Query 005392
Match_columns 698
No_of_seqs 560 out of 2843
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 00:03:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 100.0 2.4E-88 8.2E-93 736.0 22.1 311 9-430 66-382 (393)
2 3l9d_A SMU.1046C, putative GTP 100.0 6.2E-42 2.1E-46 352.7 13.1 119 272-401 66-195 (255)
3 2be3_A GTP pyrophosphokinase; 100.0 4E-38 1.4E-42 320.1 9.2 170 262-442 27-216 (226)
4 3nqw_A CG11900; stringent resp 99.9 1.5E-22 5.2E-27 199.0 6.8 126 6-149 48-176 (179)
5 3nr1_A HD domain-containing pr 99.8 2.4E-21 8.1E-26 190.3 6.9 122 5-146 45-171 (178)
6 3hvz_A Uncharacterized protein 99.7 1.5E-18 5E-23 149.0 5.7 62 637-698 2-67 (78)
7 2eki_A DRG 1, developmentally- 99.1 6.8E-11 2.3E-15 104.2 6.9 58 641-698 10-86 (93)
8 2kmm_A Guanosine-3',5'-BIS(dip 99.0 4.1E-10 1.4E-14 93.7 5.8 56 643-698 3-62 (73)
9 3hvz_A Uncharacterized protein 98.9 3E-10 1E-14 97.4 1.8 52 436-494 9-70 (78)
10 1wwt_A Threonyl-tRNA synthetas 98.7 4.2E-08 1.4E-12 84.9 7.9 59 640-698 9-72 (88)
11 1wxq_A GTP-binding protein; st 98.4 9.6E-08 3.3E-12 104.2 4.4 58 641-698 318-394 (397)
12 2l32_A Small archaeal modifier 98.0 4.6E-06 1.6E-10 70.6 4.5 53 645-698 7-61 (74)
13 2hj1_A Hypothetical protein; s 97.9 3.2E-06 1.1E-10 75.3 2.5 46 653-698 30-84 (97)
14 1rws_A Hypothetical protein PF 97.9 7.2E-06 2.4E-10 69.5 3.9 53 646-698 18-72 (77)
15 1f0z_A THis protein; ubiquitin 97.8 1.8E-05 6.3E-10 64.9 4.7 52 647-698 4-61 (66)
16 2k5p_A THis protein, thiamine- 97.8 1.5E-05 5.3E-10 68.0 4.3 52 647-698 4-64 (78)
17 2kl0_A Putative thiamin biosyn 97.7 2.5E-05 8.5E-10 65.9 4.6 51 647-698 4-60 (73)
18 1tyg_B YJBS; alpha beta barrel 97.7 3.5E-05 1.2E-09 67.3 5.6 53 646-698 23-82 (87)
19 1ryj_A Unknown; beta/alpha pro 97.6 4.8E-05 1.7E-09 63.3 4.5 50 649-698 10-65 (70)
20 2cu3_A Unknown function protei 97.6 6.1E-05 2.1E-09 61.5 4.9 51 647-698 3-59 (64)
21 2eki_A DRG 1, developmentally- 97.6 2.8E-05 9.7E-10 68.5 2.6 58 437-496 14-91 (93)
22 2kmm_A Guanosine-3',5'-BIS(dip 97.2 0.00012 3.9E-09 60.5 2.0 52 436-494 4-65 (73)
23 2q5w_D Molybdopterin convertin 97.1 0.00034 1.2E-08 58.4 3.9 48 651-698 18-72 (77)
24 1vjk_A Molybdopterin convertin 96.9 0.00053 1.8E-08 60.4 3.9 48 651-698 29-93 (98)
25 3po0_A Small archaeal modifier 96.9 0.001 3.5E-08 57.2 5.1 46 652-697 21-83 (89)
26 1wwt_A Threonyl-tRNA synthetas 96.8 0.00062 2.1E-08 58.5 2.9 54 436-496 13-77 (88)
27 1fm0_D Molybdopterin convertin 96.5 0.0031 1.1E-07 52.9 5.6 42 656-697 23-75 (81)
28 1wxq_A GTP-binding protein; st 96.1 0.00072 2.5E-08 73.6 -0.9 45 444-493 345-396 (397)
29 1tke_A Threonyl-tRNA synthetas 96.0 0.002 6.9E-08 64.6 2.0 52 437-495 4-65 (224)
30 2g1e_A Hypothetical protein TA 95.9 0.0095 3.3E-07 50.8 5.6 47 652-698 18-85 (90)
31 3rpf_C Molybdopterin convertin 95.8 0.013 4.5E-07 48.7 5.6 45 652-697 15-68 (74)
32 3dwg_C 9.5 kDa culture filtrat 94.7 0.032 1.1E-06 48.1 5.0 42 656-697 23-87 (93)
33 2l52_A Methanosarcina acetivor 93.6 0.061 2.1E-06 47.3 4.5 45 653-698 23-94 (99)
34 1v8c_A MOAD related protein; r 92.8 0.08 2.7E-06 51.2 4.4 46 652-698 17-82 (168)
35 4a9a_A Ribosome-interacting GT 92.8 0.042 1.5E-06 59.5 2.6 42 657-698 323-375 (376)
36 2qjl_A URM1, ubiquitin-related 92.3 0.11 3.7E-06 45.6 4.2 45 653-697 24-93 (99)
37 2dby_A GTP-binding protein; GD 88.6 0.48 1.6E-05 51.0 5.9 55 643-697 285-365 (368)
38 1tke_A Threonyl-tRNA synthetas 88.0 0.28 9.5E-06 48.9 3.3 27 672-698 35-61 (224)
39 1jal_A YCHF protein; nucleotid 84.9 0.72 2.4E-05 49.7 4.7 56 642-697 279-360 (363)
40 1wgk_A Riken cDNA 2900073H19 p 83.8 1.2 4.2E-05 40.3 5.0 45 653-697 34-102 (114)
41 2ohf_A Protein OLA1, GTP-bindi 82.1 0.8 2.7E-05 49.9 3.7 55 643-697 306-386 (396)
42 1rws_A Hypothetical protein PF 80.8 0.62 2.1E-05 38.9 1.8 22 469-492 52-73 (77)
43 2hj1_A Hypothetical protein; s 78.4 0.66 2.3E-05 41.0 1.2 23 469-493 64-86 (97)
44 2k9x_A Tburm1, uncharacterized 75.3 1.8 6.1E-05 39.0 3.2 24 674-697 69-96 (110)
45 1f0z_A THis protein; ubiquitin 74.0 1.6 5.4E-05 35.2 2.3 22 469-492 37-62 (66)
46 1ryj_A Unknown; beta/alpha pro 73.3 1.8 6.2E-05 35.4 2.5 22 469-492 45-66 (70)
47 2l32_A Small archaeal modifier 73.0 1.3 4.3E-05 37.1 1.5 43 443-493 16-63 (74)
48 3fm8_A Kinesin-like protein KI 71.0 2.1 7.1E-05 39.3 2.6 23 674-696 91-113 (124)
49 2k6p_A Uncharacterized protein 70.9 2.5 8.5E-05 36.1 2.9 24 674-697 27-50 (92)
50 1tyg_B YJBS; alpha beta barrel 70.3 2.6 9E-05 36.4 3.0 22 469-492 58-83 (87)
51 1ni3_A YCHF GTPase, YCHF GTP-b 69.7 3.2 0.00011 45.1 4.2 56 642-697 307-388 (392)
52 2k5p_A THis protein, thiamine- 69.0 2 7E-05 36.2 1.9 23 469-493 40-66 (78)
53 4ejq_A Kinesin-like protein KI 66.0 3.3 0.00011 39.0 3.0 23 674-696 111-133 (154)
54 2kl0_A Putative thiamin biosyn 63.1 4.7 0.00016 33.4 3.0 23 469-493 36-62 (73)
55 4egx_A Kinesin-like protein KI 63.1 4 0.00014 39.8 3.0 22 675-696 142-163 (184)
56 1dm9_A Hypothetical 15.5 KD pr 63.0 5.3 0.00018 36.9 3.7 25 673-697 34-58 (133)
57 2q5w_D Molybdopterin convertin 62.6 4.3 0.00015 33.2 2.7 22 469-492 52-73 (77)
58 2cu3_A Unknown function protei 59.2 7.8 0.00027 30.9 3.6 22 469-492 35-60 (64)
59 1wln_A Afadin; beta sandwich, 57.1 4.6 0.00016 36.2 2.1 24 673-696 80-103 (120)
60 4h87_A Kanadaptin; FHA domain 55.9 7.2 0.00025 35.7 3.2 24 673-696 94-119 (130)
61 3gqs_A Adenylate cyclase-like 55.4 4.3 0.00015 35.5 1.6 24 673-696 69-92 (106)
62 3po8_A RV0020C protein, putati 53.7 5.4 0.00018 34.4 1.9 23 673-696 65-87 (100)
63 2paq_A 5'-deoxynucleotidase YF 52.1 7.5 0.00026 38.2 2.9 18 7-24 57-74 (201)
64 3b57_A LIN1889 protein; Q92AN1 50.1 8.3 0.00028 37.7 2.8 16 11-26 49-64 (209)
65 3hx1_A SLR1951 protein; P74513 49.6 6.9 0.00024 35.8 2.0 23 673-696 82-104 (131)
66 2jqj_A DNA damage response pro 47.6 7.9 0.00027 36.1 2.1 24 673-696 87-111 (151)
67 1p9k_A ORF, hypothetical prote 47.2 7.3 0.00025 32.3 1.6 38 659-696 21-70 (79)
68 2xt9_B Putative signal transdu 46.3 8.7 0.0003 34.0 2.1 23 673-696 73-95 (115)
69 3dto_A BH2835 protein; all alp 45.7 11 0.00036 37.8 2.8 18 7-24 45-62 (223)
70 1c05_A Ribosomal protein S4 de 45.6 11 0.00039 35.7 2.9 25 673-697 76-101 (159)
71 1gxc_A CHK2, CDS1, serine/thre 45.6 9.2 0.00031 35.6 2.2 24 673-696 103-128 (149)
72 1fm0_D Molybdopterin convertin 44.8 12 0.00042 30.6 2.6 22 469-492 56-77 (81)
73 2pie_A E3 ubiquitin-protein li 44.4 13 0.00043 34.2 2.9 24 673-696 75-100 (138)
74 2vqe_D 30S ribosomal protein S 42.8 13 0.00044 37.0 2.9 25 673-697 124-149 (209)
75 2qgs_A Protein Se1688; alpha-h 42.5 22 0.00075 35.1 4.6 19 7-25 46-64 (225)
76 1vjk_A Molybdopterin convertin 42.3 12 0.0004 32.3 2.2 22 469-492 73-94 (98)
77 1lgp_A Cell cycle checkpoint p 42.2 8.3 0.00028 34.1 1.3 25 673-697 68-94 (116)
78 1ndd_A NEDD8, protein (ubiquit 40.5 76 0.0026 24.7 6.8 56 642-697 2-70 (76)
79 2kb3_A Oxoglutarate dehydrogen 40.4 9.8 0.00033 35.4 1.5 23 673-696 108-130 (143)
80 1g6g_A Protein kinase RAD53; b 40.2 13 0.00046 33.4 2.4 24 673-696 79-104 (127)
81 4he6_A Peptidase family U32; u 39.9 35 0.0012 28.8 4.8 36 461-496 10-45 (89)
82 1r21_A Antigen KI-67; beta san 39.4 11 0.00036 34.1 1.6 24 673-696 75-98 (128)
83 3po0_A Small archaeal modifier 38.3 23 0.0008 29.5 3.5 22 469-492 64-85 (89)
84 3els_A PRE-mRNA leakage protei 38.3 11 0.00036 35.8 1.4 24 673-696 117-142 (158)
85 1dmz_A Protein (protein kinase 38.1 9.1 0.00031 36.1 0.9 25 672-696 82-108 (158)
86 2csw_A Ubiquitin ligase protei 37.6 12 0.00042 34.6 1.7 24 673-696 83-108 (145)
87 1mzk_A Kinase associated prote 37.3 12 0.00041 34.4 1.6 24 673-696 76-109 (139)
88 1g3g_A Protien kinase SPK1; FH 36.9 17 0.00059 34.3 2.7 26 671-696 105-132 (164)
89 2pjq_A Uncharacterized protein 36.7 21 0.00073 35.4 3.4 14 11-24 54-67 (231)
90 2pq7_A Predicted HD superfamil 35.9 16 0.00056 35.6 2.4 16 90-105 123-138 (220)
91 3oun_A Putative uncharacterize 35.1 15 0.00051 35.0 1.9 23 673-696 127-149 (157)
92 1qu5_A Protein kinase SPK1; FH 34.9 11 0.00037 36.6 0.9 25 672-696 106-132 (182)
93 1uht_A Expressed protein; FHA 34.8 13 0.00045 32.9 1.4 24 673-696 76-101 (118)
94 2kfu_A RV1827 PThr 22; FHA dom 34.7 15 0.00052 34.9 1.9 23 673-696 117-139 (162)
95 3a9j_A Ubiquitin; protein comp 33.9 1.2E+02 0.004 23.6 6.9 55 643-697 3-70 (76)
96 3bbn_D Ribosomal protein S4; s 32.8 21 0.00071 35.4 2.5 28 670-697 111-139 (201)
97 2eqq_A GBP, growth-blocking pe 32.4 18 0.00062 24.5 1.4 22 531-554 6-27 (28)
98 3elv_A PRE-mRNA leakage protei 32.2 16 0.00054 36.4 1.6 24 673-696 164-189 (205)
99 1rm6_C 4-hydroxybenzoyl-COA re 31.1 38 0.0013 32.1 4.0 40 644-683 5-59 (161)
100 3kt9_A Aprataxin; FHA domain, 30.6 21 0.00071 31.7 1.9 23 675-697 66-90 (102)
101 2g1e_A Hypothetical protein TA 30.4 30 0.001 28.7 2.8 22 469-492 61-86 (90)
102 1frr_A Ferredoxin I; electron 30.1 32 0.0011 28.9 3.0 27 645-671 5-33 (95)
103 1ffv_A CUTS, iron-sulfur prote 29.6 54 0.0018 31.2 4.8 41 643-683 5-60 (163)
104 1n62_A Carbon monoxide dehydro 28.1 50 0.0017 31.6 4.2 40 644-683 6-60 (166)
105 3kh1_A Predicted metal-depende 25.6 29 0.001 34.2 2.2 17 8-24 63-79 (200)
106 3mtn_B UBA80, ubcep1, ubiquiti 25.3 2.2E+02 0.0075 22.6 7.3 56 642-697 5-73 (85)
107 3lxf_A Ferredoxin; iron, iron- 25.2 64 0.0022 27.9 4.1 29 643-671 3-33 (104)
108 1t3q_A Quinoline 2-oxidoreduct 24.7 68 0.0023 30.4 4.5 40 644-683 12-66 (168)
109 3rpf_C Molybdopterin convertin 24.3 50 0.0017 26.7 3.1 23 469-492 48-70 (74)
110 2dzi_A Ubiquitin-like protein 24.3 1.3E+02 0.0046 23.7 5.7 56 642-697 9-77 (81)
111 3va4_A Mediator of DNA damage 24.1 31 0.0011 31.6 1.9 24 673-696 89-116 (132)
112 3ah7_A [2Fe-2S]ferredoxin; [2F 24.1 39 0.0013 29.5 2.5 24 647-670 13-36 (113)
113 1qf6_A THRRS, threonyl-tRNA sy 24.0 26 0.00089 40.2 1.7 46 444-496 14-66 (642)
114 1nyr_A Threonyl-tRNA synthetas 23.9 21 0.00071 40.9 0.9 47 443-496 15-68 (645)
115 3djb_A Hydrolase, HD family; a 23.9 16 0.00053 36.5 -0.2 18 7-24 45-62 (223)
116 3r8n_D 30S ribosomal protein S 23.8 11 0.00036 37.6 -1.4 27 671-697 118-145 (205)
117 1uwm_A Ferredoxin VI, FDVI; el 23.7 54 0.0018 28.2 3.3 27 645-671 4-33 (106)
118 2jpe_A Nuclear inhibitor of pr 23.7 18 0.00061 33.1 0.2 24 673-696 100-125 (140)
119 1xlq_A Putidaredoxin, PDX; [2F 23.6 72 0.0024 27.4 4.1 26 646-671 6-33 (106)
120 2ff4_A Probable regulatory pro 22.9 29 0.00098 37.0 1.6 15 253-267 224-238 (388)
121 1yx5_B Ubiquitin; proteasome, 22.2 2.1E+02 0.0071 23.9 6.7 56 642-697 2-70 (98)
122 2bt6_A Adrenodoxin 1; rutheniu 21.8 70 0.0024 27.6 3.7 25 645-669 11-37 (108)
123 1i7h_A Ferredoxin; 2Fe-2S,elec 21.8 46 0.0016 29.0 2.5 23 648-670 14-36 (111)
124 2kd0_A LRR repeats and ubiquit 21.7 2.2E+02 0.0077 23.3 6.7 59 639-697 10-81 (85)
125 3dwg_C 9.5 kDa culture filtrat 21.2 62 0.0021 27.2 3.1 22 469-492 64-89 (93)
126 3u7z_A Putative metal binding 20.7 77 0.0026 28.0 3.7 44 653-697 25-96 (101)
127 1awd_A Ferredoxin; electron tr 20.6 78 0.0027 26.6 3.6 38 647-684 7-57 (94)
128 2faz_A Ubiquitin-like containi 20.2 2.5E+02 0.0087 22.0 6.6 56 642-697 4-74 (78)
129 1b9r_A Protein (terpredoxin); 20.0 66 0.0023 27.6 3.1 27 645-671 4-33 (105)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=100.00 E-value=2.4e-88 Score=736.05 Aligned_cols=311 Identities=38% Similarity=0.610 Sum_probs=246.1
Q ss_pred CChHHHHHHhhcccccccCCCHHHHHHHhcHHHHHHHHHhhhhhhhhHHHHHHHhhhccCCCcchhhHHHHHHHHhhccC
Q 005392 9 RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVD 88 (698)
Q Consensus 9 ~d~~tIiAALLHDvVEDT~~T~eeI~~~FG~~VA~LV~gvTKl~~i~~~~r~~~rk~~~~~~~~~~qae~lRkmlLam~~ 88 (698)
.|.++++||||||+||||++|.++|++.||++||.||+||||++.+++.. ....|+|++|||||||++
T Consensus 66 ~D~~~i~AALLHDvvEDt~~t~e~I~~~FG~~Va~lV~gvTk~~~~~~~~------------~~~~qae~~Rkmllam~~ 133 (393)
T 1vj7_A 66 LDAVTVACGFLHDVVEDTDITLDNIEFDFGKDVRDIVDGVTKLGKVEYKS------------HEEQLAENHRKMLMAMSK 133 (393)
T ss_dssp CCHHHHHHHHHTTHHHHSSCCHHHHHHHHCHHHHHHHHHHHHHC--------------------------CCSCTTTSCC
T ss_pred CCHHHHHHHHhhhHHhcCCCCHHHHHHHhCHHHHHHHHHHHhcccCCccc------------HHHHHHHHHHHHHHhhcC
Confidence 48899999999999999999999999999999999999999998875421 123589999999999999
Q ss_pred CccEEeehhhhHHhhhhccccCChHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHhhCHHHHHHHHHHHhhccCC
Q 005392 89 DPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 168 (698)
Q Consensus 89 D~RVvlIKLADRLhNmRtl~~~~~ek~~~iA~ETl~IyaPLA~RLGi~~ik~ELEDL~F~~L~P~~y~~i~~~l~~~~~~ 168 (698)
|+||++||||||||||||+..+|+++|+++|+||++|||||||||||++||||||||||+||+|+.|+.|.+.|.+
T Consensus 134 D~RvvlIKLADRlhNmRtl~~~~~ek~~~iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~---- 209 (393)
T 1vj7_A 134 DIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNE---- 209 (393)
T ss_dssp CHHHHHHHHHHHHHHHHTCC------HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH----
T ss_pred CcceeeeeHHHHHHccCchhhCChHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHH----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CcccccccccccccCCCCCccCccCCCCcccchhhhhhhHHhhhhhccccchhhhhHHHHHHHHHHhhhhHHHHHHHHHH
Q 005392 169 RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQ 248 (698)
Q Consensus 169 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~v~~~~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~ 248 (698)
.|.+|+.+++++.
T Consensus 210 ------------------------------------------------------~r~~r~~~i~~i~------------- 222 (393)
T 1vj7_A 210 ------------------------------------------------------KRREREALVDDIV------------- 222 (393)
T ss_dssp ------------------------------------------------------THHHHHHHHHHHH-------------
T ss_pred ------------------------------------------------------HHHHHHHHHHHHH-------------
Confidence 3677888888775
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCceEEEEEeecChhHHHHHHHhcCCCCCcccceeeEEEEEcCCCCCCCCCcH
Q 005392 249 DAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 328 (698)
Q Consensus 249 ~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~V~~R~K~~ySI~~Km~rk~~~~~~I~Di~giRVIv~~~~~~~~~~~~ 328 (698)
..+++.|.+ .|+.+.|+||+|++||||+||+||+.+|++|+|++||||||++ +
T Consensus 223 ---------~~l~~~L~~---------~gi~~~v~~R~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~---------~ 275 (393)
T 1vj7_A 223 ---------TKIKSYTTE---------QGLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMET---------Q 275 (393)
T ss_dssp ---------HHHHHHHHT---------TTCCCEEEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESS---------H
T ss_pred ---------HHHHHHHHh---------cCCceEEEEEeCChHHHHHHHHHhCCChhhhcccceEEEEECC---------H
Confidence 124455554 3778899999999999999999999999999999999999985 8
Q ss_pred HHHHHHHHHHHhcCccccccccccccCCCCCCCceeEEEEEcCCCceEEEEEEecchhhHHHhhhhhhhhccccCCCccc
Q 005392 329 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS 408 (698)
Q Consensus 329 ~dCy~vlgiIh~~~~pi~~~~kDYIa~PK~nGYqSLHt~V~~~~g~~vEIQIRT~~Mh~~AE~G~aAhw~YK~~~~~~~~ 408 (698)
.|||+++|+||+.|+|+|++|||||++||+||||||||+|.+|.| ++||||||..||.|||+||||||+||++......
T Consensus 276 ~dcy~vl~~i~~~~~~~~~~~kDyIa~PK~nGYqSlH~~v~~p~~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~ 354 (393)
T 1vj7_A 276 SDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVN 354 (393)
T ss_dssp HHHHHHHHHHHHHSCBCTTCCEETTTSCCTTCCCCEEEEEECSSS-EEEEEEEEHHHHHHHHHTTCC-------------
T ss_pred HHHHHHHHHHHhcCCCCCCcccccccCCCcCCcceeEEEEEeCCc-eEEEEEecHHHHHHHHhhHHHHhccccCCCcccc
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999986432101
Q ss_pred cccc------ccchHHHhccCCCCCCCC
Q 005392 409 ISSM------DESDIEASSSLSKDTDDH 430 (698)
Q Consensus 409 ~~~~------~~~l~~~~~~~~~~~e~~ 430 (698)
...+ -++|.+|++...++.||+
T Consensus 355 ~~~~~~~~~wl~~ll~~~~~~~~~~ef~ 382 (393)
T 1vj7_A 355 QAEQKVGMNWIKELVELQDASNGDAVDF 382 (393)
T ss_dssp --------CHHHHHHHC-----------
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 1122 234456666666667775
No 2
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=100.00 E-value=6.2e-42 Score=352.70 Aligned_cols=119 Identities=28% Similarity=0.316 Sum_probs=108.9
Q ss_pred cCCCCCceEEEEEeecChhHHHHHHHhcCCCCC----cccceeeEEEEEcCCCCCCCCCcHHHHHHHHHHHHhcCccccc
Q 005392 272 TSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIH----KVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 347 (698)
Q Consensus 272 ~~~~~gi~~~V~~R~K~~ySI~~Km~rk~~~~~----~I~Di~giRVIv~~~~~~~~~~~~~dCy~vlgiIh~~~~pi~~ 347 (698)
..++|.. .|+||+|+++||++||.|++.+++ +|+|++||||||.+ +.|||+++++||+.|.|.|.
T Consensus 66 ~~~~~i~--~V~~RvKs~~SI~~Km~Rk~~~~~~~~~~I~Di~GiRII~~~---------~~D~y~v~~~I~~~~~~~~~ 134 (255)
T 3l9d_A 66 KRHSPIE--FVTGRVKPIESIKEKMVLRGIKKENLTQDMQDIAGLRIMVQF---------VDDVNDVLELLRQRKDMKVI 134 (255)
T ss_dssp TSCCSCC--EEEEEECCHHHHHHHHHHHTCCGGGHHHHCSCSEEEEEEESS---------TTHHHHHHHHHHTCSSSEEE
T ss_pred hccCCcc--eEEeEEcCHHHHHHHHHhcCCCccchhhhccccceEEEEEeC---------HHHHHHHHHHHHhcCCCcee
Confidence 3445543 699999999999999999999987 79999999999995 78999999999999999999
Q ss_pred cccccccCCCCCCCceeEEEEE-------cCCCceEEEEEEecchhhHHHhhhhhhhhccc
Q 005392 348 EFDDYIVNPKPSGYQSLHTAVQ-------GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 401 (698)
Q Consensus 348 ~~kDYIa~PK~nGYqSLHt~V~-------~~~g~~vEIQIRT~~Mh~~AE~G~aAhw~YK~ 401 (698)
++||||++||+|||||||++|. ++.|.++||||||.+||.|||+||++||+|+.
T Consensus 135 ~~KDYIa~PK~nGYrSlH~iv~~p~~~~~g~~~~~vEIQIRT~~Mh~WAeieH~~~YK~~~ 195 (255)
T 3l9d_A 135 QERDYINNLKPSGYRSYHVIVEYPVDTISGQRIIMAEIQIRTLAMNFWATIEHSLNYKYHG 195 (255)
T ss_dssp EEEEESCC-CCCSCCEEEEEEEEEEEETTEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHTT
T ss_pred eeeccccCCCCCCceeEEEEEEcccccccCCCceEEEEEECCHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998 55688999999999999999999999999985
No 3
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=100.00 E-value=4e-38 Score=320.09 Aligned_cols=170 Identities=25% Similarity=0.289 Sum_probs=131.4
Q ss_pred HHHHHHHhhccCCCCCceEEEEEeecChhHHHHHHHhcCCCCC----cccceeeEEEEEcCCCCCCCCCcHHHHHHHHHH
Q 005392 262 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIH----KVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 337 (698)
Q Consensus 262 ~~L~~~~~~~~~~~~gi~~~V~~R~K~~ySI~~Km~rk~~~~~----~I~Di~giRVIv~~~~~~~~~~~~~dCy~vlgi 337 (698)
+.|.+++.....++|. ..|+||+|+++||++||.|++.+++ +|+|++||||||++ +.|||+++++
T Consensus 27 ~~l~~~~~~~~~~~~i--~~v~~RvK~~~Si~~K~~rk~~~~~~~~~~i~Di~GiRIi~~~---------~~d~y~v~~~ 95 (226)
T 2be3_A 27 RGIRKQYRKQNKHSPI--EFVTGRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQF---------VDDVKEVVDI 95 (226)
T ss_dssp HHHHHHHHHTTCCCSE--EEEEEEECCHHHHHHHHHHHTCCTTTHHHHCTTSEEEEEEESC---------GGGHHHHHHH
T ss_pred HHHHHHHHHhhCCCCc--ceEEeeCCCHHHHHHHHHhhCCCcccchhhccccceEEEEEcC---------HHHHHHHHHH
Confidence 3455555444444433 3599999999999999999999998 99999999999985 7899999999
Q ss_pred HHhcCccccccccccccCCCCCCCceeEEEEE-------cCCCceEEEEEEecchhhHHHhhhhhhhhccccCCCc--cc
Q 005392 338 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ-------GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL--QS 408 (698)
Q Consensus 338 Ih~~~~pi~~~~kDYIa~PK~nGYqSLHt~V~-------~~~g~~vEIQIRT~~Mh~~AE~G~aAhw~YK~~~~~~--~~ 408 (698)
||+.|.|.|.++||||++||+|||||||++|. ++.|.++||||||..||.|||+||++||+||++.... ..
T Consensus 96 i~~~~~~~~~~~kDyI~~PK~nGYrSlH~~v~~p~~~~~g~~~~~vEIQIRT~~m~~wAe~eh~~~YK~~~~~~~~~~~~ 175 (226)
T 2be3_A 96 LHKRQDMRIIQERDYITHRKASGYRSYHVVVEYTVDTINGAKTILAEIQIRTLAMNFWATIEHSLNYKYQGDFPDEIKKR 175 (226)
T ss_dssp HHTCSSEEEEEEEETTTTCCTTSCCCEEEEEEEEECCTTCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHhccCCceeeecchhhcCCCCCceEEEEEEEcccccccCCCCcEEEEEEeeHHHHHHHHHhHHHHcCCcCCCcHHHHHH
Confidence 99999999999999999999999999999997 5678899999999999999999999999999643211 00
Q ss_pred -------ccccccchHHHhccCCCCCCCCCccccccccccc
Q 005392 409 -------ISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYS 442 (698)
Q Consensus 409 -------~~~~~~~l~~~~~~~~~~~e~~~~~~~~~ftp~g 442 (698)
...+++++.++++.+.++.+|++.++.++|...|
T Consensus 176 l~~~a~~~~~~d~~m~~i~~~i~~~~~~~~~~~~~~~~~~~ 216 (226)
T 2be3_A 176 LEITARIAHQLDEEMGEIRDDIQEAQALFDPLSRKLNDGVG 216 (226)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHhhhcc
Confidence 1123345566666666778888888888875443
No 4
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=99.86 E-value=1.5e-22 Score=198.96 Aligned_cols=126 Identities=24% Similarity=0.302 Sum_probs=103.9
Q ss_pred CCCCChHHHHHHhhcccccccCCCHHHHHHHhcHHHHHHHHHhhhhhhhhHHHHHHHhhhccCCCcchhhHHHHHHHHhh
Q 005392 6 SGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLG 85 (698)
Q Consensus 6 ~g~~d~~tIiAALLHDvVEDT~~T~eeI~~~FG~~VA~LV~gvTKl~~i~~~~r~~~rk~~~~~~~~~~qae~lRkmlLa 85 (698)
.|..|.++++||||||+||||.+|.++|++.||++|+.||+||||++.+++..+ ...|++++|+
T Consensus 48 l~~~D~~~i~AAlLHDvvEDt~~t~e~i~~~FG~~Va~lV~gvtk~~~~~~~~~------------~~~q~e~~r~---- 111 (179)
T 3nqw_A 48 ACITDEGVLMAALLHDVVEDTDASFEDVEKLFGPDVCGLVREVTDDKSLEKQER------------KRLQIENAAK---- 111 (179)
T ss_dssp TCCCCHHHHHHHHTTTHHHHSSCCHHHHHHHHCHHHHHHHHHTCCCTTSCHHHH------------HHHHHHSSTT----
T ss_pred cCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHCHHHHHHHHHHHhccccCHHHH------------HHHHHHHHHh----
Confidence 455689999999999999999999999999999999999999999988765321 1346788875
Q ss_pred ccCCccEEeehhhhHHhhhhccccCChHHH-HHHHHHHHHHHHHHHHHh--CchHHHHHHHHHHHHh
Q 005392 86 MVDDPRVVLIKLADRLHNMRTIYALPPAKA-RAVAQETLLIWCSLASRL--GLWALKAELEDLCFAV 149 (698)
Q Consensus 86 m~~D~RVvlIKLADRLhNmRtl~~~~~ek~-~~iA~ETl~IyaPLA~RL--Gi~~ik~ELEDL~F~~ 149 (698)
.|+||++||||||+||||++..++++++ ..-+++-+..+.++++.| |=..+..+|.++.=+|
T Consensus 112 --~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~~v~~~l~~~n~~l~~~~~~~~~~~ 176 (179)
T 3nqw_A 112 --SSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVWAKKVVDNLRGTNANLELKLDEIFRQR 176 (179)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 7999999999999999999998876653 334567777788888888 4557888888877655
No 5
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=99.83 E-value=2.4e-21 Score=190.33 Aligned_cols=122 Identities=25% Similarity=0.353 Sum_probs=93.3
Q ss_pred CCCCCChHHHHHHhhcccccccCCCHHHHHHHhcHHHHHHHHHhhhhhhhhHHHHHHHhhhccCCCcchhhHHHHHHHHh
Q 005392 5 SSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLL 84 (698)
Q Consensus 5 ~~g~~d~~tIiAALLHDvVEDT~~T~eeI~~~FG~~VA~LV~gvTKl~~i~~~~r~~~rk~~~~~~~~~~qae~lRkmlL 84 (698)
..|..|+++++||||||+||||.+|.++|++.||++|+.+|+||||++.+++..+ ...|++++|
T Consensus 45 ~~~~~d~~~i~AALLHDvvEDt~~t~e~i~~~FG~~Va~lV~gvTk~~~~~~~~~------------~~~q~e~~~---- 108 (178)
T 3nr1_A 45 EAGITDIVVLQAALLHDTVEDTDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLER------------KRLQVEQAP---- 108 (178)
T ss_dssp TSCCCCHHHHHHHHHTTHHHHSSCCHHHHHHHHHHHHHHHHHHTCCCTTSCHHHH------------HHHHHHHGG----
T ss_pred HcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHCHHHHHHHHHHHhccccchhhH------------HHHHHHHHH----
Confidence 3455689999999999999999999999999999999999999999988765321 124677765
Q ss_pred hccCCccEEeehhhhHHhhhhccccCChHH-----HHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Q 005392 85 GMVDDPRVVLIKLADRLHNMRTIYALPPAK-----ARAVAQETLLIWCSLASRLGLWALKAELEDLC 146 (698)
Q Consensus 85 am~~D~RVvlIKLADRLhNmRtl~~~~~ek-----~~~iA~ETl~IyaPLA~RLGi~~ik~ELEDL~ 146 (698)
.+|+||++|||||||||||++..++|+. ..+|-.|.-.|..-|.+ +=..+...|++++
T Consensus 109 --~~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~~v~~~l~~--~~~~l~~~~~~~~ 171 (178)
T 3nr1_A 109 --HSSPGAKLVKLADKLYNLRDLNRCTPEGWSEHRVQEYFEWAAQVVKGLQG--TNRQLEEALKHLF 171 (178)
T ss_dssp --GSCHHHHHHHHHHHHHHHHHHHHCCCTTCCHHHHHHHHHHHHHHHHHHCS--SCHHHHHHHHHHH
T ss_pred --hCCchhHHHHHHHHHHHHHHhhhCCccccCHHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHH
Confidence 5899999999999999999998776544 45677777666654322 2234555555443
No 6
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=99.73 E-value=1.5e-18 Score=148.97 Aligned_cols=62 Identities=29% Similarity=0.487 Sum_probs=55.6
Q ss_pred CCCCcEEEEEccCCCeEecCCCCCHHHHHHHhC--CCCce--EEEcCEeeCCCCcCCCCCEEEEeC
Q 005392 637 VVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL--VLVNGQLVLPNTELKDGDIVEVRV 698 (698)
Q Consensus 637 ~l~~~~v~vftp~G~~~~l~~g~T~~d~a~~i~--~~~~~--~~vNg~~v~l~~~L~~Gd~v~i~~ 698 (698)
||+.++||||||+|+++.||+|+||.||||+|| ++.+| |+|||++|+|+++|++||+|||+|
T Consensus 2 ~l~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIit 67 (78)
T 3hvz_A 2 DLAPEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLT 67 (78)
T ss_dssp ----CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEETTEEECTTCBCCTTCBEEEEE
T ss_pred CCcCceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEECCEEcCCCcccCCCCEEEEEc
Confidence 578999999999999999999999999999999 77765 899999999999999999999986
No 7
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.12 E-value=6.8e-11 Score=104.17 Aligned_cols=58 Identities=31% Similarity=0.442 Sum_probs=50.9
Q ss_pred cEEEEEc-cCCCe------Eec-CCCCCHHHHHHHhC--CCCce--EEE-------cCEeeCCCCcCCCCCEEEEeC
Q 005392 641 EVVIVCW-PNGEI------MRL-RSGSTAADAAMKVG--LEGKL--VLV-------NGQLVLPNTELKDGDIVEVRV 698 (698)
Q Consensus 641 ~~v~vft-p~G~~------~~l-~~g~T~~d~a~~i~--~~~~~--~~v-------Ng~~v~l~~~L~~Gd~v~i~~ 698 (698)
+-|.||| |+|+. +.| |.|+|+.||||+|| ++..+ |.| ||+.|+|+++|+|||+|+|++
T Consensus 10 ~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~ 86 (93)
T 2eki_A 10 KLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVK 86 (93)
T ss_dssp CEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEE
T ss_pred CeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEEe
Confidence 4577999 88885 889 99999999999999 77754 555 999999999999999999975
No 8
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=98.99 E-value=4.1e-10 Score=93.75 Aligned_cols=56 Identities=43% Similarity=0.478 Sum_probs=50.8
Q ss_pred EEEEccCCCeEecCCCCCHHHHHHHhC--CCCce--EEEcCEeeCCCCcCCCCCEEEEeC
Q 005392 643 VIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL--VLVNGQLVLPNTELKDGDIVEVRV 698 (698)
Q Consensus 643 v~vftp~G~~~~l~~g~T~~d~a~~i~--~~~~~--~~vNg~~v~l~~~L~~Gd~v~i~~ 698 (698)
+.|+.|+|+.+.+|.|+|+.|+|+.++ ++..+ ++|||++++|+++|++||.|+|+|
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veivt 62 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLS 62 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEEE
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHHhhccccceEEEEECCEEeCCCcCcCCCCEEEEEE
Confidence 678999999999999999999999997 44443 799999999999999999999986
No 9
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.90 E-value=3e-10 Score=97.37 Aligned_cols=52 Identities=21% Similarity=0.426 Sum_probs=46.7
Q ss_pred cccccccc---CCCCCceeee-------cCCceeeeEEEEEccCCeeEEEecccccCCCCeEEEcCCCC
Q 005392 436 DLFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 494 (698)
Q Consensus 436 ~~ftp~g~---lp~g~~v~t~-------iG~~c~gAkV~~v~~ngr~l~v~l~~~L~~gD~Vei~T~~~ 494 (698)
.+|||+|+ ||.|+|+.++ +|++|+|||| ||+ +|+|+++|++||+|||+|+++
T Consensus 9 ~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkV-----NG~--~v~L~~~L~~gd~VeIit~~~ 70 (78)
T 3hvz_A 9 FVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKV-----DGR--IVPIDYKVKTGEIIDVLTTKE 70 (78)
T ss_dssp EEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEE-----TTE--EECTTCBCCTTCBEEEEECC-
T ss_pred EEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEE-----CCE--EcCCCcccCCCCEEEEEccCc
Confidence 57999995 7999996655 8999999999 999 999999999999999999985
No 10
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=98.67 E-value=4.2e-08 Score=84.89 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=52.5
Q ss_pred CcEEEEEccCCCeEecCC-CCCHHHHHHHhC--CCCce--EEEcCEeeCCCCcCCCCCEEEEeC
Q 005392 640 GEVVIVCWPNGEIMRLRS-GSTAADAAMKVG--LEGKL--VLVNGQLVLPNTELKDGDIVEVRV 698 (698)
Q Consensus 640 ~~~v~vftp~G~~~~l~~-g~T~~d~a~~i~--~~~~~--~~vNg~~v~l~~~L~~Gd~v~i~~ 698 (698)
...+.|..|+|++..+|. |+|+.|||+.+| ++.++ ++|||++++|+++|.+|+.|+|+|
T Consensus 9 ~~~i~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~d~~ve~vt 72 (88)
T 1wwt_A 9 SKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLK 72 (88)
T ss_dssp CCEEEEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSSEECSSSCCCSSEEEEECS
T ss_pred CCCEEEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCEEECCCcCcCCCCEEEEEe
Confidence 355668889999999998 999999999997 55544 799999999999999999999987
No 11
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.43 E-value=9.6e-08 Score=104.18 Aligned_cols=58 Identities=28% Similarity=0.304 Sum_probs=52.3
Q ss_pred cEEEEEc---------cCC----CeEecCCCCCHHHHHHHhC--CCCce--E--EEcCEeeCCCCcCCCCCEEEEeC
Q 005392 641 EVVIVCW---------PNG----EIMRLRSGSTAADAAMKVG--LEGKL--V--LVNGQLVLPNTELKDGDIVEVRV 698 (698)
Q Consensus 641 ~~v~vft---------p~G----~~~~l~~g~T~~d~a~~i~--~~~~~--~--~vNg~~v~l~~~L~~Gd~v~i~~ 698 (698)
.-++||| |+| +.+.||.|+||.||||+|| ++.++ | .+||+.|+++|+|+|||+|+|+|
T Consensus 318 ~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~~~~~~~~~g~~~~l~dgDvv~i~~ 394 (397)
T 1wxq_A 318 KLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVS 394 (397)
T ss_dssp CEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEEETTTCSBCCTTCCCCTTEEEEEEE
T ss_pred CCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhHHhcCCEEcCCCccccCCCEEEEEe
Confidence 4567899 999 9999999999999999999 77765 4 56999999999999999999986
No 12
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=97.99 E-value=4.6e-06 Score=70.59 Aligned_cols=53 Identities=26% Similarity=0.234 Sum_probs=44.4
Q ss_pred EEccCCCeEecCCCCCHHHHHHHhCCCCc--eEEEcCEeeCCCCcCCCCCEEEEeC
Q 005392 645 VCWPNGEIMRLRSGSTAADAAMKVGLEGK--LVLVNGQLVLPNTELKDGDIVEVRV 698 (698)
Q Consensus 645 vftp~G~~~~l~~g~T~~d~a~~i~~~~~--~~~vNg~~v~l~~~L~~Gd~v~i~~ 698 (698)
+|.-+...+++|+|+|+.|+...++++.. .+.|||+.||.+..+. ||+|+|++
T Consensus 7 l~g~~~~~~ev~~g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~~l~-GD~VeIv~ 61 (74)
T 2l32_A 7 VVGEETSEVAVDDDGTYADLVRAVDLSPHEVTVLVDGRPVPEDQSVE-VDRVKVLR 61 (74)
T ss_dssp CSSSSEEEEECSTTCSHHHHHHTTCCCSSCCCEECCCCCCCTTSSSC-CCCEEECS
T ss_pred EeCccceeEEcCCCCcHHHHHHHcCCCcceEEEEECCEECCHHHCCC-CCEEEEEE
Confidence 34333345899999999999999998874 4899999999999886 99999975
No 13
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=97.93 E-value=3.2e-06 Score=75.28 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=40.6
Q ss_pred EecCCCCCHHHHHHHhCCCC---------ceEEEcCEeeCCCCcCCCCCEEEEeC
Q 005392 653 MRLRSGSTAADAAMKVGLEG---------KLVLVNGQLVLPNTELKDGDIVEVRV 698 (698)
Q Consensus 653 ~~l~~g~T~~d~a~~i~~~~---------~~~~vNg~~v~l~~~L~~Gd~v~i~~ 698 (698)
+.+|.|+|+.|+..++|+.. ..+-|||+.|++++.|++||+|||..
T Consensus 30 ~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 30 FQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTCBCCTTCEEEECC
T ss_pred EEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCccCCCCCEEEEEe
Confidence 57899999999999999533 34899999999999999999999963
No 14
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=97.89 E-value=7.2e-06 Score=69.50 Aligned_cols=53 Identities=34% Similarity=0.471 Sum_probs=47.0
Q ss_pred EccCCCeEecCCCCCHHHHHHHhCCCCc--eEEEcCEeeCCCCcCCCCCEEEEeC
Q 005392 646 CWPNGEIMRLRSGSTAADAAMKVGLEGK--LVLVNGQLVLPNTELKDGDIVEVRV 698 (698)
Q Consensus 646 ftp~G~~~~l~~g~T~~d~a~~i~~~~~--~~~vNg~~v~l~~~L~~Gd~v~i~~ 698 (698)
+..+|+.+.+|.|+|+.|+...++++.. .+.|||+.+|.+++|++||+|+|+.
T Consensus 18 ~~~n~~~~~~~~~~Tv~dLl~~L~~~~~~v~VavNg~~v~~~~~L~dGD~V~i~p 72 (77)
T 1rws_A 18 GRNIEKEIEWREGMKVRDILRAVGFNTESAIAKVNGKVVLEDDEVKDGDFVEVIP 72 (77)
T ss_dssp TCCCCCCCCCCSSCCHHHHHHTTTCSSCSSCEEETTEEECSSSCCCSSCCCBCSC
T ss_pred cccCCEEEECCCCCcHHHHHHHhCCCCcCEEEEECCEECCCCCCcCCCCEEEEEc
Confidence 3568888999999999999999997653 3899999999999999999999874
No 15
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=97.79 E-value=1.8e-05 Score=64.89 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=46.1
Q ss_pred ccCCCeEecCCCCCHHHHHHHhCCCCc-e-EEEcCEeeCC----CCcCCCCCEEEEeC
Q 005392 647 WPNGEIMRLRSGSTAADAAMKVGLEGK-L-VLVNGQLVLP----NTELKDGDIVEVRV 698 (698)
Q Consensus 647 tp~G~~~~l~~g~T~~d~a~~i~~~~~-~-~~vNg~~v~l----~~~L~~Gd~v~i~~ 698 (698)
+=||+.+.+|.|+|+.|+...+++... + +.|||+.+|. +++|++||.|+|++
T Consensus 4 ~vNg~~~~~~~~~tv~~ll~~l~~~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 4 LFNDQAMQCAAGQTVHELLEQLDQRQAGAALAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp EESSCEECCCTTCCHHHHHHHHTCCCSSEEEEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred EECCEEEEcCCCCcHHHHHHHcCCCCCCEEEEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 448999999999999999999996653 3 7999999998 89999999999974
No 16
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=97.79 E-value=1.5e-05 Score=67.99 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=46.8
Q ss_pred ccCCCeEecC--CCCCHHHHHHHhCCC-Cc-e-EEEcCEeeCCC----CcCCCCCEEEEeC
Q 005392 647 WPNGEIMRLR--SGSTAADAAMKVGLE-GK-L-VLVNGQLVLPN----TELKDGDIVEVRV 698 (698)
Q Consensus 647 tp~G~~~~l~--~g~T~~d~a~~i~~~-~~-~-~~vNg~~v~l~----~~L~~Gd~v~i~~ 698 (698)
+=||+.+.+| .|+|+.|+...++++ .. + +.|||.+||-+ +.|++||+|||++
T Consensus 4 ~vNGe~~e~~~~~~~Tl~~LL~~l~~~~~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 4 TVNGKPSTVDGAESLNVTELLSALKVAQAEYVTVELNGEVLEREAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp EETTEEEECSSCSCEEHHHHHHHHTCSCTTTCCEEETTEECCTTHHHHCEECSSBCEEECC
T ss_pred EECCEEEEcCCCCCCcHHHHHHHcCCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEe
Confidence 4489999999 999999999999987 53 3 79999999997 9999999999985
No 17
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=97.72 E-value=2.5e-05 Score=65.86 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=45.3
Q ss_pred ccCCCeEecCCCCCHHHHHHHhCCCCc-e-EEEcCEeeCCC----CcCCCCCEEEEeC
Q 005392 647 WPNGEIMRLRSGSTAADAAMKVGLEGK-L-VLVNGQLVLPN----TELKDGDIVEVRV 698 (698)
Q Consensus 647 tp~G~~~~l~~g~T~~d~a~~i~~~~~-~-~~vNg~~v~l~----~~L~~Gd~v~i~~ 698 (698)
+=||+.+.+ .|.|+.|+...++++.. + +.|||.+||-+ +.|++||+|||++
T Consensus 4 ~vNG~~~e~-~~~Tl~~LL~~l~~~~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 4 TINGEQREV-QSASVAALMTELDCTGGHFAVALNYDVVPRGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp EETTEEECC-CCSBHHHHHHHTTCCSSSCEEEESSSEECHHHHTTCBCCTTCEEEEEC
T ss_pred EECCEEEEc-CCCcHHHHHHHcCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEc
Confidence 347999999 99999999999997774 3 79999999994 8999999999985
No 18
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=97.72 E-value=3.5e-05 Score=67.26 Aligned_cols=53 Identities=26% Similarity=0.317 Sum_probs=47.2
Q ss_pred EccCCCeEecCCC-CCHHHHHHHhCCCCc--eEEEcCEeeCC----CCcCCCCCEEEEeC
Q 005392 646 CWPNGEIMRLRSG-STAADAAMKVGLEGK--LVLVNGQLVLP----NTELKDGDIVEVRV 698 (698)
Q Consensus 646 ftp~G~~~~l~~g-~T~~d~a~~i~~~~~--~~~vNg~~v~l----~~~L~~Gd~v~i~~ 698 (698)
++=||+.+.+|.| +|+.|+...+++... .+.|||++||. +++|++||+|+|++
T Consensus 23 I~vNGe~~el~~~~~Tv~dLL~~L~~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 23 LQLNGKDVKWKKDTGTIQDLLASYQLENKIVIVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp EEETTEEECCSSSCCBHHHHHHHTTCTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred EEECCEEEECCCCCCcHHHHHHHhCCCCCCEEEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 5669999999998 999999999997664 37999999998 79999999999974
No 19
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=97.60 E-value=4.8e-05 Score=63.26 Aligned_cols=50 Identities=26% Similarity=0.313 Sum_probs=44.3
Q ss_pred CCCe----EecCCCCCHHHHHHHhCCCCc--eEEEcCEeeCCCCcCCCCCEEEEeC
Q 005392 649 NGEI----MRLRSGSTAADAAMKVGLEGK--LVLVNGQLVLPNTELKDGDIVEVRV 698 (698)
Q Consensus 649 ~G~~----~~l~~g~T~~d~a~~i~~~~~--~~~vNg~~v~l~~~L~~Gd~v~i~~ 698 (698)
||+. +.+|.|.|+.|+...+++... .+.|||.++|.+++|++||.|+|++
T Consensus 10 Ng~~~~~~~~~~~~~tv~~Ll~~l~~~~~~v~vavN~~~v~~~~~L~~gD~V~ii~ 65 (70)
T 1ryj_A 10 ITDDGKKILESGAPRRIKDVLGELEIPIETVVVKKNGQIVIDEEEIFDGDIIEVIR 65 (70)
T ss_dssp EETTEEEEEEESSCCBHHHHHHHTTCCTTTEEEEETTEECCTTSBCCTTCEEEEEE
T ss_pred eCccCceeEECCCCCcHHHHHHHhCCCCCCEEEEECCEECCCcccCCCCCEEEEEe
Confidence 5666 999999999999999996653 3799999999999999999999974
No 20
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=97.59 E-value=6.1e-05 Score=61.45 Aligned_cols=51 Identities=41% Similarity=0.610 Sum_probs=44.7
Q ss_pred ccCCCeEecCCCCCHHHHHHHhCCCCc-e-EEEcCEeeCCC----CcCCCCCEEEEeC
Q 005392 647 WPNGEIMRLRSGSTAADAAMKVGLEGK-L-VLVNGQLVLPN----TELKDGDIVEVRV 698 (698)
Q Consensus 647 tp~G~~~~l~~g~T~~d~a~~i~~~~~-~-~~vNg~~v~l~----~~L~~Gd~v~i~~ 698 (698)
+=||+-+.+ .|+|+.|+...+++... + +.|||+++|.+ ++|++||.|+|++
T Consensus 3 ~vNg~~~~~-~~~tv~~ll~~l~~~~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 3 WLNGEPRPL-EGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp EETTEEECC-TTCCHHHHHHHHTBCGGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEE
T ss_pred EECCEEEEc-CCCcHHHHHHHcCCCCCcEEEEECCEECCccccCCcCCCCCCEEEEEe
Confidence 348999999 99999999999997663 3 79999999976 9999999999974
No 21
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=97.56 E-value=2.8e-05 Score=68.53 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=45.8
Q ss_pred ccc-cccc---------C-CCCCc-------eeeecCCceeeeEEEE--EccCCeeEEEecccccCCCCeEEEcCCCCcc
Q 005392 437 LFQ-KYSS---------L-KMGHP-------VIRVEGSNLLAAVIIR--VEKGGRELLVAVSFGLAASEVVADRRPSFQI 496 (698)
Q Consensus 437 ~ft-p~g~---------l-p~g~~-------v~t~iG~~c~gAkV~~--v~~ngr~l~v~l~~~L~~gD~Vei~T~~~p~ 496 (698)
+|| |+|. | |.|+| ||+.+|++|..|.|-. +..||+ -|+++++|++||+|+|++.++|.
T Consensus 14 VYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~q--rVgldh~L~d~DVV~Iv~~~~~~ 91 (93)
T 2eki_A 14 IYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQ--KVGKDHTLEDEDVIQIVKKSGPS 91 (93)
T ss_dssp EEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSE--EECSSCCCCSSEEECEEECCSCC
T ss_pred EEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCE--ECCCCcEecCCCEEEEEeCCCCC
Confidence 566 6773 5 88988 6666999999988622 234788 79999999999999999987654
No 22
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=97.19 E-value=0.00012 Score=60.51 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=43.6
Q ss_pred cccccccc---CCCCCceeee-------cCCceeeeEEEEEccCCeeEEEecccccCCCCeEEEcCCCC
Q 005392 436 DLFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 494 (698)
Q Consensus 436 ~~ftp~g~---lp~g~~v~t~-------iG~~c~gAkV~~v~~ngr~l~v~l~~~L~~gD~Vei~T~~~ 494 (698)
.++.|.|. +|.|.|+.++ ++.++++|+| ||+ ++++++.|+.||.|+++|...
T Consensus 4 ~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~v-----Ng~--lvdl~~~L~~~~~Veivt~~~ 65 (73)
T 2kmm_A 4 MVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKV-----NHK--LVPLSYVLNSGDQVEVLSSKS 65 (73)
T ss_dssp EEECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEE-----TTE--ECCTTCBCCSSSBEEEEECCC
T ss_pred EEEcCCCCEEEcCCCCcHHHHHHHHhhccccceEEEEE-----CCE--EeCCCcCcCCCCEEEEEECCC
Confidence 45667774 7999887765 4578999999 999 999999999999999999875
No 23
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=97.08 E-value=0.00034 Score=58.44 Aligned_cols=48 Identities=21% Similarity=0.106 Sum_probs=40.2
Q ss_pred CeEecCCCCCHHHHHHHhCCC-----Cc--eEEEcCEeeCCCCcCCCCCEEEEeC
Q 005392 651 EIMRLRSGSTAADAAMKVGLE-----GK--LVLVNGQLVLPNTELKDGDIVEVRV 698 (698)
Q Consensus 651 ~~~~l~~g~T~~d~a~~i~~~-----~~--~~~vNg~~v~l~~~L~~Gd~v~i~~ 698 (698)
+.+.+|.|+|+.|+...++.. .- .+.|||+.++.+++|++||.|+|+.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIP 72 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECTTSEECTTCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHCcchhcceEEEEECCEECCCCCCcCCCCEEEEEC
Confidence 346789999999999988632 22 4899999999999999999999973
No 24
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=96.93 E-value=0.00053 Score=60.36 Aligned_cols=48 Identities=33% Similarity=0.457 Sum_probs=40.3
Q ss_pred CeEecCCCCCHHHHHHHhCCC----------------Cce-EEEcCEeeCCCCcCCCCCEEEEeC
Q 005392 651 EIMRLRSGSTAADAAMKVGLE----------------GKL-VLVNGQLVLPNTELKDGDIVEVRV 698 (698)
Q Consensus 651 ~~~~l~~g~T~~d~a~~i~~~----------------~~~-~~vNg~~v~l~~~L~~Gd~v~i~~ 698 (698)
+.+++|.|+|+.|+...+... ..+ +.|||+.++++++|++||.|+|+.
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVFP 93 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 456788999999999888621 333 899999999999999999999973
No 25
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=96.87 E-value=0.001 Score=57.19 Aligned_cols=46 Identities=20% Similarity=0.128 Sum_probs=39.1
Q ss_pred eEecCCCCCHHHHHHHhC--CC---------------CceEEEcCEeeCCCCcCCCCCEEEEe
Q 005392 652 IMRLRSGSTAADAAMKVG--LE---------------GKLVLVNGQLVLPNTELKDGDIVEVR 697 (698)
Q Consensus 652 ~~~l~~g~T~~d~a~~i~--~~---------------~~~~~vNg~~v~l~~~L~~Gd~v~i~ 697 (698)
.+.+|.|+|+.|+..++. .+ ...+.|||+.++++++|++||.|.|+
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~gDeV~i~ 83 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGDELALF 83 (89)
T ss_dssp EEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCTTCEEEEE
T ss_pred EEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCCCCEEEEE
Confidence 468899999999998886 11 12489999999999999999999987
No 26
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=96.77 E-value=0.00062 Score=58.50 Aligned_cols=54 Identities=6% Similarity=-0.084 Sum_probs=44.0
Q ss_pred ccccccccC---CC-CCceeee-------cCCceeeeEEEEEccCCeeEEEecccccCCCCeEEEcCCCCcc
Q 005392 436 DLFQKYSSL---KM-GHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQI 496 (698)
Q Consensus 436 ~~ftp~g~l---p~-g~~v~t~-------iG~~c~gAkV~~v~~ngr~l~v~l~~~L~~gD~Vei~T~~~p~ 496 (698)
.+.-|.|.. |. |.|+.++ ++.+|++|+| ||+ +++|+++|+.|+.|+++|.+.|.
T Consensus 13 ~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakv-----Ng~--l~dL~~~l~~d~~ve~vt~~~~e 77 (88)
T 1wwt_A 13 KVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKV-----NNV--VWDLDRPLEEDCTLELLKFEDEE 77 (88)
T ss_dssp EEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEE-----SSS--EECSSSCCCSSEEEEECSSCCSC
T ss_pred EEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEE-----CCE--EECCCcCcCCCCEEEEEeCCCHH
Confidence 345567754 76 8776554 6789999999 999 99999999999999999998643
No 27
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=96.53 E-value=0.0031 Score=52.95 Aligned_cols=42 Identities=26% Similarity=0.195 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHhCCC-----------CceEEEcCEeeCCCCcCCCCCEEEEe
Q 005392 656 RSGSTAADAAMKVGLE-----------GKLVLVNGQLVLPNTELKDGDIVEVR 697 (698)
Q Consensus 656 ~~g~T~~d~a~~i~~~-----------~~~~~vNg~~v~l~~~L~~Gd~v~i~ 697 (698)
|.|+|+.|+...+... ...+.|||+.++++++|++||.|.|+
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFF 75 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCTTCEEEEE
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCCCCCCEEEEe
Confidence 6899999999988622 12489999999999999999999997
No 28
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.11 E-value=0.00072 Score=73.64 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=37.2
Q ss_pred CCCCCc-------eeeecCCceeeeEEEEEccCCeeEEEecccccCCCCeEEEcCCC
Q 005392 444 LKMGHP-------VIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 493 (698)
Q Consensus 444 lp~g~~-------v~t~iG~~c~gAkV~~v~~ngr~l~v~l~~~L~~gD~Vei~T~~ 493 (698)
||.|+| ||+.+|++|++|.- ..||+ .|+++|.|++||+|+|+|++
T Consensus 345 l~~G~t~~d~a~~iH~d~~~~f~~a~~---~~~~~--~~g~~~~l~dgDvv~i~~~~ 396 (397)
T 1wxq_A 345 MKKGSTPRDLAFKVHTDLGKGFLYAIN---ARTKR--RVGEDYELQFNDIVKIVSVT 396 (397)
T ss_dssp EETTCCHHHHHHHHCHHHHHTEEEEEE---TTTCS--BCCTTCCCCTTEEEEEEEC-
T ss_pred eCCCCCHHHHHHHHhHHHHhhhhhhHH---hcCCE--EcCCCccccCCCEEEEEeCC
Confidence 688977 78889999999931 12777 68999999999999999875
No 29
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=96.03 E-value=0.002 Score=64.58 Aligned_cols=52 Identities=12% Similarity=0.030 Sum_probs=44.8
Q ss_pred ccccccc---CCCCCceeee-------cCCceeeeEEEEEccCCeeEEEecccccCCCCeEEEcCCCCc
Q 005392 437 LFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 495 (698)
Q Consensus 437 ~ftp~g~---lp~g~~v~t~-------iG~~c~gAkV~~v~~ngr~l~v~l~~~L~~gD~Vei~T~~~p 495 (698)
+.+|.|. +|.|.|+.++ ++++|++|+| ||+ +++|+++|++|+.|+++|.+.+
T Consensus 4 I~~p~G~~~~~~~g~T~~dia~~i~~~l~~~~vaakv-----Ng~--l~dL~~~l~~~~~ve~it~~~~ 65 (224)
T 1tke_A 4 ITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRV-----NGE--LVDACDLIENDAQLSIITAKDE 65 (224)
T ss_dssp EECTTSCEEECSSCBCHHHHHHHHCHHHHHHCCEEEE-----TTE--EEETTCCBCSCEEEEEECTTSH
T ss_pred EEeCCCCEEEecCCCCHHHHHHHHhhhcccceEEEEE-----CCE--EeccceEcCCCCeEEEEecCch
Confidence 4567774 7999886655 6789999999 999 9999999999999999999864
No 30
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=95.94 E-value=0.0095 Score=50.83 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=38.5
Q ss_pred eEecCCCCCHHHHHHHhCCC----------------C-ceEEEcCEeeC----CCCcCCCCCEEEEeC
Q 005392 652 IMRLRSGSTAADAAMKVGLE----------------G-KLVLVNGQLVL----PNTELKDGDIVEVRV 698 (698)
Q Consensus 652 ~~~l~~g~T~~d~a~~i~~~----------------~-~~~~vNg~~v~----l~~~L~~Gd~v~i~~ 698 (698)
-+.++.|+|+.|+...+... . -.+.|||+.++ ++++|++||.|+|+.
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEEC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCCEEEEeC
Confidence 45677899999998888621 2 34899999998 899999999999973
No 31
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=95.76 E-value=0.013 Score=48.74 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=37.4
Q ss_pred eEecCCCCCHHHHHHHhCCC-------Cce-EEEcCEe-eCCCCcCCCCCEEEEe
Q 005392 652 IMRLRSGSTAADAAMKVGLE-------GKL-VLVNGQL-VLPNTELKDGDIVEVR 697 (698)
Q Consensus 652 ~~~l~~g~T~~d~a~~i~~~-------~~~-~~vNg~~-v~l~~~L~~Gd~v~i~ 697 (698)
.+++ .|+|+.|+...+... ..+ +.|||+. +.++++|++||.|.|+
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLL 68 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEE
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEE
Confidence 3567 899999999988732 223 7999999 7799999999999997
No 32
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=94.72 E-value=0.032 Score=48.14 Aligned_cols=42 Identities=29% Similarity=0.378 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHhC--C--------C----C----ce-EEEcCEeeC----CCCcCCCCCEEEEe
Q 005392 656 RSGSTAADAAMKVG--L--------E----G----KL-VLVNGQLVL----PNTELKDGDIVEVR 697 (698)
Q Consensus 656 ~~g~T~~d~a~~i~--~--------~----~----~~-~~vNg~~v~----l~~~L~~Gd~v~i~ 697 (698)
+.|+|+.|+...+. . . . .+ +.|||+.++ ++++|++||.|.|+
T Consensus 23 ~~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 23 ASGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTIL 87 (93)
T ss_dssp ECCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred cCCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEE
Confidence 46899999988885 1 1 1 23 899999999 79999999999986
No 33
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=93.64 E-value=0.061 Score=47.31 Aligned_cols=45 Identities=24% Similarity=0.309 Sum_probs=35.8
Q ss_pred EecCCCCCHHHHHHHhCCC-----C----------c--------eEEEcCEee----CCCCcCCCCCEEEEeC
Q 005392 653 MRLRSGSTAADAAMKVGLE-----G----------K--------LVLVNGQLV----LPNTELKDGDIVEVRV 698 (698)
Q Consensus 653 ~~l~~g~T~~d~a~~i~~~-----~----------~--------~~~vNg~~v----~l~~~L~~Gd~v~i~~ 698 (698)
+.++ |+|+.|+...+... . . .+.|||+.+ .++++|++||.|+|+.
T Consensus 23 ~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 23 LPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLETLLKDSDEIGILP 94 (99)
T ss_dssp EEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTSTTSCCCTTEEEEEEC
T ss_pred EEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCCCCCCCCCCCEEEEEC
Confidence 3455 79999998888511 1 1 589999999 6899999999999973
No 34
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=92.84 E-value=0.08 Score=51.20 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=37.4
Q ss_pred eEecCCCCCHHHHHHHhCCC---------------Cc-eEEEcCEeeCC----CCcCCCCCEEEEeC
Q 005392 652 IMRLRSGSTAADAAMKVGLE---------------GK-LVLVNGQLVLP----NTELKDGDIVEVRV 698 (698)
Q Consensus 652 ~~~l~~g~T~~d~a~~i~~~---------------~~-~~~vNg~~v~l----~~~L~~Gd~v~i~~ 698 (698)
-+.++. +|+.|+...++.. .. .+.|||+.++. +|+|++||.|.|+.
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFP 82 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEEC
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCCCccCCCCCCEEEEEC
Confidence 456774 9999999888622 23 38999999998 99999999999973
No 35
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=92.76 E-value=0.042 Score=59.50 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHhCCC--C--ce-------EEEcCEeeCCCCcCCCCCEEEEeC
Q 005392 657 SGSTAADAAMKVGLE--G--KL-------VLVNGQLVLPNTELKDGDIVEVRV 698 (698)
Q Consensus 657 ~g~T~~d~a~~i~~~--~--~~-------~~vNg~~v~l~~~L~~Gd~v~i~~ 698 (698)
++||+.|||..+|-+ . .. ++-+||.+-.+|.|+|||+|+|++
T Consensus 323 ~~at~~D~a~~ih~d~~~~F~~a~v~Gs~~K~~~r~eGkdyvv~DGDVi~iv~ 375 (376)
T 4a9a_A 323 DRCSVKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTILK 375 (376)
T ss_dssp TBCBHHHHHHHHCGGGGGGEEEEEEESTTSSSSSEEECTTCBCCTTCEEEEEE
T ss_pred CCCcHHHHHHHHHHHHHHhhhHhhhcCcccCCCCCccCCCcEEcCCCEEEEEe
Confidence 349999999999922 2 22 356779999999999999999975
No 36
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=92.34 E-value=0.11 Score=45.57 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=35.1
Q ss_pred EecC--CCCCHHHHHHHhC--CCC-----------------ceEEEcCEeeC----CCCcCCCCCEEEEe
Q 005392 653 MRLR--SGSTAADAAMKVG--LEG-----------------KLVLVNGQLVL----PNTELKDGDIVEVR 697 (698)
Q Consensus 653 ~~l~--~g~T~~d~a~~i~--~~~-----------------~~~~vNg~~v~----l~~~L~~Gd~v~i~ 697 (698)
+.+| .|+|+.|+...+. .+. ..+.|||+.+. ++|+|++||.|.|+
T Consensus 24 ~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 24 IKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFT 93 (99)
T ss_dssp EEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEE
T ss_pred EecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEE
Confidence 3567 7999999888874 211 12899999764 89999999999886
No 37
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=88.58 E-value=0.48 Score=51.03 Aligned_cols=55 Identities=25% Similarity=0.299 Sum_probs=41.9
Q ss_pred EEEEccC---CCeEecCCCCCHHHHHHHhC--CCC--ceEEE-----------------cC--EeeCCCCcCCCCCEEEE
Q 005392 643 VIVCWPN---GEIMRLRSGSTAADAAMKVG--LEG--KLVLV-----------------NG--QLVLPNTELKDGDIVEV 696 (698)
Q Consensus 643 v~vftp~---G~~~~l~~g~T~~d~a~~i~--~~~--~~~~v-----------------Ng--~~v~l~~~L~~Gd~v~i 696 (698)
+.+||-. -+...++.|+|+.|+|..|| +.. ..|.| .| |+.--+|.++|||+|++
T Consensus 285 i~~ft~g~~e~~aw~i~~g~ta~~~a~~IH~d~~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~~~ 364 (368)
T 2dby_A 285 LTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIYV 364 (368)
T ss_dssp EEEEEESSSCEEEEEEETTCBHHHHHHHHCHHHHHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEEEE
T ss_pred EEEECCCCCCcceEEecCCCcHHHHHHhhHHHHHhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEEEE
Confidence 4467732 24678999999999999999 222 33444 26 88899999999999998
Q ss_pred e
Q 005392 697 R 697 (698)
Q Consensus 697 ~ 697 (698)
+
T Consensus 365 ~ 365 (368)
T 2dby_A 365 L 365 (368)
T ss_dssp E
T ss_pred E
Confidence 6
No 38
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=87.95 E-value=0.28 Score=48.93 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=24.7
Q ss_pred CceEEEcCEeeCCCCcCCCCCEEEEeC
Q 005392 672 GKLVLVNGQLVLPNTELKDGDIVEVRV 698 (698)
Q Consensus 672 ~~~~~vNg~~v~l~~~L~~Gd~v~i~~ 698 (698)
.-.++|||++++|+++|.+|+.|+++|
T Consensus 35 ~vaakvNg~l~dL~~~l~~~~~ve~it 61 (224)
T 1tke_A 35 CIAGRVNGELVDACDLIENDAQLSIIT 61 (224)
T ss_dssp CCEEEETTEEEETTCCBCSCEEEEEEC
T ss_pred eEEEEECCEEeccceEcCCCCeEEEEe
Confidence 456899999999999999999999987
No 39
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=84.85 E-value=0.72 Score=49.68 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=42.4
Q ss_pred EEEEEccCC---CeEecCCCCCHHHHHHHhCCCC----ceEEE-----------------cC--EeeCCCCcCCCCCEEE
Q 005392 642 VVIVCWPNG---EIMRLRSGSTAADAAMKVGLEG----KLVLV-----------------NG--QLVLPNTELKDGDIVE 695 (698)
Q Consensus 642 ~v~vftp~G---~~~~l~~g~T~~d~a~~i~~~~----~~~~v-----------------Ng--~~v~l~~~L~~Gd~v~ 695 (698)
-+.+||-.- +...++.|+|+-|+|..||-+- ..|.| -| |+.--+|.++|||+|+
T Consensus 279 li~~ft~g~~e~raw~i~~G~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii~ 358 (363)
T 1jal_A 279 LQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMH 358 (363)
T ss_dssp EEEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEE
T ss_pred CEEEECCCCCCcceeEecCCCcHHHHHHhhHHHHHhccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEEE
Confidence 345677332 4678999999999999999222 23444 26 8889999999999999
Q ss_pred Ee
Q 005392 696 VR 697 (698)
Q Consensus 696 i~ 697 (698)
++
T Consensus 359 f~ 360 (363)
T 1jal_A 359 FR 360 (363)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 40
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=83.77 E-value=1.2 Score=40.26 Aligned_cols=45 Identities=20% Similarity=0.156 Sum_probs=33.9
Q ss_pred EecC---CCCCHHHHHHHhC--C-----------CC----ceEEEcCEe----eCCCCcCCCCCEEEEe
Q 005392 653 MRLR---SGSTAADAAMKVG--L-----------EG----KLVLVNGQL----VLPNTELKDGDIVEVR 697 (698)
Q Consensus 653 ~~l~---~g~T~~d~a~~i~--~-----------~~----~~~~vNg~~----v~l~~~L~~Gd~v~i~ 697 (698)
+.+| .++|+.|+...|- . +. -.+.|||+- --++|+|++||.|.|+
T Consensus 34 vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~ii 102 (114)
T 1wgk_A 34 VALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFI 102 (114)
T ss_dssp EEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEE
T ss_pred EEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEe
Confidence 4556 3479999988875 1 11 238999985 4699999999999986
No 41
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=82.09 E-value=0.8 Score=49.89 Aligned_cols=55 Identities=24% Similarity=0.255 Sum_probs=40.8
Q ss_pred EEEEccC---CCeEecCCCCCHHHHHHHhC--CCCc--eEE-----------------EcC--EeeCCCCcCCCCCEEEE
Q 005392 643 VIVCWPN---GEIMRLRSGSTAADAAMKVG--LEGK--LVL-----------------VNG--QLVLPNTELKDGDIVEV 696 (698)
Q Consensus 643 v~vftp~---G~~~~l~~g~T~~d~a~~i~--~~~~--~~~-----------------vNg--~~v~l~~~L~~Gd~v~i 696 (698)
+.+||-. -+...++.|+|+-|+|..|| +... .|. =.| |++--+|.++|||+|++
T Consensus 306 i~~fT~g~~evrawti~~g~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii~f 385 (396)
T 2ohf_A 306 EYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFF 385 (396)
T ss_dssp EEEEEESSSEEEEEEEETTCBHHHHHHTTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEEEE
T ss_pred EEEECCCCCcceeEEecCCCcHHHHHhhhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEEEE
Confidence 3356642 25678999999999999999 3222 122 234 99999999999999998
Q ss_pred e
Q 005392 697 R 697 (698)
Q Consensus 697 ~ 697 (698)
+
T Consensus 386 ~ 386 (396)
T 2ohf_A 386 K 386 (396)
T ss_dssp E
T ss_pred E
Confidence 6
No 42
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=80.80 E-value=0.62 Score=38.90 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=20.8
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 005392 469 GGRELLVAVSFGLAASEVVADRRP 492 (698)
Q Consensus 469 ngr~l~v~l~~~L~~gD~Vei~T~ 492 (698)
||+ ++|.++.|+.||.|+|+++
T Consensus 52 Ng~--~v~~~~~L~dGD~V~i~pp 73 (77)
T 1rws_A 52 NGK--VVLEDDEVKDGDFVEVIPV 73 (77)
T ss_dssp TTE--EECSSSCCCSSCCCBCSCC
T ss_pred CCE--ECCCCCCcCCCCEEEEEcc
Confidence 899 9999999999999999976
No 43
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=78.39 E-value=0.66 Score=41.00 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=21.5
Q ss_pred CCeeEEEecccccCCCCeEEEcCCC
Q 005392 469 GGRELLVAVSFGLAASEVVADRRPS 493 (698)
Q Consensus 469 ngr~l~v~l~~~L~~gD~Vei~T~~ 493 (698)
||+ .||+++.|+.||+|||+++=
T Consensus 64 ng~--~v~~d~~L~dGDRVEIyrpl 86 (97)
T 2hj1_A 64 FSR--PIKLTDVLKEGDRIEIYRPL 86 (97)
T ss_dssp EEC--SCCTTCBCCTTCEEEECCCC
T ss_pred cCE--ECCCCccCCCCCEEEEEecc
Confidence 789 99999999999999999884
No 44
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=75.28 E-value=1.8 Score=38.99 Aligned_cols=24 Identities=46% Similarity=0.407 Sum_probs=21.5
Q ss_pred eEEEcCEee----CCCCcCCCCCEEEEe
Q 005392 674 LVLVNGQLV----LPNTELKDGDIVEVR 697 (698)
Q Consensus 674 ~~~vNg~~v----~l~~~L~~Gd~v~i~ 697 (698)
.+.|||+-+ -++|+|++||.|.|+
T Consensus 69 lVLVNg~d~e~l~gldt~L~dgD~V~fi 96 (110)
T 2k9x_A 69 LVLVNSCDAEVVGGMDYVLNDGDTVEFI 96 (110)
T ss_dssp EEEESSSBHHHHTSSCCCCCSSCEEEEE
T ss_pred EEEECCeeeeccCCcccCCCCcCEEEEe
Confidence 389999998 589999999999886
No 45
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=74.01 E-value=1.6 Score=35.17 Aligned_cols=22 Identities=5% Similarity=-0.023 Sum_probs=19.7
Q ss_pred CCeeEEEec----ccccCCCCeEEEcCC
Q 005392 469 GGRELLVAV----SFGLAASEVVADRRP 492 (698)
Q Consensus 469 ngr~l~v~l----~~~L~~gD~Vei~T~ 492 (698)
||+ ++|- ++.|+.||.|+|+++
T Consensus 37 N~~--~v~~~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 37 NQQ--IVPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp TTE--EECHHHHTTCCCCTTEEECEEES
T ss_pred CCE--ECCchhcCCcCCCCCCEEEEEee
Confidence 899 8887 789999999999875
No 46
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=73.32 E-value=1.8 Score=35.40 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=20.6
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 005392 469 GGRELLVAVSFGLAASEVVADRRP 492 (698)
Q Consensus 469 ngr~l~v~l~~~L~~gD~Vei~T~ 492 (698)
||. ++|-+..|+.||.|+|+++
T Consensus 45 N~~--~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 45 NGQ--IVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp TTE--ECCTTSBCCTTCEEEEEEC
T ss_pred CCE--ECCCcccCCCCCEEEEEec
Confidence 899 9999999999999999876
No 47
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=72.99 E-value=1.3 Score=37.08 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=30.8
Q ss_pred cCCCCCceeee---cCCce--eeeEEEEEccCCeeEEEecccccCCCCeEEEcCCC
Q 005392 443 SLKMGHPVIRV---EGSNL--LAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 493 (698)
Q Consensus 443 ~lp~g~~v~t~---iG~~c--~gAkV~~v~~ngr~l~v~l~~~L~~gD~Vei~T~~ 493 (698)
++|.|.|+-+. .|-.. +...| ||+ +||.+..++ ||.|+|++.=
T Consensus 16 ev~~g~Tv~dLL~~Lgl~~~~VvV~v-----NG~--~v~~d~~l~-GD~VeIv~~V 63 (74)
T 2l32_A 16 AVDDDGTYADLVRAVDLSPHEVTVLV-----DGR--PVPEDQSVE-VDRVKVLRLI 63 (74)
T ss_dssp ECSTTCSHHHHHHTTCCCSSCCCEEC-----CCC--CCCTTSSSC-CCCEEECSSC
T ss_pred EcCCCCcHHHHHHHcCCCcceEEEEE-----CCE--ECCHHHCCC-CCEEEEEEee
Confidence 58889886554 44222 22333 899 999999887 9999999763
No 48
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=71.02 E-value=2.1 Score=39.26 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=21.0
Q ss_pred eEEEcCEeeCCCCcCCCCCEEEE
Q 005392 674 LVLVNGQLVLPNTELKDGDIVEV 696 (698)
Q Consensus 674 ~~~vNg~~v~l~~~L~~Gd~v~i 696 (698)
.++|||+.|.-.++|++||+|.|
T Consensus 91 gt~VNG~~V~~~~~L~~GD~I~l 113 (124)
T 3fm8_A 91 RTFVNGSSVSSPIQLHHGDRILW 113 (124)
T ss_dssp CEEETTEECCSCEEECTTCEEEE
T ss_pred CEEECCEEcCCcEECCCCCEEEE
Confidence 58999999987799999999986
No 49
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=70.90 E-value=2.5 Score=36.08 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.8
Q ss_pred eEEEcCEeeCCCCcCCCCCEEEEe
Q 005392 674 LVLVNGQLVLPNTELKDGDIVEVR 697 (698)
Q Consensus 674 ~~~vNg~~v~l~~~L~~Gd~v~i~ 697 (698)
.++|||+.+..++.|+.||.|+|.
T Consensus 27 ~V~VNg~~~~~~~~v~~gd~I~v~ 50 (92)
T 2k6p_A 27 AVWLNGSCAKASKEVKAGDTISLH 50 (92)
T ss_dssp CCEETTEECCTTCBCCTTCEEEEC
T ss_pred cEEECCEEcCCCCCcCCCCEEEEE
Confidence 489999999999999999999874
No 50
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=70.32 E-value=2.6 Score=36.37 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=19.5
Q ss_pred CCeeEEEec----ccccCCCCeEEEcCC
Q 005392 469 GGRELLVAV----SFGLAASEVVADRRP 492 (698)
Q Consensus 469 ngr~l~v~l----~~~L~~gD~Vei~T~ 492 (698)
||+ +||- ++.|+.||.|+|+++
T Consensus 58 Ng~--iV~~~~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 58 NKE--IIGKERYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp TTE--EECGGGTTTSBCCSSSEEEEEEE
T ss_pred CCE--ECChhhcCCcCCCCCCEEEEEcc
Confidence 899 8997 588999999999875
No 51
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=69.75 E-value=3.2 Score=45.06 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=39.9
Q ss_pred EEEEEccC---CCeEecCCCCCHHHHHHHhC--CCC--ceEEEc-----------------C--EeeCCCCcCCCCCEEE
Q 005392 642 VVIVCWPN---GEIMRLRSGSTAADAAMKVG--LEG--KLVLVN-----------------G--QLVLPNTELKDGDIVE 695 (698)
Q Consensus 642 ~v~vftp~---G~~~~l~~g~T~~d~a~~i~--~~~--~~~~vN-----------------g--~~v~l~~~L~~Gd~v~ 695 (698)
-+.+||-. -+...++.|+|+-++|..|| +.. ..|.|= | |+.-=+|.++|||++.
T Consensus 307 l~~~ft~g~~e~rawti~~G~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~~ 386 (392)
T 1ni3_A 307 LINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAH 386 (392)
T ss_dssp EEEEEECCSSEEEEEEEETTCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEEE
T ss_pred CEEEECCCCCcceeEEeCCCCcHHHHccccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEEE
Confidence 34467732 25688999999999999999 222 223222 3 4577789999999998
Q ss_pred Ee
Q 005392 696 VR 697 (698)
Q Consensus 696 i~ 697 (698)
++
T Consensus 387 f~ 388 (392)
T 1ni3_A 387 WK 388 (392)
T ss_dssp CC
T ss_pred EE
Confidence 75
No 52
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=69.01 E-value=2 Score=36.17 Aligned_cols=23 Identities=9% Similarity=0.001 Sum_probs=20.8
Q ss_pred CCeeEEEecc----cccCCCCeEEEcCCC
Q 005392 469 GGRELLVAVS----FGLAASEVVADRRPS 493 (698)
Q Consensus 469 ngr~l~v~l~----~~L~~gD~Vei~T~~ 493 (698)
||. +||=+ +.|+.||+|||+++=
T Consensus 40 Ng~--iVpr~~~~~~~L~dGD~IEIv~~V 66 (78)
T 2k5p_A 40 NGE--VLEREAFDATTVKDGDAVEFLYFM 66 (78)
T ss_dssp TTE--ECCTTHHHHCEECSSBCEEECCCC
T ss_pred CCE--ECChHHcCcccCCCCCEEEEEeee
Confidence 899 89986 899999999999874
No 53
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=66.01 E-value=3.3 Score=39.03 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.7
Q ss_pred eEEEcCEeeCCCCcCCCCCEEEE
Q 005392 674 LVLVNGQLVLPNTELKDGDIVEV 696 (698)
Q Consensus 674 ~~~vNg~~v~l~~~L~~Gd~v~i 696 (698)
..+|||+.|.-.++|++||+|.|
T Consensus 111 gt~VNG~~i~~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 111 DTYVNGKKVTEPSILRSGNRIIM 133 (154)
T ss_dssp CEEETTEECCSCEECCTTCEEEE
T ss_pred ceEECCEEcCCceECCCCCEEEE
Confidence 48999999987789999999976
No 54
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=63.10 E-value=4.7 Score=33.42 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=20.7
Q ss_pred CCeeEEEecc----cccCCCCeEEEcCCC
Q 005392 469 GGRELLVAVS----FGLAASEVVADRRPS 493 (698)
Q Consensus 469 ngr~l~v~l~----~~L~~gD~Vei~T~~ 493 (698)
||. +||-+ +.|+.||+|||+++=
T Consensus 36 Ng~--iVpr~~~~~~~L~dGD~veIv~~V 62 (73)
T 2kl0_A 36 NYD--VVPRGKWDETPVTAGDEIEILTPR 62 (73)
T ss_dssp SSS--EECHHHHTTCBCCTTCEEEEECCC
T ss_pred CCE--ECChHHcCcccCCCCCEEEEEccc
Confidence 899 89985 789999999999884
No 55
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=63.06 E-value=4 Score=39.78 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEcCEeeCCCCcCCCCCEEEE
Q 005392 675 VLVNGQLVLPNTELKDGDIVEV 696 (698)
Q Consensus 675 ~~vNg~~v~l~~~L~~Gd~v~i 696 (698)
++|||+.|.=.++|++||+|-+
T Consensus 142 t~VNG~~I~~~~~L~~GDrI~l 163 (184)
T 4egx_A 142 TYVNGKKVTEPSILRSGNRIIM 163 (184)
T ss_dssp EEETTEECCSCEECCTTCEEEE
T ss_pred EEEcCEEccccEEcCCCCEEEE
Confidence 6899999998999999999965
No 56
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=63.00 E-value=5.3 Score=36.86 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.5
Q ss_pred ceEEEcCEeeCCCCcCCCCCEEEEe
Q 005392 673 KLVLVNGQLVLPNTELKDGDIVEVR 697 (698)
Q Consensus 673 ~~~~vNg~~v~l~~~L~~Gd~v~i~ 697 (698)
..|.|||+.+..++.++.||.|.|.
T Consensus 34 G~V~VNG~~vk~s~~V~~GD~I~I~ 58 (133)
T 1dm9_A 34 GKVHYNGQRSKPSKIVELNATLTLR 58 (133)
T ss_dssp TCEEETTEECCTTCBCCTTCEEEEE
T ss_pred CcEEECCEEcCCCCEeCCCCEEEEE
Confidence 4589999999999999999999884
No 57
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=62.59 E-value=4.3 Score=33.16 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=20.6
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 005392 469 GGRELLVAVSFGLAASEVVADRRP 492 (698)
Q Consensus 469 ngr~l~v~l~~~L~~gD~Vei~T~ 492 (698)
||+ +++.++.|+.||.|+|+.+
T Consensus 52 Ng~--~v~~~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 52 NEE--FVQKSDFIQPNDTVALIPP 73 (77)
T ss_dssp TTE--EECTTSEECTTCEEEEECS
T ss_pred CCE--ECCCCCCcCCCCEEEEECC
Confidence 899 8999999999999999876
No 58
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=59.16 E-value=7.8 Score=30.87 Aligned_cols=22 Identities=14% Similarity=-0.108 Sum_probs=19.9
Q ss_pred CCeeEEEecc----cccCCCCeEEEcCC
Q 005392 469 GGRELLVAVS----FGLAASEVVADRRP 492 (698)
Q Consensus 469 ngr~l~v~l~----~~L~~gD~Vei~T~ 492 (698)
||+ ++|-+ +.|+.||.|+|+++
T Consensus 35 N~~--~v~~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 35 NEE--AFLGLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp TTE--EEEGGGCCCCCCCTTCEEEEEEC
T ss_pred CCE--ECCccccCCcCCCCCCEEEEEee
Confidence 899 89976 99999999999876
No 59
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=57.11 E-value=4.6 Score=36.17 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.1
Q ss_pred ceEEEcCEeeCCCCcCCCCCEEEE
Q 005392 673 KLVLVNGQLVLPNTELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l~~~L~~Gd~v~i 696 (698)
..++|||+.+.-.++|++||+|.|
T Consensus 80 ngt~vNg~~i~~~~~L~~GD~I~i 103 (120)
T 1wln_A 80 AETYVDGQRISETTMLQSGMRLQF 103 (120)
T ss_dssp SCEEETSCBCSSCEEECTTCEEEE
T ss_pred CCEEECCEEcCCCEECCCCCEEEE
Confidence 458999999997779999999976
No 60
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=55.86 E-value=7.2 Score=35.70 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.7
Q ss_pred ceEEEcCEeeCCCC--cCCCCCEEEE
Q 005392 673 KLVLVNGQLVLPNT--ELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l~~--~L~~Gd~v~i 696 (698)
.+.+|||+.++... +|++||+|.|
T Consensus 94 NGT~vNg~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 94 HGTFLNKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp SCEEETTEECCTTCCEECCTTCEEEE
T ss_pred CceEECCEECCCCceeECCCCCEEEE
Confidence 56899999998875 6999999976
No 61
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=55.38 E-value=4.3 Score=35.48 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=20.9
Q ss_pred ceEEEcCEeeCCCCcCCCCCEEEE
Q 005392 673 KLVLVNGQLVLPNTELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l~~~L~~Gd~v~i 696 (698)
.+.+|||+.+.-..+|++||+|.|
T Consensus 69 nGt~vng~~i~~~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 69 NGVIVEGRKIEHQSTLSANQVVAL 92 (106)
T ss_dssp SCCEETTEECSSEEECCTTCCEEE
T ss_pred CCeEECCEECCCCeECCCCCEEEE
Confidence 357999999987789999999976
No 62
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=53.67 E-value=5.4 Score=34.41 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.2
Q ss_pred ceEEEcCEeeCCCCcCCCCCEEEE
Q 005392 673 KLVLVNGQLVLPNTELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l~~~L~~Gd~v~i 696 (698)
.+.+|||+.+. .++|++||++.|
T Consensus 65 nGt~vng~~i~-~~~L~~gd~i~i 87 (100)
T 3po8_A 65 NGTTVNNAPVQ-EWQLADGDVIRL 87 (100)
T ss_dssp SCCEETTEECS-EEECCTTCEEEE
T ss_pred CCEEECCEECc-eEECCCCCEEEE
Confidence 35899999998 789999999986
No 63
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=52.14 E-value=7.5 Score=38.23 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=13.9
Q ss_pred CCCChHHHHHHhhccccc
Q 005392 7 GKRAVDTVVAGILHDVVD 24 (698)
Q Consensus 7 g~~d~~tIiAALLHDvVE 24 (698)
|....-.+.+|||||+.|
T Consensus 57 ~vD~~~~~~~aLlHDi~E 74 (201)
T 2paq_A 57 NVNAERIALLAMYHDASE 74 (201)
T ss_dssp CCCHHHHHHHHHHTTTTH
T ss_pred ccCHHHHHHHHHhccccc
Confidence 344556777999999988
No 64
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=50.13 E-value=8.3 Score=37.69 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=11.3
Q ss_pred hHHHHHHhhccccccc
Q 005392 11 VDTVVAGILHDVVDDA 26 (698)
Q Consensus 11 ~~tIiAALLHDvVEDT 26 (698)
.-..+||||||+.-..
T Consensus 49 ~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 49 FTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHhccCccc
Confidence 3467899999997653
No 65
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=49.56 E-value=6.9 Score=35.78 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.3
Q ss_pred ceEEEcCEeeCCCCcCCCCCEEEE
Q 005392 673 KLVLVNGQLVLPNTELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l~~~L~~Gd~v~i 696 (698)
.+.+|||+.+.- .+|++||+|.|
T Consensus 82 NGT~vNg~~i~~-~~L~~GD~I~i 104 (131)
T 3hx1_A 82 NGLMINGKKVQE-HIIQTGDEIVM 104 (131)
T ss_dssp SCEEETTEEESE-EECCTTCEEEC
T ss_pred CceEECCEEeEe-EECCCCCEEEE
Confidence 468999999985 99999999976
No 66
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=47.56 E-value=7.9 Score=36.09 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.0
Q ss_pred ceEEEcCEeeCC-CCcCCCCCEEEE
Q 005392 673 KLVLVNGQLVLP-NTELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l-~~~L~~Gd~v~i 696 (698)
.+.+|||+.+.- .++|++||+|.|
T Consensus 87 NGT~VNg~~i~~~~~~L~~GD~I~l 111 (151)
T 2jqj_A 87 NGTFINGNRLVKKDYILKNGDRIVF 111 (151)
T ss_dssp SCEEETTEECCSSCEEECSSEEEEE
T ss_pred CCeEECCEEcCCCceECCCCCEEEE
Confidence 468999999987 589999999986
No 67
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=47.18 E-value=7.3 Score=32.33 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=28.9
Q ss_pred CCHHHHHHHhCCC-C----------ceEEEcCEee-CCCCcCCCCCEEEE
Q 005392 659 STAADAAMKVGLE-G----------KLVLVNGQLV-LPNTELKDGDIVEV 696 (698)
Q Consensus 659 ~T~~d~a~~i~~~-~----------~~~~vNg~~v-~l~~~L~~Gd~v~i 696 (698)
...-.|-...|+. . ..++|||+.+ ...+.+..||.|+|
T Consensus 21 ~RLdk~L~~~g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v 70 (79)
T 1p9k_A 21 VELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 70 (79)
T ss_dssp CCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEE
T ss_pred chHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEE
Confidence 4556676677753 2 2379999987 78999999999987
No 68
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=46.35 E-value=8.7 Score=34.04 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.3
Q ss_pred ceEEEcCEeeCCCCcCCCCCEEEE
Q 005392 673 KLVLVNGQLVLPNTELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l~~~L~~Gd~v~i 696 (698)
.+.+|||+.+. .++|++||+|.|
T Consensus 73 nGt~vng~~i~-~~~L~~gd~i~i 95 (115)
T 2xt9_B 73 NGTYVNREPVD-SAVLANGDEVQI 95 (115)
T ss_dssp SCEEETTEECS-EEEECTTCEEEE
T ss_pred CCeEECCEEcc-eEECCCCCEEEE
Confidence 45899999998 789999999986
No 69
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=45.70 E-value=11 Score=37.78 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=13.2
Q ss_pred CCCChHHHHHHhhccccc
Q 005392 7 GKRAVDTVVAGILHDVVD 24 (698)
Q Consensus 7 g~~d~~tIiAALLHDvVE 24 (698)
|....-..+||||||+..
T Consensus 45 ~~d~~~l~~AalLHDig~ 62 (223)
T 3dto_A 45 KVDVFVVQIAALFHDLID 62 (223)
T ss_dssp TCCHHHHHHHHHHHSTTC
T ss_pred CCCHHHHHHHHHHhhccc
Confidence 444445678999999985
No 70
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=45.61 E-value=11 Score=35.68 Aligned_cols=25 Identities=36% Similarity=0.666 Sum_probs=21.9
Q ss_pred ceEEEcCEee-CCCCcCCCCCEEEEe
Q 005392 673 KLVLVNGQLV-LPNTELKDGDIVEVR 697 (698)
Q Consensus 673 ~~~~vNg~~v-~l~~~L~~Gd~v~i~ 697 (698)
..+.|||+.| .+++.++.||.|+|.
T Consensus 76 G~V~VNG~~v~~ps~~V~~gD~I~V~ 101 (159)
T 1c05_A 76 GHILVDGSRVNIPSYRVKPGQTIAVR 101 (159)
T ss_dssp TCEEETTEECCCSSCBCCTTCEEEEC
T ss_pred CCEEECCEEeCcCCcEeCCCCEEEEe
Confidence 4489999999 599999999999874
No 71
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=45.60 E-value=9.2 Score=35.61 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.8
Q ss_pred ceEEEcCEeeCC--CCcCCCCCEEEE
Q 005392 673 KLVLVNGQLVLP--NTELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l--~~~L~~Gd~v~i 696 (698)
.+.+|||+.+.. .++|++||+|.|
T Consensus 103 NGT~VNg~~i~~~~~~~L~~GD~I~l 128 (149)
T 1gxc_A 103 NGTFVNTELVGKGKRRPLNNNSEIAL 128 (149)
T ss_dssp SCEEETTEECCTTCEEECCTTEEEEE
T ss_pred CCeEECCEECCCCCeEECCCCCEEEE
Confidence 468999999984 688999999986
No 72
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=44.78 E-value=12 Score=30.60 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=20.2
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 005392 469 GGRELLVAVSFGLAASEVVADRRP 492 (698)
Q Consensus 469 ngr~l~v~l~~~L~~gD~Vei~T~ 492 (698)
||+ .++.++.|+.||.|+|+.+
T Consensus 56 N~~--~v~~~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 56 NQT--LVSFDHPLTDGDEVAFFPP 77 (81)
T ss_dssp TTE--ECCTTCBCCTTCEEEEECC
T ss_pred CCE--ECCCCCCCCCCCEEEEeCC
Confidence 899 8999999999999999865
No 73
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=44.43 E-value=13 Score=34.15 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.1
Q ss_pred ceEEEcCEeeCC--CCcCCCCCEEEE
Q 005392 673 KLVLVNGQLVLP--NTELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l--~~~L~~Gd~v~i 696 (698)
.+.+|||+.+.- .++|++||+|.|
T Consensus 75 NGT~vNg~~l~~~~~~~L~~GD~I~l 100 (138)
T 2pie_A 75 NGVWLNRARLEPLRVYSIHQGDYIQL 100 (138)
T ss_dssp SCEEETTEECCTTCCEECCTTCEEEE
T ss_pred CCeEECCEEcCCCCcEECCCCCEEEE
Confidence 468999999987 589999999987
No 74
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=42.81 E-value=13 Score=36.95 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.0
Q ss_pred ceEEEcCEeeC-CCCcCCCCCEEEEe
Q 005392 673 KLVLVNGQLVL-PNTELKDGDIVEVR 697 (698)
Q Consensus 673 ~~~~vNg~~v~-l~~~L~~Gd~v~i~ 697 (698)
..+.|||+.|. +++.++.||.|+|.
T Consensus 124 G~V~VNG~~v~~ps~~V~~gD~I~V~ 149 (209)
T 2vqe_D 124 GHITVNGRRVDLPSYRVRPGDEIAVA 149 (209)
T ss_dssp TCEEETTEECCCTTCBCCTTCEEEEC
T ss_pred CCEEECCEEeCcCCcCcCCCCEEEEc
Confidence 34899999994 99999999999884
No 75
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=42.52 E-value=22 Score=35.10 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=14.2
Q ss_pred CCCChHHHHHHhhcccccc
Q 005392 7 GKRAVDTVVAGILHDVVDD 25 (698)
Q Consensus 7 g~~d~~tIiAALLHDvVED 25 (698)
|....-..+||||||+...
T Consensus 46 ~~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 46 ITDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp CSCCHHHHHHHHHTTTTCC
T ss_pred CCCHHHHHHHHHHHcCCCC
Confidence 4444556789999999874
No 76
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=42.27 E-value=12 Score=32.29 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.4
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 005392 469 GGRELLVAVSFGLAASEVVADRRP 492 (698)
Q Consensus 469 ngr~l~v~l~~~L~~gD~Vei~T~ 492 (698)
||+ .++.++.|+.||.|+|+.+
T Consensus 73 Ng~--~v~~~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 73 NGR--YVSWDEELKDGDVVGVFPP 94 (98)
T ss_dssp TTB--CCCTTCBCCTTCEEEEESC
T ss_pred CCE--ECCCCCCCCCCCEEEEECC
Confidence 899 8999999999999999865
No 77
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=42.23 E-value=8.3 Score=34.08 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=20.8
Q ss_pred ceEEEcCEeeCC--CCcCCCCCEEEEe
Q 005392 673 KLVLVNGQLVLP--NTELKDGDIVEVR 697 (698)
Q Consensus 673 ~~~~vNg~~v~l--~~~L~~Gd~v~i~ 697 (698)
.+.+|||+.+.. .++|++||+|.|-
T Consensus 68 NGt~vng~~l~~~~~~~L~~GD~i~~G 94 (116)
T 1lgp_A 68 SGTVINKLKVVKKQTCPLQTGDVIYLV 94 (116)
T ss_dssp SCCCCCCCCCCCSSCCCCCTTCEEEEE
T ss_pred CCcEECCEEcCCCCcEECCCCCEEEEe
Confidence 457999998886 5899999999873
No 78
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=40.53 E-value=76 Score=24.69 Aligned_cols=56 Identities=9% Similarity=0.207 Sum_probs=40.2
Q ss_pred EEEEEccCCCe--EecCCCCCHHHHHHHhC----CCCc--eEEEcCEeeCCCC-----cCCCCCEEEEe
Q 005392 642 VVIVCWPNGEI--MRLRSGSTAADAAMKVG----LEGK--LVLVNGQLVLPNT-----ELKDGDIVEVR 697 (698)
Q Consensus 642 ~v~vftp~G~~--~~l~~g~T~~d~a~~i~----~~~~--~~~vNg~~v~l~~-----~L~~Gd~v~i~ 697 (698)
.++|=+++|+. +.+++..|+.|+-..+. ++.. ....+|+...-+. .+++|+.|.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 70 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 36777888874 67899999999888775 5542 2566898775443 45699998764
No 79
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=40.44 E-value=9.8 Score=35.42 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.1
Q ss_pred ceEEEcCEeeCCCCcCCCCCEEEE
Q 005392 673 KLVLVNGQLVLPNTELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l~~~L~~Gd~v~i 696 (698)
.+.+|||+.+. ..+|++||+|.|
T Consensus 108 NGT~VNg~~i~-~~~L~~GD~I~i 130 (143)
T 2kb3_A 108 NGTYVNREPRN-AQVMQTGDEIQI 130 (143)
T ss_dssp SCCEETTEECS-EEECCTTEEEEE
T ss_pred CCeEECCEEcc-eEECCCCCEEEE
Confidence 35799999998 789999999986
No 80
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=40.21 E-value=13 Score=33.44 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=20.8
Q ss_pred ceEEEcCEeeCC--CCcCCCCCEEEE
Q 005392 673 KLVLVNGQLVLP--NTELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l--~~~L~~Gd~v~i 696 (698)
.+.+|||+.+.- .++|++||+|.|
T Consensus 79 NGT~vNg~~l~~~~~~~L~~Gd~I~l 104 (127)
T 1g6g_A 79 NGTWLNGQKVEKNSNQLLSQGDEITV 104 (127)
T ss_dssp SCCEETTEECCTTCCEECCTTCEEEE
T ss_pred CCeEECCEEcCCCCeEEcCCCCEEEE
Confidence 467999999887 589999999986
No 81
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=39.91 E-value=35 Score=28.81 Aligned_cols=36 Identities=8% Similarity=0.025 Sum_probs=26.4
Q ss_pred eEEEEEccCCeeEEEecccccCCCCeEEEcCCCCcc
Q 005392 461 AVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQI 496 (698)
Q Consensus 461 AkV~~v~~ngr~l~v~l~~~L~~gD~Vei~T~~~p~ 496 (698)
|.|.+.+.++....+-+...+.-||.||+++|.+++
T Consensus 10 G~V~~~~~~~g~~~ie~rN~f~~GD~iEi~~P~g~~ 45 (89)
T 4he6_A 10 GLVLGYDPETGIATVQQRNHFRPGDEVEFFGPEIEN 45 (89)
T ss_dssp EEEEEEETTTTEEEEEESSCBCTTCEEEEESTTSCC
T ss_pred EEEEEEeCCCCEEEEEEcCCcCCCCEEEEEcCCCCc
Confidence 455555444334578899999999999999998744
No 82
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=39.37 E-value=11 Score=34.05 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=20.7
Q ss_pred ceEEEcCEeeCCCCcCCCCCEEEE
Q 005392 673 KLVLVNGQLVLPNTELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l~~~L~~Gd~v~i 696 (698)
.+++|||+.+.-.++|++||+|.|
T Consensus 75 nGt~vNg~~i~~~~~L~~Gd~i~i 98 (128)
T 1r21_A 75 NPTQVNGSVIDEPVRLKHGDVITI 98 (128)
T ss_dssp SCCEETTEECSSCEECCTTEEEEC
T ss_pred CCEEECCEECCCcEEcCCCCEEEE
Confidence 457999999986689999999976
No 83
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=38.34 E-value=23 Score=29.55 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=20.4
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 005392 469 GGRELLVAVSFGLAASEVVADRRP 492 (698)
Q Consensus 469 ngr~l~v~l~~~L~~gD~Vei~T~ 492 (698)
||+ .++.++.|+.||.|.++.+
T Consensus 64 N~~--~v~~~~~l~~gDeV~i~Pp 85 (89)
T 3po0_A 64 NGE--AAALGEATAAGDELALFPP 85 (89)
T ss_dssp TTE--ECCTTSBCCTTCEEEEECC
T ss_pred CCE--ECCCCcccCCCCEEEEECC
Confidence 899 8999999999999999865
No 84
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=38.32 E-value=11 Score=35.84 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.6
Q ss_pred ceEEEcCEeeCCC--CcCCCCCEEEE
Q 005392 673 KLVLVNGQLVLPN--TELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l~--~~L~~Gd~v~i 696 (698)
.+.+|||+.++.. ++|++||+|.|
T Consensus 117 NGT~VNg~ri~~~~~~~L~~GD~I~~ 142 (158)
T 3els_A 117 NGTCLNNVVIPGARYIELRSGDVLTL 142 (158)
T ss_dssp SCCEETTEECCTTCCEECCTTEEEES
T ss_pred CccEECCEEcCCCceEEcCCCCEEEE
Confidence 4679999999984 68999999975
No 85
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=38.05 E-value=9.1 Score=36.12 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.4
Q ss_pred CceEEEcCEeeCC--CCcCCCCCEEEE
Q 005392 672 GKLVLVNGQLVLP--NTELKDGDIVEV 696 (698)
Q Consensus 672 ~~~~~vNg~~v~l--~~~L~~Gd~v~i 696 (698)
..+.+|||+.+.- .++|++||+|.|
T Consensus 82 tNGT~VNg~ri~~~~~~~L~~GD~I~l 108 (158)
T 1dmz_A 82 TNVSYLNNNRMIQGTKFLLQDGDEIKI 108 (158)
T ss_dssp TTCCEETTEECCSSEEEECCSSCCEES
T ss_pred cCCeEECCEEcCCCceEEcCCCCEEEE
Confidence 3567999999987 589999999987
No 86
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=37.62 E-value=12 Score=34.57 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=20.8
Q ss_pred ceEEEcCEeeCC--CCcCCCCCEEEE
Q 005392 673 KLVLVNGQLVLP--NTELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l--~~~L~~Gd~v~i 696 (698)
.+.+|||+.+.. .++|++||+|.|
T Consensus 83 NGT~vNg~~i~~~~~~~L~~GD~I~i 108 (145)
T 2csw_A 83 NGVWLNRARLEPLRVYSIHQGDYIQL 108 (145)
T ss_dssp SCEEESSCBCCBTCCEECCSSCCEEE
T ss_pred CCeEECCEECCCCccEECCCCCEEEE
Confidence 458999999887 589999999987
No 87
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=37.26 E-value=12 Score=34.35 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.6
Q ss_pred ceEEEcCEeeCC----------CCcCCCCCEEEE
Q 005392 673 KLVLVNGQLVLP----------NTELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l----------~~~L~~Gd~v~i 696 (698)
.+.+|||+.+.. .++|++||+|.|
T Consensus 76 NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 76 NGTLVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp SCCEETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred CCEEECCEECcCcccccccCCceEECCCCCEEEE
Confidence 457999999984 789999999976
No 88
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=36.86 E-value=17 Score=34.33 Aligned_cols=26 Identities=35% Similarity=0.368 Sum_probs=21.9
Q ss_pred CCceEEEcCEeeCC--CCcCCCCCEEEE
Q 005392 671 EGKLVLVNGQLVLP--NTELKDGDIVEV 696 (698)
Q Consensus 671 ~~~~~~vNg~~v~l--~~~L~~Gd~v~i 696 (698)
...+.+|||+.+.- .++|++||+|.|
T Consensus 105 S~NGT~vNg~~i~~~~~~~L~~GD~I~i 132 (164)
T 1g3g_A 105 STNGTWLNGQKVEKNSNQLLSQGDEITV 132 (164)
T ss_dssp CSSCEEETTEEECTTEEEECCTTCEEEE
T ss_pred CCCCeEECCEEcCCCCceEcCCCCEEEE
Confidence 33568999999987 489999999986
No 89
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=36.71 E-value=21 Score=35.39 Aligned_cols=14 Identities=50% Similarity=0.601 Sum_probs=11.1
Q ss_pred hHHHHHHhhccccc
Q 005392 11 VDTVVAGILHDVVD 24 (698)
Q Consensus 11 ~~tIiAALLHDvVE 24 (698)
.-..+||||||+..
T Consensus 54 ~ll~lAAlLHDigk 67 (231)
T 2pjq_A 54 NLTLAAAWLHDVID 67 (231)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCc
Confidence 34568999999975
No 90
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=35.87 E-value=16 Score=35.62 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=11.9
Q ss_pred ccEEeehhhhHHhhhh
Q 005392 90 PRVVLIKLADRLHNMR 105 (698)
Q Consensus 90 ~RVvlIKLADRLhNmR 105 (698)
+-+.+|..||+|++|-
T Consensus 123 ~~a~Iv~dAD~Ldal~ 138 (220)
T 2pq7_A 123 LTGKILQDADRLDAIG 138 (220)
T ss_dssp HHHHHHHHHHHGGGSS
T ss_pred HHHHHHHHhhHHhhcc
Confidence 3456788899988774
No 91
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=35.13 E-value=15 Score=34.96 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.1
Q ss_pred ceEEEcCEeeCCCCcCCCCCEEEE
Q 005392 673 KLVLVNGQLVLPNTELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l~~~L~~Gd~v~i 696 (698)
.+++|||+.+. ..+|++||+|.|
T Consensus 127 NGT~VNG~~i~-~~~L~~GD~I~l 149 (157)
T 3oun_A 127 NGTTVNNAPVQ-EWQLADGDVIRL 149 (157)
T ss_dssp SCCEETTEECS-EEECCTTCEEEE
T ss_pred CCeEECCEECc-eEECCCCCEEEE
Confidence 35799999998 689999999986
No 92
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=34.86 E-value=11 Score=36.61 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.6
Q ss_pred CceEEEcCEeeCC--CCcCCCCCEEEE
Q 005392 672 GKLVLVNGQLVLP--NTELKDGDIVEV 696 (698)
Q Consensus 672 ~~~~~vNg~~v~l--~~~L~~Gd~v~i 696 (698)
..+.+|||+.+.- .++|++||+|.|
T Consensus 106 tNGT~VNg~ri~~~~~~~L~~GD~I~l 132 (182)
T 1qu5_A 106 TNVSYLNNNRMIQGTKFLLQDGDEIKI 132 (182)
T ss_dssp SSCCEETTEECCSSEEEECCTTBCCEE
T ss_pred cCCeEECCEEcCCCcceEcCCCCEEEE
Confidence 3568999999987 589999999987
No 93
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=34.84 E-value=13 Score=32.87 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=20.2
Q ss_pred ceEEEcCEeeCC--CCcCCCCCEEEE
Q 005392 673 KLVLVNGQLVLP--NTELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l--~~~L~~Gd~v~i 696 (698)
.+.+|||+.+.. .++|++||+|.|
T Consensus 76 nGT~vng~~l~~~~~~~L~~gd~i~l 101 (118)
T 1uht_A 76 NGTLLNSNALDPETSVNLGDGDVIKL 101 (118)
T ss_dssp SCCEESSSBCCTTCEEECCTTEEEEE
T ss_pred CCeEECCEECCCCCeEEcCCCCEEEE
Confidence 357999998876 578999999976
No 94
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=34.72 E-value=15 Score=34.93 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.2
Q ss_pred ceEEEcCEeeCCCCcCCCCCEEEE
Q 005392 673 KLVLVNGQLVLPNTELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l~~~L~~Gd~v~i 696 (698)
.+.+|||+.+. ..+|++||+|.|
T Consensus 117 NGT~VNg~~i~-~~~L~~GD~I~i 139 (162)
T 2kfu_A 117 NGTYVNREPVD-SAVLANGDEVQI 139 (162)
T ss_dssp SCEEETTBCCS-EEECCSSCEEEE
T ss_pred CCeEECCEEcc-eEECCCCCEEEE
Confidence 45899999998 689999999986
No 95
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=33.91 E-value=1.2e+02 Score=23.58 Aligned_cols=55 Identities=9% Similarity=0.209 Sum_probs=39.4
Q ss_pred EEEEccCCCe--EecCCCCCHHHHHHHhC----CCCc--eEEEcCEeeCCC-----CcCCCCCEEEEe
Q 005392 643 VIVCWPNGEI--MRLRSGSTAADAAMKVG----LEGK--LVLVNGQLVLPN-----TELKDGDIVEVR 697 (698)
Q Consensus 643 v~vftp~G~~--~~l~~g~T~~d~a~~i~----~~~~--~~~vNg~~v~l~-----~~L~~Gd~v~i~ 697 (698)
++|=+++|+. +.+++.+|+.|+-.+|. ++.. ....+|+...-+ +-+++|+.|.+.
T Consensus 3 i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3a9j_A 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLV 70 (76)
T ss_dssp EEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 5677888874 67899999999887775 5442 256689876434 345699998764
No 96
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=32.77 E-value=21 Score=35.39 Aligned_cols=28 Identities=32% Similarity=0.602 Sum_probs=23.1
Q ss_pred CCCceEEEcCEee-CCCCcCCCCCEEEEe
Q 005392 670 LEGKLVLVNGQLV-LPNTELKDGDIVEVR 697 (698)
Q Consensus 670 ~~~~~~~vNg~~v-~l~~~L~~Gd~v~i~ 697 (698)
|.+.-+.|||+.| -+++.++.||+|+|.
T Consensus 111 I~~G~V~VNG~~V~~pS~~V~~gD~I~V~ 139 (201)
T 3bbn_D 111 VNHRHILVNGRIVDIPSYRCKPQDTIMAR 139 (201)
T ss_dssp HHTTCEEETTEECCCTTCBCCTTEEEEEC
T ss_pred HhCCcEEeCCEEEeecceecCCCCEEEEc
Confidence 3445589999998 589999999999884
No 97
>2eqq_A GBP, growth-blocking peptide, long form; cytokine; NMR {Mythimna separata} SCOP: j.8.1.1 PDB: 2eqt_A
Probab=32.39 E-value=18 Score=24.47 Aligned_cols=22 Identities=41% Similarity=0.685 Sum_probs=18.5
Q ss_pred eecCcEEEeccCCCCcccceEeec
Q 005392 531 LCRDGMYHKQDQFGRLLPTFIQIT 554 (698)
Q Consensus 531 ~c~~~~~~~~~~~~~~~p~~~~~~ 554 (698)
-|..|....-| ||--|+|+++|
T Consensus 6 gc~~gy~rtad--grckptfy~~i 27 (28)
T 2eqq_A 6 GCVAGYMRTPD--GRCKPTFYQLI 27 (28)
T ss_dssp CCSTTEEECTT--CCEEESSCCSC
T ss_pred cccccceECCC--CccCceEEEEe
Confidence 47778777788 99999999985
No 98
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=32.22 E-value=16 Score=36.40 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.5
Q ss_pred ceEEEcCEeeCCC--CcCCCCCEEEE
Q 005392 673 KLVLVNGQLVLPN--TELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~l~--~~L~~Gd~v~i 696 (698)
.+.+|||+.++.. ++|++||+|.|
T Consensus 164 NGTfVNG~rI~~~~~~~L~~GD~I~f 189 (205)
T 3elv_A 164 NGTCLNNVVIPGARYIELRSGDVLTL 189 (205)
T ss_dssp SCCEETTEECCBTSCEECCTTCEEES
T ss_pred CCCeECCEECCCCceeECCCCCEEEE
Confidence 4689999999877 47999999975
No 99
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=31.08 E-value=38 Score=32.13 Aligned_cols=40 Identities=23% Similarity=0.120 Sum_probs=31.0
Q ss_pred EEEccCCCeEec--CCCCCHHHHHHHh-CC-----CC------ce-EEEcCEeeC
Q 005392 644 IVCWPNGEIMRL--RSGSTAADAAMKV-GL-----EG------KL-VLVNGQLVL 683 (698)
Q Consensus 644 ~vftp~G~~~~l--~~g~T~~d~a~~i-~~-----~~------~~-~~vNg~~v~ 683 (698)
+-|+-||+-+.+ ++|.|.+|+.... |+ ++ .| |.|||+.+.
T Consensus 5 i~~~vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~vdG~~v~ 59 (161)
T 1rm6_C 5 LRLTLNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLVDDRPRL 59 (161)
T ss_dssp EEEEETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEETTEEEE
T ss_pred EEEEECCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEECCcEEe
Confidence 468999999886 7899999999985 52 22 12 899999764
No 100
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=30.56 E-value=21 Score=31.66 Aligned_cols=23 Identities=9% Similarity=0.329 Sum_probs=20.2
Q ss_pred EEEcCEeeCCC--CcCCCCCEEEEe
Q 005392 675 VLVNGQLVLPN--TELKDGDIVEVR 697 (698)
Q Consensus 675 ~~vNg~~v~l~--~~L~~Gd~v~i~ 697 (698)
.+|||+.+.-+ ++|++||+++|+
T Consensus 66 ~~vng~~l~k~~~~~L~~GD~l~Ll 90 (102)
T 3kt9_A 66 TSIDSVVIGKDQEVKLQPGQVLHMV 90 (102)
T ss_dssp CEETTEECCBTCEEEECTTCCEEEE
T ss_pred CeECCEEcCCCCeEEeCCCCEEEEc
Confidence 57899988877 899999999986
No 101
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=30.35 E-value=30 Score=28.73 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=19.4
Q ss_pred CCeeEEEe----cccccCCCCeEEEcCC
Q 005392 469 GGRELLVA----VSFGLAASEVVADRRP 492 (698)
Q Consensus 469 ngr~l~v~----l~~~L~~gD~Vei~T~ 492 (698)
||+ .++ .++.|+.||.|+|+.+
T Consensus 61 N~~--~v~~~~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 61 NGN--NITSMKGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp SSS--BGGGTCSSSCBCCTTCEEEEECC
T ss_pred CCE--EccccCCCCcCCCCCCEEEEeCC
Confidence 888 787 7999999999999865
No 102
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=30.05 E-value=32 Score=28.87 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.3
Q ss_pred EE-ccCC-CeEecCCCCCHHHHHHHhCCC
Q 005392 645 VC-WPNG-EIMRLRSGSTAADAAMKVGLE 671 (698)
Q Consensus 645 vf-tp~G-~~~~l~~g~T~~d~a~~i~~~ 671 (698)
.| +|+| ..+..++|.|.+|+|.+-|++
T Consensus 5 ~~~~~~g~~~~~~~~g~tlL~a~~~~gi~ 33 (95)
T 1frr_A 5 VLKTPSGEFTLDVPEGTTILDAAEEAGYD 33 (95)
T ss_dssp EEEETTEEEEEEECTTCCHHHHHHHTTCC
T ss_pred EEEeCCCcEEEEeCCCCcHHHHHHHcCCC
Confidence 35 4999 889999999999999999843
No 103
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=29.61 E-value=54 Score=31.24 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=30.6
Q ss_pred EEEEccCCCeEe--cCCCCCHHHHHHH-hCC-----CC------ce-EEEcCEeeC
Q 005392 643 VIVCWPNGEIMR--LRSGSTAADAAMK-VGL-----EG------KL-VLVNGQLVL 683 (698)
Q Consensus 643 v~vftp~G~~~~--l~~g~T~~d~a~~-i~~-----~~------~~-~~vNg~~v~ 683 (698)
.+-|+-||+-+. .++|.|.+|+.+. +|+ ++ .| |.|||+.|.
T Consensus 5 ~i~~~vNG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~vdG~~v~ 60 (163)
T 1ffv_A 5 IITVNVNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDIDGRSVK 60 (163)
T ss_dssp EEEEEETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETTEEEE
T ss_pred eEEEEECCEEEEEecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEECCcEec
Confidence 346888999885 4799999999987 452 22 12 899999864
No 104
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=28.09 E-value=50 Score=31.59 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=30.3
Q ss_pred EEEccCCCeEe--cCCCCCHHHHHHH-hCC-----CC------ce-EEEcCEeeC
Q 005392 644 IVCWPNGEIMR--LRSGSTAADAAMK-VGL-----EG------KL-VLVNGQLVL 683 (698)
Q Consensus 644 ~vftp~G~~~~--l~~g~T~~d~a~~-i~~-----~~------~~-~~vNg~~v~ 683 (698)
+-|+-||+-+. .++|.|.+|+.+. +|+ ++ .| |.|||+.|.
T Consensus 6 i~~~vNG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~vdG~~v~ 60 (166)
T 1n62_A 6 IELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVK 60 (166)
T ss_dssp EEEEETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETTEEEE
T ss_pred EEEEECCEEEEEecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEECCcEEe
Confidence 46888999885 4799999999987 452 22 12 899999874
No 105
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=25.62 E-value=29 Score=34.19 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=13.5
Q ss_pred CCChHHHHHHhhccccc
Q 005392 8 KRAVDTVVAGILHDVVD 24 (698)
Q Consensus 8 ~~d~~tIiAALLHDvVE 24 (698)
....-.+..||+||+.|
T Consensus 63 vd~~r~~~maL~HDl~E 79 (200)
T 3kh1_A 63 VQIGRVARMLLIHDIVE 79 (200)
T ss_dssp CCHHHHHHHHHHTTTTH
T ss_pred CCHHHHHHHHHhcChHH
Confidence 33346788999999999
No 106
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=25.32 E-value=2.2e+02 Score=22.57 Aligned_cols=56 Identities=9% Similarity=0.166 Sum_probs=40.2
Q ss_pred EEEEEccCCCe--EecCCCCCHHHHHHHhC----CCCc--eEEEcCEeeCCCC-----cCCCCCEEEEe
Q 005392 642 VVIVCWPNGEI--MRLRSGSTAADAAMKVG----LEGK--LVLVNGQLVLPNT-----ELKDGDIVEVR 697 (698)
Q Consensus 642 ~v~vftp~G~~--~~l~~g~T~~d~a~~i~----~~~~--~~~vNg~~v~l~~-----~L~~Gd~v~i~ 697 (698)
.|+|=+++|+. +.+++.+|+.|+-.+|. ++.. -...+|+...-+. .+++|+.|.+.
T Consensus 5 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~ 73 (85)
T 3mtn_B 5 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLL 73 (85)
T ss_dssp EEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 46778888876 46789999999877775 5542 2556898775544 45789998875
No 107
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=25.22 E-value=64 Score=27.94 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=25.2
Q ss_pred EEEEccCCC--eEecCCCCCHHHHHHHhCCC
Q 005392 643 VIVCWPNGE--IMRLRSGSTAADAAMKVGLE 671 (698)
Q Consensus 643 v~vftp~G~--~~~l~~g~T~~d~a~~i~~~ 671 (698)
|.+.+|+|. .+..++|.|.+|++.+-|+.
T Consensus 3 vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~ 33 (104)
T 3lxf_A 3 ILVTTRDGTRTEIQAEPGLSLMEALRDAGID 33 (104)
T ss_dssp EEEECTTSCEEEEECCTTSBHHHHHHHTTCT
T ss_pred EEEEeCCCCEEEEEECCCChHHHHHHHcCCC
Confidence 556789997 67899999999999999866
No 108
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=24.72 E-value=68 Score=30.42 Aligned_cols=40 Identities=28% Similarity=0.307 Sum_probs=30.5
Q ss_pred EEEccCCCeEec--CCCCCHHHHHHHh-CCC-C----------ce-EEEcCEeeC
Q 005392 644 IVCWPNGEIMRL--RSGSTAADAAMKV-GLE-G----------KL-VLVNGQLVL 683 (698)
Q Consensus 644 ~vftp~G~~~~l--~~g~T~~d~a~~i-~~~-~----------~~-~~vNg~~v~ 683 (698)
+-|+=||+-+.+ ++|.|.+|++... |+. . .| +.|||+.+.
T Consensus 12 i~~~ing~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~vdG~~v~ 66 (168)
T 1t3q_A 12 ISATINGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILIDGAPMR 66 (168)
T ss_dssp EEEEETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEETTEEEE
T ss_pred EEEEECCEEEEEecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEECCCEee
Confidence 467778887774 9999999999984 743 2 12 899999764
No 109
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=24.30 E-value=50 Score=26.70 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=19.0
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 005392 469 GGRELLVAVSFGLAASEVVADRRP 492 (698)
Q Consensus 469 ngr~l~v~l~~~L~~gD~Vei~T~ 492 (698)
||+. +...++.|+.||.|+++.+
T Consensus 48 N~~~-v~~~~~~l~~gDeV~i~Pp 70 (74)
T 3rpf_C 48 NDHL-IDNLNTPLKDGDVISLLPP 70 (74)
T ss_dssp SSSE-ECCTTCCCCTTCEEEEECC
T ss_pred CCEE-cCCCCcCCCCCCEEEEECC
Confidence 7882 2678999999999999865
No 110
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.27 E-value=1.3e+02 Score=23.70 Aligned_cols=56 Identities=9% Similarity=0.104 Sum_probs=39.0
Q ss_pred EEEEEccCCCe--EecCCCCCHHHHHHHhC----CCCc--eEEEcCEeeCCC-----CcCCCCCEEEEe
Q 005392 642 VVIVCWPNGEI--MRLRSGSTAADAAMKVG----LEGK--LVLVNGQLVLPN-----TELKDGDIVEVR 697 (698)
Q Consensus 642 ~v~vftp~G~~--~~l~~g~T~~d~a~~i~----~~~~--~~~vNg~~v~l~-----~~L~~Gd~v~i~ 697 (698)
.++|-+++|+. +.++...|+.|+-..|. ++.. -...+|+...-+ +-+++|+.|.+.
T Consensus 9 ~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 9 QLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp EEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 45666788874 67899999999888775 4442 256689876433 345688887764
No 111
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=24.14 E-value=31 Score=31.55 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=18.9
Q ss_pred ceEEEcCEee---C-CCCcCCCCCEEEE
Q 005392 673 KLVLVNGQLV---L-PNTELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v---~-l~~~L~~Gd~v~i 696 (698)
.+.+|||+.+ | -.++|++||+|.|
T Consensus 89 NGT~vNg~~i~l~~~~~~~L~~GD~I~l 116 (132)
T 3va4_A 89 NGTQIVKPPRVLPPGVSHRLRDQELILF 116 (132)
T ss_dssp SCEEETTTTEEECTTCCEECCTTCEEEE
T ss_pred CCeEECCEEcccCCCCEEECCCCCEEEE
Confidence 3689999875 2 3478999999986
No 112
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=24.10 E-value=39 Score=29.55 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.2
Q ss_pred ccCCCeEecCCCCCHHHHHHHhCC
Q 005392 647 WPNGEIMRLRSGSTAADAAMKVGL 670 (698)
Q Consensus 647 tp~G~~~~l~~g~T~~d~a~~i~~ 670 (698)
-|+|..+..++|.|.+|+|.+-|+
T Consensus 13 ~~~~~~v~~~~g~tlL~aa~~~Gi 36 (113)
T 3ah7_A 13 CPEGLTVEVKPGTNILELAHDHHI 36 (113)
T ss_dssp BTTCEEEECCTTCBHHHHHHHTTC
T ss_pred CCCCeEEEECCCCcHHHHHHHcCC
Confidence 346799999999999999999994
No 113
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=23.98 E-value=26 Score=40.24 Aligned_cols=46 Identities=11% Similarity=0.028 Sum_probs=37.5
Q ss_pred CCCCCceeee---c----CCceeeeEEEEEccCCeeEEEecccccCCCCeEEEcCCCCcc
Q 005392 444 LKMGHPVIRV---E----GSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQI 496 (698)
Q Consensus 444 lp~g~~v~t~---i----G~~c~gAkV~~v~~ngr~l~v~l~~~L~~gD~Vei~T~~~p~ 496 (698)
.+.|.|+.+. | ...+++|+| ||+ ++.|+++|..+..|+++|.+.+.
T Consensus 14 ~~~~~t~~~~a~~i~~~~~~~~~~~~v-----ng~--~~dl~~~l~~d~~~~~~~~~~~~ 66 (642)
T 1qf6_A 14 YDHAVSPMDVALDIGPGLAKACIAGRV-----NGE--LVDACDLIENDAQLSIITAKDEE 66 (642)
T ss_dssp CSSCBCHHHHHHHHCHHHHHHCSEEEE-----TTE--EEETTSCBCSCEECCEECTTSHH
T ss_pred ecCCCCHHHHHHHhchhhhhheEEEEE-----CCE--EeccccccCCCceEEEeecCcHH
Confidence 5677776655 3 356899999 999 99999999999999999998643
No 114
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=23.95 E-value=21 Score=40.89 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=38.3
Q ss_pred cCCCCCceeee---c----CCceeeeEEEEEccCCeeEEEecccccCCCCeEEEcCCCCcc
Q 005392 443 SLKMGHPVIRV---E----GSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQI 496 (698)
Q Consensus 443 ~lp~g~~v~t~---i----G~~c~gAkV~~v~~ngr~l~v~l~~~L~~gD~Vei~T~~~p~ 496 (698)
+.|.|.|+.+. + ...+++|+| ||+ ++.|+++|..+..|+++|...+.
T Consensus 15 ~~~~g~t~~~ia~~~~~~~~~~~v~~~v-----ng~--~~dl~~~l~~d~~v~~~~~~~~~ 68 (645)
T 1nyr_A 15 AFDKGTTTEDIAQSISPGLRKKAVAGKF-----NGQ--LVDLTKPLETDGSIEIVTPGSEE 68 (645)
T ss_dssp BCCTTCCHHHHHHTTCHHHHHHCCEEEE-----TTE--EECTTSCCCSCBCCCEECTTSHH
T ss_pred EecCCCCHHHHHHHhhhhcccCeEEEEE-----CCE--EEeCCcccCCCCeEEEeeccchh
Confidence 35788887665 3 246899999 999 99999999999999999998643
No 115
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=23.91 E-value=16 Score=36.50 Aligned_cols=18 Identities=39% Similarity=0.542 Sum_probs=13.3
Q ss_pred CCCChHHHHHHhhccccc
Q 005392 7 GKRAVDTVVAGILHDVVD 24 (698)
Q Consensus 7 g~~d~~tIiAALLHDvVE 24 (698)
|....-..+||||||+..
T Consensus 45 ~~d~~~l~~AAlLHDig~ 62 (223)
T 3djb_A 45 GGNRFIIEMAALLHDVAD 62 (223)
T ss_dssp CSCHHHHHHHHTTHHHHC
T ss_pred CCCHHHHHHHHHHhhccc
Confidence 444445678999999985
No 116
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=23.81 E-value=11 Score=37.60 Aligned_cols=27 Identities=30% Similarity=0.640 Sum_probs=22.5
Q ss_pred CCceEEEcCEee-CCCCcCCCCCEEEEe
Q 005392 671 EGKLVLVNGQLV-LPNTELKDGDIVEVR 697 (698)
Q Consensus 671 ~~~~~~vNg~~v-~l~~~L~~Gd~v~i~ 697 (698)
.+..+.|||+.| -+++.++.||+|+|.
T Consensus 118 ~~G~V~VNG~~V~~ps~~Vk~GD~I~V~ 145 (205)
T 3r8n_D 118 SHKAIMVNGRVVNIASYQVSPNDVVSIR 145 (205)
T ss_dssp HTTCCBSSSSBCCCTTCBCCTTBCCBCC
T ss_pred HCCCEEECCEEEccCCcCcCCCCEEEec
Confidence 344589999999 589999999999874
No 117
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=23.69 E-value=54 Score=28.19 Aligned_cols=27 Identities=26% Similarity=0.339 Sum_probs=24.4
Q ss_pred EE-ccCC--CeEecCCCCCHHHHHHHhCCC
Q 005392 645 VC-WPNG--EIMRLRSGSTAADAAMKVGLE 671 (698)
Q Consensus 645 vf-tp~G--~~~~l~~g~T~~d~a~~i~~~ 671 (698)
.| .|+| ..+..++|.|.+|+|.+-|+.
T Consensus 4 ~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~ 33 (106)
T 1uwm_A 4 IFIEHNGTRHEVEAKPGLTVMEAARDNGVP 33 (106)
T ss_dssp EEECTTCCEEEEECCTTSBHHHHHHTTTCT
T ss_pred EEEeCCCCEEEEEECCCCcHHHHHHHcCCC
Confidence 35 8999 899999999999999999976
No 118
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=23.68 E-value=18 Score=33.15 Aligned_cols=24 Identities=4% Similarity=-0.050 Sum_probs=20.0
Q ss_pred ceEEEcCEeeC--CCCcCCCCCEEEE
Q 005392 673 KLVLVNGQLVL--PNTELKDGDIVEV 696 (698)
Q Consensus 673 ~~~~vNg~~v~--l~~~L~~Gd~v~i 696 (698)
.+.+|||+.+. -.++|++||+|.|
T Consensus 100 NGT~vNg~~l~~~~~~~L~~gd~i~~ 125 (140)
T 2jpe_A 100 HGTFLGHIRLEPHKPQQIPIDSTVSF 125 (140)
T ss_dssp SCEESSSCEECSSSCCEECTTCCBBC
T ss_pred CCeEECCEECCCCccEECCCCCEEEE
Confidence 46899999998 4678999999865
No 119
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=23.63 E-value=72 Score=27.40 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=23.8
Q ss_pred EccCC--CeEecCCCCCHHHHHHHhCCC
Q 005392 646 CWPNG--EIMRLRSGSTAADAAMKVGLE 671 (698)
Q Consensus 646 ftp~G--~~~~l~~g~T~~d~a~~i~~~ 671 (698)
.+++| ..+..++|.|.+|+|.+-|+.
T Consensus 6 ~~~~g~~~~~~~~~g~tlLeaa~~~gi~ 33 (106)
T 1xlq_A 6 VSHDGTRRELDVADGVSLMQAAVSNGIY 33 (106)
T ss_dssp ECTTSCEEEEECCTTCBHHHHHHHTTCT
T ss_pred EeCCCCEEEEEECCCCcHHHHHHHcCCC
Confidence 38999 899999999999999999976
No 120
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=22.86 E-value=29 Score=36.97 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=6.9
Q ss_pred hhhhhHHHHHHHHHH
Q 005392 253 ALTSLVACEEALEKE 267 (698)
Q Consensus 253 ~l~~l~~~~~~L~~~ 267 (698)
||+.+..|.+.|.++
T Consensus 224 Al~~y~~~r~~L~~e 238 (388)
T 2ff4_A 224 ALGAYRRVKTTLADD 238 (388)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444555444
No 121
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=22.23 E-value=2.1e+02 Score=23.90 Aligned_cols=56 Identities=9% Similarity=0.211 Sum_probs=39.7
Q ss_pred EEEEEccCCCe--EecCCCCCHHHHHHHhC----CCCc--eEEEcCEeeCCCC-----cCCCCCEEEEe
Q 005392 642 VVIVCWPNGEI--MRLRSGSTAADAAMKVG----LEGK--LVLVNGQLVLPNT-----ELKDGDIVEVR 697 (698)
Q Consensus 642 ~v~vftp~G~~--~~l~~g~T~~d~a~~i~----~~~~--~~~vNg~~v~l~~-----~L~~Gd~v~i~ 697 (698)
.++|=+++|+. +.++...|+.|+-..|. ++.. -...+|+...-+. .+++|+.|.+.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~ 70 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 36677888874 67889999999887775 5542 2566898764443 45689988764
No 122
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=21.79 E-value=70 Score=27.62 Aligned_cols=25 Identities=16% Similarity=0.233 Sum_probs=22.1
Q ss_pred EEccCCC--eEecCCCCCHHHHHHHhC
Q 005392 645 VCWPNGE--IMRLRSGSTAADAAMKVG 669 (698)
Q Consensus 645 vftp~G~--~~~l~~g~T~~d~a~~i~ 669 (698)
+.+|+|. .+..+.|.|.+|+|.+-|
T Consensus 11 ~~~~~g~~~~v~~~~g~tLL~aa~~~g 37 (108)
T 2bt6_A 11 FINRDGETLTTKGKIGDSLLDVVVQNN 37 (108)
T ss_dssp EECTTSCEEEEEEETTCBHHHHHHHTT
T ss_pred EECCCCCEEEEEECCCChHHHHHHHcC
Confidence 3459998 899999999999999988
No 123
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=21.75 E-value=46 Score=29.00 Aligned_cols=23 Identities=39% Similarity=0.775 Sum_probs=20.9
Q ss_pred cCCCeEecCCCCCHHHHHHHhCC
Q 005392 648 PNGEIMRLRSGSTAADAAMKVGL 670 (698)
Q Consensus 648 p~G~~~~l~~g~T~~d~a~~i~~ 670 (698)
|+|..+..++|.|.+|+|.+-|+
T Consensus 14 ~~~~~~~~~~g~tlL~a~~~~gi 36 (111)
T 1i7h_A 14 PDGAVLEANSGETILDAALRNGI 36 (111)
T ss_dssp TTCEEEECCTTCBHHHHHHHTTC
T ss_pred CCCeEEEeCCCCcHHHHHHHcCC
Confidence 47899999999999999999984
No 124
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=21.69 E-value=2.2e+02 Score=23.31 Aligned_cols=59 Identities=8% Similarity=0.228 Sum_probs=41.6
Q ss_pred CCcEEEEEccCCCe--EecCCCCCHHHHHHHhC----CCCc--eEEEcCEeeCCC-----CcCCCCCEEEEe
Q 005392 639 PGEVVIVCWPNGEI--MRLRSGSTAADAAMKVG----LEGK--LVLVNGQLVLPN-----TELKDGDIVEVR 697 (698)
Q Consensus 639 ~~~~v~vftp~G~~--~~l~~g~T~~d~a~~i~----~~~~--~~~vNg~~v~l~-----~~L~~Gd~v~i~ 697 (698)
.+...++.+.+|+. +.+++..|+.|+-..|. ++.. -...+|+...=+ +.+++|+.|.++
T Consensus 10 ~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~ 81 (85)
T 2kd0_A 10 HSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLM 81 (85)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEE
T ss_pred CCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEE
Confidence 35667788888887 57789999999887774 5542 245789876433 345689888764
No 125
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=21.22 E-value=62 Score=27.15 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=19.2
Q ss_pred CCeeEEEe----cccccCCCCeEEEcCC
Q 005392 469 GGRELLVA----VSFGLAASEVVADRRP 492 (698)
Q Consensus 469 ngr~l~v~----l~~~L~~gD~Vei~T~ 492 (698)
||+ .++ +++.|+.||.|.++.+
T Consensus 64 N~~--~v~~~~~~~~~L~~gDeV~i~Pp 89 (93)
T 3dwg_C 64 NDE--DVRFSGGLATAIADGDSVTILPA 89 (93)
T ss_dssp TTE--EGGGTTGGGCBCCTTCEEEEEEC
T ss_pred CCE--EccCcCCCCcCCCCCCEEEEECC
Confidence 888 777 6999999999999865
No 126
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=20.70 E-value=77 Score=28.00 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=33.3
Q ss_pred EecCCCCCHHHHHHHhC--------CCC--------------c---eEEEcCEeeCC---CCcCCCCCEEEEe
Q 005392 653 MRLRSGSTAADAAMKVG--------LEG--------------K---LVLVNGQLVLP---NTELKDGDIVEVR 697 (698)
Q Consensus 653 ~~l~~g~T~~d~a~~i~--------~~~--------------~---~~~vNg~~v~l---~~~L~~Gd~v~i~ 697 (698)
+. |.|+|..|+..... -|+ + +-.|||.++.- +++|+|||.|++.
T Consensus 25 v~-t~g~tL~dvLk~~~~ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~~Ga~~~~v~dGD~i~~~ 96 (101)
T 3u7z_A 25 FD-TDAKYLGEVLESENLVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVNTSADQTPVSDGDAFELT 96 (101)
T ss_dssp EE-ECCSBHHHHHHHTTCEEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECCSCGGGCBCCTTCEEEEE
T ss_pred Ec-CCccHHHHHHHHcCccccccccccceEEEEcCEecCCCCCCEEEEEECCEEhhhchhheEecCCCEEEEE
Confidence 55 88999999887765 111 1 14789999876 7899999999874
No 127
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=20.63 E-value=78 Score=26.59 Aligned_cols=38 Identities=26% Similarity=0.305 Sum_probs=28.6
Q ss_pred ccCC-CeEecCCCCCHHHHHHHhCCC--C--------ce-EEE-cCEeeCC
Q 005392 647 WPNG-EIMRLRSGSTAADAAMKVGLE--G--------KL-VLV-NGQLVLP 684 (698)
Q Consensus 647 tp~G-~~~~l~~g~T~~d~a~~i~~~--~--------~~-~~v-Ng~~v~l 684 (698)
.|+| ..+..++|.|.+|+|.+-|++ . .| ++| +|..-+.
T Consensus 7 ~~~g~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~ 57 (94)
T 1awd_A 7 TPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQS 57 (94)
T ss_dssp ETTEEEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECT
T ss_pred eCCCcEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCCCCEEEEEeCCcCcc
Confidence 4887 789999999999999999843 2 22 565 8865443
No 128
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=20.16 E-value=2.5e+02 Score=21.99 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=39.6
Q ss_pred EEEEEccCCCe---Ee-cCCCCCHHHHHHHhC----CCCc--eEEEcCEeeCC-----CCcCCCCCEEEEe
Q 005392 642 VVIVCWPNGEI---MR-LRSGSTAADAAMKVG----LEGK--LVLVNGQLVLP-----NTELKDGDIVEVR 697 (698)
Q Consensus 642 ~v~vftp~G~~---~~-l~~g~T~~d~a~~i~----~~~~--~~~vNg~~v~l-----~~~L~~Gd~v~i~ 697 (698)
.++|=|++|+. +. +++..|+.|+-..|. ++.. -...+|+...- ++-+++|+.|.+.
T Consensus 4 ~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~ 74 (78)
T 2faz_A 4 WIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLL 74 (78)
T ss_dssp EEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEE
T ss_pred EEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 46778888875 56 899999999888775 5542 24568887643 3455689988764
No 129
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=20.02 E-value=66 Score=27.56 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=24.4
Q ss_pred EE-ccCC--CeEecCCCCCHHHHHHHhCCC
Q 005392 645 VC-WPNG--EIMRLRSGSTAADAAMKVGLE 671 (698)
Q Consensus 645 vf-tp~G--~~~~l~~g~T~~d~a~~i~~~ 671 (698)
.| .++| ..+..++|.|.+|+|.+-|++
T Consensus 4 ~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~ 33 (105)
T 1b9r_A 4 VFIDEQSGEYAVDAQDGQSLMEVATQNGVP 33 (105)
T ss_dssp EECCTTTSCEEEECCTTCCTTHHHHHHTCC
T ss_pred EEEeCCCCEEEEEECCCChHHHHHHHcCCC
Confidence 46 7999 899999999999999999976
Done!