Query 005396
Match_columns 698
No_of_seqs 307 out of 867
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 22:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2001 Gamma-tubulin complex, 100.0 6E-112 1E-116 895.5 61.9 659 3-677 34-716 (734)
2 KOG2065 Gamma-tubulin ring com 100.0 4.9E-74 1.1E-78 580.8 44.9 585 57-698 1-665 (679)
3 PF04130 Spc97_Spc98: Spc97 / 100.0 3.2E-68 6.9E-73 607.0 46.6 505 60-581 1-542 (542)
4 KOG2000 Gamma-tubulin complex, 100.0 1.8E-53 3.9E-58 477.6 38.2 519 51-608 201-762 (879)
5 KOG4344 Uncharacterized conser 100.0 1E-26 2.2E-31 244.0 36.9 609 51-694 289-1113(1121)
6 PF14609 GCP5-Mod21: gamma-Tub 38.2 4E+02 0.0086 29.6 11.5 63 51-127 179-245 (653)
7 KOG2000 Gamma-tubulin complex, 23.9 1.2E+02 0.0025 36.5 5.3 120 454-582 589-710 (879)
8 PF15027 DUF4525: Domain of un 23.7 3.8E+02 0.0083 23.9 7.0 67 94-162 30-102 (138)
9 PF08673 RsbU_N: Phosphoserine 21.0 2.9E+02 0.0063 22.4 5.5 43 556-601 31-73 (77)
10 COG5415 Predicted integral mem 20.8 5.5E+02 0.012 25.1 8.0 86 149-246 11-96 (251)
11 PF14966 DNA_repr_REX1B: DNA r 20.3 5.4E+02 0.012 21.9 9.3 72 106-177 3-80 (97)
No 1
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton]
Probab=100.00 E-value=6.5e-112 Score=895.50 Aligned_cols=659 Identities=42% Similarity=0.682 Sum_probs=563.6
Q ss_pred CCCCCCCCCcccCCCc-CC-ccccchhhh-----hh-hccc-cccCcccccCCCCCccchHHHHHHHHHHHhcCCCCCce
Q 005396 3 MSYPSTPRWNIERPFL-TG-RFHQETKAA-----SR-FADS-FSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYI 73 (698)
Q Consensus 3 ~~~p~~p~w~~~~~~~-~~-~~~~~~~~~-----~~-~~~~-~~~~~~~~~~~~~~~~~qE~~lv~dLL~~L~G~~g~~~ 73 (698)
++.|..|.|...||++ || .+++..... +. ...+ ..+.....+++.+|.+.||..+++||+++|.|++|+|+
T Consensus 34 i~~~~~s~~~~~rp~~~tG~~~~~s~~~~l~~~~s~r~~~~~~~~~~~~~~is~~~lp~QE~~li~dLl~af~Gv~~ryV 113 (734)
T KOG2001|consen 34 INPKEESELEEKRPALDTGSVQHQSLVSDLVNLLSKRILEGVGIDYFTDYEISDMPLPSQESKLIDDLLYAFVGVEGRYV 113 (734)
T ss_pred cCccccccccccCcCCCcCccchhhhhhccccchhhhhhhccccccccccCcccCCchhHHHHHHHHHHHHHcCCCccee
Confidence 5678889999999999 77 333333211 11 1112 23446677899999999999999999999999999999
Q ss_pred eeecccccCCCCCC---CCCccceEecCCCCHhHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Q 005396 74 SIKRRVNHVHGNDT---YDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLD 150 (698)
Q Consensus 74 ~~~~~~~~~~~~~~---~~~~~~f~i~~~~~~sl~~l~~~il~lg~~~~~l~~fv~~~~~~~~g~v~~Al~~~l~~~L~~ 150 (698)
+++. ..+... ......|.|.|+.+-++++++++++|+|.+|..+++||+.++.+.+|.|++|+|+|++++|.+
T Consensus 114 ~~Q~----~~~s~~~~~~~~~~~F~v~~~fd~~ir~la~eilpl~~yy~~v~~fie~~s~f~~G~vn~alaaAlr~ll~d 189 (734)
T KOG2001|consen 114 SPQY----MIISEAYEKWIDSIFFMVLPRFDLAIRELAEEILPLASYYLLVQDFIEETSFFEYGQVNHALAAALRELLYD 189 (734)
T ss_pred ecch----hhhhhhhhhhccCcceeeccchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHH
Confidence 9865 222111 012478999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHhhhhHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005396 151 YEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQC 230 (698)
Q Consensus 151 y~~~v~~lE~~~~~~~lsL~~L~~~~~~~~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~ 230 (698)
|+..|.++|++.+.+.+||++||++++|++..|+.++..++.+..+.++||.+|+.|++++..+.||+.++.++.+++++
T Consensus 190 yy~li~qlE~e~R~~~lslq~L~~y~qP~m~~m~~l~~~~~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~ 269 (734)
T KOG2001|consen 190 YYELISQLEQELRTNRLSLQDLWFYMQPMMRSMRRLAVAATTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRN 269 (734)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhceecCCCCcceEeeCCCc----ccccchhhhcccccc-ccCCChhhHHHHHHHHhhhhHHHHHHH
Q 005396 231 ASNAYLGILERWVYEGVIDDPYGEFFIAEDKSL----LKDYDAKYWRQRYSL-KDGIPSFLANIAGKILTTGKYLNVMRE 305 (698)
Q Consensus 231 ~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~----~~d~~~~~W~~~y~l-~~~vP~Fl~~~a~~Il~~GK~l~~Lr~ 305 (698)
+++||++|+++||+.|.++|||+||||.++... .+|+.++||++||+| ++.+|.|+.+.|+|||.||||+||+|+
T Consensus 270 as~~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~~~~k~~l~ed~~d~YW~~RY~ir~dqiP~fL~~~adkIL~tGKYLNVvRe 349 (734)
T KOG2001|consen 270 ASQPYCTMLEEWIYQGIINDPYQEFMIYDNLITKEDLPEDYTDKYWDQRYTIRKDQIPGFLLSEADKILRTGKYLNVVRE 349 (734)
T ss_pred hcchHHHHHHHHHhcccccCchHhHhhhhcchhhhcCchhhhHHHHHHhheechhhcchHHHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999999999999999988322 267899999999999 789999999999999999999999999
Q ss_pred hCCCCCCCCccccccc-cCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhHhHhccCcchHHHHHHHHHHHH
Q 005396 306 CGHSAQVPTSENSKLL-SFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREEL 384 (698)
Q Consensus 306 ~~~~~~~p~~e~~~~~-~f~~~~~~~~~I~~~~~~as~~Ll~ll~~~~~L~~~L~~l~~~fLL~~Gdf~~~f~~~~~~~L 384 (698)
||+.+++|.+.+.... ....+..+.+.|+++|.+|+..++++++++++|.+||+++|+||||.+|||+.+|+|.+.++|
T Consensus 350 C~~~v~~p~~~n~~~~~~~~~e~~~~e~I~~ay~~A~~~lL~ll~~e~dL~~hLrslK~YfLldQgdF~~~Fld~~~eEL 429 (734)
T KOG2001|consen 350 CGKIVTIPQSSNEINDPADLMESNHEEYIKKAYEFANEILLKLLFEEYDLVGHLRSLKHYFLLDQGDFFVTFLDKAEEEL 429 (734)
T ss_pred hCccCCCCcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 9999988766432111 122347899999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccHHHHHHHHHHHHH-hhhcccCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCC---CCCcceeeE
Q 005396 385 MKQLDEITVEKLQSLLDIALR-STAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQP---VSITGLETF 460 (698)
Q Consensus 385 ~~~~~~~~~~~L~~~l~~al~-~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~~~~~~~~---~~~~~~d~l 460 (698)
.|+.+.+++.+|+++|+.|+| .|.+..||++++++|++++++++.+++.+..++....+ ++...+| ..++|++++
T Consensus 430 ~K~v~~i~p~kLqsLL~laLr~~s~a~~Dp~k~~L~i~~~~~~L~~ql~~~l~ie~~e~~-ans~~dP~~~l~lsGlE~f 508 (734)
T KOG2001|consen 430 TKNVENISPEKLQSLLDLALREQSEAANDPMKEDLKICVDPTDLITQLSHILAIEPEEES-ANSQADPLEHLDLSGLEAF 508 (734)
T ss_pred hcchhhcCHHHHHHHHHHHHHhhhcccCCchhhheeeeecHhhHHHHHHHHHhcCccccc-cccccCcchhccccchhhh
Confidence 999999999999999999999 77888999999999999999999999887655532211 1222344 578999999
Q ss_pred EeeeecCCCcceeeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCch-hhHHhHHHHHHHHHHHHHHHHHH
Q 005396 461 SLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASG-TAISRSSLLCRSMLKFINSLLHY 539 (698)
Q Consensus 461 ~L~Y~v~wPL~lIit~~~l~~Y~~IFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~~-~~~~~~~~lr~~m~~Fv~~l~~Y 539 (698)
+|+|+||||||+||++++|.|||+|||++|.||||+++||.+|+.++..|..+..+ .+.++++.||++|++||++|.+|
T Consensus 509 af~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~~Y 588 (734)
T KOG2001|consen 509 AFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIEYY 588 (734)
T ss_pred eeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877666543 45678899999999999999999
Q ss_pred HHHHhccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 005396 540 LTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLP-DLLKKVERLKSLCLQYAAATQWLISSSIDLPKL 618 (698)
Q Consensus 540 ~~~~VIe~~w~~~~~~l~~a~~~d~l~~~H~~fL~~i~~~c~L~~~-~l~~~l~~il~~c~~F~~~~~~~~~~~~~~~~~ 618 (698)
++.+||||+|+.|+..+++++++|+|+..|+.|||.|++.|||+.+ .+++.+.++..+|+.||++++++++.. ....-
T Consensus 589 ~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld~CLk~ClL~~~~~llk~~~kL~~vCl~f~~~~q~~~~~~-~~~~~ 667 (734)
T KOG2001|consen 589 MTQEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLDTCLKRCLLTLSPLLLKSFSKLYKVCLMFCSFTQKLTQSD-PTDEE 667 (734)
T ss_pred HHHHhhcchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhhh
Confidence 9999999999999999999999999999999999999999999986 889999999999999999999987321 00100
Q ss_pred CCCCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 005396 619 EEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSS 677 (698)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~L~~~ 677 (698)
.....++-..+.+| ..+.+ --+.+.+.+.+++++|+++++.|+..|++.
T Consensus 668 ~~~~~~~~~d~~~k------~~~t~----li~~leei~~~~~~~f~~~l~~L~~rlsk~ 716 (734)
T KOG2001|consen 668 KNSVGHPQFDEGRK------EDDTL----LISKLEEIISNADKNFRDCLKNLLQRLSKF 716 (734)
T ss_pred hccccccchhhhhh------hhhHH----HHHHHHHHHHHhHHHHHHHHHHHHHHcccc
Confidence 01111000000111 11111 123345667889999999999999999954
No 2
>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton]
Probab=100.00 E-value=4.9e-74 Score=580.76 Aligned_cols=585 Identities=22% Similarity=0.349 Sum_probs=459.5
Q ss_pred HHHHHHHHhcCCCCCceeeecccccCCCCCCCCCccceEecCCCCHhHHHHHHHHHHHHhHHHHHHHHHh---hhc----
Q 005396 57 VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVE---SRS---- 129 (698)
Q Consensus 57 lv~dLL~~L~G~~g~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~sl~~l~~~il~lg~~~~~l~~fv~---~~~---- 129 (698)
|++|||.||.|++|..|.++.+.+.... +-.++.-++||+++++++++++|..|+.+.+|.+ +..
T Consensus 1 MiHeLLLAl~g~~g~~~~~~~R~~GLa~--------~~d~p~FihPsEr~i~~rliklg~~Y~e~~rFtswIrsvTsH~~ 72 (679)
T KOG2065|consen 1 MIHELLLALRGHNGEQLGIKARFNGLAE--------TTDIPQFIHPSEREIFMRLIKLGKVYQEVERFTSWIRSVTSHSS 72 (679)
T ss_pred CHHHHHHHHhCCChhheeehhhcccccc--------ccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 5899999999999999998874321111 1111223689999999999999999998888762 211
Q ss_pred -----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCcHHHHHHhhhhHHHHHHHHHHHHHHhccCC
Q 005396 130 -----------QFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANN 197 (698)
Q Consensus 130 -----------~~~~g~v~~Al~~~l~~~L~~y~~~v~~lE~~~~~-~~lsL~~L~~~~~~~~~~l~~L~~i~~~~~~~~ 197 (698)
...+|.|..|||.+|..+|++|+..|..+|+.+.. ...||..++..+......+..+..++.+|...+
T Consensus 73 ~r~~~~s~q~~~~lhg~Ylra~a~Gi~~~L~~Yr~ail~lEq~~Lg~~~~sls~V~~~L~~ff~Lfp~~~~vi~eI~~~~ 152 (679)
T KOG2065|consen 73 GRKSDTSGQLPDSLHGYYLRALAKGIEMALEEYRAAILRLEQYCLGNERNSLSYVYNALYAFFPLFPFMRNVITEIHVLN 152 (679)
T ss_pred cccccccccCCCccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 12478999999999999999999999999998765 578999988888777788888899999999889
Q ss_pred CcchhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhceecCCCCcceEeeCCCcc-------cccchh
Q 005396 198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLL-------KDYDAK 270 (698)
Q Consensus 198 ~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~~-------~d~~~~ 270 (698)
.+||+||+.||++ +||.|.+|..+..++..|..+++++|..||.+|.+.|+++||||+...... +...++
T Consensus 153 irGcqlL~~l~k~---HCg~p~ir~~l~~~l~~~h~vmy~qLaaWml~Gvl~D~H~EFFIK~q~~~~~d~ss~~ee~~e~ 229 (679)
T KOG2065|consen 153 IRGCQLLHNLHKQ---HCGHPDIRLELAIKLKPVHNVMYSQLAAWMLFGVLDDVHSEFFIKFQPTDAVDGSSFSEEATES 229 (679)
T ss_pred cchhHHHHHHHHh---ccCCCcHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccchheEEeccCCCCCCcccCchhhhhh
Confidence 9999999999996 589999999999999999999999999999999999999999999543211 000000
Q ss_pred hh-----------ccccccc-----cCCChhhHH-HHHHHHhhhhHHHHHHHhCCCC-------CCCCccc---cccccC
Q 005396 271 YW-----------RQRYSLK-----DGIPSFLAN-IAGKILTTGKYLNVMRECGHSA-------QVPTSEN---SKLLSF 323 (698)
Q Consensus 271 ~W-----------~~~y~l~-----~~vP~Fl~~-~a~~Il~~GK~l~~Lr~~~~~~-------~~p~~e~---~~~~~f 323 (698)
.- -..|.+. ...|.|.+- .+.++|+.|+...+.+.-.... +.|..|. ..+. +
T Consensus 230 L~vhsLTgi~l~~l~D~rl~~E~nm~a~~~~~sl~~~s~~l~v~~~~s~~~~~R~~~~i~F~~~~~~~~e~eld~dlt-~ 308 (679)
T KOG2065|consen 230 LLVHSLTGIALKNLEDYRLQYEVNMSALPGFFSLVLASKVLFVGQTVSVFKMGRNVKVINFKTDPLAAKEAELDSDLT-Y 308 (679)
T ss_pred hhhcccchhhhhchhhhhHHHHHhhhccccceeeeccccceeeccchHHHhhccceeeeeccCCchhhHHhhccccch-h
Confidence 00 0113331 245777766 8888899998888876432110 1111111 0010 1
Q ss_pred CC-----------------------chhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhHhHhccCcchHHHHHHHH
Q 005396 324 GS-----------------------NHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIA 380 (698)
Q Consensus 324 ~~-----------------------~~~~~~~I~~~~~~as~~Ll~ll~~~~~L~~~L~~l~~~fLL~~Gdf~~~f~~~~ 380 (698)
|+ ...|...|+..++.|+.+||++.+++.+|.+||+.||+|||||+|||+..|++.+
T Consensus 309 G~ll~~~Ed~f~aml~dLk~~~~f~~~~fE~vVd~ir~~va~hLw~l~V~e~DL~gqlk~iKDffLLgrGeffq~F~~~~ 388 (679)
T KOG2065|consen 309 GQLLSGREDEFFAMLVDLKNEDTFNVFRFEKVVDDIRNYVAAHLWELAVNEVDLEGQLKLIKDFFLLGRGEFFQEFCSQM 388 (679)
T ss_pred hhhcCCChHHHHHHHHhhhcCCceeeeeHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHHHHHHHHHhcccHHHHHHHHHH
Confidence 10 0346678999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccHHHHHHHHHHHHHhhhcccCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCCCCCcceeeE
Q 005396 381 REELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETF 460 (698)
Q Consensus 381 ~~~L~~~~~~~~~~~L~~~l~~al~~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~d~l 460 (698)
...|+.|++.....+++-.++.|...+.+..|.|-+.++..+..+.=.... +..+.+. +++ ......+..|||++
T Consensus 389 ~~~m~tpp~~~tE~dv~v~FqlaAtkt~~~dDkyl~~~sL~~~~~grs~~a---D~~~~~t-Gka-~ltsdtsvdGWdAl 463 (679)
T KOG2065|consen 389 VGTMETPPEERTEKDVTVSFQLAATKTGITDDKYLDKFSLICQRSGRSEPA---DTSDFNT-GKA-FLTSDTSVDGWDAL 463 (679)
T ss_pred HHHhhCCchhhcccccchhhhhhhhhccccccccccceEEEecccCCCCcc---chhhhcc-Ccc-cccCCCCccchhhh
Confidence 999999998888788888888887776666777766666555433200000 0000010 000 11224568999999
Q ss_pred EeeeecCCCcceeeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC----CchhhHHhHHHHHHHHHHHHHHH
Q 005396 461 SLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFN----ASGTAISRSSLLCRSMLKFINSL 536 (698)
Q Consensus 461 ~L~Y~v~wPL~lIit~~~l~~Y~~IFr~Ll~lk~~~~~L~~~w~~~~~~r~~~----~~~~~~~~~~~lr~~m~~Fv~~l 536 (698)
.|.|+|.|||+++|||.++++||.|||||+++||+++.|+++|...+..+... ..++.++ |.+|+.|.+|++|+
T Consensus 464 ~L~Y~v~WPl~llFtp~~~e~yn~VF~yLl~irr~Q~Elq~~WA~qm~r~h~~s~q~~d~~~I~--WRlRnhmaFl~~Nl 541 (679)
T KOG2065|consen 464 SLKYEVEWPLNLLFTPTTIERYNNVFRYLLIIRRYQYELQRVWAKQMWRAHSASDQPPDNKIIT--WRLRNHMAFLLNNL 541 (679)
T ss_pred ceeeEeccchheeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccch--HHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999998665321111 1122333 89999999999999
Q ss_pred HHHHHHHhccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 005396 537 LHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLP 616 (698)
Q Consensus 537 ~~Y~~~~VIe~~w~~~~~~l~~a~~~d~l~~~H~~fL~~i~~~c~L~~~~l~~~l~~il~~c~~F~~~~~~~~~~~~~~~ 616 (698)
|||++.||||++|..++..|+...|++.+..+|+.||.+++.+|||...++..++.+|+++|.+||+++..-.
T Consensus 542 QyYiQVDVlESQf~~L~~~I~s~~DFe~i~~aH~~fLsnllsqsFll~~pV~~~L~~i~~lC~~Fcn~~~Q~~------- 614 (679)
T KOG2065|consen 542 QYYIQVDVLESQFGILMNVIKSRSDFEVIQRAHTVFLSNLLSQSFLLNEPVYGTLLKIFGLCEKFCNHMTQTK------- 614 (679)
T ss_pred heeeeehhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhccC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999998774211
Q ss_pred CCCCCCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhccccccchHHHHHHHHhccCC
Q 005396 617 KLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGF 696 (698)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~L~~~~~~~~~~~~L~~ll~rld~ 696 (698)
+. .+..+++++.+.+.|+++...|+++|++. ++....+.|+|+|+||||
T Consensus 615 -~P-----------------------------~d~~~~el~~l~e~F~~qs~sL~~iL~sv-k~~q~~~~L~qlLLRLdf 663 (679)
T KOG2065|consen 615 -DP-----------------------------SDDLEDELDQLNESFGVQSASLIQILVSV-KSAQCLGPLSQLLLRLDF 663 (679)
T ss_pred -CC-----------------------------cccchHHHHHHHHHhhhhHHHHHHHHHHc-cccccccHHHHHHHHhch
Confidence 00 01124678899999999999999999996 678889999999999999
Q ss_pred CC
Q 005396 697 DK 698 (698)
Q Consensus 697 n~ 698 (698)
|+
T Consensus 664 N~ 665 (679)
T KOG2065|consen 664 NC 665 (679)
T ss_pred hH
Confidence 96
No 3
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin. The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.
Probab=100.00 E-value=3.2e-68 Score=606.97 Aligned_cols=505 Identities=29% Similarity=0.560 Sum_probs=354.6
Q ss_pred HHHHHhcCCCCCceeeecccccCCCCCCCCCccceEecCC-----CCHhHHHHHHHHHHHHhHHHHHHHHHhhhcCC--C
Q 005396 60 DLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDAS-----MDLALQEMAKRIFPLCESFVLTGQFVESRSQF--K 132 (698)
Q Consensus 60 dLL~~L~G~~g~~~~~~~~~~~~~~~~~~~~~~~f~i~~~-----~~~sl~~l~~~il~lg~~~~~l~~fv~~~~~~--~ 132 (698)
|+|++|+|++|.+|++++. ...|.+.+. +++++++++++++++|+.|++|++|++..... .
T Consensus 1 dll~~L~G~~s~~f~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~i~~~g~~~~~l~~~i~~~~~~~~~ 68 (542)
T PF04130_consen 1 DLLYALQGVESTFFIWDKD------------SDRFELRPNISSHLSPPSLRSILNEILEIGTLYRRLRSFIERVSSSSSE 68 (542)
T ss_dssp HHHHHHTT---SSSEEETT-------------TEEE--S----TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTS----S
T ss_pred CHHHHccCCCCceEEEeCC------------CCeEEECCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Confidence 7999999999999999982 245666554 68999999999999999999999999975443 4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCcHHHHHHhhhhHHHHHHHHHHHHHHh----ccCCCcchhHHHHH
Q 005396 133 NGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKA----SANNFTGSAVLNLL 207 (698)
Q Consensus 133 ~g~v~~Al~~~l~~~L~~y~~~v~~lE~~~~~-~~lsL~~L~~~~~~~~~~l~~L~~i~~~~----~~~~~~g~~lL~~L 207 (698)
.|++.+|||++++++|.+|+..|..+|.++.. +.+||..+...++|+...++.|++|+.++ ..+..+|+.||+.|
T Consensus 69 ~~~~~~a~~~~l~~~L~~y~~~l~~le~~~~~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~g~~lL~~L 148 (542)
T PF04130_consen 69 RGPTLQAFASALSSILQEYREFLSELEESILSNGSLSLLQLLAQLRPWFRRLEALADLIQEIIQLSLSQNLRGGQLLSIL 148 (542)
T ss_dssp -SHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TT--HHHHHHHTHHHHHHHHHHHHHHHHH----HHHT--THHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcHHHHHHHH
Confidence 89999999999999999999999999999876 78999999999999999999999999987 33578999999999
Q ss_pred HHHH-HHccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhceecCCCCcceEeeCCCcccccchhhhcccccc-ccCCChh
Q 005396 208 QSQA-KAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKDYDAKYWRQRYSL-KDGIPSF 285 (698)
Q Consensus 208 ~~~~-~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~~~d~~~~~W~~~y~l-~~~vP~F 285 (698)
|+.+ ...+|++..++++..|+.++++||++++..||.+|++.||++||||+.+++.....++++|+++|.+ .+.+|.|
T Consensus 149 ~~~~~~~~~g~~~~~~~l~~ll~~~~~p~l~~l~~Wl~~G~l~D~~~EFfI~~~~~~~~~~~~~~w~~~f~l~~~~~P~f 228 (542)
T PF04130_consen 149 YERIYHQQSGDPELRKILQRLLNRCLQPYLRMLDSWLYRGELDDPYDEFFIQRNKESNSESSEDFWDDRFVLRESRVPSF 228 (542)
T ss_dssp HHHH---HS--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTS-SSEEE----------------EEE-GGGS-TT
T ss_pred HHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccceeEeecccccCcccchhhccCEEECcccCChh
Confidence 9987 3368999999999999999999999999999999999999999999998421223468999999999 6789999
Q ss_pred hHH-HHHHHHhhhhHHHHHHHhCCCCCCCCccccc---------------cccC--CCchhHHHHHHHHHHHHHHHHHHH
Q 005396 286 LAN-IAGKILTTGKYLNVMRECGHSAQVPTSENSK---------------LLSF--GSNHHYLECVKVAYEFASGELLNL 347 (698)
Q Consensus 286 l~~-~a~~Il~~GK~l~~Lr~~~~~~~~p~~e~~~---------------~~~f--~~~~~~~~~I~~~~~~as~~Ll~l 347 (698)
++. +|++|+.+||++++||.|+............ ...+ .....+.+.|++++..+++.++++
T Consensus 229 l~~~~a~~Il~~Gk~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~ 308 (542)
T PF04130_consen 229 LSKDLAEKILEIGKSLRLLRSCNPEHEWCSDQELSSDLCLSDKESSESSSLQPFEPLDQDKLESKIESQYKLVNKSLLDL 308 (542)
T ss_dssp S-HHHHHHHHHHHHHHHT------S------TT-SHHH----HHHHHHHHHHT-SS--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHhccccccchhccchhhhhhhhhhhhhHHHhcccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 954 9999999999999999998764321110000 0011 122567789999999999999999
Q ss_pred HHhhhcHHHHHHHHhHhHhccCcchHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhhcccCCCCCccceeeccccH
Q 005396 348 IKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSL 427 (698)
Q Consensus 348 l~~~~~L~~~L~~l~~~fLL~~Gdf~~~f~~~~~~~L~~~~~~~~~~~L~~~l~~al~~s~~~~d~~~~~l~~~l~~~~l 427 (698)
++++++|.+||+++|+||||++|||+..|++.+++.+.++..+.+...++..++.+++.......+...... . .....
T Consensus 309 l~~~~~l~~~l~~l~~~~Ll~~gdf~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~ 386 (542)
T PF04130_consen 309 LFEDYNLLEHLKALRDFFLLGDGDFADSFLESLFEKLESPSSRSSDSNLNSILQEALRASSADWSDESSNLR-S-GEISS 386 (542)
T ss_dssp HHHHS-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHSS---TTHHHHHHHHHHHHHHHTT---TTSGGGEE-E------
T ss_pred HHHhccHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHhCccccccchhhhh-h-ccccc
Confidence 999999999999999999999999999999999999999888888888888888888765433222110000 0 00000
Q ss_pred HHHHHhhhccccccCCCCCCCCCCCCCcceeeEEeeeecCCCcceeeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005396 428 LKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQ 507 (698)
Q Consensus 428 ~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~d~l~L~Y~v~wPL~lIit~~~l~~Y~~IFr~Ll~lk~~~~~L~~~w~~~~ 507 (698)
...... ...... ........+.+..+|+.+.|+|++||||++|||+++|.+|++||+|||++|++++.|+++|...+
T Consensus 387 ~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~l~L~y~~~~PL~lilt~~~~~~Y~~IF~~Ll~lk~~~~~L~~~w~~~~ 463 (542)
T PF04130_consen 387 STSLSS--NLSSND-SSSRNSNNSSSLEGWDALTLSYKVPWPLNLILTPSVMEKYNRIFRFLLQLKRAEWALQSVWRQLR 463 (542)
T ss_dssp ----------------------------TTTTEEEEE---TTGGGTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccchh--hhhhhh-hhcccccccccccccceeEEEecCCccHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 000000 00111234567899999999999999999999999999999999999999999999999999876
Q ss_pred hcc-cc----CCchhhHHhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhc
Q 005396 508 GAR-AF----NASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECL 581 (698)
Q Consensus 508 ~~r-~~----~~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~w~~~~~~l~~a~~~d~l~~~H~~fL~~i~~~c~ 581 (698)
..+ .. .......++.+.+|++|.||++++++|++.+||++.|.+|.++|+++.|+|+|+++|++||++|+++||
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~lr~~m~~fv~~l~~y~~~~vI~~~~~~f~~~l~~~~~~d~l~~~H~~yL~~i~~~~f 542 (542)
T PF04130_consen 464 RLSRKFGKPDRQSRPQLRRLQILRHRMQHFVNSLQSYLQFDVIEPSWSEFMEKLEKAKSLDELIEAHDDYLDRILRRCF 542 (542)
T ss_dssp SGGG--------S-SHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Confidence 421 11 112245778899999999999999999999999999999999999999999999999999999999997
No 4
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=100.00 E-value=1.8e-53 Score=477.56 Aligned_cols=519 Identities=26% Similarity=0.428 Sum_probs=437.0
Q ss_pred cchHHHHHHHHHHHhcCCCCCceeeecccccCCCCCCCCCccceEecCC--CCHhHHHHHHHHHHHHhHHHHHHHHHhhh
Q 005396 51 GVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDAS--MDLALQEMAKRIFPLCESFVLTGQFVESR 128 (698)
Q Consensus 51 ~~qE~~lv~dLL~~L~G~~g~~~~~~~~~~~~~~~~~~~~~~~f~i~~~--~~~sl~~l~~~il~lg~~~~~l~~fv~~~ 128 (698)
.+.|..+|++++|++.|+.|.++.++.... .|.+... +..++..++..+.++|.+|.++..|+...
T Consensus 201 ~i~e~~lvk~v~yvl~gv~~~~~~~~~~~~------------~~~~k~~~~~~~~~~~l~~~lSelg~l~~~~~~~~~~~ 268 (879)
T KOG2000|consen 201 LIKEEDLVKDVLYVLQGVDGALFSFDSELE------------CFVVKGPVHLPRGISGLLYLLSELGVLYQRVSTFSDQL 268 (879)
T ss_pred cchHHHHHHHHHHHHhhhhhceeecccHHh------------hhhhhccccchhhHHHHHHHHHHHhHHHHhhhhhcchh
Confidence 489999999999999999999999877322 2222221 55677888999999999999999999875
Q ss_pred cC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----------CCcHHHHHHhhhhHHHHHHHHHHHHHHhc
Q 005396 129 SQ---FKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLG-----------RLSIQGLWFYCQPMLGSMQAVSAVIHKAS 194 (698)
Q Consensus 129 ~~---~~~g~v~~Al~~~l~~~L~~y~~~v~~lE~~~~~~-----------~lsL~~L~~~~~~~~~~l~~L~~i~~~~~ 194 (698)
.. ...|++.|||++++++.|++|+..|..+..++... .++|..++.++.....+|++++.++..+.
T Consensus 269 ~l~~~~~~g~v~qaf~~~l~~elq~y~~~v~~~~s~~~~~~~~~~~~~~~~~~~l~r~la~~~~~~~rl~i~~~l~e~~~ 348 (879)
T KOG2000|consen 269 VLDNPYCIGLVGQAFTAELSDELQYYYALVRSLLTSLSRNKIGIVNLKLVSEVTLLRLLAWIYEPGIRLQILCKLVEHCQ 348 (879)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccceecccccchhhhhhhhhHHHHHHHHhhcchhhhHHHHHHHHhc
Confidence 32 24899999999999999999999999888766221 14677788887778889999999999997
Q ss_pred cCCCcchhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhceecCCCCcceEeeCCCcccccchhhhcc
Q 005396 195 ANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKDYDAKYWRQ 274 (698)
Q Consensus 195 ~~~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~~~d~~~~~W~~ 274 (698)
..+|+.++..++... .+|++.++.+...++...+.||.+++..||+.|.+.|+|+||||.+++....-..+.+|++
T Consensus 349 --~~~g~~l~~~~~~f~--~~g~~~i~~i~~~lL~~~~~p~~~~i~~wi~~G~l~D~y~EFfV~~~~~~~~~~~d~lw~~ 424 (879)
T KOG2000|consen 349 --VPKGGKLLSAVHEFL--THGDLYVHPIVFSLLHSSCSPYYRMLRNWLLEGELRDTYGEFFVAENPDPGSVKDDRLWHD 424 (879)
T ss_pred --ccCCCcchHHHHHHH--HhCCCcccHHHHHHhhhcchHHHHHHHHHHHcCcccccccceEEeccCCCCcccccccccc
Confidence 788999999998875 5999999999999999999999999999999999999999999999886321225789999
Q ss_pred cccc-ccCCChhhHH-HHHHHHhhhhHHHHHHHhCCCCCCCCccc--------c-ccccCCCchhHHHHHHHHHHHHHHH
Q 005396 275 RYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQVPTSEN--------S-KLLSFGSNHHYLECVKVAYEFASGE 343 (698)
Q Consensus 275 ~y~l-~~~vP~Fl~~-~a~~Il~~GK~l~~Lr~~~~~~~~p~~e~--------~-~~~~f~~~~~~~~~I~~~~~~as~~ 343 (698)
.|.+ .+++|+|++. +|.||+.|||++|+++.|+++..|-..-. . .-..++....+...|+++|....++
T Consensus 425 ~~~l~~~~lP~Fi~~~~a~kI~l~GKsinfL~~~c~e~~w~~e~~~~~~~~~s~~~~l~~~~~~~l~~~v~~ay~e~inh 504 (879)
T KOG2000|consen 425 GYKLRYEMLPSFIPMELAQKILLIGKSINFLRDCCNEQTWSDEIDAKASVEESSTRDLEYASDVGLLGSVSEAYSEIVNH 504 (879)
T ss_pred ccccchhhcccccCHHHHHHHHHhhhHHHHHHHhccccccccchhHHHHHhhhhhhhhccCCChhHHHHHhhhhccchHH
Confidence 9999 5899999998 99999999999999999988654422100 0 1234455567888999999999999
Q ss_pred HHHHHHhhhcHHHHHHHHhHhHhccCcchHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh-hcccCCCCCccceee
Q 005396 344 LLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRST-AAAADPCHEDLTCSV 422 (698)
Q Consensus 344 Ll~ll~~~~~L~~~L~~l~~~fLL~~Gdf~~~f~~~~~~~L~~~~~~~~~~~L~~~l~~al~~s-~~~~d~~~~~l~~~l 422 (698)
|.+++.+.+++.+|+.++|+|.|+|+|||+..+|+.+.+.+..|...+..+.|+..++.|+|.+ +++.||-
T Consensus 505 l~~ll~~~~~l~dh~~a~k~ylllGqgDfid~lme~~~n~l~~p~~tl~~~~lt~~ldsaiR~s~na~yd~~-------- 576 (879)
T KOG2000|consen 505 LNDILEEVISLLDHNQALKRYLLLGQSDFIDVLMEEKKNILARPRDTLPEHKLTGVLDSAVRSSLNAQYDDR-------- 576 (879)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhccchHHHHHHHhhcchhcCcchhhhHhHHHHHHHHHHhhhhccccCCh--------
Confidence 9999999999999999999999999999999999999999999999999999999999999998 7766542
Q ss_pred ccccHHHHHHhhhccccccCCCCCCCCCCCCCcceeeEEeeeecCCCcceeeChHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 005396 423 ERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQL-CG 501 (698)
Q Consensus 423 ~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~d~l~L~Y~v~wPL~lIit~~~l~~Y~~IFr~Ll~lk~~~~~L-~~ 501 (698)
+.+.++ +.+.. ....+..|||.+.++|.+.-|+++|+|++++.+|-+||+|||++||+++.| ..
T Consensus 577 ---~vL~Rl------d~~~~------~~~~gd~gwdvfsl~y~v~~p~s~v~t~~~~~~ylrif~flwrlkR~e~~L~~~ 641 (879)
T KOG2000|consen 577 ---DVLNRL------DVRVL------KLSHGDDGWDVFSLDYAVDGPLSLVLTRELMLKYLRVFNFLWKLKRVEFLLELH 641 (879)
T ss_pred ---hhhhhh------hhHhh------hccCCcccceeeeecceecccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 22211 113467899999999999999999999999999999999999999999999 78
Q ss_pred HHHHhhh-cc--cc--C----CchhhHHhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHhccCCC-HHHHHHHHHH
Q 005396 502 AWQVHQG-AR--AF--N----ASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKS-IDEVIQHHDF 571 (698)
Q Consensus 502 ~w~~~~~-~r--~~--~----~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~w~~~~~~l~~a~~-~d~l~~~H~~ 571 (698)
+|+.++. .+ .. . .....+++++.+..+|.||+.++|+|+.++|||.+|..|..+++.+.+ .|..+++|+-
T Consensus 642 i~k~~m~~~~~~~~~~~~~i~~~~~~~~r~h~~~~E~~~f~sq~q~y~~f~vie~~wk~l~~~~~~a~~~ld~~~eah~~ 721 (879)
T KOG2000|consen 642 IWKMLMKDCNVAKRDRLLKIPEISCALHRCHILTNEMNHFISQMQYYILFEVIECSWKELSKKMEPARNPLDFQLEAHRP 721 (879)
T ss_pred HHHhhhhhhcccccchhcchHHHHhhhhhhhhHHHHHHHHHHhhhhccccchhhcChHHHHHHHhhccCchHHHHhhccc
Confidence 9998873 11 11 1 112345678888999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHhcCCC-hH---HHHHHHHHHHHHHHHHHHHHHH
Q 005396 572 FLDKCLRECLLHL-PD---LLKKVERLKSLCLQYAAATQWL 608 (698)
Q Consensus 572 fL~~i~~~c~L~~-~~---l~~~l~~il~~c~~F~~~~~~~ 608 (698)
|+++|.-.|++.+ ++ +...+..++..++.+......+
T Consensus 722 ~~~ti~i~~~l~~~~~~~s~~~~l~~l~e~Il~~~~~~~~~ 762 (879)
T KOG2000|consen 722 FLDTISIRGILQEKASVESIEHSLSALLELILNLAELQSSF 762 (879)
T ss_pred cccceeecccccCcccchhhHHhHHHHHHHHhhhhcccccc
Confidence 9999999999996 33 6788888888888888765443
No 5
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=1e-26 Score=243.99 Aligned_cols=609 Identities=18% Similarity=0.176 Sum_probs=388.1
Q ss_pred cchHHHHHHHHHHHhcCCCCCceeeecccccCCCCCCCCCccceEecCCCCHhHHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 005396 51 GVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQ 130 (698)
Q Consensus 51 ~~qE~~lv~dLL~~L~G~~g~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~sl~~l~~~il~lg~~~~~l~~fv~~~~~ 130 (698)
-++|-..+.+-++.+-|...-|+. .. ..|++.. ..-..+.....+-.+..++.+.-+|.....+..|+.....
T Consensus 289 lvtepprifeqlWllggtdkLFif-ih----idgkcqd--rhlialphlahpcdnfaleqiaalghnafgLlafidekmg 361 (1121)
T KOG4344|consen 289 LVTEPPRIFEQLWLLGGTDKLFIF-IH----IDGKCQD--RHLIALPHLAHPCDNFALEQIAALGHNAFGLLAFIDEKMG 361 (1121)
T ss_pred ccCCCCcHHHHHHHhcCCceEEEE-Ee----ecceeee--eeeeeccccccchHHHHHHHHHHhhhhHHHHHhccchhcc
Confidence 456666778888888887765543 33 2333321 1122233344566788899999999999999999876431
Q ss_pred CC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCcHHHHHHhhhhHHHH--HHHHHH
Q 005396 131 FK------------------NGLVNHAFAASLRALLLDYEAMVAQLEHQFRL--GRLSIQGLWFYCQPMLGS--MQAVSA 188 (698)
Q Consensus 131 ~~------------------~g~v~~Al~~~l~~~L~~y~~~v~~lE~~~~~--~~lsL~~L~~~~~~~~~~--l~~L~~ 188 (698)
.+ .=..-+||.-++-+.--.|.+.++.++.-+.+ ..+.|..+.-.+.|++.. +..+..
T Consensus 362 hepcllleglfmfpkkascafFefdkAfmralvkdfisfkeelaeIckcianndqnflLadVVdaLadmlelrhiidlHk 441 (1121)
T KOG4344|consen 362 HEPCLLLEGLFMFPKKASCAFFEFDKAFMRALVKDFISFKEELAEICKCIANNDQNFLLADVVDALADMLELRHIIDLHK 441 (1121)
T ss_pred CCchHhhhhcccccCccccchhhHHHHHHHHHHHHHhhhHHHHHhHHhhhhcCCceeeHHHHHHHHHHHHhhHHHHHHHH
Confidence 11 11334555555555444566777788765433 356666666566665543 222332
Q ss_pred HHHHh--c-c----CCCcchhHHHHHHHHHHHc--cCC--hHH-HHHHHHHHHHHHHHHHHHHHHHHhhceecCCCCcce
Q 005396 189 VIHKA--S-A----NNFTGSAVLNLLQSQAKAM--AGD--NTV-RSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFF 256 (698)
Q Consensus 189 i~~~~--~-~----~~~~g~~lL~~L~~~~~~~--~Gd--~~~-~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~Dp~~EFf 256 (698)
+.-.- + + .......|++-+++.+..+ .|+ +.. ..++-.|......||++.+..|+..|.++|...||.
T Consensus 442 lffhGVaetppdeffavgardLlnpickaiiaYddrgeadeakntlilFsiefeehfpqLqlldElaedghLddGaaefi 521 (1121)
T KOG4344|consen 442 LFFHGVAETPPDEFFAVGARDLLNPICKAIIAYDDRGEADEAKNTLILFSIEFEEHFPQLQLLDELAEDGHLDDGAAEFI 521 (1121)
T ss_pred HhhcccccCCCchhhhhhHHHHHHHHHHHHHHhccccccCcccceEEEEEEehhhhhHHHHHHHHHHHhccccccHHHHH
Confidence 22110 0 0 1122346899999876532 343 222 223445667788999999999999999999999999
Q ss_pred EeeCCCcccccchhhhc---------------ccccc---------------ccCCChhhHHHHHHHHhhhhHHHHHHH-
Q 005396 257 IAEDKSLLKDYDAKYWR---------------QRYSL---------------KDGIPSFLANIAGKILTTGKYLNVMRE- 305 (698)
Q Consensus 257 I~~~~~~~~d~~~~~W~---------------~~y~l---------------~~~vP~Fl~~~a~~Il~~GK~l~~Lr~- 305 (698)
|..+.+..- ....+|- .+|.+ ++-+-+|..+.-..|..+||....++.
T Consensus 522 iarlknrlv-kHrdfqyaphqklataekfeneekmcdiadassgraagedhlqefiVeFckeedaniimagkrkqllgnl 600 (1121)
T KOG4344|consen 522 IARLKNRLV-KHRDFQYAPHQKLATAEKFENEEKMCDIADASSGRAAGEDHLQEFIVEFCKEEDANIIMAGKRKQLLGNL 600 (1121)
T ss_pred HHHHhcccc-ccchhhhccHHHHHHHHHhhhHHHHhhhhccccccccChHHHHHHHHHHHHHHHHHHHHhhhHHHhhccc
Confidence 987754320 0112220 12221 112335666655578899999999884
Q ss_pred -hCCCC----------C-CCC-------------------------------ccc----------cc------------c
Q 005396 306 -CGHSA----------Q-VPT-------------------------------SEN----------SK------------L 320 (698)
Q Consensus 306 -~~~~~----------~-~p~-------------------------------~e~----------~~------------~ 320 (698)
|..+- + +|. .|. +. .
T Consensus 601 qcaEddKOGaeafdaeqscpLYqLfLEhalergehgddlcspntLsEmlqankEiqLmklhdeaeshffalddVhcgada 680 (1121)
T KOG4344|consen 601 QCAEDDLCLAEAFDAEQSCPLYQLFLEHALERGEHGDDLCSPNTLSEMLQANKEIQLMKLHDEAESHFFALDDVHCGADA 680 (1121)
T ss_pred cccchhhHHHHhhhhhhcCcHHHHHHHHHHHhccccccccCHHHHHHHHhhccccchhhHHHHHHHhHHHHhhccCcccc
Confidence 43221 0 110 000 00 0
Q ss_pred ccCCC--------------------------c---------hhHHHHHHHH--HHHHHHHHHHHHHhhhcHHHHHHHHhH
Q 005396 321 LSFGS--------------------------N---------HHYLECVKVA--YEFASGELLNLIKERYDLMGKLRSIKR 363 (698)
Q Consensus 321 ~~f~~--------------------------~---------~~~~~~I~~~--~~~as~~Ll~ll~~~~~L~~~L~~l~~ 363 (698)
..|.. + .-+...|+++ |-..+..||.-+.+++.+.+.|++.+.
T Consensus 681 idfadepeedkDfedkfacgdvcvdrsqeirncelFaiflqpclephidkQrerLdccgnLManikKdlelsecLQakre 760 (1121)
T KOG4344|consen 681 IDFADEPEEDKDFEDKFACGDVCVDRSQEIRNCELFAIFLQPCLEPHIDKQRERLDCCGNLMANIKKDLELSECLQAKRE 760 (1121)
T ss_pred cchhhCCCccccHHHhhccccccccccccceehhhHHHHhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 00100 0 0123568888 666788999999999999999999999
Q ss_pred hHhccCcchHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhhcccC---CCCCccceeeccccHHH-HHHhhh----
Q 005396 364 YLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAAD---PCHEDLTCSVERSSLLK-RMATLK---- 435 (698)
Q Consensus 364 ~fLL~~Gdf~~~f~~~~~~~L~~~~~~~~~~~L~~~l~~al~~s~~~~d---~~~~~l~~~l~~~~l~~-~l~~~~---- 435 (698)
||++..||.+..|.-..+..+.....+.....++..|+.|..-. .+- |+...+.+.+++-+-.. .|.++.
T Consensus 761 ffeaegedlmrdfwlaiedaIRakckeqnVaekmrfLqeamgle--krYlfvedsnaLfirfEnvdnakkaLgsvltskl 838 (1121)
T KOG4344|consen 761 FFEAEGEDLMRDFWLAIEDAIRAKCKEQNVAEKMRFLQEAMGLE--KRYLFVEDSNALFIRFENVDNAKKALGSVLTSKL 838 (1121)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhhh--hcccccccccceeEEeecccchhhhcchhhhhhh
Confidence 99999999999999999988776666666666666777765311 122 23333444443211000 000000
Q ss_pred -------------ccccccCCCCCCCCCCCCCcceeeEEeeee--cCCCcceeeChHHHHHHHHHHHHHHHHHHHHHHHH
Q 005396 436 -------------GVEIKTSSDSVDLEQPVSITGLETFSLSYK--VQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLC 500 (698)
Q Consensus 436 -------------~l~~~~~~~~~~~~~~~~~~~~d~l~L~Y~--v~wPL~lIit~~~l~~Y~~IFr~Ll~lk~~~~~L~ 500 (698)
-+.+...+.- ....-....++|++.|+|+ ++||..+|||+.+|..||.+|+.|+++|++.|.|.
T Consensus 839 cavllphypqlahylhvklisqi-nsnsikvveaLdaieLdferpmamhqdiiislacmkdYNqVflLlLkiKWAkwkLd 917 (1121)
T KOG4344|consen 839 CAVLLPHYPQLAHYLHVKLISQI-NSNSIKVVEALDAIELDFERPMAMHQDIIISLACMKDYNQVFLLLLKIKWAKWKLD 917 (1121)
T ss_pred hhhhcccchhhhhHHHHHHHhhh-cccchhhhhhhhheeecccCCcccchheEecHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000000000 0011223678999999999 99999999999999999999999999999999999
Q ss_pred HHHHHh---hh----cc---------------ccCCchhhHHhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHhcc
Q 005396 501 GAWQVH---QG----AR---------------AFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQT 558 (698)
Q Consensus 501 ~~w~~~---~~----~r---------------~~~~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~w~~~~~~l~~ 558 (698)
++-... +. .| +....+..++|...+|.+++|||++|+.|+|..|+++...+|+.++.+
T Consensus 918 nllfgelvsmaekpRakegliheqdtvaqfcapkdliglqIhRleilRfkLiffiNnLHahIMeailhStgleFehqieE 997 (1121)
T KOG4344|consen 918 NLLFGELVSMAEKPRAKEGLIHEQDTVAQFCAPKDLIGLQIHRLEILRFKLIFFINNLHAHIMEAILHSTGLEFEHQIEE 997 (1121)
T ss_pred hhhhhhhhhhhhhhhhhccccccccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhh
Confidence 854321 10 11 111235568999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCChhHHHHHHh
Q 005396 559 AKSIDEVIQHHDFFLDKCLRECLLHL--PDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKL 636 (698)
Q Consensus 559 a~~~d~l~~~H~~fL~~i~~~c~L~~--~~l~~~l~~il~~c~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (698)
|+|+|+++..|++||..|...|+|++ +.+..+|.+|+.+++.|+.-|+...+ -+ +....
T Consensus 998 aKdldeLiiiHdehLatihdhClLrdefkafkeAidkifhLalmfadeWqtcas-cm--hagda---------------- 1058 (1121)
T KOG4344|consen 998 AKDLDELIIIHDEHLATIHDHCLLRDEFKAFKEAIDKIFHLALMFADEWQTCAS-CM--HAGDA---------------- 1058 (1121)
T ss_pred hcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhh-hh--ccccc----------------
Confidence 99999999999999999999999997 57788999999999999999997653 11 21110
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhcc--ccccchHHHHHHHHhcc
Q 005396 637 RSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSS--SQAEPYLTHLAQLVLGV 694 (698)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~L~~~--~~~~~~~~~L~~ll~rl 694 (698)
-+..+.+.+. . .+.-+.-.+.|.++..+++..++.- ....++...|+-++..=
T Consensus 1059 KOGdesIedd----e-iDdsetqrrsfencalflVaeiekavcRchfmhadiLalllhag 1113 (1121)
T KOG4344|consen 1059 LCLDESIEDD----E-IDDSETQRRSFENCALFLVAEIEKAVCRCHFMHADILALLLHAG 1113 (1121)
T ss_pred hhhhhhhhcc----c-ccchHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHhcC
Confidence 0000000000 0 0000112245888888888888763 34567777777766543
No 6
>PF14609 GCP5-Mod21: gamma-Tubulin ring complex non-core subunit mod21
Probab=38.21 E-value=4e+02 Score=29.58 Aligned_cols=63 Identities=10% Similarity=0.138 Sum_probs=43.5
Q ss_pred cchHHHHHHHHHHHhcCCCCCceeeecccccCCCCCCCCCccceEecC---CCCHh-HHHHHHHHHHHHhHHHHHHHHHh
Q 005396 51 GVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDA---SMDLA-LQEMAKRIFPLCESFVLTGQFVE 126 (698)
Q Consensus 51 ~~qE~~lv~dLL~~L~G~~g~~~~~~~~~~~~~~~~~~~~~~~f~i~~---~~~~s-l~~l~~~il~lg~~~~~l~~fv~ 126 (698)
.+.|+-++.|.+++|+|++|-+|...+ ..+...| +++.+ ++.++..+...|..+-.+++-..
T Consensus 179 riseqs~~~e~IymL~Gy~~~~f~~ve--------------~~l~~~P~~~~ls~~i~~~il~~~~~~G~~l~~~nqva~ 244 (653)
T PF14609_consen 179 RISEQSWKYEIIYMLMGYQGHIFTCVE--------------EILRHAPQNQHLSYWIQQHILSNFCNWGRELHIMNQVAN 244 (653)
T ss_pred eecccchHHHHHHHHhcCcchhhhhhH--------------hhhcccccccchHHHHHHHHHHHhhccccchHHHHHHhC
Confidence 678899999999999999999996544 1222222 23333 36677778888888777776444
Q ss_pred h
Q 005396 127 S 127 (698)
Q Consensus 127 ~ 127 (698)
+
T Consensus 245 ~ 245 (653)
T PF14609_consen 245 E 245 (653)
T ss_pred C
Confidence 3
No 7
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=23.85 E-value=1.2e+02 Score=36.53 Aligned_cols=120 Identities=11% Similarity=-0.056 Sum_probs=88.1
Q ss_pred CcceeeEEeeeecCCCcceeeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-ccccCCchhhHHhHHHHHHHHHH
Q 005396 454 ITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQ-G-ARAFNASGTAISRSSLLCRSMLK 531 (698)
Q Consensus 454 ~~~~d~l~L~Y~v~wPL~lIit~~~l~~Y~~IFr~Ll~lk~~~~~L~~~w~~~~-~-~r~~~~~~~~~~~~~~lr~~m~~ 531 (698)
..++|.-...|++..++.-.++.-. . ..+|.++|++.+-.|.+.+.|.... . ++....... ..-..|..|.|
T Consensus 589 ~~~gd~gwdvfsl~y~v~~p~s~v~-t--~~~~~~ylrif~flwrlkR~e~~L~~~i~k~~m~~~~---~~~~~~~~~i~ 662 (879)
T KOG2000|consen 589 LSHGDDGWDVFSLDYAVDGPLSLVL-T--RELMLKYLRVFNFLWKLKRVEFLLELHIWKMLMKDCN---VAKRDRLLKIP 662 (879)
T ss_pred ccCCcccceeeeecceecccHHHHh-h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc---ccccchhcchH
Confidence 4677888999999999999887433 2 8999999999999999999999773 2 221110000 03356778999
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcC
Q 005396 532 FINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLL 582 (698)
Q Consensus 532 Fv~~l~~Y~~~~VIe~~w~~~~~~l~~a~~~d~l~~~H~~fL~~i~~~c~L 582 (698)
++.+..++....+.|-+| |..+++--..++ +++.|-.++...+..-..
T Consensus 663 ~~~~~~~r~h~~~~E~~~--f~sq~q~y~~f~-vie~~wk~l~~~~~~a~~ 710 (879)
T KOG2000|consen 663 EISCALHRCHILTNEMNH--FISQMQYYILFE-VIECSWKELSKKMEPARN 710 (879)
T ss_pred HHHhhhhhhhhHHHHHHH--HHHhhhhccccc-hhhcChHHHHHHHhhccC
Confidence 999999999887766444 455555555555 999999999888876665
No 8
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=23.69 E-value=3.8e+02 Score=23.94 Aligned_cols=67 Identities=15% Similarity=0.279 Sum_probs=39.9
Q ss_pred eEecCCCCHhHHHHHHHHHHHHhHHHHHHHHHhhhcCC---CCCHHHHHH---HHHHHHHHHHHHHHHHHHHHhh
Q 005396 94 FQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQF---KNGLVNHAF---AASLRALLLDYEAMVAQLEHQF 162 (698)
Q Consensus 94 f~i~~~~~~sl~~l~~~il~lg~~~~~l~~fv~~~~~~---~~g~v~~Al---~~~l~~~L~~y~~~v~~lE~~~ 162 (698)
|.+...-+.|...+-++|+.+...| ++...|+.... ++|..+.+. -.++.-+|.+..+.+..||.++
T Consensus 30 ~t~qq~~~~ss~~LR~QILdLSkrY--VKaLAeEn~~~~dgp~~~smagYaDLKktiAVLLddiLqRl~kLE~kv 102 (138)
T PF15027_consen 30 YTFQQPRHQSSAELREQILDLSKRY--VKALAEENKNVVDGPYGASMAGYADLKKTIAVLLDDILQRLVKLESKV 102 (138)
T ss_pred heecCCCccChHHHHHHHHHHHHHH--HHHHHHHcCCCCCCCcchhhHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 3333333344456778899987655 45555654322 344444444 3456667788888888888765
No 9
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=21.05 E-value=2.9e+02 Score=22.44 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=28.3
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 005396 556 LQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQY 601 (698)
Q Consensus 556 l~~a~~~d~l~~~H~~fL~~i~~~c~L~~~~l~~~l~~il~~c~~F 601 (698)
+++--+++||+..|..++..+...+ ...+...++=++.+..-|
T Consensus 31 i~~~I~PEeIv~iH~~~v~~l~~~~---~~~v~~sld~LlEvm~~y 73 (77)
T PF08673_consen 31 IEKDISPEEIVEIHKSAVQELSPSL---PEDVLDSLDFLLEVMIGY 73 (77)
T ss_dssp HHTT--HHHHHHHHHHHHHHH-TTS----HHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHcccc---HHHHHHHHHHHHHHHHHc
Confidence 3455689999999999999887666 456666666666555544
No 10
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=20.76 E-value=5.5e+02 Score=25.10 Aligned_cols=86 Identities=13% Similarity=0.052 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhhhcCCCcHHHHHHhhhhHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHccCChHHHHHHHHHH
Q 005396 149 LDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMT 228 (698)
Q Consensus 149 ~~y~~~v~~lE~~~~~~~lsL~~L~~~~~~~~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll 228 (698)
-+|..-+.+||.|+......+.++...+..|..++.+-+--+..+ -++.+|-. ++|......+...++
T Consensus 11 ~~~~~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~slAl~~l---------~~S~iy~~---~~~y~~~~~It~~ll 78 (251)
T COG5415 11 TKYTADLSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLALTVL---------ALSYIYWE---YHGYRPYLVITALLL 78 (251)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---------HHHHHHhh---ccccchhHHHHHHHH
Confidence 457777888888876665555566655555555544322111111 12555553 678776666666666
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 005396 229 QCASNAYLGILERWVYEG 246 (698)
Q Consensus 229 ~~~~~py~~~l~~Wi~~G 246 (698)
-..+--.++..-.|++.-
T Consensus 79 gs~slymfrwal~~lye~ 96 (251)
T COG5415 79 GSGSLYMFRWALTKLYEF 96 (251)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 655555566677777643
No 11
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=20.28 E-value=5.4e+02 Score=21.88 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=42.2
Q ss_pred HHHHHHHHH----HhHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCcHHHHHHhhh
Q 005396 106 EMAKRIFPL----CESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFR--LGRLSIQGLWFYCQ 177 (698)
Q Consensus 106 ~l~~~il~l----g~~~~~l~~fv~~~~~~~~g~v~~Al~~~l~~~L~~y~~~v~~lE~~~~--~~~lsL~~L~~~~~ 177 (698)
+++.+|+.+ +..|..+..=...+-......-.+++|..|.......-..|..+|..+. .+...+..+...+|
T Consensus 3 ~Ll~~f~~~Qe~Ra~~Y~~~~~gf~~yl~~~~~~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~lQ 80 (97)
T PF14966_consen 3 ELLRRFFALQERRAQLYNRFEEGFKKYLRSGPEEAYRQLCHEITQEFSAISKEILAIEAELRDEHERPDLAELIRELQ 80 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 556666655 4555555443333222222345567788888888888888889998776 34444444444443
Done!