BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005392
(698 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P74007|SPOT_SYNY3 Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT
PE=3 SV=1
Length = 760
Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 90/147 (61%), Gaps = 12/147 (8%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGH 73
+ AG LHDVV+D S+ IE FG+E A LV GV++LS N +
Sbjct: 97 IAAGFLHDVVEDTDISIEQIEALFGEETASLVEGVTKLS------------KFNFSSTTE 144
Query: 74 EEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRL 133
+A + R M L M D RV+++KLADRLHNMRT+ AL P K R +A+ET I+ LA+RL
Sbjct: 145 HQAENFRRMFLAMAKDIRVIVVKLADRLHNMRTLDALSPEKQRRIARETKDIFAPLANRL 204
Query: 134 GLWALKAELEDLCFAVLQPQIFRKMRA 160
G+W K ELEDL F L+P +RK+++
Sbjct: 205 GIWRFKWELEDLSFKYLEPDSYRKIQS 231
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 82/134 (61%), Gaps = 10/134 (7%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
L R K LY I+ KM +D ++YD ALR++V K CY L +VH +
Sbjct: 265 LQGRPKHLYGIYYKMTSQDKAFEEIYDIAALRIIVESKGE---------CYRALSVVHDV 315
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ PI G F DYI PKP+ YQSLHT V G LE+QIRT++MH AE+G+AAHW YKE
Sbjct: 316 FKPIPGRFKDYIGLPKPNRYQSLHTTVLGLTSRPLEIQIRTEEMHHVAEYGIAAHWKYKE 375
Query: 402 T-GNKLQSISSMDE 414
+ G++ +++S DE
Sbjct: 376 SGGSENATLTSTDE 389
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 596 ASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 655
S + K LR +L W+ L+ ++ K N D V V P GE++ L
Sbjct: 385 TSTDEKFTWLRQLLDWQSDLKDAQEYVENL---KQNLFDDDVY------VFTPKGEVISL 435
Query: 656 RSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 696
G+T D A + VG K VNGQ + +T LK+GDIVE+
Sbjct: 436 ARGATPVDFAYRIHTEVGHHMKGARVNGQWLGVDTRLKNGDIVEI 480
>sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA
PE=3 SV=1
Length = 736
Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 77 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 125 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 184
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 185 LGINTIKWELEDTALRYIDNVQYFR 209
>sp|P0A0F0|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1
Length = 736
Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 77 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 125 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 184
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 185 LGINTIKWELEDTALRYIDNVQYFR 209
>sp|Q6G8T5|RELA_STAAS GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476)
GN=relA PE=3 SV=1
Length = 736
Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 77 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 125 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 184
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 185 LGINTIKWELEDTALRYIDNVQYFR 209
>sp|Q99TL8|RELA_STAAN GTP pyrophosphokinase OS=Staphylococcus aureus (strain N315)
GN=relA PE=1 SV=2
Length = 736
Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 77 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 125 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 184
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 185 LGINTIKWELEDTALRYIDNVQYFR 209
>sp|Q931Q4|RELA_STAAM GTP pyrophosphokinase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=relA PE=3 SV=2
Length = 736
Score = 126 bits (316), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 84/145 (57%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 77 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA
Sbjct: 125 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHH 184
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 185 LGINTIKWELEDTALRYIDNVQYFR 209
>sp|Q6GG70|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252)
GN=relA PE=3 SV=1
Length = 736
Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 397 WLYKE----------TGNKLQSISSMDESDIEASSS 422
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + ++E F +EVA++V GV++L V +
Sbjct: 77 TIVAGFLHDVIEDTPYTFEDVKEMFNEEVARIVDGVTKLK------------KVKYRSKE 124
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 125 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQIRISRETLEIYAPLAHR 184
Query: 133 LGLWALKAELEDLCFAVL-QPQIFR 156
LG+ +K ELED + Q FR
Sbjct: 185 LGINTIKWELEDTALRYIDNVQYFR 209
>sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA
PE=3 SV=3
Length = 734
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIKADFSGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRILVN---------SIKDCYAVLG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAH 343
Query: 397 WLYKE 401
W YKE
Sbjct: 344 WAYKE 348
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ G LHDVV+D +L ++E F +EVA LV GV++L + +
Sbjct: 70 TIAGGFLHDVVEDTDVTLDDLKEAFSEEVAMLVDGVTKLG------------KIKYKSQE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R M + M D RV+LIKLADRLHNMRT+ LP K R ++ ETL I+ LA R
Sbjct: 118 EQQAENHRKMFVAMAQDIRVILIKLADRLHNMRTLKHLPQEKQRRISNETLEIFAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKM 158
LG+ +K ELED L PQ + ++
Sbjct: 178 LGISKIKWELEDTALRYLNPQQYYRI 203
Score = 36.2 bits (82), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 641 EVVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 696
++V V P G+++ L SGS D + ++ E G + VNG++V + +L+ GDIVE+
Sbjct: 392 DMVYVFTPKGDVIELPSGSVPIDFSYRIHSEIGNKTIGAKVNGKMVTLDHKLRTGDIVEI 451
>sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=relA PE=3 SV=1
Length = 729
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 19/145 (13%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM ++ +++D A+R++V +I CY+ L +VH L
Sbjct: 238 INGRPKHIYSIYRKMIKQKKQFDQIFDLLAIRIIVN---------SINDCYATLGLVHTL 288
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTHEMHEIAEHGVAAHWAYKE 348
Query: 402 TG----------NKLQSISSMDESD 416
NKL + + E+D
Sbjct: 349 GKTVNQKTQDFQNKLNWLKELAETD 373
Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + +++ F +E+A++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTSYTFEDVKDMFNEEIARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQVRISKETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQP-QIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDSVQYFR 202
>sp|Q5HNR8|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=relA PE=3 SV=1
Length = 729
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 19/145 (13%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R K +YSI+ KM ++ +++D A+R++V +I CY+ L +VH L
Sbjct: 238 INGRPKHIYSIYRKMIKQKKQFDQIFDLLAIRIIVN---------SINDCYATLGLVHTL 288
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTHEMHEIAEHGVAAHWAYKE 348
Query: 402 TG----------NKLQSISSMDESD 416
NKL + + E+D
Sbjct: 349 GKTVNQKTQDFQNKLNWLKELAETD 373
Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 85/145 (58%), Gaps = 13/145 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VAG LHDV++D + +++ F +E+A++V GV++L V +
Sbjct: 70 TIVAGFLHDVIEDTSYTFEDVKDMFNEEIARIVDGVTKLK------------KVKYRSKE 117
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
++A + R + + + D RV+L+KLADRLHNMRT+ A+P K +++ETL I+ LA R
Sbjct: 118 EQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQVRISKETLEIYAPLAHR 177
Query: 133 LGLWALKAELEDLCFAVLQP-QIFR 156
LG+ +K ELED + Q FR
Sbjct: 178 LGINTIKWELEDTALRYIDSVQYFR 202
>sp|P0AG23|RELA_SHIFL GTP pyrophosphokinase OS=Shigella flexneri GN=relA PE=3 SV=1
Length = 744
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K++ +++D RA+R+V +Q CY+ L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIV---------AERLQDCYAALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+DT+ A +L + D S + E G V L+ GV ++ I QL H +
Sbjct: 73 IDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATH------TDS 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ E+ +++R MLL MVDD R V+IKLA+R+ ++R + P + A+E I+ LA
Sbjct: 127 VSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLA 186
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+ LK ELED CF L P ++++
Sbjct: 187 NRLGIGQLKWELEDYCFRYLHPTEYKRI 214
>sp|P0AG20|RELA_ECOLI GTP pyrophosphokinase OS=Escherichia coli (strain K12) GN=relA PE=1
SV=1
Length = 744
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K++ +++D RA+R+V +Q CY+ L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIV---------AERLQDCYAALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+DT+ A +L + D S + E G V L+ GV ++ I QL H +
Sbjct: 73 IDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATH------TDS 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ E+ +++R MLL MVDD R V+IKLA+R+ ++R + P + A+E I+ LA
Sbjct: 127 VSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLA 186
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+ LK ELED CF L P ++++
Sbjct: 187 NRLGIGQLKWELEDYCFRYLHPTEYKRI 214
>sp|P0AG21|RELA_ECOL6 GTP pyrophosphokinase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=relA PE=3 SV=1
Length = 744
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K++ +++D RA+R+V +Q CY+ L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIV---------AERLQDCYAALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+DT+ A +L + D S + E G V L+ GV ++ I QL H +
Sbjct: 73 IDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATH------TDS 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ E+ +++R MLL MVDD R V+IKLA+R+ ++R + P + A+E I+ LA
Sbjct: 127 VSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLA 186
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+ LK ELED CF L P ++++
Sbjct: 187 NRLGIGQLKWELEDYCFRYLHPTEYKRI 214
>sp|P0AG22|RELA_ECO57 GTP pyrophosphokinase OS=Escherichia coli O157:H7 GN=relA PE=3 SV=1
Length = 744
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ + R K +YSI+ KM++K++ +++D RA+R+V +Q CY+ L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIV---------AERLQDCYAALG 294
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
IVH + + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAH 354
Query: 397 WLYKE 401
W YKE
Sbjct: 355 WKYKE 359
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+DT+ A +L + D S + E G V L+ GV ++ I QL H +
Sbjct: 73 IDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATH------TDS 126
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ E+ +++R MLL MVDD R V+IKLA+R+ ++R + P + A+E I+ LA
Sbjct: 127 VSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLA 186
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+ LK ELED CF L P ++++
Sbjct: 187 NRLGIGQLKWELEDYCFRYLHPTEYKRI 214
>sp|P55133|RELA_PHOAS GTP pyrophosphokinase OS=Photobacterium angustum (strain S14 / CCUG
15956) GN=relA PE=3 SV=1
Length = 744
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 87/133 (65%), Gaps = 9/133 (6%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
+ R K +YSI+ KM++K + +++D RA+R+V + +Q CY+ L +VH
Sbjct: 248 VQGRPKHIYSIWRKMQKKSLEFDELFDVRAVRIVAEE---------LQDCYAALGVVHTK 298
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401
+ + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE +E G+AAHW YKE
Sbjct: 299 YRHLPKEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKQMHEESELGVAAHWKYKE 358
Query: 402 TGNKLQSISSMDE 414
+ S+ DE
Sbjct: 359 GTASGGAQSAYDE 371
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 88/152 (57%), Gaps = 6/152 (3%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
DT++A +L+ +V+ C S +++EE+ + LV GV ++ I+QL + + T
Sbjct: 73 DTLIAALLYPLVEGGCYSTDALKEEYSGTILHLVQGVEQMCAISQLK------STAEETA 126
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ +++R MLL MVDD R V+IKLA+R+ N+R + P RA AQE I+ LA+
Sbjct: 127 QAAQVDNIRRMLLSMVDDFRCVVIKLAERICNLREVKDQPDEVRRAAAQECANIYAPLAN 186
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLA 163
RLG+ LK E+ED F P ++++ L+
Sbjct: 187 RLGIGQLKWEIEDYAFRYQHPDTYKQIAKQLS 218
>sp|P44644|RELA_HAEIN GTP pyrophosphokinase OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=relA PE=3 SV=1
Length = 743
Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 89/136 (65%), Gaps = 11/136 (8%)
Query: 279 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 338
+V + R K +YSI+ KM++K + +YD RA+R++V +Q CY+ L IV
Sbjct: 248 QVEVYGRPKHIYSIWRKMQKKHLEFSGLYDVRAVRIIV---------QKLQDCYTALGIV 298
Query: 339 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 398
H + + EFDDY+ NPKP+GYQS+HT V G G +EVQIRTQ+MH+ AE G+AAHW
Sbjct: 299 HTQFKHLPKEFDDYVANPKPNGYQSIHTVVLGKGGKPIEVQIRTQQMHDDAELGMAAHWK 358
Query: 399 YKETGNKLQSISSMDE 414
YKE GN S+S+ +E
Sbjct: 359 YKE-GNT-GSMSAYEE 372
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 9/148 (6%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T++ +L +V + S++E+FG ++ KL+ GV + I QL H +
Sbjct: 77 ETLLTAMLFPIVANKLTDWESLKEKFGAKITKLLKGVLEMDNIRQLNASH--------SA 128
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVA-QETLLIWCSLA 130
+ +++R MLL MVDD R V+IKLA+R+ +R + + +A +E I+ LA
Sbjct: 129 NALQVDNVRRMLLAMVDDFRCVIIKLAERITFLRDAEHRCAEEDKVLAVKECSYIYAPLA 188
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
+RLG+ LK ELED CF L P+ +R +
Sbjct: 189 NRLGIGQLKWELEDYCFRYLHPEQYRAI 216
>sp|Q49640|RELA_MYCLE Probable GTP pyrophosphokinase OS=Mycobacterium leprae (strain TN)
GN=relA PE=3 SV=1
Length = 787
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 91/149 (61%), Gaps = 16/149 (10%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
+ T+VA +LHD V+D +L ++ EEFGDEV LV GV++L +
Sbjct: 120 ITTLVAALLHDTVEDTGYTLEALSEEFGDEVGHLVDGVTKLDRV---------------V 164
Query: 71 LGHE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
LG E +R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + L
Sbjct: 165 LGSAAEGETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPL 224
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIFRKM 158
A RLG+ ++K ELEDL FA+L P+ + ++
Sbjct: 225 AHRLGMASVKWELEDLSFAILHPKKYEEI 253
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 269 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 328
+IST ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 275 IISTLGASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGIRILCDE---------I 325
Query: 329 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 388
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 326 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 385
Query: 389 AEHGLAAHWLYKETGNK 405
AE+G+AAHW YKE +
Sbjct: 386 AEYGIAAHWRYKEAKGR 402
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 696
+ V P G+++ L +GST D A V E G + VNG+LV +L++G+ VE+
Sbjct: 449 IFVFTPKGDVITLPTGSTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGEFVEI 506
>sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1
Length = 757
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 76/125 (60%), Gaps = 9/125 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ +S R K +YSI+ K++ + + +++D A R++ P CY L
Sbjct: 249 GLKGEVSGRFKHVYSIYKKIKSQGIDFDQIHDIIAFRII---------APTAPSCYEALG 299
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+VH +W P+ G F D+I PKP+ YQSLHT + GP +EVQIRT +MH+ AE G+AAH
Sbjct: 300 LVHEMWKPVPGRFKDFIAIPKPNMYQSLHTTIIGPLSERVEVQIRTSEMHKIAEEGIAAH 359
Query: 397 WLYKE 401
W YKE
Sbjct: 360 WKYKE 364
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 90/152 (59%), Gaps = 13/152 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
++V G+LHD ++D + + E FG EVA LV GV++LS + +L
Sbjct: 83 SIVTGLLHDTIEDTLATEEELTELFGSEVAHLVDGVTKLSKFSA-----------SASLS 131
Query: 73 HEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
EE A + R M++ M D RV+L+KLADR HNMRT+ + K +AQETL I+ LA
Sbjct: 132 QEEKQAENFRKMIIAMAQDIRVILVKLADRTHNMRTLDHMSEEKQARIAQETLDIYAPLA 191
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMRADL 162
+RLG+ +K ELEDL F ++PQ F ++A L
Sbjct: 192 NRLGISWIKTELEDLSFRYVKPQEFFALQAKL 223
>sp|O87331|RELA_CORGL GTP pyrophosphokinase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=relA PE=3 SV=2
Length = 760
Score = 116 bits (291), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 97/160 (60%), Gaps = 16/160 (10%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VA +LHD V+D SL + +FG+EVA+LV GV++L + LG
Sbjct: 97 TLVAALLHDTVEDTDYSLDDLTRDFGEEVARLVDGVTKLDKV---------------ALG 141
Query: 73 HE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
EA +R M++ M DPRV++IK+ADRLHNMRT+ LPP K A++TL + LA
Sbjct: 142 AAAEAETIRKMIVAMSQDPRVLVIKVADRLHNMRTMRFLPPEKQAKKARQTLEVIAPLAH 201
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 171
RLG+ ++K ELEDL FA+L P+ + ++ +A R+R
Sbjct: 202 RLGMASVKWELEDLSFAILYPKKYEEIVRLVADRAPSRDR 241
Score = 99.8 bits (247), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 66/118 (55%), Gaps = 9/118 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K +SI+ KM + ++D +R++V + N CY+ + +VH L+
Sbjct: 266 RPKHYWSIYQKMIVRGRDFDDIFDLVGIRILVDNVNN---------CYAAIGVVHSLFNA 316
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 402
+ G F DYI P+ YQSLHT V GP G LEVQ RT MH AE G+AAHW YKET
Sbjct: 317 LPGRFKDYISAPRFGVYQSLHTTVMGPGGKPLEVQARTHDMHYNAEFGIAAHWRYKET 374
Score = 34.3 bits (77), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 696
+ V P G+++ L ST D A V E G + +NG+LV T+LK GD VEV
Sbjct: 420 IFVFTPKGDVVNLPVNSTPVDFAYAVHTEVGHRCIGAKINGKLVALETKLKSGDRVEV 477
>sp|P66015|RELA_MYCBO Probable GTP pyrophosphokinase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=relA PE=3 SV=1
Length = 790
Score = 116 bits (290), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 90/147 (61%), Gaps = 16/147 (10%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VA +LHD V+D +L ++ EEFG+EV LV GV++L + LG
Sbjct: 125 TLVAALLHDTVEDTGYTLEALTEEFGEEVGHLVDGVTKLDRV---------------VLG 169
Query: 73 HE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E +R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA
Sbjct: 170 SAAEGETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAH 229
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ ++K ELEDL FA+L P+ + ++
Sbjct: 230 RLGMASVKWELEDLSFAILHPKKYEEI 256
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 269 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 328
+++T ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 278 IVNTLTASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------I 328
Query: 329 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 388
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 329 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 388
Query: 389 AEHGLAAHWLYKETGNK 405
AE+G+AAHW YKE +
Sbjct: 389 AEYGIAAHWRYKEAKGR 405
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 696
+ V P G+++ L +GST D A V E G + VNG+LV +L++G++VEV
Sbjct: 452 IFVFTPKGDVITLPTGSTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGEVVEV 509
>sp|P43811|SPOT_HAEIN Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=spoT PE=3 SV=1
Length = 677
Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 90/148 (60%), Gaps = 12/148 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+ V+A +LHDV++D + ++EEFG VA++V GVS+L + R+ ++
Sbjct: 37 EAVMAALLHDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVE------ 90
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+ R M+L M D RVVLIKLADR HNMRT+ +L P K R +A+ETL I+C LA
Sbjct: 91 ------NFRKMILAMTRDIRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAH 144
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMR 159
RLG+ +K ELEDL F + P + ++
Sbjct: 145 RLGIEHIKNELEDLSFQAMHPHRYEVLK 172
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 285 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 344
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 209 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 259
Query: 345 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 403
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 260 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 318
>sp|P66014|RELA_MYCTU Bifunctional (p)ppGpp synthase/hydrolase relA OS=Mycobacterium
tuberculosis GN=relA PE=1 SV=2
Length = 738
Score = 115 bits (289), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 90/147 (61%), Gaps = 16/147 (10%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+VA +LHD V+D +L ++ EEFG+EV LV GV++L + LG
Sbjct: 73 TLVAALLHDTVEDTGYTLEALTEEFGEEVGHLVDGVTKLDRV---------------VLG 117
Query: 73 HE-EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E +R M+ M DPRV++IK+ADRLHNMRT+ LPP K A+ETL + LA
Sbjct: 118 SAAEGETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAH 177
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ ++K ELEDL FA+L P+ + ++
Sbjct: 178 RLGMASVKWELEDLSFAILHPKKYEEI 204
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 269 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 328
+++T ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 226 IVNTLTASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------I 276
Query: 329 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 388
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 277 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 336
Query: 389 AEHGLAAHWLYKETGNK 405
AE+G+AAHW YKE +
Sbjct: 337 AEYGIAAHWRYKEAKGR 353
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 696
+ V P G+++ L +GST D A V E G + VNG+LV +L++G++VEV
Sbjct: 400 IFVFTPKGDVITLPTGSTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGEVVEV 457
>sp|O34098|SPOT_SPICI Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Spiroplasma citri GN=spoT PE=3 SV=1
Length = 749
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 97/157 (61%), Gaps = 12/157 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T++AG+LHDV++D + ++E FG E+A LV GV+++SY + R +
Sbjct: 69 TLIAGLLHDVLEDTPATFEELQELFGIEIANLVEGVTKVSY----FAKENRTQI------ 118
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A LR + L M D RV+++KLADRLHN++TI L P + + +A+E+L I+ ++A R
Sbjct: 119 --KAQYLRKLYLSMAKDIRVIIVKLADRLHNLKTIGYLKPERQQIIARESLEIYSAIAHR 176
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 169
LG+ A+K E+ED+ F ++ P + K+ + L S R
Sbjct: 177 LGMKAVKQEIEDISFKIINPVQYNKIVSLLESSNKER 213
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 79/139 (56%), Gaps = 12/139 (8%)
Query: 266 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 325
K++LI+ M V + R KS+YSI+ KM + ++D A+R++
Sbjct: 225 KKILITEK---KMSVKVYGRSKSIYSIYRKMNQFGKNFDDIHDILAVRIITN-------- 273
Query: 326 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 385
++ CY +L VH+ + P++ F DYI PK + YQSLHT + DG EVQIRT++M
Sbjct: 274 -SVDDCYKVLGFVHQHYTPLNNRFKDYIATPKHNLYQSLHTTIVADDGLIFEVQIRTEEM 332
Query: 386 HEYAEHGLAAHWLYKETGN 404
E AE G+AAHW YKE N
Sbjct: 333 DELAEQGVAAHWRYKEGEN 351
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 642 VVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEVR 697
++ V PNG+++ L GST D A K+ E G+ + +NG +T LK GD+V+++
Sbjct: 408 LIYVLTPNGKVVTLPFGSTVLDFAYKIHSEIGEKTIGAKINGLFSPISTVLKSGDVVDIK 467
>sp|O51216|SPOT_BORBU Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP
102532 / DSM 4680) GN=spoT PE=3 SV=1
Length = 667
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 86/140 (61%), Gaps = 15/140 (10%)
Query: 263 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 322
++EKEL S G+E ++ R K YSIF KM+ + + +++D +R++ +
Sbjct: 236 SIEKELQKS-----GIEAEITVRSKHFYSIFRKMQTRTNKLTQIFDTLGIRIICKKQ--- 287
Query: 323 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP-DGSALEVQIR 381
+ CY +L+IVHR+W PI G DYI +PK + YQSLHT V+ P D +E+QIR
Sbjct: 288 ------KECYEILEIVHRVWKPIPGRLKDYIASPKENKYQSLHTTVRIPEDNQLIEIQIR 341
Query: 382 TQKMHEYAEHGLAAHWLYKE 401
T++M A +G+AAHW+YKE
Sbjct: 342 TEEMDRIANYGVAAHWIYKE 361
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 93/165 (56%), Gaps = 12/165 (7%)
Query: 15 VAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE 74
+AG+LHDV++D I +EF +E+ L+ GV++ I+ L + R I +
Sbjct: 84 IAGLLHDVLEDTNVEKEEIVKEFDEEILSLIDGVTK---IHDLHNKTRSI---------K 131
Query: 75 EANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLG 134
EAN + M M D R+++IKLAD+LHNM T+ LP + +A++ L + +A RLG
Sbjct: 132 EANTISKMFFAMTHDIRIIIIKLADKLHNMTTLSYLPKNRQDRIAKDCLSTYVPIAERLG 191
Query: 135 LWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRIT 179
+ +LK LEDL F L P+ +++++ L+ R + Y +++
Sbjct: 192 ISSLKTYLEDLSFKHLYPKDYKEIKNFLSETKIEREKKLYKGKLS 236
>sp|O67012|SPOT_AQUAE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Aquifex
aeolicus (strain VF5) GN=spoT PE=3 SV=1
Length = 696
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 90/148 (60%), Gaps = 15/148 (10%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T++A +LHD ++D + I+E FG+ VAKLV GV+++ I
Sbjct: 68 ETIIAALLHDTLEDTDTTYEEIKERFGERVAKLVEGVTKIGKIK---------------Y 112
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
E+A + R ++L +DPRV+L+KL+DRL N++T++ K + +A+ET+ I+ LA
Sbjct: 113 KSEQAENYRKLILATAEDPRVILLKLSDRLDNVKTLWVFREEKRKKIAKETMEIYAPLAH 172
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMR 159
RLG+W++K ELED F L P+ + K+R
Sbjct: 173 RLGVWSIKNELEDWAFKYLYPEEYEKVR 200
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 77/128 (60%), Gaps = 9/128 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+E + R K YSI+ K RRK + + V+D +R++V + CY++L
Sbjct: 230 GIEAEIKYRSKHYYSIWEKTRRKGIRLEDVHDILGVRIIVN---------TVPECYTVLG 280
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
I+H L+ P+ G+F DYI PKP+ YQSLHT V G +E QIRT +MHE AE G+A+H
Sbjct: 281 IIHSLFRPVPGKFKDYISLPKPNLYQSLHTTVIADKGKLVEFQIRTWEMHERAEKGIASH 340
Query: 397 WLYKETGN 404
W YKE N
Sbjct: 341 WAYKEGKN 348
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 629 KANGNPDSVVPG-------EVVIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLV 677
+ + NP V+ E V V P G+++ L GST D A K VG
Sbjct: 366 QGSTNPSEVLENLKSNLFFEEVFVFTPKGDLVVLPKGSTPVDLAYKIHTEVGNHCAGAKS 425
Query: 678 NGQLVLPNTELKDGDIVEV 696
NG++V N ELK GD+VE+
Sbjct: 426 NGRIVPLNYELKSGDVVEI 444
>sp|P0AG26|SPOT_SHIFL Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Shigella flexneri GN=spoT PE=3 SV=1
Length = 702
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 94/148 (63%), Gaps = 12/148 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T++A +LHDV++D + +E+ FG VA+LV GVS+L ++L R ++
Sbjct: 64 ETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKL---DKLKFRDKK-------- 112
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A + R M++ MV D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ LA
Sbjct: 113 -EAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAH 171
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMR 159
RLG+ +K ELE+L F L P +R ++
Sbjct: 172 RLGIHHIKTELEELGFEALYPNRYRVIK 199
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K LYSI+ KM K+ H + D A RV+V D + CY +L
Sbjct: 228 GIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSD---------TCYRVLG 278
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + AE G+AAH
Sbjct: 279 QMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAH 338
Query: 397 WLYKETG 403
W YKE G
Sbjct: 339 WAYKEHG 345
>sp|P0AG24|SPOT_ECOLI Bifunctional (p)ppGpp synthase/hydrolase SpoT OS=Escherichia coli
(strain K12) GN=spoT PE=1 SV=1
Length = 702
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 94/148 (63%), Gaps = 12/148 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T++A +LHDV++D + +E+ FG VA+LV GVS+L ++L R ++
Sbjct: 64 ETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKL---DKLKFRDKK-------- 112
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A + R M++ MV D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ LA
Sbjct: 113 -EAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAH 171
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMR 159
RLG+ +K ELE+L F L P +R ++
Sbjct: 172 RLGIHHIKTELEELGFEALYPNRYRVIK 199
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K LYSI+ KM K+ H + D A RV+V D + CY +L
Sbjct: 228 GIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSD---------TCYRVLG 278
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + AE G+AAH
Sbjct: 279 QMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAH 338
Query: 397 WLYKETG 403
W YKE G
Sbjct: 339 WAYKEHG 345
>sp|P0AG25|SPOT_ECO57 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Escherichia coli O157:H7 GN=spoT PE=3 SV=1
Length = 702
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 94/148 (63%), Gaps = 12/148 (8%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+T++A +LHDV++D + +E+ FG VA+LV GVS+L ++L R ++
Sbjct: 64 ETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKL---DKLKFRDKK-------- 112
Query: 72 GHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLAS 131
+A + R M++ MV D RV+LIKLADR HNMRT+ +L P K R +A+ETL I+ LA
Sbjct: 113 -EAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAH 171
Query: 132 RLGLWALKAELEDLCFAVLQPQIFRKMR 159
RLG+ +K ELE+L F L P +R ++
Sbjct: 172 RLGIHHIKTELEELGFEALYPNRYRVIK 199
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 9/127 (7%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ +S R K LYSI+ KM K+ H + D A RV+V D + CY +L
Sbjct: 228 GIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSD---------TCYRVLG 278
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + AE G+AAH
Sbjct: 279 QMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAH 338
Query: 397 WLYKETG 403
W YKE G
Sbjct: 339 WAYKEHG 345
>sp|P52560|RELA_STRCO GTP pyrophosphokinase OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=relA PE=3 SV=1
Length = 847
Score = 113 bits (282), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 85/153 (55%), Gaps = 14/153 (9%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 331 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 381
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 382 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPGGKPVELQIRTFDMHRRAEYGIAAHW 441
Query: 398 LYKETGNKLQSISSMDESDIEASSSLSKDTDDH 430
YK+ ++++ + +A S K DDH
Sbjct: 442 KYKQ-----EAVAGASKVRTDAPKSSGKSKDDH 469
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 86/143 (60%), Gaps = 14/143 (9%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T++AG+LHD V+D L + +FGD V LV GV++L ++ +
Sbjct: 169 TLMAGLLHDTVEDTEYGLEDLRRDFGDVVTLLVDGVTKLD----------KVKFGEAA-- 216
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A +R M++ M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA R
Sbjct: 217 --QAETVRKMVVAMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHR 274
Query: 133 LGLWALKAELEDLCFAVLQPQIF 155
LG+ +K ELEDL FA+L P+++
Sbjct: 275 LGMNTIKWELEDLAFAILYPKMY 297
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 643 VIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 696
V V P G+++ L +G+T D A V E G + VNG+LV + L +GD+VEV
Sbjct: 505 VFVFTPKGDVIALPAGATPVDFAYAVHTEVGHRTIGARVNGRLVPLESTLDNGDLVEV 562
>sp|Q9KNM2|SPOT_VIBCH Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=spoT PE=1 SV=1
Length = 705
Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 92/149 (61%), Gaps = 12/149 (8%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
++T+ A +LHDV++D + ++ FG VA+LV GVS+L ++L R R+
Sbjct: 63 LETLQAALLHDVIEDCDVTKEDLDAHFGSSVAELVDGVSKL---DKLKFRDRK------- 112
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+A + R M+L MV D RV+LIKLADR NMRT+ AL P K R +A+ETL I+ LA
Sbjct: 113 --EAQAENFRKMVLAMVQDIRVILIKLADRTPNMRTLGALRPDKKRRIARETLEIYAPLA 170
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKMR 159
RLG+ +K ELE+L F L P +R ++
Sbjct: 171 HRLGIHNIKTELEELGFEALYPNRYRVLK 199
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 74/129 (57%), Gaps = 9/129 (6%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K+L+SI++KM+ K+ H + D A R+VV + CY +L
Sbjct: 228 GLPARVVGREKNLFSIYNKMKTKEQRFHTIMDIYAFRIVVDTAD---------TCYRVLG 278
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
VH L+ P DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPARMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 397 WLYKETGNK 405
W YK +
Sbjct: 339 WSYKANSER 347
>sp|Q54089|RELA_STREQ Bifunctional (p)ppGpp synthase/hydrolase RelA OS=Streptococcus
dysgalactiae subsp. equisimilis GN=relA PE=1 SV=1
Length = 739
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 78/125 (62%), Gaps = 10/125 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G+ + R K +YSI+ KMR K +++D A+R V+ ++ Y+++
Sbjct: 233 GLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQSD---------VYAMVG 283
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
+H LW P+ G F DYI PK +GYQS+HT V GP G +E+QIRT++MH+ AE+G+AAH
Sbjct: 284 YIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG-PIEIQIRTKEMHQVAEYGVAAH 342
Query: 397 WLYKE 401
W YK+
Sbjct: 343 WAYKK 347
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 84/148 (56%), Gaps = 16/148 (10%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
TV G LHDVV+D +L +IE +FG +V +V GV++L +
Sbjct: 70 TVACGFLHDVVEDTDITLDNIEFDFGKDVRDIVDGVTKLGKVE--------------YKS 115
Query: 73 HEE--ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
HEE A + R ML+ M D RV+L+KLADRLHNMRT+ L K +++ET+ I+ LA
Sbjct: 116 HEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLA 175
Query: 131 SRLGLWALKAELEDLCFAVLQPQIFRKM 158
RLG+ +K ELEDL F L F K+
Sbjct: 176 HRLGISRIKWELEDLAFRYLNETEFYKI 203
>sp|O85709|RELA_STRAT GTP pyrophosphokinase OS=Streptomyces antibioticus GN=relA PE=3
SV=1
Length = 841
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 74/124 (59%), Gaps = 9/124 (7%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
++ T++ R K YS++ K+ + ++YD +RV+V ++ CY+ L
Sbjct: 328 IKATVTGRPKHYYSVYQKIIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 378
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
VH W P+ G F DYI PK + YQSLHT V GP+G +E+QIRT MH AE+G+AAHW
Sbjct: 379 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPNGKPVELQIRTFDMHRRAEYGIAAHW 438
Query: 398 LYKE 401
YK+
Sbjct: 439 KYKQ 442
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 85/143 (59%), Gaps = 14/143 (9%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T++AG+LHD +D L + +FGD V LV GV++L ++ +
Sbjct: 166 TLMAGLLHDSREDTEYGLDDLRRDFGDVVGLLVDGVTKLD----------KVKFGEAA-- 213
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A +R M++ M DPRV++IKLADRLHNMRT+ L K A+ETL I+ LA R
Sbjct: 214 --QAETVRKMVVAMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHR 271
Query: 133 LGLWALKAELEDLCFAVLQPQIF 155
LG+ +K ELEDL FA+L P+++
Sbjct: 272 LGMNTIKWELEDLAFAILYPKMY 294
Score = 34.3 bits (77), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 14/153 (9%)
Query: 548 PTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRT 607
P +QI +EY ++ + V + S+ +D P + N + LR
Sbjct: 416 PVELQIRTFDMHRRAEYGIAAHWKYKQEAV-ARASKVRTDVPKPAKGKDDHLNDMAWLRQ 474
Query: 608 MLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMK 667
+L W+++ +S + V V P +++ L +G+T D A
Sbjct: 475 LLDWQKETEDPGEFLESLRFDLSRNE---------VFVFTPKSDVIALPAGATPVDFAYA 525
Query: 668 VGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 696
V E G + VNG+LV + L +GD+VEV
Sbjct: 526 VHTEVGHRTIGARVNGRLVPLESTLDNGDLVEV 558
>sp|Q8YG65|RSH_BRUME GTP pyrophosphokinase rsh OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=rsh PE=1 SV=2
Length = 750
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 100/171 (58%), Gaps = 14/171 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ +LHD ++D + I++ FG E+ KLV G+++L ++ + ++
Sbjct: 65 TIAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKA----------- 113
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A +LR +LL + +D RV+L+KLADRLHNMRT+ + K +A+ET+ I+ LA R
Sbjct: 114 -VQAENLRKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGR 172
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 183
+G+ ++ ELE+L F + P +R + LA + +NR G ++I T +S
Sbjct: 173 MGMQDMREELEELAFRYINPDAWRAVTDRLAELLE-KNR-GLLQKIETDLS 221
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMESKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 397 WLYKETG--NKLQSISS 411
+YK+ G N IS+
Sbjct: 339 SIYKDRGSANNPHKIST 355
>sp|A5VPI9|RSH_BRUO2 GTP pyrophosphokinase rsh OS=Brucella ovis (strain ATCC 25840 /
63/290 / NCTC 10512) GN=rsh PE=3 SV=1
Length = 750
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 100/171 (58%), Gaps = 14/171 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ +LHD ++D + I++ FG E+ KLV G+++L ++ + ++
Sbjct: 65 TIAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKA----------- 113
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A +LR +LL + +D RV+L+KLADRLHNMRT+ + K +A+ET+ I+ LA R
Sbjct: 114 -VQAENLRKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGR 172
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 183
+G+ ++ ELE+L F + P +R + LA + +NR G ++I T +S
Sbjct: 173 MGMQDMREELEELAFRYINPDAWRAVTDRLAELLE-KNR-GLLQKIETDLS 221
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 397 WLYKETG--NKLQSISS 411
+YK+ G N IS+
Sbjct: 339 SIYKDRGSANNPHKIST 355
>sp|Q57E90|RSH_BRUAB GTP pyrophosphokinase rsh OS=Brucella abortus biovar 1 (strain
9-941) GN=rsh PE=1 SV=1
Length = 750
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 100/171 (58%), Gaps = 14/171 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ +LHD ++D + I++ FG E+ KLV G+++L ++ + ++
Sbjct: 65 TIAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKA----------- 113
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A +LR +LL + +D RV+L+KLADRLHNMRT+ + K +A+ET+ I+ LA R
Sbjct: 114 -VQAENLRKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGR 172
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 183
+G+ ++ ELE+L F + P +R + LA + +NR G ++I T +S
Sbjct: 173 MGMQDMREELEELAFRYINPDAWRAVTDRLAELLE-KNR-GLLQKIETDLS 221
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 397 WLYKETG--NKLQSISS 411
+YK+ G N IS+
Sbjct: 339 SIYKDRGSANNPHKIST 355
>sp|Q2YN11|RSH_BRUA2 GTP pyrophosphokinase rsh OS=Brucella abortus (strain 2308) GN=rsh
PE=3 SV=1
Length = 750
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 100/171 (58%), Gaps = 14/171 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ +LHD ++D + I++ FG E+ KLV G+++L ++ + ++
Sbjct: 65 TIAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKA----------- 113
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A +LR +LL + +D RV+L+KLADRLHNMRT+ + K +A+ET+ I+ LA R
Sbjct: 114 -VQAENLRKLLLAISEDVRVLLVKLADRLHNMRTLGVMREDKRLRIAEETMDIYAPLAGR 172
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 183
+G+ ++ ELE+L F + P +R + LA + +NR G ++I T +S
Sbjct: 173 MGMQDMREELEELAFRYINPDAWRAVTDRLAELLE-KNR-GLLQKIETDLS 221
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 397 WLYKETG--NKLQSISS 411
+YK+ G N IS+
Sbjct: 339 SIYKDRGSANNPHKIST 355
>sp|Q8CY42|RSH_BRUSU GTP pyrophosphokinase rsh OS=Brucella suis biovar 1 (strain 1330)
GN=rsh PE=1 SV=1
Length = 750
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 100/171 (58%), Gaps = 14/171 (8%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLG 72
T+ +LHD ++D + I++ FG E+ KLV G+++L ++ + ++
Sbjct: 65 TIAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKA----------- 113
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASR 132
+A +LR +LL + +D RV+L+KLADRLHNMRT+ + K +A+ET+ I+ LA R
Sbjct: 114 -VQAENLRKLLLAISEDVRVLLVKLADRLHNMRTLGVMCEDKRLRIAEETMDIYAPLAGR 172
Query: 133 LGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVS 183
+G+ ++ ELE+L F + P +R + LA + +NR G ++I T +S
Sbjct: 173 MGMQDMREELEELAFRYINPDAWRAVTDRLAELLE-KNR-GLLQKIETDLS 221
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 397 WLYKETG--NKLQSISS 411
+YK+ G N IS+
Sbjct: 339 SIYKDRGSANNPHKIST 355
>sp|P75386|SPOT_MYCPN Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=spoT PE=3 SV=1
Length = 733
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 74/124 (59%), Gaps = 10/124 (8%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E L SR+K +YS + K+ + I K++D A+R++V + CY LL +
Sbjct: 252 IEYRLESRIKGIYSTYQKLTFHEQNIAKIHDLFAIRLIVKSELD---------CYHLLGL 302
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
+H + + F DYI +PK + YQS+HT V+ G +E+QIRTQ+M +++G A+HW
Sbjct: 303 IHLNFTVLMKHFKDYIASPKQNFYQSIHTTVR-LKGLNVEIQIRTQRMDHVSKYGFASHW 361
Query: 398 LYKE 401
+YKE
Sbjct: 362 IYKE 365
Score = 79.7 bits (195), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 85/146 (58%), Gaps = 10/146 (6%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTL 71
+TV AG+LHD+++D + + FG E+ LV V++++ + ++ R++N +
Sbjct: 81 NTVCAGLLHDIIEDTQVTEADLTAIFGKEITDLVVKVTKITSES---KKQRQLNRKK--- 134
Query: 72 GHEEANDLRVMLLGMVDDPRV--VLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSL 129
E+ N ++ + M V +++KLADRL N+ +I L K + +A+ETL ++ +
Sbjct: 135 --EDLNLKSLVNIAMSSQQEVNALVLKLADRLDNISSIEFLAVEKQKIIAKETLELYAKI 192
Query: 130 ASRLGLWALKAELEDLCFAVLQPQIF 155
A R+G++ +K +L DL F VL P+ F
Sbjct: 193 AGRIGMYPVKTQLADLSFKVLDPKNF 218
>sp|P47520|SPOT_MYCGE Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=spoT PE=3 SV=1
Length = 720
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 73/124 (58%), Gaps = 10/124 (8%)
Query: 278 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
+E L SR+K +YS + K+ + I K++D A+R++ + CY +L +
Sbjct: 239 IEYQLESRIKGIYSTYKKLTVHEQNISKIHDLFAIRLITKSELD---------CYHILGL 289
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 397
+H ++ F DYI +PK + YQS+HT V+ G +E+QIRTQ+M ++ GLA+HW
Sbjct: 290 IHLNFLIDSKYFKDYIASPKQNLYQSIHTTVR-LKGLNVEIQIRTQQMDNVSKFGLASHW 348
Query: 398 LYKE 401
+YKE
Sbjct: 349 IYKE 352
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 85/140 (60%), Gaps = 10/140 (7%)
Query: 13 TVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLR--RHRRINVNQGT 70
T+ AG+LHD+++D ++ +I F E+A+LV V++++ ++ R ++++ N+N +
Sbjct: 69 TICAGLLHDIIEDTDQTEANIAMIFSKEIAELVTKVTKITNESKKQRHLKNKKENLNLKS 128
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
+ N + + V+++KLADRL N+ +I LP K + +A+ETL ++ +A
Sbjct: 129 FVNIAINSQQ--------EINVMVLKLADRLDNIASIEFLPIEKQKVIAKETLELYAKIA 180
Query: 131 SRLGLWALKAELEDLCFAVL 150
R+G++ +K +L DL F VL
Sbjct: 181 GRIGMYPVKTKLADLSFKVL 200
>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1
Length = 1179
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 277 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 336
++ +LS R+KS YSI+ K KD+ I + D A R +V +K + CY +
Sbjct: 209 NIKASLSYRIKSPYSIWIKTLVKDIHITALNDILAFRAIVPNK---------KACYDVSK 259
Query: 337 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 396
++H + I +F DYI PK +GYQS+H + G + +E+QIR+ MH ++G +AH
Sbjct: 260 LIHLHYNTITSQFVDYIRYPKNNGYQSIHLVISGGNKGNIELQIRSTTMHRQTQYG-SAH 318
Query: 397 WLYK 400
YK
Sbjct: 319 HTYK 322
>sp|O31611|YJBM_BACSU GTP pyrophosphokinase YjbM OS=Bacillus subtilis (strain 168)
GN=yjbM PE=1 SV=1
Length = 211
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 19/157 (12%)
Query: 282 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 341
++ R+K + SI K RRK + +H++ ++ + G + IQ +L +
Sbjct: 43 VTGRVKPVASILEKARRKSIPLHEI---ETMQDIAGLRIMCQFVDDIQIVKEML-FARKD 98
Query: 342 WIPIDGEFDDYIVNPKPSGYQSLH-------TAVQGPDGSALEVQIRTQKMHEYA--EHG 392
+ +D DYI K SGY+S H V G +E+QIRT M+ +A EH
Sbjct: 99 FTVVDQR--DYIAEHKESGYRSYHLVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHS 156
Query: 393 LAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDD 429
L YK +GN + + + EA+S L ++ +
Sbjct: 157 LN----YKYSGNIPEKVKLRLQRASEAASRLDEEMSE 189
>sp|Q8N4P3|MESH1_HUMAN Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Homo sapiens GN=HDDC3 PE=1 SV=3
Length = 179
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 18/112 (16%)
Query: 1 MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR 60
+L +G + + A +LHD V+D +L +E FG +V +LV V+ + +L R
Sbjct: 42 ILTHEAGITDIVVLQAALLHDTVEDTDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLER- 100
Query: 61 HRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPP 112
+R+ V Q P L+KLAD+L+N+R + P
Sbjct: 101 -KRLQVEQAPHS----------------SPGAKLVKLADKLYNLRDLNRCTP 135
>sp|Q9D114|MESH1_MOUSE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Mus musculus GN=Hddc3 PE=2 SV=1
Length = 179
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 18/112 (16%)
Query: 1 MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR 60
+L +G + + A +LHD V+D +L +E FG +V +LV V+ + +L R+
Sbjct: 42 ILTHEAGITDIVVLQAALLHDTVEDTDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERK 101
Query: 61 HRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPP 112
+++ E+A P L+KLAD+L+N+R + P
Sbjct: 102 RQQV---------EQAPH---------SSPGAKLVKLADKLYNLRDLNRCTP 135
>sp|P39583|YWAC_BACSU GTP pyrophosphokinase YwaC OS=Bacillus subtilis (strain 168)
GN=ywaC PE=1 SV=1
Length = 210
Score = 40.8 bits (94), Expect = 0.036, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 24/123 (19%)
Query: 284 SRLKSLYSIFSKMRRKDVGI------HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337
SR+KS SI +K+ RK I ++D +R++ I Y+++++
Sbjct: 57 SRVKSFESIVNKLMRKGCEITTKEMKEHIHDIAGVRIICS---------FISDIYNVVNV 107
Query: 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP-------DGSALEVQIRTQKMHEYA- 389
+ + + DYI PKP+GY+SLH ++ P + E+QIRT M +A
Sbjct: 108 LKQHEDLRIVKVKDYIQTPKPNGYRSLHLIIEMPVNLTNRVEYVKAEIQIRTIAMDFWAS 167
Query: 390 -EH 391
EH
Sbjct: 168 LEH 170
>sp|Q568P1|MESH1_DANRE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Danio rerio GN=hddc3 PE=2 SV=1
Length = 180
Score = 40.4 bits (93), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 19/134 (14%)
Query: 11 VDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGT 70
V+ + A +LHD V+D + +E FG VA++V GV+ + + R +++ +
Sbjct: 53 VEVIQAALLHDTVEDTDTTFEELESVFGATVARIVQGVTDDKSLPKAERERQQVE-HAPH 111
Query: 71 LGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLA 130
H+ L+KLAD+L+N+R + P A + W S
Sbjct: 112 CSHQ-----------------AKLVKLADKLYNLRDLNRCTPEGWSAQRVQEYFEWASQV 154
Query: 131 SRLGLWALKAELED 144
+ GL A +E+
Sbjct: 155 VK-GLRGTNAAIEE 167
>sp|Q9VAM9|MESH1_DROME Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Drosophila melanogaster GN=Mesh1 PE=1 SV=1
Length = 179
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 14 VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRI-NVNQGTLG 72
++A +LHDVV+D S +E+ FG +V LV V+ + + R+ +I N + +
Sbjct: 56 LMAALLHDVVEDTDASFEDVEKLFGPDVCGLVREVTDDKSLEKQERKRLQIENAAKSSC- 114
Query: 73 HEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIW 126
R LIKLAD+L N+R + P ++ +W
Sbjct: 115 ------------------RAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVW 150
>sp|Q28C98|MESH1_XENTR Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
OS=Xenopus tropicalis GN=hddc3 PE=2 SV=1
Length = 179
Score = 37.0 bits (84), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 20/104 (19%)
Query: 11 VDTVV--AGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQ 68
DT V A +LHD V+D + IE FG +V +V V+ + ++ R +R+ +
Sbjct: 50 TDTAVLQAALLHDTVEDTNTTFEEIELHFGQDVRNIVEEVTDDKTLPKMER--KRLQMEH 107
Query: 69 GTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPP 112
++A L+KLAD+L+N+R + P
Sbjct: 108 APHCSQKAK----------------LVKLADKLYNLRDLKRCTP 135
>sp|P29941|YCB8_PSEDE Uncharacterized 19.2 kDa protein in cobO 3'region OS=Pseudomonas
denitrificans PE=4 SV=1
Length = 175
Score = 35.0 bits (79), Expect = 1.9, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 12 DTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLS 52
+ + A +LHD V+D +L I+E FG +VA LVA ++ +S
Sbjct: 56 EMIAAALLHDTVEDTDATLLEIKEAFGPKVATLVAWLTDIS 96
>sp|B6J5F6|RS4_COXB1 30S ribosomal protein S4 OS=Coxiella burnetii (strain CbuK_Q154)
GN=rpsD PE=3 SV=1
Length = 206
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 656 RSGSTAADAAMKVGLEGKLVLVNGQLV-LPNTELKDGDIVEVR 697
R G +A A + + K +LVNG++V +P+ ++K GDI+EVR
Sbjct: 104 RMGFSATRAEARQLISHKAILVNGEVVNIPSYQVKPGDIIEVR 146
>sp|Q83EQ3|RS4_COXBU 30S ribosomal protein S4 OS=Coxiella burnetii (strain RSA 493 /
Nine Mile phase I) GN=rpsD PE=3 SV=1
Length = 206
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 656 RSGSTAADAAMKVGLEGKLVLVNGQLV-LPNTELKDGDIVEVR 697
R G A A + + K +LVNG++V +P+ ++K GDI+EVR
Sbjct: 104 RMGFAATRAEARQLISHKAILVNGEVVNIPSYQVKPGDIIEVR 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 251,528,029
Number of Sequences: 539616
Number of extensions: 10449063
Number of successful extensions: 28497
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 28278
Number of HSP's gapped (non-prelim): 149
length of query: 698
length of database: 191,569,459
effective HSP length: 125
effective length of query: 573
effective length of database: 124,117,459
effective search space: 71119304007
effective search space used: 71119304007
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)