Query 005395
Match_columns 698
No_of_seqs 232 out of 644
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 22:46:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2292 Oligosaccharyltransfer 100.0 8E-168 2E-172 1318.9 43.5 666 30-698 6-679 (751)
2 PF02516 STT3: Oligosaccharyl 100.0 7.8E-60 1.7E-64 533.9 5.4 472 46-587 2-482 (483)
3 COG1287 Uncharacterized membra 100.0 6E-55 1.3E-59 514.6 41.8 579 47-645 18-626 (773)
4 TIGR03663 conserved hypothetic 99.6 6.3E-12 1.4E-16 140.2 39.3 166 50-242 3-168 (439)
5 PF10034 Dpy19: Q-cell neurobl 99.0 7.6E-06 1.6E-10 94.9 42.9 460 100-622 63-584 (642)
6 PRK13279 arnT 4-amino-4-deoxy- 98.9 1.2E-06 2.7E-11 100.1 31.6 148 74-239 29-182 (552)
7 PF02366 PMT: Dolichyl-phospha 98.8 6.4E-07 1.4E-11 92.7 20.7 99 139-239 80-185 (245)
8 TIGR03662 Chlor_Arch_YYY Chlor 98.8 0.00088 1.9E-08 78.9 47.6 76 546-622 594-687 (723)
9 PF13231 PMT_2: Dolichyl-phosp 98.7 8.2E-07 1.8E-11 84.8 18.0 119 118-244 3-122 (159)
10 COG1807 ArnT 4-amino-4-deoxy-L 98.6 6.6E-06 1.4E-10 95.0 22.8 172 53-244 12-185 (535)
11 PF10131 PTPS_related: 6-pyruv 98.5 0.00026 5.7E-09 82.6 34.2 117 116-238 3-120 (616)
12 TIGR03766 conserved hypothetic 98.4 5.7E-05 1.2E-09 86.0 23.4 182 52-255 69-254 (483)
13 KOG3359 Dolichyl-phosphate-man 98.2 7.9E-05 1.7E-09 85.7 19.3 190 43-255 30-239 (723)
14 COG4745 Predicted membrane-bou 98.1 5E-05 1.1E-09 82.2 14.5 164 49-239 16-179 (556)
15 PLN02816 mannosyltransferase 98.1 0.0048 1E-07 70.9 31.5 139 56-212 43-187 (546)
16 PF03901 Glyco_transf_22: Alg9 97.9 0.008 1.7E-07 67.3 29.0 176 56-243 4-186 (418)
17 COG1928 PMT1 Dolichyl-phosphat 97.9 6E-05 1.3E-09 86.5 10.4 183 49-254 25-226 (699)
18 PF11028 DUF2723: Protein of u 97.7 0.0015 3.2E-08 64.2 15.0 112 117-234 20-149 (178)
19 COG5305 Predicted membrane pro 97.2 0.0064 1.4E-07 69.3 15.6 114 98-218 69-191 (552)
20 COG4346 Predicted membrane-bou 97.1 0.011 2.3E-07 62.5 14.0 174 48-237 28-242 (438)
21 PF11847 DUF3367: Domain of un 96.5 2.6 5.6E-05 49.4 35.1 112 114-234 53-168 (680)
22 COG1287 Uncharacterized membra 96.4 1 2.2E-05 54.6 25.9 48 541-588 474-524 (773)
23 PF04188 Mannosyl_trans2: Mann 96.2 0.2 4.4E-06 56.6 18.0 96 140-245 111-207 (443)
24 COG5617 Predicted integral mem 96.2 0.44 9.5E-06 55.8 20.2 96 116-217 69-165 (801)
25 PF09852 DUF2079: Predicted me 95.7 0.61 1.3E-05 52.8 18.8 116 119-249 44-160 (449)
26 PF09913 DUF2142: Predicted me 95.4 2.5 5.5E-05 46.7 21.9 116 117-240 95-214 (389)
27 PF09586 YfhO: Bacterial membr 95.3 10 0.00022 46.5 31.2 80 139-221 87-169 (843)
28 PF04922 DIE2_ALG10: DIE2/ALG1 94.2 1.7 3.7E-05 47.9 16.5 115 76-208 9-127 (379)
29 COG5650 Predicted integral mem 93.8 0.21 4.6E-06 56.1 8.5 179 73-287 114-294 (536)
30 KOG4587 Predicted membrane pro 92.1 1.7 3.7E-05 48.2 12.1 78 542-622 460-544 (605)
31 PF02516 STT3: Oligosaccharyl 90.8 14 0.00031 41.9 18.8 43 411-457 331-373 (483)
32 COG3463 Predicted membrane pro 85.7 53 0.0012 36.6 17.6 88 142-239 88-178 (458)
33 PF09971 DUF2206: Predicted me 83.5 77 0.0017 35.0 22.6 22 540-561 258-279 (367)
34 PF14264 Glucos_trans_II: Gluc 81.0 64 0.0014 34.4 16.4 91 146-242 50-145 (319)
35 COG5542 Predicted integral mem 77.2 27 0.00058 38.7 11.7 115 116-242 95-210 (420)
36 PHA01514 O-antigen conversion 65.9 2.3E+02 0.0051 32.4 16.3 91 146-239 72-165 (485)
37 PF09594 DUF2029: Protein of u 64.0 1.6E+02 0.0035 29.4 16.5 75 153-237 32-110 (241)
38 KOG2647 Predicted Dolichyl-pho 57.7 50 0.0011 36.7 8.8 72 140-214 124-196 (444)
39 COG5427 Uncharacterized membra 55.1 25 0.00053 39.0 5.9 91 548-639 555-661 (684)
40 PF10060 DUF2298: Uncharacteri 44.3 5.4E+02 0.012 29.5 30.1 101 52-170 60-160 (473)
41 TIGR03459 crt_membr carotene b 42.4 5.7E+02 0.012 29.2 16.8 145 73-239 95-254 (470)
42 PF11345 DUF3147: Protein of u 38.7 2.7E+02 0.0057 25.1 9.1 35 150-184 6-41 (108)
43 PF03155 Alg6_Alg8: ALG6, ALG8 33.5 7.8E+02 0.017 28.2 17.7 72 168-252 131-207 (469)
44 COG5617 Predicted integral mem 29.7 1.1E+03 0.024 28.7 14.9 28 547-574 465-501 (801)
45 PF02553 CbiN: Cobalt transpor 26.6 1.6E+02 0.0034 24.8 5.0 32 72-109 30-61 (74)
46 PF14256 YwiC: YwiC-like prote 25.4 5.5E+02 0.012 23.8 12.8 47 220-266 63-110 (129)
47 PF03419 Peptidase_U4: Sporula 21.4 9.7E+02 0.021 25.3 13.3 25 219-244 35-59 (293)
No 1
>KOG2292 consensus Oligosaccharyltransferase, STT3 subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-168 Score=1318.95 Aligned_cols=666 Identities=63% Similarity=1.104 Sum_probs=620.4
Q ss_pred cchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCchhHHHHHHHHHHhcCccccccccCCCCCCCcc
Q 005395 30 FSFKSFKLKTKQQELLLRVSILGLVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLG 109 (698)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~a~~iRl~~~~~~~~~l~~~Dpyy~~r~~~~~~~~G~~~~~~~fD~~~~yP~G 109 (698)
+++++ ..+.+.+.+++.+++|+++.+++|..|++++++||+++||+|||||||.+++++|||+++|+||||..+|||.|
T Consensus 6 ~~~~~-~~~~~~~~~ll~~~IL~l~~v~~fssRLFaVirfESiIHEFDP~FNYR~T~~l~~~GfY~F~NWFDdRaWYPLG 84 (751)
T KOG2292|consen 6 GGFKR-KSSRKGQQTLLKLLILVLAAVLSFSSRLFAVIRFESIIHEFDPWFNYRATRFLVENGFYKFLNWFDDRAWYPLG 84 (751)
T ss_pred ccccc-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhHHHHHHHHhhHHHHHhhcccccccccc
Confidence 35565 56778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccchHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhc
Q 005395 110 RIIGGTLYPGLMVTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRS 189 (698)
Q Consensus 110 ~~v~~~~~P~l~~~~a~i~~~l~~~g~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~~~~agl~Aall~ai~p~~~~Rs 189 (698)
|.+|||+||||+.++++|++.++.++.+++++++|+++.|+|++++.+.+|+++||+.+..+|++||.++|++|+|++||
T Consensus 85 RiiGGTvYPGLmiTsg~I~~~L~~L~i~v~Ir~VCVflAP~FSg~TsiaTY~ltkEl~~~gaGL~AA~fiaivPgYiSRS 164 (751)
T KOG2292|consen 85 RIIGGTVYPGLMITSGLIYWVLHFLNIPVHIRNVCVFLAPLFSGLTSIATYLLTKELKSAGAGLLAAAFIAIVPGYISRS 164 (751)
T ss_pred eeecccccchHHHHHHHHHHHHHHcccceeehheeeEechhhhchHHHHHHHHHHHHhcccccHHHHHHHhhCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Q 005395 190 VAGSYDNEGVAIFALLLTFYLFVKAVNTGSLAWALASAFGYFYMVSAWGGYVFIINLIPLYVLVLLITGRYSMRLYVAYN 269 (698)
Q Consensus 190 ~~G~~D~e~l~lf~~~l~~~~~~~a~~~~~~~~~~lagl~~~l~~~~w~g~~~~~~~i~l~~~~~~~~~r~~~~~~~~~s 269 (698)
++|.+|||++++|++++++|+|+|++|++++.|+..+++++++|+.+||||+|++|++|+|++++++.+|++.|++++|+
T Consensus 165 VAGSYDNE~IAIfal~~T~ylwiKavkTGSifwa~~~aL~YFYMVsaWGGYvFiiNLIPLHVlvlllmGRyS~rlyiaY~ 244 (751)
T KOG2292|consen 165 VAGSYDNEGIAIFALLFTYYLWIKAVKTGSIFWAACCALAYFYMVSAWGGYVFIINLIPLHVLVLLLMGRYSSRLYIAYT 244 (751)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhheeeccceEEEEechHHHHHHHHHhcccccceeeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005395 270 CMYVLGMLLAMQIRFVGFQHVQSGEHMAAMGVFFLMQVFYFLDWVKYMLSDTKLFQAFLRITVTSAIAVGALALGVGTAS 349 (698)
Q Consensus 270 ~~~~v~t~l~~~~p~~g~~~~~s~~~~~~~~vf~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (698)
.+|++|+++++|+||+||+|++++||+++++||+++|++++..++|.++++ ++|+...++.+..+.+++.+++.+++..
T Consensus 245 t~y~lGtllsmqipfVGFqpv~tsEHmaa~gVF~L~qi~Af~~y~k~~ls~-~~F~~l~~~~v~~~~~~~~vv~~~Lt~~ 323 (751)
T KOG2292|consen 245 TFYCLGTLLSMQIPFVGFQPVRTSEHMAALGVFGLLQIVAFVDYLKGRLSP-KQFQVLFRLVVSLVGVVVFVVVAALTAT 323 (751)
T ss_pred hHHHHHHHHHccCcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999998 9999888877766666677777888899
Q ss_pred cCCCcchhhhhhhcccccccccCcccccccccCCCChhHHHHHhHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 005395 350 GYISPWTGRFYSLLDPTYAKDNIPIIASVSEHQPTAWSSFMFDFHILLFLFPAGLYFCFKKLSDATIFIVMYGLTSMYFA 429 (698)
Q Consensus 350 g~~~p~~~r~~~ll~~~~~~~~~pi~~SVsE~qp~s~~~~~~~~~~~~~l~~~Gl~~~~~~~~~~~lfll~~~~~~~~~s 429 (698)
|+++||+||+++++||+|+|.+.||++||+||||++|.++++|+|++++++|+|+++|+++.+++++|++.|++.++||+
T Consensus 324 g~iaPWtGRfySL~D~~YAK~hIPIIASVSEHQPttW~SfffDlhiLv~lfPaGl~~Cfk~l~De~vFiilY~v~~~YFa 403 (751)
T KOG2292|consen 324 GYIAPWTGRFYSLWDTGYAKIHIPIIASVSEHQPTTWSSFFFDLHILVFLFPAGLYYCFKNLSDERVFIILYGVTSVYFA 403 (751)
T ss_pred ceecccccceeeccCCcchhcccceEEeccccCCCchHHHHHHHHHHHHhhhhhHHHhhhhcCCceEEEEehHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc---cccCCCCCCCCCCCCCcc---ccCCCcccchhhHHHHH
Q 005395 430 GVMVRLILVATPAVCLISAIAVSATIKNLTSLLRTKSKT---AVAGSSKGTGGSKASSKA---SFDQSQPFQKNGAIALL 503 (698)
Q Consensus 430 ~~~~Rf~~~lap~~ailagi~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~k~~~~---~~~~~~~~~~~~~~~~~ 503 (698)
.+|+|+++.++|++|+++|++++.+++...+..+.++.+ ++++++++ ||..|.+++ ..++.+..+...+.+++
T Consensus 404 GVMVRLmLtLtP~vCils~ia~S~~~~~y~~~~~~~~~~~~~~~~~~~d~-~k~~~vk~~~~~~~~~~~~~~~~~~~~~~ 482 (751)
T KOG2292|consen 404 GVMVRLMLTLTPVVCILSGIAFSQLLDTYLKSDDTKREKSSISSASAEDE-KKAGKVKSRSKKQGKQTEGVSLNVASIVI 482 (751)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhcccccCCCccccccc-hhhhhhhhhhhhccccccCcchhhHHHHH
Confidence 999999999999999999999999999887644322211 11111111 121111111 11223355567777777
Q ss_pred HHHHHHHHhhhhccccccccccCCCceeeeeccCCCCcccchhHHHHHHHHHhcCCCCCeeEeeccccchhhhhcCceee
Q 005395 504 LGAFYLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQITAMGNRTVI 583 (698)
Q Consensus 504 ~~l~~ll~~~~~~~~~~~~~~ys~Psi~~~~~~~~g~~~i~~dw~eAl~WLr~NTp~~s~VmSWWDYGy~I~~~a~R~tv 583 (698)
..++.++..|+.||+|+++++||+||++++++.++|++.+.||+||||.|||+|||+|++|||||||||||+.||||+++
T Consensus 483 ~~~~~~l~~f~~H~tWvTs~AYSsPSiVL~s~~~dg~r~i~DDFREAY~WLr~NT~~DakvmsWWDYGYQI~gMAnRTtl 562 (751)
T KOG2292|consen 483 LVMAMLLIMFVVHCTWVTSEAYSSPSIVLSSRGNDGSRIIFDDFREAYYWLRQNTPEDAKVMSWWDYGYQIAGMANRTTL 562 (751)
T ss_pred HHHHHHHHHHHheeeeeeccccCCCcEEEEeecCCCCeeeehhhHHHHHHHHhCCcccchhhhhhhccchhhhcccceEE
Confidence 77777788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhHHHHhhcCCHHHHHHHHHhcCCcEEEEEeCCcccCCcchhhhHHHHHHhcCCCCC-CCCCCCCcc-cc
Q 005395 584 VDNNTWNNTHIATVGRAMSSYEDEAYEIMRSLDVDYVLVVFGGVTGYSSDDINKFLWMVRIGGGVFP-VIKEPDYLV-NG 661 (698)
Q Consensus 584 aDgnt~n~~~i~~vg~~las~e~~A~~il~~l~v~YVlv~~g~~~~~~~ddi~Kf~wm~ria~~~~~-~i~~~~y~~-~~ 661 (698)
+|||||||+||+++|++|+|+||+|++|||+||||||+|+|||++||++||||||.||+|||++.+| ||+|+||++ +|
T Consensus 563 VDNNTWNNtHIa~VGkAMsS~EekayeImr~lDVdYVLVIFGG~iGYssDDINKFLWMvRI~~g~~p~~IkE~dy~t~~G 642 (751)
T KOG2292|consen 563 VDNNTWNNTHIATVGKAMSSPEEKAYEIMRELDVDYVLVIFGGLIGYSSDDINKFLWMVRIGGGEHPKHIKERDYFTPTG 642 (751)
T ss_pred eecCcccchHHHHHHhhcCCcHHHHHHHHHHcCCCEEEEEecccccCCcchhhhhheeeeecCCcChhhcccccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 899999998 79
Q ss_pred ccccCCCCChhhHHHHhhhhhccccccceeccCCCCC
Q 005395 662 DYRVDKGAAPKMLNCLMYKLSYYRFGELVTEYGKPPG 698 (698)
Q Consensus 662 ~~~~~~~~s~~~~~sllykl~y~~~~~~~~~~~~~~~ 698 (698)
+||+|.++||+|.||||||||||||++++|+.++|+|
T Consensus 643 EfRvD~~asptmlNcLmYKmsYyrfge~~~~~~~~~G 679 (751)
T KOG2292|consen 643 EFRVDAEASPTMLNCLMYKMSYYRFGELYTEFNGPPG 679 (751)
T ss_pred ceecCCCCCHHHHHHHHHHHHhhhhhhhccccCCCCC
Confidence 9999999999999999999999999999999999987
No 2
>PF02516 STT3: Oligosaccharyl transferase STT3 subunit; InterPro: IPR003674 N-linked glycosylation is a ubiquitous protein modification, and is essential for viability in eukaryotic cells. A lipid-linked core-oligosaccharide is assembled at the membrane of the endoplasmic reticulum and transferred to selected asparagine residues of nascent polypeptide chains by the oligosaccharyl transferase (OTase) complex []. This family consists of the oligsacharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosccharyl transferase (OTase) complex of proteins and is required for its activity [].; GO: 0004576 oligosaccharyl transferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 3AAG_B 2ZAI_D 2ZAG_A 3RCE_A.
Probab=100.00 E-value=7.8e-60 Score=533.90 Aligned_cols=472 Identities=33% Similarity=0.584 Sum_probs=286.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccCCchhHHHHHHHHHHhcCccccccccCCCCCCCcccccCccccchHHHHHH
Q 005395 46 LRVSILGLVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAA 125 (698)
Q Consensus 46 ~~~~~l~~i~~~a~~iRl~~~~~~~~~l~~~Dpyy~~r~~~~~~~~G~~~~~~~fD~~~~yP~G~~v~~~~~P~l~~~~a 125 (698)
+..+++++++.++.+.|+++..+++..++|+|||||+|++|++++||+.+..+|||+++|||+|+++. -.|++..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dpyy~~r~~~~~~~~G~~~~~~~fd~~~~yP~G~~i~--~~pl~~~l~~ 79 (483)
T PF02516_consen 2 IFVVIFALIFRLAFYYRVFSVFDGGPYLNEFDPYYHYRLIEYIVNNGIFPFYNWFDPFTWYPWGRPID--WPPLFPYLTA 79 (483)
T ss_dssp --------HHHHHHHHHHHHHTHHHHHHSS-GGGEETTEE--S-HHHHHHHHHHHHHHS---TTS-----TT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhceeeeeeceeeeeCCCHHHHHHHHHHHHHcCCCcccCcCCccccCCCCCccC--cccHHHHHHH
Confidence 34566778888899999888777778889999999999999999999546679999999999999984 1244445557
Q ss_pred HHHHHHHhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhccCCCCchhHHHHHHHH
Q 005395 126 FIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALL 205 (698)
Q Consensus 126 ~i~~~l~~~g~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~~~~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~lf~~~ 205 (698)
.+++++..++. .+++++|.++||++|+++++++|+++||++|+++|++||+++|++|+|++||++|++|||++++++++
T Consensus 80 ~~~~~~~~~~~-~~l~~v~~~~ppvl~~L~vi~~y~~~~~~~~~~~Gl~aA~l~a~~p~~l~RT~~G~~D~~~~~~~f~~ 158 (483)
T PF02516_consen 80 AFYAILGGFGP-VSLYEVAFWLPPVLGALTVIPVYLLGRRLGGRKAGLLAAFLLAISPGYLSRTMAGFYDHHMLELFFPL 158 (483)
T ss_dssp HHHHS-SS-HH-----HHHHHHHHHHGGGGHHHHHHHHHHTT-HHHHHHHHHHHTTSHHHHHTSSTT--SGGGGTTHHHH
T ss_pred HHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHhcCCCcccchHHHHHHH
Confidence 77777655443 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH--HH
Q 005395 206 LTFYLFVKAVNTGS--LAWALASAFGYFYMVSAWGGY-VFIINLIPLYVLVLLITGRYSMRLYVAYNCMYVLGMLL--AM 280 (698)
Q Consensus 206 l~~~~~~~a~~~~~--~~~~~lagl~~~l~~~~w~g~-~~~~~~i~l~~~~~~~~~r~~~~~~~~~s~~~~v~t~l--~~ 280 (698)
++++++++++++++ +.+++++|+++++++++|+|+ .+..++++++++.+++.+|.+.+.....+...++++++ .+
T Consensus 159 l~~~~~~~a~~~~~~~~~~~~laGl~~~l~~~~W~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 238 (483)
T PF02516_consen 159 LIIYFFLLALKSAKRPLIYAVLAGLALGLYALAWGGYQVFLLIFILLFVIYQLIFDRFSPKILILVGFSVLLATLLGGII 238 (483)
T ss_dssp HHHHHHHHHHHH------THHHHHHHHHHHHHHHS-GGHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHS---HHHHHHHH
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998876 999999999999999999999 78888888888888888887766555554333444444 45
Q ss_pred hhcccccccccchHHHHHHHHHHHHHHHHHHHHHHH--HcCchHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCcchh
Q 005395 281 QIRFVGFQHVQSGEHMAAMGVFFLMQVFYFLDWVKY--MLSDTKLFQAFLRIT-VTSAIAVGALALGVGTASGYISPWTG 357 (698)
Q Consensus 281 ~~p~~g~~~~~s~~~~~~~~vf~l~~~~~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~p~~~ 357 (698)
..++.++....+.++.....+++......+...... ..+. +......+.. +.....+.......+...+.+.++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g 317 (483)
T PF02516_consen 239 ALLFIGFYSFRSSSILGAFLVFGLALLLLLGGFLALILWLKS-YSFISLFYPGILFAVLGLIGLVLFFLGFLGLIAPFLG 317 (483)
T ss_dssp HHHHHHHHHST-HHHHHHHHHHHHHHHHHH---------------------------TTTTBG----HHHHHHHHHSSHH
T ss_pred HHHHHhhcceecHHHHHHHHHHHHHHHHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777766556666666655555444444333322 1111 2222211111 11111110111122223444455567
Q ss_pred hhhhhcccccccccCcccccccccCCCChhHHHHHhHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHH-HH
Q 005395 358 RFYSLLDPTYAKDNIPIIASVSEHQPTAWSSFMFDFHILLFLFPAGLYFCFKKLSDATIFIVMYGLTSMYFAGVMVR-LI 436 (698)
Q Consensus 358 r~~~ll~~~~~~~~~pi~~SVsE~qp~s~~~~~~~~~~~~~l~~~Gl~~~~~~~~~~~lfll~~~~~~~~~s~~~~R-f~ 436 (698)
+.+.++++.+.+...|...++.|+|+.++...+......++..|+|++.+.+..+....+...+.....++...++| ..
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (483)
T PF02516_consen 318 ILYSLFGLEYAKSKRPILIFLLEWQPFGLYAYFFGFRFAIFAVPVGIIFLGLFLDYLFLFFRKISIIQIYFLQVIVLVLA 397 (483)
T ss_dssp HHHHHHHHHHHHTT-SSGGGGHHHHHHHHHHHHH-GGGGGGGHHHHHHHHHHHHHHHHHSS------HHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777765455567888999999999999998888887766677776433221111112222333445666666666 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCCCCCCccccCCCcccchhhHHHHHHHHHHHHHhhhhc
Q 005395 437 LVATPAVCLISAIAVSATIKNLTSLLRTKSKTAVAGSSKGTGGSKASSKASFDQSQPFQKNGAIALLLGAFYLLSKYATH 516 (698)
Q Consensus 437 ~~lap~~ailagi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 516 (698)
..++|.++..+++......+.. .++ .... .. .
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~----------------------~~~-------------~~~~---------~~---~- 429 (483)
T PF02516_consen 398 LLLAPAVAIIAAYAISPIISRD----------------------WDE-------------ALKW---------LK---A- 429 (483)
T ss_dssp HHHHHHHHHHHH-----SSTCC----------------------HHH-------------HHHH---------HH---T-
T ss_pred HHHHHHHHHHHHHhhccchhhh----------------------hhh-------------hhHh---------hh---h-
Confidence 5556666655543322111000 000 0000 00 0
Q ss_pred cccccccccCCCceeeeeccCCCCcccchhHHHHHHHHHhcCCCCCeeEeeccccchhhhhcCceeeecCC
Q 005395 517 CTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQITAMGNRTVIVDNN 587 (698)
Q Consensus 517 ~~~~~~~~ys~Psi~~~~~~~~g~~~i~~dw~eAl~WLr~NTp~~s~VmSWWDYGy~I~~~a~R~tvaDgn 587 (698)
+ .. .+ .+..+|||+||++|+|+|||+|++|||||||||||+++|||+|++||+
T Consensus 430 ~-----~~--------~~-----~~~~~~~w~~al~~l~~~t~~~~~V~SWWDYGy~I~~~a~R~~~~DGg 482 (483)
T PF02516_consen 430 S-----IN--------TS-----PPIMNDDWYDALEWLKENTPPDYVVMSWWDYGYWITYIAERPVVADGG 482 (483)
T ss_dssp ------EE--------EE-----T---SSSSSB--CHHH-CSGTT-EEEGGGCCHHHHCCCCGGEESHCTT
T ss_pred h-----cc--------cc-----ccccccccccccccccCCCCccceeeHHHHHhHHHHHhccceEEeCCc
Confidence 0 00 00 234688999999999999999999999999999999999999999997
No 3
>COG1287 Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]
Probab=100.00 E-value=6e-55 Score=514.65 Aligned_cols=579 Identities=25% Similarity=0.374 Sum_probs=363.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh---ccc-cccccCCchhHHHHHHHHHHhcCccccccccCCCCCCCcccccC-ccccchHH
Q 005395 47 RVSILGLVYILAFITRLFSV---LRY-ESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIG-GTLYPGLM 121 (698)
Q Consensus 47 ~~~~l~~i~~~a~~iRl~~~---~~~-~~~l~~~Dpyy~~r~~~~~~~~G~~~~~~~fD~~~~yP~G~~v~-~~~~P~l~ 121 (698)
...+++.++.+++.+|.++. ..+ |..++|+|||||+|+++++++||.. ++++||+.+||+|.+++ +|++|.+.
T Consensus 18 ~~~v~i~i~~~~f~v~~~~~~~~~~~~g~y~~e~Dpyy~~r~~~~~l~~g~~--~~~~~~~~~YP~G~~i~~~pl~~~l~ 95 (773)
T COG1287 18 LLLVLIPILVLGFLVRAFTRSYAFDDPGVYFGEFDPYYHYRLIENLLKNGPP--RDFFDPYDNYPPGSPIDFPPLFLYLT 95 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCcHHHHHHHHHHHHhCCC--ccCCChhhcCCCCCCCCCCchHHHHH
Confidence 33444555666777777662 222 3578999999999999999999953 56889999999998886 55555554
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhccCCCCchhHHHH
Q 005395 122 VTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAI 201 (698)
Q Consensus 122 ~~~a~i~~~l~~~g~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~~~~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~l 201 (698)
.+...+. +. +.+.+++++|.++|+++|+|+++++|+++||+.|+++|++||++++++|+|++||++|++|||+.++
T Consensus 96 ~~~~~~~---~~-~~~~~~~~~~~~~PailG~L~vI~vYl~~r~i~~~~~g~~aa~ll~~~p~~~~rt~~G~~d~~~~~~ 171 (773)
T COG1287 96 AALGLIL---GS-IFPVSLETAALLFPAILGVLTVIPVYLLGRRILGDKTGLLAALLLALAPGYLSRTVAGFYDTDMFEL 171 (773)
T ss_pred HHHHHHH---Hc-cCchHHHHHHHHhhHHHhhHHHHHHHHHHHHHhcchhhHHHHHHHHHhhHHHHHhhcCccCCCchHH
Confidence 4433333 32 2447899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHH
Q 005395 202 FALLLTFYLFVKAVN-----TGSLAWALASAFGYFYMVSAWGGYVFIINLIPLYVLVLLITG-RYSMRLYVAYNCMYVLG 275 (698)
Q Consensus 202 f~~~l~~~~~~~a~~-----~~~~~~~~lagl~~~l~~~~w~g~~~~~~~i~l~~~~~~~~~-r~~~~~~~~~s~~~~v~ 275 (698)
++++++++++.++++ +|+..++++||+++++++++|+|+.++..++.++++++.+.. +..++....+.+..+..
T Consensus 172 ~~~~~~l~~~~~aL~~~~~~~~~~~~~~lag~~~~l~~~sW~g~~~~~~i~l~~~~~~~v~~~~~~~~~~~~~~~~~v~~ 251 (773)
T COG1287 172 LLPLFALFFFLLALKAAKKLKKPVIYALLAGLALGLLALAWGGYYYILAILLLYALVLLVLAFLRGKKTDILGFVGLVTL 251 (773)
T ss_pred HHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHcCCccchhhhhhhHHH
Confidence 999999999999987 478999999999999999999999999988888888877654 33333333333333333
Q ss_pred HHHHHhh--ccccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 005395 276 MLLAMQI--RFVGFQHVQ-SGEHMAAMGVFFLMQVFYFLDWVKYMLSDTKLFQAFLRITVTSAIAVGALALGVGTASGYI 352 (698)
Q Consensus 276 t~l~~~~--p~~g~~~~~-s~~~~~~~~vf~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 352 (698)
++..++. |..|+.... +..+.. .+...+..+.....+.+....+ +.+.......+..+++++.++..+.......
T Consensus 252 ~~~~~l~~~~~~g~~~~~~~gf~~~-~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ 329 (773)
T COG1287 252 TLLSLLILPPLLGFSGYYYSGFSVL-LGFIVLAVLGLLFSLVKNFELR-KFFAYLVPLTLSLALILGGLLLFLELLRAYI 329 (773)
T ss_pred HHHHHHhhccccchhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHhhc-cccceEeeeeeehHHHHHHHHHHHhccceEE
Confidence 3343333 666776644 443333 2222333333333334333222 2222223333322222332333323223344
Q ss_pred CcchhhhhhhcccccccccCcccccccccCCCChh---HHHHHhHHHHHHHH-----HHHHHHhhcCCCchHHHHHHHHH
Q 005395 353 SPWTGRFYSLLDPTYAKDNIPIIASVSEHQPTAWS---SFMFDFHILLFLFP-----AGLYFCFKKLSDATIFIVMYGLT 424 (698)
Q Consensus 353 ~p~~~r~~~ll~~~~~~~~~pi~~SVsE~qp~s~~---~~~~~~~~~~~l~~-----~Gl~~~~~~~~~~~lfll~~~~~ 424 (698)
.+.+++.....+..+. +.. +|.|..|.... +....+.-..++.. ...+.+.++.+++++|+++|.++
T Consensus 330 ~~~~~~~~~~~~~~~~----~~~-~i~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~v~ 404 (773)
T COG1287 330 LPISGRLYVGGLQVYL----PFG-TIAEAAPIFLPLGITNAALFGAAGFFALLLGILLLAYFLVRRPKKEGLFLLVWLVL 404 (773)
T ss_pred EeeccceeEeeeeeee----ecc-hhhhhhhheeeccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 4444544443333332 111 45555553211 22222222222222 22333456678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcccccccCCCCCCCCCCCCCccccCCCcccchhhHHHHH
Q 005395 425 SMYFAGVMVRLILVATPAVCLISAIAVSATIKNLTSL-LRTKSKTAVAGSSKGTGGSKASSKASFDQSQPFQKNGAIALL 503 (698)
Q Consensus 425 ~~~~s~~~~Rf~~~lap~~ailagi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 503 (698)
++|++..|+||.++++|++|+++|++++.+.|.+.+. .+.. ..... ...+..+.-.....+.............
T Consensus 405 s~y~~~~~~Rf~~~~a~~vai~~g~~l~~~~e~l~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (773)
T COG1287 405 SFYAALTQVRFAFYLAPAVAILAGIGLGQLLEILKLGRVEKA----NGSAI-SLVASLADVAGFALSVKVLSAVPVLIVL 479 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc----cccce-eEEEEeccccccceeeeeeehhHHHHHH
Confidence 9999999999999999999999999999999987432 1100 00000 0000000000000000000001111111
Q ss_pred HHHHHHHHhhhhccccccccccCCCceeeeeccCCCCcccchhHHHHHH--HHHhcCCCCCeeEeeccccchhhhhcCce
Q 005395 504 LGAFYLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYF--WLRQNTPPDAKVMSWWDYGYQITAMGNRT 581 (698)
Q Consensus 504 ~~l~~ll~~~~~~~~~~~~~~ys~Psi~~~~~~~~g~~~i~~dw~eAl~--WLr~NTp~~s~VmSWWDYGy~I~~~a~R~ 581 (698)
....+...-...+.......+.........+.+++.++...|++.+..+ |++..+.++..|+|||||||||+++++|+
T Consensus 480 ~~~a~p~~~~~~~~~~~~~~~w~d~~~wi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~swwd~g~~i~~~~~~~ 559 (773)
T COG1287 480 ASLALPWLRNSTNPSDVTGAAWWDAGYWIRSSTPDNSLDYADGYESPLAWEWFASPSLAIYAVNSWWDYGHWIVYVGDRI 559 (773)
T ss_pred HHHHhHHHHhccccccccccccccccceEEeecCCCCcccccccCCccccchhhcccccccceeeeecCCeeEEEEEeec
Confidence 1111111111111111110111112222233344444455556555553 34333333378999999999999999999
Q ss_pred eeecCCCCCchhhhHHHHhhc-CCHHHHHHHHHhc----CCcEEEEEeCCcccCCcchhhhHHHHHHhc
Q 005395 582 VIVDNNTWNNTHIATVGRAMS-SYEDEAYEIMRSL----DVDYVLVVFGGVTGYSSDDINKFLWMVRIG 645 (698)
Q Consensus 582 tvaDgnt~n~~~i~~vg~~la-s~e~~A~~il~~l----~v~YVlv~~g~~~~~~~ddi~Kf~wm~ria 645 (698)
+++|+..+|..++ ..+..+ ++|+++.++++++ +++||+++..+..++...|.++|+|+.|+.
T Consensus 560 ~~~~~f~a~~~~~--~~~~y~~~~~~~a~~il~~~~~~~~~~yv~~~~~~~~~~~~~~~~~f~~~~~~~ 626 (773)
T COG1287 560 PVANPFQAGILLI--AQKFYTASSEEEALPILSKTDPSPDVRYVVLDIPRTIGKFYSDGAKFPWIPRSE 626 (773)
T ss_pred ccccCccccCccc--ccccccCCchhhhhhhHHhhCCCCCCcEEEEeccccccccccccceeccccccc
Confidence 9999999988883 334444 5689999999999 699999988887676677899999999985
No 4
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=99.61 E-value=6.3e-12 Score=140.17 Aligned_cols=166 Identities=18% Similarity=0.225 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHhhhccccccccCCchhHHHHHHHHHHhcCccccccccCCCCCCCcccccCccccchHHHHHHHHHH
Q 005395 50 ILGLVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAFIYW 129 (698)
Q Consensus 50 ~l~~i~~~a~~iRl~~~~~~~~~l~~~Dpyy~~r~~~~~~~~G~~~~~~~fD~~~~yP~G~~v~~~~~P~l~~~~a~i~~ 129 (698)
.++++.++++.+|+... .. ..+ ++|.-+|-..++.+.++|... |||..+ | |.+.+..+..++
T Consensus 3 ~~~~i~l~al~lRl~~L-g~-~~~-~~DEa~ya~~a~~ml~~g~~~----~~p~~h-~----------Pll~wl~A~~~~ 64 (439)
T TIGR03663 3 LVILIVLFALLLRLFEL-GL-RVF-HHDEAIHASFILKLLETGVYS----YDPAYH-G----------PFLYHITAAVFH 64 (439)
T ss_pred HHHHHHHHHHHHHHHhc-CC-CCC-CCCchhHHHHHHHHHhcCCCC----cCCCCC-C----------CHHHHHHHHHHH
Confidence 45677888999999873 22 334 689888888999999988421 355421 1 556667777777
Q ss_pred HHHhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhccCCCCchhHHHHHHHHHHHH
Q 005395 130 TLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFY 209 (698)
Q Consensus 130 ~l~~~g~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~~~~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~lf~~~l~~~ 209 (698)
+ ||.+ +-..++.|+++| +.++.+|++.|+..|+++|++||++++++|.++..|.. ..+|+..+++++++++
T Consensus 65 l---FG~s---e~a~RL~~aL~g-~~v~l~~~~~r~~~~~~~al~AAllla~sp~~~~~sr~--~~~D~~l~~f~~lal~ 135 (439)
T TIGR03663 65 L---FGIS---DATARLLPAVFG-VLLPLTAWLYRKRLGDNEVLWAAVLLAFSPVMVYYSRF--MRNDIFVAFFTLLAVG 135 (439)
T ss_pred H---hCCC---HHHHHHHHHHHH-HHHHHHHHHHHHHcCcHHHHHHHHHHHHhHHHHHHHHH--HhHHHHHHHHHHHHHH
Confidence 6 6742 347888888888 55777888999999999999999999999998766643 5578999999999999
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhhhhhHH
Q 005395 210 LFVKAVNTGSLAWALASAFGYFYMVSAWGGYVF 242 (698)
Q Consensus 210 ~~~~a~~~~~~~~~~lagl~~~l~~~~w~g~~~ 242 (698)
+++|+.++++..+.+++|+++++++++.+...+
T Consensus 136 ~l~r~~~~~~~~~~~lag~~~gLa~ltKg~~~l 168 (439)
T TIGR03663 136 AAFRYLDTGKRRYLFLAASALALAFTSKENAYL 168 (439)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876443
No 5
>PF10034 Dpy19: Q-cell neuroblast polarisation; InterPro: IPR018732 This entry represents the Dpy-19 protein from Caenorhabditis elegans and its homologues in other Metazoa, including mammals. In C. elegans, Dpy-19 is required to orient neuroblasts QL and QR correctly on the anterior/posterior (A/P) axis. These neuroblasts are born in the same A/P position, but polarise and migrate left/right asymmetrically, where QL migrates toward the posterior and QR migrates toward the anterior. After their migrations, QL (but not QR) switches on the Hox gene mab-5. Dpy-19 is required along with Unc-40 to express Mab-5 correctly in the Q cell descendants []. A mammalian dpy-19 homologue was found to be expressed in GABAergic neurons []. The mammalian homologue of Mab-5 is the Gsh2 homeobox transcription factor, which plays a crucial role in the development of GABAergic neurons. ; GO: 0016021 integral to membrane
Probab=99.02 E-value=7.6e-06 Score=94.90 Aligned_cols=460 Identities=16% Similarity=0.203 Sum_probs=217.6
Q ss_pred cCCCCCCCcccccC--ccccchHHHHHHHHHHHHHhhcchhhHHHHHHHHhhH--HHHHHHHHHHHHHHHhcchh-HHHH
Q 005395 100 FDSESWYPLGRIIG--GTLYPGLMVTAAFIYWTLRFLRFAVHIREVCVLTAPF--FASNTTVVAYFFGKEIWDSG-AGLV 174 (698)
Q Consensus 100 fD~~~~yP~G~~v~--~~~~P~l~~~~a~i~~~l~~~g~~~~~~~v~~~~p~i--~~~l~vi~~yll~~~l~~~~-agl~ 174 (698)
.|..+-||.-.++= =.+||-+ .++.+|++........ -.-+..++-.+ ++++.+...|+.+..+.|.. +|++
T Consensus 63 ~dn~te~p~~IN~l~RfnlypEv--il~~~yr~~~~~~~~~-~~P~yFYi~~Vf~l~g~~v~~Lf~~~~~lSgS~l~Gll 139 (642)
T PF10034_consen 63 NDNRTEYPRTINALQRFNLYPEV--ILAVLYRIFPSIQNFL-GEPVYFYIYSVFGLQGLYVTALFLYGWYLSGSWLGGLL 139 (642)
T ss_pred cCCCccchhhhhHHHHhhhhHHH--HHHHHHHHHHHhhhcc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 58899999764431 2367777 5667788865321111 02234444444 45689999999999998865 6777
Q ss_pred HHHHHHHhhhhhhhccCCCCc-----hhHHHHHHHHHHHHHHHHHHhh--cc--HHHHHHHHHHHHHHHHhhhhhHHHHH
Q 005395 175 AAAFIAICPGYISRSVAGSYD-----NEGVAIFALLLTFYLFVKAVNT--GS--LAWALASAFGYFYMVSAWGGYVFIIN 245 (698)
Q Consensus 175 Aall~ai~p~~~~Rs~~G~~D-----~e~l~lf~~~l~~~~~~~a~~~--~~--~~~~~lagl~~~l~~~~w~g~~~~~~ 245 (698)
+++... +.|.-..+++ -|.++..++.+=.++....+|+ ++ ....++-.++....++.|+=..|++.
T Consensus 140 ~v~~f~-----fNh~e~TRV~~tpPLREnfA~Pf~~lQ~~~lt~~Lr~~~~~~~~~~~~~l~~st~~f~l~WQFsqFill 214 (642)
T PF10034_consen 140 TVLWFF-----FNHGETTRVMWTPPLRENFALPFFWLQMAALTYILRSNNRQSERKCLFALFVSTFFFMLTWQFSQFILL 214 (642)
T ss_pred HHHHHH-----HccccceeeeecCcchhhcccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766654 4555555555 3888777776666666655655 31 22223334555557789987777554
Q ss_pred HHHHHHHHHHHHhcchh----hHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCch
Q 005395 246 LIPLYVLVLLITGRYSM----RLYVAYNCMYVLGMLLAMQIRFVGFQHVQSGEHMAAMGVFFLMQVFYFLDWVKYMLSDT 321 (698)
Q Consensus 246 ~i~l~~~~~~~~~r~~~----~~~~~~s~~~~v~t~l~~~~p~~g~~~~~s~~~~~~~~vf~l~~~~~~~~~l~~~~~~~ 321 (698)
.=.+-.+....++--.. +.+..+...++++-++.+ |-....++... ..++.++... .+++++...
T Consensus 215 tQ~~sLf~l~~l~~i~~~k~~~i~~~~~~Sl~l~~lLqF-----gN~mLL~S~~~-----S~ll~~~~~~-~~~~~v~~~ 283 (642)
T PF10034_consen 215 TQIASLFALYILGYIPSKKVKKIYKIHMFSLLLSFLLQF-----GNSMLLTSYYL-----SSLLSLLLII-CLQQNVKKG 283 (642)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHH-----HHHHHHHHHH-Hhhhhhhcc
Confidence 22222222333333222 344444444444433322 11111111111 1111111111 122221110
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCcch--hhhhhhccc-----ccccccCcccccccccCCCChhHHHHHh
Q 005395 322 KLFQAFLRITV-TSAIAVGALALGVGTASGYISPWT--GRFYSLLDP-----TYAKDNIPIIASVSEHQPTAWSSFMFDF 393 (698)
Q Consensus 322 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~p~~--~r~~~ll~~-----~~~~~~~pi~~SVsE~qp~s~~~~~~~~ 393 (698)
....+.....+ ....+.+.+.+..++. ..++ .. +....++-. .+..-...++.==.|-+..++..+....
T Consensus 284 ~~~~~~~~~~i~~~~~~~~Ti~Lk~lis-~iL~-~~DD~HI~~lLkaKfgL~~~~dFdT~LYtC~~eFdfl~~~tf~rlt 361 (642)
T PF10034_consen 284 LFVSRIIKWLIQSLLWLCLTIILKFLIS-KILG-VKDDAHIFDLLKAKFGLTSYRDFDTMLYTCAPEFDFLSKDTFLRLT 361 (642)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH-HHcC-ccccHHHHHHHHHHhcccCCCCchhHHHHHHHHhcccchHHHHHHH
Confidence 11111111111 1111122222222221 1111 11 112222210 0111123355555777888887765543
Q ss_pred HHH-HHHH-HHHHHHH-------h---hc-----------------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005395 394 HIL-LFLF-PAGLYFC-------F---KK-----------------LSDATIFIVMYGLTSMYFAGVMVRLILVATPAVC 444 (698)
Q Consensus 394 ~~~-~~l~-~~Gl~~~-------~---~~-----------------~~~~~lfll~~~~~~~~~s~~~~Rf~~~lap~~a 444 (698)
.-+ +... .++...+ + ++ .+++.++.++-.++-..++..-.|+=++..|=+|
T Consensus 362 kTlLLP~yilvl~ii~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~Y~~lQ~i~F~~LA~~imRLK~l~tPhmC 441 (642)
T PF10034_consen 362 KTLLLPFYILVLVIILFSILQDIFRRLSRNSNKQRKEKETEDGRIGERPELVYHVLQTIAFGLLALLIMRLKYLWTPHMC 441 (642)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 211 1111 1111111 1 11 1124467777766666777888999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCCCCCCccccCCCcccchhhHHHHHHHHHHHHHhhhhccccccccc
Q 005395 445 LISAIAVSATIKNLTSLLRTKSKTAVAGSSKGTGGSKASSKASFDQSQPFQKNGAIALLLGAFYLLSKYATHCTWVTSEA 524 (698)
Q Consensus 445 ilagi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ 524 (698)
+.|+..-+.-+ ..+.... .+.++. .....+..+..+++ ..+. ..+
T Consensus 442 v~As~vcS~~~---~~~l~~~------------~~~~~~----------~~~~~~~~v~~~il--~~~~-~~g------- 486 (642)
T PF10034_consen 442 VMASLVCSPEL---FGWLFKK------------LRLKPP----------LRRIVRFAVPILIL--ASMS-YKG------- 486 (642)
T ss_pred HHHHHHhhHHH---HHHHhhh------------ccccch----------HHHHHHHHHHHHHH--HHHH-Hhc-------
Confidence 99988433321 1111100 000000 00122222222111 1111 111
Q ss_pred cCCCceeeeeccCCCCcccchhHHHHHHHHHhcCCCCCeeEeeccccchhhhhcCceeeecCCCCCchhhhHHH------
Q 005395 525 YSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQITAMGNRTVIVDNNTWNNTHIATVG------ 598 (698)
Q Consensus 525 ys~Psi~~~~~~~~g~~~i~~dw~eAl~WLr~NTp~~s~VmSWWDYGy~I~~~a~R~tvaDgnt~n~~~i~~vg------ 598 (698)
-|.+.. +....++..++|-.|=++|+|.|||+|++...-=.----+---++|+.+ |++| -++...-.
T Consensus 487 --~~~l~~--e~~~~~Ef~npd~~eL~~WIk~nt~~~AvFAGsM~lma~vkL~T~r~iv--nHPh-YEd~~LR~RT~~vY 559 (642)
T PF10034_consen 487 --FPNLQE--ELSILGEFYNPDTEELMEWIKSNTPPDAVFAGSMPLMASVKLCTGRPIV--NHPH-YEDADLRERTKDVY 559 (642)
T ss_pred --chhHHH--HhhhccCCCCcCHHHHHHHHHhcCCCCCeeccCcchHHHHHHhcCCccc--cCcc-cCCHHHHHHHHHHH
Confidence 122221 1111122345566999999999999999744322222234445677777 3321 22222211
Q ss_pred Hhhc-CCHHHHHHHHHhcCCcEEEE
Q 005395 599 RAMS-SYEDEAYEIMRSLDVDYVLV 622 (698)
Q Consensus 599 ~~la-s~e~~A~~il~~l~v~YVlv 622 (698)
.+.+ .|.+|.+++++++++||+++
T Consensus 560 ~iysr~~~~ev~~~l~~~~~~Y~Il 584 (642)
T PF10034_consen 560 QIYSRRSAEEVYKILRKYKVDYVIL 584 (642)
T ss_pred HhhcCCCHHHHHHHHHHhCCeEEEE
Confidence 2445 48999999999999999997
No 6
>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional
Probab=98.93 E-value=1.2e-06 Score=100.11 Aligned_cols=148 Identities=13% Similarity=0.049 Sum_probs=102.2
Q ss_pred cCCchhHHHHHHHHHHhcCccccccccCCCCCCCcccccCccccchHH-HHHHHHHHHHHhhcchhhHHHHHHHHhhHHH
Q 005395 74 HEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLM-VTAAFIYWTLRFLRFAVHIREVCVLTAPFFA 152 (698)
Q Consensus 74 ~~~Dpyy~~r~~~~~~~~G~~~~~~~fD~~~~yP~G~~v~~~~~P~l~-~~~a~i~~~l~~~g~~~~~~~v~~~~p~i~~ 152 (698)
-..|.=.+...++.++++| ||..|+.+ |.+ ...-|++. ++.++.+++ ||. .+..+++.+++.+
T Consensus 29 w~~DE~ryA~iareMl~sG-----dWlvP~~~---g~~--y~eKPPL~yWl~Als~~L---FG~---~~~a~RLpsaL~~ 92 (552)
T PRK13279 29 WQPDETRYAEISREMLASG-----DWIVPHFL---GLR--YFEKPIAGYWINSIGQWL---FGD---NNFGVRFGSVFST 92 (552)
T ss_pred CCCchHHHHHHHHHHHHhC-----CcCccccC---CCc--CCCCCcHHHHHHHHHHHH---cCC---CcHHHHHHHHHHH
Confidence 3577777889999999998 56565542 222 12456775 556666666 663 3356777788888
Q ss_pred HHHHHHHHHHHHHhc-chhHHHHHHHHHHHhhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHh----hccHHHHHHHH
Q 005395 153 SNTTVVAYFFGKEIW-DSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVN----TGSLAWALASA 227 (698)
Q Consensus 153 ~l~vi~~yll~~~l~-~~~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~lf~~~l~~~~~~~a~~----~~~~~~~~lag 227 (698)
.++++.+|.++|+++ ++++|++|+++...++.....+..... |+...++..++++++..+.+ +++..+.++.|
T Consensus 93 ~lt~llvy~larrl~~~r~~AllAaLIlls~~~v~~~g~~a~~--D~~l~~fi~lal~~f~~~~~~~~~~~~~~~~lllG 170 (552)
T PRK13279 93 LLSALLVYWLALRLWRDRRTALLAALIYLSLFLVYGIGTYAVL--DPMITLWLTAAMCSFWLALQAQTRRGKIGGYLLLG 170 (552)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHH
Confidence 899999999999996 678999999999999887665544444 45445555544444444433 33555667889
Q ss_pred HHHHHHHHhhhh
Q 005395 228 FGYFYMVSAWGG 239 (698)
Q Consensus 228 l~~~l~~~~w~g 239 (698)
++.|+..++-+-
T Consensus 171 la~Glg~LTKG~ 182 (552)
T PRK13279 171 LACGMGFMTKGF 182 (552)
T ss_pred HHHHHHHHhcch
Confidence 999988888753
No 7
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=98.78 E-value=6.4e-07 Score=92.71 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=84.5
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHhhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHH--
Q 005395 139 HIREVCVLTAPFFASNTTVVAYFFGKEIWD-SGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAV-- 215 (698)
Q Consensus 139 ~~~~v~~~~p~i~~~l~vi~~yll~~~l~~-~~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~lf~~~l~~~~~~~a~-- 215 (698)
..+...++.+.++|+++++.+|+++|++++ +++|++|+++.+..|.++.-|. ..-+|+...++.+++++++.+..
T Consensus 80 ~~~~~~R~~~~l~~~~~~~l~y~~~~~~~~s~~~al~aa~l~~~~~~~~~~sr--~~~~D~~l~~f~~la~~~~~~~~~~ 157 (245)
T PF02366_consen 80 VNYWAARLPSALFGALTVPLVYLILRRLFGSRRAALLAALLLALDPSLIVQSR--YALLDSILLFFILLAIYCLLRWYRY 157 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 345678999999999999999999999976 7899999999999999876554 35678999999999999999984
Q ss_pred ---hhccHHHHHHHHHHHHHHHHhh-hh
Q 005395 216 ---NTGSLAWALASAFGYFYMVSAW-GG 239 (698)
Q Consensus 216 ---~~~~~~~~~lagl~~~l~~~~w-~g 239 (698)
+++++.+.+++|++.|+.+.+- .+
T Consensus 158 ~~~~~~~~~~~~l~gi~lGla~~~K~~~ 185 (245)
T PF02366_consen 158 QPFRRKWWLWLLLAGIALGLAILTKGPG 185 (245)
T ss_pred cccccccHHHHHHHHHHHHHHHHhchhH
Confidence 3456788999999999999984 44
No 8
>TIGR03662 Chlor_Arch_YYY Chlor_Arch_YYY domain. Members of this highly hydrophobic probable integral membrane family belong to two classes. In one, a single copy of the region modeled by This model represents essentially the full length of a strongly hydrophobic protein of about 700 to 900 residues (variable because of long inserts in some). The domain architecture of the other class consists of an additional N-terminal region, two copies of the region represented by this model, and three to four repeats of TPR, or tetratricopeptide repeat. The unusual species range includes several Archaea, several Chloroflexi, and Clostridium phytofermentans. An unusual motif YYYxG is present, and we suggest the name Chlor_Arch_YYY protein. The function is unknown.
Probab=98.75 E-value=0.00088 Score=78.93 Aligned_cols=76 Identities=24% Similarity=0.426 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhcCCCCCeeEe----eccccchhhhhcCceeeecCCC-----C--------CchhhhHHHHhhc-CCHHH
Q 005395 546 DYREAYFWLRQNTPPDAKVMS----WWDYGYQITAMGNRTVIVDNNT-----W--------NNTHIATVGRAMS-SYEDE 607 (698)
Q Consensus 546 dw~eAl~WLr~NTp~~s~VmS----WWDYGy~I~~~a~R~tvaDgnt-----~--------n~~~i~~vg~~la-s~e~~ 607 (698)
+=.+|.+|||||+|++++|+. -.+|+.-+..++.|+|+. |-+ | .+++...+..+.+ +|++|
T Consensus 594 ~d~~Ai~WLr~n~~g~~ViLeA~g~~Y~~~~rvSa~TGlpTVl-GW~~He~~wR~~~~~~~~~~R~~dV~~IY~s~d~~~ 672 (723)
T TIGR03662 594 EDAAAIRWLRQNIDGTPVILEAAGDSYTYASRVSAATGLPTVI-GWAGHEWQWRGGVDETEVGERVDDVETIYTSGDPTE 672 (723)
T ss_pred chHHHHHHHHhcCCCCCEEEecCCccccCCccchhhcCCccee-cChhHHhHhcCCCChhhHHHHHHHHHHHHcCCCHHH
Confidence 347999999999999999887 356788899999999988 422 1 1223334455655 68999
Q ss_pred HHHHHHhcCCcEEEE
Q 005395 608 AYEIMRSLDVDYVLV 622 (698)
Q Consensus 608 A~~il~~l~v~YVlv 622 (698)
+.+++|+.|+|||.+
T Consensus 673 ~~~Ll~kY~V~YVyV 687 (723)
T TIGR03662 673 ARELLERYGVDYVYV 687 (723)
T ss_pred HHHHHHHcCCeEEEE
Confidence 999999999999999
No 9
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=98.72 E-value=8.2e-07 Score=84.75 Aligned_cols=119 Identities=19% Similarity=0.309 Sum_probs=98.2
Q ss_pred chH-HHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhccCCCCch
Q 005395 118 PGL-MVTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSYDN 196 (698)
Q Consensus 118 P~l-~~~~a~i~~~l~~~g~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~~~~agl~Aall~ai~p~~~~Rs~~G~~D~ 196 (698)
||+ .+..+.+.++ +|. .....++...+++.++++.+|.++|++.+++.+++++++.++.|.+..-+. ...+
T Consensus 3 pPl~~~~~~~~~~l---~G~---~~~~~~~~~~l~~~~~~~~~y~i~r~~~~~~~a~~~~l~~~~~p~~~~~~~--~~~~ 74 (159)
T PF13231_consen 3 PPLYFLLLALFFKL---FGD---SVWALRLFNILFSLLTLLLIYLIARRLFGRRAALIAALLLALSPMFIFYSA--SARP 74 (159)
T ss_pred ChHHHHHHHHHHHH---hCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHhHHHHHHHH--HHhH
Confidence 344 4556666666 453 345678899999999999999999999999999999999999999766554 4567
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhHHHH
Q 005395 197 EGVAIFALLLTFYLFVKAVNTGSLAWALASAFGYFYMVSAWGGYVFII 244 (698)
Q Consensus 197 e~l~lf~~~l~~~~~~~a~~~~~~~~~~lagl~~~l~~~~w~g~~~~~ 244 (698)
|.+..++..+.+|++.|+.++++..+.+++|++.++...+.+...++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k~~~~~~~ 122 (159)
T PF13231_consen 75 DMLLLFFFLLALYAFYRYIKSKKWRWWILAGLLLGLAFLTKYTFLLLI 122 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888999999999988887754433
No 10
>COG1807 ArnT 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
Probab=98.56 E-value=6.6e-06 Score=95.00 Aligned_cols=172 Identities=18% Similarity=0.216 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHhhhccccccccCCchhHHHHHHHHHHhcCccccccccCCCCCCCcccccCccccchHH-HHHHHHHHHH
Q 005395 53 LVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLM-VTAAFIYWTL 131 (698)
Q Consensus 53 ~i~~~a~~iRl~~~~~~~~~l~~~Dpyy~~r~~~~~~~~G~~~~~~~fD~~~~yP~G~~v~~~~~P~l~-~~~a~i~~~l 131 (698)
++.+++...++... .+..... .|.=++...++++.+.| +|+.|+.+ |..- ...|+++ ++.+..+.+
T Consensus 12 llll~~~~~~l~~l-~~~~~~~-~de~~~~~~~~~m~~s~-----~w~~~~~~---g~~~--~~kPPl~~Wl~a~~~~l- 78 (535)
T COG1807 12 LLLLIALALLLPGL-GSRPLWD-PDEARYAEIAREMLESG-----DWFTPQLL---GLPY--FEKPPLVYWLQALSYLL- 78 (535)
T ss_pred HHHHHHHHHHhCcc-ccCCCCC-CCchhHHHHHHHHHHcC-----CCcceeeC---Cccc--cCCCcHHHHHHHHHHHH-
Confidence 34444555555542 2222333 45555578999999987 44444433 3222 2457776 556666776
Q ss_pred HhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhccCCCCchhHHHHHHHHHHHHHH
Q 005395 132 RFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLF 211 (698)
Q Consensus 132 ~~~g~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~~~~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~lf~~~l~~~~~ 211 (698)
||. -.-..+....+.++++++.+|.++|+++++++|++|+++++..|..+.-+ ...-+|+..+++..+.++++
T Consensus 79 --fG~---~~~~~rl~~~l~~~~~~~l~y~l~k~l~~~~~a~~aali~~~~p~~~~~~--~~~~~D~~l~~f~~la~~~~ 151 (535)
T COG1807 79 --FGV---NEWSARLPSALAGALTALLVYWLAKRLFGRLAALLAALILLLTPLFFLIG--RLALLDAALAFFLTLALALL 151 (535)
T ss_pred --cCc---chHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh--HHHhhhHHHHHHHHHHHHHH
Confidence 562 23456677777788999999999999999999999999999999976533 33556888899999999999
Q ss_pred HHHHhhc-cHHHHHHHHHHHHHHHHhhhhhHHHH
Q 005395 212 VKAVNTG-SLAWALASAFGYFYMVSAWGGYVFII 244 (698)
Q Consensus 212 ~~a~~~~-~~~~~~lagl~~~l~~~~w~g~~~~~ 244 (698)
.++.+.+ +..+..+.|++.|+..++-+...+++
T Consensus 152 ~~~~~~~~~~~~~l~~gl~lGL~~ltKg~~~~~l 185 (535)
T COG1807 152 YLALRARGKLKWLLLLGLALGLGFLTKGPGALLL 185 (535)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHHHhchHHHHH
Confidence 9987764 67778899999999999987755544
No 11
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=98.51 E-value=0.00026 Score=82.63 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=82.3
Q ss_pred ccchHHH-HHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhccCCCC
Q 005395 116 LYPGLMV-TAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSY 194 (698)
Q Consensus 116 ~~P~l~~-~~a~i~~~l~~~g~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~~~~agl~Aall~ai~p~~~~Rs~~G~~ 194 (698)
.||++.+ ..+++..+ +|....-..+..++. ..+..+.+|.++|++..+.+++++|++...+|.++.--..+..
T Consensus 3 FYpPL~yyl~a~l~~l---~g~~~~Ay~l~~~L~---~~l~~~~~Y~~~R~~~~~~~A~l~aiLyl~~py~l~~~y~rgn 76 (616)
T PF10131_consen 3 FYPPLPYYLGALLSLL---FGNPIVAYKLFIFLA---FFLGGLGMYFLGRRLGRRKAAILAAILYLFSPYHLRNIYWRGN 76 (616)
T ss_pred eCCcHHHHHHHHHHHH---hCCHHHHHHHHHHHH---HHHHHHHHHHHHHHhcchhHHHHHHHHHHHhHHHHHHHHhcch
Confidence 4788875 44555554 243333333333333 3346677999999998888999999999999997654333444
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhh
Q 005395 195 DNEGVAIFALLLTFYLFVKAVNTGSLAWALASAFGYFYMVSAWG 238 (698)
Q Consensus 195 D~e~l~lf~~~l~~~~~~~a~~~~~~~~~~lagl~~~l~~~~w~ 238 (698)
-.|.++..++.+.+++..+..++++..+.++.+++++++++++.
T Consensus 77 i~e~lA~~llPlvll~~~~~~~~~~~r~~~~lAl~~all~lsHl 120 (616)
T PF10131_consen 77 IPETLAFALLPLVLLFLYRFIKKRKYRYWILLALSMALLALSHL 120 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhH
Confidence 56888777777777777777777777778888888988888873
No 12
>TIGR03766 conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.
Probab=98.36 E-value=5.7e-05 Score=86.01 Aligned_cols=182 Identities=12% Similarity=0.079 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHhhhccccccccCCchhHHHHHHHHHHhcCccccccccCCCCCCCcccccCccccchHHHHHHHHHHHH
Q 005395 52 GLVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAFIYWTL 131 (698)
Q Consensus 52 ~~i~~~a~~iRl~~~~~~~~~l~~~Dpyy~~r~~~~~~~~G~~~~~~~fD~~~~yP~G~~v~~~~~P~l~~~~a~i~~~l 131 (698)
++++++++.+|+.-+...... ...|+..-+..+. +|... ..-+...-||.- . |+....+.++++
T Consensus 69 ~~l~~~~~i~ql~~i~~~~~~-p~~D~~~v~~~A~----~~~~~--~~~~Y~~~yPnn-------~-g~~l~~~~l~ki- 132 (483)
T TIGR03766 69 IVIFILLLILQLILVTALHPL-IGWDAGAVHTAAT----KSNES--SISNYFSRNPNN-------L-FLLLFMHFLYKL- 132 (483)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-cCcCHHHHHHHHh----cCCCc--ccCceeeECCch-------H-HHHHHHHHHHHH-
Confidence 334445667787765544433 3689966555554 32211 112334555643 1 233444556665
Q ss_pred HhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhccCCCCchhHHHHHHHHHHHHHH
Q 005395 132 RFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLF 211 (698)
Q Consensus 132 ~~~g~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~~~~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~lf~~~l~~~~~ 211 (698)
||.+ ...+...+..++..++++.+|.++|++++++.|.+|+++.++.|++..-...-+ +|.+.+++..+.++++
T Consensus 133 --fg~~--~~~~~~llNil~~~~si~liy~i~k~lf~~~~a~~a~~l~~l~~~~~~y~~~~Y--sd~~~l~~~~l~l~~~ 206 (483)
T TIGR03766 133 --FGET--SWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLLALSPYILIPY--TDTWVLPFVSLFLFLY 206 (483)
T ss_pred --hCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHH
Confidence 6642 444567888899999999999999999999999999999999999654444334 4566666666666655
Q ss_pred HHHHhh----ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 005395 212 VKAVNT----GSLAWALASAFGYFYMVSAWGGYVFIINLIPLYVLVLL 255 (698)
Q Consensus 212 ~~a~~~----~~~~~~~lagl~~~l~~~~w~g~~~~~~~i~l~~~~~~ 255 (698)
....++ +++.+++++|++.++.....+...+++..+.++.++..
T Consensus 207 ~~~~~~~~~~~~~~~~Il~gillal~~~iKp~~iI~liA~~i~~~l~~ 254 (483)
T TIGR03766 207 TVISKKTDLRKKIALSILLGVLLAIAYFIKPSAIIFVIAIFIVLFLQL 254 (483)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 554442 23677899999999999999887766555555554443
No 13
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=7.9e-05 Score=85.68 Aligned_cols=190 Identities=21% Similarity=0.222 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccccccCCchhHHHHHHHHHHhcCccccccccCCCCCCCcccccCccccchHH-
Q 005395 43 ELLLRVSILGLVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLM- 121 (698)
Q Consensus 43 ~~~~~~~~l~~i~~~a~~iRl~~~~~~~~~l~~~Dpyy~~r~~~~~~~~G~~~~~~~fD~~~~yP~G~~v~~~~~P~l~- 121 (698)
.++-..+.++++.++++.+|++-...-..+. +|.=..-..+.++++|-+. +|- .||+-
T Consensus 30 ~~l~~~~~~~~lt~l~f~~Rf~ki~~p~~VV--wDE~HfGkf~S~Yl~~~ff-----~Dv--------------HPPlgK 88 (723)
T KOG3359|consen 30 KSLKEKLLVVLLTVLAFITRFYKIATPNHVV--WDEAHFGKFASYYLNNIFF-----FDV--------------HPPLGK 88 (723)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhccCCCeEE--EecccccchHHHHhcCcee-----ecc--------------CchHHH
Confidence 3333455667888999999998743333332 5553334556666676431 342 35553
Q ss_pred HHHHHHHHHHHhhcc-----------hhhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHhhhhhhhc
Q 005395 122 VTAAFIYWTLRFLRF-----------AVHIREVCVLTAPFFASNTTVVAYFFGKEIW-DSGAGLVAAAFIAICPGYISRS 189 (698)
Q Consensus 122 ~~~a~i~~~l~~~g~-----------~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~-~~~agl~Aall~ai~p~~~~Rs 189 (698)
.+.++...+.+.-|. +...+...+.+++++|+++++++|++.|++. +..++.++|+++++=-+++.-|
T Consensus 89 mL~al~g~L~GydG~f~f~~~g~~~~~~~~y~~mR~f~a~lgsl~vp~~y~t~~~~~~s~~aa~l~allv~~dns~~T~s 168 (723)
T KOG3359|consen 89 MLIALVGYLAGYDGSFDFQSIGEYYPNGVPYVGMRLFSALLGSLTVPLAYLTLKELGFSRLAAALAALLVLFDNSLVTLS 168 (723)
T ss_pred HHHHHHHHHhCCCCCccccCCCccCCCCCchHhHHHHHHHHHhHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchhhh
Confidence 333333333221110 0125668999999999999999999999996 5568899999988888876544
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHH--hhc----c-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 005395 190 VAGSYDNEGVAIFALLLTFYLFVKAV--NTG----S-LAWALASAFGYFYMVSAWGGYVFIINLIPLYVLVLL 255 (698)
Q Consensus 190 ~~G~~D~e~l~lf~~~l~~~~~~~a~--~~~----~-~~~~~lagl~~~l~~~~w~g~~~~~~~i~l~~~~~~ 255 (698)
. ++-=|+..+|+++.++|+++|.- +.+ + +.|..++|+++++.+.+---..|.+..++++++..+
T Consensus 169 r--~ILLDs~Llff~~~~~y~~~r~~~~~~~pfs~~W~~wL~~tGvsLgcaiSvK~vGlft~~~Vgl~~v~~L 239 (723)
T KOG3359|consen 169 R--FILLDSMLLFFMAAAVYCFVRFYTQRKRPFSLRWWKWLLLTGVSLGCAISVKYVGLFTIALVGLYTVREL 239 (723)
T ss_pred h--HHHHhHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhhheeehhhhhHHHHHHHHHHHHHHH
Confidence 3 45668999999999999999975 222 2 467789999999988554333466667777776543
No 14
>COG4745 Predicted membrane-bound mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=5e-05 Score=82.19 Aligned_cols=164 Identities=19% Similarity=0.186 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCCchhHHHHHHHHHHhcCccccccccCCCCCCCcccccCccccchHHHHHHHHH
Q 005395 49 SILGLVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAFIY 128 (698)
Q Consensus 49 ~~l~~i~~~a~~iRl~~~~~~~~~l~~~Dpyy~~r~~~~~~~~G~~~~~~~fD~~~~yP~G~~v~~~~~P~l~~~~a~i~ 128 (698)
+.++.+..+++.+|++.. .. ..+| .|.=-|-..+..++++|-.. |+|..+ | |.|.......+
T Consensus 16 ~~v~~vv~~Al~~RL~~L-g~-r~~h-~DEs~~~~w~Lk~l~~Gaw~----YrPi~H--------G---PfL~hvn~avF 77 (556)
T COG4745 16 LAVIAVVAIALLARLYNL-GL-RPFH-FDESRHATWILKYLEQGAWS----YRPIYH--------G---PFLYHVNYAVF 77 (556)
T ss_pred hhHHHHHHHHHHHHHHhc-CC-Cccc-cchhhHHHHHHHHHhcCcce----eccccc--------C---chhhhhhhhhh
Confidence 345566777889999862 22 3555 67777776666667888533 344421 1 45666666667
Q ss_pred HHHHhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhccCCCCchhHHHHHHHHHHH
Q 005395 129 WTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTF 208 (698)
Q Consensus 129 ~~l~~~g~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~~~~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~lf~~~l~~ 208 (698)
++ +|. -...++.+|++.|+++....+++-+|+.+.. -+..+.++|++|..++-|. |..+|.+..+|+++.+
T Consensus 78 ~~---lGa---sDataRlvvAv~G~llpL~awL~R~rL~d~e-vlal~~LLA~sPvlVYYSR--FmR~Dl~la~ftl~aV 148 (556)
T COG4745 78 GL---LGA---SDATARLVVAVTGVLLPLTAWLYRTRLGDKE-VLALATLLAFSPVLVYYSR--FMRNDLLLAAFTLLAV 148 (556)
T ss_pred hh---ccc---chhhhhhhHHHhhhHHHHHHHHHHHhccchH-HHHHHHHHhcChhhhhHHH--HHhhhHHHHHHHHHHH
Confidence 66 563 3356899999999999999999999986654 4566667789999443332 4688999999999999
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhhhh
Q 005395 209 YLFVKAVNTGSLAWALASAFGYFYMVSAWGG 239 (698)
Q Consensus 209 ~~~~~a~~~~~~~~~~lagl~~~l~~~~w~g 239 (698)
.+.+|++++++..|.-++...+++..-.-+.
T Consensus 149 g~~vR~lDt~R~~yL~~sA~~lalAftaKEn 179 (556)
T COG4745 149 GFAVRYLDTERFRYLYASAVSLALAFTAKEN 179 (556)
T ss_pred HHHHHHhhcccccchhhhhhhhhhhhhhccc
Confidence 9999999998777776777766665555544
No 15
>PLN02816 mannosyltransferase
Probab=98.10 E-value=0.0048 Score=70.94 Aligned_cols=139 Identities=13% Similarity=0.226 Sum_probs=86.4
Q ss_pred HHHHHHHHhhhccccccccCCchhHHH-HHHHHHHhcCccccccccCCCCCCCcccccCccccchHHHHHHHHHHHHHhh
Q 005395 56 ILAFITRLFSVLRYESMIHEFDPYFNY-RTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAFIYWTLRFL 134 (698)
Q Consensus 56 ~~a~~iRl~~~~~~~~~l~~~Dpyy~~-r~~~~~~~~G~~~~~~~fD~~~~yP~G~~v~~~~~P~l~~~~a~i~~~l~~~ 134 (698)
.+.+..|+...+--...++ .|.||+. .-+.+++ .|+ ++.+| -|-|.-|.. .+|.+.. .++++++.+
T Consensus 43 ~~~~~~R~~~al~~~t~f~-pDE~fQslE~ah~~v-fG~-G~lTW----Ew~~~lRS~---~~Pll~a---~~~~~~~~l 109 (546)
T PLN02816 43 LFCLAFRVVNALLIQTYFN-PDEHWQSLEVAHRTI-FGY-GYMTW----EWKRGIRSY---LHPMLFA---FLYKLLQVT 109 (546)
T ss_pred HHHHHHHHHHHHHccccCC-CCchhhhHHHHHHHH-hCC-cccce----ecCCCccch---hHHHHHH---HHHHHHHHh
Confidence 3344566665432223444 8999987 4444443 444 33333 122333333 5777654 456665555
Q ss_pred cch--hhHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhh---hhhhccCCCCchhHHHHHHHHHHHH
Q 005395 135 RFA--VHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPG---YISRSVAGSYDNEGVAIFALLLTFY 209 (698)
Q Consensus 135 g~~--~~~~~v~~~~p~i~~~l~vi~~yll~~~l~~~~agl~Aall~ai~p~---~~~Rs~~G~~D~e~l~lf~~~l~~~ 209 (698)
|.+ .-+..+.+.+..++++++-.-+|.++++.+|+.++..+.++...++. +..||.. .+++..+.++.++
T Consensus 110 ~~~~~~~~~~~pRl~~al~sal~D~~l~kl~~~~~g~~~A~~~L~~sl~swf~~y~~sRTfS-----NslEt~Lt~lAL~ 184 (546)
T PLN02816 110 GLDTPYIMIKAPRLMQSIFSAIGDLYLYKLSDALYGGNVATWSLFCQMANWFIFFCLNRTFS-----NCLETVLTIMGLY 184 (546)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhCccch-----hHHHHHHHHHHHH
Confidence 543 33566788888999999999999999999998888887777777774 3466643 3666666666666
Q ss_pred HHH
Q 005395 210 LFV 212 (698)
Q Consensus 210 ~~~ 212 (698)
.|.
T Consensus 185 ~w~ 187 (546)
T PLN02816 185 YWP 187 (546)
T ss_pred Hhh
Confidence 654
No 16
>PF03901 Glyco_transf_22: Alg9-like mannosyltransferase family; InterPro: IPR005599 Members of this family are glycosylphosphatidylinositol mannosyltransferase enzymes 2.4.1.- from EC [, ]. At least some members are localised in endoplasmic reticulum and involved in GPI anchor biosynthesis [, ]. In yeast the SMP3 (YOR149C) has been implemented in plasmid stability [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0006506 GPI anchor biosynthetic process, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.93 E-value=0.008 Score=67.32 Aligned_cols=176 Identities=17% Similarity=0.185 Sum_probs=105.6
Q ss_pred HHHHHHHHhhhccccccccCCchhHHHHHHHHHHhcCccccccccCCCCCCCcccccCccccchHHHHHHHHHHHHHhhc
Q 005395 56 ILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAFIYWTLRFLR 135 (698)
Q Consensus 56 ~~a~~iRl~~~~~~~~~l~~~Dpyy~~r~~~~~~~~G~~~~~~~fD~~~~yP~G~~v~~~~~P~l~~~~a~i~~~l~~~g 135 (698)
.+.+..|+....-..... ..|.+|++--.-...-+|. ++.+| |.... |.-|+. .+|.+.... ++.++.++
T Consensus 4 ~~ll~~R~~~a~~~~~~f-~pDE~fq~~E~ah~~~~g~-g~~tW-E~~~~-~~iRS~---~~p~i~~~~---~~~~~~~~ 73 (418)
T PF03901_consen 4 LLLLAFRLLNALFPQTSF-HPDEYFQSLEPAHRLVFGY-GYLTW-EWSPF-PGIRSW---LFPLIFAIP---YKLLARLG 73 (418)
T ss_pred HHHHHHHHHHHHhccCCC-CCCcccccHHhhhhhhcCc-cchhh-hhccC-CCCCCh---HHHHHHHHH---HHHHHHHh
Confidence 445567776643222222 5899998733322223443 22333 22211 222333 566665443 34333343
Q ss_pred --chhhHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhccCCCCchhHHHHHHHHHHHHHHHH
Q 005395 136 --FAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVK 213 (698)
Q Consensus 136 --~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~~~~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~lf~~~l~~~~~~~ 213 (698)
.+.....+.+.+..++++++-...|...++..|++++..+.++.+.++...+ ...+.-.++++..+.++.++++.+
T Consensus 74 ~~~~~~~~~~~Rl~~~~~s~~~d~~~~~~~~~~~~~~~a~~~l~l~~~s~~~~~--~~~Rtlsns~e~~l~~~al~~~~~ 151 (418)
T PF03901_consen 74 LDSPWAVFYAPRLVLALLSALSDYYLYRLVKRLFGSSVALWALLLSLFSWFMFY--YSSRTLSNSFETILVLLALYLWLR 151 (418)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhHHHhhhHHHH--hhcccCccHHHHHHHHHHHHHHHH
Confidence 3334677888999999999999999988888888889899999888888544 223445588888888888888887
Q ss_pred HHhhc-----cHHHHHHHHHHHHHHHHhhhhhHHH
Q 005395 214 AVNTG-----SLAWALASAFGYFYMVSAWGGYVFI 243 (698)
Q Consensus 214 a~~~~-----~~~~~~lagl~~~l~~~~w~g~~~~ 243 (698)
..+++ +.......++..+..+..|+....+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rpt~~~~ 186 (418)
T PF03901_consen 152 SLSRSNSSSSSKRYLLAIGLLAGLAVFFRPTSALF 186 (418)
T ss_pred hhccCCCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 54321 1223444455555555667664443
No 17
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=6e-05 Score=86.50 Aligned_cols=183 Identities=17% Similarity=0.241 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCCchhHHHHHHHHHHhcCccccccccCCCCCCCcccccCccccchHHHHHHHHH
Q 005395 49 SILGLVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAFIY 128 (698)
Q Consensus 49 ~~l~~i~~~a~~iRl~~~~~~~~~l~~~Dpyy~~r~~~~~~~~G~~~~~~~fD~~~~yP~G~~v~~~~~P~l~~~~a~i~ 128 (698)
+..+++.++++.+|..-......++ +|.=.....+.++++|-+ .||- ++|.|. ++.+...
T Consensus 25 ~~~~~lt~ls~~~R~~~i~~~~~VV--fdE~hfgkFaS~Yl~~~~-----~fDv--HPPL~k-----------ml~al~~ 84 (699)
T COG1928 25 LGPVLLTVLSFIVRFWKIGNPNTVV--FDEAHFGKFASYYLNGTP-----FFDV--HPPLGK-----------MLIALVG 84 (699)
T ss_pred eehhHHHHHHHHHHHHhcCCCCeEE--EeeeeeccchHHhhcCCc-----cccc--CCcHHH-----------HHHHhhh
Confidence 4556788899999998754433332 444222344445555532 2453 233331 2333333
Q ss_pred HHHHhhc---ch---------hhHHHHHHHHhhHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHhhhhhhhccCCCCc
Q 005395 129 WTLRFLR---FA---------VHIREVCVLTAPFFASNTTVVAYFFGKEIWD-SGAGLVAAAFIAICPGYISRSVAGSYD 195 (698)
Q Consensus 129 ~~l~~~g---~~---------~~~~~v~~~~p~i~~~l~vi~~yll~~~l~~-~~agl~Aall~ai~p~~~~Rs~~G~~D 195 (698)
++.+.-| .. ...+...+++++++|+++++++|+++|++.- +.++.+++++.++=-+++.-|. ++-
T Consensus 85 ~L~g~~g~f~f~~~g~~~~~~~~~y~~mR~f~A~lgsl~vpl~y~t~r~~~~s~l~~~l~~llv~~dn~~~t~sR--~IL 162 (699)
T COG1928 85 GLEGYDPPFDFQLIGLTEYPFGYNYVGMRFFNALLGSLTVPLVYLIARRIGYSRLVAALAGLLVAFDNSFVTESR--FIL 162 (699)
T ss_pred hhhccCCCcccccCCcccccCCCChHHHHHHHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHhccchhhhhH--HHH
Confidence 3321111 00 0145578999999999999999999999965 4589999999988877765443 345
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhc-----cHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHH
Q 005395 196 NEGVAIFALLLTFYLFVKAVNTG-----SLAWALASAFGYFYMVSA-WGGYVFIINLIPLYVLVL 254 (698)
Q Consensus 196 ~e~l~lf~~~l~~~~~~~a~~~~-----~~~~~~lagl~~~l~~~~-w~g~~~~~~~i~l~~~~~ 254 (698)
-|...+|++..+.|+++|..+.+ .+.+.+++|+++|+.+.+ |-| .|..+.++++++..
T Consensus 163 LDs~LlfF~~~~~y~~~r~~~~~p~s~~w~~~Ll~tGisLGcaiS~KwvG-lft~~~vgl~~v~~ 226 (699)
T COG1928 163 LDSFLLFFIVAAAYCFLRFHRQQPFSRRWLKWLLLTGISLGCAISVKWVG-LFTTGVVGLLAVYE 226 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHhcceeeeEEEeeehh-HHHHHHHHHHHHHH
Confidence 58889999999999999976543 357788999999887743 444 24445555555543
No 18
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=97.65 E-value=0.0015 Score=64.23 Aligned_cols=112 Identities=20% Similarity=0.199 Sum_probs=78.4
Q ss_pred cchHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHhcch--------------hHHHHHHHHHHHh
Q 005395 117 YPGLMVTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDS--------------GAGLVAAAFIAIC 182 (698)
Q Consensus 117 ~P~l~~~~a~i~~~l~~~g~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~~~--------------~agl~Aall~ai~ 182 (698)
||....+.-+ ..+ +....++-...-++.++.+++++..+|+..+++.++ .+|+++|+..+++
T Consensus 20 yPlf~llg~l-f~~---lp~~~~ia~~vNl~Sal~sA~tv~~l~~~~~~l~~~~~~~~~~~~~~~~~~a~lv~al~fafS 95 (178)
T PF11028_consen 20 YPLFTLLGRL-FSL---LPDFGNIAWRVNLLSALSSALTVLFLFWSITRLLRKLPEEPSTAQTIAILGAGLVGALAFAFS 95 (178)
T ss_pred cHHHHHHHHH-HHH---cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhh
Confidence 6644444333 333 221224444456889999999999999999999777 6999999999999
Q ss_pred hhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHH
Q 005395 183 PGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNT----GSLAWALASAFGYFYMV 234 (698)
Q Consensus 183 p~~~~Rs~~G~~D~e~l~lf~~~l~~~~~~~a~~~----~~~~~~~lagl~~~l~~ 234 (698)
+.+-..++-+. -..+..++..+.+|+.+|-.++ ++-.|.++.++..|+..
T Consensus 96 ~sfW~~Av~aE--VYal~~l~~al~~~l~l~w~~~~~~~~~~r~l~l~afl~GLs~ 149 (178)
T PF11028_consen 96 DSFWFQAVEAE--VYALSSLFTALLLWLLLKWEREADEPRSDRWLLLIAFLCGLSL 149 (178)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHH
Confidence 99887664322 2456778888888888886554 44566666666666655
No 19
>COG5305 Predicted membrane protein [Function unknown]
Probab=97.25 E-value=0.0064 Score=69.26 Aligned_cols=114 Identities=19% Similarity=0.274 Sum_probs=89.1
Q ss_pred cccCCCCCCCcccccC---------ccccchHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Q 005395 98 NWFDSESWYPLGRIIG---------GTLYPGLMVTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWD 168 (698)
Q Consensus 98 ~~fD~~~~yP~G~~v~---------~~~~P~l~~~~a~i~~~l~~~g~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~~ 168 (698)
-|+|...-+|.|..+. ....|++.++.+=+... .|| +.+.+.+-+|.+++++++..+|-++|++.+
T Consensus 69 l~l~~~~~~~~s~~~~~~v~~lll~~~~~~PLYfll~h~W~~--lF~---~s~~~~Rsls~L~~~~ai~~~y~l~r~l~~ 143 (552)
T COG5305 69 LWLDEFQSISASKTVIETVLSLLLELLVHPPLYFLLAHFWMA--LFG---NSLLASRSLSALLSALAIPLVYWLGRELFG 143 (552)
T ss_pred hhhhhcccCCCcccccchHHHHHhccCCCCCeeehHHHHHHH--Hhc---hHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888887432 23456665544333322 256 577899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhhc
Q 005395 169 SGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNTG 218 (698)
Q Consensus 169 ~~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~lf~~~l~~~~~~~a~~~~ 218 (698)
++.|++|+.++|++|.++..+.- ..+-.+.+...+....+.+++.+..
T Consensus 144 ~~~a~la~~~~AisP~~i~~~qe--~R~y~L~~~~~lis~~~Ll~ai~~~ 191 (552)
T COG5305 144 STTALLAAALMAISPFHIFYSQE--ARSYALAVATTLISATLLLRAIRLP 191 (552)
T ss_pred hhHHHHHHHHHccChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCc
Confidence 99999999999999999886643 4467788888888899999998753
No 20
>COG4346 Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.011 Score=62.50 Aligned_cols=174 Identities=17% Similarity=0.130 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHhhhc-ccccccc-CCchhHHHHHHHHH----Hh-cCcccccc-ccCCCCC--------------
Q 005395 48 VSILGLVYILAFITRLFSVL-RYESMIH-EFDPYFNYRTTLFL----TE-KGFYEFWN-WFDSESW-------------- 105 (698)
Q Consensus 48 ~~~l~~i~~~a~~iRl~~~~-~~~~~l~-~~Dpyy~~r~~~~~----~~-~G~~~~~~-~fD~~~~-------------- 105 (698)
.+.+++...+...+|-+|.. .+..... =.|.+++...+++. .| |++.+++. --||+++
T Consensus 28 ~~vial~~~i~~~v~~yp~~~~f~~~~gyIsdEv~y~~~arn~i~~~~~~~~~~~yft~t~~p~v~~~i~~e~~k~~~~~ 107 (438)
T COG4346 28 VVVIALGALIEKSVREYPTIPEFSPKLGYISDEVWYVTYARNIIWEFAERNMLKEYFTVTPFPGVNYTIPVENYKIFAVE 107 (438)
T ss_pred HHHHHHHHHHhhhHhhCCCCCccCccCCcceeeEeechhHhHHHHHHHHhhhccceEEecCCcccceecchhhhhhhhHh
Confidence 34444555667778888742 2211111 25666666666652 22 33322221 2256666
Q ss_pred --------------CCcccccC---ccccchHH-HHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q 005395 106 --------------YPLGRIIG---GTLYPGLM-VTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIW 167 (698)
Q Consensus 106 --------------yP~G~~v~---~~~~P~l~-~~~a~i~~~l~~~g~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~ 167 (698)
||+-..+- .+..|+|- +.+|+..-+. .- .+ .-++-..+.|+++++.+|+.++++.
T Consensus 108 ~~~~~~~~i~~Gy~YPdeeni~~Y~N~EHPpLgKyIiAl~ml~~---d~--Pl--~WRiPsiIe~~liliiv~~~~~ki~ 180 (438)
T COG4346 108 LKGEVSIIIRPGYKYPDEENIHKYYNTEHPPLGKYIIALGMLIV---DK--PL--YWRIPSIIEGALILIIVYFVAYKIA 180 (438)
T ss_pred hccccceEeecCCCCCchhhHHhhcCcCCCcHHHHHHHHHHHHh---cC--Cc--eeeccHHHhhhHHHHHHHHHHHHHh
Confidence 77765553 67889996 5555444331 11 11 2445556789999999999999997
Q ss_pred c-hhHHHHHHHHHHHhhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhh
Q 005395 168 D-SGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNTGSLAWALASAFGYFYMVSAW 237 (698)
Q Consensus 168 ~-~~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~lf~~~l~~~~~~~a~~~~~~~~~~lagl~~~l~~~~w 237 (698)
+ ..+|++||+++|+-|....-+...-.|-| .-||..+..||.. ++| .+ .+|+++|+.+.+-
T Consensus 181 ~~~la~~~aA~~~alDp~l~amg~VAMLDIh--vaFFtaL~~~fl~---~~R-~l---~sgiAlGLAAs~K 242 (438)
T COG4346 181 RSPLAGLIAALLAALDPLLRAMGGVAMLDIH--VAFFTALFMYFLA---NDR-PL---WSGIALGLAASVK 242 (438)
T ss_pred cCchHHHHHHHHHhhCcHHHHhcchhHHHHH--HHHHHHHHHHHHh---cCC-ee---hHHHHHHHHHHHh
Confidence 5 78999999999999986554433334444 3555555555442 233 32 3567777776655
No 21
>PF11847 DUF3367: Domain of unknown function (DUF3367); InterPro: IPR021798 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 667 to 694 amino acids in length.
Probab=96.50 E-value=2.6 Score=49.35 Aligned_cols=112 Identities=16% Similarity=0.114 Sum_probs=77.5
Q ss_pred ccccchHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHhhhhhhhccC
Q 005395 114 GTLYPGLMVTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEI--WDSGAGLVAAAFIAICPGYISRSVA 191 (698)
Q Consensus 114 ~~~~P~l~~~~a~i~~~l~~~g~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l--~~~~agl~Aall~ai~p~~~~Rs~~ 191 (698)
|.+||.-. ++.+.+.+|.|. ..+=+++=.++-++.-.-++.+++++ ..+...++||+..+++|-.+.. .
T Consensus 53 GYLFP~G~-----Ff~l~~~lglP~--Wi~QRLWwallL~vaf~G~~rLa~~L~igs~~~r~~Aa~~YaLsPr~Ltt--l 123 (680)
T PF11847_consen 53 GYLFPMGP-----FFALGDLLGLPD--WITQRLWWALLLTVAFWGALRLARALGIGSPASRVLAAVAYALSPRVLTT--L 123 (680)
T ss_pred eeeccchH-----HHHHhhhccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhChHHHHH--H
Confidence 34566533 344555567652 22334444455555666778888988 4566889999999999998874 6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHH
Q 005395 192 GSYDNEGVAIFALLLTFYLFVKAVNT--GSLAWALASAFGYFYMV 234 (698)
Q Consensus 192 G~~D~e~l~lf~~~l~~~~~~~a~~~--~~~~~~~lagl~~~l~~ 234 (698)
|.+--|.+-..+.-..+.-+++..+. ..+..++.++++..+|-
T Consensus 124 g~iSse~lP~al~PWvLlPlv~~~r~~~~~rr~aa~salaV~~mG 168 (680)
T PF11847_consen 124 GAISSETLPMALAPWVLLPLVRALRGRGSPRRAAARSALAVALMG 168 (680)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhccCcchhHHHHHHHHHHHHHh
Confidence 77888988888888888888888765 44567777777776654
No 22
>COG1287 Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]
Probab=96.35 E-value=1 Score=54.56 Aligned_cols=48 Identities=31% Similarity=0.504 Sum_probs=43.1
Q ss_pred cccchhHHHHHHHHHhcCCCCCee-Eeeccccchhh--hhcCceeeecCCC
Q 005395 541 RVIFDDYREAYFWLRQNTPPDAKV-MSWWDYGYQIT--AMGNRTVIVDNNT 588 (698)
Q Consensus 541 ~~i~~dw~eAl~WLr~NTp~~s~V-mSWWDYGy~I~--~~a~R~tvaDgnt 588 (698)
+.....|..++.|+|+|+.+...+ .+|||+||||+ +-++|+..+|+..
T Consensus 474 ~~~~~~~~~a~p~~~~~~~~~~~~~~~w~d~~~wi~~~~~~~~~~~~~~~~ 524 (773)
T COG1287 474 PVLIVLASLALPWLRNSTNPSDVTGAAWWDAGYWIRSSTPDNSLDYADGYE 524 (773)
T ss_pred HHHHHHHHHHhHHHHhccccccccccccccccceEEeecCCCCcccccccC
Confidence 456788999999999999999999 99999999999 8888888888765
No 23
>PF04188 Mannosyl_trans2: Mannosyltransferase (PIG-V)); InterPro: IPR007315 This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI [], [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=96.25 E-value=0.2 Score=56.55 Aligned_cols=96 Identities=14% Similarity=0.163 Sum_probs=67.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHhhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhhc
Q 005395 140 IREVCVLTAPFFASNTTVVAYFFGKEIW-DSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNTG 218 (698)
Q Consensus 140 ~~~v~~~~p~i~~~l~vi~~yll~~~l~-~~~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~lf~~~l~~~~~~~a~~~~ 218 (698)
+..++..+..+...++....|.++++.. +++.+..|+++.+++|+-+.-| ++| +|++..++....+++..+. +
T Consensus 111 l~~~~~~vs~~~~~la~~~L~~l~~~~~~~~~~a~~a~ll~~~~PasiF~s-a~Y--sEslf~~lsf~gl~~~~~~---~ 184 (443)
T PF04188_consen 111 LLNSGILVSNVAFLLAAVALYRLTRRVFKSRKLALLAALLFIFSPASIFLS-APY--SESLFALLSFAGLYLLERG---R 184 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHccHHHHhh-cCc--cHHHHHHHHHHHHHHHHhc---c
Confidence 3444556667777889999999999875 6789999999999999976654 344 6998877777777766543 2
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 005395 219 SLAWALASAFGYFYMVSAWGGYVFIIN 245 (698)
Q Consensus 219 ~~~~~~lagl~~~l~~~~w~g~~~~~~ 245 (698)
...+|+..++...+.....+..+
T Consensus 185 ----~~~a~~~~~la~~~RsnGll~~~ 207 (443)
T PF04188_consen 185 ----WWLAGLLFALATLTRSNGLLLAG 207 (443)
T ss_pred ----HHHHHHHHHHHHHHHhhHHHHHH
Confidence 23355556666666655444433
No 24
>COG5617 Predicted integral membrane protein [Function unknown]
Probab=96.18 E-value=0.44 Score=55.82 Aligned_cols=96 Identities=16% Similarity=0.011 Sum_probs=59.9
Q ss_pred ccchHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHhhhhhhhccCCCC
Q 005395 116 LYPGLMVTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIW-DSGAGLVAAAFIAICPGYISRSVAGSY 194 (698)
Q Consensus 116 ~~P~l~~~~a~i~~~l~~~g~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~-~~~agl~Aall~ai~p~~~~Rs~~G~~ 194 (698)
.||++.+.+.+....+ .|.++..+.++.++.- +.....|++.|... ....++++|++.-.+|.++--+-.+-.
T Consensus 69 YypPl~Yli~aal~~l--~~d~~~t~~v~~~la~----llG~~~~~~~r~~g~t~~ia~I~alL~ltsp~~l~vlf~EGn 142 (801)
T COG5617 69 YYPPLSYLIGAALNFL--LGDVVTTYAVFLMLAF----LLGAGGWLLWRLRGRTGFIALISALLWLTSPENLKVLFIEGN 142 (801)
T ss_pred ecCcHHHHHHHHHHHh--hcChhHHHHHHHHHHH----HHHHHHHHHHHhhccccchHHHHHHHHHhChhheEEEEecCc
Confidence 3889986554444432 3555556666665544 44555666665553 346899999999999998764432222
Q ss_pred chhHHHHHHHHHHHHHHHHHHhh
Q 005395 195 DNEGVAIFALLLTFYLFVKAVNT 217 (698)
Q Consensus 195 D~e~l~lf~~~l~~~~~~~a~~~ 217 (698)
=.-+..+-+..+.++++.+.++.
T Consensus 143 iP~v~~i~f~pl~l~~l~~~~~~ 165 (801)
T COG5617 143 IPRVLAIGFGPLALGLLERFLER 165 (801)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHh
Confidence 23455666666677777777753
No 25
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=95.69 E-value=0.61 Score=52.83 Aligned_cols=116 Identities=15% Similarity=0.174 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHhhhhhhhccCCCCchh
Q 005395 119 GLMVTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIW-DSGAGLVAAAFIAICPGYISRSVAGSYDNE 197 (698)
Q Consensus 119 ~l~~~~a~i~~~l~~~g~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~-~~~agl~Aall~ai~p~~~~Rs~~G~~D~e 197 (698)
++.++.+-+|++ ++.+ ....+++.++-+++++++|.++||.. +++.|++.++...++|+...-.. +|=|
T Consensus 44 Pil~ll~Ply~l---~Ps~----~tLli~Qal~la~~~~pl~~lar~~~~~~~~a~~~~~~ylL~p~~~~~~~---~dFH 113 (449)
T PF09852_consen 44 PILYLLAPLYRL---FPSP----LTLLIVQALLLALGAIPLYRLARRRLLSRRLALLIALAYLLSPGLQGANL---FDFH 113 (449)
T ss_pred HHHHHHHHHHHH---hCCH----HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhHHHHhhhh---CCCc
Confidence 355555668887 4432 34668889999999999999999997 78899999999999999775433 5534
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 005395 198 GVAIFALLLTFYLFVKAVNTGSLAWALASAFGYFYMVSAWGGYVFIINLIPL 249 (698)
Q Consensus 198 ~l~lf~~~l~~~~~~~a~~~~~~~~~~lagl~~~l~~~~w~g~~~~~~~i~l 249 (698)
....+.+++.+.++ +++++++...+++. .+.+..-+...+.+..+++
T Consensus 114 ~~~~avPll~~~~~--~~~~~r~~~~~~~~---ll~llvKEd~~l~v~~~gl 160 (449)
T PF09852_consen 114 PVAFAVPLLLWALY--ALERRRWRLFILWA---LLLLLVKEDLGLTVAGIGL 160 (449)
T ss_pred HHHHHHHHHHHHHH--HHHhCcHHHHHHHH---HHHHHHHhhHHHHHHHHHH
Confidence 44333333333322 44556665554433 3345566665554444433
No 26
>PF09913 DUF2142: Predicted membrane protein (DUF2142); InterPro: IPR018674 This family of conserved hypothetical proteins has no known function.
Probab=95.35 E-value=2.5 Score=46.70 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=72.4
Q ss_pred cchHHHHHHHH-HHHHHhhcch-hhHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhccCCCC
Q 005395 117 YPGLMVTAAFI-YWTLRFLRFA-VHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSY 194 (698)
Q Consensus 117 ~P~l~~~~a~i-~~~l~~~g~~-~~~~~v~~~~p~i~~~l~vi~~yll~~~l~~~~agl~Aall~ai~p~~~~Rs~~G~~ 194 (698)
||++.++...+ .++-+.+|.+ ......+++.-.++.++.+.....+.++ ++ ..++++++.|..++. ++.+
T Consensus 95 y~p~~Ylp~alGi~ig~ll~l~~~~~~~l~Rl~nll~~~~l~~~Ai~~~p~--~k----~l~~~i~l~Pm~~~~--~aS~ 166 (389)
T PF09913_consen 95 YPPLYYLPQALGIWIGRLLGLSVLVMYYLGRLFNLLLYALLVYLAIKLAPR--GK----WLLALIALLPMTLFQ--AASV 166 (389)
T ss_pred CCcHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcch--hH----HHHHHHHHHHHHHHH--HHhc
Confidence 88887654444 3333335543 3456788888877766655444444433 22 236777889997774 3567
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHhhhhh
Q 005395 195 DNEGVAIFALLLTFYLFVKAVNTG--SLAWALASAFGYFYMVSAWGGY 240 (698)
Q Consensus 195 D~e~l~lf~~~l~~~~~~~a~~~~--~~~~~~lagl~~~l~~~~w~g~ 240 (698)
..|++...+..+.++++++..+++ +....++.+++.++.+.+...|
T Consensus 167 s~D~~~~~~~~l~~a~~l~~~~~~~~~~~~~~~l~v~~~ll~~~K~~y 214 (389)
T PF09913_consen 167 SYDGLIIALAFLFIALLLRLYRKKKITRRDLILLGVLAVLLALSKPPY 214 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888853333 2334566667776777777444
No 27
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=95.31 E-value=10 Score=46.48 Aligned_cols=80 Identities=13% Similarity=0.021 Sum_probs=53.3
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcc-h--hHHHHHHHHHHHhhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHH
Q 005395 139 HIREVCVLTAPFFASNTTVVAYFFGKEIWD-S--GAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAV 215 (698)
Q Consensus 139 ~~~~v~~~~p~i~~~l~vi~~yll~~~l~~-~--~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~lf~~~l~~~~~~~a~ 215 (698)
.+..+..++..+=-.++.+.+|+..|+... + .+.+++|++.+++-..+.... ..- ..-.+.++.++++..-|.+
T Consensus 87 ~~~~~~~~~~~lk~~lag~~~~~~l~~~~~~~~~~~~~i~s~~Yafsg~~~~~~~--~~~-fld~~i~lPL~llgie~~~ 163 (843)
T PF09586_consen 87 QMPYAILLLIILKIGLAGLFFYLYLRKFKKSRSDWAALIGSLLYAFSGYVIYYSF--NIM-FLDAMILLPLLLLGIERLL 163 (843)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHhh--hHH-HHHHHHHHHHHHHHHHHHH
Confidence 455566666666677888899999999864 5 799999999998876555321 111 1113444455566667788
Q ss_pred hhccHH
Q 005395 216 NTGSLA 221 (698)
Q Consensus 216 ~~~~~~ 221 (698)
++|+..
T Consensus 164 ~~~k~~ 169 (843)
T PF09586_consen 164 KEKKWW 169 (843)
T ss_pred hcCCcc
Confidence 887753
No 28
>PF04922 DIE2_ALG10: DIE2/ALG10 family; InterPro: IPR007006 Members of this entry are glycosyltransferases, belonging to the ALG10 family. The majority of the members are annotated as alpha-1,2 glucosyltransferas. The ALG10 protein from Saccharomyces cerevisiae (Baker's yeast) encodes the alpha-1,2 glucosyltransferase of the endoplasmic reticulum. This protein has been characterised in Rat as potassium channel regulator 1 [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane
Probab=94.23 E-value=1.7 Score=47.92 Aligned_cols=115 Identities=21% Similarity=0.194 Sum_probs=68.2
Q ss_pred CchhHHHHHHHHHHhcCccccccccCCCCCCCcccccCccccchHHHHHHH-HHHHHHhhcchhhHHHHHHHHhhHHHH-
Q 005395 76 FDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAF-IYWTLRFLRFAVHIREVCVLTAPFFAS- 153 (698)
Q Consensus 76 ~Dpyy~~r~~~~~~~~G~~~~~~~fD~~~~yP~G~~v~~~~~P~l~~~~a~-i~~~l~~~g~~~~~~~v~~~~p~i~~~- 153 (698)
-|.-||.+++|.+-++-+ ..| ||.- |..|||..++.+ +.......+. +...+.+.+..+++.
T Consensus 9 mDEiFHipQaq~YC~g~f---~~W-DpKI----------TTpPGLYlls~~~l~~~~~~~~~--~~~~~LR~~N~l~~~~ 72 (379)
T PF04922_consen 9 MDEIFHIPQAQAYCRGRF---TEW-DPKI----------TTPPGLYLLSVAALFPGSWFFGC--SSLSVLRSTNLLFALV 72 (379)
T ss_pred ccchhhhHHHHHHHhchh---hhh-CCcc----------CCCchHHHHHHHHHhhHHHhhcc--cchHHHHHHHHHHHHH
Confidence 588999999998877643 233 6652 235888876655 2222111232 233346777776666
Q ss_pred HHHHHHHHHHHHhc--chhHHHHHHHHHHHhhhhhhhccCCCCchhHHHHHHHHHHH
Q 005395 154 NTTVVAYFFGKEIW--DSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTF 208 (698)
Q Consensus 154 l~vi~~yll~~~l~--~~~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~lf~~~l~~ 208 (698)
.....++-.-+... .+......|+-++..|....-| +-+=||...+++.+++.
T Consensus 73 ~~~~l~~~~~~~~~~~~~~~~~~~a~~ialfPllfFFs--fLYYTDv~St~~VL~~y 127 (379)
T PF04922_consen 73 VLPWLIYRILRFLNPRRSRKAILSALNIALFPLLFFFS--FLYYTDVWSTTFVLLMY 127 (379)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHhh--HHHHhcHHHHHHHHHHH
Confidence 22222333233222 1246677888899999966645 33557888888776665
No 29
>COG5650 Predicted integral membrane protein [Function unknown]
Probab=93.84 E-value=0.21 Score=56.11 Aligned_cols=179 Identities=17% Similarity=0.220 Sum_probs=96.0
Q ss_pred ccCCchhHHHHHHHHHHhcCccccccccCCCCCCCcccccCccccchHHHHHHHHHHHHHhhcch-hhHHHHHHHHhhHH
Q 005395 73 IHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAFIYWTLRFLRFA-VHIREVCVLTAPFF 151 (698)
Q Consensus 73 l~~~Dpyy~~r~~~~~~~~G~~~~~~~fD~~~~yP~G~~v~~~~~P~l~~~~a~i~~~l~~~g~~-~~~~~v~~~~p~i~ 151 (698)
.|++|||+.+-+.+-...+-++. + .+-|++|-.+-.-.||++.... +.| ....+...-++++.
T Consensus 114 vh~~~P~~r~~ms~af~y~~yPv----~--~~~y~~~~~v~~~~Y~~L~~ll----------~lP~~~ef~~~f~V~AF~ 177 (536)
T COG5650 114 VHGFDPYVRYNMSKAFRYMHYPV----L--GTPYQTGGYVIYFSYPGLSALL----------FLPVLFEFNPFFKVLAFL 177 (536)
T ss_pred ecCCCccchhhhhhhheeEeecc----c--cCcccccceEEEEEecchhhhc----------cCccccccchhhhHHHHH
Confidence 58899999877765433332221 1 2566777555444688886532 112 11112233445555
Q ss_pred HHHHHHHHHHHH-HHhcchhHHHHHHHHHHHhhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 005395 152 ASNTTVVAYFFG-KEIWDSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNTGSLAWALASAFGY 230 (698)
Q Consensus 152 ~~l~vi~~yll~-~~l~~~~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~lf~~~l~~~~~~~a~~~~~~~~~~lagl~~ 230 (698)
.++..+.+.... +++.+. +.+.+.+.+.+| ++.-+..+-. |.+..|+++.+..+ |.++ .+||+++
T Consensus 178 ~A~~~l~~i~~~r~gl~~~--~~~~valv~as~-~v~f~v~~~~--DtI~~ffla~a~v~-----r~rP----~lAGvl~ 243 (536)
T COG5650 178 LALIWLLVIYFIRKGLAGS--RVLDVALVAASP-LVGFAVFTVF--DTIWAFFLAAALVC-----RGRP----KLAGVLI 243 (536)
T ss_pred HHHHHHHHHHHHHhccccc--ceeeeeeeeccc-eEEEEEecch--hHHHHHHHHHHHHh-----cCCc----hHHHHHH
Confidence 555556665555 444443 445566667788 5554555544 56667777666554 3343 4567777
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhccccc
Q 005395 231 FYMVSAWGGYVFIINLIPLYVLVLLITGRYSMRLYVAYNCMYVLGMLLAMQIRFVGF 287 (698)
Q Consensus 231 ~l~~~~w~g~~~~~~~i~l~~~~~~~~~r~~~~~~~~~s~~~~v~t~l~~~~p~~g~ 287 (698)
|+..+.-.- +.+ + +..+++++.+.+..+....+..+.++. .+....|++=.
T Consensus 244 Gls~a~K~~-P~I---v-l~pll~~~~keyg~~~a~~f~~~aa~t-~lLvN~PfiI~ 294 (536)
T COG5650 244 GLSSAFKQI-PLI---V-LPPLLYLIYKEYGLRPAIKFIATAAIT-WLLVNLPFIIL 294 (536)
T ss_pred HHHHHhhcC-chh---h-HHHHHHHHHHhcCcchHHHHHHHHHHH-HHHHcCceEEe
Confidence 776654422 211 1 222234455666666666665555443 33456666533
No 30
>KOG4587 consensus Predicted membrane protein [Function unknown]
Probab=92.11 E-value=1.7 Score=48.23 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=47.6
Q ss_pred ccchhHHHHHHHHHhcCCCCCeeEeeccccchhhhhcCceeeecCCCCCchhhhHHHH------hhc-CCHHHHHHHHHh
Q 005395 542 VIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQITAMGNRTVIVDNNTWNNTHIATVGR------AMS-SYEDEAYEIMRS 614 (698)
Q Consensus 542 ~i~~dw~eAl~WLr~NTp~~s~VmSWWDYGy~I~~~a~R~tvaDgnt~n~~~i~~vg~------~la-s~e~~A~~il~~ 614 (698)
.-+||-.+-++|+|.||.+|++..--=|-=--..--+.||.+ |.. .-++.+.-.+ +.+ +.-+|-++.+.+
T Consensus 460 ~Sn~dqe~l~eWIk~nTk~DAVFAG~mp~ma~VkLttlRPIV--NHp-HyE~~gireRT~~VYSmySrk~~~ev~~~~~~ 536 (605)
T KOG4587|consen 460 KSNDDQESLLEWIKLNTKRDAVFAGPMPIMATVKLTTLRPIV--NHP-HYEMRGIRERTEHVYSMYSRKQSSEVYNQCAQ 536 (605)
T ss_pred cCCCCHHHHHHHHHhcCcccceeeccCceeeEEeeeeccccc--CCc-hhhhhhHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 457889999999999999999733211111112233556666 211 1222222121 344 356788999999
Q ss_pred cCCcEEEE
Q 005395 615 LDVDYVLV 622 (698)
Q Consensus 615 l~v~YVlv 622 (698)
++++|.++
T Consensus 537 lkvnY~i~ 544 (605)
T KOG4587|consen 537 LKVNYLII 544 (605)
T ss_pred hCCcEEEE
Confidence 99999887
No 31
>PF02516 STT3: Oligosaccharyl transferase STT3 subunit; InterPro: IPR003674 N-linked glycosylation is a ubiquitous protein modification, and is essential for viability in eukaryotic cells. A lipid-linked core-oligosaccharide is assembled at the membrane of the endoplasmic reticulum and transferred to selected asparagine residues of nascent polypeptide chains by the oligosaccharyl transferase (OTase) complex []. This family consists of the oligsacharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosccharyl transferase (OTase) complex of proteins and is required for its activity [].; GO: 0004576 oligosaccharyl transferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 3AAG_B 2ZAI_D 2ZAG_A 3RCE_A.
Probab=90.85 E-value=14 Score=41.94 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=29.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005395 411 LSDATIFIVMYGLTSMYFAGVMVRLILVATPAVCLISAIAVSATIKN 457 (698)
Q Consensus 411 ~~~~~lfll~~~~~~~~~s~~~~Rf~~~lap~~ailagi~~~~~~~~ 457 (698)
.++...++++|..++++....+.||. ++++++++ ++.....+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~rf~-~~~~p~~~---~~~~~~~~~ 373 (483)
T PF02516_consen 331 KRPILIFLLEWQPFGLYAYFFGFRFA-IFAVPVGI---IFLGLFLDY 373 (483)
T ss_dssp T-SSGGGGHHHHHHHHHHHHH-GGGG-GGGHHHHH---HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHhhH
Confidence 45666789999999999999999999 55555555 344444443
No 32
>COG3463 Predicted membrane protein [Function unknown]
Probab=85.66 E-value=53 Score=36.63 Aligned_cols=88 Identities=16% Similarity=0.235 Sum_probs=60.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHhhhhhhhccCCCCchhHHH--HHHHHHHHHHHHHHHhhc
Q 005395 142 EVCVLTAPFFASNTTVVAYFFGKEIWD-SGAGLVAAAFIAICPGYISRSVAGSYDNEGVA--IFALLLTFYLFVKAVNTG 218 (698)
Q Consensus 142 ~v~~~~p~i~~~l~vi~~yll~~~l~~-~~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~--lf~~~l~~~~~~~a~~~~ 218 (698)
.....++.++-++.+.++|+++||..+ ++-|++=+.+-.+.|.-.. .-.+|=|... +.+.++.+|++ +++
T Consensus 88 ~~Lll~Q~i~ials~~p~y~lA~eil~~E~~al~isilYll~p~i~g---i~~FDFH~m~~avp~~~~a~~f~----~r~ 160 (458)
T COG3463 88 ETLLLIQAIAIALSSLPIYLLAKEILNGEKEALAISILYLLNPYIEG---INLFDFHPMAFAVPLFLLAYYFL----KRK 160 (458)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcccHHHHHHHHHHHhchhccC---chhhhcchHHHHHHHHHHHHHHH----Hhc
Confidence 356788999999999999999999876 8999999999888888543 2357877654 44444445544 445
Q ss_pred cHHHHHHHHHHHHHHHHhhhh
Q 005395 219 SLAWALASAFGYFYMVSAWGG 239 (698)
Q Consensus 219 ~~~~~~lagl~~~l~~~~w~g 239 (698)
++.... +.+.+.+.+...
T Consensus 161 k~~l~l---i~lvlIl~tk~~ 178 (458)
T COG3463 161 KWKLFL---IFLVLILLTKED 178 (458)
T ss_pred chhHHH---HHHHHHHHHhcc
Confidence 554443 333444555555
No 33
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=83.51 E-value=77 Score=35.00 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=18.3
Q ss_pred CcccchhHHHHHHHHHhcCCCC
Q 005395 540 NRVIFDDYREAYFWLRQNTPPD 561 (698)
Q Consensus 540 ~~~i~~dw~eAl~WLr~NTp~~ 561 (698)
.+..+++=.++-.||++|.+++
T Consensus 258 ~~~~~~~Ev~ga~Wl~~~~~~~ 279 (367)
T PF09971_consen 258 YPYFNDSEVFGAKWLSKNRNNS 279 (367)
T ss_pred ceecchhhhhHHHHHHhcCCCC
Confidence 5666777789999999998876
No 34
>PF14264 Glucos_trans_II: Glucosyl transferase GtrII
Probab=81.01 E-value=64 Score=34.43 Aligned_cols=91 Identities=10% Similarity=0.127 Sum_probs=47.9
Q ss_pred HHhhHHHHH-HHHHHHHHHHHhc--chhHHHHHHHHHHHhhhhhhhccCCCCchh--HHHHHHHHHHHHHHHHHHhhccH
Q 005395 146 LTAPFFASN-TTVVAYFFGKEIW--DSGAGLVAAAFIAICPGYISRSVAGSYDNE--GVAIFALLLTFYLFVKAVNTGSL 220 (698)
Q Consensus 146 ~~p~i~~~l-~vi~~yll~~~l~--~~~agl~Aall~ai~p~~~~Rs~~G~~D~e--~l~lf~~~l~~~~~~~a~~~~~~ 220 (698)
++|.+++.+ ..+..+.+.|.+. ++....+.+.++...|.+.+--... +|.. ++++++..+.+++. ++++
T Consensus 50 pl~~iLs~~~la~s~~~~~~~~~~~~~~~~~l~~~~~~~~P~~~~~lsy~-~~s~~~~ls~~l~~la~~~~----~k~~- 123 (319)
T PF14264_consen 50 PLPQILSILFLALSAVLLVRLFDIKSSFISVLFSLLFISSPFFLENLSYR-FDSLPMALSLLLAVLAFYFL----KKSK- 123 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhHHHHHHHHHH-HccHHHHHHHHHHHHHHHHH----hhhh-
Confidence 455555553 3344444444443 2345667777778899876543322 3443 33555554444444 2233
Q ss_pred HHHHHHHHHHHHHHHhhhhhHH
Q 005395 221 AWALASAFGYFYMVSAWGGYVF 242 (698)
Q Consensus 221 ~~~~lagl~~~l~~~~w~g~~~ 242 (698)
...+++.+...++...++.+.-
T Consensus 124 ~~~~~~~~ll~~sl~~YQa~~~ 145 (319)
T PF14264_consen 124 IGFLISILLLVLSLGIYQASIN 145 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666666543
No 35
>COG5542 Predicted integral membrane protein [Function unknown]
Probab=77.25 E-value=27 Score=38.69 Aligned_cols=115 Identities=15% Similarity=0.116 Sum_probs=80.6
Q ss_pred ccchHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHhhhhhhhccCCCC
Q 005395 116 LYPGLMVTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDS-GAGLVAAAFIAICPGYISRSVAGSY 194 (698)
Q Consensus 116 ~~P~l~~~~a~i~~~l~~~g~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~~~-~agl~Aall~ai~p~~~~Rs~~G~~ 194 (698)
.+|.+.+....+.+++.. .....+..+..-+.-..+...+|.++|+.++. +.+-.|..+...+|..++-| +++=
T Consensus 95 ~~p~~~y~i~ii~~L~~~----~~~~l~~~l~s~~~~~~~ay~lY~~tk~~y~~~~~a~fa~i~~~~~P~~i~~s-~iw~ 169 (420)
T COG5542 95 YFPLYLYWIRIINKLLSS----LYFILAIKLFSNIADFVAAYFLYKITKLRYGLGSMARFATILVILSPSVIYNS-AIWG 169 (420)
T ss_pred cCchHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhheEEEEEeccHHHhhh-hHHh
Confidence 467777777777776422 23445666777777889999999999999875 66666666777788876643 4555
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhHH
Q 005395 195 DNEGVAIFALLLTFYLFVKAVNTGSLAWALASAFGYFYMVSAWGGYVF 242 (698)
Q Consensus 195 D~e~l~lf~~~l~~~~~~~a~~~~~~~~~~lagl~~~l~~~~w~g~~~ 242 (698)
.+|++..++..+.+|++. .++ .+-+++..++..+..+...+
T Consensus 170 ~teSlf~ll~~l~iyf~~----~k~---~~~a~~~faLa~l~Rsngi~ 210 (420)
T COG5542 170 QTESLFTLLSILAIYFFS----IKK---QIPALFFFALATLFRSNGIF 210 (420)
T ss_pred ccchHHHHHHHHHHHHHH----ccc---hhHHHHHHHHHHHhccchhH
Confidence 789998888888888764 232 24456777777787766544
No 36
>PHA01514 O-antigen conversion protein C
Probab=65.89 E-value=2.3e+02 Score=32.45 Aligned_cols=91 Identities=9% Similarity=0.067 Sum_probs=46.5
Q ss_pred HHhhHHHHH-HHHHHHHHHHHhcc--hhHHHHHHHHHHHhhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhhccHHH
Q 005395 146 LTAPFFASN-TTVVAYFFGKEIWD--SGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNTGSLAW 222 (698)
Q Consensus 146 ~~p~i~~~l-~vi~~yll~~~l~~--~~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~lf~~~l~~~~~~~a~~~~~~~~ 222 (698)
-+|.+++++ ..+....+.++.+. ...+.++++++-..|.+++- ..=.+|.-...+-+.+..+.+++. .+. +...
T Consensus 72 PLpliLs~~~ls~a~~~l~~~~f~~~~~~~~L~~~~l~~NPffLqN-LSYrfDsl~Malsv~lsi~~~~l~-~~~-~~~~ 148 (485)
T PHA01514 72 PLPLMLGIVILALALSCIREKLFGDDYITASLCFMMILANPFFIEN-LSYRYDSLTMCMSVAISIISSYVA-YQY-KPIN 148 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCHHHHhh-hhhccCcHHHHHHHHHHHHHHHHH-hcc-chHH
Confidence 456666663 33334555566543 34677777777778887763 333466644433333333332221 122 2333
Q ss_pred HHHHHHHHHHHHHhhhh
Q 005395 223 ALASAFGYFYMVSAWGG 239 (698)
Q Consensus 223 ~~lagl~~~l~~~~w~g 239 (698)
.+++++...+++..++.
T Consensus 149 ~~~~~il~~~~l~lYQ~ 165 (485)
T PHA01514 149 IIISSILTIAFLSLYQA 165 (485)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556655555666654
No 37
>PF09594 DUF2029: Protein of unknown function (DUF2029); InterPro: IPR018584 This is a putative transmembrane protein from prokaryotes. It is likely to be conserved between Mycobacterium species []. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=64.02 E-value=1.6e+02 Score=29.42 Aligned_cols=75 Identities=13% Similarity=0.046 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhcchh----HHHHHHHHHHHhhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Q 005395 153 SNTTVVAYFFGKEIWDSG----AGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNTGSLAWALASAF 228 (698)
Q Consensus 153 ~l~vi~~yll~~~l~~~~----agl~Aall~ai~p~~~~Rs~~G~~D~e~l~lf~~~l~~~~~~~a~~~~~~~~~~lagl 228 (698)
...+..++...|+...++ ....+.++.+..|. .. ..+.-..|.+..++....++++. |+|.. ++|+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~--~~~~gq~~~l~~~l~~~a~~~~~---r~r~~----~agv 101 (241)
T PF09594_consen 32 AALALAVRLLLRRLGRRKPPGRALLLALLLLAFPPV-LS--ALGLGQFDLLVAALLLLALLALR---RGRPW----LAGV 101 (241)
T ss_pred HHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHH-HH--HHHhccHHHHHHHHHHHHHHHHH---cCCCh----HHHH
Confidence 344455777777765431 23333345555665 22 22233456666666655555443 34433 4677
Q ss_pred HHHHHHHhh
Q 005395 229 GYFYMVSAW 237 (698)
Q Consensus 229 ~~~l~~~~w 237 (698)
++++.....
T Consensus 102 ~lgla~~~K 110 (241)
T PF09594_consen 102 LLGLAAAIK 110 (241)
T ss_pred HHHHHHHHH
Confidence 777666554
No 38
>KOG2647 consensus Predicted Dolichyl-phosphate-mannose-protein mannosyltransferase [General function prediction only]
Probab=57.68 E-value=50 Score=36.71 Aligned_cols=72 Identities=22% Similarity=0.267 Sum_probs=56.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHhhhhhhhccCCCCchhHHHHHHHHHHHHHHHHH
Q 005395 140 IREVCVLTAPFFASNTTVVAYFFGKEIW-DSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKA 214 (698)
Q Consensus 140 ~~~v~~~~p~i~~~l~vi~~yll~~~l~-~~~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~lf~~~l~~~~~~~a 214 (698)
+..+++.+..++-.++....|-++|.+. +++...-|+++..+.|+-+.-|. || .|.+.-++.+..++...+.
T Consensus 124 ~~i~~~~vn~~~f~la~~~Lyql~~~~~~~~k~s~~a~liFcfnPAsIF~ts-~Y--SEsLfa~~s~~Gi~~~~~~ 196 (444)
T KOG2647|consen 124 LLISAVLVNIFFFMLAAVALYQLTRIILHDPKISFYAALLFCFNPASIFLTA-GY--SESLFALFSFLGILFLEKG 196 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHhhhhheeEecchHhhhhH-Hh--hHHHHHHHHHHHHHHHhcC
Confidence 3446777777888899999999999985 56899999999999999877654 44 4888777777777766543
No 39
>COG5427 Uncharacterized membrane protein [Function unknown]
Probab=55.08 E-value=25 Score=39.03 Aligned_cols=91 Identities=26% Similarity=0.271 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCCCCeeEeecc---ccch--hhhhcCceeee-cCCC---CCchhhhH------HHHhhc-CCHHHHHHH
Q 005395 548 REAYFWLRQNTPPDAKVMSWWD---YGYQ--ITAMGNRTVIV-DNNT---WNNTHIAT------VGRAMS-SYEDEAYEI 611 (698)
Q Consensus 548 ~eAl~WLr~NTp~~s~VmSWWD---YGy~--I~~~a~R~tva-Dgnt---~n~~~i~~------vg~~la-s~e~~A~~i 611 (698)
+.|..||++|..-+-++-.-=| |||+ ....+.-|++. =.|| |...|-.. +-.+.+ .|++++.+|
T Consensus 555 Y~A~~WlQ~~r~G~Vi~Ea~~~dGaY~Y~~RVaA~TG~PtVIgWanHE~~WrR~~~~V~qR~KDVR~~YST~~~~K~~Ei 634 (684)
T COG5427 555 YAAARWLQDRRRGTVIVEAPGVDGAYTYQNRVAALTGVPTVIGWANHEANWRRSQAAVEQRVKDVRVVYSTTDAAKRAEI 634 (684)
T ss_pred HHHHHHHHhcCCCcEEEeccccCCccccccchhhccCCcceehhhhhhhhhcccHHHHHHHhhhhheeeecCcHHHHHHH
Confidence 6788999987554211111111 4443 33444444443 1121 33333222 112444 589999999
Q ss_pred HHhcCCcEEEEEeCCcccCCcchhhhHH
Q 005395 612 MRSLDVDYVLVVFGGVTGYSSDDINKFL 639 (698)
Q Consensus 612 l~~l~v~YVlv~~g~~~~~~~ddi~Kf~ 639 (698)
+++.||+||.+-....-.| +.|..||.
T Consensus 635 ~~KY~V~Yv~~G~~Er~~y-S~~~~KFE 661 (684)
T COG5427 635 LEKYDVTYVWVGPVERARY-SIPDLKFE 661 (684)
T ss_pred HHhcCceEEEEchHHhhhc-CCcccccc
Confidence 9999999999843322334 34556665
No 40
>PF10060 DUF2298: Uncharacterized membrane protein (DUF2298); InterPro: IPR018746 Members of this highly hydrophobic probable integral membrane family belong to two classes. In one, a single copy of the region modelled by the signatures in this entry represents essentially the full length of a strongly hydrophobic protein of about 700 to 900 residues (variable because of long inserts in some). The domain architecture of the other class consists of an additional N-terminal region, two copies of the region represented by this model, and three to four repeats of TPR, or tetratricopeptide repeat. The unusual species range includes several Archaea, several Chloroflexi, and Clostridium phytofermentans. An unusual motif YYYxG is present. The function is unknown.
Probab=44.29 E-value=5.4e+02 Score=29.46 Aligned_cols=101 Identities=11% Similarity=0.048 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhhhccccccccCCchhHHHHHHHHHHhcCccccccccCCCCCCCcccccCccccchHHHHHHHHHHHH
Q 005395 52 GLVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAFIYWTL 131 (698)
Q Consensus 52 ~~i~~~a~~iRl~~~~~~~~~l~~~Dpyy~~r~~~~~~~~G~~~~~~~fD~~~~yP~G~~v~~~~~P~l~~~~a~i~~~l 131 (698)
+..+++...+|.+.-.-+ +-|-+.++-..+-+.+... .+..|| ||+-|... -|=.-+++.+.+.++
T Consensus 60 ~~~F~~~~~~R~~~P~i~-----g~EK~MD~afl~ai~rs~~---lPP~Dp--WfAG~~in---YYY~G~~l~a~l~~L- 125 (473)
T PF10060_consen 60 LAAFLFFLWLRAFNPDIW-----GGEKFMDFAFLNAILRSPT---LPPYDP--WFAGGPIN---YYYFGHVLMAALAKL- 125 (473)
T ss_pred HHHHHHHHHHHHhCCccc-----cccchhhHHHHHHHHcCCC---CCCCCC--ccCCCccC---cccHHHHHHHHHHHH-
Confidence 345556667777642112 3344445555555555532 233454 34444332 122334566666666
Q ss_pred HhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh
Q 005395 132 RFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSG 170 (698)
Q Consensus 132 ~~~g~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~~~~ 170 (698)
.|.+ ...+--...+.+.++++...|-+++++..++
T Consensus 126 --tG~~--~~vayNLala~~~al~~~~a~~l~~~l~~~~ 160 (473)
T PF10060_consen 126 --TGVP--PEVAYNLALATLFALAFTGAFGLAYNLLARR 160 (473)
T ss_pred --HCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4543 4445667778889999999999999986554
No 41
>TIGR03459 crt_membr carotene biosynthesis associated membrane protein. This model represents a family of hydrophobic and presumed membrane proteins. The genes encoding these proteins are syntenically associated with (found proximal to) genes of carotene biosynthesis ususally including phytoene synthase (crtB), phytoene dehydrogenase (crtI) and geranylgeranyl pyrophosphate synthase (ispA).
Probab=42.42 E-value=5.7e+02 Score=29.22 Aligned_cols=145 Identities=12% Similarity=-0.023 Sum_probs=79.0
Q ss_pred ccCCchhHHHHHHHHHHhcCccccccccCCCCCCCcc------ccc------CccccchHHHHH-HHHHHHHHhhcchhh
Q 005395 73 IHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLG------RII------GGTLYPGLMVTA-AFIYWTLRFLRFAVH 139 (698)
Q Consensus 73 l~~~Dpyy~~r~~~~~~~~G~~~~~~~fD~~~~yP~G------~~v------~~~~~P~l~~~~-a~i~~~l~~~g~~~~ 139 (698)
+.+-|-|.+.-+-+. +.+|+.+ +..-|.. +.+ ..+-|+|+.... ..+..+ .|.+..
T Consensus 95 lfSrDvYsYlaqG~l-~~~G~dP-------Y~~gP~~~~~~~~~~v~~~W~~t~aPYGPl~l~i~~~v~~l---~g~~i~ 163 (470)
T TIGR03459 95 MMSRDVYSYLMQGAL-LRDGFDP-------YTVGAAANPGPLLDEVSPDWRNTTTPYGPLHLLVGQAITTV---TGDNVT 163 (470)
T ss_pred cccHHHHHHHHHHHH-HHcCCCc-------cccCCccCCchHhhhcCchhccCCCCCChHHHHHHHHHHHH---hCCCcH
Confidence 346788877777765 4677633 3332222 111 123578887543 334443 243322
Q ss_pred HHHHHHHHhhHHHH-HHHHHHHHHHHHhcc-hhHHHHHHHHHHHhhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 005395 140 IREVCVLTAPFFAS-NTTVVAYFFGKEIWD-SGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNT 217 (698)
Q Consensus 140 ~~~v~~~~p~i~~~-l~vi~~yll~~~l~~-~~agl~Aall~ai~p~~~~Rs~~G~~D~e~l~lf~~~l~~~~~~~a~~~ 217 (698)
.-.++.=+-.+.|. +++..+-.+.|++.. +.. |.-+.+..|-.+.. ..|-.-||.+.+.+++..+++..|.
T Consensus 164 ~~v~~~Rl~~l~g~~l~~w~~~rLar~~g~~~~~---AlWL~~~NPLviih-lvgg~HnealM~gl~l~gl~~~~r~--- 236 (470)
T TIGR03459 164 AGTLAFKLLSLPGLAVMVWAVPKLATHLGGNPTV---ALWLGVLNPLVVIH-LIGGMHNEMLMVGLVSAGILLALKR--- 236 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH---HHHHHHcCchhhhh-hhcchhHHHHHHHHHHHHHHHHHhc---
Confidence 22223333333443 555666667777753 333 23334457776553 5577889999999999998877652
Q ss_pred ccHHHHHHHHHHHHHHHHhhhh
Q 005395 218 GSLAWALASAFGYFYMVSAWGG 239 (698)
Q Consensus 218 ~~~~~~~lagl~~~l~~~~w~g 239 (698)
+. +.+++..++.......
T Consensus 237 -~~---~~g~vli~~a~~VK~~ 254 (470)
T TIGR03459 237 -RP---VAGIALIAVAVALKAT 254 (470)
T ss_pred -cc---HHHHHHHHHHHHHhHH
Confidence 22 3345555555555444
No 42
>PF11345 DUF3147: Protein of unknown function (DUF3147); InterPro: IPR021493 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=38.67 E-value=2.7e+02 Score=25.12 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHhhh
Q 005395 150 FFASNTTVVAYFFGKEIWDS-GAGLVAAAFIAICPG 184 (698)
Q Consensus 150 i~~~l~vi~~yll~~~l~~~-~agl~Aall~ai~p~ 184 (698)
++|++.+...+.+++++..+ .+|++||+=......
T Consensus 6 ~~GG~av~~~~ii~~~~~~k~~GGifAA~PaV~las 41 (108)
T PF11345_consen 6 LLGGLAVVAAYIISRKLPPKSFGGIFAAFPAVFLAS 41 (108)
T ss_pred eeccHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHH
Confidence 47889999999999999877 699998875444444
No 43
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=33.47 E-value=7.8e+02 Score=28.18 Aligned_cols=72 Identities=22% Similarity=0.365 Sum_probs=39.9
Q ss_pred chhHHHHHHHHHHHhhhhhhhccCCCCch-----hHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhHH
Q 005395 168 DSGAGLVAAAFIAICPGYISRSVAGSYDN-----EGVAIFALLLTFYLFVKAVNTGSLAWALASAFGYFYMVSAWGGYVF 242 (698)
Q Consensus 168 ~~~agl~Aall~ai~p~~~~Rs~~G~~D~-----e~l~lf~~~l~~~~~~~a~~~~~~~~~~lagl~~~l~~~~w~g~~~ 242 (698)
+++...++++++...|+.+. +|| .++.+-+.++++++.. +++. +++++.+.+.+-.-.-+.+
T Consensus 131 ~~~~~~~~~~~~l~~PgLil------IDH~HFQYN~~~lGl~l~si~~~~----~~~~---l~~a~~F~~~Ln~Kqm~LY 197 (469)
T PF03155_consen 131 SSKQRFIALLLILLNPGLIL------IDHGHFQYNGFLLGLLLLSIAALI----RGRY---LLGAILFSLLLNFKQMFLY 197 (469)
T ss_pred chhHHHHHHHHHHHCchHHh------hhhhhhhHHHHHHHHHHHHHHHHH----hccH---HHHHHHHHHHHHHHHHHHH
Confidence 45667788888889999888 888 3444444444444333 3332 4455555554444444444
Q ss_pred HHHHHHHHHH
Q 005395 243 IINLIPLYVL 252 (698)
Q Consensus 243 ~~~~i~l~~~ 252 (698)
..-.+.+|.+
T Consensus 198 ~Ap~~f~yLL 207 (469)
T PF03155_consen 198 YAPAFFVYLL 207 (469)
T ss_pred HHHHHHHHHH
Confidence 4434444443
No 44
>COG5617 Predicted integral membrane protein [Function unknown]
Probab=29.65 E-value=1.1e+03 Score=28.70 Aligned_cols=28 Identities=36% Similarity=0.607 Sum_probs=18.0
Q ss_pred HHHHHHHH-HhcCCCCCe-------eEeec-cccchh
Q 005395 547 YREAYFWL-RQNTPPDAK-------VMSWW-DYGYQI 574 (698)
Q Consensus 547 w~eAl~WL-r~NTp~~s~-------VmSWW-DYGy~I 574 (698)
||.++.|. |.||.+.+. +++|= +.||-.
T Consensus 465 ~r~~liw~~~~n~~~~d~~aa~vrY~l~~~~~~~yi~ 501 (801)
T COG5617 465 IRKALIWVYRPNTKPTDKHAANVRYLLTPENIEGYIL 501 (801)
T ss_pred HHHHHHhhccCCccHHHHHHhhcceEEecCcccccee
Confidence 47888888 778776553 66665 444433
No 45
>PF02553 CbiN: Cobalt transport protein component CbiN; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane
Probab=26.55 E-value=1.6e+02 Score=24.79 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=18.4
Q ss_pred cccCCchhHHHHHHHHHHhcCccccccccCCCCCCCcc
Q 005395 72 MIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLG 109 (698)
Q Consensus 72 ~l~~~Dpyy~~r~~~~~~~~G~~~~~~~fD~~~~yP~G 109 (698)
...+-|.- ..+.+-+.+ ++|.+||+|. |-|.+
T Consensus 30 ~~GGaD~~----A~~~I~~~~-p~Y~PWf~pl-wePps 61 (74)
T PF02553_consen 30 EFGGADDQ----AEEMIEEID-PDYEPWFEPL-WEPPS 61 (74)
T ss_pred cccCccHH----HHHHHHHhC-CCCCcccccc-ccCCC
Confidence 34457762 333333333 3678999997 66654
No 46
>PF14256 YwiC: YwiC-like protein
Probab=25.41 E-value=5.5e+02 Score=23.82 Aligned_cols=47 Identities=13% Similarity=0.120 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhcchhhHHH
Q 005395 220 LAWALASAFGYFYMVSAWGG-YVFIINLIPLYVLVLLITGRYSMRLYV 266 (698)
Q Consensus 220 ~~~~~lagl~~~l~~~~w~g-~~~~~~~i~l~~~~~~~~~r~~~~~~~ 266 (698)
..|++++.++.......-+. ..+...++|++.+-.....|.++|...
T Consensus 63 ~~Yg~~a~~~~l~~l~~~p~ll~~~~~~~pl~~v~~~~~~~~~eRsLl 110 (129)
T PF14256_consen 63 LIYGAIALVFGLPALLYAPRLLWWALLFLPLFAVNLYFAKRKRERSLL 110 (129)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 35555554444333322222 222233444444322333444444333
No 47
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=21.43 E-value=9.7e+02 Score=25.26 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=14.0
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHH
Q 005395 219 SLAWALASAFGYFYMVSAWGGYVFII 244 (698)
Q Consensus 219 ~~~~~~lagl~~~l~~~~w~g~~~~~ 244 (698)
+++.+++.|-++++.... +...++.
T Consensus 35 Rll~~A~~Gal~~~~~~~-p~~~~~~ 59 (293)
T PF03419_consen 35 RLLLGAAIGALYSLLIFF-PPLSFLY 59 (293)
T ss_pred HHHHHHHHHHHHHHHHhh-cCHHHHH
Confidence 455566666666555544 6555443
Done!