Query 005393
Match_columns 698
No_of_seqs 148 out of 202
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 00:05:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ypd_A Probable JMJC domain-co 100.0 5E-132 2E-136 1057.4 16.3 352 260-683 16-370 (392)
2 4gjz_A Lysine-specific demethy 99.2 4.7E-12 1.6E-16 124.0 5.4 35 602-636 198-232 (235)
3 3k2o_A Bifunctional arginine d 99.1 5.6E-11 1.9E-15 126.6 8.6 53 601-653 252-304 (336)
4 3al5_A HTYW5, JMJC domain-cont 98.9 6.4E-10 2.2E-14 117.9 6.3 42 602-643 237-278 (338)
5 2yu1_A JMJC domain-containing 98.9 8.4E-09 2.9E-13 113.8 14.2 52 601-652 262-313 (451)
6 3k3o_A PHF8, PHD finger protei 98.9 1.1E-08 3.6E-13 110.4 14.2 51 602-652 214-264 (371)
7 3kv4_A PHD finger protein 8; e 98.8 5.9E-09 2E-13 114.9 10.1 51 602-652 298-348 (447)
8 3kv5_D JMJC domain-containing 98.8 9.6E-09 3.3E-13 114.4 10.5 51 602-652 333-383 (488)
9 3kv9_A JMJC domain-containing 98.8 2.5E-08 8.5E-13 108.4 13.0 52 601-652 241-292 (397)
10 3d8c_A Hypoxia-inducible facto 98.8 1.4E-09 4.6E-14 116.1 3.1 40 601-640 257-297 (349)
11 3pua_A GRC5, PHD finger protei 98.7 7.7E-08 2.6E-12 104.4 12.4 52 601-652 240-291 (392)
12 3pur_A Lysine-specific demethy 97.5 5.2E-05 1.8E-09 84.9 4.7 51 602-652 363-413 (528)
13 2xxz_A Lysine-specific demethy 97.2 0.00029 9.9E-09 75.1 6.2 87 539-644 232-318 (332)
14 3avr_A Lysine-specific demethy 97.1 0.0004 1.4E-08 78.0 6.4 89 539-646 291-379 (531)
15 4ask_A Lysine-specific demethy 96.6 0.002 6.7E-08 71.9 6.0 88 539-645 266-353 (510)
16 3dxt_A JMJC domain-containing 96.2 0.0053 1.8E-07 65.9 6.4 94 542-646 210-303 (354)
17 3opt_A DNA damage-responsive t 95.3 0.021 7.2E-07 61.7 6.6 92 542-645 253-345 (373)
18 2ox0_A JMJC domain-containing 95.2 0.029 9.9E-07 60.8 7.2 95 541-646 227-321 (381)
19 1vrb_A Putative asparaginyl hy 93.2 0.057 1.9E-06 57.4 4.2 57 602-661 215-281 (342)
20 2opk_A Hypothetical protein; p 92.0 0.046 1.6E-06 48.4 1.4 24 607-630 75-98 (112)
21 1yhf_A Hypothetical protein SP 91.6 0.076 2.6E-06 45.9 2.2 59 577-642 56-114 (115)
22 3lag_A Uncharacterized protein 91.5 0.063 2.2E-06 46.8 1.7 24 607-630 61-84 (98)
23 2pfw_A Cupin 2, conserved barr 91.4 0.061 2.1E-06 46.6 1.5 58 577-642 50-107 (116)
24 2fc7_A ZZZ3 protein; structure 91.3 0.086 2.9E-06 45.5 2.3 36 91-126 19-59 (82)
25 3fjs_A Uncharacterized protein 91.2 0.076 2.6E-06 46.9 1.9 42 600-642 69-110 (114)
26 3ht1_A REMF protein; cupin fol 91.1 0.1 3.5E-06 46.7 2.7 41 602-642 76-116 (145)
27 2q30_A Uncharacterized protein 90.8 0.068 2.3E-06 45.5 1.1 39 601-641 69-108 (110)
28 1tot_A CREB-binding protein; z 90.7 0.078 2.7E-06 42.0 1.3 33 93-126 6-39 (52)
29 3h8u_A Uncharacterized conserv 90.4 0.11 3.8E-06 45.7 2.2 37 605-641 79-115 (125)
30 1v70_A Probable antibiotics sy 90.2 0.11 3.7E-06 43.3 1.9 38 604-641 66-103 (105)
31 4e2g_A Cupin 2 conserved barre 89.9 0.22 7.5E-06 43.7 3.7 59 577-642 57-115 (126)
32 2fqp_A Hypothetical protein BP 89.8 0.15 5.2E-06 43.3 2.5 25 606-630 60-84 (97)
33 2b8m_A Hypothetical protein MJ 89.6 0.12 4E-06 45.1 1.7 41 603-643 63-106 (117)
34 2dip_A Zinc finger SWIM domain 89.6 0.11 3.9E-06 46.2 1.6 36 90-125 28-65 (98)
35 2ozj_A Cupin 2, conserved barr 89.5 0.12 4E-06 44.9 1.6 35 600-634 71-105 (114)
36 1juh_A Quercetin 2,3-dioxygena 89.5 0.13 4.3E-06 54.6 2.1 40 606-646 292-332 (350)
37 1o5u_A Novel thermotoga mariti 89.1 0.12 4.1E-06 45.5 1.4 31 604-634 67-97 (101)
38 3d82_A Cupin 2, conserved barr 89.0 0.18 6.1E-06 42.2 2.3 27 606-632 69-95 (102)
39 2xlg_A SLL1785 protein, CUCA; 88.8 0.24 8.1E-06 50.3 3.4 77 576-655 58-163 (239)
40 2e5r_A Dystrobrevin alpha; ZZ 88.5 0.17 5.8E-06 41.5 1.8 33 94-126 12-46 (63)
41 2gu9_A Tetracenomycin polyketi 88.3 0.22 7.5E-06 42.3 2.5 41 602-642 59-99 (113)
42 3kgz_A Cupin 2 conserved barre 88.2 0.24 8.3E-06 46.7 2.9 41 602-642 79-119 (156)
43 3ibm_A Cupin 2, conserved barr 88.0 0.22 7.4E-06 47.3 2.4 61 576-642 71-132 (167)
44 2ozi_A Hypothetical protein RP 87.6 0.17 5.7E-06 44.3 1.3 23 608-630 62-84 (98)
45 3h7j_A Bacilysin biosynthesis 87.2 0.18 6.3E-06 50.3 1.5 60 577-642 162-221 (243)
46 2i45_A Hypothetical protein; n 86.0 0.34 1.2E-05 41.6 2.3 37 605-644 67-103 (107)
47 1y9q_A Transcriptional regulat 85.7 0.24 8.2E-06 47.1 1.4 43 600-643 139-181 (192)
48 1lr5_A Auxin binding protein 1 84.5 0.33 1.1E-05 45.1 1.6 25 605-629 88-112 (163)
49 3cew_A Uncharacterized cupin p 84.5 0.35 1.2E-05 42.6 1.7 29 601-629 62-90 (125)
50 2oa2_A BH2720 protein; 1017534 84.4 0.46 1.6E-05 43.6 2.5 25 606-630 89-113 (148)
51 4axo_A EUTQ, ethanolamine util 84.1 0.44 1.5E-05 45.3 2.4 61 578-645 80-140 (151)
52 3jzv_A Uncharacterized protein 84.1 0.37 1.3E-05 46.0 1.8 30 601-630 87-116 (166)
53 3l2h_A Putative sugar phosphat 84.1 0.48 1.6E-05 43.8 2.5 41 602-642 83-124 (162)
54 1vj2_A Novel manganese-contain 83.4 0.4 1.4E-05 42.7 1.7 47 578-630 65-111 (126)
55 3lwc_A Uncharacterized protein 83.1 0.54 1.8E-05 42.3 2.4 37 604-642 76-113 (119)
56 4i4a_A Similar to unknown prot 82.5 1.4 4.8E-05 38.6 4.9 57 600-660 67-125 (128)
57 1x82_A Glucose-6-phosphate iso 82.0 0.62 2.1E-05 45.0 2.5 40 603-642 117-156 (190)
58 2o8q_A Hypothetical protein; c 81.7 0.73 2.5E-05 41.0 2.7 61 577-643 59-120 (134)
59 3bcw_A Uncharacterized protein 81.6 0.5 1.7E-05 43.0 1.6 30 607-636 89-118 (123)
60 3rns_A Cupin 2 conserved barre 81.3 0.55 1.9E-05 46.4 1.9 49 577-631 169-218 (227)
61 4h7l_A Uncharacterized protein 80.0 0.29 1E-05 47.0 -0.5 47 576-627 60-108 (157)
62 2bnm_A Epoxidase; oxidoreducta 79.9 0.69 2.3E-05 43.9 2.0 45 578-628 137-185 (198)
63 1qwr_A Mannose-6-phosphate iso 79.2 0.66 2.3E-05 48.8 1.7 17 609-625 162-178 (319)
64 3i7d_A Sugar phosphate isomera 78.7 1 3.5E-05 42.3 2.8 59 578-641 61-121 (163)
65 1y3t_A Hypothetical protein YX 78.7 0.78 2.7E-05 47.0 2.1 50 600-650 252-301 (337)
66 1zx5_A Mannosephosphate isomer 78.4 0.72 2.5E-05 48.2 1.7 18 608-625 161-178 (300)
67 1fi2_A Oxalate oxidase, germin 78.3 1.2 4.2E-05 43.1 3.2 39 605-643 119-157 (201)
68 2f4p_A Hypothetical protein TM 77.3 1.2 4E-05 41.1 2.6 35 607-641 89-123 (147)
69 1o4t_A Putative oxalate decarb 77.0 0.86 2.9E-05 41.0 1.6 31 600-630 91-121 (133)
70 3rns_A Cupin 2 conserved barre 75.6 0.93 3.2E-05 44.7 1.6 56 575-636 51-106 (227)
71 1rc6_A Hypothetical protein YL 75.1 0.89 3E-05 45.7 1.3 48 578-630 196-243 (261)
72 1dgw_A Canavalin; duplicated s 73.9 1.1 3.8E-05 42.8 1.6 27 604-630 82-108 (178)
73 2pyt_A Ethanolamine utilizatio 73.9 1.5 5.1E-05 40.3 2.4 35 602-636 90-124 (133)
74 2wfp_A Mannose-6-phosphate iso 73.7 1.1 3.9E-05 48.5 1.7 15 610-624 245-259 (394)
75 2vqa_A SLL1358 protein, MNCA; 73.5 1 3.6E-05 46.9 1.4 55 606-661 279-333 (361)
76 1sef_A Conserved hypothetical 72.3 1.3 4.4E-05 44.9 1.7 31 600-630 216-246 (274)
77 3h7j_A Bacilysin biosynthesis 72.1 1.3 4.6E-05 44.0 1.7 48 577-630 50-98 (243)
78 1pmi_A PMI, phosphomannose iso 71.7 1.3 4.6E-05 48.7 1.7 16 609-624 270-285 (440)
79 1y3t_A Hypothetical protein YX 71.7 1.5 5E-05 44.9 1.9 48 600-648 80-127 (337)
80 4e2q_A Ureidoglycine aminohydr 71.0 1.4 4.7E-05 45.6 1.6 29 600-628 220-248 (266)
81 2vpv_A Protein MIF2, MIF2P; nu 70.9 2.1 7.1E-05 41.3 2.7 29 602-630 125-153 (166)
82 1juh_A Quercetin 2,3-dioxygena 70.2 1.4 4.9E-05 46.5 1.5 70 577-652 66-140 (350)
83 4diq_A Lysine-specific demethy 70.0 2.4 8.1E-05 47.5 3.3 42 600-641 223-266 (489)
84 2xdv_A MYC-induced nuclear ant 69.4 2.4 8.2E-05 46.7 3.1 31 599-629 193-223 (442)
85 1j58_A YVRK protein; cupin, de 68.1 1.6 5.6E-05 46.0 1.4 27 604-630 300-326 (385)
86 2d40_A Z3393, putative gentisa 68.0 2.3 7.7E-05 45.2 2.5 40 602-641 136-175 (354)
87 1sq4_A GLXB, glyoxylate-induce 66.8 1.9 6.5E-05 44.2 1.6 31 600-630 103-133 (278)
88 3nw4_A Gentisate 1,2-dioxygena 65.2 2.9 0.0001 45.1 2.7 28 602-629 139-166 (368)
89 1sfn_A Conserved hypothetical 65.0 2.3 7.8E-05 42.6 1.7 32 599-630 198-229 (246)
90 3bu7_A Gentisate 1,2-dioxygena 64.9 2.9 9.8E-05 45.5 2.6 29 601-629 328-356 (394)
91 1zrr_A E-2/E-2' protein; nicke 61.7 5 0.00017 39.0 3.4 37 606-642 123-159 (179)
92 2ct7_A Ring finger protein 31; 61.6 4.5 0.00015 34.5 2.7 39 85-123 16-59 (86)
93 1sfn_A Conserved hypothetical 60.7 2.9 9.8E-05 41.8 1.5 31 601-631 82-112 (246)
94 2vqa_A SLL1358 protein, MNCA; 59.1 2.5 8.4E-05 44.1 0.7 25 605-629 96-120 (361)
95 4b29_A Dimethylsulfoniopropion 58.9 3.2 0.00011 41.9 1.5 46 578-629 149-195 (217)
96 3es1_A Cupin 2, conserved barr 58.0 4 0.00014 39.5 1.9 35 606-641 119-153 (172)
97 2d5f_A Glycinin A3B4 subunit; 57.1 4 0.00014 45.6 2.0 31 610-640 118-148 (493)
98 1vr3_A Acireductone dioxygenas 56.9 5.8 0.0002 39.1 2.9 37 606-642 128-164 (191)
99 4e2q_A Ureidoglycine aminohydr 56.3 3.6 0.00012 42.5 1.4 24 606-629 110-133 (266)
100 1sef_A Conserved hypothetical 55.0 4.2 0.00014 41.1 1.7 31 600-630 97-127 (274)
101 1sq4_A GLXB, glyoxylate-induce 55.0 3.8 0.00013 42.0 1.3 31 600-630 225-255 (278)
102 1rc6_A Hypothetical protein YL 54.8 5.5 0.00019 39.8 2.5 30 601-630 95-124 (261)
103 2e9q_A 11S globulin subunit be 54.3 4.1 0.00014 45.1 1.5 34 609-642 131-164 (459)
104 2d40_A Z3393, putative gentisa 51.9 6.8 0.00023 41.5 2.7 27 602-628 303-329 (354)
105 3c3v_A Arachin ARAH3 isoform; 50.0 5.8 0.0002 44.6 1.8 34 610-643 131-164 (510)
106 3bu7_A Gentisate 1,2-dioxygena 49.9 7.3 0.00025 42.3 2.6 27 601-627 158-184 (394)
107 2arc_A ARAC, arabinose operon 49.1 8.7 0.0003 34.3 2.6 30 600-629 51-80 (164)
108 1fxz_A Glycinin G1; proglycini 47.7 6.6 0.00022 43.6 1.8 29 607-635 115-143 (476)
109 2y0o_A Probable D-lyxose ketol 46.6 7.7 0.00026 37.8 1.9 41 604-646 117-158 (175)
110 3cjx_A Protein of unknown func 46.4 8.2 0.00028 36.9 2.1 33 610-642 85-126 (165)
111 1vq8_T 50S ribosomal protein L 43.8 6.6 0.00023 36.2 0.9 42 578-621 14-55 (120)
112 2cav_A Protein (canavalin); vi 43.6 7.7 0.00026 42.7 1.5 25 605-629 128-152 (445)
113 1v5n_A PDI-like hypothetical p 40.6 9.8 0.00033 32.9 1.4 31 93-123 47-77 (89)
114 1fxz_A Glycinin G1; proglycini 40.4 11 0.00037 41.9 2.1 85 575-661 352-440 (476)
115 3j21_U 50S ribosomal protein L 40.3 8.1 0.00028 35.6 0.9 40 579-620 18-57 (121)
116 1uij_A Beta subunit of beta co 37.7 12 0.00043 40.6 2.0 46 578-628 65-114 (416)
117 3avr_A Lysine-specific demethy 35.2 31 0.001 39.0 4.7 36 90-125 455-495 (531)
118 3c3v_A Arachin ARAH3 isoform; 35.1 15 0.00051 41.3 2.1 102 538-641 351-453 (510)
119 2o1q_A Putative acetyl/propion 33.0 15 0.0005 33.9 1.4 55 575-635 58-115 (145)
120 2ea7_A 7S globulin-1; beta bar 32.7 18 0.00061 39.6 2.3 26 604-629 102-127 (434)
121 1j58_A YVRK protein; cupin, de 32.4 20 0.00068 37.6 2.5 48 577-630 95-147 (385)
122 2yw8_A RUN and FYVE domain-con 31.7 26 0.00089 29.5 2.6 34 89-123 15-51 (82)
123 2jmo_A Parkin; IBR, E3 ligase, 31.2 32 0.0011 28.9 3.1 34 90-123 22-66 (80)
124 1zbd_B Rabphilin-3A; G protein 29.4 31 0.0011 32.0 3.0 72 51-126 17-91 (134)
125 2d5f_A Glycinin A3B4 subunit; 29.1 13 0.00044 41.5 0.3 122 538-663 346-468 (493)
126 1z2q_A LM5-1; membrane protein 28.9 41 0.0014 28.4 3.4 36 88-124 16-54 (84)
127 2vrw_B P95VAV, VAV1, proto-onc 27.6 32 0.0011 36.4 3.1 37 90-126 354-393 (406)
128 3nw4_A Gentisate 1,2-dioxygena 27.1 31 0.0011 37.2 2.8 31 602-632 314-344 (368)
129 3j20_Y 30S ribosomal protein S 27.0 28 0.00094 27.2 1.8 25 92-116 18-46 (50)
130 3kgl_A Cruciferin; 11S SEED gl 26.7 22 0.00075 39.5 1.7 22 610-631 150-171 (466)
131 2hqh_E Restin; beta/BETA struc 26.6 17 0.00059 25.1 0.5 9 92-100 2-10 (26)
132 1x4u_A Zinc finger, FYVE domai 26.3 33 0.0011 29.0 2.3 34 89-123 10-46 (84)
133 3qac_A 11S globulin SEED stora 25.6 27 0.00093 38.7 2.1 34 610-643 135-168 (465)
134 2pzo_E CAP-Gly domain-containi 25.2 19 0.00064 27.5 0.5 12 90-101 17-28 (42)
135 3zyq_A Hepatocyte growth facto 25.1 1.3E+02 0.0046 29.6 6.9 61 64-124 129-197 (226)
136 2zet_C Melanophilin; complex, 24.6 17 0.00057 34.6 0.2 35 92-126 67-104 (153)
137 2zkr_t 60S ribosomal protein L 21.4 14 0.00047 35.1 -1.1 42 578-621 20-61 (145)
138 1zx5_A Mannosephosphate isomer 20.9 32 0.0011 35.8 1.4 20 608-627 268-288 (300)
No 1
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.9e-132 Score=1057.42 Aligned_cols=352 Identities=32% Similarity=0.548 Sum_probs=272.9
Q ss_pred CCCCchhhHHHHHHHhhcCCCEEEEccccccCCCCCChhHHHHHHhhhccccccccCCceeEeecCCCceeecchhhhhc
Q 005393 260 TKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFK 339 (698)
Q Consensus 260 ~d~~~~~~~~~FQ~hW~kGePVIVr~vl~~~s~lsW~P~~mwra~~e~~~~~~~~~~~~vkaidCl~~~evei~~~~Ff~ 339 (698)
.|..+.+|++|||+||++|||||||||++++++++|+|++||++|++. .+++|||++|++++|++++||+
T Consensus 16 ~d~~~~~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~gd~----------~~~lidC~~~~~~~i~v~~Ff~ 85 (392)
T 2ypd_A 16 KDYKNSSNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGDH----------QADLLNCKDSIISNANVKEFWD 85 (392)
T ss_dssp CCTTCTTHHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHTTS----------CCCCEETTTCCBCSCCHHHHHH
T ss_pred cCCCCcccHHHHHHHHhCCCcEEEechhhhCcCCccCHHHHHHHhcCc----------eeeeeeCCCCccccCcHHHHhh
Confidence 455556899999999999999999999999999999999999998742 3678999999999999999999
Q ss_pred cccCCcc---CCCCccceeecCCCCCCCchhhhcccchHHHHhCCCCcccCCCCCccccccccCCCCCCCCCCCcchhhc
Q 005393 340 GYTQGRT---YDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIA 416 (698)
Q Consensus 340 Gy~~gr~---~~~~wp~mLKLKDWPps~~F~e~lP~h~~efi~~LP~~eYt~pr~G~LNLA~~LP~~~lkPDLGPK~YIA 416 (698)
||++++. ++++||+|||||||||+++|+++||+||+|||++|||||||||+ |+|||||+||+++++||||||||||
T Consensus 86 Gf~~~~~r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p~-G~LNLAs~LP~~~~kPDLGPK~YiA 164 (392)
T 2ypd_A 86 GFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCSA 164 (392)
T ss_dssp TSSBGGGC------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHSTT-CTTCCTTTSCGGGCC---CCEEEEE
T ss_pred hccccccCCcCCCCCcceeeecCCCChHHHHHHhHHHHHHHHHcCCchHhhCCC-ccchHHHhCCCCCCCCCCCcchhhh
Confidence 9998753 57999999999999999999999999999999999999999985 9999999999999999999999999
Q ss_pred cccccccCCCCCcccccccccccchhhhcccccccchhhHHHHHHHHHHHHhhhhhhhhccCCCCccccCCCCCCCCCCC
Q 005393 417 YGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDT 496 (698)
Q Consensus 417 YG~~eelg~gdSvTkLH~DmSDAVNiL~h~~ev~~~~~~~~~i~~l~~~~~~q~~~e~~~~~~~~~~~~e~~~~~~~~~~ 496 (698)
||+++++|+|+|||||||||||||||||||+.++... ..... ...+++.+++..+.+
T Consensus 165 YG~~~~~~~~~gvT~LH~DmsDaVNiL~h~~~~~~~~-~~~~~-~~l~~~~~~~~d~~~--------------------- 221 (392)
T 2ypd_A 165 YGVVAAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNG-ILSKA-GILKKFEEEDLDDIL--------------------- 221 (392)
T ss_dssp CCSTTTTCTTCCSEEEEECSSEEEEEEEEEECCBCTT-CCCHH-HHHHHHHTSCCCHHH---------------------
T ss_pred cCcchhcccCCCcceeeeehhhhhhhhheecccCccc-cchhh-hhhhhhhhccccHHH---------------------
Confidence 9999999999999999999999999999998654222 11111 122222221110000
Q ss_pred ccccccccCCCCCCcccccccccccccCCccccCCCCCCcCCCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCc
Q 005393 497 DVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQ 576 (698)
Q Consensus 497 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrreDv~KLreyL~kh~~Ef~~~~~~p~~~ 576 (698)
+ .++. +..+.+||+||||||||++|||+||++|++||. .++.+
T Consensus 222 ---~--------------~r~~----------------~~~~~~GAlW~Ifr~~D~~klr~~L~~~~~e~~----~~~~~ 264 (392)
T 2ypd_A 222 ---R--------------KRLK----------------DSSEIPGALWHIYAGKDVDKIREFLQKISKEQG----LEVLP 264 (392)
T ss_dssp ---H--------------HHHT----------------CTTCCEEEEEEEECGGGHHHHHHHHHHHHHHHC---------
T ss_pred ---h--------------hhcc----------------CCCCCCCceeeeeCHhhHHHHHHHHHHHHHhhC----CCccC
Confidence 0 0000 013578999999999999999999999999983 46788
Q ss_pred cccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccccccccccCcccHHHHHHHHHHhhc
Q 005393 577 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRL 656 (698)
Q Consensus 577 v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteEfR~ 656 (698)
+.||||||+||||++||++|+|||||+||||+|++|||||||||||||||||+||||||+||||||||++|++||+|||+
T Consensus 265 ~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~spe~~~~c~~lt~E~R~ 344 (392)
T 2ypd_A 265 EHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRL 344 (392)
T ss_dssp -CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECCGGGHHHHHHHHHHC--
T ss_pred CCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHHhcccchhhHhhhhcChhhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhcccchhhhhheeeeehhhhhc
Q 005393 657 LPKNHRAREDKLEVYLVFIKRKCYVHE 683 (698)
Q Consensus 657 Lp~~H~~keDkLevkkm~l~~~~~~~~ 683 (698)
|| +|++||||||||||+||++..+..
T Consensus 345 l~-~~~~~edkLqvk~m~~~av~~av~ 370 (392)
T 2ypd_A 345 LK-EEINYDDKLQVKNILYHAVKEMVR 370 (392)
T ss_dssp ---------------------------
T ss_pred cc-hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 96 699999999999999998665543
No 2
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=99.23 E-value=4.7e-12 Score=123.97 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=32.0
Q ss_pred ccceEEEeecCceEEecCCCccccccccccccccc
Q 005393 602 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 636 (698)
Q Consensus 602 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAl 636 (698)
+.++.++|.+||++|||+|..|||+||..||.|..
T Consensus 198 ~~~~~~~l~pGD~LyiP~gW~H~V~~l~~sisvn~ 232 (235)
T 4gjz_A 198 APFLSCILSPGEILFIPVKYWHYVRALDLSFSVSF 232 (235)
T ss_dssp CCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEE
T ss_pred CCcEEEEECCCCEEEeCCCCcEEEEECCCEEEEEE
Confidence 57899999999999999999999999999887753
No 3
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=99.14 E-value=5.6e-11 Score=126.58 Aligned_cols=53 Identities=32% Similarity=0.444 Sum_probs=50.4
Q ss_pred CccceEEEeecCceEEecCCCccccccccccccccccccCcccHHHHHHHHHH
Q 005393 601 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKE 653 (698)
Q Consensus 601 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteE 653 (698)
+..++.++|.+||++|||+|..|||+||..||.|+..|++|.|+...+++|-+
T Consensus 252 ~~~~~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~~~~~~~~ 304 (336)
T 3k2o_A 252 EFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVR 304 (336)
T ss_dssp GGCCEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHHHHHHHH
T ss_pred cCceEEEEECCCCEEEeCCCCcEEEecCCCeEEEEcccCCcccHHHHHHHHHh
Confidence 46889999999999999999999999999999999999999999999999864
No 4
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=98.93 E-value=6.4e-10 Score=117.89 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=39.4
Q ss_pred ccceEEEeecCceEEecCCCccccccccccccccccccCccc
Q 005393 602 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 643 (698)
Q Consensus 602 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 643 (698)
+.++.+++.+||++|||+|..|||+||-.||.|..-|.++..
T Consensus 237 ~~~~~~~L~pGD~LyiP~gWwH~v~~l~~sisvn~~~~~~~~ 278 (338)
T 3al5_A 237 ARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLPS 278 (338)
T ss_dssp CCEEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECSSCG
T ss_pred CCCEEEEECCCCEEEECCCCeEEEeeCCCEEEEEEEecCCcc
Confidence 579999999999999999999999999999999999988764
No 5
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=98.91 E-value=8.4e-09 Score=113.79 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=48.9
Q ss_pred CccceEEEeecCceEEecCCCccccccccccccccccccCcccHHHHHHHHH
Q 005393 601 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 652 (698)
Q Consensus 601 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLte 652 (698)
.-+++.++|..||++|||+|.-|||.||..||-|+..|++.-|+..-+++++
T Consensus 262 ~~~~~~v~l~pGE~LfIPsGWwH~V~nledsIait~NF~~~~nl~~~l~~~~ 313 (451)
T 2yu1_A 262 VSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYN 313 (451)
T ss_dssp SSCCEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCSSSHHHHHHHHH
T ss_pred cccceEEEECCCcEEEeCCCceEEEecCCCeEEEeeeeCCcccHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999888865
No 6
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=98.90 E-value=1.1e-08 Score=110.42 Aligned_cols=51 Identities=24% Similarity=0.402 Sum_probs=49.2
Q ss_pred ccceEEEeecCceEEecCCCccccccccccccccccccCcccHHHHHHHHH
Q 005393 602 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 652 (698)
Q Consensus 602 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLte 652 (698)
.+++.++|.+||++|||+|..|||.||.+||-|+..|++..|+...++..+
T Consensus 214 ~~~~ev~l~pGEtLfIPsGWwH~V~nledSIai~~NFl~~~nl~~~l~~~~ 264 (371)
T 3k3o_A 214 DKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYE 264 (371)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred CceEEEEECCCcEEEeCCCCeEEEecCCCeEEECCcccchhhHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999876
No 7
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=98.84 E-value=5.9e-09 Score=114.88 Aligned_cols=51 Identities=24% Similarity=0.402 Sum_probs=49.3
Q ss_pred ccceEEEeecCceEEecCCCccccccccccccccccccCcccHHHHHHHHH
Q 005393 602 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 652 (698)
Q Consensus 602 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLte 652 (698)
.+++.++|..||++|||+|..|||.||.+||-|+..|++..|+..-++..+
T Consensus 298 ~~~~~v~l~pGetlfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~ 348 (447)
T 3kv4_A 298 DKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYE 348 (447)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEESSCEEEEEEEECCSTTHHHHHHHHH
T ss_pred cceEEEEECCCcEEecCCCCeEEEecCCCEEEEccccccccCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999877
No 8
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=98.81 E-value=9.6e-09 Score=114.37 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=48.3
Q ss_pred ccceEEEeecCceEEecCCCccccccccccccccccccCcccHHHHHHHHH
Q 005393 602 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 652 (698)
Q Consensus 602 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLte 652 (698)
.+++.++|.+||++|||+|..|||.||..||-|...|++..|+...++..+
T Consensus 333 ~~~~~~~l~pGe~lfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~ 383 (488)
T 3kv5_D 333 DKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYE 383 (488)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred cceEEEeeCCCCEEEeCCCceEEeeCCCCeEEEccccCCccCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999888654
No 9
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=98.80 E-value=2.5e-08 Score=108.37 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=48.3
Q ss_pred CccceEEEeecCceEEecCCCccccccccccccccccccCcccHHHHHHHHH
Q 005393 601 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 652 (698)
Q Consensus 601 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLte 652 (698)
..+++.++|.+||++|||+|..|||.||..+|-|...|+++.|+...++..+
T Consensus 241 ~~~~~~v~l~pGe~lfIPsGW~H~V~nledSIai~~NFl~~~nl~~~l~~~~ 292 (397)
T 3kv9_A 241 VDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYE 292 (397)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred cCceEEEEECCCCEEEeCCCCeEEccCCcCeEEECCcccCchhHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999998887644
No 10
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=98.80 E-value=1.4e-09 Score=116.06 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=36.2
Q ss_pred CccceEEEeecCceEEecCCCcccccccc-ccccccccccC
Q 005393 601 GVEPWTFEQKLGEAVFIPAGCPHQVRNLK-SCTKVAVDFVS 640 (698)
Q Consensus 601 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~-SCIKVAlDFVS 640 (698)
.+.++.+++.+||++|||+|..|||+||. .++.|++.|..
T Consensus 257 ~~~~~~~~l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w~ 297 (349)
T 3d8c_A 257 NVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 297 (349)
T ss_dssp GCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEE
T ss_pred cCCcEEEEECCCCEEEECCCCcEEEEEcCCCCcEEEEEEEc
Confidence 35799999999999999999999999998 58888888865
No 11
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=98.69 E-value=7.7e-08 Score=104.35 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=49.5
Q ss_pred CccceEEEeecCceEEecCCCccccccccccccccccccCcccHHHHHHHHH
Q 005393 601 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 652 (698)
Q Consensus 601 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLte 652 (698)
..+++.++|..||++|||+|..|||.|+.+||-|...|++..|+..-++..+
T Consensus 240 ~~~~~ev~l~pGEtlfIPsGWwH~V~nledSIai~gNFl~~~nl~~~l~~~~ 291 (392)
T 3pua_A 240 VDKCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYE 291 (392)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCTTCHHHHHHHHH
T ss_pred ccceEEEEECCCcEEeeCCCceEEEecCCCEEEEcCcccChhhHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999988877
No 12
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=97.52 E-value=5.2e-05 Score=84.90 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=46.9
Q ss_pred ccceEEEeecCceEEecCCCccccccccccccccccccCcccHHHHHHHHH
Q 005393 602 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 652 (698)
Q Consensus 602 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLte 652 (698)
.....++|..||++|||||..|+|.|+..||-|...|++..|+..-+++++
T Consensus 363 ~~~~~v~l~pGEtlfIPsGW~HaV~tleDSIaiggNFl~~~nl~~qlri~~ 413 (528)
T 3pur_A 363 GAVKRVVIKEGQTLLIPAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMRVYH 413 (528)
T ss_dssp TCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCGGGHHHHHHHHH
T ss_pred ccEEEEEECCCCEEEecCCceEEEecCCCeEEEcCcccchhhHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999888654
No 13
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=97.24 E-value=0.00029 Score=75.09 Aligned_cols=87 Identities=18% Similarity=0.300 Sum_probs=71.5
Q ss_pred CCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCccccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEec
Q 005393 539 SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIP 618 (698)
Q Consensus 539 ~~GAlWdIFrreDv~KLreyL~kh~~Ef~~~~~~p~~~v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIP 618 (698)
.+--+|=.=..+.+.|++++++++. .| ++.+.++++.+- |++ .||.=+.|+|++||.|+|+
T Consensus 232 p~~~~Wy~VP~e~~~~~e~l~~k~~--------------~d-~~~~~~~~~p~~---L~~-~gIPvyr~~QkpGd~Vi~~ 292 (332)
T 2xxz_A 232 PGDCEWFAVHEHYWETISAFCDRHG--------------VD-YLTGSWWPILDD---LYA-SNIPVYRFVQRPGDLVWIN 292 (332)
T ss_dssp ESCEEEEEECGGGHHHHHHHHHHTT--------------CC-TTTSCBCCCHHH---HHH-TTCCCEEEEECTTCEEEEC
T ss_pred CCceEEEEECHHHHHHHHHHHHhcC--------------Cc-hhhceecCCHHH---HHh-CCCCeEEEEECCCCEEEEC
Confidence 3556899999999999999998632 12 234567776643 333 5999999999999999999
Q ss_pred CCCccccccccccccccccccCcccH
Q 005393 619 AGCPHQVRNLKSCTKVAVDFVSPENV 644 (698)
Q Consensus 619 AGcPHQVrNL~SCIKVAlDFVSPEnV 644 (698)
+||-|||.|.=-|+++|..|..|...
T Consensus 293 PgayH~v~n~G~~~n~awN~a~~~~~ 318 (332)
T 2xxz_A 293 AGTVHWVQATGWCNNIAWNVGPLTAY 318 (332)
T ss_dssp TTCEEEEEESSSEEEEEEEEESCTTG
T ss_pred CCceEEEEecceeeEEEEEeCCCcHH
Confidence 99999999999999999999998765
No 14
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=97.15 E-value=0.0004 Score=78.04 Aligned_cols=89 Identities=21% Similarity=0.293 Sum_probs=73.5
Q ss_pred CCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCccccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEec
Q 005393 539 SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIP 618 (698)
Q Consensus 539 ~~GAlWdIFrreDv~KLreyL~kh~~Ef~~~~~~p~~~v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIP 618 (698)
.+-.+|=.=..++..|++++++++- .|. +...++++.+. |+ +.||.-+.|+|++||.|+++
T Consensus 291 gg~~~Wy~VP~e~~~k~e~l~~k~~--------------~~~-~~~~~~~~p~~---L~-~~gIPvyr~vQkpGd~Vi~~ 351 (531)
T 3avr_A 291 PGDCEWFVVPEGYWGVLNDFCEKNN--------------LNF-LMGSWWPNLED---LY-EANVPVYRFIQRPGDLVWIN 351 (531)
T ss_dssp ESCEEEEEECGGGHHHHHHHHHHTT--------------CCT-TTSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEEC
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHcC--------------CCh-hhceeecCHHH---HH-hCCCCeEEEEECCCCEEEEC
Confidence 4456899999999999999998651 232 34567776543 33 35999999999999999999
Q ss_pred CCCccccccccccccccccccCcccHHH
Q 005393 619 AGCPHQVRNLKSCTKVAVDFVSPENVDE 646 (698)
Q Consensus 619 AGcPHQVrNL~SCIKVAlDFVSPEnV~e 646 (698)
+||.|||.|+=-|+++|..|..|.-..-
T Consensus 352 PgayH~v~n~G~~~n~awN~a~~~~~q~ 379 (531)
T 3avr_A 352 AGTVHWVQAIGWCNNIAWNVGPLTACQY 379 (531)
T ss_dssp TTCEEEEEESSSEEEEEEEECCSSHHHH
T ss_pred CCceEEEEecceeeeeEEEeccCchHHH
Confidence 9999999999999999999999997653
No 15
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=96.59 E-value=0.002 Score=71.87 Aligned_cols=88 Identities=18% Similarity=0.272 Sum_probs=71.6
Q ss_pred CCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCccccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEec
Q 005393 539 SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIP 618 (698)
Q Consensus 539 ~~GAlWdIFrreDv~KLreyL~kh~~Ef~~~~~~p~~~v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIP 618 (698)
.+--+|=.=..+...+++++++++.. +. +.+.++.+.+. |+ +.||.=+.|+|++||.|+++
T Consensus 266 gg~c~WY~VP~e~~~k~e~l~~k~~~--------------d~-l~~~~~pspe~---L~-kagIPvyr~iQkPGdfVit~ 326 (510)
T 4ask_A 266 PGDCEWFAVHEHYWETISAFCDRHGV--------------DY-LTGSWWPILDD---LY-ASNIPVYRFVQRPGDLVWIN 326 (510)
T ss_dssp ESCEEEEEECGGGHHHHHHHHHHTTC--------------CT-TTSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEEC
T ss_pred CCceeEEEECHHHHHHHHHHHHHhCc--------------ch-hhccccCCHHH---HH-hCCCCeEEEEECCCCEEEEC
Confidence 45569999999999999999886421 22 33567776653 33 47999999999999999999
Q ss_pred CCCccccccccccccccccccCcccHH
Q 005393 619 AGCPHQVRNLKSCTKVAVDFVSPENVD 645 (698)
Q Consensus 619 AGcPHQVrNL~SCIKVAlDFVSPEnV~ 645 (698)
+|+.|+|.|.==|+++|-.|.-|-...
T Consensus 327 PgtyH~Vqs~Gf~~niaWNvap~t~~q 353 (510)
T 4ask_A 327 AGTVHWVQATGWCNNIAWNVGPLTAYQ 353 (510)
T ss_dssp TTCEEEEEESSSEEEEEEEECBSSHHH
T ss_pred CCceEEEEecCeeeeeEEEecCCCHHH
Confidence 999999999999999999998886443
No 16
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=96.22 E-value=0.0053 Score=65.94 Aligned_cols=94 Identities=21% Similarity=0.215 Sum_probs=78.7
Q ss_pred eEEEeecCCChhHHHHHHHHHHHhhccccCCCCCccccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCC
Q 005393 542 ALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 621 (698)
Q Consensus 542 AlWdIFrreDv~KLreyL~kh~~Ef~~~~~~p~~~v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGc 621 (698)
-+|=.-.+++..|+++++++.+.+.- ..|. +=+|.+.+.++++. |+ +.||.-.+++|++||.|++-.|+
T Consensus 210 K~WY~VP~~~~~kfE~l~k~~~p~~~-~~c~------~fL~h~~~lisP~~---L~-~~GIpv~~~vQ~pGEfViTfP~a 278 (354)
T 3dxt_A 210 KTWYVVPPEHGQRLERLARELFPGSS-RGCG------AFLRHKVALISPTV---LK-ENGIPFNRITQEAGEFMVTFPYG 278 (354)
T ss_dssp EEEEEECGGGHHHHHHHHHHHSHHHH-HHCT------TGGGGCCEEECHHH---HH-HTTCCCEEEEECTTCEEEECTTC
T ss_pred eEEEEeCHHHHHHHHHHHHHhCchhh-hhcH------HHHhcCcccCCHHH---HH-HCCCceEEEEeCCCcEEEECCCc
Confidence 49999999999999999998865421 1232 22566788899873 44 47999999999999999999999
Q ss_pred ccccccccccccccccccCcccHHH
Q 005393 622 PHQVRNLKSCTKVAVDFVSPENVDE 646 (698)
Q Consensus 622 PHQVrNL~SCIKVAlDFVSPEnV~e 646 (698)
-|.|.|+--++..|..|..|.=+..
T Consensus 279 YH~gfn~Gfn~aEAvNFA~~~Wl~~ 303 (354)
T 3dxt_A 279 YHAGFNHGFNCAEAINFATPRWIDY 303 (354)
T ss_dssp EEEEEESSSEEEEEEEECCGGGHHH
T ss_pred eEEEeeccccHhHhhccCcHHHHHh
Confidence 9999999999999999999987764
No 17
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=95.32 E-value=0.021 Score=61.70 Aligned_cols=92 Identities=20% Similarity=0.239 Sum_probs=74.8
Q ss_pred eEEEeecCCChhHHHHHHHHHHHh-hccccCCCCCccccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCC
Q 005393 542 ALWDIFRRQDVPKLEAYLRKHFKE-FRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAG 620 (698)
Q Consensus 542 AlWdIFrreDv~KLreyL~kh~~E-f~~~~~~p~~~v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAG 620 (698)
-+|=.-.++++.|+++++++++.+ |. .|. +=+|...+.+++. .|+ +.||.-.+++|++||.|++=.|
T Consensus 253 K~WY~VP~~~~~kfE~l~k~~~p~~~~--~c~------~fL~h~~~lisP~---~L~-~~GIpv~r~vQ~pGEfViTfP~ 320 (373)
T 3opt_A 253 KQWYSIPQEDRFKFYKFMQEQFPEEAK--NCP------EFLRHKMFLASPK---LLQ-ENGIRCNEIVHHEGEFMITYPY 320 (373)
T ss_dssp EEEEECCGGGHHHHHHHHHHSSHHHHS--SCS------SCTTTSCEEECHH---HHH-TTTCCCEEEEECTTCEEEECTT
T ss_pred eEEEEeCHHHHHHHHHHHHHhChhhhh--hCH------HHhhCCcccCCHH---HHH-hcCCceEEEEECCCCEEEECCC
Confidence 489999999999999999988754 32 232 2356677888885 344 4799999999999999999999
Q ss_pred CccccccccccccccccccCcccHH
Q 005393 621 CPHQVRNLKSCTKVAVDFVSPENVD 645 (698)
Q Consensus 621 cPHQVrNL~SCIKVAlDFVSPEnV~ 645 (698)
+=|.|.|+--++..|..|..|+=+.
T Consensus 321 aYH~gfn~Gfn~aEAvNFA~~~Wl~ 345 (373)
T 3opt_A 321 GYHAGFNYGYNLAESVNFALEEWLP 345 (373)
T ss_dssp CCEEEEESSSEEEEEEEECCC----
T ss_pred ceEEEEecCccHHHHHccCcHHHHH
Confidence 9999999999999999999987654
No 18
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=95.18 E-value=0.029 Score=60.84 Aligned_cols=95 Identities=16% Similarity=0.138 Sum_probs=78.5
Q ss_pred ceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCccccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCC
Q 005393 541 GALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAG 620 (698)
Q Consensus 541 GAlWdIFrreDv~KLreyL~kh~~Ef~~~~~~p~~~v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAG 620 (698)
--.|=.=.++++.|+++++++.+.+.-. .| .+=+|...+.++++. |+ +.||.-.+++|++||.|++=.|
T Consensus 227 pK~WY~VP~~~~~kfE~l~~~~~P~~~~-~~------~~~L~h~~~~isP~~---L~-~~GIpv~r~vQ~pGEfViTfP~ 295 (381)
T 2ox0_A 227 PKSWYSVPPEHGKRLERLAKGFFPGSAQ-SC------EAFLRHKMTLISPLM---LK-KYGIPFDKVTQEAGEFMITFPY 295 (381)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHSHHHHH-HC------TTGGGGSCEEECHHH---HH-HTTCCCEEEEECTTCEEEECTT
T ss_pred ceEEEecCHHHHHHHHHHHHHhChhhhh-cc------hHHhhccccccCHHH---HH-HCCCceEEEEecCCCEEEECCC
Confidence 3589999999999999999998654211 23 233566788888853 33 4799999999999999999999
Q ss_pred CccccccccccccccccccCcccHHH
Q 005393 621 CPHQVRNLKSCTKVAVDFVSPENVDE 646 (698)
Q Consensus 621 cPHQVrNL~SCIKVAlDFVSPEnV~e 646 (698)
+=|.|.|+=-++..|..|..|.=+..
T Consensus 296 aYH~gfn~GfN~aEAvNFA~~~Wl~~ 321 (381)
T 2ox0_A 296 GYHAGFNHGFNCAESTNFATRRWIEY 321 (381)
T ss_dssp CEEEEEECSSEEEEEEEECCTTHHHH
T ss_pred cEEEeecCcccHHHHhccCcHHHHHH
Confidence 99999999999999999998876654
No 19
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=93.18 E-value=0.057 Score=57.38 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=41.9
Q ss_pred ccceEEEeecCceEEecCCCccccccc--cccccccccccCcccHHHHHHH--------HHHhhcCCchh
Q 005393 602 VEPWTFEQKLGEAVFIPAGCPHQVRNL--KSCTKVAVDFVSPENVDECLRL--------TKEFRLLPKNH 661 (698)
Q Consensus 602 VepWtf~Q~~GEAVFIPAGcPHQVrNL--~SCIKVAlDFVSPEnV~ec~rL--------teEfR~Lp~~H 661 (698)
..++.++-.+||+.|||+|.+|||+++ ..|+.|.+- +| +..+-+.- ..+||.||...
T Consensus 215 ~~~~~~~L~pGD~LyiP~gwwH~v~s~~~~~slsvsi~--~~-~~~dll~~~l~~~~~~~~~~r~lp~~~ 281 (342)
T 1vrb_A 215 PDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFG--QP-AWLDLMLAALRKKLISDNRFRELAVNH 281 (342)
T ss_dssp CSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEEC--CC-BHHHHHHHHHHHHHTTSGGGGSBCCCT
T ss_pred CCceEEEECCCcEEEeCCCccEEEEECCCCceEEEEEC--CC-cHHHHHHHHHHHHHHhCHHhhhCCCcc
Confidence 567999999999999999999999999 468888877 55 33332211 23677766543
No 20
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=92.02 E-value=0.046 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.6
Q ss_pred EEeecCceEEecCCCccccccccc
Q 005393 607 FEQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 607 f~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
+.=+.||.|+||||.||+++|.-.
T Consensus 75 ~~l~~Gd~i~ipa~~~H~~~n~~~ 98 (112)
T 2opk_A 75 RVMRPGDWLHVPAHCRHRVAWTDG 98 (112)
T ss_dssp EEECTTEEEEECTTCCEEEEEECS
T ss_pred EEECCCCEEEECCCCcEEEEeCCC
Confidence 444679999999999999999863
No 21
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=91.55 E-value=0.076 Score=45.88 Aligned_cols=59 Identities=25% Similarity=0.429 Sum_probs=39.0
Q ss_pred cccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccccccccccCcc
Q 005393 577 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 642 (698)
Q Consensus 577 v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 642 (698)
..|+ +++-+|+..-.- ++.+..=++.=..||+++||+|.||+++|...+.-+.+ ++.|+
T Consensus 56 H~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~v-~~~~~ 114 (115)
T 1yhf_A 56 HSSP-GDAMVTILSGLA-----EITIDQETYRVAEGQTIVMPAGIPHALYAVEAFQMLLV-VVKPE 114 (115)
T ss_dssp ECCS-SEEEEEEEESEE-----EEEETTEEEEEETTCEEEECTTSCEEEEESSCEEEEEE-EECSC
T ss_pred EECC-CcEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCCceEEEE-EEccC
Confidence 3455 456666654432 13345556777899999999999999999876543333 33444
No 22
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=91.51 E-value=0.063 Score=46.77 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEeecCceEEecCCCccccccccc
Q 005393 607 FEQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 607 f~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
+.-..||++|||+|.+|++.|.-+
T Consensus 61 ~~l~~G~~~~ip~G~~H~~~N~g~ 84 (98)
T 3lag_A 61 AQLKTGRSYARKAGVQHDVRNEST 84 (98)
T ss_dssp CCBCTTCCEEECTTCEEEEBCCSS
T ss_pred EEecCCcEEEEcCCCcEECEECCC
Confidence 445789999999999999999753
No 23
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=91.40 E-value=0.061 Score=46.55 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=39.3
Q ss_pred cccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccccccccccCcc
Q 005393 577 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 642 (698)
Q Consensus 577 v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 642 (698)
..|| .+|-+|+-.-.- ++-+..=++.=..||+++||+|.||+++|...|. .+...+|.
T Consensus 50 H~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~--~l~v~~p~ 107 (116)
T 2pfw_A 50 HAHR-HSQVSYVVEGEF-----HVNVDGVIKVLTAGDSFFVPPHVDHGAVCPTGGI--LIDTFSPA 107 (116)
T ss_dssp ECCS-SEEEEEEEEECE-----EEEETTEEEEECTTCEEEECTTCCEEEEESSCEE--EEEEEESC
T ss_pred EECC-cceEEEEEeeEE-----EEEECCEEEEeCCCCEEEECcCCceeeEeCCCcE--EEEEECCc
Confidence 4566 666666643322 1334444677789999999999999999998763 34444553
No 24
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=91.31 E-value=0.086 Score=45.49 Aligned_cols=36 Identities=19% Similarity=0.676 Sum_probs=30.5
Q ss_pred CCceecCCCcc-ccccccccCCCCC----cccchhchHHHh
Q 005393 91 DERVYCNHCAT-SIIDLHRSCPKCS----YELCLTCCKEIC 126 (698)
Q Consensus 91 DERvyCD~C~T-SI~D~HRsC~~Cs----ydLCL~CC~ELR 126 (698)
-..+.||.|.. +|+-.-..|..|. ||||..|....+
T Consensus 19 H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~ 59 (82)
T 2fc7_A 19 HVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLH 59 (82)
T ss_dssp ESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCC
T ss_pred eCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCcc
Confidence 34678999996 8999999999996 999999997544
No 25
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=91.17 E-value=0.076 Score=46.95 Aligned_cols=42 Identities=21% Similarity=0.402 Sum_probs=31.1
Q ss_pred hCccceEEEeecCceEEecCCCccccccccccccccccccCcc
Q 005393 600 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 642 (698)
Q Consensus 600 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 642 (698)
+-|..=++.=..||+|+||+|.||+++|...+. +.+-+|.|.
T Consensus 69 ~~i~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~-~~~~~v~p~ 110 (114)
T 3fjs_A 69 IGVDGAQRRLHQGDLLYLGAGAAHDVNAITNTS-LLVTVVLVD 110 (114)
T ss_dssp EEETTEEEEECTTEEEEECTTCCEEEEESSSEE-EEEEEECC-
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEeCCCcE-EEEEEEeCC
Confidence 445555778889999999999999999997653 333455554
No 26
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=91.11 E-value=0.1 Score=46.69 Aligned_cols=41 Identities=32% Similarity=0.244 Sum_probs=31.0
Q ss_pred ccceEEEeecCceEEecCCCccccccccccccccccccCcc
Q 005393 602 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 642 (698)
Q Consensus 602 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 642 (698)
+..=++.=..||+|+||+|.||+++|...---+.+-+++|.
T Consensus 76 ~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~i~~~~ 116 (145)
T 3ht1_A 76 DQGRTEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVVAPCE 116 (145)
T ss_dssp GGTEEEEECTTCEEEECTTCCBEEECCTTCCEEEEEEEESC
T ss_pred ECCEEEEECCCCEEEECCCCeEEeEcCCCCCEEEEEEECCC
Confidence 44556777899999999999999999866544455555554
No 27
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=90.77 E-value=0.068 Score=45.50 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=29.5
Q ss_pred Ccc-ceEEEeecCceEEecCCCccccccccccccccccccCc
Q 005393 601 GVE-PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 641 (698)
Q Consensus 601 GVe-pWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSP 641 (698)
.++ .=++.=..||+++||||.||+++|...+. .+..++|
T Consensus 69 ~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~--~l~~~~p 108 (110)
T 2q30_A 69 VGDGDAVIPAPRGAVLVAPISTPHGVRAVTDMK--VLVTIAP 108 (110)
T ss_dssp ECGGGCEEEECTTEEEEEETTSCEEEEESSSEE--EEEEEES
T ss_pred EeCCCEEEEECCCCEEEeCCCCcEEEEEcCCcE--EEEEECC
Confidence 344 45677789999999999999999988753 3444454
No 28
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=90.69 E-value=0.078 Score=42.02 Aligned_cols=33 Identities=27% Similarity=0.863 Sum_probs=28.2
Q ss_pred ceecCCCccccccccccCCCC-CcccchhchHHHh
Q 005393 93 RVYCNHCATSIIDLHRSCPKC-SYELCLTCCKEIC 126 (698)
Q Consensus 93 RvyCD~C~TSI~D~HRsC~~C-sydLCL~CC~ELR 126 (698)
.+.||+|...| -.-..|..| .||||..|...-+
T Consensus 6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~ 39 (52)
T 1tot_A 6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKS 39 (52)
T ss_dssp CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHHC
T ss_pred EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCCC
Confidence 47899999996 677889999 6999999998744
No 29
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=90.39 E-value=0.11 Score=45.68 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=28.6
Q ss_pred eEEEeecCceEEecCCCccccccccccccccccccCc
Q 005393 605 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 641 (698)
Q Consensus 605 Wtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSP 641 (698)
=++.=..||+|+||+|.||+++|..+---+.+.+++|
T Consensus 79 ~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~~p 115 (125)
T 3h8u_A 79 IVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAP 115 (125)
T ss_dssp CEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEES
T ss_pred eEEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEECC
Confidence 3556678999999999999999987654455555655
No 30
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=90.23 E-value=0.11 Score=43.27 Aligned_cols=38 Identities=32% Similarity=0.414 Sum_probs=26.5
Q ss_pred ceEEEeecCceEEecCCCccccccccccccccccccCc
Q 005393 604 PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 641 (698)
Q Consensus 604 pWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSP 641 (698)
.=++.=..||+++||+|.||+++|..+---+.+-+++|
T Consensus 66 ~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~v~~p 103 (105)
T 1v70_A 66 EEEALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAP 103 (105)
T ss_dssp TEEEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEES
T ss_pred CEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEeCC
Confidence 33566689999999999999999985422233334444
No 31
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=89.93 E-value=0.22 Score=43.74 Aligned_cols=59 Identities=27% Similarity=0.359 Sum_probs=40.5
Q ss_pred cccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccccccccccCcc
Q 005393 577 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 642 (698)
Q Consensus 577 v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 642 (698)
..|| ++|-+|+-.-.- ++-|..-++.=..||+|+||+|.||.++|... --+.+.+++|-
T Consensus 57 H~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~-~~~~l~v~~p~ 115 (126)
T 4e2g_A 57 HEHP-HEQAGVMLEGTL-----ELTIGEETRVLRPGMAYTIPGGVRHRARTFED-GCLVLDIFSPP 115 (126)
T ss_dssp ECCS-SEEEEEEEEECE-----EEEETTEEEEECTTEEEEECTTCCEEEECCTT-CEEEEEEEESC
T ss_pred ccCC-CceEEEEEEeEE-----EEEECCEEEEeCCCCEEEECCCCcEEeEECCC-CEEEEEEECCC
Confidence 3566 466666544322 23445556777899999999999999999988 33455666664
No 32
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=89.76 E-value=0.15 Score=43.34 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.5
Q ss_pred EEEeecCceEEecCCCccccccccc
Q 005393 606 TFEQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 606 tf~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
++.=..||+|+||||.||+++|.-+
T Consensus 60 ~~~l~~Gd~~~~p~~~~H~~~N~g~ 84 (97)
T 2fqp_A 60 TSQLTRGVSYTRPEGVEHNVINPSD 84 (97)
T ss_dssp EEEECTTCCEEECTTCEEEEECCSS
T ss_pred EEEEcCCCEEEeCCCCcccCEeCCC
Confidence 4556789999999999999999864
No 33
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=89.63 E-value=0.12 Score=45.12 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=28.6
Q ss_pred cceEE-EeecCceEEecCCCcccccccccc--ccccccccCccc
Q 005393 603 EPWTF-EQKLGEAVFIPAGCPHQVRNLKSC--TKVAVDFVSPEN 643 (698)
Q Consensus 603 epWtf-~Q~~GEAVFIPAGcPHQVrNL~SC--IKVAlDFVSPEn 643 (698)
..-++ .=..||+++||+|.||+++|..+. .-+.+.|-+|+.
T Consensus 63 ~~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i~~~~~~~ 106 (117)
T 2b8m_A 63 EDQEPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAPHPKK 106 (117)
T ss_dssp TTSCCEEEETTCEEEECTTCEEEEECCSSSEEEEEEEECSCGGG
T ss_pred CCEEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCCCCC
Confidence 33344 667899999999999999998653 334444444443
No 34
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=89.59 E-value=0.11 Score=46.17 Aligned_cols=36 Identities=28% Similarity=0.731 Sum_probs=30.5
Q ss_pred CCCceecCCCcc-ccccccccCCCC-CcccchhchHHH
Q 005393 90 NDERVYCNHCAT-SIIDLHRSCPKC-SYELCLTCCKEI 125 (698)
Q Consensus 90 ~DERvyCD~C~T-SI~D~HRsC~~C-sydLCL~CC~EL 125 (698)
.-..+.||.|.. +|.-+-..|..| .||||..|...-
T Consensus 28 ~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~ 65 (98)
T 2dip_A 28 KHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY 65 (98)
T ss_dssp SCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT
T ss_pred ccCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccC
Confidence 334589999996 799999999999 899999997743
No 35
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=89.49 E-value=0.12 Score=44.91 Aligned_cols=35 Identities=9% Similarity=0.137 Sum_probs=28.1
Q ss_pred hCccceEEEeecCceEEecCCCccccccccccccc
Q 005393 600 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKV 634 (698)
Q Consensus 600 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKV 634 (698)
+.|..=++.=..||+++||||.||.++|...|.=+
T Consensus 71 ~~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~ 105 (114)
T 2ozj_A 71 ITFDDQKIDLVPEDVLMVPAHKIHAIAGKGRFKML 105 (114)
T ss_dssp EEETTEEEEECTTCEEEECTTCCBEEEEEEEEEEE
T ss_pred EEECCEEEEecCCCEEEECCCCcEEEEeCCCcEEE
Confidence 44556677788999999999999999998665433
No 36
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=89.46 E-value=0.13 Score=54.59 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=34.0
Q ss_pred EEEeecCceEEecCCCccccccccccccccccccCc-ccHHH
Q 005393 606 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP-ENVDE 646 (698)
Q Consensus 606 tf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSP-EnV~e 646 (698)
++.=+.||+||||||.||+++|.... |..+=|.+| ..++.
T Consensus 292 ~~~l~~Gd~~~iPag~~h~~~~~~~~-~~~l~~~~g~~g~~~ 332 (350)
T 1juh_A 292 ATELGSGDVAFIPGGVEFKYYSEAYF-SKVLFVSSGSDGLDQ 332 (350)
T ss_dssp CEEECTTCEEEECTTCCEEEEESSSS-EEEEEEEESSSSHHH
T ss_pred EEEeCCCCEEEECCCCCEEEEecCCe-EEEEEEecCccchhh
Confidence 45567899999999999999998776 888888888 77766
No 37
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=89.13 E-value=0.12 Score=45.49 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=25.9
Q ss_pred ceEEEeecCceEEecCCCccccccccccccc
Q 005393 604 PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKV 634 (698)
Q Consensus 604 pWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKV 634 (698)
.-++.=..||+|+||||.||+.+|....-|+
T Consensus 67 g~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~ 97 (101)
T 1o5u_A 67 GKKYVIEKGDLVTFPKGLRCRWKVLEPVRKH 97 (101)
T ss_dssp CCEEEEETTCEEEECTTCEEEEEEEEEEEEE
T ss_pred CCEEEECCCCEEEECCCCcEEEEeCCCeeEE
Confidence 4567788999999999999999998765443
No 38
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=89.01 E-value=0.18 Score=42.25 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=22.8
Q ss_pred EEEeecCceEEecCCCccccccccccc
Q 005393 606 TFEQKLGEAVFIPAGCPHQVRNLKSCT 632 (698)
Q Consensus 606 tf~Q~~GEAVFIPAGcPHQVrNL~SCI 632 (698)
++.=..||+++||+|.+|+++|...|.
T Consensus 69 ~~~l~~Gd~~~ip~~~~H~~~~~~~~~ 95 (102)
T 3d82_A 69 NITLQAGEMYVIPKGVEHKPMAKEECK 95 (102)
T ss_dssp EEEEETTEEEEECTTCCBEEEEEEEEE
T ss_pred EEEEcCCCEEEECCCCeEeeEcCCCCE
Confidence 455578999999999999999986554
No 39
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=88.76 E-value=0.24 Score=50.29 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=53.0
Q ss_pred ccccCccCcceecCHHHHHHHHHHh--------Cccce----------EEEeecCceEEecCCCccccccccccc-cccc
Q 005393 576 QVIHPIHDQCFYLSSEHKKKLKEEF--------GVEPW----------TFEQKLGEAVFIPAGCPHQVRNLKSCT-KVAV 636 (698)
Q Consensus 576 ~v~dPIHDQ~fYL~~~hk~kLkeEy--------GVepW----------tf~Q~~GEAVFIPAGcPHQVrNL~SCI-KVAl 636 (698)
...||-.+..||+-.-.-. + .. |-++| ++.=..||.||||+|.||..+|.-+-- ++.+
T Consensus 58 ~H~H~~~~E~~yVLeG~~~-~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~H~~~N~~~~~~~~~l 134 (239)
T 2xlg_A 58 PHIHYFINEWFWTPEGGIE-L--FHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGFVNPTDKTLPIVF 134 (239)
T ss_dssp SEEESSEEEEEEETTCCCE-E--EEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEEEEEECCSSSCEEEEE
T ss_pred CeECCCccEEEEEEEeEEE-E--EEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCCEEEEeCCCCCEEEEE
Confidence 3467766777776544221 1 12 44555 788889999999999999999976532 2213
Q ss_pred ccc----------CcccHHHHHHHHHHhh
Q 005393 637 DFV----------SPENVDECLRLTKEFR 655 (698)
Q Consensus 637 DFV----------SPEnV~ec~rLteEfR 655 (698)
=++ +|....++++...+..
T Consensus 135 ~~~~~~~~~~~~~~p~~~e~~f~~l~~~~ 163 (239)
T 2xlg_A 135 VWMRNEVAPDFPYHDGGMREYFQAVGPRI 163 (239)
T ss_dssp EEEECSSCTTCSCTTCSHHHHHHHHSCBC
T ss_pred EEEecccChhhccCcchHHHHHHHhhhhc
Confidence 334 8888999998887654
No 40
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.49 E-value=0.17 Score=41.52 Aligned_cols=33 Identities=30% Similarity=0.822 Sum_probs=29.4
Q ss_pred eecCCCcc-ccccccccCCCC-CcccchhchHHHh
Q 005393 94 VYCNHCAT-SIIDLHRSCPKC-SYELCLTCCKEIC 126 (698)
Q Consensus 94 vyCD~C~T-SI~D~HRsC~~C-sydLCL~CC~ELR 126 (698)
+.||.|.. +|.-.-..|..| .||||..|...-+
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~ 46 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGH 46 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCC
Confidence 78999996 599999999999 7999999998644
No 41
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=88.33 E-value=0.22 Score=42.26 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=29.2
Q ss_pred ccceEEEeecCceEEecCCCccccccccccccccccccCcc
Q 005393 602 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 642 (698)
Q Consensus 602 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 642 (698)
|..=++.=..||+++||+|.+|+.+|..+---+.+-+++|.
T Consensus 59 ~~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~~~~ 99 (113)
T 2gu9_A 59 VDGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYHPP 99 (113)
T ss_dssp ETTEEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEESC
T ss_pred ECCEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCC
Confidence 33446677899999999999999999865333334445554
No 42
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=88.21 E-value=0.24 Score=46.71 Aligned_cols=41 Identities=24% Similarity=0.173 Sum_probs=29.5
Q ss_pred ccceEEEeecCceEEecCCCccccccccccccccccccCcc
Q 005393 602 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 642 (698)
Q Consensus 602 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 642 (698)
|..=++.=..||+||||+|.+|+++|..+---+-+-.++|+
T Consensus 79 v~g~~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~~~~ 119 (156)
T 3kgz_A 79 VGETISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCVVNAA 119 (156)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEECCSSSCEEEEEEEESS
T ss_pred ECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEeCC
Confidence 44446677889999999999999999875433334444444
No 43
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=88.04 E-value=0.22 Score=47.32 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=40.2
Q ss_pred ccccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCcccccccc-ccccccccccCcc
Q 005393 576 QVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLK-SCTKVAVDFVSPE 642 (698)
Q Consensus 576 ~v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~-SCIKVAlDFVSPE 642 (698)
...|+ ++|-+|+-.--- ++-|..=++.=..||+||||+|.||+++|.. +---+.+-+++|+
T Consensus 71 ~H~H~-~~E~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~ 132 (167)
T 3ibm_A 71 LERHE-HTHVVMVVRGHA-----EVVLDDRVEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSD 132 (167)
T ss_dssp CBBCS-SCEEEEEEESEE-----EEEETTEEEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEEESS
T ss_pred CccCC-CcEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeCC
Confidence 34566 677677654332 2344555777789999999999999999987 4322333445554
No 44
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=87.63 E-value=0.17 Score=44.32 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.3
Q ss_pred EeecCceEEecCCCccccccccc
Q 005393 608 EQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 608 ~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
.=+.||++++|||.+|+++|--+
T Consensus 62 ~l~aGd~~~~p~G~~H~~~N~g~ 84 (98)
T 2ozi_A 62 QLKTGRSYARKAGVQHDVRNEST 84 (98)
T ss_dssp CBCTTCCEEECTTCEEEEEECSS
T ss_pred EECCCCEEEECCCCceeCEECCC
Confidence 44689999999999999999765
No 45
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=87.22 E-value=0.18 Score=50.26 Aligned_cols=60 Identities=22% Similarity=0.180 Sum_probs=41.0
Q ss_pred cccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccccccccccCcc
Q 005393 577 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 642 (698)
Q Consensus 577 v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 642 (698)
..|| +.|-+|+..-.- ++.|..=++.=..||+|+||+|+||+++|.-+---+.++.++|-
T Consensus 162 H~H~-~~e~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~p~ 221 (243)
T 3h7j_A 162 HKHR-NEQIGICIGGGY-----DMTVEGCTVEMKFGTAYFCEPREDHGAINRSEKESKSINIFFPP 221 (243)
T ss_dssp ECCS-SEEEEEECSSCE-----EEEETTEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEEESC
T ss_pred EeCC-CcEEEEEEECEE-----EEEECCEEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcCC
Confidence 3565 567677654422 23444556677899999999999999999866444556666664
No 46
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=85.97 E-value=0.34 Score=41.56 Aligned_cols=37 Identities=19% Similarity=0.410 Sum_probs=26.6
Q ss_pred eEEEeecCceEEecCCCccccccccccccccccccCcccH
Q 005393 605 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENV 644 (698)
Q Consensus 605 Wtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV 644 (698)
=++.=..||+++||+|.||..+|...|.=+ ++.|...
T Consensus 67 ~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l---~i~~~~~ 103 (107)
T 2i45_A 67 GSMTIREGEMAVVPKSVSHRPRSENGCSLV---LIELSDP 103 (107)
T ss_dssp CEEEECTTEEEEECTTCCEEEEEEEEEEEE---EEECC--
T ss_pred cEEEECCCCEEEECCCCcEeeEeCCCeEEE---EEECCCc
Confidence 467778899999999999999997654322 3455443
No 47
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=85.74 E-value=0.24 Score=47.09 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=33.3
Q ss_pred hCccceEEEeecCceEEecCCCccccccccccccccccccCccc
Q 005393 600 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 643 (698)
Q Consensus 600 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 643 (698)
+.|..=++.=..||+|+||+|.||+.+|.-+--- .+-++.|..
T Consensus 139 ~~~~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~~-~l~v~~~~~ 181 (192)
T 1y9q_A 139 VFFDEQWHELQQGEHIRFFSDQPHGYAAVTEKAV-FQNIVAYPR 181 (192)
T ss_dssp EEETTEEEEECTTCEEEEECSSSEEEEESSSCEE-EEEEEECCC
T ss_pred EEECCEEEEeCCCCEEEEcCCCCeEeECCCCCcE-EEEEEecCc
Confidence 4556667788999999999999999999855332 666777654
No 48
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=84.51 E-value=0.33 Score=45.08 Aligned_cols=25 Identities=28% Similarity=0.237 Sum_probs=23.2
Q ss_pred eEEEeecCceEEecCCCcccccccc
Q 005393 605 WTFEQKLGEAVFIPAGCPHQVRNLK 629 (698)
Q Consensus 605 Wtf~Q~~GEAVFIPAGcPHQVrNL~ 629 (698)
-++.=..||+|+||+|.||+++|..
T Consensus 88 ~~~~l~~Gd~i~ip~~~~H~~~n~~ 112 (163)
T 1lr5_A 88 QEIPFFQNTTFSIPVNDPHQVWNSD 112 (163)
T ss_dssp EEEEECTTEEEEECTTCCEEEECCC
T ss_pred EEEEeCCCCEEEECCCCcEEeEeCC
Confidence 7788889999999999999999986
No 49
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=84.47 E-value=0.35 Score=42.63 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=24.5
Q ss_pred CccceEEEeecCceEEecCCCcccccccc
Q 005393 601 GVEPWTFEQKLGEAVFIPAGCPHQVRNLK 629 (698)
Q Consensus 601 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~ 629 (698)
.|..-++.=..||+|+||+|.||+.+|..
T Consensus 62 ~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~ 90 (125)
T 3cew_A 62 TIDGEKIELQAGDWLRIAPDGKRQISAAS 90 (125)
T ss_dssp EETTEEEEEETTEEEEECTTCCEEEEEBT
T ss_pred EECCEEEEeCCCCEEEECCCCcEEEEcCC
Confidence 34456677889999999999999999984
No 50
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=84.35 E-value=0.46 Score=43.55 Aligned_cols=25 Identities=40% Similarity=0.375 Sum_probs=21.9
Q ss_pred EEEeecCceEEecCCCccccccccc
Q 005393 606 TFEQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 606 tf~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
++.=..||+|+||+|.||+++|..+
T Consensus 89 ~~~l~~Gd~i~ip~g~~H~~~n~~~ 113 (148)
T 2oa2_A 89 QEEVFDDYAILIPAGTWHNVRNTGN 113 (148)
T ss_dssp EEEEETTCEEEECTTCEEEEEECSS
T ss_pred eEEECCCCEEEECCCCcEEEEECCC
Confidence 3677899999999999999999754
No 51
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=84.10 E-value=0.44 Score=45.33 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=42.3
Q ss_pred ccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccccccccccCcccHH
Q 005393 578 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVD 645 (698)
Q Consensus 578 ~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ 645 (698)
.|.=+++.+|+-+-.- +.-|.+=++.=..||+||||+|.||..+|...|..+++ ++|-+..
T Consensus 80 ~~~~~eE~~yVLeG~~-----~l~i~g~~~~l~~GD~i~iP~G~~h~~~n~~~a~~l~V--~~P~~~~ 140 (151)
T 4axo_A 80 WTLNYDEIDYVIDGTL-----DIIIDGRKVSASSGELIFIPKGSKIQFSVPDYARFIYV--TYPADWA 140 (151)
T ss_dssp EECSSEEEEEEEEEEE-----EEEETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEE--EECSCC-
T ss_pred EeCCCcEEEEEEEeEE-----EEEECCEEEEEcCCCEEEECCCCEEEEEeCCCEEEEEE--ECCCCcc
Confidence 3444677777644221 12345567888999999999999999999988877776 4565443
No 52
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=84.10 E-value=0.37 Score=45.97 Aligned_cols=30 Identities=23% Similarity=0.008 Sum_probs=24.7
Q ss_pred CccceEEEeecCceEEecCCCccccccccc
Q 005393 601 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 601 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
-|..=++.=..||+|+||+|.||+++|..+
T Consensus 87 ~v~g~~~~l~~GD~i~ip~g~~H~~~n~~~ 116 (166)
T 3jzv_A 87 MVGRAVSAVAPYDLVTIPGWSWHQFRAPAD 116 (166)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEECCTT
T ss_pred EECCEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 344556777899999999999999999654
No 53
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=84.07 E-value=0.48 Score=43.84 Aligned_cols=41 Identities=20% Similarity=0.136 Sum_probs=30.6
Q ss_pred ccceEEEeecCceEEecCC-CccccccccccccccccccCcc
Q 005393 602 VEPWTFEQKLGEAVFIPAG-CPHQVRNLKSCTKVAVDFVSPE 642 (698)
Q Consensus 602 VepWtf~Q~~GEAVFIPAG-cPHQVrNL~SCIKVAlDFVSPE 642 (698)
|..=++.=..||+|+||+| .+|+++|.-+---+.+-+.+|-
T Consensus 83 ~~~~~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~v~~p~ 124 (162)
T 3l2h_A 83 MENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQRL 124 (162)
T ss_dssp ETTEEEEECTTCEEEECTTSCCEEEECCSSSCEEEEEEEECC
T ss_pred ECCEEEEeCCCCEEEECCCCceEEeEeCCCCCEEEEEEECCC
Confidence 4445677889999999998 9999999766444455555553
No 54
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=83.42 E-value=0.4 Score=42.65 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=31.4
Q ss_pred ccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccc
Q 005393 578 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 578 ~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
.|+ ..+-+|+..-.- ++.+..=++.=..||+++||+|.||+.+|..+
T Consensus 65 ~H~-~~e~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~g~~H~~~~~~~ 111 (126)
T 1vj2_A 65 SHP-WEHEIFVLKGKL-----TVLKEQGEETVEEGFYIFVEPNEIHGFRNDTD 111 (126)
T ss_dssp CCS-SCEEEEEEESEE-----EEECSSCEEEEETTEEEEECTTCCEEEECCSS
T ss_pred eCC-CcEEEEEEEeEE-----EEEECCEEEEECCCCEEEECCCCcEEeEeCCC
Confidence 455 445555543321 13344445666799999999999999999864
No 55
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=83.07 E-value=0.54 Score=42.30 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=26.8
Q ss_pred ceEEEeecCceEEecCCCccccccc-cccccccccccCcc
Q 005393 604 PWTFEQKLGEAVFIPAGCPHQVRNL-KSCTKVAVDFVSPE 642 (698)
Q Consensus 604 pWtf~Q~~GEAVFIPAGcPHQVrNL-~SCIKVAlDFVSPE 642 (698)
+=++.=..||+|+||||.+|..+|. ..+. .+--++|-
T Consensus 76 g~~~~l~~GD~v~ip~g~~H~~~~~~~~~~--~l~v~~P~ 113 (119)
T 3lwc_A 76 GETVTAGPGEIVYMPKGETVTIRSHEEGAL--TAYVTYPH 113 (119)
T ss_dssp TEEEEECTTCEEEECTTCEEEEEEEEEEEE--EEEEEECC
T ss_pred CEEEEECCCCEEEECCCCEEEEEcCCCCeE--EEEEECCC
Confidence 4466778999999999999999997 3333 33345553
No 56
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=82.46 E-value=1.4 Score=38.55 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=35.9
Q ss_pred hCccceEEEeecCceEEecCCCcccccccc--ccccccccccCcccHHHHHHHHHHhhcCCch
Q 005393 600 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK--SCTKVAVDFVSPENVDECLRLTKEFRLLPKN 660 (698)
Q Consensus 600 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~--SCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~ 660 (698)
+-|..=++.=..||+++||+|.+|+++|.. .+.-+++ +++|+-+. .+..+...-|..
T Consensus 67 ~~i~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i-~f~~~~~~---~~~~~~~~~~~~ 125 (128)
T 4i4a_A 67 IRINDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTI-WWDKESTL---NFLTRLEQDHHH 125 (128)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEE-EECHHHHH---HHHHHHHHC---
T ss_pred EEECCEEEEECCCcEEEECCCCcEEeEeCCCCCEEEEEE-EECHHHHH---HHHHhccccccc
Confidence 345556777899999999999999999973 3333343 34555444 455555544433
No 57
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=82.03 E-value=0.62 Score=45.02 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=30.5
Q ss_pred cceEEEeecCceEEecCCCccccccccccccccccccCcc
Q 005393 603 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 642 (698)
Q Consensus 603 epWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 642 (698)
+.+++.=..||+|+||+|.||+.+|.-+--=+.+.+++|.
T Consensus 117 ~~~~~~l~~GD~v~ip~g~~H~~~N~g~~~~~~l~v~~~~ 156 (190)
T 1x82_A 117 DAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYPAD 156 (190)
T ss_dssp CEEEEEECTTCEEEECTTCEEEEEECSSSCEEEEEEEETT
T ss_pred cEEEEEECCCcEEEECCCCeEEEEECCcccEEEEEEECCC
Confidence 4566888999999999999999999865433445555554
No 58
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=81.69 E-value=0.73 Score=40.96 Aligned_cols=61 Identities=25% Similarity=0.321 Sum_probs=39.5
Q ss_pred cccCccCcceecCHHHHHHHHHHhCccc-eEEEeecCceEEecCCCccccccccccccccccccCccc
Q 005393 577 VIHPIHDQCFYLSSEHKKKLKEEFGVEP-WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 643 (698)
Q Consensus 577 v~dPIHDQ~fYL~~~hk~kLkeEyGVep-Wtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 643 (698)
..|+-.++.+|+-.-.- ++-+.. -++.=..||+++||+|.||..+|..+-. ..+-+++|..
T Consensus 59 H~H~~~~E~~~vl~G~~-----~~~~~~~~~~~l~~Gd~~~ip~g~~H~~~~~~~~~-~~l~~~~p~~ 120 (134)
T 2o8q_A 59 HTHTVGFQLFYVLRGWV-----EFEYEDIGAVMLEAGGSAFQPPGVRHRELRHSDDL-EVLEIVSPAG 120 (134)
T ss_dssp EEECCSCEEEEEEESEE-----EEEETTTEEEEEETTCEEECCTTCCEEEEEECTTC-EEEEEESSTT
T ss_pred EECCCCcEEEEEEeCEE-----EEEECCcEEEEecCCCEEEECCCCcEEeEeCCCCe-EEEEEECCCc
Confidence 35665566666543322 133444 5778899999999999999999965422 3344556654
No 59
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=81.63 E-value=0.5 Score=43.04 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=25.4
Q ss_pred EEeecCceEEecCCCccccccccccccccc
Q 005393 607 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 636 (698)
Q Consensus 607 f~Q~~GEAVFIPAGcPHQVrNL~SCIKVAl 636 (698)
+.=..||+|+||+|.||..+|....-|+-+
T Consensus 89 ~~l~~GD~~~ip~g~~h~~~~~~~~rK~yv 118 (123)
T 3bcw_A 89 HAVKAGDAFIMPEGYTGRWEVDRHVKKIYF 118 (123)
T ss_dssp EEEETTCEEEECTTCCCEEEEEEEEEEEEE
T ss_pred EEECCCCEEEECCCCeEEEEECCceeEEEE
Confidence 445789999999999999999988777643
No 60
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=81.33 E-value=0.55 Score=46.38 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=34.5
Q ss_pred cccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCcccccc-cccc
Q 005393 577 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRN-LKSC 631 (698)
Q Consensus 577 v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrN-L~SC 631 (698)
..|| +++-+|+-.-.- ++.|..=++.=..||+++||||+||.++| ...|
T Consensus 169 H~H~-~~e~~~Vl~G~~-----~~~i~g~~~~l~~Gd~i~ip~~~~H~~~~~~~~~ 218 (227)
T 3rns_A 169 HKAP-GDALVTVLDGEG-----KYYVDGKPFIVKKGESAVLPANIPHAVEAETENF 218 (227)
T ss_dssp ECCS-SEEEEEEEEEEE-----EEEETTEEEEEETTEEEEECTTSCEEEECCSSCE
T ss_pred EECC-CcEEEEEEeEEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCCCCE
Confidence 3566 566666543321 24455556777899999999999999999 7654
No 61
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=80.02 E-value=0.29 Score=46.99 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=35.8
Q ss_pred ccccCccCcceecCH--HHHHHHHHHhCccceEEEeecCceEEecCCCcccccc
Q 005393 576 QVIHPIHDQCFYLSS--EHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRN 627 (698)
Q Consensus 576 ~v~dPIHDQ~fYL~~--~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrN 627 (698)
...|+-+++.||+-. ..- ++-|.+=++.=+.||+|+||+|.+|++++
T Consensus 60 ~H~H~~~~E~~yVLe~~G~g-----~v~idge~~~l~~GD~v~IPpg~~H~i~g 108 (157)
T 4h7l_A 60 THYHREHQEIYVVLDHAAHA-----TIELNGQSYPLTKLLAISIPPLVRHRIVG 108 (157)
T ss_dssp CBBCSSCEEEEEEEEECTTC-----EEEETTEEEECCTTEEEEECTTCCEEEES
T ss_pred ceECCCCcEEEEEEecCcEE-----EEEECCEEEEeCCCCEEEECCCCeEeeEC
Confidence 346777888888754 222 24556667888999999999999999986
No 62
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=79.93 E-value=0.69 Score=43.93 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=32.1
Q ss_pred ccCccCcceecCHHHHHHHHHHhCccc----eEEEeecCceEEecCCCccccccc
Q 005393 578 IHPIHDQCFYLSSEHKKKLKEEFGVEP----WTFEQKLGEAVFIPAGCPHQVRNL 628 (698)
Q Consensus 578 ~dPIHDQ~fYL~~~hk~kLkeEyGVep----Wtf~Q~~GEAVFIPAGcPHQVrNL 628 (698)
.||- ++-+|+-.-.- ++.|.. =++.=..||+|+||+|.||+++|.
T Consensus 137 ~h~~-~E~~~Vl~G~~-----~~~~~~~~~~~~~~l~~GD~~~~~~~~~H~~~n~ 185 (198)
T 2bnm_A 137 GHAG-NEFLFVLEGEI-----HMKWGDKENPKEALLPTGASMFVEEHVPHAFTAA 185 (198)
T ss_dssp CCSS-CEEEEEEESCE-----EEEESCTTSCEEEEECTTCEEEECTTCCEEEEES
T ss_pred cCCC-eEEEEEEeeeE-----EEEECCcCCcccEEECCCCEEEeCCCCceEEEec
Confidence 4443 56666643321 244555 677888999999999999999998
No 63
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3
Probab=79.16 E-value=0.66 Score=48.82 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=15.0
Q ss_pred eecCceEEecCCCcccc
Q 005393 609 QKLGEAVFIPAGCPHQV 625 (698)
Q Consensus 609 Q~~GEAVFIPAGcPHQV 625 (698)
=++|||+|||||.||=.
T Consensus 162 l~pGd~~~ipaGt~HA~ 178 (319)
T 1qwr_A 162 IKPGDFYYVPSGTLHAL 178 (319)
T ss_dssp CCTTCEEEECTTCCEEE
T ss_pred cCCCCEEEcCCCCceEe
Confidence 35899999999999974
No 64
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=78.75 E-value=1 Score=42.31 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=38.1
Q ss_pred ccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCC--CccccccccccccccccccCc
Q 005393 578 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAG--CPHQVRNLKSCTKVAVDFVSP 641 (698)
Q Consensus 578 ~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAG--cPHQVrNL~SCIKVAlDFVSP 641 (698)
.|+-.++-+|+..-.- ++-|..=++.=..||+|+||+| .+|+++|.-+---+.+-+.+|
T Consensus 61 ~H~~~eE~~~Vl~G~~-----~~~~~~~~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v~~p 121 (163)
T 3i7d_A 61 YHMEQDEFVMVTEGAL-----VLVDDQGEHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVGTR 121 (163)
T ss_dssp EESSCCEEEEEEESCE-----EEEETTEEEEECTTCEEEECTTCCCCBEEECCSSSCEEEEEEEEC
T ss_pred cCCCCcEEEEEEECEE-----EEEECCEEEEeCCCCEEEECCCCCcceEEEECCCCCEEEEEEECC
Confidence 3444355566543322 1334455677889999999999 999999986644444445544
No 65
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=78.74 E-value=0.78 Score=46.98 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=38.8
Q ss_pred hCccceEEEeecCceEEecCCCccccccccccccccccccCcccHHHHHHH
Q 005393 600 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRL 650 (698)
Q Consensus 600 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rL 650 (698)
+.|..-++.=..||.++||+|+||+.+|... --..+-+++|....+-++-
T Consensus 252 ~~i~~~~~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~~~~~~~~~~ 301 (337)
T 1y3t_A 252 MWTDGQEIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVPGLFEPFFRT 301 (337)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECSS-SEEEEEEEESSTTTHHHHH
T ss_pred EEECCEEEEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcCccHHHHHHH
Confidence 3455567888999999999999999999876 3445566788888765544
No 66
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3
Probab=78.42 E-value=0.72 Score=48.21 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.3
Q ss_pred EeecCceEEecCCCcccc
Q 005393 608 EQKLGEAVFIPAGCPHQV 625 (698)
Q Consensus 608 ~Q~~GEAVFIPAGcPHQV 625 (698)
.=++|||+|||||.||=.
T Consensus 161 ~l~pGd~~~ipaGt~HA~ 178 (300)
T 1zx5_A 161 ETTPYDTFVIRPGIPHAG 178 (300)
T ss_dssp ECCTTCEEEECTTCCEEE
T ss_pred ECCCCCEEEcCCCCceEc
Confidence 337899999999999964
No 67
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=78.30 E-value=1.2 Score=43.13 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=29.3
Q ss_pred eEEEeecCceEEecCCCccccccccccccccccccCccc
Q 005393 605 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 643 (698)
Q Consensus 605 Wtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 643 (698)
.++.=..||+++||+|.+|..+|.-+---+.+-+.++.+
T Consensus 119 ~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~~ 157 (201)
T 1fi2_A 119 YSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQN 157 (201)
T ss_dssp EEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESSSC
T ss_pred EEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCC
Confidence 366778899999999999999998654444455555554
No 68
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=77.27 E-value=1.2 Score=41.07 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=25.5
Q ss_pred EEeecCceEEecCCCccccccccccccccccccCc
Q 005393 607 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 641 (698)
Q Consensus 607 f~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSP 641 (698)
+.=..||+++||+|.||+.+|..+.--+.+-++.|
T Consensus 89 ~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~~ 123 (147)
T 2f4p_A 89 RILKKGDVVEIPPNVVHWHGAAPDEELVHIGISTQ 123 (147)
T ss_dssp EEEETTCEEEECTTCCEEEEEBTTBCEEEEEEECC
T ss_pred EEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcc
Confidence 56679999999999999999986533333334443
No 69
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=77.04 E-value=0.86 Score=41.02 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=25.5
Q ss_pred hCccceEEEeecCceEEecCCCccccccccc
Q 005393 600 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 600 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
+.|..-++.=..||+++||+|.||+.+|..+
T Consensus 91 ~~i~~~~~~l~~Gd~i~i~~~~~H~~~n~~~ 121 (133)
T 1o4t_A 91 FHDNGKDVPIKAGDVCFTDSGESHSIENTGN 121 (133)
T ss_dssp EEETTEEEEEETTEEEEECTTCEEEEECCSS
T ss_pred EEECCEEEEeCCCcEEEECCCCcEEeEECCC
Confidence 3455567777899999999999999999753
No 70
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=75.62 E-value=0.93 Score=44.72 Aligned_cols=56 Identities=11% Similarity=0.063 Sum_probs=40.1
Q ss_pred CccccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccccccc
Q 005393 575 EQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 636 (698)
Q Consensus 575 ~~v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAl 636 (698)
....|| +++.+|+-.--- ++.|.+=+..=..||.++||||.||-++|+..|+=+..
T Consensus 51 ~~h~h~-~~~~~~Vl~G~~-----~~~i~~~~~~l~~Gd~~~~p~~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 51 TAEAML-GNRYYYCFNGNG-----EIFIENNKKTISNGDFLEITANHNYSIEARDNLKLIEI 106 (227)
T ss_dssp EECSCS-SCEEEEEEESEE-----EEEESSCEEEEETTEEEEECSSCCEEEEESSSEEEEEE
T ss_pred CccccC-CCEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCCcEEEEE
Confidence 345677 778777643221 23455556677889999999999999999988765544
No 71
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=75.08 E-value=0.89 Score=45.68 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=32.7
Q ss_pred ccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccc
Q 005393 578 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 578 ~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
.|+-.++-+|+-.-.- ++.|..=++.=..||+|+||||+||+.+|.-+
T Consensus 196 ~H~~~~E~~~Vl~G~~-----~~~i~~~~~~l~~GD~i~~~~~~~H~~~n~g~ 243 (261)
T 1rc6_A 196 ETHVQEHGAYILSGQG-----VYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGR 243 (261)
T ss_dssp EEESSCEEEEEEESEE-----EEESSSCEEEEETTCEEEECSSEEEEEEEC--
T ss_pred cCCCceEEEEEEEeEE-----EEEECCEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 3444455666533221 24556667788999999999999999999854
No 72
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=73.88 E-value=1.1 Score=42.81 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.1
Q ss_pred ceEEEeecCceEEecCCCccccccccc
Q 005393 604 PWTFEQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 604 pWtf~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
.-++.=+.||+++||+|.||..+|.-+
T Consensus 82 ~~~~~l~~GDv~~~P~g~~H~~~N~g~ 108 (178)
T 1dgw_A 82 RDTYKLDQGDAIKIQAGTPFYLINPDN 108 (178)
T ss_dssp EEEEEEETTEEEEECTTCCEEEEECCS
T ss_pred cEEEEECCCCEEEECCCCeEEEEeCCC
Confidence 346677889999999999999999854
No 73
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=73.86 E-value=1.5 Score=40.25 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=28.3
Q ss_pred ccceEEEeecCceEEecCCCccccccccccccccc
Q 005393 602 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 636 (698)
Q Consensus 602 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAl 636 (698)
+.+=++.=+.||+++||+|.||..+|...+.++.+
T Consensus 90 ~~g~~~~l~~GD~i~~p~g~~h~~~~~~~~~~l~v 124 (133)
T 2pyt_A 90 HEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFLYV 124 (133)
T ss_dssp ETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEE
T ss_pred ECCEEEEECCCcEEEECCCCEEEEEeCCCEEEEEE
Confidence 34556677899999999999999999877766554
No 74
>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*
Probab=73.67 E-value=1.1 Score=48.52 Aligned_cols=15 Identities=47% Similarity=0.738 Sum_probs=14.3
Q ss_pred ecCceEEecCCCccc
Q 005393 610 KLGEAVFIPAGCPHQ 624 (698)
Q Consensus 610 ~~GEAVFIPAGcPHQ 624 (698)
++|||+|||||.||=
T Consensus 245 ~pGd~~fipAG~~HA 259 (394)
T 2wfp_A 245 NPGEAMFLFAETPHA 259 (394)
T ss_dssp CTTCEEEECTTCCEE
T ss_pred CCCCEEEcCCCCceE
Confidence 789999999999996
No 75
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=73.54 E-value=1 Score=46.90 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=36.3
Q ss_pred EEEeecCceEEecCCCccccccccccccccccccCcccHHHHHHHHHHhhcCCchh
Q 005393 606 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNH 661 (698)
Q Consensus 606 tf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H 661 (698)
++.=..||+++||+|+||+.+|.-+---+.+-+++|.+... +.++.=++.+|.+-
T Consensus 279 ~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~v 333 (361)
T 2vqa_A 279 VSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQS-IDLSTWLASNPSSV 333 (361)
T ss_dssp EEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESSSSCCC-EEHHHHHHTSCHHH
T ss_pred EEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECCCCcce-eeHHHHhhhCCHHH
Confidence 56667899999999999999998653224455555544222 23445566777654
No 76
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=72.34 E-value=1.3 Score=44.95 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=26.2
Q ss_pred hCccceEEEeecCceEEecCCCccccccccc
Q 005393 600 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 600 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
+.|..-++.=..||+|+||||+||+.+|.-.
T Consensus 216 ~~i~~~~~~l~~GD~i~i~~~~~H~~~n~~~ 246 (274)
T 1sef_A 216 YNLDNEWYPVEKGDYIFMSAYVPQAAYAVGR 246 (274)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEEECS
T ss_pred EEECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 4555667788999999999999999999755
No 77
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=72.11 E-value=1.3 Score=43.97 Aligned_cols=48 Identities=23% Similarity=0.147 Sum_probs=34.2
Q ss_pred cccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEE-ecCCCccccccccc
Q 005393 577 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVF-IPAGCPHQVRNLKS 630 (698)
Q Consensus 577 v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVF-IPAGcPHQVrNL~S 630 (698)
..|| +.|-+|+-.--- ++-|..=++.=..||+|| ||+|.||+++|..+
T Consensus 50 H~H~-~~e~~~Vl~G~~-----~~~~~~~~~~l~~Gd~i~~ip~~~~H~~~n~~~ 98 (243)
T 3h7j_A 50 HQHK-EVQIGMVVSGEL-----MMTVGDVTRKMTALESAYIAPPHVPHGARNDTD 98 (243)
T ss_dssp ECCS-SEEEEEEEESEE-----EEEETTEEEEEETTTCEEEECTTCCEEEEECSS
T ss_pred EECC-CcEEEEEEEeEE-----EEEECCEEEEECCCCEEEEcCCCCcEeeEeCCC
Confidence 3566 667676643322 233445566778999997 99999999999877
No 78
>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3
Probab=71.71 E-value=1.3 Score=48.72 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=14.7
Q ss_pred eecCceEEecCCCccc
Q 005393 609 QKLGEAVFIPAGCPHQ 624 (698)
Q Consensus 609 Q~~GEAVFIPAGcPHQ 624 (698)
=++|||+|||||.||=
T Consensus 270 L~pGea~flpAg~~HA 285 (440)
T 1pmi_A 270 LNKGEAMFLQAKDPHA 285 (440)
T ss_dssp ECTTCEEEECTTCCEE
T ss_pred cCCCCEEecCCCCccc
Confidence 5789999999999996
No 79
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=71.67 E-value=1.5 Score=44.94 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=34.8
Q ss_pred hCccceEEEeecCceEEecCCCccccccccccccccccccCcccHHHHH
Q 005393 600 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECL 648 (698)
Q Consensus 600 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~ 648 (698)
+.|..-++.=..||.|+||+|.||..+|...- -..+.+++|....+-+
T Consensus 80 ~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~-~~~~~~~~p~~~~~~~ 127 (337)
T 1y3t_A 80 LTLDGERYLLISGDYANIPAGTPHSYRMQSHR-TRLVSYTMKGNVAHLY 127 (337)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECSTT-EEEEEEEETTSSTHHH
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEECCCC-eEEEEEECCCCHHHHH
Confidence 34456677788999999999999999998762 2344556666665544
No 80
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=70.97 E-value=1.4 Score=45.58 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=22.9
Q ss_pred hCccceEEEeecCceEEecCCCccccccc
Q 005393 600 FGVEPWTFEQKLGEAVFIPAGCPHQVRNL 628 (698)
Q Consensus 600 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL 628 (698)
|.+..=.+.=+.||++|||+||||+..|.
T Consensus 220 y~l~~~~~~V~~GD~i~~~~~~~h~~~n~ 248 (266)
T 4e2q_A 220 YRLGDNWYPVQAGDVIWMAPFVPQWYAAL 248 (266)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred EEECCEEEEecCCCEEEECCCCcEEEEeC
Confidence 34444455667899999999999999986
No 81
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=70.94 E-value=2.1 Score=41.34 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=24.8
Q ss_pred ccceEEEeecCceEEecCCCccccccccc
Q 005393 602 VEPWTFEQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 602 VepWtf~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
|..=+|.=..||+++||||.||..+|.-+
T Consensus 125 l~g~~~~L~~Gds~~iP~g~~H~~~N~~d 153 (166)
T 2vpv_A 125 VCKNKFLSVKGSTFQIPAFNEYAIANRGN 153 (166)
T ss_dssp ETTEEEEEETTCEEEECTTCEEEEEECSS
T ss_pred ECCEEEEEcCCCEEEECCCCCEEEEECCC
Confidence 44557777899999999999999999765
No 82
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=70.16 E-value=1.4 Score=46.52 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=49.9
Q ss_pred cccCccCcceecCHHHHHHHHHHhCccc-----eEEEeecCceEEecCCCccccccccccccccccccCcccHHHHHHHH
Q 005393 577 VIHPIHDQCFYLSSEHKKKLKEEFGVEP-----WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLT 651 (698)
Q Consensus 577 v~dPIHDQ~fYL~~~hk~kLkeEyGVep-----Wtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLt 651 (698)
..|+-.++.||+-.-.- ++-|.. -++.=..||.|+||+|.||..+|.-.-. ..+-.++|....+-++-.
T Consensus 66 H~H~~~~E~~~Vl~G~~-----~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~~l~v~~p~~~~~~f~~l 139 (350)
T 1juh_A 66 HIHQKHYENFYCNKGSF-----QLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDT-EMTGVIVPGGFEDLFYYL 139 (350)
T ss_dssp EECSSCEEEEEEEESEE-----EEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTE-EEEEEEESSCTTHHHHHH
T ss_pred ccCCCceEEEEEEEEEE-----EEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCCCC-EEEEEEcCccHHHHHHHh
Confidence 35666667777643321 244555 7788899999999999999999986544 667788888876665543
Q ss_pred H
Q 005393 652 K 652 (698)
Q Consensus 652 e 652 (698)
.
T Consensus 140 ~ 140 (350)
T 1juh_A 140 G 140 (350)
T ss_dssp S
T ss_pred c
Confidence 3
No 83
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Probab=70.03 E-value=2.4 Score=47.46 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=34.1
Q ss_pred hCccceEEEeecCceEEecCCCccccccccc--cccccccccCc
Q 005393 600 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS--CTKVAVDFVSP 641 (698)
Q Consensus 600 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~S--CIKVAlDFVSP 641 (698)
.+-..+.++-.+||..|||.|.+|||+++-. ++.++.-+-.+
T Consensus 223 ~~~p~~e~~L~pGDvLYiP~g~~H~~~s~~~~~SlhlTi~~~~~ 266 (489)
T 4diq_A 223 LGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQR 266 (489)
T ss_dssp CCCCSEEEEECTTCEEEECTTCEEEEEBCSSCCEEEEEEEECTT
T ss_pred ccCcceEEEECCCCEEEECCCCceEEEecCCCceEEEeecccCc
Confidence 3567789999999999999999999999954 56666665543
No 84
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}
Probab=69.44 E-value=2.4 Score=46.68 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=27.8
Q ss_pred HhCccceEEEeecCceEEecCCCcccccccc
Q 005393 599 EFGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 629 (698)
Q Consensus 599 EyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~ 629 (698)
++|-..+.++=.+||+.|||+|.+|+|+++.
T Consensus 193 ~~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~ 223 (442)
T 2xdv_A 193 RIGRPVHEFMLKPGDLLYFPRGTIHQADTPA 223 (442)
T ss_dssp TSCSCSEEEEECTTCEEEECTTCEEEEECCS
T ss_pred hcCCcceEEEECCCcEEEECCCceEEEEecC
Confidence 3566778999999999999999999999986
No 85
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=68.11 E-value=1.6 Score=45.97 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=23.1
Q ss_pred ceEEEeecCceEEecCCCccccccccc
Q 005393 604 PWTFEQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 604 pWtf~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
.-++.=..||+++||+|.||+++|.-+
T Consensus 300 ~~~~~l~~GD~~~ip~~~~H~~~n~~~ 326 (385)
T 1j58_A 300 ARTFNYQAGDVGYVPFAMGHYVENIGD 326 (385)
T ss_dssp EEEEEEESSCEEEECTTCBEEEEECSS
T ss_pred EEEEEEcCCCEEEECCCCeEEEEECCC
Confidence 346677799999999999999999854
No 86
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=68.02 E-value=2.3 Score=45.21 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=30.2
Q ss_pred ccceEEEeecCceEEecCCCccccccccccccccccccCc
Q 005393 602 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 641 (698)
Q Consensus 602 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSP 641 (698)
|.+-++.=..||+|+||+|.+|+.+|.-+---+-++|..|
T Consensus 136 v~g~~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v~d~ 175 (354)
T 2d40_A 136 VDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDL 175 (354)
T ss_dssp ETTEEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEECH
T ss_pred ECCEEEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEEECc
Confidence 4556788889999999999999999985432234566554
No 87
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=66.83 E-value=1.9 Score=44.16 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=25.5
Q ss_pred hCccceEEEeecCceEEecCCCccccccccc
Q 005393 600 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 600 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
+.|..=++.=..||+++||||.||+++|.-+
T Consensus 103 v~v~g~~~~L~~GD~i~ip~~~~H~~~N~g~ 133 (278)
T 1sq4_A 103 LTLQGQVHAMQPGGYAFIPPGADYKVRNTTG 133 (278)
T ss_dssp EEESSCEEEECTTEEEEECTTCCEEEECCSS
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEECCC
Confidence 3445557788899999999999999999843
No 88
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=65.22 E-value=2.9 Score=45.10 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=24.8
Q ss_pred ccceEEEeecCceEEecCCCcccccccc
Q 005393 602 VEPWTFEQKLGEAVFIPAGCPHQVRNLK 629 (698)
Q Consensus 602 VepWtf~Q~~GEAVFIPAGcPHQVrNL~ 629 (698)
|.+=++.=..||+|+||+|+.|++.|--
T Consensus 139 vdG~~~~~~~GD~v~iP~g~~H~~~N~g 166 (368)
T 3nw4_A 139 VNGDPVRMSRGDLLLTPGWCFHGHMNDT 166 (368)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEECS
T ss_pred ECCEEEEEeCCCEEEECCCCcEEeEeCC
Confidence 5666888999999999999999999953
No 89
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=64.97 E-value=2.3 Score=42.58 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=25.9
Q ss_pred HhCccceEEEeecCceEEecCCCccccccccc
Q 005393 599 EFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 599 EyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
+|-+..=++.=..||.+|++||+||+.+|.-.
T Consensus 198 ~~~~~~~~~~l~~GD~~~~~~~~pH~~~n~g~ 229 (246)
T 1sfn_A 198 LYKLEENYYPVTAGDIIWMGAHCPQWYGALGR 229 (246)
T ss_dssp EEEETTEEEEEETTCEEEECTTCCEEEEEESS
T ss_pred EEEECCEEEEcCCCCEEEECCCCCEEEEcCCC
Confidence 35566666677899999999999999999643
No 90
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=64.92 E-value=2.9 Score=45.49 Aligned_cols=29 Identities=21% Similarity=0.094 Sum_probs=25.8
Q ss_pred CccceEEEeecCceEEecCCCcccccccc
Q 005393 601 GVEPWTFEQKLGEAVFIPAGCPHQVRNLK 629 (698)
Q Consensus 601 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~ 629 (698)
-|.+-++.-..||+||||+|.+||+.|.-
T Consensus 328 ~V~ge~~~~~~GD~~~iP~g~~H~~~N~g 356 (394)
T 3bu7_A 328 IVGGKRFDWSEHDIFCVPAWTWHEHCNTQ 356 (394)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEEECC
T ss_pred EECCEEEEEeCCCEEEECCCCeEEeEeCC
Confidence 35678899999999999999999999964
No 91
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=61.66 E-value=5 Score=38.99 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=26.2
Q ss_pred EEEeecCceEEecCCCccccccccccccccccccCcc
Q 005393 606 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 642 (698)
Q Consensus 606 tf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 642 (698)
++.=..||.|+||||.||...+-..--=+|+.|-+++
T Consensus 123 ~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~~~ 159 (179)
T 1zrr_A 123 QVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNP 159 (179)
T ss_dssp EEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCG
T ss_pred EEEECCCCEEEECCCCeEeeecCCCceEEEEEeccCC
Confidence 4556899999999999999988665322344444443
No 92
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=61.59 E-value=4.5 Score=34.51 Aligned_cols=39 Identities=28% Similarity=0.869 Sum_probs=28.5
Q ss_pred ccccCCCCce-ecCCCccccc----cccccCCCCCcccchhchH
Q 005393 85 ETLCGNDERV-YCNHCATSII----DLHRSCPKCSYELCLTCCK 123 (698)
Q Consensus 85 ~a~~~~DERv-yCD~C~TSI~----D~HRsC~~CsydLCL~CC~ 123 (698)
++.+..+.++ ||-+|.+.|. .....|++|++.+|..|-.
T Consensus 16 e~~v~~~~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 16 EGVLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp CSCCCSCCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred HHHHhcCCCEeECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 3444445554 6999999764 3456899999999999964
No 93
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=60.69 E-value=2.9 Score=41.85 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=25.1
Q ss_pred CccceEEEeecCceEEecCCCcccccccccc
Q 005393 601 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSC 631 (698)
Q Consensus 601 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~SC 631 (698)
.|..=++.=..||+++||||.||+++|...+
T Consensus 82 ~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~ 112 (246)
T 1sfn_A 82 AVGGETRTLREYDYVYLPAGEKHMLTAKTDA 112 (246)
T ss_dssp ECSSCEEEECTTEEEEECTTCCCEEEEEEEE
T ss_pred EECCEEEEECCCCEEEECCCCCEEEEeCCCE
Confidence 3445566778899999999999999998544
No 94
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=59.10 E-value=2.5 Score=44.06 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.2
Q ss_pred eEEEeecCceEEecCCCcccccccc
Q 005393 605 WTFEQKLGEAVFIPAGCPHQVRNLK 629 (698)
Q Consensus 605 Wtf~Q~~GEAVFIPAGcPHQVrNL~ 629 (698)
-++.=..||+++||+|.||..+|.-
T Consensus 96 ~~~~l~~GD~~~ip~g~~H~~~n~~ 120 (361)
T 2vqa_A 96 EIADVDKGGLWYFPRGWGHSIEGIG 120 (361)
T ss_dssp EEEEEETTEEEEECTTCEEEEEECS
T ss_pred EEEEEcCCCEEEECCCCeEEEEeCC
Confidence 4567778999999999999999986
No 95
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=58.88 E-value=3.2 Score=41.86 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=30.9
Q ss_pred ccCccCcceecCHHHHHHHHHHhCcc-ceEEEeecCceEEecCCCcccccccc
Q 005393 578 IHPIHDQCFYLSSEHKKKLKEEFGVE-PWTFEQKLGEAVFIPAGCPHQVRNLK 629 (698)
Q Consensus 578 ~dPIHDQ~fYL~~~hk~kLkeEyGVe-pWtf~Q~~GEAVFIPAGcPHQVrNL~ 629 (698)
.|| ++|.+|+=... -||.|+ .=++.=..||.||||+|.||.+|+..
T Consensus 149 sHp-~EEiy~VLsG~-----~e~~v~~g~~~~l~pGd~v~ipsgv~Ha~rt~d 195 (217)
T 4b29_A 149 EHL-PEELYSVVSGR-----ALFHLRNAPDLMLEPGQTRFHPANAPHAMTTLT 195 (217)
T ss_dssp ECS-SEEEEEEEEEC-----EEEEETTSCCEEECTTCEEEECTTCCEEEECCS
T ss_pred CCC-CceEEEEEeCC-----EEEEECCCCEEecCCCCEEEcCCCCceeEEECC
Confidence 666 46655542111 135555 45566789999999999999999743
No 96
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=57.98 E-value=4 Score=39.48 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=26.1
Q ss_pred EEEeecCceEEecCCCccccccccccccccccccCc
Q 005393 606 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 641 (698)
Q Consensus 606 tf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSP 641 (698)
++.=+.||++ ||+|.||+.+|.-+---..+-.++|
T Consensus 119 ~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V~~P 153 (172)
T 3es1_A 119 KRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFILIE 153 (172)
T ss_dssp EEEECTTCEE-EECSCCBEEECCSSSCEEEEEEEEE
T ss_pred EEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEEEcC
Confidence 4566899999 9999999999986654444444444
No 97
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=57.09 E-value=4 Score=45.60 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=24.2
Q ss_pred ecCceEEecCCCccccccccccccccccccC
Q 005393 610 KLGEAVFIPAGCPHQVRNLKSCTKVAVDFVS 640 (698)
Q Consensus 610 ~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVS 640 (698)
+.||+|+||||.||-..|.-+--=|++-++.
T Consensus 118 ~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d 148 (493)
T 2d5f_A 118 NEGDVLVIPPGVPYWTYNTGDEPVVAISLLD 148 (493)
T ss_dssp ETTEEEEECTTCCEEEEECSSSCEEEEEEEC
T ss_pred cCCCEEEECCCCcEEEEeCCCCCEEEEEEec
Confidence 6799999999999999999774444444444
No 98
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=56.93 E-value=5.8 Score=39.09 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=27.5
Q ss_pred EEEeecCceEEecCCCccccccccccccccccccCcc
Q 005393 606 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 642 (698)
Q Consensus 606 tf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 642 (698)
++.=..||.|+||||.||...+-.+--=+|+.|.+++
T Consensus 128 ~i~v~~GDlIiIPaG~~H~f~~~~~~~~~airlF~~~ 164 (191)
T 1vr3_A 128 RISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGE 164 (191)
T ss_dssp EEEEETTEEEEECTTCCEEEEECTTCCEEEEEEESSS
T ss_pred EEEECCCCEEEECcCCcCCcccCCCCCEEEEEEECCC
Confidence 6777899999999999999887655333455555554
No 99
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=56.26 E-value=3.6 Score=42.46 Aligned_cols=24 Identities=8% Similarity=0.295 Sum_probs=20.7
Q ss_pred EEEeecCceEEecCCCcccccccc
Q 005393 606 TFEQKLGEAVFIPAGCPHQVRNLK 629 (698)
Q Consensus 606 tf~Q~~GEAVFIPAGcPHQVrNL~ 629 (698)
++.=..||++++|||.+||++|-.
T Consensus 110 ~~~L~~Gds~y~p~~~~H~~~N~~ 133 (266)
T 4e2q_A 110 SKKLTVDSYAYLPPNFHHSLDCVE 133 (266)
T ss_dssp CEEECTTEEEEECTTCCCEEEESS
T ss_pred EEEEcCCCEEEECCCCCEEEEeCC
Confidence 455678999999999999999954
No 100
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=55.03 E-value=4.2 Score=41.13 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=25.0
Q ss_pred hCccceEEEeecCceEEecCCCccccccccc
Q 005393 600 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 600 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
..|..=++.=..||++++|||.||+.+|.-+
T Consensus 97 ~~~~~~~~~L~~GD~~~~~~~~~H~~~N~~~ 127 (274)
T 1sef_A 97 VSDGQETHELEAGGYAYFTPEMKMYLANAQE 127 (274)
T ss_dssp EECSSCEEEEETTEEEEECTTSCCEEEESSS
T ss_pred EEECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 3344556777899999999999999999854
No 101
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=55.02 E-value=3.8 Score=41.95 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=25.5
Q ss_pred hCccceEEEeecCceEEecCCCccccccccc
Q 005393 600 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 600 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
|-+..=++.=..||.+|+|+||||+.+|.-.
T Consensus 225 ~~~~~~~~~v~~GD~~~~~~~~~h~~~n~g~ 255 (278)
T 1sq4_A 225 YRLNQDWVEVEAGDFMWLRAFCPQACYSGGP 255 (278)
T ss_dssp EEETTEEEEEETTCEEEEEESCCEEEECCSS
T ss_pred EEECCEEEEeCCCCEEEECCCCCEEEEcCCC
Confidence 5555666777899999999999999999644
No 102
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=54.78 E-value=5.5 Score=39.84 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=24.7
Q ss_pred CccceEEEeecCceEEecCCCccccccccc
Q 005393 601 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 601 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
.|..=++.=..||++++|||.||+.+|.-+
T Consensus 95 ~~~~~~~~L~~Gd~~~~~~~~~H~~~N~~~ 124 (261)
T 1rc6_A 95 KAEGKTFALSEGGYLYCPPGSLMTFVNAQA 124 (261)
T ss_dssp EETTEEEEEETTEEEEECTTCCCEEEECSS
T ss_pred EECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 344556777899999999999999999844
No 103
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=54.25 E-value=4.1 Score=45.06 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=25.4
Q ss_pred eecCceEEecCCCccccccccccccccccccCcc
Q 005393 609 QKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 642 (698)
Q Consensus 609 Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 642 (698)
=+.||+++||||.||-..|.-+--=+++-++++-
T Consensus 131 l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~ 164 (459)
T 2e9q_A 131 FREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTR 164 (459)
T ss_dssp EETTEEEEECTTCCEEEEECSSSCEEEEEEEESS
T ss_pred ecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCC
Confidence 3579999999999999999986544555444433
No 104
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=51.92 E-value=6.8 Score=41.53 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=24.4
Q ss_pred ccceEEEeecCceEEecCCCccccccc
Q 005393 602 VEPWTFEQKLGEAVFIPAGCPHQVRNL 628 (698)
Q Consensus 602 VepWtf~Q~~GEAVFIPAGcPHQVrNL 628 (698)
|.+-+|.=..||+++||+|++||++|-
T Consensus 303 v~~~~~~~~~GD~~~vP~~~~H~~~n~ 329 (354)
T 2d40_A 303 IGNETFSFSAKDIFVVPTWHGVSFQTT 329 (354)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred ECCEEEEEcCCCEEEECCCCeEEEEeC
Confidence 467888999999999999999999994
No 105
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=49.98 E-value=5.8 Score=44.58 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=26.0
Q ss_pred ecCceEEecCCCccccccccccccccccccCccc
Q 005393 610 KLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 643 (698)
Q Consensus 610 ~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 643 (698)
+.||+|.||||.||-..|.-+--=||+-++.+-|
T Consensus 131 ~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n 164 (510)
T 3c3v_A 131 NEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNN 164 (510)
T ss_dssp CTTEEEEECTTCEEEEEECSSSCEEEEEEECTTB
T ss_pred cCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCC
Confidence 5699999999999999999865555544444444
No 106
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=49.89 E-value=7.3 Score=42.31 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=24.5
Q ss_pred CccceEEEeecCceEEecCCCcccccc
Q 005393 601 GVEPWTFEQKLGEAVFIPAGCPHQVRN 627 (698)
Q Consensus 601 GVepWtf~Q~~GEAVFIPAGcPHQVrN 627 (698)
-|.+=++.-..||+|+||+|..|+.+|
T Consensus 158 ~v~G~~~~~~~GD~i~~P~g~~H~~~N 184 (394)
T 3bu7_A 158 IVDGHKVELGANDFVLTPNGTWHEHGI 184 (394)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEEE
T ss_pred EECCEEEEEcCCCEEEECcCCCEEEEc
Confidence 456668999999999999999999999
No 107
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=49.14 E-value=8.7 Score=34.31 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=24.0
Q ss_pred hCccceEEEeecCceEEecCCCcccccccc
Q 005393 600 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 629 (698)
Q Consensus 600 yGVepWtf~Q~~GEAVFIPAGcPHQVrNL~ 629 (698)
+-|..=++.=..||++|||+|.+|+.++-.
T Consensus 51 ~~i~~~~~~l~~Gd~~~i~p~~~H~~~~~~ 80 (164)
T 2arc_A 51 VKNQGREFVCRPGDILLFPPGEIHHYGRHP 80 (164)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECT
T ss_pred EEECCEEEEecCCeEEEEcCCCCEEEEeCC
Confidence 334555667789999999999999998764
No 108
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=47.71 E-value=6.6 Score=43.65 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=22.8
Q ss_pred EEeecCceEEecCCCcccccccccccccc
Q 005393 607 FEQKLGEAVFIPAGCPHQVRNLKSCTKVA 635 (698)
Q Consensus 607 f~Q~~GEAVFIPAGcPHQVrNL~SCIKVA 635 (698)
..=+.||+|+||||.||-..|.-+--=++
T Consensus 115 ~~l~~GDvi~iPaG~~h~~~N~G~~~l~~ 143 (476)
T 1fxz_A 115 YNFREGDLIAVPTGVAWWMYNNEDTPVVA 143 (476)
T ss_dssp EEECTTEEEEECTTCEEEEEECSSSCEEE
T ss_pred EEEeCCCEEEECCCCcEEEEeCCCCCEEE
Confidence 34467999999999999999997543344
No 109
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=46.55 E-value=7.7 Score=37.80 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=31.8
Q ss_pred ceE-EEeecCceEEecCCCccccccccccccccccccCcccHHH
Q 005393 604 PWT-FEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDE 646 (698)
Q Consensus 604 pWt-f~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~e 646 (698)
+|+ ++..+||.|.||.|.+|...|.... |.++=||+-|-++
T Consensus 117 a~~~i~L~pGesvtIppg~~H~f~ageeg--vli~EvSt~~dDe 158 (175)
T 2y0o_A 117 VWHEIELEPGGQYTIPPNTKHWFQAGEEG--AVVTEMSSTSTDK 158 (175)
T ss_dssp CCEEEEECTTCEEEECTTCCEEEEEEEEE--EEEEEEEECCCGG
T ss_pred CCcEEEECCCCEEEECCCCcEEEEeCCCC--EEEEEEeCCCCCC
Confidence 344 5899999999999999999996555 6667777765444
No 110
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=46.42 E-value=8.2 Score=36.88 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=28.9
Q ss_pred ecCceEEecCCCcccccccc----cccccc-----ccccCcc
Q 005393 610 KLGEAVFIPAGCPHQVRNLK----SCTKVA-----VDFVSPE 642 (698)
Q Consensus 610 ~~GEAVFIPAGcPHQVrNL~----SCIKVA-----lDFVSPE 642 (698)
..||.+++|+|-+|++.+.. -||-++ +-|+.|.
T Consensus 85 ~aGd~~~~P~g~~H~~~a~~~~~~gci~l~v~~GpL~~~~~~ 126 (165)
T 3cjx_A 85 TAGCYLYEPGGSIHQFNTPRDNEGQTEVIFMLSGCNVNFTQD 126 (165)
T ss_dssp ETTEEEEECTTCEECEECCTTCSSCEEEEEEEESCEEEECTT
T ss_pred CCCeEEEeCCCCceeeEeCCCCCCCcEEEEEEeccceecCCC
Confidence 68999999999999999998 897777 6777775
No 111
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=43.80 E-value=6.6 Score=36.20 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=36.6
Q ss_pred ccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCC
Q 005393 578 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 621 (698)
Q Consensus 578 ~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGc 621 (698)
.=|.|...-.+.+.+-+.|+++|||.-|.| +-||-|.|=||=
T Consensus 14 ~Ap~h~rrk~msa~LskeLr~ky~vr~~~I--kkGD~V~Vi~G~ 55 (120)
T 1vq8_T 14 RAPLHERHKQVRATLSADLREEYGQRNVRV--NAGDTVEVLRGD 55 (120)
T ss_dssp TCCGGGSGGGGEEEECHHHHHHHTCSEEEC--CTTCEEEECSST
T ss_pred cCCcchhhheeeCcCCHHHHHhhccccccc--cCCCEEEEEecC
Confidence 358899999999988889999999999876 679999999984
No 112
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=43.59 E-value=7.7 Score=42.69 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.6
Q ss_pred eEEEeecCceEEecCCCcccccccc
Q 005393 605 WTFEQKLGEAVFIPAGCPHQVRNLK 629 (698)
Q Consensus 605 Wtf~Q~~GEAVFIPAGcPHQVrNL~ 629 (698)
.++.=+.||.++||+|.+|.+.|.-
T Consensus 128 ~~~~l~~GDv~~~P~G~~H~~~N~g 152 (445)
T 2cav_A 128 DTYKLDQGDAIKIQAGTPFYLINPD 152 (445)
T ss_dssp EEEEEETTEEEEECTTCCEEEEECC
T ss_pred EEEEecCCCEEEECCCCcEEEEECC
Confidence 4677788999999999999999995
No 113
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=40.58 E-value=9.8 Score=32.90 Aligned_cols=31 Identities=19% Similarity=0.564 Sum_probs=28.5
Q ss_pred ceecCCCccccccccccCCCCCcccchhchH
Q 005393 93 RVYCNHCATSIIDLHRSCPKCSYELCLTCCK 123 (698)
Q Consensus 93 RvyCD~C~TSI~D~HRsC~~CsydLCL~CC~ 123 (698)
...||.|...+..+.-.|..|.|+|=+.|-.
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~ 77 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDECDFDLHAKCAL 77 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTTCCCCCHHHHH
T ss_pred CeEeCCCCCcCCCcEEEcCCCCCeEcHHhcC
Confidence 4679999999999999999999999999975
No 114
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=40.40 E-value=11 Score=41.88 Aligned_cols=85 Identities=11% Similarity=0.035 Sum_probs=47.0
Q ss_pred CccccCccCcceecCHHHHH-HHHHHhCccceEEEeecCceEEecCCCccccccccccccccccccCcccHHHHHHH---
Q 005393 575 EQVIHPIHDQCFYLSSEHKK-KLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRL--- 650 (698)
Q Consensus 575 ~~v~dPIHDQ~fYL~~~hk~-kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rL--- 650 (698)
....||-.++.+|+..-.-+ .+-.+-|-+-.+..=..||.++||+|.||.+.|...-+.+..=++||.. ..- .|
T Consensus 352 ~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP~G~~H~~~ng~~~l~~l~f~~s~~p-~~~-~laG~ 429 (476)
T 1fxz_A 352 VPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTP-MIG-TLAGA 429 (476)
T ss_dssp EEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSTTEEEEEEESSSSC-CEE-ESSST
T ss_pred cceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEECCCCeEEEEeCCCCEEEEEEECCCCC-cee-Eccch
Confidence 34578877777776543211 1111122222333357899999999999999995444444443445522 111 22
Q ss_pred HHHhhcCCchh
Q 005393 651 TKEFRLLPKNH 661 (698)
Q Consensus 651 teEfR~Lp~~H 661 (698)
+.=|+.+|.+-
T Consensus 430 ~s~~~~~p~~V 440 (476)
T 1fxz_A 430 NSLLNALPEEV 440 (476)
T ss_dssp TCTGGGSCHHH
T ss_pred hHHHHhCCHHH
Confidence 35566676653
No 115
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.32 E-value=8.1 Score=35.63 Aligned_cols=40 Identities=25% Similarity=0.462 Sum_probs=35.6
Q ss_pred cCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCC
Q 005393 579 HPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAG 620 (698)
Q Consensus 579 dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAG 620 (698)
=|.|...-++.+.+=+.|+++|||.-|.| +-||-|.|=+|
T Consensus 18 Ap~h~r~k~msa~LSkeLR~ky~~r~~~I--kkGD~V~Vi~G 57 (121)
T 3j21_U 18 APLHVRQKLMSAPLSRELREKYKVRNLPV--RVGDKVRIMRG 57 (121)
T ss_dssp CCTTGGGGGSEEEBCHHHHHHTCCSEEEC--CSSSEEEECSS
T ss_pred CCcchhhhhhcCcCCHHHHHHhCCccccc--ccCCEEEEeec
Confidence 47888888888888889999999999988 57999999998
No 116
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=37.66 E-value=12 Score=40.56 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=32.7
Q ss_pred ccCccCcceecCHHHHHHHHHHhCc----cceEEEeecCceEEecCCCccccccc
Q 005393 578 IHPIHDQCFYLSSEHKKKLKEEFGV----EPWTFEQKLGEAVFIPAGCPHQVRNL 628 (698)
Q Consensus 578 ~dPIHDQ~fYL~~~hk~kLkeEyGV----epWtf~Q~~GEAVFIPAGcPHQVrNL 628 (698)
+||=.++.+|+-.-.- .+|| ...++.=..||+++||+|.+|-+.|.
T Consensus 65 Hh~~a~E~~yVl~G~g-----~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~ 114 (416)
T 1uij_A 65 HHADADFLLFVLSGRA-----ILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNP 114 (416)
T ss_dssp EEESEEEEEEEEESCE-----EEEEECSSCEEEEEECTTEEEEECTTCEEEEEEC
T ss_pred ccCCCceEEEEEeeEE-----EEEEEECCCCeEEEecCCCEEEECCCCeEEEEec
Confidence 3555566666644321 1343 45667778999999999999999998
No 117
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=35.15 E-value=31 Score=39.01 Aligned_cols=36 Identities=19% Similarity=0.516 Sum_probs=29.4
Q ss_pred CCCceecCCCccccccccccCCC--C---CcccchhchHHH
Q 005393 90 NDERVYCNHCATSIIDLHRSCPK--C---SYELCLTCCKEI 125 (698)
Q Consensus 90 ~DERvyCD~C~TSI~D~HRsC~~--C---sydLCL~CC~EL 125 (698)
.+...+|..|++-+|++...|+. | ..++|+.|.+.-
T Consensus 455 ~~~~~~C~~C~~~lFn~~~v~~~~~~~~~~~v~C~~Ca~~~ 495 (531)
T 3avr_A 455 EEPAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKT 495 (531)
T ss_dssp TCCCEECTTTCCEECSEEEEEECTTCSSEEEEECHHHHHHH
T ss_pred CCCCeeccccchhheeeEEEEecCCCCCCCCcCChhhhhhc
Confidence 45688999999999999988852 4 247999999974
No 118
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=35.07 E-value=15 Score=41.29 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=55.7
Q ss_pred CCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCccccCccCcceecCHHHHH-HHHHHhCccceEEEeecCceEE
Q 005393 538 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKK-KLKEEFGVEPWTFEQKLGEAVF 616 (698)
Q Consensus 538 ~~~GAlWdIFrreDv~KLreyL~kh~~Ef~~~~~~p~~~v~dPIHDQ~fYL~~~hk~-kLkeEyGVepWtf~Q~~GEAVF 616 (698)
..+|.+.-+... +.|-|.. |.--...+....+.-+....||-.++.+|+..-.-+ .+-.+-|-+-.+..=..||.++
T Consensus 351 ~~gG~v~~~~~~-~fP~L~~-l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~v 428 (510)
T 3c3v_A 351 PQAGSLKTANEL-NLLILRW-LGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLV 428 (510)
T ss_dssp TTTEEEEEECTT-TSTTHHH-HTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred CCCeEEEEeccc-cCccccc-ceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEE
Confidence 467777777764 5777732 110001111112222345678888888777543211 1111122222333357899999
Q ss_pred ecCCCccccccccccccccccccCc
Q 005393 617 IPAGCPHQVRNLKSCTKVAVDFVSP 641 (698)
Q Consensus 617 IPAGcPHQVrNL~SCIKVAlDFVSP 641 (698)
||+|.||-+.|...-..+..=|+|+
T Consensus 429 iP~G~~H~~~Ng~e~l~~l~f~~s~ 453 (510)
T 3c3v_A 429 VPQNFAVAGKSQSDNFEYVAFKTDS 453 (510)
T ss_dssp ECTTCEEEEEECSSEEEEEEEESSS
T ss_pred ECCCCeEEEEeCCCCEEEEEEECCC
Confidence 9999999999964444444333344
No 119
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=33.00 E-value=15 Score=33.88 Aligned_cols=55 Identities=11% Similarity=-0.013 Sum_probs=34.2
Q ss_pred CccccCccCcceecCHHHHHHHHHHhCccc--eEEEeecCceEEecCCCccc-ccccccccccc
Q 005393 575 EQVIHPIHDQCFYLSSEHKKKLKEEFGVEP--WTFEQKLGEAVFIPAGCPHQ-VRNLKSCTKVA 635 (698)
Q Consensus 575 ~~v~dPIHDQ~fYL~~~hk~kLkeEyGVep--Wtf~Q~~GEAVFIPAGcPHQ-VrNL~SCIKVA 635 (698)
....|| +.+.+|+=.--- ..+-|-.+ |++ ..||.+++|+|.+|+ +.+...|+=+.
T Consensus 58 p~H~H~-~~ee~~VL~G~~---~~~~g~~~~~~~~--~~Gd~~~~p~g~~H~p~~~~e~~~~l~ 115 (145)
T 2o1q_A 58 AAHVHV-GPGEYFLTKGKM---DVRGGKAAGGDTA--IAPGYGYESANARHDKTEFPVASEFYM 115 (145)
T ss_dssp CCEEES-SCEEEEEEEEEE---EETTCGGGTSEEE--ESSEEEEECTTCEESCCEEEEEEEEEE
T ss_pred CccCCC-CCEEEEEEEeEE---EEcCCCEecceEe--CCCEEEEECcCCccCCeECCCCeEEEE
Confidence 345666 555555432211 12223333 444 689999999999999 88888886433
No 120
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=32.70 E-value=18 Score=39.61 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.2
Q ss_pred ceEEEeecCceEEecCCCcccccccc
Q 005393 604 PWTFEQKLGEAVFIPAGCPHQVRNLK 629 (698)
Q Consensus 604 pWtf~Q~~GEAVFIPAGcPHQVrNL~ 629 (698)
..++.=+.||+++||+|.+|.+.|.-
T Consensus 102 ~~~~~l~~GDv~~iP~G~~H~~~N~g 127 (434)
T 2ea7_A 102 RDSYILEQGHAQKIPAGTTFFLVNPD 127 (434)
T ss_dssp EEEEEEETTEEEEECTTCEEEEEECC
T ss_pred CEEEEeCCCCEEEECCCccEEEEeCC
Confidence 45777788999999999999999995
No 121
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=32.45 E-value=20 Score=37.60 Aligned_cols=48 Identities=17% Similarity=0.365 Sum_probs=32.5
Q ss_pred cccCccCcceecCHHHHHHHHHHhCc---cc--eEEEeecCceEEecCCCccccccccc
Q 005393 577 VIHPIHDQCFYLSSEHKKKLKEEFGV---EP--WTFEQKLGEAVFIPAGCPHQVRNLKS 630 (698)
Q Consensus 577 v~dPIHDQ~fYL~~~hk~kLkeEyGV---ep--Wtf~Q~~GEAVFIPAGcPHQVrNL~S 630 (698)
..|| ..+-+|+..-.- ++.| .+ .++.=..||.++||+|.+|.++|...
T Consensus 95 H~H~-~~E~~~Vl~G~~-----~~~~~~~~g~~~~~~l~~GD~~~ip~g~~H~~~n~~~ 147 (385)
T 1j58_A 95 HWHK-EAEWAYMIYGSA-----RVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEE 147 (385)
T ss_dssp EEES-SCEEEEEEEEEE-----EEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEE
T ss_pred ccCC-hheEEEEEeeeE-----EEEEEeCCCcEEEEEeCCCCEEEECCCCeEEEEECCC
Confidence 4566 566666543321 1333 22 25577899999999999999999865
No 122
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=31.66 E-value=26 Score=29.53 Aligned_cols=34 Identities=26% Similarity=0.774 Sum_probs=27.4
Q ss_pred CCCCceecCCCcccccccc---ccCCCCCcccchhchH
Q 005393 89 GNDERVYCNHCATSIIDLH---RSCPKCSYELCLTCCK 123 (698)
Q Consensus 89 ~~DERvyCD~C~TSI~D~H---RsC~~CsydLCL~CC~ 123 (698)
+.++...|..|..+ |.+. -+|..|+.-+|-.|+.
T Consensus 15 ~d~~~~~C~~C~~~-Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 15 KDDEATHCRQCEKE-FSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCCCCBCTTTCCB-CBTTBCCEECTTTCCEECSGGGC
T ss_pred cCccCCcccCcCCc-ccCccccccCCCCCCEEChHHhC
Confidence 45667789999886 4444 5999999999999986
No 123
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=31.19 E-value=32 Score=28.90 Aligned_cols=34 Identities=21% Similarity=0.744 Sum_probs=27.6
Q ss_pred CCCceecCC--Cccccc----cccccCC-----CCCcccchhchH
Q 005393 90 NDERVYCNH--CATSII----DLHRSCP-----KCSYELCLTCCK 123 (698)
Q Consensus 90 ~DERvyCD~--C~TSI~----D~HRsC~-----~CsydLCL~CC~ 123 (698)
.+..+||-. |.+.|. +....|+ +|+|.+|..|-.
T Consensus 22 ~~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~ 66 (80)
T 2jmo_A 22 QMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKE 66 (80)
T ss_dssp CCSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTE
T ss_pred hCCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCc
Confidence 345999988 999885 3567898 999999999964
No 124
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=29.44 E-value=31 Score=32.01 Aligned_cols=72 Identities=17% Similarity=0.295 Sum_probs=42.9
Q ss_pred HHhhhhHhhcHHHhhhhhhhhhhccccCCcccccccccCCCCceecCCCcccc-c--cccccCCCCCcccchhchHHHh
Q 005393 51 SLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSI-I--DLHRSCPKCSYELCLTCCKEIC 126 (698)
Q Consensus 51 ~lLP~lkqi~~EQ~~E~e~Eaki~G~~~se~~i~~a~~~~DERvyCD~C~TSI-~--D~HRsC~~CsydLCL~CC~ELR 126 (698)
.+|+||.+=.+++..|-|.=.+++..- .++..... .+..-.|.+|..+. | +--+.|..|.+.+|-.|+-...
T Consensus 17 ~Il~Vl~Rd~~l~~~E~~ri~kL~~~l---~~~k~~~~-~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~ 91 (134)
T 1zbd_B 17 IINRVIARAEKMETMEQERIGRLVDRL---ETMRKNVA-GDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETS 91 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTCC-SCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECC
T ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHH---HHHHHHhc-cCCCccccccCCCcccccCCCCCCCCCCcccccccCCccC
Confidence 456666655555544444333333211 01111111 24456799999886 3 6678999999999999987654
No 125
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=29.12 E-value=13 Score=41.54 Aligned_cols=122 Identities=11% Similarity=0.117 Sum_probs=64.4
Q ss_pred CCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCccccCccCcceecCHHHHH-HHHHHhCccceEEEeecCceEE
Q 005393 538 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKK-KLKEEFGVEPWTFEQKLGEAVF 616 (698)
Q Consensus 538 ~~~GAlWdIFrreDv~KLreyL~kh~~Ef~~~~~~p~~~v~dPIHDQ~fYL~~~hk~-kLkeEyGVepWtf~Q~~GEAVF 616 (698)
..+|.+.-+... +.|-|... .--...+....+.-.....||=.++.+|+..-.-+ .+-.+.|-+-.+..=..||.++
T Consensus 346 ~~gG~v~~~~~~-~~P~L~~l-gls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~v 423 (493)
T 2d5f_A 346 PKAGRISTLNSL-TLPALRQF-GLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLV 423 (493)
T ss_dssp TTTEEEEEESTT-TSTTHHHH-TCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred CCCeEEEEeccc-cCcccccc-ceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEE
Confidence 357777777654 67777321 10111121112222345678877887776543211 1111222222233457899999
Q ss_pred ecCCCccccccccccccccccccCcccHHHHHHHHHHhhcCCchhhc
Q 005393 617 IPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRA 663 (698)
Q Consensus 617 IPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~~ 663 (698)
||+|.||...|...-..+..=|.|+..-..- |+.=|+.+|.+-.+
T Consensus 424 vP~G~~H~~~n~~e~~~~l~~~ts~~p~~~~--l~s~~~~~p~eVla 468 (493)
T 2d5f_A 424 VPQNFVVAEQGGEQGLEYVVFKTHHNAVSSY--IKDVFRAIPSEVLS 468 (493)
T ss_dssp ECTTCEEEEEEEEEEEEEEEEESSTTCCEEE--HHHHHHHSCHHHHH
T ss_pred ECCCCeEeeeeCCCCEEEEEEECCCCCccee--HHHHHHhCCHHHHH
Confidence 9999999999976444443333232221111 26667778765543
No 126
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=28.90 E-value=41 Score=28.44 Aligned_cols=36 Identities=25% Similarity=0.732 Sum_probs=28.5
Q ss_pred cCCCCceecCCCcccccccc---ccCCCCCcccchhchHH
Q 005393 88 CGNDERVYCNHCATSIIDLH---RSCPKCSYELCLTCCKE 124 (698)
Q Consensus 88 ~~~DERvyCD~C~TSI~D~H---RsC~~CsydLCL~CC~E 124 (698)
.+.++...|..|.++ |.+- -+|.+|+.-+|-.|...
T Consensus 16 ~pd~~~~~C~~C~~~-Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 16 QEDEDAPACNGCGCV-FTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCTTTCCBCTTTCCB-CCTTSCCEECTTTCCEECTGGGCC
T ss_pred ccCCCCCCCcCcCCc-cccchhcccccCCCcEEChHHhCC
Confidence 345677789999987 5544 58999999999999863
No 127
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=27.55 E-value=32 Score=36.38 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=28.4
Q ss_pred CCCceecCCCccccccccc---cCCCCCcccchhchHHHh
Q 005393 90 NDERVYCNHCATSIIDLHR---SCPKCSYELCLTCCKEIC 126 (698)
Q Consensus 90 ~DERvyCD~C~TSI~D~HR---sC~~CsydLCL~CC~ELR 126 (698)
.....+|++|+..+.-+-| +|..|++-.|-.|..-+.
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC
Confidence 3455689999998863322 599999999999987554
No 128
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=27.10 E-value=31 Score=37.19 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=25.6
Q ss_pred ccceEEEeecCceEEecCCCccccccccccc
Q 005393 602 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCT 632 (698)
Q Consensus 602 VepWtf~Q~~GEAVFIPAGcPHQVrNL~SCI 632 (698)
|.+=+|.=..||++.||+|++||..|...|+
T Consensus 314 I~~~~~~w~~gD~fvvP~w~~h~~~n~~~a~ 344 (368)
T 3nw4_A 314 MNGETTKLEKGDMFVVPSWVPWSLQAETQFD 344 (368)
T ss_dssp ETTEEEEECTTCEEEECTTCCEEEEESSSEE
T ss_pred ECCEEEEecCCCEEEECCCCcEEEEeCCCEE
Confidence 3455688889999999999999999976554
No 129
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.04 E-value=28 Score=27.20 Aligned_cols=25 Identities=24% Similarity=0.817 Sum_probs=19.0
Q ss_pred CceecCCCccccccc----cccCCCCCcc
Q 005393 92 ERVYCNHCATSIIDL----HRSCPKCSYE 116 (698)
Q Consensus 92 ERvyCD~C~TSI~D~----HRsC~~Csyd 116 (698)
.+-+|..|.+++|-. -..|++|+|.
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCCE
Confidence 466899999877655 4489999884
No 130
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=26.69 E-value=22 Score=39.48 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=19.1
Q ss_pred ecCceEEecCCCcccccccccc
Q 005393 610 KLGEAVFIPAGCPHQVRNLKSC 631 (698)
Q Consensus 610 ~~GEAVFIPAGcPHQVrNL~SC 631 (698)
+.||+|.||||.||=.-|--.-
T Consensus 150 ~~GDvi~iPaG~~~~~~N~g~e 171 (466)
T 3kgl_A 150 RTGDTIATHPGVAQWFYNDGNQ 171 (466)
T ss_dssp ETTEEEEECTTCEEEEECCSSS
T ss_pred cCCCEEEECCCCcEEEEeCCCC
Confidence 5699999999999999997643
No 131
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=26.56 E-value=17 Score=25.09 Aligned_cols=9 Identities=44% Similarity=1.206 Sum_probs=5.4
Q ss_pred CceecCCCc
Q 005393 92 ERVYCNHCA 100 (698)
Q Consensus 92 ERvyCD~C~ 100 (698)
+|-||++|-
T Consensus 2 ~RpYCe~CE 10 (26)
T 2hqh_E 2 SRPYCEICE 10 (26)
T ss_dssp --CEETTTT
T ss_pred CCccchHHH
Confidence 677888874
No 132
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.29 E-value=33 Score=28.99 Aligned_cols=34 Identities=26% Similarity=0.837 Sum_probs=26.8
Q ss_pred CCCCceecCCCcccccccc---ccCCCCCcccchhchH
Q 005393 89 GNDERVYCNHCATSIIDLH---RSCPKCSYELCLTCCK 123 (698)
Q Consensus 89 ~~DERvyCD~C~TSI~D~H---RsC~~CsydLCL~CC~ 123 (698)
+.++...|..|..+ |.+. -+|..|+.-+|-.|+.
T Consensus 10 pd~~~~~C~~C~~~-F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 10 PTNNFGNCTGCSAT-FSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SCCCCSSCSSSCCC-CCSSSCCEECSSSCCEECTTTSC
T ss_pred cCCCCCcCcCcCCc-cccchhhhhhcCCCcEEChhhcC
Confidence 45566789999986 3444 5899999999999975
No 133
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=25.59 E-value=27 Score=38.74 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=24.9
Q ss_pred ecCceEEecCCCccccccccccccccccccCccc
Q 005393 610 KLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 643 (698)
Q Consensus 610 ~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 643 (698)
+.||+|.||||.+|=.-|--+-==|++-++.|-|
T Consensus 135 ~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n 168 (465)
T 3qac_A 135 REGDIFAMPAGVSHWAYNNGDQPLVAVILIDTAN 168 (465)
T ss_dssp ETTEEEEECTTCEEEEECCSSSCEEEEEEECTTS
T ss_pred cCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCC
Confidence 6799999999999999997654444444444433
No 134
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=25.19 E-value=19 Score=27.51 Aligned_cols=12 Identities=42% Similarity=1.068 Sum_probs=6.9
Q ss_pred CCCceecCCCcc
Q 005393 90 NDERVYCNHCAT 101 (698)
Q Consensus 90 ~DERvyCD~C~T 101 (698)
..||-|||+|-+
T Consensus 17 ~~eRpYCd~CEv 28 (42)
T 2pzo_E 17 GEERPYCEICEM 28 (42)
T ss_dssp ----CEETTTTE
T ss_pred ccCCcccccccc
Confidence 479999999964
No 135
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.07 E-value=1.3e+02 Score=29.64 Aligned_cols=61 Identities=13% Similarity=0.362 Sum_probs=40.1
Q ss_pred hhhhhhhhhhccccCCcccccccccCCCCc------eecCCCccc--cccccccCCCCCcccchhchHH
Q 005393 64 TQEIEFEASIQRVHSSKVGVSETLCGNDER------VYCNHCATS--IIDLHRSCPKCSYELCLTCCKE 124 (698)
Q Consensus 64 ~~E~e~Eaki~G~~~se~~i~~a~~~~DER------vyCD~C~TS--I~D~HRsC~~CsydLCL~CC~E 124 (698)
+.+.--+=|-+|+..-+++-..+.+..... -.|-.|.++ ++.=-.+|.+|+.-+|-.|+..
T Consensus 129 i~~~Y~~Lk~~G~~FP~~~~~damf~~~~~p~W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 129 VQDTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp HHHHHHHHHHHTCCCCCCCGGGGCCCCCCCCCCCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred HHHHHHHHHhcCCCcccchhHHHhhhcccccccccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 445555556678887666655555432221 269999865 3333468999999999999873
No 136
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=24.65 E-value=17 Score=34.62 Aligned_cols=35 Identities=23% Similarity=0.691 Sum_probs=29.7
Q ss_pred CceecCCCccc---cccccccCCCCCcccchhchHHHh
Q 005393 92 ERVYCNHCATS---IIDLHRSCPKCSYELCLTCCKEIC 126 (698)
Q Consensus 92 ERvyCD~C~TS---I~D~HRsC~~CsydLCL~CC~ELR 126 (698)
..-.|.+|..+ +++--+-|..|.+-+|-.|+..+|
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~ 104 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHP 104 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccC
Confidence 35689999998 788899999999999999995443
No 137
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.36 E-value=14 Score=35.14 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=33.1
Q ss_pred ccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCC
Q 005393 578 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 621 (698)
Q Consensus 578 ~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGc 621 (698)
.=|.|...-.+.+.+-+.|+++|||..|.| +.||-|.|=+|=
T Consensus 20 ~Ap~h~Rrk~msa~LSkelr~ky~vr~~~I--kkGD~V~Vi~Gk 61 (145)
T 2zkr_t 20 NAPSHIRRKIMSSPLSKELRQKYNVRSMPI--RKDDEVQVVRGH 61 (145)
T ss_dssp TCCHHHHGGGGBC-CCHHHHHC-CC-CCBC--CTTCEEEECSST
T ss_pred cCcHHHHHHHHhcccChhHHhhcCcccccc--CCCCEEEEeecC
Confidence 457888888888888888999999998765 579999999985
No 138
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3
Probab=20.92 E-value=32 Score=35.78 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=16.2
Q ss_pred EeecCceEEecCCC-cccccc
Q 005393 608 EQKLGEAVFIPAGC-PHQVRN 627 (698)
Q Consensus 608 ~Q~~GEAVFIPAGc-PHQVrN 627 (698)
.=+.||++||||+. +.++..
T Consensus 268 ~l~~G~~~~ipa~~~~~~i~g 288 (300)
T 1zx5_A 268 DLHRGYSCLVPASTDSFTVES 288 (300)
T ss_dssp EECTTCEEEECTTCCEEEEEE
T ss_pred EEccceEEEEeCCCceEEEEe
Confidence 34679999999998 688764
Done!