Query 005395
Match_columns 698
No_of_seqs 232 out of 644
Neff 7.3
Searched_HMMs 13730
Date Tue Mar 26 00:08:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005395.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005395hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54d_ f.23.1.1 (D:) Mitochon 7.6 1.4E+02 0.0098 25.0 3.4 30 542-571 107-138 (144)
2 d1t1va_ c.47.1.14 (A:) SH3BGRL 5.2 3E+02 0.022 20.3 4.2 37 604-647 20-56 (93)
3 d1r7ha_ c.47.1.1 (A:) Glutared 4.2 3.8E+02 0.028 18.4 3.9 18 606-623 15-32 (74)
4 d1xb2b1 a.5.2.2 (B:56-111) Elo 3.6 1.8E+02 0.013 20.2 1.2 14 544-557 30-43 (56)
5 d1hx0a1 b.71.1.1 (A:404-496) A 3.4 1.3E+02 0.0093 23.2 0.3 21 564-584 3-25 (93)
6 d1jaea1 b.71.1.1 (A:379-471) A 3.3 1.3E+02 0.0098 23.1 0.3 18 564-581 4-23 (93)
7 d2im8a1 a.24.26.1 (A:1-123) Hy 3.2 2.8E+02 0.02 22.3 2.3 19 543-561 50-69 (123)
8 d2crna1 a.5.2.1 (A:8-58) Suppr 3.1 2.6E+02 0.019 18.7 1.7 17 546-562 30-46 (51)
9 d1efub3 a.5.2.2 (B:1-54) Elong 3.0 2.2E+02 0.016 19.5 1.2 14 544-557 30-43 (54)
10 d1z3ea1 c.47.1.12 (A:1-114) Re 3.0 2.5E+02 0.018 21.7 1.8 17 544-560 10-26 (114)
No 1
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.60 E-value=1.4e+02 Score=25.02 Aligned_cols=30 Identities=13% Similarity=0.286 Sum_probs=22.1
Q ss_pred ccchhHHHH-HHHHHh-cCCCCCeeEeecccc
Q 005395 542 VIFDDYREA-YFWLRQ-NTPPDAKVMSWWDYG 571 (698)
Q Consensus 542 ~i~~dw~eA-l~WLr~-NTp~~s~VmSWWDYG 571 (698)
.++++|+|+ ++.|++ |.+|=..+-|=|||=
T Consensus 107 T~~~Ewqeaq~erm~~~~~nPitG~SSkwDYe 138 (144)
T d1v54d_ 107 TFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYD 138 (144)
T ss_dssp GGSHHHHHHHHHHHHHTTSSTTTTSGGGEETT
T ss_pred CCCHHHHHHHHHHHHHcCCCCCCCcccccccc
Confidence 478999765 455554 677777899999993
No 2
>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.24 E-value=3e+02 Score=20.26 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=26.9
Q ss_pred CHHHHHHHHHhcCCcEEEEEeCCcccCCcchhhhHHHHHHhcCC
Q 005395 604 YEDEAYEIMRSLDVDYVLVVFGGVTGYSSDDINKFLWMVRIGGG 647 (698)
Q Consensus 604 ~e~~A~~il~~l~v~YVlv~~g~~~~~~~ddi~Kf~wm~ria~~ 647 (698)
+-+++.++++.++++|..++-. +|-.-..++.+.+++
T Consensus 20 ~~~r~~~lL~~~~I~y~~iDi~-------~d~~~~~~~~~~~g~ 56 (93)
T d1t1va_ 20 QQSEVTRILDGKRIQYQLVDIS-------QDNALRDEMRTLAGN 56 (93)
T ss_dssp HHHHHHHHHHHTTCCCEEEETT-------SCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCceEEEEec-------CchhHHHHHHHhccC
Confidence 5778999999999999888522 244445566677664
No 3
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=4.23 E-value=3.8e+02 Score=18.37 Aligned_cols=18 Identities=11% Similarity=0.121 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCcEEEEE
Q 005395 606 DEAYEIMRSLDVDYVLVV 623 (698)
Q Consensus 606 ~~A~~il~~l~v~YVlv~ 623 (698)
++|.+++++++++|..+.
T Consensus 15 ~~ak~~L~~~~i~~~~~~ 32 (74)
T d1r7ha_ 15 TATKKALDRAGLAYNTVD 32 (74)
T ss_dssp HHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHcCCceEEEE
Confidence 578899999999998884
No 4
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=3.62 E-value=1.8e+02 Score=20.22 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=11.5
Q ss_pred chhHHHHHHHHHhc
Q 005395 544 FDDYREAYFWLRQN 557 (698)
Q Consensus 544 ~~dw~eAl~WLr~N 557 (698)
+.|..+|.+|||++
T Consensus 30 ~gD~ekA~e~Lrkk 43 (56)
T d1xb2b1 30 GGDLKQAESWLHKQ 43 (56)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 45788999999975
No 5
>d1hx0a1 b.71.1.1 (A:404-496) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=3.41 E-value=1.3e+02 Score=23.25 Aligned_cols=21 Identities=48% Similarity=1.014 Sum_probs=13.2
Q ss_pred eEeecccc-chhh-hhcCceeee
Q 005395 564 VMSWWDYG-YQIT-AMGNRTVIV 584 (698)
Q Consensus 564 VmSWWDYG-y~I~-~~a~R~tva 584 (698)
|--|||-| +||. .-++|.=+|
T Consensus 3 v~nWwdng~nqIAF~RG~kGFvA 25 (93)
T d1hx0a1 3 FANWWDNGSNQVAFGRGNRGFIV 25 (93)
T ss_dssp EEEEEECSSSEEEEEETTTEEEE
T ss_pred ccceEeCCCcEEEEecCCCcEEE
Confidence 56799999 4776 344454444
No 6
>d1jaea1 b.71.1.1 (A:379-471) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}
Probab=3.26 E-value=1.3e+02 Score=23.11 Aligned_cols=18 Identities=33% Similarity=0.798 Sum_probs=11.6
Q ss_pred eEeecccc-chhh-hhcCce
Q 005395 564 VMSWWDYG-YQIT-AMGNRT 581 (698)
Q Consensus 564 VmSWWDYG-y~I~-~~a~R~ 581 (698)
|--|||-| +||. .-++|.
T Consensus 4 v~nWwdng~nqIAF~RG~kG 23 (93)
T d1jaea1 4 VENWWSNDDNQIAFSRGSQG 23 (93)
T ss_dssp EEEEEECSSSEEEEEETTTE
T ss_pred ccccEECCCcEEEEecCCCc
Confidence 66799998 4666 334444
No 7
>d2im8a1 a.24.26.1 (A:1-123) Hypothetical protein YppE {Bacillus subtilis [TaxId: 1423]}
Probab=3.21 E-value=2.8e+02 Score=22.29 Aligned_cols=19 Identities=11% Similarity=0.155 Sum_probs=15.5
Q ss_pred cchhHH-HHHHHHHhcCCCC
Q 005395 543 IFDDYR-EAYFWLRQNTPPD 561 (698)
Q Consensus 543 i~~dw~-eAl~WLr~NTp~~ 561 (698)
..+.|. .|+.|++.+.|+.
T Consensus 50 ~~~~w~~~a~~wi~~~rPky 69 (123)
T d2im8a1 50 LAARWAEGALELIKVRRPKY 69 (123)
T ss_dssp HHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHHhhCccc
Confidence 357895 8999999999974
No 8
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.08 E-value=2.6e+02 Score=18.70 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCCCCC
Q 005395 546 DYREAYFWLRQNTPPDA 562 (698)
Q Consensus 546 dw~eAl~WLr~NTp~~s 562 (698)
+-.+|++||-+|..+++
T Consensus 30 ~ve~A~~Wl~~h~~d~d 46 (51)
T d2crna1 30 TAEEALAWLHDHCNDPS 46 (51)
T ss_dssp CHHHHHHHHHHHSSSTT
T ss_pred CHHHHHHHHHHcCCCcC
Confidence 56889999998876543
No 9
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.01 E-value=2.2e+02 Score=19.51 Aligned_cols=14 Identities=21% Similarity=0.067 Sum_probs=11.4
Q ss_pred chhHHHHHHHHHhc
Q 005395 544 FDDYREAYFWLRQN 557 (698)
Q Consensus 544 ~~dw~eAl~WLr~N 557 (698)
+.|..+|.+|||+.
T Consensus 30 ~gD~ekA~e~Lr~k 43 (54)
T d1efub3 30 NGDIELAIENMRKS 43 (54)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 45789999999874
No 10
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=2.98 E-value=2.5e+02 Score=21.72 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=13.4
Q ss_pred chhHHHHHHHHHhcCCC
Q 005395 544 FDDYREAYFWLRQNTPP 560 (698)
Q Consensus 544 ~~dw~eAl~WLr~NTp~ 560 (698)
-+.+++|+.||++|--+
T Consensus 10 C~~~rka~~~L~~~~i~ 26 (114)
T d1z3ea1 10 CTSCRKARAWLEEHEIP 26 (114)
T ss_dssp CHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHCCCC
Confidence 35789999999887443
Done!