BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005397
(698 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54VZ8|EXOC8_DICDI Exocyst complex component 8 OS=Dictyostelium discoideum GN=exoc8
PE=3 SV=2
Length = 815
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/334 (19%), Positives = 148/334 (44%), Gaps = 46/334 (13%)
Query: 35 RKLCCELLDLKDAVENLCGNMHTKYLAFLRLSEEVVETEHELMELRKHISAQGILVQDLM 94
RKL C +++L +++ +L F+ S+E+ +E ++++ R IS G
Sbjct: 143 RKLGC--------IDHLKKDVYKNHLIFIGASKEIANSEVDMLDFRNLISDYG------- 187
Query: 95 TGVCRQLEELSVA--------NGNID-ESLS-DPQKIELEDPLPNEIDKCKMIFLEKIDV 144
V L+ +S++ +G ID E LS + I+ PNE+ + +E+ +
Sbjct: 188 -NVMSSLQNISISWDHYKVKKSGKIDFEPLSPATEPIQWLTTAPNELS----VSIEQREF 242
Query: 145 LLAEHKVEEAIEVLDAEERNFPELRSSGEASSAQASSFKSDFLKRKAMVEDQLVKITEQP 204
+A VE+ ++ ++ P++ Q K + ++ D+L+ P
Sbjct: 243 EVAVGLVEKINKIYESN----PKVEIV-----MQTHPLKDQIENKVKILTDKLMNELRSP 293
Query: 205 SIGILELKKALTDLIKLGKGPLAHQLLLKYYASRLQRSFEVYLPSSSVCPEVFPATISKL 264
+ ++K ++ L++L + A + L+ + + ++ + + S + F ++++
Sbjct: 294 LLKANQIKDTISLLVRLSQNDKAKSIFLESRSHSINQAIKKIVFSGDL--NRFIGELARV 351
Query: 265 VFSTVSLTTKDSGLIFGDNPVYSNRVVQWAEWEIEYFVRLVKENAPPSETISAMRAASIS 324
+F++++ T D F P Y N + W IE V + + + S +
Sbjct: 352 IFNSINSTCNDFTNSF---PSYMNSGL--VSWIIEELVLISDIFNRQVFILDNFYSISQA 406
Query: 325 VEASVNYCSLLESQGLKLSRLLLLLLRPYIEEVL 358
+ ++C +++ GL + LLL+P++E+++
Sbjct: 407 IRIIESHCEMMDQTGLSIGFYWNLLLQPHVEQLI 440
>sp|Q5U247|EXOC8_XENLA Exocyst complex component 8 OS=Xenopus laevis GN=exoc8 PE=2 SV=1
Length = 685
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 107/226 (47%), Gaps = 18/226 (7%)
Query: 140 EKIDVLLAEHKVEEAIEVLDAEERNFPELRSSGEAS--SAQASSFKSDFLKRKAMVEDQL 197
E +DV +A+ E A+++LD +L S E + KS +R + D L
Sbjct: 303 EDLDVCIAQRNFEGAVDLLD-------KLNSYLEDKPLTHPVKELKSKVDERVRQLTDVL 355
Query: 198 V-KITEQPSI--GILELKKALTDLIKLGKGPLAHQLLLKYYASRLQRSF-EVYLPSSSVC 253
V +++ S+ G ++A++ L++LG+ A +L LK A+ +Q + ++ + +++
Sbjct: 356 VFELSPDRSLRGGPKATRRAVSQLVRLGQSTKACELFLKNQAAAVQTAIRQLRIEGATL- 414
Query: 254 PEVFPATISKLVFSTVSLTTKDSGLIFGDNPVYSNRVVQWAEWEIEYFVRLVKENAPPSE 313
++ + + F+++ T K+ + F +N + + W+ ++ FV + S+
Sbjct: 415 --LYIHKLCNVFFTSLLETAKEFEMDFAENHGCYSAFIVWSRLALKMFVDAFSKQVFDSK 472
Query: 314 TISAMRAASISVEASVNYCSLLESQGLKLSRLLLLLLRPYIEEVLE 359
++ + V+ + +C L GL L+ +L LL I+ L+
Sbjct: 473 --ESLSTVAECVKVAKEHCKQLSEIGLDLTFILHTLLVKDIKAALQ 516
>sp|Q5ZJ43|EXOC8_CHICK Exocyst complex component 8 OS=Gallus gallus GN=EXOC8 PE=2 SV=1
Length = 708
Score = 36.6 bits (83), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 106/225 (47%), Gaps = 16/225 (7%)
Query: 140 EKIDVLLAEHKVEEAIEVLDAEERNFPELRSSGEASSAQASSFKSDFLKRKAMVEDQLV- 198
E +DV +A+ E A+++LD + + S ++ +R + D LV
Sbjct: 326 EDLDVCIAQRDFEGAVDLLDKLNEYL-----ADKPVSQPVKELRAKVDERVRQLTDVLVF 380
Query: 199 KITEQPSI--GILELKKALTDLIKLGKGPLAHQLLLKYYASRLQRSF-EVYLPSSSVCPE 255
+++ S+ G ++A++ LI+LG+ A +L LK A+ + + ++ + +++
Sbjct: 381 ELSPDRSLRGGPRATRRAVSQLIRLGQSTKACELFLKNRAAAVHTAIRQLRIEGATL--- 437
Query: 256 VFPATISKLVFSTVSLTTKDSGLIF-GDNPVYSNRVVQWAEWEIEYFVRLVKENAPPSET 314
++ + + F+++ T ++ F G+N YS VV WA + FV + S+
Sbjct: 438 LYIHKLCHVFFTSLLETAREFETDFAGNNGCYSAFVV-WARSSMRMFVDAFSKQVFDSK- 495
Query: 315 ISAMRAASISVEASVNYCSLLESQGLKLSRLLLLLLRPYIEEVLE 359
++ A+ V+ + +C L GL L+ ++ LL I+ L+
Sbjct: 496 -ESLSTAAECVKVAKEHCKQLSDIGLDLTFIIHALLVKDIKGALQ 539
>sp|Q80TH2|LAP2_MOUSE Protein LAP2 OS=Mus musculus GN=Erbb2ip PE=1 SV=3
Length = 1402
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 313 ETISAMRAASISVEASVNYCSLLESQGLKLSRLLLLLLRPYIEEVLELNFRRARKMVFNL 372
E I + +I VEASVN S L +L L L L E L NF R K+ L
Sbjct: 109 ENIKNCKVLTI-VEASVNPISKLPDGFSQLLNLTQLYLNDAFLEFLPANFGRLTKLQI-L 166
Query: 373 EDIDESLLLSPHFMSPLSLFATSSDSMLVDSGSRFMHIVEEILEQLTPLVVLHFGGNILT 432
E + L + P M+ L+ +D GS V E+LEQL+ L GN LT
Sbjct: 167 ELRENQLKMLPKTMNRLTQLER------LDLGSNEFTEVPEVLEQLSGLREFWMDGNRLT 220
Query: 433 RI 434
I
Sbjct: 221 FI 222
>sp|Q10289|FAS2_SCHPO Fatty acid synthase subunit alpha OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=fas2 PE=1 SV=2
Length = 1842
Score = 34.3 bits (77), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 433 RISQLFDKYLDALNRALPGPSDDDNLTELKETIPF 467
+I QL+ + L AL +LP PS +D T +KETIPF
Sbjct: 565 QIKQLYGQVLHAL--SLPLPSSNDEQTPVKETIPF 597
>sp|Q9PQA5|MRAZ_UREPA Protein MraZ OS=Ureaplasma parvum serovar 3 (strain ATCC 700970)
GN=mraZ PE=3 SV=1
Length = 145
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 401 VDSGSRFM---HIVEEILEQLTPLVVLHFGGNILTRISQLFDKYLDALNRALPGPSDDDN 457
+DS +R + + + E + + L F GNI R+ F+++++ +N L G + N
Sbjct: 10 IDSKNRMLVPSKVKATLGEAIFVYLSLGFDGNIDMRLESEFNQFVNNINNLLIGSKEARN 69
Query: 458 LTELKETIPFRAETDS 473
LT L + ++ E DS
Sbjct: 70 LTRLILSQTYKIEIDS 85
>sp|B1AJ24|MRAZ_UREP2 Protein MraZ OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27
/ NCTC 11736) GN=mraZ PE=3 SV=1
Length = 145
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 401 VDSGSRFM---HIVEEILEQLTPLVVLHFGGNILTRISQLFDKYLDALNRALPGPSDDDN 457
+DS +R + + + E + + L F GNI R+ F+++++ +N L G + N
Sbjct: 10 IDSKNRMLVPSKVKATLGEAIFVYLSLGFDGNIDMRLESEFNQFVNNINNLLIGSKEARN 69
Query: 458 LTELKETIPFRAETDS 473
LT L + ++ E DS
Sbjct: 70 LTRLILSQTYKIEIDS 85
>sp|P22189|ATC3_SCHPO Calcium-transporting ATPase 3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cta3 PE=1 SV=1
Length = 1037
Score = 33.5 bits (75), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 5/133 (3%)
Query: 180 SSFKSDFLKRKAMVEDQLVKITEQPSIGILELKKALTDLIK----LGKGPLAHQLLLKYY 235
SSF S L + D + ++ +GI + K + D++ LG L +++ Y
Sbjct: 806 SSFPSMGLGMELAQPDVMERLPHDNKVGIFQ-KSLIVDMMVYGFFLGVVSLMTWVVIMYG 864
Query: 236 ASRLQRSFEVYLPSSSVCPEVFPATISKLVFSTVSLTTKDSGLIFGDNPVYSNRVVQWAE 295
S++ + C +VF A + T + + DN +++ + W E
Sbjct: 865 FGTGNLSYDCNAHYHAGCNDVFKARSAVFAVVTFCILIMAVEVKNFDNSLFNLHGIPWGE 924
Query: 296 WEIEYFVRLVKEN 308
W YF+ + EN
Sbjct: 925 WNFRYFLHTLVEN 937
>sp|P53114|MED5_YEAST Mediator of RNA polymerase II transcription subunit 5
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NUT1 PE=1 SV=1
Length = 1132
Score = 33.1 bits (74), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 348 LLLRPYIEEVLELNFRRARKMVF--NLEDIDESLLLSPHFMSPLSLFATSSDSMLVD 402
L+L YI EVL +N+ F L + SLLL+ F S FA SD++++D
Sbjct: 99 LILADYIVEVLLVNYNSDMIKCFLPKLNSVRNSLLLAHFFSKSCSFFAKLSDTLIID 155
>sp|Q06091|SN309_YEAST Pre-mRNA-splicing factor SNT309 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SNT309 PE=1 SV=1
Length = 175
Score = 32.7 bits (73), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 20/95 (21%)
Query: 428 GNILTRISQLFDKYLDALN---RALPGPSDDDN---LTELKETIPFRAET------DSEQ 475
++ T + L+ +YL N R P +DDD+ L E + P R +T +S +
Sbjct: 52 NSVSTLTNALYTEYLKQRNNKKRRTPDFNDDDDTLFLEEYRRKYP-RIDTSRYIPNESSE 110
Query: 476 LSLLGVAFT-------IMDELLPNTVSKVWNPKNE 503
+SLLG+ + ++D LLP TVS W N+
Sbjct: 111 VSLLGIVDSYLKHQEIVLDTLLPQTVSNQWRINND 145
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 247,651,643
Number of Sequences: 539616
Number of extensions: 10247680
Number of successful extensions: 30574
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 30540
Number of HSP's gapped (non-prelim): 93
length of query: 698
length of database: 191,569,459
effective HSP length: 125
effective length of query: 573
effective length of database: 124,117,459
effective search space: 71119304007
effective search space used: 71119304007
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)