ref|ZP_15608146.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|424785467|ref|ZP_18212270.1| GTP pyrophosphokinase [Staphylococcus aureus CN79]
gi|440707473|ref|ZP_20888172.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21282]
gi|440735083|ref|ZP_20914694.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus DSM
20231]
gi|443639864|ref|ZP_21123864.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21196]
gi|57284701|gb|AAW36795.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus COL]
gi|87203003|gb|ABD30813.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|269941119|emb|CBI49505.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus TW20]
gi|283470910|emb|CAQ50121.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Staphylococcus
aureus subsp. aureus ST398]
gi|302333307|gb|ADL23500.1| GTP pyrophosphokinase, (p)ppGpp synthetase I, RelA [Staphylococcus
aureus subsp. aureus JKD6159]
gi|302751462|gb|ADL65639.1| GTP pyrophosphokinase, (p)ppGpp synthetase I, RelA [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|315195536|gb|EFU25923.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CGS00]
gi|315198666|gb|EFU28994.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CGS01]
gi|323440813|gb|EGA98522.1| GTP pyrophosphokinase [Staphylococcus aureus O11]
gi|323442838|gb|EGB00463.1| GTP pyrophosphokinase [Staphylococcus aureus O46]
gi|329314308|gb|AEB88721.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus T0131]
gi|329728397|gb|EGG64834.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21189]
gi|329733068|gb|EGG69405.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21193]
gi|334267059|gb|EGL85529.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21305]
gi|334272490|gb|EGL90855.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21310]
gi|341840173|gb|EGS81693.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21235]
gi|341846388|gb|EGS87585.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21266]
gi|341850305|gb|EGS91429.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21269]
gi|341856975|gb|EGS97802.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21195]
gi|344177824|emb|CCC88303.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus LGA251]
gi|364522906|gb|AEW65656.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
11819-97]
gi|365169468|gb|EHM60716.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21209]
gi|365172889|gb|EHM63551.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21178]
gi|365225608|gb|EHM66851.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus VCU006]
gi|365237403|gb|EHM78249.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21331]
gi|365242988|gb|EHM83683.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21232]
gi|371971946|gb|EHO89337.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21252]
gi|371975849|gb|EHO93141.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21264]
gi|371978407|gb|EHO95656.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21283]
gi|371979125|gb|EHO96360.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21333]
gi|374394585|gb|EHQ65867.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21342]
gi|374398254|gb|EHQ69438.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21345]
gi|374400300|gb|EHQ71418.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21343]
gi|375018266|gb|EHS11846.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-24]
gi|375026380|gb|EHS19763.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-88]
gi|375026607|gb|EHS19987.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-55]
gi|375027964|gb|EHS21322.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-91]
gi|375031476|gb|EHS24756.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-111]
gi|375038457|gb|EHS31437.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-105]
gi|375366783|gb|EHS70764.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-125]
gi|375374758|gb|EHS78381.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-189]
gi|375377521|gb|EHS80983.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-157]
gi|377697584|gb|EHT21939.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1114]
gi|377702535|gb|EHT26857.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1214]
gi|377703685|gb|EHT27998.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1500]
gi|377704920|gb|EHT29229.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1242]
gi|377710970|gb|EHT35208.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1605]
gi|377730657|gb|EHT54724.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1176]
gi|377735274|gb|EHT59310.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1233]
gi|377738894|gb|EHT62903.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1612]
gi|377742954|gb|EHT66939.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1770]
gi|377744960|gb|EHT68937.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG2018]
gi|377750705|gb|EHT74643.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1267]
gi|377751862|gb|EHT75789.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG149]
gi|377761304|gb|EHT85180.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|377763482|gb|EHT87338.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377769645|gb|EHT93413.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIGC93]
gi|383973029|gb|EID89050.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus CO-23]
gi|394331629|gb|EJE57712.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|404440474|gb|AFR73667.1| GTP pyrophosphokinase [Staphylococcus aureus 08BA02176]
gi|421956877|gb|EKU09206.1| GTP pyrophosphokinase [Staphylococcus aureus CN79]
gi|436431178|gb|ELP28532.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus DSM
20231]
gi|436506229|gb|ELP42068.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21282]
gi|443406139|gb|ELS64723.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21196]
Length = 729
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDNVQYFR 202
>gi|379021418|ref|YP_005298080.1| GTP pyrophosphokinase , (p)ppGppsynthetase I [Staphylococcus aureus
subsp. aureus M013]
gi|418562634|ref|ZP_13127091.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21262]
gi|418950240|ref|ZP_13502432.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-160]
gi|359830727|gb|AEV78705.1| GTP pyrophosphokinase , (p)ppGppsynthetase I [Staphylococcus aureus
subsp. aureus M013]
gi|371973738|gb|EHO91086.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21262]
gi|375377478|gb|EHS80945.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-160]
Length = 729
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDNVQYFR 202
>gi|417889932|ref|ZP_12534011.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21200]
gi|418282064|ref|ZP_12894853.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21202]
gi|418307492|ref|ZP_12919197.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21194]
gi|418889447|ref|ZP_13443580.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1524]
gi|341855625|gb|EGS96469.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21200]
gi|365171614|gb|EHM62439.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21202]
gi|365245586|gb|EHM86210.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21194]
gi|377752955|gb|EHT76873.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1524]
Length = 729
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDNVQYFR 202
>gi|315282436|ref|ZP_07870851.1| GTP diphosphokinase [Listeria marthii FSL S4-120]
gi|313613919|gb|EFR87648.1| GTP diphosphokinase [Listeria marthii FSL S4-120]
Length = 738
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 397 WLYKETGNKLQSISSMD 413
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 86/146 (58%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV +G LHDVV+D +L +EE FG EVA LV GV++L I + H
Sbjct: 70 TVASGFLHDVVEDTPVTLADLEEVFGSEVAMLVDGVTKLGKIK--YKSHEE--------- 118
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA R
Sbjct: 119 -QQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHLPVEKQRRIANETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISRVKWELEDTALRYLNPQQYYRI 203
>gi|384864853|ref|YP_005750212.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((p)ppGpp synthetase) [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|312830020|emb|CBX34862.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((p)ppGpp synthetase) [Staphylococcus
aureus subsp. aureus ECT-R 2]
Length = 729
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDNVQYFR 202
>gi|340758948|ref|ZP_08695526.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium varium ATCC 27725]
gi|251835906|gb|EES64444.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Fusobacterium varium ATCC 27725]
Length = 726
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 100/162 (61%), Gaps = 14/162 (8%)
Query: 8 KRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVN 67
K DT+VAGILHD+V+D +L I+ FGD VA LV GV++L ++
Sbjct: 60 KMDTDTIVAGILHDIVEDTLITLADIKYNFGDTVATLVDGVTKLK------------SLP 107
Query: 68 QGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWC 127
GT +E ++R M+L M + RV++IKL+DRLHNMRT+ + P K A++QETL I+
Sbjct: 108 NGTKKQDE--NIRKMILAMAQNLRVIIIKLSDRLHNMRTLKYMKPEKQIAISQETLDIYA 165
Query: 128 SLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
LA RLG+ +K ELEDLC L+P+ + +++ + S + R
Sbjct: 166 PLAHRLGIAKIKWELEDLCLRYLKPEEYEHIKSLIDSKRNER 207
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 72/125 (57%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K YSI+ KM K +YD +R++V D G CY+ L
Sbjct: 226 GIKGNVKGRFKHFYSIYKKMYEKGKEFDDIYDLMGVRIIV-DTEGE--------CYNTLG 276
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H + P+ G F DYI PK + YQS+HT + GP G +E+QIRT++M AE G+AAH
Sbjct: 277 VIHSHFKPVPGRFKDYIAVPKSNNYQSIHTTIVGPQGKFIEIQIRTEEMDRVAEEGIAAH 336
Query: 397 WLYKE 401
W YKE
Sbjct: 337 WSYKE 341
>gi|221633684|ref|YP_002522910.1| GTP pyrophosphokinase [Thermomicrobium roseum DSM 5159]
gi|221157017|gb|ACM06144.1| GTP pyrophosphokinase [Thermomicrobium roseum DSM 5159]
Length = 720
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 100/153 (65%), Gaps = 3/153 (1%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T+ A +LHDV++D ++ + E FG VA+LV GV++L I +L + +++ + +
Sbjct: 58 ETIAAALLHDVLEDTDVTIEQLRERFGPRVARLVDGVTKLGKI-RLSPENEPVSLEREKI 116
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A LR MLL M +D VVLIKLADRLHNMRT+ LPP K R +A+ET+ I+ LA+
Sbjct: 117 --RQAESLRKMLLAMAEDVGVVLIKLADRLHNMRTLDHLPPEKQRRIARETMEIYAPLAN 174
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 164
RLG+ LKAELEDL F L+PQ + + L S
Sbjct: 175 RLGIGQLKAELEDLAFKYLEPQTYETIARALES 207
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ ++ R K + SI KMR K ++YD +RV+V ++ CY+ L
Sbjct: 231 GIRAVVTGREKHIASIARKMREKQRNFDEIYDVLGIRVIVDEQRD---------CYAALA 281
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H +W PI G+FDDYI NPK + Y+SLHTAV GP G LEVQIRT +MH AE+G+AAH
Sbjct: 282 IIHGMWHPIPGQFDDYIANPKENLYRSLHTAVIGPRGIPLEVQIRTHEMHREAEYGIAAH 341
Query: 397 WLYKE 401
W YKE
Sbjct: 342 WRYKE 346
Score = 46.2 bits (108), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 32/206 (15%)
Query: 495 QIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQIT 554
Q C+ A A ++ W PG D K L R H R +P +QI
Sbjct: 273 QRDCYAALAIIHGM----WHPIPGQFDDYIANPKENLYRS--LHTAVIGPRGIPLEVQIR 326
Query: 555 HLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQ 614
E+EY ++A + R + + P S + SI K+ R +L W ++
Sbjct: 327 THEMHREAEYG--IAAHW-----------RYKEQLKPDSGDRSIEAKIAWFRQILEWRDE 373
Query: 615 LRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMK----VGL 670
L + ++P E++ V P G+++ L +G+T D A + VG
Sbjct: 374 LLDAQEF--------VDSVKQDLLP-EMIYVFTPKGDVVELPAGATPIDFAYRIHTEVGH 424
Query: 671 EGKLVLVNGQLVLPNTELKDGDIVEV 696
+ VNGQ+V N +L++G +V++
Sbjct: 425 QCVGAKVNGQIVPLNYKLQNGQVVQI 450
>gi|436839902|ref|YP_007324280.1| GTP pyrophosphokinase [Desulfovibrio hydrothermalis AM13 = DSM
14728]
gi|432168808|emb|CCO22174.1| GTP pyrophosphokinase [Desulfovibrio hydrothermalis AM13 = DSM
14728]
Length = 737
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E T+ R K +SI KM+R+ + + +V+D A RV+V +++ CYS+L +
Sbjct: 245 IEGTIYGRTKHKFSIHKKMQRQGLNLDEVHDIIAFRVIVD---------SVKDCYSVLGL 295
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH +W PI G F DYI PK + YQSLHT V GP+G +E+QIRT++M + AE+G+AAHW
Sbjct: 296 VHSMWKPISGRFKDYISIPKANMYQSLHTTVIGPEGERIEIQIRTEEMQQVAEYGIAAHW 355
Query: 398 LYKETGNKL 406
YKETG +
Sbjct: 356 QYKETGTSV 364
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 91/143 (63%), Gaps = 12/143 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV AG+LHD V+D ++ I E FG+EVA +V GV+++S ++ +
Sbjct: 81 TVAAGLLHDTVEDTDTTIDEIVELFGEEVADIVDGVTKISMMDF------------ESKA 128
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A ++R M+L M +D RV+++KLADRLHNMRT+ K + +AQETL I+ LA+R
Sbjct: 129 IAKAENIRKMILAMAEDIRVLMVKLADRLHNMRTLDFQKSYKQQLIAQETLDIYSPLANR 188
Query: 133 LGLWALKAELEDLCFAVLQPQIF 155
LGL+ +K +LEDLC L+P ++
Sbjct: 189 LGLYMVKRDLEDLCLYYLKPDVY 211
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 32/154 (20%)
Query: 551 IQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLR 610
I+I TEE + ++A ++ K + V++++ D+ + LR ++
Sbjct: 334 IEIQIRTEEMQQVAEYGIAAHWQYKETGTSVAKQNRDA-----------ERFSWLRQIMD 382
Query: 611 WEEQLRSE----ASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAA- 665
W+ +L ASLR E V V P GEI+ L G+T D A
Sbjct: 383 WQRELEDPREFMASLRFDLFN-------------EEVYVFTPAGEIIELPDGATPVDFAY 429
Query: 666 ---MKVGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
+VG VNG+LV T LK+GD +EV
Sbjct: 430 SIHTEVGNHCTGAKVNGRLVPLTTTLKNGDTIEV 463
>gi|427428065|ref|ZP_18918107.1| GTP pyrophosphokinase [Caenispirillum salinarum AK4]
gi|425882766|gb|EKV31445.1| GTP pyrophosphokinase [Caenispirillum salinarum AK4]
Length = 725
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+EV LS R KS +SI+ KM+ KDV ++ D A RV+V P+++ CY L
Sbjct: 229 GVEVELSGREKSPFSIYKKMQMKDVAFEQLSDIMAFRVIV---------PSVEDCYRALG 279
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H + + G F DYI PKP+GYQSLHT + GP+ +EVQIRT+ MHE AE G+AAH
Sbjct: 280 VIHGAYPMVPGRFKDYISTPKPNGYQSLHTGIIGPEKHRIEVQIRTKAMHEIAELGVAAH 339
Query: 397 WLYKE 401
W YK+
Sbjct: 340 WSYKQ 344
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 89/141 (63%), Gaps = 13/141 (9%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
+++ +LHD ++D +L IE+ FG +VA+LV GV++L+ RI + +
Sbjct: 65 SIITALLHDTIEDTPATLEEIEKLFGKQVARLVDGVTKLT----------RIELTSDSA- 113
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYAL-PPAKARAVAQETLLIWCSLAS 131
++A + R +LL M +D RV+L+KLADR+HNMRT++ + P K + +A ET+ I+ LA
Sbjct: 114 -KQAENFRKLLLAMSEDIRVLLVKLADRMHNMRTLHFIKKPEKRQRIAAETMEIYAPLAE 172
Query: 132 RLGLWALKAELEDLCFAVLQP 152
R+G+ A K ELED FA L P
Sbjct: 173 RIGMDAWKMELEDRAFAELHP 193
>gi|418994361|ref|ZP_13541996.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG290]
gi|377744158|gb|EHT68136.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG290]
Length = 729
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 84/145 (57%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+ K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMLREKQIRISRETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDNVQYFR 202
>gi|418912249|ref|ZP_13466230.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG547]
gi|377722506|gb|EHT46632.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG547]
Length = 738
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDNVQYFR 202
>gi|90408289|ref|ZP_01216454.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Psychromonas sp.
CNPT3]
gi|90310590|gb|EAS38710.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Psychromonas sp.
CNPT3]
Length = 737
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 84/130 (64%), Gaps = 9/130 (6%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +YSI+ KM++K++ +++D RA+RVVV +Q CY+ L +H W
Sbjct: 250 RPKHIYSIYLKMQKKNLKFEELFDVRAIRVVV---------EKLQDCYAALGAIHTQWHH 300
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
I EFDDYI NPK +GYQS+HT V G G ++EVQIRTQKMH+ AE G+AAHW YKE
Sbjct: 301 IPSEFDDYIANPKANGYQSIHTVVLGAQGQSVEVQIRTQKMHDDAELGVAAHWKYKEGTA 360
Query: 405 KLQSISSMDE 414
+S S +E
Sbjct: 361 GGKSASGYEE 370
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 6/153 (3%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+DT+ A ++ ++D+ S + E + +AKLV G + + L +++ +N
Sbjct: 71 MDTLNAALVFPLLDNQILSPEKVHELWHKRIAKLVCGAAEMEGFRAL--QYQGLN----K 124
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ + ++LR MLL MV+D R V+IKLA+R+ +R + +A+E I+ LA
Sbjct: 125 ISASQVDNLRHMLLAMVEDVRAVVIKLAERICYLRQVKNASEETKVLLAREVTSIYAPLA 184
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
+RLG+ LK ELEDL F LQP I++K+ LA
Sbjct: 185 NRLGIGQLKWELEDLAFRYLQPTIYKKIAKQLA 217
>gi|15924624|ref|NP_372158.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus Mu50]
gi|156979952|ref|YP_001442211.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus Mu3]
gi|255006419|ref|ZP_05145020.2| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|14247406|dbj|BAB57796.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus Mu50]
gi|156722087|dbj|BAF78504.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus Mu3]
Length = 729
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 84/145 (57%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHH 177
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDNVQYFR 202
>gi|262051284|ref|ZP_06023508.1| GTP pyrophosphokinase [Staphylococcus aureus 930918-3]
gi|259160921|gb|EEW45941.1| GTP pyrophosphokinase [Staphylococcus aureus 930918-3]
Length = 729
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V G+
Sbjct: 70 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYGSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDNVQYFR 202
>gi|212638570|ref|YP_002315090.1| GTP pyrophosphokinase [Anoxybacillus flavithermus WK1]
gi|212560050|gb|ACJ33105.1| GTP pyrophosphokinase (ppGpp synthetase) [Anoxybacillus
flavithermus WK1]
Length = 732
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 GIQAEISGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRIIV---------ESIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVVGPKGEPLEVQIRTFEMHHIAEFGIAAH 343
Query: 397 WLYKE 401
W YKE
Sbjct: 344 WAYKE 348
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 84/148 (56%), Gaps = 16/148 (10%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ AG LHDVV+D + +E EFG EVA LV GV++L I
Sbjct: 70 TIAAGFLHDVVEDTHVTKEDLEREFGKEVAMLVDGVTKLGKIK--------------YKS 115
Query: 73 HEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
HEE A + R M L M D RV+LIKLADRLHNMRT+ LP K R +A ETL I+ LA
Sbjct: 116 HEEQQAENHRKMFLAMAQDIRVILIKLADRLHNMRTLKHLPIEKQRRIANETLEIFAPLA 175
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELED L PQ + ++
Sbjct: 176 HRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|83590516|ref|YP_430525.1| (p)ppGpp synthetase SpoT/RelA [Moorella thermoacetica ATCC 39073]
gi|83573430|gb|ABC19982.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA [Moorella
thermoacetica ATCC 39073]
Length = 717
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 82/127 (64%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K YSI++KM ++ + ++YD A+RV+V ++ CY++L
Sbjct: 227 GIKADIQGRPKHFYSIYNKMVKQGKELSEIYDLIAVRVIVD---------TVKECYAVLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W PI G F DY+ PKP+ YQSLHT V GP+G E+QIRT +MH AE+G+AAH
Sbjct: 278 VVHAIWKPIPGRFKDYVAMPKPNMYQSLHTTVIGPNGDPFEIQIRTWEMHRTAEYGIAAH 337
Query: 397 WLYKETG 403
W YKE G
Sbjct: 338 WRYKEGG 344
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 121/220 (55%), Gaps = 24/220 (10%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V T+ A +LHDVV+D SL +I+E FG+EVA LV GV++LS + T
Sbjct: 62 VVTIAAALLHDVVEDTPVSLDTIKELFGEEVALLVDGVTKLS------------RLEYKT 109
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
++A LR M L M D RV+LIKLADRLHNMRT+ PP K + +A+ETL I+ LA
Sbjct: 110 KEEQQAETLRKMFLTMAQDIRVILIKLADRLHNMRTLKYHPPEKQQEIARETLEIFAPLA 169
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDER 190
RLG++ LK ELED L+P+ + ++ + R R Y R++ I+ LDE
Sbjct: 170 HRLGIFRLKWELEDQSLRYLEPERYYELVNSINM--KRREREEYIRQVVDILRQ-KLDEA 226
Query: 191 TASDD------ESFTTFDEHVLSMKDLLEAVVPFDILSDR 224
D ++ +++ V K+L E +D+++ R
Sbjct: 227 GIKADIQGRPKHFYSIYNKMVKQGKELSEI---YDLIAVR 263
>gi|253732290|ref|ZP_04866455.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253724079|gb|EES92808.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
Length = 736
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 77 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 125 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 184
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 185 LGINTIKWELEDTALRYIDNVQYFR 209
>gi|452995059|emb|CCQ93294.1| GTP pyrophosphokinase (RelA/SpoT) [Clostridium ultunense Esp]
Length = 723
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 87/131 (66%), Gaps = 10/131 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ KM + +++YD A+R++V + ++ CY++L
Sbjct: 227 GIKCDISGRPKHIYSIYRKMFLQHKEFNEIYDLLAIRIIVEN---------VRDCYAVLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LEVQIRTQ+MH AE+G+AAH
Sbjct: 278 VVHTLWKPMPGRFKDYIAMPKANLYQSLHTTVIGPEGEPLEVQIRTQEMHRTAEYGIAAH 337
Query: 397 WLYKETGNKLQ 407
W YKE G +L+
Sbjct: 338 WAYKE-GKRLK 347
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 85/143 (59%), Gaps = 12/143 (8%)
Query: 16 AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE 75
A +LHDVV+D +L + +EFG EVA+LV GV++L RRI + ++
Sbjct: 67 AALLHDVVEDTHATLDQVRQEFGVEVAELVDGVTKL----------RRIKYK--SQEEQQ 114
Query: 76 ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGL 135
A + R MLL M D RV+LIKLADRLHNMRT+ R +A ETL I+ +A RLG+
Sbjct: 115 AENHRKMLLAMAKDVRVILIKLADRLHNMRTLKYRSEEDQRRIANETLEIFAPIAHRLGI 174
Query: 136 WALKAELEDLCFAVLQPQIFRKM 158
+K ELED+ + PQ + ++
Sbjct: 175 STIKWELEDISLRYINPQQYYRI 197
>gi|49486467|ref|YP_043688.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus MSSA476]
gi|253733115|ref|ZP_04867280.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus TCH130]
gi|257793707|ref|ZP_05642686.1| ppGpp hydrolase [Staphylococcus aureus A9781]
gi|258410994|ref|ZP_05681274.1| ppGpp hydrolase [Staphylococcus aureus A9763]
gi|258420205|ref|ZP_05683160.1| GTP pyrophosphokinase [Staphylococcus aureus A9719]
gi|258438207|ref|ZP_05689491.1| ppGpp hydrolase [Staphylococcus aureus A9299]
gi|258443670|ref|ZP_05692009.1| ppGpp hydrolase [Staphylococcus aureus A8115]
gi|258446877|ref|ZP_05695031.1| GTP pyrophosphokinase [Staphylococcus aureus A6300]
gi|258448791|ref|ZP_05696903.1| GTP pyrophosphokinase [Staphylococcus aureus A6224]
gi|258453609|ref|ZP_05701587.1| ppGpp hydrolase [Staphylococcus aureus A5937]
gi|282893138|ref|ZP_06301372.1| GTP pyrophosphokinase [Staphylococcus aureus A8117]
gi|295406755|ref|ZP_06816560.1| GTP pyrophosphokinase [Staphylococcus aureus A8819]
gi|297207646|ref|ZP_06924081.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297245662|ref|ZP_06929527.1| GTP pyrophosphokinase [Staphylococcus aureus A8796]
gi|300911728|ref|ZP_07129171.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus TCH70]
gi|418424820|ref|ZP_12997933.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS1]
gi|418427775|ref|ZP_13000780.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS2]
gi|418430620|ref|ZP_13003529.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS3a]
gi|418433912|ref|ZP_13006353.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS4]
gi|418440156|ref|ZP_13011856.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS6]
gi|418449252|ref|ZP_13020636.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS9]
gi|418452062|ref|ZP_13023396.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS10]
gi|418455058|ref|ZP_13026317.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS11a]
gi|418457936|ref|ZP_13029135.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS11b]
gi|424775017|ref|ZP_18202016.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus CM05]
gi|448740360|ref|ZP_21722339.1| GTP pyrophosphokinase [Staphylococcus aureus KT/314250]
gi|448743282|ref|ZP_21725192.1| GTP pyrophosphokinase [Staphylococcus aureus KT/Y21]
gi|59798269|sp|Q6G8T5.1|RELA_STAAS RecName: Full=GTP pyrophosphokinase; AltName: Full=(p)ppGpp
synthase; AltName: Full=ATP:GTP
3'-pyrophosphotransferase; AltName: Full=ppGpp synthase
I
gi|59798429|sp|Q99TL8.2|RELA_STAAN RecName: Full=GTP pyrophosphokinase; AltName: Full=(p)ppGpp
synthase; AltName: Full=ATP:GTP
3'-pyrophosphotransferase; AltName: Full=ppGpp synthase
I
gi|59800175|sp|P0A0E9.1|RELA_STAAW RecName: Full=GTP pyrophosphokinase; AltName: Full=(p)ppGpp
synthase; AltName: Full=ATP:GTP
3'-pyrophosphotransferase; AltName: Full=ppGpp synthase
I
gi|59800176|sp|P0A0F0.1|RELA_STAAU RecName: Full=GTP pyrophosphokinase; AltName: Full=(p)ppGpp
synthase; AltName: Full=ATP:GTP
3'-pyrophosphotransferase; AltName: Full=ppGpp synthase
I
gi|2580433|dbj|BAA23138.1| ppGpp hydrolase [Staphylococcus aureus]
gi|49244910|emb|CAG43371.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus MSSA476]
gi|253728871|gb|EES97600.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus TCH130]
gi|257787679|gb|EEV26019.1| ppGpp hydrolase [Staphylococcus aureus A9781]
gi|257840144|gb|EEV64608.1| ppGpp hydrolase [Staphylococcus aureus A9763]
gi|257843916|gb|EEV68310.1| GTP pyrophosphokinase [Staphylococcus aureus A9719]
gi|257848251|gb|EEV72242.1| ppGpp hydrolase [Staphylococcus aureus A9299]
gi|257851076|gb|EEV75019.1| ppGpp hydrolase [Staphylococcus aureus A8115]
gi|257854452|gb|EEV77401.1| GTP pyrophosphokinase [Staphylococcus aureus A6300]
gi|257858069|gb|EEV80958.1| GTP pyrophosphokinase [Staphylococcus aureus A6224]
gi|257864340|gb|EEV87090.1| ppGpp hydrolase [Staphylococcus aureus A5937]
gi|282764456|gb|EFC04582.1| GTP pyrophosphokinase [Staphylococcus aureus A8117]
gi|294968502|gb|EFG44526.1| GTP pyrophosphokinase [Staphylococcus aureus A8819]
gi|296887663|gb|EFH26561.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297177313|gb|EFH36565.1| GTP pyrophosphokinase [Staphylococcus aureus A8796]
gi|300885974|gb|EFK81176.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus TCH70]
gi|387717760|gb|EIK05758.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS3a]
gi|387718063|gb|EIK06058.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS2]
gi|387719270|gb|EIK07221.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS1]
gi|387724807|gb|EIK12446.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS4]
gi|387729870|gb|EIK17283.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS6]
gi|387736462|gb|EIK23556.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS9]
gi|387744943|gb|EIK31707.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS10]
gi|387745111|gb|EIK31873.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS11a]
gi|387746704|gb|EIK33433.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS11b]
gi|402346875|gb|EJU81945.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus CM05]
gi|408423735|emb|CCJ11146.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ST228]
gi|408425725|emb|CCJ13112.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ST228]
gi|408427712|emb|CCJ15075.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ST228]
gi|408429701|emb|CCJ26866.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ST228]
gi|408431688|emb|CCJ19003.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ST228]
gi|408433682|emb|CCJ20967.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ST228]
gi|408435674|emb|CCJ22934.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ST228]
gi|408437658|emb|CCJ24901.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ST228]
gi|445548844|gb|ELY17091.1| GTP pyrophosphokinase [Staphylococcus aureus KT/314250]
gi|445563411|gb|ELY19572.1| GTP pyrophosphokinase [Staphylococcus aureus KT/Y21]
Length = 736
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 77 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 125 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 184
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 185 LGINTIKWELEDTALRYIDNVQYFR 209
>gi|282928269|ref|ZP_06335874.1| GTP pyrophosphokinase [Staphylococcus aureus A10102]
gi|282590076|gb|EFB95158.1| GTP pyrophosphokinase [Staphylococcus aureus A10102]
Length = 736
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 77 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 125 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 184
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 185 LGINTIKWELEDTALRYIDNVQYFR 209
>gi|59798426|sp|Q931Q4.2|RELA_STAAM RecName: Full=GTP pyrophosphokinase; AltName: Full=(p)ppGpp
synthase; AltName: Full=ATP:GTP
3'-pyrophosphotransferase; AltName: Full=ppGpp synthase
I
Length = 736
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 84/145 (57%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 77 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA
Sbjct: 125 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHH 184
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 185 LGINTIKWELEDTALRYIDNVQYFR 209
>gi|418446239|ref|ZP_13017712.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS8]
gi|387735171|gb|EIK22308.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS8]
Length = 736
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 77 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 125 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 184
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 185 LGINTIKWELEDTALRYIDNVQYFR 209
>gi|261855417|ref|YP_003262700.1| RelA/SpoT family protein [Halothiobacillus neapolitanus c2]
gi|261835886|gb|ACX95653.1| RelA/SpoT family protein [Halothiobacillus neapolitanus c2]
Length = 706
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 81/128 (63%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM+RK + ++D RALRV V +Q CY+ L
Sbjct: 229 GIKARVYGRPKHIYSIWGKMQRKKLSFDGLFDVRALRVEVD---------TLQDCYAALS 279
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+ H L+ PI+ E+DDYI PK +GYQSLHTAV D +E+QIRT+ MHE AE G+AAH
Sbjct: 280 VAHSLFSPIEAEYDDYIARPKENGYQSLHTAVHALDDKVVEIQIRTRAMHEQAELGVAAH 339
Query: 397 WLYKETGN 404
W YKE G
Sbjct: 340 WRYKEGGG 347
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 16/177 (9%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++TV A +L D L + ++G+ VA V + RL + + RR ++ + +
Sbjct: 60 IETVQACVLADPRLQGKMDLAELRRDYGEVVAGQVEQMQRLLQLGEQYRRDQQADWYE-- 117
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPP-AKARAVAQETLLIWCSL 129
+LR +LL + D RV+LI+L RL +R + P K RA+A ETL ++ +
Sbjct: 118 -------NLRRLLLSAISDVRVMLIQLVHRLERLRGLAFEPDLTKRRAIAAETLDVYAPI 170
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSRRITTIVSS 184
A RLGL +K ELEDL F L+P+I+++ +A + R R Y R+ T + S
Sbjct: 171 AHRLGLGQIKWELEDLAFRHLEPEIYKR----IAHLLDERRTEREAYLLRVRTTLES 223
>gi|298529911|ref|ZP_07017313.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509285|gb|EFI33189.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfonatronospira thiodismutans
ASO3-1]
Length = 720
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 22/157 (14%)
Query: 261 EEALEKELLISTSYIP-------------GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVY 307
+E + K+ ++ YI +E +S R+K +YSI+ KM ++ + + +V+
Sbjct: 199 QEGVNKQKVVGEQYIQKVCQNIEEILEQNSIEGRVSGRMKHIYSIYHKMVQQGLSLDQVF 258
Query: 308 DARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTA 367
D A RV+V +I+ CY++L +VH +W P+ G F DYI PK + YQSLHT
Sbjct: 259 DIIAFRVLV---------QSIKDCYAVLGLVHSIWKPVPGRFKDYISMPKANMYQSLHTT 309
Query: 368 VQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 404
V GPDG +E+QIRT++MH+ AE G+A+HW YKE G
Sbjct: 310 VIGPDGERIEIQIRTEEMHKMAEFGVASHWRYKEDGK 346
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 96/148 (64%), Gaps = 12/148 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DT+ AG+LHD V+D SL + ++FG+EVA++V GV+++ ++ +
Sbjct: 64 DTIAAGLLHDTVEDTKASLEEVRDQFGEEVARIVKGVTKIG------------KMSFDSK 111
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A ++R M+L M DD RV+L+KLADRLHNM+T+ K +AVAQET+ I+ LA+
Sbjct: 112 EEAQAENIRKMILAMADDIRVILVKLADRLHNMKTLEHQSSFKQKAVAQETMDIYAPLAN 171
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMR 159
RLGL+ LK +LEDL ++P ++ +++
Sbjct: 172 RLGLYRLKIQLEDLSLRYMKPDVYFQIQ 199
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 21/100 (21%)
Query: 605 LRTMLRWEEQLRSE----ASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 660
LR +L W+E+L+ ASLR + V V P GE+ L G+T
Sbjct: 360 LRQILDWQEELKDPREFMASLRFDLFEDE-------------VYVFTPRGEVKELPEGAT 406
Query: 661 AADAA----MKVGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
D A +VG VNG+LV NT LK+GD VE+
Sbjct: 407 PIDFAYMIHTEVGDRCAGAKVNGKLVPLNTVLKNGDTVEI 446
>gi|49483878|ref|YP_041102.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus MRSA252]
gi|87162370|ref|YP_494285.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|151221748|ref|YP_001332570.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus str.
Newman]
gi|161509859|ref|YP_001575518.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257425758|ref|ZP_05602182.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 55/2053]
gi|257428418|ref|ZP_05604816.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257431056|ref|ZP_05607435.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 68-397]
gi|257433742|ref|ZP_05610100.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus E1410]
gi|257436657|ref|ZP_05612701.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus M876]
gi|258450540|ref|ZP_05698602.1| GTP pyrophosphokinase [Staphylococcus aureus A5948]
gi|282904214|ref|ZP_06312102.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus C160]
gi|282906040|ref|ZP_06313895.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus Btn1260]
gi|282908953|ref|ZP_06316771.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911270|ref|ZP_06319072.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914439|ref|ZP_06322225.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus M899]
gi|282916902|ref|ZP_06324660.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus D139]
gi|282919408|ref|ZP_06327143.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus C427]
gi|282920183|ref|ZP_06327908.1| GTP pyrophosphokinase [Staphylococcus aureus A9765]
gi|282924732|ref|ZP_06332400.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus C101]
gi|283770708|ref|ZP_06343600.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus H19]
gi|283958394|ref|ZP_06375845.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293503512|ref|ZP_06667359.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 58-424]
gi|293510530|ref|ZP_06669236.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus M809]
gi|293531071|ref|ZP_06671753.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus M1015]
gi|294848663|ref|ZP_06789409.1| GTP pyrophosphokinase [Staphylococcus aureus A9754]
gi|297590823|ref|ZP_06949461.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus MN8]
gi|384547864|ref|YP_005737117.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ED133]
gi|384867394|ref|YP_005747590.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus TCH60]
gi|386729333|ref|YP_006195716.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 71193]
gi|386831240|ref|YP_006237894.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|418978356|ref|ZP_13526157.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus DR10]
gi|422742582|ref|ZP_16796585.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus MRSA177]
gi|422746071|ref|ZP_16800004.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus MRSA131]
gi|59798275|sp|Q6GG70.1|RELA_STAAR RecName: Full=GTP pyrophosphokinase; AltName: Full=(p)ppGpp
synthase; AltName: Full=ATP:GTP
3'-pyrophosphotransferase; AltName: Full=ppGpp synthase
I
gi|49242007|emb|CAG40705.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus MRSA252]
gi|87128344|gb|ABD22858.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|150374548|dbj|BAF67808.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus str.
Newman]
gi|160368668|gb|ABX29639.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257271452|gb|EEV03598.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 55/2053]
gi|257275259|gb|EEV06746.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278259|gb|EEV08901.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 68-397]
gi|257281835|gb|EEV11972.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus E1410]
gi|257284008|gb|EEV14131.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus M876]
gi|257861698|gb|EEV84497.1| GTP pyrophosphokinase [Staphylococcus aureus A5948]
gi|282313567|gb|EFB43962.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus C101]
gi|282317218|gb|EFB47592.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus C427]
gi|282319389|gb|EFB49741.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus D139]
gi|282321620|gb|EFB51945.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus M899]
gi|282324965|gb|EFB55275.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282327217|gb|EFB57512.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331332|gb|EFB60846.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus Btn1260]
gi|282594531|gb|EFB99516.1| GTP pyrophosphokinase [Staphylococcus aureus A9765]
gi|282595832|gb|EFC00796.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus C160]
gi|283460855|gb|EFC07945.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus H19]
gi|283790543|gb|EFC29360.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290920339|gb|EFD97405.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus M1015]
gi|291095178|gb|EFE25443.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 58-424]
gi|291466894|gb|EFF09414.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus M809]
gi|294824689|gb|EFG41112.1| GTP pyrophosphokinase [Staphylococcus aureus A9754]
gi|297575709|gb|EFH94425.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus MN8]
gi|298694913|gb|ADI98135.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ED133]
gi|312437899|gb|ADQ76970.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus TCH60]
gi|320140479|gb|EFW32333.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus MRSA131]
gi|320144018|gb|EFW35787.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus MRSA177]
gi|379993972|gb|EIA15417.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus DR10]
gi|384230626|gb|AFH69873.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 71193]
gi|385196632|emb|CCG16262.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus HO 5096
0412]
Length = 736
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 77 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 125 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 184
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 185 LGINTIKWELEDTALRYIDNVQYFR 209
>gi|258424059|ref|ZP_05686941.1| GTP pyrophosphokinase [Staphylococcus aureus A9635]
gi|257845680|gb|EEV69712.1| GTP pyrophosphokinase [Staphylococcus aureus A9635]
Length = 736
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 77 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 125 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 184
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 185 LGINTIKWELEDTALRYIDNVQYFR 209
>gi|403379224|ref|ZP_10921281.1| (p)ppGpp synthetase I SpoT/RelA [Paenibacillus sp. JC66]
Length = 725
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 88/138 (63%), Gaps = 10/138 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E +S R K +YSI+ KM + +++YD A+RV+V + I+ CY+ L
Sbjct: 227 GIESDISGRPKHIYSIYKKMTARGKQFNEIYDLLAIRVIVDN---------IKDCYATLG 277
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT +MH +E+G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKTNMYQSLHTTVIGPKGEPLEVQIRTWEMHRTSEYGIAAH 337
Query: 397 WLYKETGNKLQSISSMDE 414
W YKE G+ + S S M++
Sbjct: 338 WAYKE-GSAVPSGSFMEK 354
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 87/148 (58%), Gaps = 12/148 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V +V+A +LHDVV+D SL +++E FG+ A LV G+++L I + + + N N
Sbjct: 62 VTSVIAALLHDVVEDTTVSLDTLKEHFGETCAMLVDGLTKLEKI-KFKSKQEQQNEN--- 117
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
R M + M D RV+LIKLADRLHNMRT+ R +A ETL I+C +A
Sbjct: 118 --------YRKMFVAMAQDIRVILIKLADRLHNMRTLKYQSEESQRRIADETLEIFCPIA 169
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ A+K E+ED+ L PQ + ++
Sbjct: 170 HRLGISAIKWEMEDIALRYLNPQKYYRI 197
>gi|418437259|ref|ZP_13009054.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS5]
gi|418443174|ref|ZP_13014773.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS7]
gi|387726919|gb|EIK14456.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS5]
gi|387736850|gb|EIK23938.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS7]
Length = 736
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 77 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 125 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 184
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 185 LGINTIKWELEDTALRYIDNVQYFR 209
>gi|418884672|ref|ZP_13438855.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1769]
gi|377711924|gb|EHT36149.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1769]
Length = 700
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDNVQYFR 202
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,572,620,920
Number of Sequences: 23463169
Number of extensions: 434820099
Number of successful extensions: 1141052
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5260
Number of HSP's successfully gapped in prelim test: 997
Number of HSP's that attempted gapping in prelim test: 1113693
Number of HSP's gapped (non-prelim): 17128
length of query: 698
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 548
effective length of database: 8,839,720,017
effective search space: 4844166569316
effective search space used: 4844166569316
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)