Query 005395
Match_columns 698
No_of_seqs 232 out of 644
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 00:08:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 100.0 3.4E-63 1.1E-67 571.9 46.2 508 49-651 18-586 (724)
2 2lgz_A Dolichyl-diphosphooligo 100.0 1.2E-57 4.2E-62 455.8 0.0 180 510-689 14-195 (273)
3 3vgp_A Transmembrane oligosacc 100.0 5.8E-38 2E-42 296.9 4.7 132 541-689 2-144 (164)
4 2zai_A Oligosaccharyl transfer 99.9 2.9E-28 9.9E-33 262.5 5.2 113 528-649 2-116 (497)
5 3aag_A General glycosylation p 99.9 2.3E-27 7.9E-32 247.1 0.5 117 540-657 8-139 (291)
6 3aag_A General glycosylation p 27.3 33 0.0011 35.1 3.0 38 605-650 113-162 (291)
7 1emz_A Envelope glycoprotein E 9.5 2.2E+02 0.0077 18.0 2.5 18 222-239 4-21 (26)
8 1p58_D Envelope protein M; fla 5.0 4E+02 0.014 21.3 2.6 38 146-185 37-74 (75)
9 2d11_E Na(+)/H(+) exchange reg 4.6 1.5E+02 0.0053 19.0 -0.2 15 16-30 12-28 (28)
10 2d10_E Ezrin-radixin-moesin bi 4.5 1.6E+02 0.0053 19.0 -0.2 15 16-30 12-28 (28)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=100.00 E-value=3.4e-63 Score=571.85 Aligned_cols=508 Identities=16% Similarity=0.202 Sum_probs=350.5
Q ss_pred HHHHHHHHHHHHHHHhhh-c--cc-------cccccCCchhHHHHHHHHHHhcCccccccccCCCCCCCcccccCccccc
Q 005395 49 SILGLVYILAFITRLFSV-L--RY-------ESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYP 118 (698)
Q Consensus 49 ~~l~~i~~~a~~iRl~~~-~--~~-------~~~l~~~Dpyy~~r~~~~~~~~G~~~~~~~fD~~~~yP~G~~v~~~~~P 118 (698)
+.+++++++++++|+.+. . ++ +..+.++|||||+|.+|.+++|+..+ +.+| |+| |
T Consensus 18 l~~~~~~~~sl~~R~~~~~w~~~~~~f~~~~~~~~~~~D~yy~~r~ar~~l~~~~~p--~~~~-----p~g--------~ 82 (724)
T 3rce_A 18 ILILIAFAFSVLCRLYWVAWASEFYEFFFNDQLMITTNDGYAFAEGARDMIAGFHQP--NDLS-----YFG--------S 82 (724)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHSSCGGGEETTEECCSCHHHHHHHHHHHHHHHSCCCT--TSCC-----CTT--------C
T ss_pred HHHHHHHHHHHHHHHhhHHhhccCcceEECCEEeeccCCHHHHHHHHHHHHhcCCCC--CCCC-----CCc--------c
Confidence 445677888999999863 1 11 35678999999999999999886532 2233 555 4
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhccCCCCchhH
Q 005395 119 GLMVTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSYDNEG 198 (698)
Q Consensus 119 ~l~~~~a~i~~~l~~~g~~~~~~~v~~~~p~i~~~l~vi~~yll~~~l~~~~agl~Aall~ai~p~~~~Rs~~G~~D~e~ 198 (698)
.+..+.+.++++ +| .+++++|+++||++|+++++++|+++||++++++|++||+++|++|+|++||++|++|||+
T Consensus 83 ~~~~l~a~l~~i---~g--~sl~~v~~~lp~ifg~L~vi~~yll~~el~~~~aGl~AAll~ai~P~~i~RS~aG~~D~e~ 157 (724)
T 3rce_A 83 SLSTLTYWLYSI---LP--FSFESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANSYYNRTMSGYYDTDM 157 (724)
T ss_dssp HHHHHHHHHHHS---CS--SCHHHHHHHHHHHHGGGGHHHHHHHHHHTTCHHHHHHHHHHHTTSHHHHHTSSTTCCSGGG
T ss_pred hHHHHHHHHHHH---cC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 566777888876 34 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Q 005395 199 VAIFALLLTFYLFVKAVNTGSLAWALASAFGYFYMVSAW-GGYVFIINLIPLYVLVLLITGRYSMRLYVAYNCMYVLGML 277 (698)
Q Consensus 199 l~lf~~~l~~~~~~~a~~~~~~~~~~lagl~~~l~~~~w-~g~~~~~~~i~l~~~~~~~~~r~~~~~~~~~s~~~~v~t~ 277 (698)
++++++++++|++++++|+++..|++++|++++++.++| +||.++++++++|+++.++++|++.+.+..-.. ++
T Consensus 158 l~i~~~ll~~~~~i~alk~~~~~~~~lagl~~~ly~~~~~ggy~fi~~~i~l~~~~~ll~~r~~~~~~~~~~~--~~--- 232 (724)
T 3rce_A 158 LVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSSYSLNFAMIGLFGLYTLVFHRKEKIFYLAIAL--MI--- 232 (724)
T ss_dssp GTTHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HH---
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHcCcchHHHHHHHH--HH---
Confidence 999999999999999999999999999999997666555 779999999999998888899988765543211 11
Q ss_pred HHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchh
Q 005395 278 LAMQIRFVGFQHVQSGEHMAAMGVFFLMQVFYFLDWVKYMLSDTKLFQAFLRITVTSAIAVGALALGVGTASGYISPWTG 357 (698)
Q Consensus 278 l~~~~p~~g~~~~~s~~~~~~~~vf~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~~ 357 (698)
..++...+. +.+..++.++.+ +..++ +.+.+.. +.++ +.+++.+....|.++|+..
T Consensus 233 --~al~~~~~~----------~~~~~~~~lf~l--~~~~~----~~~~~~~-~~i~-----~~~~~~~~~~~gg~~~i~~ 288 (724)
T 3rce_A 233 --IALSMLAWQ----------YKLALIVLLFAI--FAFKE----EKINFYM-IWAL-----IFISISILHLSGGLDPVLY 288 (724)
T ss_dssp --HHHSCCCHH----------HHHHHHHHHHHH--HHHST----TCCCHHH-HHHH-----HHHHHHHHHHHCC------
T ss_pred --HHHhcchhH----------HHHHHHHHHHHH--Hhccc----chhhhHH-HHHH-----HHHHHHHHHHhccHHHHHH
Confidence 111111110 001111111112 21111 1111111 1111 1111111122333444433
Q ss_pred hhhhhcc-c-cc------ccccCcccccccccCCCChhHHHHHhHH--HHHHH-HHHHHHHhhcCCCchHHHHHHHHHHH
Q 005395 358 RFYSLLD-P-TY------AKDNIPIIASVSEHQPTAWSSFMFDFHI--LLFLF-PAGLYFCFKKLSDATIFIVMYGLTSM 426 (698)
Q Consensus 358 r~~~ll~-~-~~------~~~~~pi~~SVsE~qp~s~~~~~~~~~~--~~~l~-~~Gl~~~~~~~~~~~lfll~~~~~~~ 426 (698)
.....+. . .. .-.++++.+||+|.|++++.++....++ .++++ .+|+.++.+|.+ ..+++++|.++++
T Consensus 289 ~~~~y~~~~~~~~~~~~~~~~~pnV~~tI~El~~~~~~~~~~~~~g~~~~f~lgl~G~~ll~~r~~-~~ll~Lp~~~lG~ 367 (724)
T 3rce_A 289 QLKFYVFKASDVQNLKDAAFMYFNVNETIMEVNTIDPEVFMQRISSSVLVFILSFIGFILLCKDHK-SMLLALPMLALGF 367 (724)
T ss_dssp ------------------CCCCCCTTTTBGGGCCCCHHHHHHHHHSSHHHHHHHHHHHHHHHTTTS-SGGGGHHHHHHHH
T ss_pred HHHhheeccccccccccccCcCCcHHHHHHHhcCCCHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3222111 1 10 1147779999999999999999877544 44443 467665544433 5678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCCCCCCccccCCCcccchhhHHHHHHHH
Q 005395 427 YFAGVMVRLILVATPAVCLISAIAVSATIKNLTSLLRTKSKTAVAGSSKGTGGSKASSKASFDQSQPFQKNGAIALLLGA 506 (698)
Q Consensus 427 ~~s~~~~Rf~~~lap~~ailagi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l 506 (698)
++....+||.+|++|++|++.|++++++.+.+.+ . .+|.. .+..++.+++++
T Consensus 368 la~~~G~RF~~~~~P~lalg~G~~i~~~~~~~~~-~-----------------~~~~~----------~~~~~~~~~~l~ 419 (724)
T 3rce_A 368 MALRAGLRFTIYAVPVMALGFGYFLYAFFNFLEK-K-----------------QIKLS----------LRNKNILLILIA 419 (724)
T ss_dssp HHHHHCGGGGGGGHHHHHHHHHHHHHHHHHHHHH-S-----------------SCCCC----------HHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-h-----------------hhhhh----------hhHHHHHHHHHH
Confidence 9999999999999999999999999998886511 0 11110 001122222222
Q ss_pred HHHHHhhhhccccccccccCCCceeeeeccCCCCcccchhHHHHHHHHHhcCCCCCeeEeeccccchhhhhcCceeeecC
Q 005395 507 FYLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQITAMGNRTVIVDN 586 (698)
Q Consensus 507 ~~ll~~~~~~~~~~~~~~ys~Psi~~~~~~~~g~~~i~~dw~eAl~WLr~NTp~~s~VmSWWDYGy~I~~~a~R~tvaDg 586 (698)
++++.+...|. ..|+ ..|.++|||.||+.|||+|||+|++|+|||||||+|+++|||+|++||
T Consensus 420 ~~~~~p~~~~~-----~~~~------------~~p~~~~~~~~al~~lk~~t~~~~~v~sWWDyGy~i~~~a~r~t~~DG 482 (724)
T 3rce_A 420 FFSISPALMHI-----YYYK------------SSTVFTSYEASILNDLKNKAQREDYVVAWWDYGYPIRYYSDVKTLIDG 482 (724)
T ss_dssp HHHHHHHHHHH-----HHCC------------CCCSSCHHHHHHHHHHHTTSCTTCEEECCHHHHHHHHHHHCCEESCCS
T ss_pred HHHHHHHHHHh-----hhcC------------CCCeecHHHHHHHHHHHhcCCCCCEEEEEcccchHHHHHhCCcEeeeC
Confidence 22222222222 1221 145689999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhHHHHhhcCCHHHHHHHHHhc-----------------------CC-------------cEEE-EEeC-C-c
Q 005395 587 NTWNNTHIATVGRAMSSYEDEAYEIMRSL-----------------------DV-------------DYVL-VVFG-G-V 627 (698)
Q Consensus 587 nt~n~~~i~~vg~~las~e~~A~~il~~l-----------------------~v-------------~YVl-v~~g-~-~ 627 (698)
++||+++++.+|+++++||++|++|+|.. |. +|.+ .... . .
T Consensus 483 g~~~~~~~y~v~~al~s~~~~a~~i~rl~v~yt~~~~~~~~~~~~~~m~k~yg~~~~~~~l~~l~~~~~~l~p~k~r~iY 562 (724)
T 3rce_A 483 GKHLGKDNFFSSFVLSKEQIPAANMARLSVEYTEKSFKENYPDVLKAMVKDYNQTSAKDFLESLNDKNFKFDTNKTRDVY 562 (724)
T ss_dssp SSCCHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHTTTCSSSHHHHTTSCSSSCCCCSCCCSCEE
T ss_pred CcCCCccceeeehhcCCCHHHHHHHHHHHHHHhcccccccchHHHHHHHHhcCCCcHHHHHHHhhccCcccCCCCCCCEE
Confidence 99999999999999999999999998710 11 1111 0000 0 0
Q ss_pred ccCCcchhhhHHHHHHhcCCCCCC
Q 005395 628 TGYSSDDINKFLWMVRIGGGVFPV 651 (698)
Q Consensus 628 ~~~~~ddi~Kf~wm~ria~~~~~~ 651 (698)
.-.+.|+++|++|+.+.|+||+.+
T Consensus 563 ~~l~~~Ml~~~~wi~~Fg~wDf~t 586 (724)
T 3rce_A 563 IYMPYRMLRIMPVVAQFANTNPDN 586 (724)
T ss_dssp EEEEGGGGTTHHHHHHHHHBCTTT
T ss_pred EEECHHHHhHHHHHHHhcccccCC
Confidence 011468899999999999999874
No 2
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3; catalytic domain, oligosaccharyl transferase; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-57 Score=455.79 Aligned_cols=180 Identities=56% Similarity=1.050 Sum_probs=174.1
Q ss_pred HHhhhhccccccccccCCCceeeeeccCCCCcccchhHHHHHHHHHhcCCCCCeeEeeccccchhhhhcCceeeecCCCC
Q 005395 510 LSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQITAMGNRTVIVDNNTW 589 (698)
Q Consensus 510 l~~~~~~~~~~~~~~ys~Psi~~~~~~~~g~~~i~~dw~eAl~WLr~NTp~~s~VmSWWDYGy~I~~~a~R~tvaDgnt~ 589 (698)
++.++.||+|+++++||+|+|++.+++++|.+.++|||+|||+|||+|||+|++|||||||||||+++|||+|++|||||
T Consensus 14 ~~~~~~h~~w~~s~ays~Psiv~~~~~~~G~~~i~dDw~eAL~WLr~NTp~da~VmSWWDYGY~It~~A~R~tlaDG~t~ 93 (273)
T 2lgz_A 14 LVPRGSHSTWVTRTAYSSPSVVLPSQTPDGKLALIDDFREAYYWLRMNSDEDSKVAAWWDYGYQIGGMADRTTLVDNNTW 93 (273)
Confidence 34677999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHhhcCCHHHHHHHHHhcCCcEEEEEeCCcccCCcchhhhHHHHHHhcCCCCC-CCCCCCCcc-ccccccCC
Q 005395 590 NNTHIATVGRAMSSYEDEAYEIMRSLDVDYVLVVFGGVTGYSSDDINKFLWMVRIGGGVFP-VIKEPDYLV-NGDYRVDK 667 (698)
Q Consensus 590 n~~~i~~vg~~las~e~~A~~il~~l~v~YVlv~~g~~~~~~~ddi~Kf~wm~ria~~~~~-~i~~~~y~~-~~~~~~~~ 667 (698)
|++|++.+|++|++||++|++|+|++++|||+|++||+++|++||++||+||+|||++++| +|+|+||++ +|+|++|.
T Consensus 94 n~t~i~~vg~aftSsE~~A~~Ilr~L~vdYVlv~~gg~~gys~dDi~Kf~wM~rIa~~~~~~~I~e~dy~~~~g~~~v~~ 173 (273)
T 2lgz_A 94 NNTHIAIVGKANASPEEKSYEILKEHDVDYVLVIFGGLIGFGGDDINKFLWNIRISEGIWPEEIKERDFYTAEGEYRVDA 173 (273)
Confidence 9999999999999999999999999999999999999999999999999999999999999 799999998 88999999
Q ss_pred CCChhhHHHHhhhhhccccccc
Q 005395 668 GAAPKMLNCLMYKLSYYRFGEL 689 (698)
Q Consensus 668 ~~s~~~~~sllykl~y~~~~~~ 689 (698)
+++|+|.||||||||||||+++
T Consensus 174 ~~s~~m~~SlmYKLsy~~f~~~ 195 (273)
T 2lgz_A 174 RASETMRNSLLYKMSYKDFPQL 195 (273)
Confidence 9999999999999999999976
No 3
>3vgp_A Transmembrane oligosaccharyl transferase, putativ; glycosyltransferase, cell membrane; 1.75A {Archaeoglobus fulgidus}
Probab=100.00 E-value=5.8e-38 Score=296.93 Aligned_cols=132 Identities=24% Similarity=0.372 Sum_probs=116.0
Q ss_pred cccchhHHHHHHHHHhcCCCCC----------eeEeeccccchhhhhcCceeeecCCCCCchhhhHHHHh-hcCCHHHHH
Q 005395 541 RVIFDDYREAYFWLRQNTPPDA----------KVMSWWDYGYQITAMGNRTVIVDNNTWNNTHIATVGRA-MSSYEDEAY 609 (698)
Q Consensus 541 ~~i~~dw~eAl~WLr~NTp~~s----------~VmSWWDYGy~I~~~a~R~tvaDgnt~n~~~i~~vg~~-las~e~~A~ 609 (698)
|.+++||+|||+|||+|||+|+ +|||||||||||+++|||++++||+ ..++..+|++ +++||++|+
T Consensus 2 P~i~~dw~eal~Wl~~nTp~~~~~~~~~~p~y~V~sWWDYG~~i~~~a~R~~~ad~~---q~gi~~~A~ffla~~E~~A~ 78 (164)
T 3vgp_A 2 PDLTEDWKEALEWMRTSLEEQNYLNPYEKPEYSVMSWWDYGNWILYVSKKAVVANNF---QAGAVDAAKFFTAKSEDEAI 78 (164)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCC-CTTSSCSCSEECCCCHHHHTTTCSTTCSSCSSH---HHHHHHHHHHHTCSSHHHHH
T ss_pred CcccHHHHHHHHHHHhcCCCccccccccCCCCEEEeeccCchhheeeeCCeEEecCC---ccccHHHHHHHhcCCHHHHH
Confidence 5689999999999999999999 9999999999999999999999987 3456666665 567999999
Q ss_pred HHHHhcCCcEEEEEeCCcccCCcchhhhHHHHHHhcCCCCCCCCCCCCccccccccCCCCChhhHHHHhhhhhccccccc
Q 005395 610 EIMRSLDVDYVLVVFGGVTGYSSDDINKFLWMVRIGGGVFPVIKEPDYLVNGDYRVDKGAAPKMLNCLMYKLSYYRFGEL 689 (698)
Q Consensus 610 ~il~~l~v~YVlv~~g~~~~~~~ddi~Kf~wm~ria~~~~~~i~~~~y~~~~~~~~~~~~s~~~~~sllykl~y~~~~~~ 689 (698)
+|+|+++||||+|+++|.++ +||++||+||+|||+.+.+ ||+.+ +++++|.|||+||||||+..++
T Consensus 79 ~il~~l~v~YV~v~~~~~~~--~~d~~Kf~~m~~~a~~~~~-----~y~~~-------~~~~~~~~sml~rL~~~dgs~l 144 (164)
T 3vgp_A 79 KIAKKRGVRYVVTADEITMK--DANNTKFPAIMRIAGYNVD-----LMTEG-------EILNFFNHTVLYRLHMENAENL 144 (164)
T ss_dssp HHHHHHTCCEEEECGGGTTS--CTTSCSHHHHHHHTTCCGG-----GSCHH-------HHHHHHHTSHHHHHHTTTTTTC
T ss_pred HHHHHcCCcEEEEEECcccc--cCcchhHHHHHHHHcCCch-----hccCC-------CcCHHHHHHHHHHHhccCCCCc
Confidence 99999999999999999877 7999999999999987643 56521 2488999999999999999864
No 4
>2zai_A Oligosaccharyl transferase STT3 subunit related P; multi-domain proteins (alpha and beta); 2.70A {Pyrococcus furiosus} PDB: 2zag_A
Probab=99.94 E-value=2.9e-28 Score=262.51 Aligned_cols=113 Identities=26% Similarity=0.481 Sum_probs=83.1
Q ss_pred CceeeeeccCCCCcccchhHHHHHHHHHhcCCCCCeeEeeccccchh--hhhcCceeeecCCCCCchhhhHHHHhhcCCH
Q 005395 528 PSIVLAARGAHGNRVIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQI--TAMGNRTVIVDNNTWNNTHIATVGRAMSSYE 605 (698)
Q Consensus 528 Psi~~~~~~~~g~~~i~~dw~eAl~WLr~NTp~~s~VmSWWDYGy~I--~~~a~R~tvaDgnt~n~~~i~~vg~~las~e 605 (698)
|+++...+..++.|.+++||+|||+|||+|||+|++||||||||||| +++|||+|++||++||+. ...+|++|++||
T Consensus 2 ~~~~~~~~~~~~~pvi~ddw~eAL~WLr~NTPeda~VmSWWDYGY~I~~t~~A~R~tlaDG~t~n~~-~~~vAk~LtSnE 80 (497)
T 2zai_A 2 PLLAQSAKSMRTTEIETSGWEDALKWLRENTPEYSTATSWWDYGYWIESSLLGQRRASADGGHARDR-DHILALFLARDG 80 (497)
T ss_dssp ---------------CCSSHHHHHHHHHHHSCTTCCEEEGGGHHHHHHTTTTC---------CCSHH-HHHHHHHHHCCS
T ss_pred chHhhhhhhhcCCCCCCHHHHHHHHHHHhcCCCCCEEEEeecCccceeeEeecCceEEEcCCcCCCC-cchhheeccCCH
Confidence 34444444445677899999999999999999999999999999999 999999999999999843 357899999999
Q ss_pred HHHHHHHHhcCCcEEEEEeCCcccCCcchhhhHHHHHHhcCCCC
Q 005395 606 DEAYEIMRSLDVDYVLVVFGGVTGYSSDDINKFLWMVRIGGGVF 649 (698)
Q Consensus 606 ~~A~~il~~l~v~YVlv~~g~~~~~~~ddi~Kf~wm~ria~~~~ 649 (698)
++|+++++++++|||+++ .||++||+||.|||++++
T Consensus 81 ~~A~~iL~~L~vdYViV~--------~dDi~KF~~i~~igg~~~ 116 (497)
T 2zai_A 81 NISEVDFESWELNYFLVY--------LNDWAKFNAISYLGGAIT 116 (497)
T ss_dssp GGGCCCGGGGTCCEEEEE--------GGGGGGHHHHHHHTTSSC
T ss_pred hHHHHHHHHhCCcEEEEE--------hhHhHHHHHHHHhhcccc
Confidence 999999999999999996 689999999999998873
No 5
>3aag_A General glycosylation pathway protein; multidomain, transferase; HET: MLY; 2.80A {Campylobacter jejuni}
Probab=99.93 E-value=2.3e-27 Score=247.09 Aligned_cols=117 Identities=21% Similarity=0.268 Sum_probs=95.3
Q ss_pred CcccchhHHHHHHHHHhcCCCCCeeEeeccccchhhhhcCceeeecCCCCCchhhhHHHHhhcCCHHHHHHHHHhcCCcE
Q 005395 540 NRVIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQITAMGNRTVIVDNNTWNNTHIATVGRAMSSYEDEAYEIMRSLDVDY 619 (698)
Q Consensus 540 ~~~i~~dw~eAl~WLr~NTp~~s~VmSWWDYGy~I~~~a~R~tvaDgnt~n~~~i~~vg~~las~e~~A~~il~~l~v~Y 619 (698)
.|.+++||.|||.|||+|||+|++|+|||||||||+++|+|+|++||++||++|++.+|++|++||++|++|+| +.++|
T Consensus 8 ~p~~~~~~~~al~~l~~~t~~~~~v~sWWDyGy~i~~~a~r~t~~Dg~~~~~~~~~~v~~~~~s~e~~a~~i~r-l~~~y 86 (291)
T 3aag_A 8 PTVFSQNEASLLNQLXNIANREDYVVTWWDYGYPVRYYSDVXTLVDGGXHLGXDNFFPSFALSXDEQAAANMAR-LSVEY 86 (291)
T ss_dssp ------CHHHHHHHHHHHSCTTCEEECCGGGHHHHHHHHCCEESCBTTBCCHHHHHHHHHHHHSCHHHHHHHHH-HHHHH
T ss_pred CCccCHHHHHHHHHHHhcCCCCCEEEEEecCCceeeeecceeEEecCCccCCceeEEeeecccCCHHHHHHHHH-hhhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999 77888
Q ss_pred EEEEe---------C-----CcccCCcchhhhHHHHHHhcCCCC-CCCCCCCC
Q 005395 620 VLVVF---------G-----GVTGYSSDDINKFLWMVRIGGGVF-PVIKEPDY 657 (698)
Q Consensus 620 Vlv~~---------g-----~~~~~~~ddi~Kf~wm~ria~~~~-~~i~~~~y 657 (698)
+.+.| + ++.+|+++|++||.||+|+++... |+-..++|
T Consensus 87 ~~~~f~~~~~~~~~~~~l~~~~~~y~~~~~n~fL~~l~~~~~~~~p~~~~~~Y 139 (291)
T 3aag_A 87 TEXSFYAPQNDILXSDILQAMMXDYNQSNVDLFLASLSXPDFXIDTPXTRDIY 139 (291)
T ss_dssp HHHTTC----CTTSSCHHHHHHHTTTCCCHHHHHHHTTSSCCCCCSCCCSCEE
T ss_pred cchhccccccccchhhhhhhhhhccCchhHHHHHHhhcccccccCCCCCCCEE
Confidence 87643 2 244677778888888877776665 53333445
No 6
>3aag_A General glycosylation pathway protein; multidomain, transferase; HET: MLY; 2.80A {Campylobacter jejuni}
Probab=27.27 E-value=33 Score=35.12 Aligned_cols=38 Identities=8% Similarity=-0.060 Sum_probs=28.5
Q ss_pred HHHHHHHHHh-------c-----CCcEEEEEeCCcccCCcchhhhHHHHHHhcCCCCC
Q 005395 605 EDEAYEIMRS-------L-----DVDYVLVVFGGVTGYSSDDINKFLWMVRIGGGVFP 650 (698)
Q Consensus 605 e~~A~~il~~-------l-----~v~YVlv~~g~~~~~~~ddi~Kf~wm~ria~~~~~ 650 (698)
.+++.++++. | +.+|+++. .+++.|++|+.+.|+|++.
T Consensus 113 ~~~~n~fL~~l~~~~~~~~p~~~~~~Y~ils--------~~Mi~i~~~i~~Fg~wdf~ 162 (291)
T 3aag_A 113 QSNVDLFLASLSXPDFXIDTPXTRDIYLYMP--------ARMSLIFSTVASFSFINLD 162 (291)
T ss_dssp CCCHHHHHHHTTSSCCCCCSCCCSCEEEEEE--------GGGGGTHHHHHHTTSCCC-
T ss_pred chhHHHHHHhhcccccccCCCCCCCEEEEEc--------HHHHhHHHHHHHhcccccC
Confidence 4466666763 3 45688883 6799999999999999976
No 7
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=9.54 E-value=2.2e+02 Score=18.03 Aligned_cols=18 Identities=33% Similarity=0.975 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 005395 222 WALASAFGYFYMVSAWGG 239 (698)
Q Consensus 222 ~~~lagl~~~l~~~~w~g 239 (698)
|++++|++++.|.-.|.-
T Consensus 4 wGvl~glayfsm~gnWaK 21 (26)
T 1emz_A 4 WGVLAGIAYFSMVGNWAK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred chhhHHHHHHHHhhHHhh
Confidence 688899999888877754
No 8
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=5.05 E-value=4e+02 Score=21.27 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=20.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhh
Q 005395 146 LTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGY 185 (698)
Q Consensus 146 ~~p~i~~~l~vi~~yll~~~l~~~~agl~Aall~ai~p~~ 185 (698)
+=-|.++.+.+++.+.++.... .-.++..+++.+.|+|
T Consensus 37 lrNp~~al~a~~~~w~lG~~~~--Qrvi~~il~llvaPaY 74 (75)
T 1p58_D 37 LRHPGFTIMAAILAYTIGTTHF--QRVLIFILLTAIAPSM 74 (75)
T ss_pred HHChHHHHHHHHHHHHHcCChH--HHHHHHHHHHHhcccc
Confidence 3456666666666666663322 2344555556666765
No 9
>2d11_E Na(+)/H(+) exchange regulatory cofactor NHE-RF2; protein-peptide complex, cell adhesion; 2.81A {Mus musculus}
Probab=4.56 E-value=1.5e+02 Score=18.97 Aligned_cols=15 Identities=47% Similarity=0.915 Sum_probs=10.7
Q ss_pred cccccccc--ccccccc
Q 005395 16 AAPAMNLE--SDLFSNF 30 (698)
Q Consensus 16 ~~~~~~~~--~~~~~~~ 30 (698)
-||.|... ..+||||
T Consensus 12 rap~MDw~kk~eifsn~ 28 (28)
T 2d11_E 12 RAPQMDWNRKREIFSNF 28 (28)
T ss_pred cCCcccHHHHHHHHhcC
Confidence 47888753 5688886
No 10
>2d10_E Ezrin-radixin-moesin binding phosphoprotein 50; protein-peptide complex, cell adhesion; 2.50A {Mus musculus}
Probab=4.53 E-value=1.6e+02 Score=18.96 Aligned_cols=15 Identities=47% Similarity=0.840 Sum_probs=10.7
Q ss_pred cccccccc--ccccccc
Q 005395 16 AAPAMNLE--SDLFSNF 30 (698)
Q Consensus 16 ~~~~~~~~--~~~~~~~ 30 (698)
-||.|... ..+||||
T Consensus 12 rap~MDw~kk~eifsn~ 28 (28)
T 2d10_E 12 RAPQMDWSKKNELFSNL 28 (28)
T ss_pred cCCcccHHHHHHHHhcC
Confidence 47888753 5688886
Done!