Query 005394
Match_columns 698
No_of_seqs 258 out of 769
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 00:07:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 6E-121 2E-125 1017.4 45.0 498 1-500 5-509 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 6E-116 2E-120 980.1 47.1 479 13-496 4-529 (530)
3 4fh3_A Poly(A) RNA polymerase 100.0 3.5E-50 1.2E-54 426.1 25.5 278 36-361 14-348 (349)
4 2ikf_A RNA uridylyl transferas 100.0 1.3E-50 4.6E-55 432.8 18.9 284 14-346 10-349 (353)
5 4e8f_A Poly(A) RNA polymerase 100.0 1.7E-48 5.8E-53 424.2 27.1 304 15-368 25-383 (405)
6 3nyb_A Poly(A) RNA polymerase 100.0 4.9E-48 1.7E-52 409.1 23.1 269 31-348 18-299 (323)
7 2b4v_A RNA editing complex pro 100.0 1.1E-39 3.7E-44 360.5 21.4 304 26-349 11-441 (468)
8 3hj4_A Minor editosome-associa 100.0 7E-37 2.4E-41 329.8 23.0 280 32-361 5-379 (384)
9 3pq1_A Poly(A) RNA polymerase; 100.0 3.6E-36 1.2E-40 331.5 26.0 250 34-362 134-460 (464)
10 1r89_A TRNA nucleotidyltransfe 99.3 1.1E-10 3.7E-15 128.3 24.5 333 37-460 6-360 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.1 1.6E-08 5.3E-13 107.7 24.3 271 36-336 9-321 (349)
12 4at7_A Interleukin enhancer-bi 98.0 0.0012 4.2E-08 70.9 24.7 267 26-345 19-295 (364)
13 4at7_B NF90, interleukin enhan 97.2 0.019 6.5E-07 62.1 20.2 262 45-345 21-327 (383)
14 1no5_A Hypothetical protein HI 97.2 0.0013 4.4E-08 59.1 9.0 44 91-136 28-71 (114)
15 2rff_A Putative nucleotidyltra 96.9 0.0018 6.2E-08 58.4 7.3 53 55-119 10-62 (111)
16 1wot_A Putative minimal nucleo 96.9 0.0014 4.7E-08 57.5 6.3 48 59-119 7-54 (98)
17 1ylq_A Putative nucleotidyltra 96.7 0.0038 1.3E-07 54.5 7.4 28 91-118 18-46 (96)
18 4ebj_A Aminoglycoside nucleoti 94.7 0.027 9.2E-07 58.1 4.9 54 53-118 15-68 (272)
19 1kny_A Kntase, kanamycin nucle 94.2 0.046 1.6E-06 55.5 5.5 29 91-119 32-60 (253)
20 2fmp_A DNA polymerase beta; nu 93.8 0.4 1.4E-05 51.0 11.9 117 89-240 171-298 (335)
21 2bcq_A DNA polymerase lambda; 92.5 0.5 1.7E-05 50.2 10.3 116 89-240 168-292 (335)
22 3jz0_A Lincosamide nucleotidyl 89.4 0.84 2.9E-05 47.7 8.2 105 45-172 12-117 (287)
23 1jaj_A DNA polymerase beta-lik 88.8 0.63 2.1E-05 45.3 6.3 114 83-240 24-142 (174)
24 2ihm_A POL MU, DNA polymerase 88.0 1.8 6.3E-05 46.3 9.9 51 89-141 175-225 (360)
25 1jms_A Terminal deoxynucleotid 84.3 6.1 0.00021 42.7 11.6 52 89-141 195-247 (381)
26 3b0x_A DNA polymerase beta fam 82.4 3.7 0.00013 46.4 9.4 107 90-241 180-286 (575)
27 1v4a_A Glutamate-ammonia-ligas 70.9 7 0.00024 42.8 7.2 48 89-136 153-208 (440)
28 2fcl_A Hypothetical protein TM 60.5 25 0.00086 33.6 8.1 88 57-168 15-107 (169)
29 3k7d_A Glutamate-ammonia-ligas 59.3 20 0.00069 40.0 8.1 61 76-136 218-289 (498)
30 2pbe_A AAD6, aminoglycoside 6- 54.3 17 0.0006 37.6 6.2 78 91-173 24-112 (294)
31 2w9m_A Polymerase X; SAXS, DNA 44.5 30 0.001 39.1 6.6 94 93-241 182-276 (578)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=5.6e-121 Score=1017.41 Aligned_cols=498 Identities=42% Similarity=0.753 Sum_probs=451.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 005394 1 MSSSERMSSPPPPKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRG 80 (698)
Q Consensus 1 ~~~~~~~~s~~~~~~~Gvt~Pis~~~Pt~~d~~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g 80 (698)
|++..+.+++++.++||||+|||+++||++|++++.+|+++|++++++||+||.++|++|+++|+++|++|++++++++|
T Consensus 5 ~~~~~~~~~~~~~~~~g~~~pis~~~p~~~d~~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~ 84 (514)
T 1q79_A 5 VTTQGSQQTQPPQKHYGITSPISLAAPKETDALLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKN 84 (514)
T ss_dssp --------------CCSSSCCSCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccccCCcccccCCCCCCcCCCCCHHHHHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33333334455789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCeEEEEeeeecccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecC
Q 005394 81 YSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDG 160 (698)
Q Consensus 81 ~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~V~el~~I~~ArVPIIKf~~~G 160 (698)
++++++.+++++|++||||++|+|+|+||||++|++|.+++++ +||..++++|++.++++++++|++|+||||||+++|
T Consensus 85 ~~~~~~~~~~~~v~~FGS~~lG~~~p~SDID~~~v~p~~~~~~-dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~g 163 (514)
T 1q79_A 85 LPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDG 163 (514)
T ss_dssp CCHHHHTTCBCEEEEEHHHHHTCCCTTCCEEEEEEECTTSCHH-HHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETT
T ss_pred CchhhcccCCceEEEeeeeccCCCCCCCceeEEEecCCcCCHH-HHHHHHHHHHhcCccCceEEEecCCcccEEEEEECC
Confidence 9999999999999999999999999999999999999999985 999999999999999999999999999999999999
Q ss_pred eeeeEEeeeccccccccccccccccccCCCCcccccccchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCccCc
Q 005394 161 LSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGF 240 (698)
Q Consensus 161 I~iDLsfa~l~~~~vp~~l~i~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~ 240 (698)
|+|||+||+++...+|+++++.|+++|++||++|++||||+|++++|++++|+.++||.++|+||+|||+||||++++||
T Consensus 164 i~vDL~f~~~~~~~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~ 243 (514)
T 1q79_A 164 IEIDILFARLALQTIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGF 243 (514)
T ss_dssp EEEEEEEEECSCSSBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTS
T ss_pred eeEEEEEecCCcccCcccccCCchhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCCCCCceeecccccccCCcccccCCCCCCCCCCceEEeCCCCCCC
Q 005394 241 LGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCM 320 (698)
Q Consensus 241 LGG~swaLLVa~vcQlyPnas~~~LL~~FF~~Ys~wdW~~pV~L~~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~P~~ 320 (698)
||||+|+||||++||+|||+++++||.+||++|++|||++||++++++++.+++++|+|+.+++|+.|+|||+||++|++
T Consensus 244 lgg~s~~lLVa~~~Ql~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~ 323 (514)
T 1q79_A 244 LGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 323 (514)
T ss_dssp BCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCC
T ss_pred ccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCC
Confidence 99999999999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred CccCccCHhHHHHHHHHHHHHHHHHHHhhhcCccccccccccchhhhcccEEEEEEEeCChhhhhhhhhhhHhhHHHHHH
Q 005394 321 NSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTL 400 (698)
Q Consensus 321 Nsa~nVs~sTlrvI~~EF~Ra~~Il~~i~~~~~~W~~Lf~p~~Ff~~Yk~yl~I~v~a~~~e~~~~w~GwVESRlR~Lv~ 400 (698)
|+|+||+.+|+++|++||+||+++++++..++.+|++||+|++||.+|+|||+|++++.+++++.+|.||||||||.|+.
T Consensus 324 N~~~nVs~st~~~I~~Ef~rA~~il~~i~~~~~~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~ 403 (514)
T 1q79_A 324 NSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVG 403 (514)
T ss_dssp BTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHH
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCceeeccCCCCCCCCCC----CCceeEEEEeeeeCC---CCccCCCceecchHHHHHHHHHHhhccccCCceE
Q 005394 401 MIERDTYGKLQCHPYPHEYVDTSK----PCAHCAFFMGLQRKP---GEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGME 473 (698)
Q Consensus 401 ~LE~~~~~~l~ahp~P~~f~~~~~----~~~~~~ffIGL~~~~---~~~~~~~~~~dl~~~v~eF~~~i~~~~~~~~~m~ 473 (698)
+||+.. ++..|||||++|.+... ..|.++|||||.++. ....+.+.++||+.++++|++.+++|..|+++|+
T Consensus 404 ~le~~~-~i~~a~~~P~~f~~~~~~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~ 482 (514)
T 1q79_A 404 SLEKNE-FITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMK 482 (514)
T ss_dssp HHHTST-TEEEEEECSCCEECCCSCTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCE
T ss_pred HhccCC-CceeeecCccccCCccccccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcE
Confidence 999853 44559999999987643 357889999999875 2222345679999999999999999999999999
Q ss_pred EEEEeeccCCCCCCcCCCCccccCCCc
Q 005394 474 ICVSHIRRKQIPPYVFPEGYKRTRHPR 500 (698)
Q Consensus 474 i~v~~vkr~~LP~~v~~~g~~~~~~~~ 500 (698)
|+|+|||+++||++||++|++++|+.+
T Consensus 483 i~v~~vk~~~Lp~~v~~~~~~~~~~~~ 509 (514)
T 1q79_A 483 IAAMHVKRKQLHQLLPSHVLQKKKKHS 509 (514)
T ss_dssp EEEEEEEHHHHGGGCC-----------
T ss_pred EEEEEechHHCchhhcchhccCCCCCC
Confidence 999999999999999999999888754
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=5.8e-116 Score=980.11 Aligned_cols=479 Identities=39% Similarity=0.720 Sum_probs=454.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeE
Q 005394 13 PKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANAL 92 (698)
Q Consensus 13 ~~~~Gvt~Pis~~~Pt~~d~~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~ 92 (698)
.++||||+|||+++||++|++++.+|+++|++++++||+||.++|++|+++|+++|++|++++++++|++++++.+++++
T Consensus 4 ~~~~g~t~pis~~~p~~~d~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~ 83 (530)
T 2hhp_A 4 QKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGK 83 (530)
T ss_dssp CGGGCSSCCSCCCCCCHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCE
T ss_pred cccCccCCCCcCCCCChHHhhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCce
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeecccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecCeeeeEEeeeccc
Q 005394 93 IFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISR 172 (698)
Q Consensus 93 I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~V~el~~I~~ArVPIIKf~~~GI~iDLsfa~l~~ 172 (698)
|++||||++|+|+|+||||++|++|.+++++ +||..++++|++.++++++++|++|+||||||+++||+|||+|++++.
T Consensus 84 V~~FGSy~lG~~~p~SDID~~v~~p~~~~~~-dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~ 162 (530)
T 2hhp_A 84 IFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQ 162 (530)
T ss_dssp EEEEHHHHHTCCCTTCCEEEEEEECTTCCHH-HHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSS
T ss_pred EEEecccccCCCCCCCceeEEEecCCcCCHH-HHHHHHHHHHhcCCCCceEEEecCCcccEEEEEECCEeeEEEEecccc
Confidence 9999999999999999999999999999985 999999999999899999999999999999999999999999999988
Q ss_pred cccccccccccccccCCCCcccccccchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCccCccchHHHHHHHHH
Q 005394 173 LVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVAR 252 (698)
Q Consensus 173 ~~vp~~l~i~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~ 252 (698)
..+|+++++.++++|++||++|++||||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|+||||+
T Consensus 163 ~~ip~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~ 242 (530)
T 2hhp_A 163 PQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVAR 242 (530)
T ss_dssp SCBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHH
T ss_pred ccCCcccCCCchhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCChHHHHHHHHHHhhcCCCCCceeecccccccCCcccccCCCCCCCCCCceEEeCCCCCCCCccCccCHhHHH
Q 005394 253 VCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLR 332 (698)
Q Consensus 253 vcQlyPnas~~~LL~~FF~~Ys~wdW~~pV~L~~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlr 332 (698)
+||+||++++++||.+||++|++|||++||++++++++.+++++|+|+.|.+|+.|+|||+||++|++|+|+||+.+|++
T Consensus 243 ~lQl~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~ 322 (530)
T 2hhp_A 243 ICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKK 322 (530)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHH
Confidence 99999999999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCccccccccccchhhhcccEEEEEEEeC-ChhhhhhhhhhhHhhHHHHHHHhhhcccCcee
Q 005394 333 VMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAA-NADDLLAWKGWVESRLRQLTLMIERDTYGKLQ 411 (698)
Q Consensus 333 vI~~EF~Ra~~Il~~i~~~~~~W~~Lf~p~~Ff~~Yk~yl~I~v~a~-~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~l~ 411 (698)
+|++||+||+++|+++..++.+|.+||+|++||.+|+|||+|+++++ +++++..|.||||||+|.|+.+||+ .+++..
T Consensus 323 ~I~~Ef~rA~~ll~~i~~~~~~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~-~~~i~~ 401 (530)
T 2hhp_A 323 VILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEV-LAGIKI 401 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHT-STTEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhc-ccCcee
Confidence 99999999999999999888999999999999999999999999998 9999999999999999999999998 556777
Q ss_pred eccCCCCCCCCC-------------------------------------------CCCceeEEEEeeeeCCCCccCCCce
Q 005394 412 CHPYPHEYVDTS-------------------------------------------KPCAHCAFFMGLQRKPGEVVQEGQQ 448 (698)
Q Consensus 412 ahp~P~~f~~~~-------------------------------------------~~~~~~~ffIGL~~~~~~~~~~~~~ 448 (698)
|||||++|.+.. ...+.++|||||.++.. ..+++
T Consensus 402 a~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~---~~~~~ 478 (530)
T 2hhp_A 402 AHPFTKPFESSYCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE---NKKEK 478 (530)
T ss_dssp EEECSSCEEEEEECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC-------CCC
T ss_pred eecCCcccCccccccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCC---CCCce
Confidence 999999984310 12356899999998753 23568
Q ss_pred ecchHHHHHHHHHHhhccc-cCCc-eE-EEEEeeccCCCCCCcCCCCcccc
Q 005394 449 FDIRGSVEEFKLSINMYMF-WKPG-ME-ICVSHIRRKQIPPYVFPEGYKRT 496 (698)
Q Consensus 449 ~dl~~~v~eF~~~i~~~~~-~~~~-m~-i~v~~vkr~~LP~~v~~~g~~~~ 496 (698)
+||+.++++|++.|++|.. |+++ |+ |.|+|||+++||++||++|++|+
T Consensus 479 ~di~~~~~~F~~~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v~~~~~~~~ 529 (530)
T 2hhp_A 479 VDIHIPCTEFVNLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEKRP 529 (530)
T ss_dssp CCCHHHHHHHHHHHHHTSTTTTCSSSEEEEEEEEEGGGCCGGGSCTTSCCC
T ss_pred EeChhHHHHHHHHHHhhhhhcccCCcceEEEEEechhhCCHhhccCCCcCC
Confidence 9999999999999999997 8876 89 99999999999999999999774
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=3.5e-50 Score=426.05 Aligned_cols=278 Identities=20% Similarity=0.237 Sum_probs=226.3
Q ss_pred HHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeeecccCcCCCCCeeEE
Q 005394 36 RELEKFLVE--AGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDAL 113 (698)
Q Consensus 36 ~eL~~~L~~--~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l 113 (698)
.+|.+++.+ ..+.||++|.++|++++++|+++++++. ++++|++||||++|+++|+||||++
T Consensus 14 ~el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~----------------p~~~v~~fGS~~~g~~~~~SDiDl~ 77 (349)
T 4fh3_A 14 KEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRIS----------------PDAELVAFGSLESGLALKNSDMDLC 77 (349)
T ss_dssp HHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCEEEEESHHHHTCCBSSCCEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEEeeccCCCCCCCCCEEEE
Confidence 345555433 1366999999999999999999998642 3689999999999999999999999
Q ss_pred eecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEe-------cCeeeeEEeeeccccccccccccccccc
Q 005394 114 CVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF-------DGLSIDLLYASISRLVVREDLDISDMSV 186 (698)
Q Consensus 114 ~v~P~~v~re~~Ff~~l~~~L~~~~~V~el~~I~~ArVPIIKf~~-------~GI~iDLsfa~l~~~~vp~~l~i~~d~~ 186 (698)
|+.|.....+ .++..+...+.+ ...+++.|.+|+||||||.+ .|+.||++|++
T Consensus 78 v~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~----------------- 137 (349)
T 4fh3_A 78 VLMDSRVQSD-TIALQFYEELIA--EGFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNN----------------- 137 (349)
T ss_dssp EECCTTSCHH-HHHHHHHHHHHH--TTEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESC-----------------
T ss_pred EecCCCCChH-HHHHHHHHHHHh--hcccceEeeeeeeeeEEEEecccccccccceeecCcCc-----------------
Confidence 9999887764 666666555554 34578889999999999997 37899999875
Q ss_pred cCCCCcccccccchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCccCccchHHHHHHHHHHHhhC------CC-
Q 005394 187 LNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLY------PN- 259 (698)
Q Consensus 187 L~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQly------Pn- 259 (698)
.+|++++++|..+++.+++||+++++||+|||+||||+++.|+||||+|+|||++|||.. |+
T Consensus 138 -----------~~g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l 206 (349)
T 4fh3_A 138 -----------RLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNL 206 (349)
T ss_dssp -----------HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCS
T ss_pred -----------chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchh
Confidence 579999999999999999999999999999999999999999999999999999999952 32
Q ss_pred -------------------------------CChHHHHHHHHHHhh-cCCCCCceeecccccccCC--cccc-------c
Q 005394 260 -------------------------------AVPSMLVSRFFRVYT-MWRWPNPVMLCAIDEAELG--FSVW-------D 298 (698)
Q Consensus 260 -------------------------------as~~~LL~~FF~~Ys-~wdW~~pV~L~~i~~g~lg--~~~W-------~ 298 (698)
.++++||.+||+||+ +|||++.|+.....++.+. .+.| +
T Consensus 207 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~~ 286 (349)
T 4fh3_A 207 LLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTG 286 (349)
T ss_dssp SSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC-------
T ss_pred hhccccccccccCcccccccchhhcccccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhcccccccccC
Confidence 368999999999999 6999999886543322211 1234 3
Q ss_pred CCCCCCCCCCceEEeCCCCCCCCccCccCHhHHHHHHHHHHHHHHHHHHhhhcCccccccccc
Q 005394 299 PRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEP 361 (698)
Q Consensus 299 p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~EF~Ra~~Il~~i~~~~~~W~~Lf~p 361 (698)
+..+.....++|+|+||++|++|+|++|+..+++.|+.||+||+++|++.. ...+|+.||+.
T Consensus 287 ~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~-~~~~~~~lfe~ 348 (349)
T 4fh3_A 287 SADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS-YPIPYDSLFEE 348 (349)
T ss_dssp --------CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS-SSCCGGGGGSC
T ss_pred cccccCCCCceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc-cCCCHHHHhhc
Confidence 333444456899999999999999999999999999999999999998743 24689999985
No 4
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=1.3e-50 Score=432.78 Aligned_cols=284 Identities=17% Similarity=0.194 Sum_probs=226.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEE
Q 005394 14 KQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALI 93 (698)
Q Consensus 14 ~~~Gvt~Pis~~~Pt~~d~~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I 93 (698)
..-|++++++.++|+++++ +.+|++++++ .+++.+|.++|++++++|++++++. .++++|
T Consensus 10 ~~~~~~~~~~~~~P~~~~l--~~~l~~~~~~--~~~~~~e~~~r~~~~~~l~~~i~~~----------------~p~~~v 69 (353)
T 2ikf_A 10 HSSGLVPRGSHMPPSPAVV--GRSLVNSFKQ--FVSKDLHTRHVDATYRLVLDCVAAV----------------DPLMRL 69 (353)
T ss_dssp -------------CCHHHH--HHHHHHHTTT--TCC-----CCHHHHHHHHHHHHHHH----------------CTTCEE
T ss_pred ccccceecccCCCCCHHHH--HHHHHHHHHH--hcCChhhHHHHHHHHHHHHHHHHHH----------------CCCcEE
Confidence 3469999999999999997 7899999976 5578899999999999999999863 147999
Q ss_pred EEeeeec-ccCcCCCCCeeEEeecCCccCc--------------hhhHHHHHHHHHHhccCCceEEEeccCccceEEEEe
Q 005394 94 FTFGSYR-LGVHGPGADIDALCVGPSYVSR--------------EEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF 158 (698)
Q Consensus 94 ~~FGSy~-lGv~~p~SDID~l~v~P~~v~r--------------e~~Ff~~l~~~L~~~~~V~el~~I~~ArVPIIKf~~ 158 (698)
++||||+ +|+++|+||||++|+.|..+.. ..+++..+.+.|++...+.+++.|.+|+||||||++
T Consensus 70 ~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIiK~~~ 149 (353)
T 2ikf_A 70 YTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKG 149 (353)
T ss_dssp EEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSSSSCEEEEEC
T ss_pred EEecCccccCCCCCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhcCCCCceEEecccceeEEEEEc
Confidence 9999998 9999999999999988753210 036788899999987778899999999999999999
Q ss_pred -cCeeeeEEeeeccccccccccccccccccCCCCcccccccchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCc
Q 005394 159 -DGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNV 237 (698)
Q Consensus 159 -~GI~iDLsfa~l~~~~vp~~l~i~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~ 237 (698)
.||+|||+|++ .+|++++++|..++..+++||+++++||+|||+||||+++
T Consensus 150 ~~~i~~Dis~~n----------------------------~~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r~l~~~~ 201 (353)
T 2ikf_A 150 GGAVDFDITAYR----------------------------RNGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASV 201 (353)
T ss_dssp SSSCEEEEEESC----------------------------CHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCBTTS
T ss_pred CCCcEEEEEecC----------------------------ccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCCCCCC
Confidence 69999999976 4789999999999999999999999999999999999999
Q ss_pred c-CccchHHHHHHHHHHHhhC------C------------------------CCChHHHHHHHHHHhh-cCCCCCceeec
Q 005394 238 T-GFLGGVNWALLVARVCQLY------P------------------------NAVPSMLVSRFFRVYT-MWRWPNPVMLC 285 (698)
Q Consensus 238 ~-G~LGG~swaLLVa~vcQly------P------------------------nas~~~LL~~FF~~Ys-~wdW~~pV~L~ 285 (698)
. |+||||+|+|||++|||.. | +.++++||.+||+||+ +|||+++|+..
T Consensus 202 ~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi 281 (353)
T 2ikf_A 202 IGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISL 281 (353)
T ss_dssp TTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECS
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCCCcCccccChhhccCCCcCCccccCCCCcccHHHHHHHHHHHhccccCcCceEEEc
Confidence 9 9999999999999999852 3 2357999999999999 79999997753
Q ss_pred ccccccC--CcccccCC------CCCCCCCCceEEeCCCCCCCCccCccCHhHHHHHHHHHHHHHHHHH
Q 005394 286 AIDEAEL--GFSVWDPR------KNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICE 346 (698)
Q Consensus 286 ~i~~g~l--g~~~W~p~------~~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~EF~Ra~~Il~ 346 (698)
.. .+.+ ..+.|++. .+..++.+.|+|+||++|.+|+|++|+.++++.|++||++|++++.
T Consensus 282 ~~-~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~~ 349 (353)
T 2ikf_A 282 NR-PGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTAL 349 (353)
T ss_dssp SS-SSCEEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTTT
T ss_pred CC-CcceechhhcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 32 1211 12467642 2223456889999999999999999999999999999999998763
No 5
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=1.7e-48 Score=424.24 Aligned_cols=304 Identities=18% Similarity=0.201 Sum_probs=243.7
Q ss_pred CCCCCCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEE
Q 005394 15 QYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIF 94 (698)
Q Consensus 15 ~~Gvt~Pis~~~Pt~~d~~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~ 94 (698)
-.|..++-|-....+..-+++.+|.+++.. +.||++|.++|++++.+|+.+++++. ++++|+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~--i~Pt~eE~~~R~~v~~~l~~~i~~~~----------------p~~~v~ 86 (405)
T 4e8f_A 25 NLHISKSCSYQKVPNSHKEFTKFCYEVYNE--IKISDKEFKEKRAALDTLRLCLKRIS----------------PDAELV 86 (405)
T ss_dssp -------------CCSCHHHHHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEEE
T ss_pred cccccccCccccCchHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEE
Confidence 356666655555556666888999999986 67999999999999999999999753 368999
Q ss_pred EeeeecccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEe---c----CeeeeEEe
Q 005394 95 TFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF---D----GLSIDLLY 167 (698)
Q Consensus 95 ~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~V~el~~I~~ArVPIIKf~~---~----GI~iDLsf 167 (698)
+|||+++|+++|+||||++|+.|.....+ +++..+.+.|++. ..+++.|.+|+||||||.+ . ||+|||+|
T Consensus 87 ~fGS~~~G~~~~~SDiDl~v~~~~~~~~~-~~l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~ 163 (405)
T 4e8f_A 87 AFGSLESGLALKNSDMDLCVLMDSRVQSD-TIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGF 163 (405)
T ss_dssp EESHHHHTCCBSSCCEEEEEECCC---CT-THHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEE
T ss_pred EEeeccCCCCCCCCCEEEEEEecCCCCHH-HHHHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCceEEEEee
Confidence 99999999999999999999998865553 6888999999975 6789999999999999995 4 99999999
Q ss_pred eeccccccccccccccccccCCCCcccccccchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCccCccchHHHH
Q 005394 168 ASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWA 247 (698)
Q Consensus 168 a~l~~~~vp~~l~i~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swa 247 (698)
++ .+|++.+.+|..++..+++||+++++||+|||+||||+++.|+||||+|+
T Consensus 164 ~n----------------------------~~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l~ 215 (405)
T 4e8f_A 164 NN----------------------------RLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYV 215 (405)
T ss_dssp SC----------------------------HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHHH
T ss_pred cc----------------------------cchHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHHH
Confidence 86 25788889998888888999999999999999999999999999999999
Q ss_pred HHHHHHH-hh-----CCC--------------------------------CChHHHHHHHHHHhh-cCCCCCceeecccc
Q 005394 248 LLVARVC-QL-----YPN--------------------------------AVPSMLVSRFFRVYT-MWRWPNPVMLCAID 288 (698)
Q Consensus 248 LLVa~vc-Ql-----yPn--------------------------------as~~~LL~~FF~~Ys-~wdW~~pV~L~~i~ 288 (698)
|||++|| |. +|+ .+++.||.+||+||+ +|||.+.|+.....
T Consensus 216 lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~~ 295 (405)
T 4e8f_A 216 LMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRP 295 (405)
T ss_dssp HHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSST
T ss_pred HHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhhhccccccccHHHHHHHHHHHHhcccCCCCcEEEEecC
Confidence 9999999 73 232 468999999999999 89999987764422
Q ss_pred cccCC--cccccCCCC-------CCCCCCceEEeCCCCCCCCccCccCHhHHHHHHHHHHHHHHHHHHhhhcCccccccc
Q 005394 289 EAELG--FSVWDPRKN-------RRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALF 359 (698)
Q Consensus 289 ~g~lg--~~~W~p~~~-------~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~EF~Ra~~Il~~i~~~~~~W~~Lf 359 (698)
.+.+. .+.|....+ ...+.+.|+|+||++|.+|+|++|+..+++.|+.||+||++++.+... +.+|+.||
T Consensus 296 g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~-~~~w~~Lf 374 (405)
T 4e8f_A 296 DGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSY-PIPYDSLF 374 (405)
T ss_dssp TCCCBHHHHTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSS-SCCGGGGG
T ss_pred CcccccccccccccccccccccccccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhcc-CCCHHHHh
Confidence 22222 256875421 123568999999999999999999999999999999999999988542 57899999
Q ss_pred cccchhhhc
Q 005394 360 EPYLFFESY 368 (698)
Q Consensus 360 ~p~~Ff~~Y 368 (698)
+++++..+.
T Consensus 375 ~~~~~~~~~ 383 (405)
T 4e8f_A 375 EEAPIPPRR 383 (405)
T ss_dssp SCCCCC---
T ss_pred CcCCCcccc
Confidence 999998753
No 6
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-48 Score=409.07 Aligned_cols=269 Identities=22% Similarity=0.288 Sum_probs=230.4
Q ss_pred HHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeeecccCcCCCCCe
Q 005394 31 DMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADI 110 (698)
Q Consensus 31 d~~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDI 110 (698)
--.+++||.+++.. +.||++|.++|++++++|+++++++. ++++|++|||+++|+++|+|||
T Consensus 18 ~~~L~~Ei~~f~~~--i~Pt~eE~~~R~~~~~~l~~~~~~~~----------------p~~~v~~fGS~~~g~~~~~SDi 79 (323)
T 3nyb_A 18 SDWLTFEIKDFVAY--ISPSREEIEIRNQTISTIREAVKQLW----------------PDADLHVFGSYSTDLYLPGSDI 79 (323)
T ss_dssp HHHHHHHHHHHHHH--TSCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCCEEEESTTTTTCCCTTSCE
T ss_pred HHHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEeCccccCCCCCCCCc
Confidence 34477778777764 78999999999999999999998752 3578999999999999999999
Q ss_pred eEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEe--cCeeeeEEeeeccccccccccccccccccC
Q 005394 111 DALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF--DGLSIDLLYASISRLVVREDLDISDMSVLN 188 (698)
Q Consensus 111 D~l~v~P~~v~re~~Ff~~l~~~L~~~~~V~el~~I~~ArVPIIKf~~--~GI~iDLsfa~l~~~~vp~~l~i~~d~~L~ 188 (698)
|++|+.|.......+++..+.+.|++.+.++++++|.+|+||||||++ .||+|||+|++
T Consensus 80 Dl~v~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~------------------- 140 (323)
T 3nyb_A 80 DCVVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFER------------------- 140 (323)
T ss_dssp EEEECSSCCGGGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSC-------------------
T ss_pred eEEEecCCCChhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecC-------------------
Confidence 999999886532246889999999998888999999999999999996 79999999986
Q ss_pred CCCcccccccchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCccCccchHHHHHHHHHHHhhCCC---------
Q 005394 189 DVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPN--------- 259 (698)
Q Consensus 189 ~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQlyPn--------- 259 (698)
.+|++++++|.++++.+++||+++++||+|||+||||+++.|+||||+|+|||+++||++|+
T Consensus 141 ---------~~g~~~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~ 211 (323)
T 3nyb_A 141 ---------TNGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPK 211 (323)
T ss_dssp ---------SSTTHHHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGG
T ss_pred ---------cHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCcc
Confidence 37899999999999999999999999999999999999999999999999999999999985
Q ss_pred CChHHHHHHHHHHhh-cCCCCCceeecccccc-cCCcccccCCCCCCCCCCceEEeCCCCCCCCccCccCHhHHHHHHHH
Q 005394 260 AVPSMLVSRFFRVYT-MWRWPNPVMLCAIDEA-ELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQ 337 (698)
Q Consensus 260 as~~~LL~~FF~~Ys-~wdW~~pV~L~~i~~g-~lg~~~W~p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~E 337 (698)
.++++||.+||+||+ +|||++.++....... ....+.|... ++..+.+.|+|+||++|++|+++++ ..++.|+.|
T Consensus 212 ~~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~~~~~~k~~~~~~-~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~ 288 (323)
T 3nyb_A 212 DNLGVLLIEFFELYGKNFGYDDVALGSSDGYPVYFPKSTWSAI-QPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKA 288 (323)
T ss_dssp GCHHHHHHHHHHHHHHTCCTTTEEEEESSSCEEEEEGGGCGGG-CSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHH
T ss_pred ccHHHHHHHHHHHhccccCCCCcEEEEecCCcceeeHHhcccc-cccCCCceEEEeCCCCCCcccccch--HHHHHHHHH
Confidence 368999999999999 8999998665332111 1223567642 2223467899999999999999985 358899999
Q ss_pred HHHHHHHHHHh
Q 005394 338 FQYGNTICEEV 348 (698)
Q Consensus 338 F~Ra~~Il~~i 348 (698)
|++|++++.+-
T Consensus 289 F~~A~~~L~~~ 299 (323)
T 3nyb_A 289 FAGAFDLLTNR 299 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999874
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=1.1e-39 Score=360.54 Aligned_cols=304 Identities=14% Similarity=0.172 Sum_probs=216.6
Q ss_pred CCCHHHHH-hhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeee-cccC
Q 005394 26 GPTEADMQ-RNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSY-RLGV 103 (698)
Q Consensus 26 ~Pt~~d~~-~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy-~lGv 103 (698)
.|.+..++ ....+.+...+.. +++++.+.|+.++++|+.++++|. .+++|++|||| .+|+
T Consensus 11 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~a~~~l~~~v~~~~----------------p~a~v~~FGS~v~~Gl 72 (468)
T 2b4v_A 11 NPSPDHYAVWGKAIMAENNRRV--GPEHMFRTAIRAQQQLQGLADKWT----------------PDAKVYCCGSMVTYGQ 72 (468)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHB--CCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEEEEETHHHHHSS
T ss_pred CCChHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHC----------------CCcEEEEeeCchhcCC
Confidence 45555554 3445555544433 788999999999999999999874 37999999999 7999
Q ss_pred cCCCCCeeEEeecCCccCch-hhHH--HHHHHHHHhc-cC--CceEEEeccCccceEEEEec------------------
Q 005394 104 HGPGADIDALCVGPSYVSRE-EDFF--FILHNILAEM-EE--VTELQPVLDAHVPVMKFKFD------------------ 159 (698)
Q Consensus 104 ~~p~SDID~l~v~P~~v~re-~~Ff--~~l~~~L~~~-~~--V~el~~I~~ArVPIIKf~~~------------------ 159 (698)
++|+||||++|+.+...... .... .++.+.|++. ++ +.++++|++||||||||++.
T Consensus 73 ~lp~SDiDl~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~ 152 (468)
T 2b4v_A 73 MERGSDLDLACMFDDPYPSHEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEED 152 (468)
T ss_dssp CBTTCCEEEEEECSSSSCCHHHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHH
T ss_pred CCCCCceeEEEecCCCCccchhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEEeccccccccccccccccccc
Confidence 99999999999987321111 1111 2477888875 44 57899999999999999832
Q ss_pred ----------------------------------------C--eeeeEEeeeccc-----cccccc--cc--cccccc--
Q 005394 160 ----------------------------------------G--LSIDLLYASISR-----LVVRED--LD--ISDMSV-- 186 (698)
Q Consensus 160 ----------------------------------------G--I~iDLsfa~l~~-----~~vp~~--l~--i~~d~~-- 186 (698)
| ..+|++|.+... ...|+. +. +.++-.
T Consensus 153 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 232 (468)
T 2b4v_A 153 RKARTALLDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRD 232 (468)
T ss_dssp HHHTEEEEEEESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEE
T ss_pred cccccccccccccccccccccchhhhcccccccccccccccccccceeecccccchhhhhcccccccccccccccccccc
Confidence 1 225566664211 001110 00 000000
Q ss_pred ---------cCCCC-cccccccchhhhHHHHHHhCCChhh-HHHHHHHHHHHHHHhCCCCCccCccchHHHHHHHHHHHh
Q 005394 187 ---------LNDVD-EPTVRSLNGCRVADQILKLVPNVEH-FCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQ 255 (698)
Q Consensus 187 ---------L~~lD-e~svrSLNG~Rvtd~Il~lVP~~~~-FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQ 255 (698)
..++. +-|+. .+|++++++|..++-.+++ ||+|+++||+|||+||||+++.|+||||+|+|||++|+|
T Consensus 233 ~ld~rf~~~~~gi~~DISfn-~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ 311 (468)
T 2b4v_A 233 VLDVRFVPEMFMYRWDISFV-GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLL 311 (468)
T ss_dssp ESCTTSCCGGGSSCEEEESC-SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHH
T ss_pred cccccccccccceEEEEecc-hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHH
Confidence 11111 23555 7999999999999888889 999999999999999999999999999999999999998
Q ss_pred hC-----------------CC------------CChHHHHHHHHHHhh-cCCCCCceeecccccccC--CcccccCCCCC
Q 005394 256 LY-----------------PN------------AVPSMLVSRFFRVYT-MWRWPNPVMLCAIDEAEL--GFSVWDPRKNR 303 (698)
Q Consensus 256 ly-----------------Pn------------as~~~LL~~FF~~Ys-~wdW~~pV~L~~i~~g~l--g~~~W~p~~~~ 303 (698)
.. |+ .++++||.+||+||+ +|||.+.++..... +.+ ..+.|+...+.
T Consensus 312 ~~~~lP~v~P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~g-~~~~K~~~~w~~~~n~ 390 (468)
T 2b4v_A 312 VTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRN-RRSYRSDIGWNFPQNK 390 (468)
T ss_dssp HTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSS-SCEEHHHHTCCCGGGE
T ss_pred hcCcCCCCCcccccchhhcccccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEEecCC-cceecccccccccccc
Confidence 64 11 148999999999999 89999987643211 111 12457642221
Q ss_pred -CCCCCceEEeCCCCC----CCCccCccCHhHHHHHHHHHHHHHHHHHHhh
Q 005394 304 -RDKTHHMPIITPAYP----CMNSSYNVSTSTLRVMMDQFQYGNTICEEVE 349 (698)
Q Consensus 304 -~dr~~~MpIiTP~~P----~~Nsa~nVs~sTlrvI~~EF~Ra~~Il~~i~ 349 (698)
....+.|+|+||++| .+|+|++|+..+++.|+.||++|+++|+...
T Consensus 391 ~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 391 KGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp ETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 112357999999999 9999999999999999999999999998754
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=7e-37 Score=329.77 Aligned_cols=280 Identities=15% Similarity=0.195 Sum_probs=215.3
Q ss_pred HHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeeecccCcCCCCCee
Q 005394 32 MQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADID 111 (698)
Q Consensus 32 ~~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID 111 (698)
-++++|+.++.+. +.||++|.+.|++++.+|++++++.. ++++|++|||+.+|+++|+||||
T Consensus 5 ~~lt~EI~dFy~~--i~PT~eE~~~R~~vv~~l~~ii~~~~----------------p~~~v~~FGS~~tgl~lp~SDiD 66 (384)
T 3hj4_A 5 REFIRGMMAHYRA--SLPPPEHSVVIHELQKRVLDIGMLAV----------------NKAHVELFGSHVSGFCTPHSDAD 66 (384)
T ss_dssp HHHHHHHHHHHHH--HSCCTTHHHHHHHHHHHHHHHHHHHS----------------TTCEEEEESHHHHSCCCTTCCEE
T ss_pred hHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCcEEEEeeeccCCCCCCCCCee
Confidence 4678888888874 78999999999999999999998531 36999999999999999999999
Q ss_pred EEeecCCccC----chh---hHHHHHHHHHHh---ccCCceEEEeccCccceEEEEe--cCeeeeEEeeecccccccccc
Q 005394 112 ALCVGPSYVS----REE---DFFFILHNILAE---MEEVTELQPVLDAHVPVMKFKF--DGLSIDLLYASISRLVVREDL 179 (698)
Q Consensus 112 ~l~v~P~~v~----re~---~Ff~~l~~~L~~---~~~V~el~~I~~ArVPIIKf~~--~GI~iDLsfa~l~~~~vp~~l 179 (698)
+++..+.... .+. .....+.+ |++ ..+++.+. |.+||||||||.+ .|++|||+|++
T Consensus 67 lvI~~~~~~~~~~~~~~~~~~~~lrll~-L~k~~~~~~ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn---------- 134 (384)
T 3hj4_A 67 ISLTYRNFSPWLQGMERVDEQNNKRMTR-FGKEASAMGMEDVR-YIRARIPVVQFTDGVTGIHCDVSIGN---------- 134 (384)
T ss_dssp EEEECTTCCGGGTTCHHHHHHHHHHHHH-HHHHHHHHTCEEEE-EECSSSCEEEEECTTTCCEEEEEECC----------
T ss_pred EEEecCCCcccccccchhhHHHHHHHHH-HHhhcccCCeeEEe-ecCcccCEEEEEEcCCCeEEEEEecc----------
Confidence 9988765321 010 01111111 222 23666665 4599999999997 59999999986
Q ss_pred ccccccccCCCCcccccccchhhhHHHHHHhCCC-hhhHHHHHHHHHHHHHHhCCCCCccCccchHHHHHHHHHHHhhCC
Q 005394 180 DISDMSVLNDVDEPTVRSLNGCRVADQILKLVPN-VEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYP 258 (698)
Q Consensus 180 ~i~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVP~-~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQlyP 258 (698)
.+|++.+.+|..+... .++||+|+++||+||++|||++++.|+||||+|+|||++|||.+|
T Consensus 135 ------------------~~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~ 196 (384)
T 3hj4_A 135 ------------------IGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELG 196 (384)
T ss_dssp ------------------HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHT
T ss_pred ------------------cchHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcCC
Confidence 3678888888888777 557999999999999999999999999999999999999999742
Q ss_pred ---CC------------------------------------ChHHH----HHHHHHHhhcCCCCCceeec-ccccc-c--
Q 005394 259 ---NA------------------------------------VPSML----VSRFFRVYTMWRWPNPVMLC-AIDEA-E-- 291 (698)
Q Consensus 259 ---na------------------------------------s~~~L----L~~FF~~Ys~wdW~~pV~L~-~i~~g-~-- 291 (698)
+. ++++| |.+||+||+.|||.+-|+.. ++... .
T Consensus 197 vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~ 276 (384)
T 3hj4_A 197 LLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVY 276 (384)
T ss_dssp SSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHH
T ss_pred CCCccccccccCCcccccccHhhhhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCccccccc
Confidence 11 26777 99999999999999876543 32211 0
Q ss_pred ----------CC---cccccCC------C----------------CCCCCCCceEEeCCCCCCCCccCccCHhHHHHHHH
Q 005394 292 ----------LG---FSVWDPR------K----------------NRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMD 336 (698)
Q Consensus 292 ----------lg---~~~W~p~------~----------------~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~ 336 (698)
++ -+.|... . -.+..+.++.|+| +.-.+|+++.|+.+....|+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 355 (384)
T 3hj4_A 277 ERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQ 355 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHH
T ss_pred chhhhhhhhhccchhhhhhhhhhhccccCCCCCCCccccccCccccccccccceeeee-eccccccceecCccchhHHHH
Confidence 01 2455410 0 1233467899999 999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCccccccccc
Q 005394 337 QFQYGNTICEEVELNKAQWSALFEP 361 (698)
Q Consensus 337 EF~Ra~~Il~~i~~~~~~W~~Lf~p 361 (698)
||+||++|+.+-+ ++...+++|..
T Consensus 356 ~~~~~~~~~~~~~-~~~~~~~~~~~ 379 (384)
T 3hj4_A 356 EFNRLREMLIDKE-SELKFDEVFRE 379 (384)
T ss_dssp HHHHHHHHHTTTG-GGCCHHHHTCC
T ss_pred HHHHHHHHHhccc-ccccHHHHhhh
Confidence 9999999997633 23456666644
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-36 Score=331.47 Aligned_cols=250 Identities=16% Similarity=0.258 Sum_probs=194.8
Q ss_pred hhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeeecccCcCCCCCeeEE
Q 005394 34 RNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDAL 113 (698)
Q Consensus 34 ~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l 113 (698)
.++++.+++.. +-||++|.+.|..++.+|++++++. + ++++|++|||+.+|+++|+||||++
T Consensus 134 l~~EI~~f~~~--i~PT~eE~~~R~~vv~~le~ii~~~--------------f--P~a~V~~FGS~~tGL~lp~SDIDlv 195 (464)
T 3pq1_A 134 IDDQLNTLLKE--FQLTEENTKLRYLTCSLIEDMAAAY--------------F--PDCIVRPFGSSVNTFGKLGCDLDMF 195 (464)
T ss_dssp HHHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHTTT--------------S--TTCEEEEEGGGTSSCCBTTCCEEEE
T ss_pred HHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHH--------------C--CCCEEEEeCCCccCCCCCCCCeEEE
Confidence 45566666654 6799999999999999999999852 1 3699999999999999999999998
Q ss_pred eecCCccC--------------------ch----hhHHHHHHHHHHhc-cCCceEEEeccCccceEEEEec--CeeeeEE
Q 005394 114 CVGPSYVS--------------------RE----EDFFFILHNILAEM-EEVTELQPVLDAHVPVMKFKFD--GLSIDLL 166 (698)
Q Consensus 114 ~v~P~~v~--------------------re----~~Ff~~l~~~L~~~-~~V~el~~I~~ArVPIIKf~~~--GI~iDLs 166 (698)
+..+.... .+ ..++..+.+.|++. +++.+++.|.+||||||||.+. ||+|||+
T Consensus 196 l~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS 275 (464)
T 3pq1_A 196 LDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCALT 275 (464)
T ss_dssp EECC-----CCSCEECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEEE
T ss_pred EecCCcccccccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEEe
Confidence 76543210 00 13456667777764 6888999999999999999994 9999999
Q ss_pred eeeccccccccccccccccccCCCCcccccccchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCccCc-cchHH
Q 005394 167 YASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGF-LGGVN 245 (698)
Q Consensus 167 fa~l~~~~vp~~l~i~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~-LGG~s 245 (698)
|++ .+|++.+.+|..+...+++||+|+++||+||++|||++++.|+ ||||+
T Consensus 276 ~nn----------------------------~~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYs 327 (464)
T 3pq1_A 276 TNN----------------------------RIALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFS 327 (464)
T ss_dssp CSC----------------------------TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHH
T ss_pred cCC----------------------------CcHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHH
Confidence 986 3688999999999888999999999999999999999999997 99999
Q ss_pred HHHHHHHHHhhCC-----C------------------------------------CChHHHHHHHHHHhhcCCCCCceee
Q 005394 246 WALLVARVCQLYP-----N------------------------------------AVPSMLVSRFFRVYTMWRWPNPVML 284 (698)
Q Consensus 246 waLLVa~vcQlyP-----n------------------------------------as~~~LL~~FF~~Ys~wdW~~pV~L 284 (698)
|+|||++|+|... + .++++||..||+||++|||.+.|+.
T Consensus 328 L~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vIs 407 (464)
T 3pq1_A 328 LTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXXX 407 (464)
T ss_dssp HHHHHHHHHHSCC-------CCSHHHHTTC---------------------CCCCCCHHHHHHHHHHHGGGCCCCCCCCC
T ss_pred HHHHHHHHHHccCCCcCCChHHhccccCcccceeeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCcccccc
Confidence 9999999999752 1 1469999999999999999976552
Q ss_pred cccccccCCcccccCCCCCCCCCCceEEeCCCCCCCCccCccCHhHHHHHHHHHHHHHHHHHHhhh------cCcccc--
Q 005394 285 CAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVEL------NKAQWS-- 356 (698)
Q Consensus 285 ~~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~EF~Ra~~Il~~i~~------~~~~W~-- 356 (698)
| ..|++.||+...++.++.|+++|..||+.-.. .+.+|.
T Consensus 408 ---------------------------I------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~~~~~~~~~~~~~~wgl~ 454 (464)
T 3pq1_A 408 ---------------------------X------XXXXXXXVSQSQLQKFVDLARESAWILQQEDTDRPSISSNRPWGLV 454 (464)
T ss_dssp ---------------------------C------C-------CHHHHHHHHHHHHHHHHHHHCC-----------CCTTG
T ss_pred ---------------------------c------ccccccccCHHHHHHHHHHHHHHHHHHhhccccCcCCCCCCCcchH
Confidence 1 67999999999999999999999999985332 234574
Q ss_pred cccccc
Q 005394 357 ALFEPY 362 (698)
Q Consensus 357 ~Lf~p~ 362 (698)
.|+.|.
T Consensus 455 ~ll~~~ 460 (464)
T 3pq1_A 455 SLLLPS 460 (464)
T ss_dssp GGCC--
T ss_pred HHhccC
Confidence 566553
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.34 E-value=1.1e-10 Score=128.28 Aligned_cols=333 Identities=17% Similarity=0.174 Sum_probs=200.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeeecccCcCCC-CCeeEEee
Q 005394 37 ELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPG-ADIDALCV 115 (698)
Q Consensus 37 eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~-SDID~l~v 115 (698)
-+.++|.. +-|+++|.+.=..+.+.|...+++ + +.+++..|||+-|.++++ ||||+.++
T Consensus 6 ~~~~~l~~--i~P~~~E~~~~~~~~~~I~~~L~~-~-----------------~~~v~~~GS~AkgT~Lrg~sDIDIfv~ 65 (437)
T 1r89_A 6 ILEKALEL--VIPDEEEVRKGREAEEELRRRLDE-L-----------------GVEYVFVGSYARNTWLKGSLEIDVFLL 65 (437)
T ss_dssp HHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHH-H-----------------TCCEEEEHHHHHTCCCTTCCEEEEEEE
T ss_pred HHHHHHHh--hCCCHHHHHHHHHHHHHHHHHHHh-C-----------------CCeEEEeccccCCCcCCCCCCceEEEE
Confidence 35566654 679999998877888887777775 1 248899999999999987 89999999
Q ss_pred cCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecCeeeeEEeeeccccccccccccccccccCCCCcccc
Q 005394 116 GPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTV 195 (698)
Q Consensus 116 ~P~~v~re~~Ff~~l~~~L~~~~~V~el~~I~~ArVPIIKf~~~GI~iDLsfa~l~~~~vp~~l~i~~d~~L~~lDe~sv 195 (698)
.|....++ ++=..-..++++.- .+. .+.-|.-|-+...+.|+++|+.=|- ++.+..-+
T Consensus 66 f~~~~~~e-~l~~~~l~~~~e~l--~~~-~~~ya~hpyV~~~f~g~~vDVVP~y----------~v~~g~~~-------- 123 (437)
T 1r89_A 66 FPEEFSKE-ELRERGLEIGKAVL--DSY-EIRYAEHPYVHGVVKGVEVDVVPCY----------KLKEPKNI-------- 123 (437)
T ss_dssp ECTTSCHH-HHHHHHHHHHHHHS--SSE-EEEESSSEEEEEEETTEEEEEEEEE----------CCSSSSCC--------
T ss_pred cCCCCCHH-HHHHHHHHHHHHHH--HHh-hhhccCCceEEEEecceEEEEEEEE----------EccCCccc--------
Confidence 98776543 33222222333211 011 2456667888888899999998552 22211100
Q ss_pred cccch-h---hhHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCC--ccCccchHHHHHHHHHHHhhCCCCChHHHHHHH
Q 005394 196 RSLNG-C---RVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSN--VTGFLGGVNWALLVARVCQLYPNAVPSMLVSRF 269 (698)
Q Consensus 196 rSLNG-~---Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn--~~G~LGG~swaLLVa~vcQlyPnas~~~LL~~F 269 (698)
+ .+ . .-++++.+...+ ++..+|++|+|.|..|+|++ +.++++||.+=||++++ -+...+|..
T Consensus 124 ~--tavDrtp~H~~fv~~r~~~---~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y------G~f~~vl~~- 191 (437)
T 1r89_A 124 K--SAVDRTPFHHKWLEGRIKG---KENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY------GSFLETVKN- 191 (437)
T ss_dssp C--SHHHHHHHHHHHHTTTSTT---CHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH------SSHHHHHHH-
T ss_pred c--ccccCcHHHHHHHHhhhhh---hhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH------cCHHHHHHH-
Confidence 0 12 1 223444333322 88999999999999999987 46789999999999994 122333333
Q ss_pred HHHhhcCCCCCceeecccccccCCcccccCCCCCCCCCCceEEeCCCCCCCCccCccCHhHHHHHHHHHHHHHHHHHHhh
Q 005394 270 FRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVE 349 (698)
Q Consensus 270 F~~Ys~wdW~~pV~L~~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~EF~Ra~~Il~~i~ 349 (698)
.+ +|..++.+.- +.+ ... ...++.|+||.+|..|+|.++|..++..+..+-+... ..
T Consensus 192 ---~~--~w~~~~~Id~-~~~--------~~~----~~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l---~~-- 248 (437)
T 1r89_A 192 ---AR--RWTRRTVIDV-AKG--------EVR----KGEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFM---EA-- 248 (437)
T ss_dssp ---HT--TCCTTEEEEG-GGT--------EEE----ECSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHH---HS--
T ss_pred ---HH--HhCCCeEEec-CCC--------ccc----CCCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHH---hC--
Confidence 33 5655665532 100 000 1357899999999999999999988887776554322 22
Q ss_pred hcCcccccccccc--------chhh----hcccEEEEEEEeCChhhhhhhhhhhHhhHHHHHHHhhhcccCceeec-cCC
Q 005394 350 LNKAQWSALFEPY--------LFFE----SYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCH-PYP 416 (698)
Q Consensus 350 ~~~~~W~~Lf~p~--------~Ff~----~Yk~yl~I~v~a~~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~l~ah-p~P 416 (698)
.+ .++|.|. .+-. +=.+.+.|....++.-+= ..-|-++--.+.|...||+....++... .|
T Consensus 249 ---ps-~~~f~~~~~~~~~~~~~~~~~~~r~t~~~~~~f~~p~~~~D-~l~pQl~k~~~~i~~~L~~~gF~v~~~~~~~- 322 (437)
T 1r89_A 249 ---PS-LGFFKPKHPLEIEPERLRKIVEERGTAVFAVKFRKPDIVDD-NLYPQLERASRKIFEFLERENFMPLRSAFKA- 322 (437)
T ss_dssp ---CC-GGGGSCCCCCCCCHHHHHHHHHHHTCEEEEEEEECCSCCHH-HHHHHHHHHHHHHHHHHHHTTCCEEEEEEEE-
T ss_pred ---cc-HHhcCCCCccccCHHHHHHHHHhCCcEEEEEEECCCCCCcc-cchHHHHHHHHHHHHHHHHCCCEEEEecccc-
Confidence 11 2233221 1111 122456666655553222 3446777777788888888765555433 33
Q ss_pred CCCCCCCCCCceeEEEEeeeeCCCC--ccCCCceecchHHHHHHHH
Q 005394 417 HEYVDTSKPCAHCAFFMGLQRKPGE--VVQEGQQFDIRGSVEEFKL 460 (698)
Q Consensus 417 ~~f~~~~~~~~~~~ffIGL~~~~~~--~~~~~~~~dl~~~v~eF~~ 460 (698)
.+. .|..++=|...+-. ....|.++.-+.-.+.|.+
T Consensus 323 ---~~~-----~~~l~~e~~~~~lp~~~~~~GPpv~~~~~~~~F~~ 360 (437)
T 1r89_A 323 ---SEE-----FCYLLFECQIKEISRVFRRMGPQFEDERNVKKFLS 360 (437)
T ss_dssp ---CSS-----EEEEEEEESCSCCCSEEEEEEEETTCHHHHHHHHH
T ss_pred ---cCC-----eeEEEEEEcccccCCeeEeeCCCccchhhHHHHHH
Confidence 221 34444444322211 1112334544556778877
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.08 E-value=1.6e-08 Score=107.72 Aligned_cols=271 Identities=14% Similarity=0.136 Sum_probs=142.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeeecccCcCCC-CCeeEEe
Q 005394 36 RELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPG-ADIDALC 114 (698)
Q Consensus 36 ~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~-SDID~l~ 114 (698)
..|.+|+.+ .+-|+.++...=+.+++.|...+++-. .+ + .. .+..-.+++.+|||+-|.++++ ||||+++
T Consensus 9 ~~l~~fi~~-~l~p~~~~~~~i~~~~~~I~~~L~~~~----~~-~--~~-~~~~v~~v~~~GSyargT~lrg~sDiDlvV 79 (349)
T 1px5_A 9 RDLDKFIED-HLLPNTXFRTQVKEAIDIVXRFLKERC----FQ-G--TA-DPVRVSKVVKGGSSGKGTTLRGRSDADLVV 79 (349)
T ss_dssp GGHHHHHHH-HTSCCHHHHHHHHHHHHHHHHHHHHHT----TC-C------CCEEEEEEEEEEC--------CEEEEEEE
T ss_pred HHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhhh----cc-c--cc-CCcceEEEEEecCcCCCcccCCCCceeEEE
Confidence 357788863 578998888776677777777666421 11 1 00 0001147889999999999985 8999999
Q ss_pred ecCCccCch------hhHHHHHHHHHHhc---cCCc-eEEEe-ccCccc-eEEEEe------cCeeeeEEeeecccccc-
Q 005394 115 VGPSYVSRE------EDFFFILHNILAEM---EEVT-ELQPV-LDAHVP-VMKFKF------DGLSIDLLYASISRLVV- 175 (698)
Q Consensus 115 v~P~~v~re------~~Ff~~l~~~L~~~---~~V~-el~~I-~~ArVP-IIKf~~------~GI~iDLsfa~l~~~~v- 175 (698)
+.+...+.+ ..+...+.+.|.+. ..+. ..... ..-..| .+.|.+ .|++|||+-|--..-.+
T Consensus 80 ~l~~~~~~~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~~ 159 (349)
T 1px5_A 80 FLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWT 159 (349)
T ss_dssp EEESCSCTTHHHHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSCC
T ss_pred EECCCCchhhHHhhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhcccc
Confidence 887643332 13444455555531 1222 22211 011245 366665 57999988654321100
Q ss_pred ----ccccccccccccCC----CCcccccccchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCccCccchHHHH
Q 005394 176 ----REDLDISDMSVLND----VDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWA 247 (698)
Q Consensus 176 ----p~~l~i~~d~~L~~----lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swa 247 (698)
|+ -++..+ ++.. -+......-.-..-.+++.. ....|+.++|+||+|-++.+. ....+.+.||.+-
T Consensus 160 ~~~~~~-~~~y~~-li~~~~~~~~~g~~~~~~~~~h~~~v~~---~~~~~k~lIRLlK~W~~~~~~-~~~~~~~ssy~lE 233 (349)
T 1px5_A 160 PGYKPN-PEIYVQ-LIKECKSRGKEGEFSTCFTELQRDFLRN---RPTKLKSLIRLVKHWYQTCKK-THGNKLPPQYALE 233 (349)
T ss_dssp TTSCCC-HHHHHH-HHHHHHHHTCTTTTGGGGHHHHHHHHHS---SCHHHHHHHHHHHHHHHHHHT-TCSSCCCCHHHHH
T ss_pred cccCCC-hHHHHH-HHhhccccccCccchhcCHHHHHHHHHh---CcHHHHHHHHHHHHHHHHhhh-cccCCCCChHHHH
Confidence 00 000000 0000 00000000001111233332 246899999999999998864 2234678999999
Q ss_pred HHHHHHHhhCCCC---ChHHHHHHHHHHhhcCCCCCceeecccccccCCcccccCCCCCCC-----------CCCceEEe
Q 005394 248 LLVARVCQLYPNA---VPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRD-----------KTHHMPII 313 (698)
Q Consensus 248 LLVa~vcQlyPna---s~~~LL~~FF~~Ys~wdW~~pV~L~~i~~g~lg~~~W~p~~~~~d-----------r~~~MpIi 313 (698)
||+++.....+.. +...-+..||++-++|.- ..|. |..-.+..+ +...-.|+
T Consensus 234 LL~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~~-~~i~-------------w~~~y~~~~~~~~~fl~~~l~~~~p~I~ 299 (349)
T 1px5_A 234 LLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQK-LCIF-------------WEAYYDFTNPVVGRCMLQQLKKPRPVIL 299 (349)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGGG-CEEC-------------CCSSCCSSSHHHHHHHHHHHTSSSCEEB
T ss_pred HHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCc-ccee-------------eeccccccchhHHhhhhhhhcCCCCeee
Confidence 9999988766543 466778888888887631 1122 211000000 01123699
Q ss_pred CCCCCCCCccCccCHhHHHHHHH
Q 005394 314 TPAYPCMNSSYNVSTSTLRVMMD 336 (698)
Q Consensus 314 TP~~P~~Nsa~nVs~sTlrvI~~ 336 (698)
||++|..|++.. +......+..
T Consensus 300 DP~dp~~NVa~~-~~~~~~~~~~ 321 (349)
T 1px5_A 300 DPADPTGNVGGG-DTHSWQRLAQ 321 (349)
T ss_dssp CTTCTTCBTTCS-CHHHHHHHHH
T ss_pred CCCCCCCcccCC-chhhHHHHHH
Confidence 999999998877 7666666653
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=98.02 E-value=0.0012 Score=70.86 Aligned_cols=267 Identities=14% Similarity=0.061 Sum_probs=159.9
Q ss_pred CCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeeecccCcC
Q 005394 26 GPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHG 105 (698)
Q Consensus 26 ~Pt~~d~~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~ 105 (698)
.|.+.|-.+++.|++-= ..+.||++|...=..++.+++.++...+. ..|.-+ ..=..|...|||.-|+++
T Consensus 19 k~~~~d~~~~~~llkr~--~~l~Ps~eEq~~v~~lv~kI~~~ld~liv----~pg~~e----~~L~~V~rVGs~aKgtll 88 (364)
T 4at7_A 19 KPAPDETSFSEALLKRN--QDLAPNSAEQASILSLVTKINNVIDNLIV----APGTFE----VQIEEVRQVGSYKKGTMT 88 (364)
T ss_dssp SCCCCCHHHHHHHHHHH--HHHSCCHHHHHHHHHHHHHHHHHHHHHHH----CCTTCS----SCEEEEEEEHHHHHTCCC
T ss_pred CCCCChHHHHHHHHhcC--CccCCCHHHHHHHHHHHHHHHHHHHhhhc----CCCccc----cccceeEEeccccCCcee
Confidence 35556666766766543 35899999999888888888888887652 333211 012578899999999999
Q ss_pred CCC-CeeEEeecCCccCch--hhHHHHHHHHHHhccCCceEEE-eccCccceEEEEecCeeeeEEeeecccccccccccc
Q 005394 106 PGA-DIDALCVGPSYVSRE--EDFFFILHNILAEMEEVTELQP-VLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDI 181 (698)
Q Consensus 106 p~S-DID~l~v~P~~v~re--~~Ff~~l~~~L~~~~~V~el~~-I~~ArVPIIKf~~~GI~iDLsfa~l~~~~vp~~l~i 181 (698)
.|. |+|++|++-.-.+.+ +....++.+-|+....-..+.. +.+|.+=| + -.+-.+=+.+.. .|.++.-
T Consensus 89 ~G~~~~dlVvl~k~lPT~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~~I-~--~~~~~v~i~It~-----tsp~lrk 160 (364)
T 4at7_A 89 TGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEI-S--SSDATVKILITT-----VPPNLRK 160 (364)
T ss_dssp TTCCEEEEEEEESSCCBHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEEEE-E--CSSCEEEEEEEE-----CHHHHHT
T ss_pred cCCCceeEEEEecCCCCHHHHHHHHHHHHHHhhhhccccceeeccCcceEEE-e--cCCCcEEEEEEe-----CChhhcc
Confidence 987 899999997777653 1123444555554321111111 11111111 0 011111112111 1111111
Q ss_pred ccccccCCCCc-ccccccchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCccCccchHHHHHHHHHHHhhCC--
Q 005394 182 SDMSVLNDVDE-PTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYP-- 258 (698)
Q Consensus 182 ~~d~~L~~lDe-~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQlyP-- 258 (698)
. ++-..||. .|..+|-.+|-|.++...... ...+.++|++|.-.++.. .++.|.+|++-||+.+..-.-|
T Consensus 161 ~--dp~~~Ld~~~cl~aLaalRhAkWfq~na~~-s~v~~lIRIlkDlc~R~~----~w~pL~~waLELL~~~Ai~s~~~~ 233 (364)
T 4at7_A 161 L--DPELHLDIKVLQSALAAIRHARWFEENASQ-STVKVLIRLLKDLRIRFP----GFEPLTPWILDLLGHYAVMNNPTR 233 (364)
T ss_dssp C--CTTTBCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCG----GGTTCCHHHHHHHHHHHHHSSTTS
T ss_pred C--ChhHhcCHHHHHHHHHHhhhhHHHHhhccc-cccceeehhhHHHHHhcC----CcCCCCHHHHHHHHHHHHhcCCCC
Confidence 1 11122343 477888889999888877765 667889999999666542 2367888777777777766545
Q ss_pred -CCChHHHHHHHHHHhhc-CCCCCceeecccccccCCcccccCCCCCCCCCCceEEeCCCCC-CCCccCccCHhHHHHHH
Q 005394 259 -NAVPSMLVSRFFRVYTM-WRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYP-CMNSSYNVSTSTLRVMM 335 (698)
Q Consensus 259 -nas~~~LL~~FF~~Ys~-wdW~~pV~L~~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~P-~~Nsa~nVs~sTlrvI~ 335 (698)
..+++.-+.++|+..+. +-.|.-. -|.||+.+ ..+...+.+......|.
T Consensus 234 ~~l~~~~afRRVLElLAsGillp~~~----------------------------Gi~DPCE~~~~~v~~~lt~qq~e~it 285 (364)
T 4at7_A 234 QPLALNVAYRRCLQILAAGLFLPGSV----------------------------GITDPCESGNFRVHTVMTLEQQDMVC 285 (364)
T ss_dssp SCCCHHHHHHHHHHHHHTTTTSTTBC----------------------------CCBCTTSSSCCBGGGGSCHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCcccCCCC----------------------------CCcCCCCCCCcchhccCCHHHHHHHH
Confidence 46799999999999884 4333211 13455555 34555566665566666
Q ss_pred HHHHHHHHHH
Q 005394 336 DQFQYGNTIC 345 (698)
Q Consensus 336 ~EF~Ra~~Il 345 (698)
.--|.+.+++
T Consensus 286 ~sAQ~~LRll 295 (364)
T 4at7_A 286 YTAQTLVRIL 295 (364)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 13
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=97.24 E-value=0.019 Score=62.13 Aligned_cols=262 Identities=18% Similarity=0.189 Sum_probs=154.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCCC---c-------c---------c---cccCCeEEEEeeee
Q 005394 45 AGLYESKEEDEKREQVLGRIRQIAK---DWVKELTRLRGYS---D-------Q---------M---VEDANALIFTFGSY 99 (698)
Q Consensus 45 ~~l~pS~EE~~~R~~VL~~L~~iv~---~wv~~v~~~~g~~---~-------~---------~---~~~~~~~I~~FGSy 99 (698)
..+||++||.+.=+.++..++..+| +|+.+..+..+-. + . . ....=.-|.-.|+|
T Consensus 21 ~~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG~l 100 (383)
T 4at7_B 21 SSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGLV 100 (383)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEecee
Confidence 3589999999999999999888776 6664422111100 0 0 0 00011335669999
Q ss_pred cccCcCCC-CCeeEEeecCCccCchhhHHHHHHHHHHh-ccCCc----eE-EEeccCccceEEEEecCeeeeEEeeeccc
Q 005394 100 RLGVHGPG-ADIDALCVGPSYVSREEDFFFILHNILAE-MEEVT----EL-QPVLDAHVPVMKFKFDGLSIDLLYASISR 172 (698)
Q Consensus 100 ~lGv~~p~-SDID~l~v~P~~v~re~~Ff~~l~~~L~~-~~~V~----el-~~I~~ArVPIIKf~~~GI~iDLsfa~l~~ 172 (698)
.-|+.+.| -+.|+|+++..-.++ .+...+.+.|.+ +..++ ++ ..+.+|.+=|-.-....+.|=|++.+.
T Consensus 101 aKGlLLkGd~~veLVvlck~kPT~--~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~i~i~~~~~p~~~v~I~lTSp-- 176 (383)
T 4at7_B 101 AKGLLLKGDLDLELVLLCKEKPTT--ALLDKVADNLAIQLTTVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSP-- 176 (383)
T ss_dssp HHTCCCTTCCEEEEEEEESSCCBH--HHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTEEEEECSSSSCCEEEEEEECH--
T ss_pred cccceECCCCceeEEEEeCCCCcH--HHHHHHHHHHHHHHhhccCCceEEeecCCcceEEEecCCCCCeEEEEEECCc--
Confidence 99999975 489999999888775 466655555442 12221 12 233444322211111134555555442
Q ss_pred ccccccc-------ccccccccCCCC-cccccccchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCccCccchH
Q 005394 173 LVVREDL-------DISDMSVLNDVD-EPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGV 244 (698)
Q Consensus 173 ~~vp~~l-------~i~~d~~L~~lD-e~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~ 244 (698)
.+++++ .+...+.-..|| ..|+.+|-.+|-|.++.+..........++|++|.-.++.- .++-|.+|
T Consensus 177 -~~re~~~~~~~~~~~~~~dp~d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~----~~~pL~~w 251 (383)
T 4at7_B 177 -VVREEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVP----TWGPLRGW 251 (383)
T ss_dssp -HHHHHHHHHHTTCCCCCCCCTTBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCG----GGGGGTTH
T ss_pred -ccccchhhcccccccccCChhhcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcC----CcCCCcHh
Confidence 112111 000001111234 24888888888887777666666677889999999666652 23568888
Q ss_pred HHHHHHHHHHhh-CCCCChHHHHHHHHHHhhcC-CCCC-ceeecccccccCCcccccCCCCCCCCCCceEEeCCCC--CC
Q 005394 245 NWALLVARVCQL-YPNAVPSMLVSRFFRVYTMW-RWPN-PVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAY--PC 319 (698)
Q Consensus 245 swaLLVa~vcQl-yPnas~~~LL~~FF~~Ys~w-dW~~-pV~L~~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~--P~ 319 (698)
++-||+.+..-. ..+.+++.-+.+||+..+.. --|. |+ |.||+. |.
T Consensus 252 aLELL~~~ai~s~~~~l~~~~afRRVLEllasG~lLp~~pg-----------------------------I~DPcEk~pt 302 (383)
T 4at7_B 252 PLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSG-----------------------------IYDPCEKEAT 302 (383)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTTTSTTSCC-----------------------------CBCTTCSSCC
T ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCcccCCCCC-----------------------------ccCCCCCCCc
Confidence 888888777653 12357899999999998863 2221 22 456666 65
Q ss_pred CCccCccCHhHHHHHHHHHHHHHHHH
Q 005394 320 MNSSYNVSTSTLRVMMDQFQYGNTIC 345 (698)
Q Consensus 320 ~Nsa~nVs~sTlrvI~~EF~Ra~~Il 345 (698)
.|.+ ..+......|..+-+.+.+++
T Consensus 303 ~~~~-~lt~qq~e~it~sAQ~~LR~~ 327 (383)
T 4at7_B 303 DAIG-HLDRQQREDITQSAQHALRLA 327 (383)
T ss_dssp BTTT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred cccc-cCCHHHHHHHHHHHHHHHHHH
Confidence 5555 556666777777766666554
No 14
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.19 E-value=0.0013 Score=59.15 Aligned_cols=44 Identities=18% Similarity=0.124 Sum_probs=32.4
Q ss_pred eEEEEeeeecccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHh
Q 005394 91 ALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAE 136 (698)
Q Consensus 91 ~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~ 136 (698)
..++.|||++-|-+.++||||++++.+..... ..+..+...|.+
T Consensus 28 ~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~~~--~~~~~l~~~l~~ 71 (114)
T 1no5_A 28 YTVWAFGSRVKGKAKKYSDLDLAIISEEPLDF--LARDRLKEAFSE 71 (114)
T ss_dssp SEEEEEGGGTTTCCCTTCCEEEEEECSSCCCH--HHHHHHHHHHHH
T ss_pred CEEEEEeccCCCCCCCCCCeEEEEEeCCCCCH--HHHHHHHHHHHh
Confidence 58999999999999999999999988754332 112334455554
No 15
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=96.91 E-value=0.0018 Score=58.42 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeeecccCcCCCCCeeEEeecCCc
Q 005394 55 EKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSY 119 (698)
Q Consensus 55 ~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~ 119 (698)
..+.++++.|++++....++ ++ .-..++.|||++-|-+.++||||++++.+..
T Consensus 10 ~~~~~i~~~l~~~~~~l~~~------~~------~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~ 62 (111)
T 2rff_A 10 ESQIRMLKLAKEIVEEVASS------FP------NLEEVYIFGSRARGDYLDTSDIDILFVFKGI 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------CT------TEEEEEEESHHHHSCCCTTCCEEEEEEESSC
T ss_pred cCHHHHHHHHHHHHHHHHHH------cC------CccEEEEEeeeecCCCCCCCCEEEEEEecCC
Confidence 45677888888877765421 11 1267999999999999999999999987654
No 16
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=96.90 E-value=0.0014 Score=57.54 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeeecccCcCCCCCeeEEeecCCc
Q 005394 59 QVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSY 119 (698)
Q Consensus 59 ~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~ 119 (698)
++++.+++.+....++ .| -..++.|||++-|-+.++||||++++.+..
T Consensus 7 ~~l~~l~~~i~~l~~~----~~---------v~~v~LFGS~arG~~~~~SDiDl~V~~~~~ 54 (98)
T 1wot_A 7 ETLRARREAVLSLCAR----HG---------AVRVRVFGSVARGEAREDSDLDLLVAFEEG 54 (98)
T ss_dssp HHHHHHHHHHHHHHHH----HT---------CSSCEECSHHHHTCCCTTCCCEEEECCCSS
T ss_pred HHHHHHHHHHHHHHHH----cC---------CcEEEEEccccCCCCCCCCCEEEEEEeCCC
Confidence 6666766666654432 22 256999999999999999999999877643
No 17
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=96.69 E-value=0.0038 Score=54.54 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=26.3
Q ss_pred eEEEEeeeecccCcCCC-CCeeEEeecCC
Q 005394 91 ALIFTFGSYRLGVHGPG-ADIDALCVGPS 118 (698)
Q Consensus 91 ~~I~~FGSy~lGv~~p~-SDID~l~v~P~ 118 (698)
..++.|||++-|-+.++ ||||++++.+.
T Consensus 18 ~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 18 AEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp CEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred cEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 78999999999999999 99999998875
No 18
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=94.66 E-value=0.027 Score=58.06 Aligned_cols=54 Identities=22% Similarity=0.153 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeeecccCcCCCCCeeEEeecCC
Q 005394 53 EDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPS 118 (698)
Q Consensus 53 E~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~ 118 (698)
|.-.|+.+.+.|+++++...+. .+ .-.+|+.||||+-|-+.++||||++++...
T Consensus 15 ~~~~~q~Vq~eL~~ive~L~~~----~~--------~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 15 ENLYFQGVQHTIARWVDRLREE----YA--------DAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH----CT--------TEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred hccChHHHHHHHHHHHHHHHHh----cC--------CceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 3445666666666666554321 11 026799999999999999999999998754
No 19
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=94.18 E-value=0.046 Score=55.50 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=26.1
Q ss_pred eEEEEeeeecccCcCCCCCeeEEeecCCc
Q 005394 91 ALIFTFGSYRLGVHGPGADIDALCVGPSY 119 (698)
Q Consensus 91 ~~I~~FGSy~lGv~~p~SDID~l~v~P~~ 119 (698)
..|+.|||++-|-..++||||++++....
T Consensus 32 ~~~~lfGS~arg~~~~~SDiD~~v~~~~~ 60 (253)
T 1kny_A 32 KAIGVYGSLGRQTDGPYSDIEMMCVMSTE 60 (253)
T ss_dssp EEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred eEEEEEccccCCCCCCCCCeeEEEEecCc
Confidence 67999999999999999999999887654
No 20
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=93.78 E-value=0.4 Score=50.96 Aligned_cols=117 Identities=16% Similarity=0.219 Sum_probs=77.3
Q ss_pred CCeEEEEeeeecccCcCCCCCeeEEeecCCccCch---hhHHHHHHHHHHhccCCceEEEeccCccceE-EEEe------
Q 005394 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVSRE---EDFFFILHNILAEMEEVTELQPVLDAHVPVM-KFKF------ 158 (698)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re---~~Ff~~l~~~L~~~~~V~el~~I~~ArVPII-Kf~~------ 158 (698)
...++..-||||=|-.+ ..|||+++..|...... ..++..+.+.|.+.+.++++......+.-++ ++..
T Consensus 171 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g~~k~~~v~~l~~~~~~~~ 249 (335)
T 2fmp_A 171 SEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKE 249 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSEEEEEECCCCCTTCCC
T ss_pred CCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecCCceEEEEEEeCCcccccC
Confidence 35899999999998777 56999999888432211 2578889999999888887666666654433 3332
Q ss_pred -cCeeeeEEeeeccccccccccccccccccCCCCcccccccchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCc
Q 005394 159 -DGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNV 237 (698)
Q Consensus 159 -~GI~iDLsfa~l~~~~vp~~l~i~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~ 237 (698)
.++.|||.++.... . .-.++-+-.+ ..| .|-++.||+++|+.=|-
T Consensus 250 ~~~~rVDl~~vp~~~------~------------------------~~aLl~fTGS-~~f---nr~lR~~A~~kG~kl~e 295 (335)
T 2fmp_A 250 YPHRRIDIRLIPKDQ------Y------------------------YCGVLYFTGS-DIF---NKNMRAHALEKGFTINE 295 (335)
T ss_dssp CCCEEEEEEECCGGG------H------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTEEECS
T ss_pred CCceEEEEEEECHHH------H------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCcccc
Confidence 28999999875321 0 1122222222 223 37788999999886666
Q ss_pred cCc
Q 005394 238 TGF 240 (698)
Q Consensus 238 ~G~ 240 (698)
+|.
T Consensus 296 ~Gl 298 (335)
T 2fmp_A 296 YTI 298 (335)
T ss_dssp SCE
T ss_pred ccc
Confidence 664
No 21
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=92.50 E-value=0.5 Score=50.24 Aligned_cols=116 Identities=22% Similarity=0.261 Sum_probs=74.8
Q ss_pred CCeEEEEeeeecccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEec-----cCcc-ceEEEEe---c
Q 005394 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVL-----DAHV-PVMKFKF---D 159 (698)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~V~el~~I~-----~ArV-PIIKf~~---~ 159 (698)
....+..-||||=|-.+ ..|||+++..|..... ..++..+.+.|.+.+.+++.-... ..+. =|.++.. .
T Consensus 168 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~-~~ll~~v~~~l~~~~~i~~~l~~~~~~g~~~k~~~v~~l~~~~~~ 245 (335)
T 2bcq_A 168 SGLLCVACGSYRRGKAT-CGDVDVLITHPDGRSH-RGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRR 245 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTSSTT-TTCHHHHHHHHHHTTCEEEEEECCTTSTTCCEEEEEECCSSTTCC
T ss_pred CCcEEEEccccccCCCC-CCCeEEEEecCCchhh-hhHHHHHHHHHHhCCchHHHhhccccCCCCceEEEEEEccCCCCC
Confidence 35789999999998877 5699999988876543 367888899999888877644331 1122 1112221 6
Q ss_pred CeeeeEEeeeccccccccccccccccccCCCCcccccccchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCccC
Q 005394 160 GLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTG 239 (698)
Q Consensus 160 GI~iDLsfa~l~~~~vp~~l~i~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G 239 (698)
|+.|||.++.... + .-.++-+-.+ ..| -|.++.||+++|+.=|-+|
T Consensus 246 ~~rVDl~~vp~~~--~----------------------------g~ALl~fTGS-~~f---nr~lR~~A~~~G~kL~e~G 291 (335)
T 2bcq_A 246 HRRLDIIVVPYSE--F----------------------------ACALLYFTGS-AHF---NRSMRALAKTKGMSLSEHA 291 (335)
T ss_dssp CEEEEEEECCGGG--H----------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTCEECSSC
T ss_pred ceEEEEEEECHHH--H----------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCCccccc
Confidence 7899999875321 0 1122222222 222 3788999999988666666
Q ss_pred c
Q 005394 240 F 240 (698)
Q Consensus 240 ~ 240 (698)
.
T Consensus 292 l 292 (335)
T 2bcq_A 292 L 292 (335)
T ss_dssp E
T ss_pred c
Confidence 4
No 22
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=89.38 E-value=0.84 Score=47.68 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=57.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeeecccCcCCCCCeeEEeecCCccCchh
Q 005394 45 AGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREE 124 (698)
Q Consensus 45 ~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~ 124 (698)
.|+.|----++..++++++|.+.+++- .--..|..+||+..|-...-||||+++++..... +
T Consensus 12 ~~~~~~~~~m~~~~e~l~~I~~~~~~d----------------~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~~~~--~ 73 (287)
T 3jz0_A 12 SGLVPRGSHMLKQKELIANVKNLTESD----------------ERITACMMYGSFTKGEGDQYSDIEFYIFLKHSIT--S 73 (287)
T ss_dssp ----------CHHHHHHHHHHHHHHHC----------------TTEEEEEECSGGGTTCCCTTCCEEEEEEECGGGT--T
T ss_pred cCcCCCCCCccCHHHHHHHHHHHHhcC----------------CCEEEEEEECCccCCCCCCccceeEEEEEcCcch--h
Confidence 356665555666777777777776531 1125689999999999999999999997744211 1
Q ss_pred hHHHHHHHHHHhccCCceEEEeccCccceEEEEe-cCeeeeEEeeeccc
Q 005394 125 DFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF-DGLSIDLLYASISR 172 (698)
Q Consensus 125 ~Ff~~l~~~L~~~~~V~el~~I~~ArVPIIKf~~-~GI~iDLsfa~l~~ 172 (698)
.| .. ..-|.....+- -..++.++- .++.| +|+.|||.|..+..
T Consensus 74 ~f-~~-~~Wl~~fG~~~--~~f~~~~~~-~l~lF~Dg~riDl~l~~~~~ 117 (287)
T 3jz0_A 74 NF-DS-SNWLFDVAPYL--MLYKNEYGT-EVVIFDNLIRGEFHFLSEKD 117 (287)
T ss_dssp TC-CH-HHHHHHHCCEE--EEEECTTSC-EEEEETTSCEEEEEEEEGGG
T ss_pred hh-hh-HHHHHHhhhhh--eEeecccce-EEEEecCCcEEEEEEeeHHH
Confidence 22 11 23333322211 112222332 23444 79999999998653
No 23
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=88.75 E-value=0.63 Score=45.30 Aligned_cols=114 Identities=17% Similarity=0.233 Sum_probs=72.9
Q ss_pred ccccccCCeEEEEeeeecccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHh--ccCCc-eEEEeccCccceEEEEe-
Q 005394 83 DQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAE--MEEVT-ELQPVLDAHVPVMKFKF- 158 (698)
Q Consensus 83 ~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~--~~~V~-el~~I~~ArVPIIKf~~- 158 (698)
.+..+.+++++..-||||=|-.+-+ |||+++..|.. ..+.+.|.+ .+.++ ++..-.+.++-+ ++..
T Consensus 24 ~~~ik~~g~~v~iaGS~RRgket~g-DiDiLit~~~~--------~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~~~ 93 (174)
T 1jaj_A 24 GQLIKILSKNIVAVGSLRREEKMLN-DVDLLIIVPEK--------KLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIEWE 93 (174)
T ss_dssp TEEEEECTTTEEEEEHHHHTCSEEC-CEEEEEEESSH--------HHHHTSSSEEEESSCEEEEEEETTTEEEE-EEESS
T ss_pred cccccCCCcEEEEeccccCCCCCCC-CEEEEEecCCH--------HHHHHHHHhccCCceeHhHeecCCCeEEE-EeCCC
Confidence 3444456789999999999987754 99999887652 235566777 77777 665444555333 3433
Q ss_pred -cCeeeeEEeeeccccccccccccccccccCCCCcccccccchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCc
Q 005394 159 -DGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNV 237 (698)
Q Consensus 159 -~GI~iDLsfa~l~~~~vp~~l~i~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~ 237 (698)
.|+.|||.++.... . .-.++-+-.+ +.| .+.++.||+++|+.=|-
T Consensus 94 ~~~~rVDl~~vp~~~------f------------------------g~ALl~fTGS-k~h---n~~lR~~A~~kG~~L~e 139 (174)
T 1jaj_A 94 KKTYQLDLFTALAEE------K------------------------PYAIFHFTGP-VSY---LIRIRAALKKKNYKLNQ 139 (174)
T ss_dssp SCCEEEEEEEEETTC------H------------------------HHHHHHHHSC-HHH---HHHHHHHHHHTTEEEET
T ss_pred CCceEEEEEEeCHHH------H------------------------HHHHHHhHCC-HHH---HHHHHHHHHHcCCCcCc
Confidence 68999999876321 0 1122222222 222 37778999999886666
Q ss_pred cCc
Q 005394 238 TGF 240 (698)
Q Consensus 238 ~G~ 240 (698)
+|.
T Consensus 140 ~Gl 142 (174)
T 1jaj_A 140 YGL 142 (174)
T ss_dssp TEE
T ss_pred ccc
Confidence 664
No 24
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=88.03 E-value=1.8 Score=46.33 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=41.2
Q ss_pred CCeEEEEeeeecccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCc
Q 005394 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVT 141 (698)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~V~ 141 (698)
...++..-||||=|-.+ ..|||+|+..|..... ..++..+.+.|.+.+.|+
T Consensus 175 ~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~-~~ll~~v~~~L~~~~~i~ 225 (360)
T 2ihm_A 175 PGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQE-VGLLPKVMSCLQSQGLVL 225 (360)
T ss_dssp TTCEEEECHHHHTTCSE-ESEEEEEEECSSTTTT-TTHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEccccccCCCc-cCCeEEEEecCChhhh-hhHHHHHHHHHHhCCCee
Confidence 46899999999999877 5699999988876433 368888999999877765
No 25
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=84.26 E-value=6.1 Score=42.70 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=38.8
Q ss_pred CCeEEEEeeeecccCcCCCCCeeEEeecCCccCch-hhHHHHHHHHHHhccCCc
Q 005394 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVSRE-EDFFFILHNILAEMEEVT 141 (698)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re-~~Ff~~l~~~L~~~~~V~ 141 (698)
...++..-||||=|--+ ..|||+|+..|...... ..++..+.+.|.+.+.|+
T Consensus 195 ~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i~ 247 (381)
T 1jms_A 195 PDALVTMTGGFRRGKMT-GHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLL 247 (381)
T ss_dssp TTCEEEECHHHHTTCSC-BSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEccccccCCCC-cCCeEEEEeCCCccccchhhHHHHHHHHHHhCCCcc
Confidence 46799999999999877 45999999887653211 126778888888877663
No 26
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=82.43 E-value=3.7 Score=46.36 Aligned_cols=107 Identities=17% Similarity=0.095 Sum_probs=70.2
Q ss_pred CeEEEEeeeecccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecCeeeeEEeee
Q 005394 90 NALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYAS 169 (698)
Q Consensus 90 ~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~V~el~~I~~ArVPIIKf~~~GI~iDLsfa~ 169 (698)
..++..-||||=|-.+- .|||+++..|... .+.+.|.+.+.|.++..-...++-+ ++ -.|+.|||.++.
T Consensus 180 ~~~~~~~Gs~RRgke~~-gDiD~li~~~~~~--------~v~~~l~~~~~~~~~~~~g~~k~~~-~~-~~~~rvDl~~~~ 248 (575)
T 3b0x_A 180 VERAELCGSARRYKDTV-GDLDFLVASREGE--------RAVEGFVRLPQVKEVYAKGKERATV-FL-KNGLQVDLRVVP 248 (575)
T ss_dssp CCEEEECHHHHTTCSEE-SSEEEEEECSSHH--------HHHHHHHTSTTEEEEEEECSSEEEE-EE-TTSCEEEEEEEC
T ss_pred CcEEEEccccccCCCcc-CCeEEEEeCCCHH--------HHHHHHHhCcchhhHhhcCCCceEE-Ec-cCCcEEEEEEEC
Confidence 57899999999888764 5999998887531 3566777788877655444544333 11 269999999876
Q ss_pred ccccccccccccccccccCCCCcccccccchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCccCcc
Q 005394 170 ISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFL 241 (698)
Q Consensus 170 l~~~~vp~~l~i~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~L 241 (698)
... + .-.++-+-.+. .| .|.++.||+++|+-=|-+|..
T Consensus 249 ~~~--~----------------------------~~al~~~TGs~-~~---n~~lR~~A~~~g~~l~~~gl~ 286 (575)
T 3b0x_A 249 PES--Y----------------------------GAGLQYLTGSA-AH---SIRLRALAQEKGLKLSEYGVF 286 (575)
T ss_dssp GGG--H----------------------------HHHHHHHHCCH-HH---HHHHHHHHHHTTCEEETTEEE
T ss_pred HHH--H----------------------------HHHHHHhhCCH-HH---HHHHHHHHHHcCCCcchhhcc
Confidence 321 0 11222222222 22 378899999999877777754
No 27
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=70.89 E-value=7 Score=42.85 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=36.6
Q ss_pred CCeEEEEeeeecccCcCCCCCeeEEeecCCc-cC-------chhhHHHHHHHHHHh
Q 005394 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSY-VS-------REEDFFFILHNILAE 136 (698)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~-v~-------re~~Ff~~l~~~L~~ 136 (698)
.+.-|..+|||.=|=-.++||||++++.+.. .+ ....||..+.+.+.+
T Consensus 153 ~~~aviamGk~Gr~EL~~~SDiDli~l~~~~~~~~~~~~~~~~~~~f~rla~~l~~ 208 (440)
T 1v4a_A 153 QPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIK 208 (440)
T ss_dssp CCCEEEECHHHHTTCCCSSCCEEEEEEECC--------CCSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccccccCcCCCCCcceEEEeCCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 4688999999999999999999999987633 11 113688888877665
No 28
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=60.53 E-value=25 Score=33.58 Aligned_cols=88 Identities=17% Similarity=0.219 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeeeecc---cCcCCCCCeeEEeecCCccCchhhHHHHHHHH
Q 005394 57 REQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRL---GVHGPGADIDALCVGPSYVSREEDFFFILHNI 133 (698)
Q Consensus 57 R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~l---Gv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~ 133 (698)
|+++..-|+.+...+ ...+..-...|||++ |+-.+.-|||+++ .+ .=...+.++
T Consensus 15 ~~~~~~~L~~i~~~L---------------~~~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i-~~-------~da~~~~~~ 71 (169)
T 2fcl_A 15 RPEYLRVLRXIYDRL---------------XNEXVNWVVTGSLSFALQGVPVEVHDIDIQT-DE-------EGAYEIERI 71 (169)
T ss_dssp CHHHHHHHHHHHHHH---------------TTSSCCEEEEHHHHHHHTTCCCCCCSEEEEE-CH-------HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH---------------HhcCCCEEEeHHHHHHHcCCCCCCCccEEEe-cc-------cCHHHHHHH
Confidence 555555666555543 234677788899987 5555788999977 21 223456677
Q ss_pred HHhccCCceEEEeccCcc--ceEEEEecCeeeeEEee
Q 005394 134 LAEMEEVTELQPVLDAHV--PVMKFKFDGLSIDLLYA 168 (698)
Q Consensus 134 L~~~~~V~el~~I~~ArV--PIIKf~~~GI~iDLsfa 168 (698)
|.+.. ......-++... -...+.+.|+.|||...
T Consensus 72 L~~~g-~~~~~~~~~~~~~~~f~~~~i~~v~VDlm~~ 107 (169)
T 2fcl_A 72 FSEFV-SXXVRFSSTEXICSHFGELIIDGIXVEIMGD 107 (169)
T ss_dssp TGGGE-EEEEEEEECSSEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHh-hcccCCCccccccceeeEEeeCCEEEEeeec
Confidence 77531 111211122221 14456678999999964
No 29
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=59.26 E-value=20 Score=40.01 Aligned_cols=61 Identities=13% Similarity=0.209 Sum_probs=42.2
Q ss_pred HhhcCCCccc--cccCCeEEEEeeeecccCcCCCCCeeEEeecCCccC---------chhhHHHHHHHHHHh
Q 005394 76 TRLRGYSDQM--VEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVS---------REEDFFFILHNILAE 136 (698)
Q Consensus 76 ~~~~g~~~~~--~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~---------re~~Ff~~l~~~L~~ 136 (698)
+...|.+... ....+.-|.-+|++.=+=-.++||||++++.+.... ....||..+.+.+.+
T Consensus 218 ~~~~G~p~~~~~~~~~~~aviamGklGg~EL~~~SDiDlifv~~~~~~~~t~g~~~~~~~~~f~rlaq~li~ 289 (498)
T 3k7d_A 218 VARYGKPNHLNEREGRGFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMH 289 (498)
T ss_dssp HHHHCCBGGGTTCSSCSEEEEEEHHHHTTCCCTTCCEEEEEEECCCTTCBBSSSSCCBHHHHHHHHHHHHHH
T ss_pred HHHcCCCcccccCCCCCEEEEeeccccccccCcccccceeeeecCcccccccccccchHHHHHHHHHHHHHH
Confidence 3445765211 123468999999999999999999999998764311 013688888776664
No 30
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=54.26 E-value=17 Score=37.62 Aligned_cols=78 Identities=21% Similarity=0.069 Sum_probs=35.7
Q ss_pred eEEEEeeeecccC--cCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEecc-------C-ccceEEEEe-c
Q 005394 91 ALIFTFGSYRLGV--HGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLD-------A-HVPVMKFKF-D 159 (698)
Q Consensus 91 ~~I~~FGSy~lGv--~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~V~el~~I~~-------A-rVPIIKf~~-~ 159 (698)
--|+..||+..+- .-.-||+|+++++... ..|... ...|.+...+-.++.-.+ . .-|..-+.+ +
T Consensus 24 ~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d~----~~~~~~-~~wl~~fg~~l~~~~~e~~~~~~~~~~~~~~~l~lf~d 98 (294)
T 2pbe_A 24 RLVTLEGSRTNRNIPPDNFQDYDISYFVTDV----ESFKEN-DQWLEIFGKRIMMQKPEDMELFPPELGNWFSYIILFED 98 (294)
T ss_dssp EEEEEC------------CCCEEEEEEESCH----HHHHTC-SGGGGGGCCEEEEECTTSCSSSCCCSTTCEEEEEEETT
T ss_pred EEEEEecCCCCCCCCCCCcccceEEEEEcCc----hHhhhh-HHHHHHHhhHHhhccccccccCcccCCCceeEEEEecC
Confidence 4578889999855 7889999999988532 123221 112222222111111000 1 123333444 7
Q ss_pred CeeeeEEeeecccc
Q 005394 160 GLSIDLLYASISRL 173 (698)
Q Consensus 160 GI~iDLsfa~l~~~ 173 (698)
|+.|||.|..+...
T Consensus 99 g~rIDl~~~~~~~l 112 (294)
T 2pbe_A 99 GNKLDLTLIPIREA 112 (294)
T ss_dssp SCEEEEEEEEGGGH
T ss_pred CcEEEEEEecHHHH
Confidence 99999999987543
No 31
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=44.47 E-value=30 Score=39.07 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=57.8
Q ss_pred EEEeeeecccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecCeeeeEEeeeccc
Q 005394 93 IFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISR 172 (698)
Q Consensus 93 I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~V~el~~I~~ArVPIIKf~~~GI~iDLsfa~l~~ 172 (698)
+..-||||=|-.+-+ |||+++.. . . ... |.+.+.|+ .-.+.++-+ ++ .|+.|||.++....
T Consensus 182 ~~~~Gs~RR~~e~~g-DiD~li~~-~---~-~~v-------l~~~~~v~---~~g~~k~~~-~~--~~~~vDl~~~~~~~ 242 (578)
T 2w9m_A 182 PAPAGDVRRGLETVR-AAELTVTG-T---P-DDV-------LARLPELT---VQGDGVLSG-DY--EGVPVEIACAPAEA 242 (578)
T ss_dssp CEECHHHHHTCSEES-SEEEEEES-C---H-HHH-------HHHCTTCE---EC---CEEE-EE--TTEEEEEEEECTTT
T ss_pred CEEecccccCCCccC-CEEEEEec-C---h-HHH-------HhcCccce---ecCCceEEE-EE--CCEEEEEEEECHHH
Confidence 888999999887754 99998876 2 1 111 66667765 222333322 23 89999999876321
Q ss_pred cccccccccccccccCCCCcccccccchhhhHHHHHHhCCChhhHHHHH-HHHHHHHHHhCCCCCccCcc
Q 005394 173 LVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTL-RCLKFWAKRRGVYSNVTGFL 241 (698)
Q Consensus 173 ~~vp~~l~i~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVP~~~~FR~ll-r~IK~WAK~RGIysn~~G~L 241 (698)
. .-.++-+- . . -. |.++.||++||+.=|-+|..
T Consensus 243 ------~------------------------~~al~~~T-G-~----~n~~~lr~~A~~~g~~l~~~gl~ 276 (578)
T 2w9m_A 243 ------R------------------------GALDLLRS-G-E----HFAGQVQAAAQARGFTLTAGGLS 276 (578)
T ss_dssp ------H------------------------HHHHHHTS-C-H----HHHHHHHHHHHTTTCEEETTEEE
T ss_pred ------H------------------------HHHHHHHh-h-h----hHHHHHHHHHHHcCCCcChhhcc
Confidence 0 11222222 2 2 23 77899999999877777754
Done!