BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005396
(698 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4
(Gcp4)
Length = 677
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 115/521 (22%), Positives = 207/521 (39%), Gaps = 68/521 (13%)
Query: 133 NGLVNHAFAASLRALLLDYEAMVAQLEHQFRLG--RLSIQGLWFYCQPMLGSMQAVSAVI 190
+G+ AF L ++L Y + LE +F LG LSI + ++ +V V+
Sbjct: 82 HGIYLRAFCTGLDSVLQPYRQALLDLEQEF-LGDPHLSISHVNYFLDQFQLLFPSVMVVV 140
Query: 191 HKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 250
+ + G +L + + G VRS LEK+ L W+ G++ D
Sbjct: 141 EQIKSQKIHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLD 198
Query: 251 PYGEFFIAEDKSL---------------LKDYDAKYWRQ------------------RYS 277
+ EFFI + S + K R+ ++S
Sbjct: 199 QHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFS 258
Query: 278 LK-DGIPSFL-ANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLL-----SFGSNHHYL 330
L+ + +PS++ +A KIL G+ + + + V + +L +F + H L
Sbjct: 259 LRVEILPSYIPVRVAEKILFVGESVQMFE----NQNVNLTRKGSILKNQEDTFAAELHRL 314
Query: 331 ------------ECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMD 378
+ V + L L+ E DL+G+L+ IK + LL +G+ F+D
Sbjct: 315 KQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFID 374
Query: 379 IAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVE 438
A+ L +T + + D L ++E + AT
Sbjct: 375 TAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKDAT--QAR 432
Query: 439 IKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQ 498
S ++ E P S G LSYKVQWPL I+ + L KY +VF+ L + V+ +
Sbjct: 433 EGPSRETSPREAPAS--GWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAE 490
Query: 499 LCGAWQVHQGARAFNASGTAISRSSLLCRSMLKF-INSLLHYLTFEVLEPNWHVMHNRLQ 557
L W + + ++ T + L R+ + F +++L +YL +VLE + + +++
Sbjct: 491 LQHCWALQMQRKHLKSNQTDAIKWRL--RNHMAFLVDNLQYYLQVDVLESQFSQLLHQIN 548
Query: 558 TAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLC 598
+ + + + HD FL L + + L + + + LC
Sbjct: 549 STRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLC 589
>pdb|4H6U|A Chain A, Tubulin Acetyltransferase Mutant
pdb|4H6U|B Chain B, Tubulin Acetyltransferase Mutant
Length = 200
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 317 NSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLL 367
S+L F H +E ++AY+ S + L+ +++RYDL + + +++
Sbjct: 134 GSELFDFMLKHKQVEPAQMAYDRPSPKFLSFLEKRYDLRNSVPQVNNFVVF 184
>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
Length = 207
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 18/105 (17%)
Query: 393 VEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPV 452
V + S +DI + + + H D R LK EI S+ L +P
Sbjct: 106 VSEFNSRVDIVIXNPPFGSQRKHAD------------RPFLLKAFEISDVVYSIHLAKPE 153
Query: 453 SITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVER 497
+E FS W V++ + TK ++ + FH K +ER
Sbjct: 154 VRRFIEKFS------WEHGFVVTHRLTTKIEIPLQFFFHRKKLER 192
>pdb|4HKF|A Chain A, Crystal Structure Of Danio Rerio Mec-17 Catalytic Domain
In Complex With Acetyl-Coa
Length = 191
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 318 SKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLL 367
S+L F H +E + AY+ S + L+ +++RYDL + + +++
Sbjct: 133 SELFDFXLKHKQVEPAQXAYDRPSPKFLSFLEKRYDLRNSVPQVNNFVVF 182
>pdb|4H6Z|A Chain A, Tubulin Acetyltransferase
pdb|4H6Z|B Chain B, Tubulin Acetyltransferase
Length = 190
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 318 SKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLL 367
S+L F H +E + AY+ S + L+ +++RYDL + + +++
Sbjct: 135 SELFDFXLKHKQVEPAQXAYDRPSPKFLSFLEKRYDLRNSVPQVNNFVVF 184
>pdb|3FY3|A Chain A, Crystal Structure Of Truncated Hemolysin A From P.
Mirabilis
Length = 236
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 301 NVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRS 360
N + E G T N+ LLS G N + LL+LI R D GK+ +
Sbjct: 132 NPLFENGQLKGYSTLNNTNLLSLGKNG-----------LNTTGLLDLIAPRIDSRGKITA 180
Query: 361 IKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQS 398
+ Q F HF ++ ++ + LD +QS
Sbjct: 181 AEISAFTGQNTFSQHFDILSSQKPVSALDSYFFGSMQS 218
>pdb|1MOJ|A Chain A, Crystal Structure Of An Archaeal Dps-Homologue From
Halobacterium Salinarum
pdb|1MOJ|B Chain B, Crystal Structure Of An Archaeal Dps-Homologue From
Halobacterium Salinarum
pdb|1MOJ|C Chain C, Crystal Structure Of An Archaeal Dps-Homologue From
Halobacterium Salinarum
pdb|1MOJ|D Chain D, Crystal Structure Of An Archaeal Dps-Homologue From
Halobacterium Salinarum
pdb|1TJO|A Chain A, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TJO|B Chain B, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TJO|C Chain C, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TJO|D Chain D, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TK6|A Chain A, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TK6|B Chain B, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TK6|C Chain C, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TK6|D Chain D, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TKO|A Chain A, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TKO|B Chain B, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TKO|C Chain C, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TKO|D Chain D, Iron-Oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.Salinarum Dpsa In Its Low And
High Iron States
pdb|1TKP|A Chain A, Iron-oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.salinarum Dpsa In Its Low And
High Iron States
pdb|1TKP|B Chain B, Iron-oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.salinarum Dpsa In Its Low And
High Iron States
pdb|1TKP|C Chain C, Iron-oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.salinarum Dpsa In Its Low And
High Iron States
pdb|1TKP|D Chain D, Iron-oxo Clusters Biomineralizing On Protein Surfaces.
Structural Analysis Of H.salinarum Dpsa In Its Low And
High Iron States
Length = 182
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 84 GNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVES---RSQFKNGLVNHAF 140
G + S T Q +AS+D+ +++ L + G +E+ ++ L +HA
Sbjct: 89 GGVPHASPETLQAEASVDVEDEDVYDIRTSLANDMAIYGDIIEATREHTELAENLGDHAT 148
Query: 141 AASLRALLLDYEAMVAQLEHQFRLGRLSIQG 171
A LR L++ E +EH L QG
Sbjct: 149 AHMLREGLIELEDDAHHIEHYLEDDTLVTQG 179
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 10/118 (8%)
Query: 561 SIDEVIQHHDF--FLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLIS---SSIDL 615
++ E I HD + + E L L L KVER+K ++Y+ AT ++I+ +S +L
Sbjct: 248 AVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVATYYVIAPAEASSNL 307
Query: 616 PKLEEPSDGFSGSEKFKR---LKLRSLSQVQKV--MIRDATVTESILKFEREFNNELQ 668
+ + G EK R +K R++ ++V I T T S +E FN ++
Sbjct: 308 ARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMK 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,874,842
Number of Sequences: 62578
Number of extensions: 729963
Number of successful extensions: 1920
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1908
Number of HSP's gapped (non-prelim): 17
length of query: 698
length of database: 14,973,337
effective HSP length: 106
effective length of query: 592
effective length of database: 8,340,069
effective search space: 4937320848
effective search space used: 4937320848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)