Query 005396
Match_columns 698
No_of_seqs 307 out of 867
Neff 8.6
Searched_HMMs 13730
Date Tue Mar 26 00:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005396.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005396hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rkta2 a.121.1.1 (A:83-205) H 27.4 1.3E+02 0.0094 23.3 8.7 66 181-249 5-70 (123)
2 d2hyja2 a.121.1.1 (A:83-200) P 20.1 1.7E+02 0.012 22.0 8.3 49 198-249 24-72 (118)
3 d1kxpd3 a.126.1.1 (D:405-473) 20.0 40 0.0029 23.4 3.1 40 546-588 8-57 (69)
4 d2hyec2 a.118.17.1 (C:55-401) 13.4 4E+02 0.029 24.1 10.3 64 529-598 279-343 (347)
5 d1pb6a2 a.121.1.1 (A:86-211) H 12.3 1.1E+02 0.0081 23.6 4.7 35 215-249 35-69 (126)
6 d1ldja2 a.118.17.1 (A:17-410) 9.8 3E+02 0.022 25.6 8.0 74 518-597 302-385 (394)
7 d2i10a2 a.121.1.1 (A:79-194) P 9.8 99 0.0072 23.5 3.4 62 186-250 11-73 (116)
8 d1w53a_ a.186.1.2 (A:) Phospho 9.7 3E+02 0.022 19.8 5.8 43 556-602 38-81 (84)
9 d2id3a2 a.121.1.1 (A:81-203) P 9.3 3.2E+02 0.023 20.6 6.6 49 198-249 24-72 (123)
10 d2g7sa2 a.121.1.1 (A:77-192) P 5.0 5.5E+02 0.04 18.5 8.1 50 197-249 22-71 (116)
No 1
>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=27.38 E-value=1.3e+02 Score=23.31 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhceec
Q 005396 181 GSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (698)
Q Consensus 181 ~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~ 249 (698)
..+.++..++..+.. .+-.+-.+.++......-||.++..+...+..-..-+...|..++..|.+.
T Consensus 5 ~~~~~~d~~~~~l~~---~~~~~~~~~~E~~~~a~Rdpeir~~~~~~~~~~~~~l~~~i~~g~~~Ge~~ 70 (123)
T d1rkta2 5 SISSYLDELTEGLRD---VADTLAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQ 70 (123)
T ss_dssp HHHHHHHHHHHHTTT---GGGSSHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHh---cCcchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 344555566666542 222233444454433467999999999999998888888888888888773
No 2
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=20.10 E-value=1.7e+02 Score=22.00 Aligned_cols=49 Identities=14% Similarity=0.033 Sum_probs=40.3
Q ss_pred CcchhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhceec
Q 005396 198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (698)
Q Consensus 198 ~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~ 249 (698)
..||-+.+..-+. ...|+.+++.+...+.....-+.+.|...+..|.+.
T Consensus 24 ~~GC~~~~~~~E~---~~~~~~ir~~l~~~~~~~~~~l~~~l~~a~~~G~i~ 72 (118)
T d2hyja2 24 PGGCLLTAALSEY---DGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELP 72 (118)
T ss_dssp TTSCHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCChhHhHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3478888777664 467889999999999999999999999999999773
No 3
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.02 E-value=40 Score=23.40 Aligned_cols=40 Identities=20% Similarity=0.527 Sum_probs=28.2
Q ss_pred cccHHHHHHHhcc----------CCCHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 005396 546 EPNWHVMHNRLQT----------AKSIDEVIQHHDFFLDKCLRECLLHLPDLL 588 (698)
Q Consensus 546 e~~w~~~~~~l~~----------a~~~d~l~~~H~~fL~~i~~~c~L~~~~l~ 588 (698)
+-.|.+|.++|.+ ...+.+|.+.|.+|-..| |-++.|++.
T Consensus 8 e~tFte~kkkL~e~lr~k~P~as~~~l~~mVekrsdfASkC---CsiNsPPlY 57 (69)
T d1kxpd3 8 ENTFTEYKKKLAERLKAKLPDATPKELAKLVNKRSDFASNC---CSINSPPLY 57 (69)
T ss_dssp TSCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH---SSTTCCHHH
T ss_pred hccHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhHHHHHh---hcCCCCchh
Confidence 3345555555542 347899999999998876 888888863
No 4
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.45 E-value=4e+02 Score=24.11 Aligned_cols=64 Identities=6% Similarity=0.100 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 005396 529 MLKFINSLLHYLTFEVLEPNWHVMHNRLQ-TAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLC 598 (698)
Q Consensus 529 m~~Fv~~l~~Y~~~~VIe~~w~~~~~~l~-~a~~~d~l~~~H~~fL~~i~~~c~L~~~~l~~~l~~il~~c 598 (698)
+-.+.+.+..|+...+-+. ....+ ...=+++|+..|+.| +.+...||-.++.+.+++.+-+.-+
T Consensus 279 ~~~l~~~f~~~i~~~G~~~-----v~~~~~~~~~V~~ll~l~~k~-~~li~~~F~~d~~f~~~l~~af~~~ 343 (347)
T d2hyec2 279 QQALLQHWSEYIKTFGTAI-----VINPEKDKDMVQDLLDFKDKV-DHVIEVCFQKNERFVNLMKESFETF 343 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HSCGGGTTTHHHHHHHHHHHH-HHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HhCcccchHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3345566666665554211 11111 122378899999975 5667789999999888888876543
No 5
>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=12.33 E-value=1.1e+02 Score=23.63 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=27.8
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhhceec
Q 005396 215 AGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (698)
Q Consensus 215 ~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~ 249 (698)
.|.+..+..+...+........+.|+.|+-.|.+.
T Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~il~~g~~~G~~r 69 (126)
T d1pb6a2 35 AGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLA 69 (126)
T ss_dssp TTCTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 55566667777777778888889999999999874
No 6
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.80 E-value=3e+02 Score=25.64 Aligned_cols=74 Identities=9% Similarity=0.070 Sum_probs=47.0
Q ss_pred hHHhHHHHHHH----HHHHHHHHHHHHHHHhccccHHHHHHHhccC------CCHHHHHHHHHHHHHHHHHHhcCCChHH
Q 005396 518 AISRSSLLCRS----MLKFINSLLHYLTFEVLEPNWHVMHNRLQTA------KSIDEVIQHHDFFLDKCLRECLLHLPDL 587 (698)
Q Consensus 518 ~~~~~~~lr~~----m~~Fv~~l~~Y~~~~VIe~~w~~~~~~l~~a------~~~d~l~~~H~~fL~~i~~~c~L~~~~l 587 (698)
.+.+.+.|..+ +-.+.+.+..|+...+.+ ..+...+. .=+++|+..|+. .+.+...||-.++.+
T Consensus 302 ~L~~lY~L~~rv~~~~~~l~~~~~~~I~~~G~~-----~i~~~~~~~~~~~~~~V~~ll~l~~~-~~~ii~~~F~~d~~f 375 (394)
T d1ldja2 302 DLGRMYNLVSRIQDGLGELKKLLETHIHNQGLA-----AIEKCGEAALNDPKMYVQTVLDVHKK-YNALVMSAFNNDAGF 375 (394)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-----HHHHHTTSGGGCHHHHHHHHHHHHHH-HHHHHHTTTTTCHHH
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-----HHHhhhhcccCChHHHHHHHHHHHHH-HHHHHHHHcCCCHHH
Confidence 35555554433 355667777776665422 22222211 126889999986 567788999999998
Q ss_pred HHHHHHHHHH
Q 005396 588 LKKVERLKSL 597 (698)
Q Consensus 588 ~~~l~~il~~ 597 (698)
.+++.+-+.-
T Consensus 376 ~~~l~~af~~ 385 (394)
T d1ldja2 376 VAALDKACGR 385 (394)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887554
No 7
>d2i10a2 a.121.1.1 (A:79-194) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=9.75 E-value=99 Score=23.45 Aligned_cols=62 Identities=10% Similarity=0.100 Sum_probs=44.6
Q ss_pred HHHHHHHhc-cCCCcchhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhceecC
Q 005396 186 VSAVIHKAS-ANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 250 (698)
Q Consensus 186 L~~i~~~~~-~~~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~D 250 (698)
|...++... ++..+||-+.+...+. ...|+.+++.+...+.....-+...|.+-...|++.+
T Consensus 11 l~~~i~~~~~~~~p~GCl~~~~~~E~---~~~d~~i~~~l~~~~~~~~~~l~~~l~~a~~~Gel~~ 73 (116)
T d2i10a2 11 LTGRVEVFTAPGQPFGCMTVQAGLAS---GEPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLPA 73 (116)
T ss_dssp HHHHHHHHC------CCCCSSCBTTT---BCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCT
T ss_pred HHHHHHHHcCCCCCCCCHHHHhHhhc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 344443332 3456788888776653 3578999999999999999999999999999999864
No 8
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=9.73 E-value=3e+02 Score=19.80 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=31.0
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHH
Q 005396 556 LQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYA 602 (698)
Q Consensus 556 l~~a~~~d~l~~~H~~fL~~i~~~c~L~-~~~l~~~l~~il~~c~~F~ 602 (698)
|++--+.+|++..|.+++..+ .++ .+.+...++=++.+..-|.
T Consensus 38 iek~IsPEeIV~iHk~~l~el----~~~~~e~v~~Sfd~LlEVm~gyG 81 (84)
T d1w53a_ 38 IEHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGYG 81 (84)
T ss_dssp HHTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHHHHHcC
Confidence 455678999999999888764 444 4667777777777665553
No 9
>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.28 E-value=3.2e+02 Score=20.64 Aligned_cols=49 Identities=10% Similarity=0.157 Sum_probs=36.7
Q ss_pred CcchhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhceec
Q 005396 198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (698)
Q Consensus 198 ~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~ 249 (698)
..|+.++-.+...+ ..+|.....+..++...-.-+-.++++.+-.|++.
T Consensus 24 p~~~~~~~~l~ae~---~~~p~l~~~~~~~~~~r~~~~~~il~rA~~RGEl~ 72 (123)
T d2id3a2 24 PRQGRLFRALIAAS---LCNEQAAEALHRFYAVRVDEWAGCVRDAVARGEVP 72 (123)
T ss_dssp HHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred cchHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44566655554432 45777888888888888888889999999999984
No 10
>d2g7sa2 a.121.1.1 (A:77-192) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=5.05 E-value=5.5e+02 Score=18.45 Aligned_cols=50 Identities=16% Similarity=0.018 Sum_probs=35.8
Q ss_pred CCcchhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhceec
Q 005396 197 NFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (698)
Q Consensus 197 ~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~ 249 (698)
..+||-+-+.-.+. ..-++.+++.+...+.....-+-+.+..-...|.+.
T Consensus 22 ~~~gCl~~~~a~E~---~~~~~~v~~~~~~~~~~~~~~l~~~l~~a~~~g~~~ 71 (116)
T d2g7sa2 22 THPFCVCALLASEI---PVLPETVVLEVRAHFRSLSDWLTAVLERGIAQGRLV 71 (116)
T ss_dssp SSCSCHHHHHHTTG---GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBC
T ss_pred CCCCCHHHHHHHhh---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45688777766553 356778888888877777777777777777777764
Done!