Query 005397
Match_columns 698
No_of_seqs 137 out of 163
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 00:12:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d2s_A Exocyst complex compone 100.0 7.3E-52 2.5E-56 423.8 20.1 219 130-356 13-233 (235)
2 2a2f_X Exocyst complex compone 86.6 35 0.0012 36.0 22.5 105 534-661 186-291 (325)
3 3fhn_A Protein transport prote 77.0 99 0.0034 36.1 19.0 64 581-658 567-632 (706)
4 3okq_A BUD site selection prot 76.6 20 0.00068 33.6 10.6 67 18-85 8-79 (141)
5 3swh_A MUNC13-1, protein UNC-1 71.5 1.1E+02 0.0037 32.5 17.9 158 347-541 8-171 (341)
6 2pft_A Exocytosis protein; hel 61.0 2.1E+02 0.0073 32.0 22.3 38 210-247 116-153 (571)
7 1deb_A APC protein, adenomatou 34.4 1.5E+02 0.005 23.0 6.8 43 35-84 6-48 (54)
8 1g6u_A Domain swapped dimer; d 31.5 1.2E+02 0.004 22.4 5.7 29 66-94 19-47 (48)
9 1ci6_A Transcription factor AT 30.2 1.4E+02 0.0048 23.8 6.6 39 33-85 24-62 (63)
10 2v71_A Nuclear distribution pr 25.2 4.2E+02 0.014 25.8 10.2 64 32-95 49-116 (189)
11 1uo4_A General control protein 25.2 40 0.0014 24.1 2.1 19 68-86 16-34 (34)
12 3m48_A General control protein 24.8 41 0.0014 23.9 2.1 20 67-86 14-33 (33)
13 2kjg_A Archaeal protein SSO690 23.1 1.8E+02 0.0061 25.2 6.2 50 29-78 19-71 (99)
14 3kpe_A Fusion glycoprotein F0; 22.0 76 0.0026 24.7 3.4 27 71-97 1-27 (51)
15 2wq1_A General control protein 21.8 68 0.0023 22.7 2.8 19 67-85 14-32 (33)
16 4afl_A P29ING4, inhibitor of g 21.1 3.9E+02 0.013 22.8 9.8 46 20-65 4-51 (104)
17 2nps_B Syntaxin 13, vesicle-as 21.1 1.7E+02 0.0058 23.6 5.6 33 65-97 4-36 (71)
18 2hr2_A Hypothetical protein; a 20.9 1.6E+02 0.0056 27.6 6.3 60 131-194 98-157 (159)
19 3n1e_A Vacuolar protein sortin 20.2 3E+02 0.01 25.6 7.7 78 572-658 42-122 (141)
No 1
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=100.00 E-value=7.3e-52 Score=423.84 Aligned_cols=219 Identities=20% Similarity=0.215 Sum_probs=196.8
Q ss_pred ChhhHHHHhhhhHHHHHhhccHHHHHHHHHHHHhhccccccCC-CCChHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCh
Q 005397 130 EIDKCKMIFLEKIDVLLAEHKVEEAIEVLDAEERNFPELRSSG-EASSAQASSFKSDFLKRKAMVEDQLVKITEQPSIGI 208 (698)
Q Consensus 130 ~~~~Wl~e~~deLDVlIAeR~feeAv~llek~~~~l~~~~~~~-~~~~~~~~~lk~~i~eR~~~La~~L~~~~~~~s~~~ 208 (698)
+..+|+.++||||||+||+|+||+||++|+++++.++++++.+ +..+.....++.+|++|+++|+++|++++.+ +.++
T Consensus 13 ~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~~~ 91 (235)
T 2d2s_A 13 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SNEI 91 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSH
T ss_pred hhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCH
Confidence 4679999999999999999999999999999999998876432 1334556778899999999999999999966 8889
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhhhhcccCCCCCCccccchhhHHHhhhHHHHHHHHHhhhCC-CCCch
Q 005397 209 LELKKALTDLIKLGKGPLAHQLLLKYYASRLQRSFEVYLPSSSVCPEVFPATISKLVFSTVSLTTKDSGLIFGD-NPVYS 287 (698)
Q Consensus 209 ~~~rravs~L~RLG~~~~A~~lfL~~rs~~I~~~~R~lr~eg~~~g~~YI~~LS~v~Ft~I~~ta~ef~~~F~~-~~~~~ 287 (698)
.++|++|+||+|||++++||++||++||.+|++++|++..+ ++++.||++||++||++|++|+++|.++||+ +|+|+
T Consensus 92 ~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~--gd~~~Yi~~Ls~i~Fs~I~~t~~~f~~~F~~~~~~~~ 169 (235)
T 2d2s_A 92 VHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSV--DNPTNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKIS 169 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--C--CSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 99999999999999999999999999999999999999544 5789999999999999999999999999998 78999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCcchhhhHHHHHHHHHHHHHHhhHHhcCCCcHHHHHHhhhHhHHH
Q 005397 288 NRVVQWAEWEIEYFVRLVKENAPPSETISAMRAASISVEASVNYCSLLESQGLKLSRLLLLLLRPYIEE 356 (698)
Q Consensus 288 S~~V~WA~~Ele~Fa~l~~Rqv~ss~~~~~l~~~aeCv~ia~~hc~~L~e~GLdl~flL~~lLrp~ve~ 356 (698)
|+||+||++|++.|+.+|+|||++ ++++ +++||+++++||++|+++||||+|+|+++|+|++++
T Consensus 170 S~lV~Wa~~eve~f~~l~~rqv~~---~~~l--~~ecv~i~~~~~~~L~~vGLd~~~~L~~ll~~~~~~ 233 (235)
T 2d2s_A 170 SILVDWCSDEVDNHFKLIDKQLLN---DEML--SPGSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSDK 233 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC------C--CHHHHHHHHHHHHGGGGGTCCCHHHHHHHHHTTGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHccC---CccH--HHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhhHhh
Confidence 999999999999999999999977 3567 449999999999999999999999999999999986
No 2
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=86.59 E-value=35 Score=36.00 Aligned_cols=105 Identities=12% Similarity=0.055 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHhhccccCcccccccccccCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 005397 534 DKLRDHFCRQYVLSFIYSREGKTRLNGQIYLSGNEEYTQWDSDPLPSLPFQALFAKLQQLATVAGDVLLGKEKLQKILLA 613 (698)
Q Consensus 534 ~~lr~~fc~q~~~~~i~~~~~~~~l~~~~y~~~~~~~~~~~~~~~Ps~~Fq~lf~~l~~la~~~~d~~~g~e~~~~~ll~ 613 (698)
++-=..-++++|-+|+=+ .+ | |=.+.+|. .=||.--+.|-.-|+.+=+ +--+|-+. +...+..
T Consensus 186 e~~I~~~v~~KIDdfl~l-a~--------y-DW~~~~~~----~~ps~yi~dli~fL~~~f~-sl~~LP~~--v~~~~~~ 248 (325)
T 2a2f_X 186 EKQVGLRICSKIDEFFEL-SA--------Y-DWLLVEPP----GIASAFITDMISYLKSTFD-SFAFKLPH--IAQAACR 248 (325)
T ss_dssp HHHHHHHHHHHHHHHHTT-CC--------T-TCC----C----CSCCHHHHHHHHHHHHHHH-TTTTTSHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-cc--------c-CCCCCCCC----CCccHHHHHHHHHHHHHHH-HHHcCCHH--HHHHHHH
Confidence 333345567888888822 21 1 11111121 2389988888888888766 33333332 2333333
Q ss_pred HHHHHHHHHhcCcchhhHhhh-cCCCCCCccchhhhhhHHHHHHHHHHh
Q 005397 614 RLTETVVMWLSAEQEFWAVFE-DESSPIQPLGLQQLILDMHFTVEIARF 661 (698)
Q Consensus 614 rl~etvv~~ls~~~~fw~~~e-~~~~~~~~~glqq~~Ldm~f~~~~a~~ 661 (698)
+- ...||+ .+|+..- ++.+.+-+.|++||-+|++|+-.||..
T Consensus 249 ~a----~~his~--~l~~~Ll~~~vk~in~~av~~~~~Dv~~lE~fa~~ 291 (325)
T 2a2f_X 249 RT----FEHIAE--KIYSIMYDEDVKQISTGALTQINLDLMQCEFFAAS 291 (325)
T ss_dssp HH----HHHHHH--HHHHHHTC------CCTTHHHHHHHHHHHHHHHTT
T ss_pred HH----HHHHHH--HHHHHhcCcchhhcCHHHHHHHHHHHHHHHHHHHh
Confidence 32 334555 5666543 455888999999999999999999965
No 3
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=76.97 E-value=99 Score=36.05 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHH--hhhhhcchhHHHHHHHHHHHHHHHHHhcCcchhhHhhhcCCCCCCccchhhhhhHHHHHHHH
Q 005397 581 LPFQALFAKLQQLATV--AGDVLLGKEKLQKILLARLTETVVMWLSAEQEFWAVFEDESSPIQPLGLQQLILDMHFTVEI 658 (698)
Q Consensus 581 ~~Fq~lf~~l~~la~~--~~d~~~g~e~~~~~ll~rl~etvv~~ls~~~~fw~~~e~~~~~~~~~glqq~~Ldm~f~~~~ 658 (698)
++++.|=..|..|.+. .... ...+-+++.+.+..|| |+.+=. ...|...|+.||-.||..+..+
T Consensus 567 ~~L~~L~~~L~~L~~~lL~~~~-------f~~IwR~ia~~Ld~yL------~e~IL~-~nkFS~~Ga~Qf~~D~~~L~~v 632 (706)
T 3fhn_A 567 NSINVLRRLINKLDSMDIPLAI-------SLKVKNELLNVIVNYF------TESILK-LNKFNQNGLNQFLHDFKSLSSI 632 (706)
T ss_dssp HHHHHHHHHHHHHHTSCCCHHH-------HHHHHHHHHHHHHHHH------HHTTTT-TSCBCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHccCCHHH-------HHHHHHHHHHHHHHHH------HHHHHh-cCccCHHHHHHHHHHHHHHHHH
Confidence 3666666666666554 2233 3335556666655544 443323 4678899999999999996654
No 4
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=76.56 E-value=20 Score=33.57 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=53.1
Q ss_pred hhhhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005397 18 PQSKIDSVYQSHTEKGIRKLCCELLDLKDAVENLCGNMHTK-----YLAFLRLSEEVVETEHELMELRKHISA 85 (698)
Q Consensus 18 p~~Yv~~~~~~~~ek~lr~~~~~L~~lk~t~e~LkknVy~N-----Y~~FI~tSKEIs~LE~Em~qL~~lLse 85 (698)
...|+..- +..=+.+.+.+-+++-+|.+.+++||+.|... =.+.=.++|||..+..++-.|..+++.
T Consensus 8 ~R~y~~~~-k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ 79 (141)
T 3okq_A 8 NRMYMEKS-QTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDT 79 (141)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHh-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666543 12225677888899999999999999999875 357778999999999999999988876
No 5
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=71.55 E-value=1.1e+02 Score=32.47 Aligned_cols=158 Identities=13% Similarity=0.191 Sum_probs=104.6
Q ss_pred HHhhhHhHHHHHHHHHHHHHHHHhhhhhcCCccccCCCCCCCCcccCCCCceecchhHHHHHHHHHHHHhhcccccccch
Q 005397 347 LLLLRPYIEEVLELNFRRARKMVFNLEDIDESLLLSPHFMSPLSLFATSSDSMLVDSGSRFMHIVEEILEQLTPLVVLHF 426 (698)
Q Consensus 347 ~~lLrp~ve~aL~~~~~ri~e~i~~~~~~D~W~~~~~~~~~~~s~~~~~~~~~LT~S~~~F~~~vq~fled~~~L~~~~L 426 (698)
+..|.|.|.+=|....++..+-|...+..|+|.|..+.+ ...+=|+|++-..+++.++++-...|.=|+-
T Consensus 8 ~~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~----------~~~~hSsSvvDif~~~~Q~~~~~~~L~WpD~ 77 (341)
T 3swh_A 8 PAWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTS----------EHALFSCSVVDVFSQLNQSFEIIKKLECPDP 77 (341)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSS----------SSCCSCTHHHHHHHHHHHHHHHHHHSCCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccc----------cCccccchHHHHHHHHHHHHHHHHHCCCCCH
Confidence 467899999999999999999999999999999885311 2357789999999999999999999988774
Q ss_pred ------hhhHHHHHHHHHHHHHHHHHHhCCCCCCCccccccccCcccccCChHHHhHHHHHHHHHHhhhhhhhhhhhcCC
Q 005397 427 ------GGNILTRISQLFDKYLDALNRALPGPSDDDNLTELKETIPFRAETDSEQLSLLGVAFTIMDELLPNTVSKVWNP 500 (698)
Q Consensus 427 ------~~~il~~l~~lF~~yv~~L~~al~~~~~~~~~~e~~~~~~~~a~t~~qq~ail~Na~~l~d~Llp~~~~k~~~~ 500 (698)
.-.+.+.+++.-..|.+.+.+-++....+++ +..-++ ++.|...+...| ....... .
T Consensus 78 ~~~~~f~t~l~~~i~~~~~~Y~~~l~~~~~~~~~~e~-------------~~~~Cv-~lNNie~lR~~L-~~l~~~l-~- 140 (341)
T 3swh_A 78 QIVGHYMRRFAKTISNVLLQYADIVSKDFASYCSKEK-------------EKVPCI-LMNNTQQLRVQL-EKMFEAM-G- 140 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTS-------------CHHHHH-HHHHHHHHHHHH-HHHHHHT-T-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-------------ccchhh-hcccHHHHHHHH-HHHHHhc-c-
Confidence 3346777888888899998777654321221 011111 668888876444 2121111 0
Q ss_pred CCCCcccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 005397 501 KNESKEVGNENIAPNASTTTELKDWKRHLQHSFDKLRDHFC 541 (698)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~e~~e~~~~lq~~~~~lr~~fc 541 (698)
.+.+.. .....++++.+.|....+.|-+.|-
T Consensus 141 --------~~~l~~--~~~~~~~~lq~~l~~vl~~l~~~~~ 171 (341)
T 3swh_A 141 --------GKELDA--EASGTLKELQVKLNNVLDELSHVFA 171 (341)
T ss_dssp --------TTTSCH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111211 1112556677777777776655443
No 6
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=60.96 E-value=2.1e+02 Score=32.04 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhhhhcc
Q 005397 210 ELKKALTDLIKLGKGPLAHQLLLKYYASRLQRSFEVYL 247 (698)
Q Consensus 210 ~~rravs~L~RLG~~~~A~~lfL~~rs~~I~~~~R~lr 247 (698)
.++..+.+|+.-|......+.|-+.|+..|...++.|.
T Consensus 116 ~L~~Ia~~m~~~g~~~~~~~~Y~~~R~~~l~~sL~~L~ 153 (571)
T 2pft_A 116 DVVRISRWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLK 153 (571)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999998883
No 7
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=34.37 E-value=1.5e+02 Score=23.05 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005397 35 RKLCCELLDLKDAVENLCGNMHTKYLAFLRLSEEVVETEHELMELRKHIS 84 (698)
Q Consensus 35 r~~~~~L~~lk~t~e~LkknVy~NY~~FI~tSKEIs~LE~Em~qL~~lLs 84 (698)
.++-.....||.-+..||+..-.| |--+|.||+|-..++..|-
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dN-------S~~lskLE~ets~mKevlk 48 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDN-------SNHLTKLETEASNMKEVLK 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhh-------HHHHHHHHhhhhhHHHHHH
Confidence 456677888897788899988888 5668899999888887664
No 8
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=31.54 E-value=1.2e+02 Score=22.43 Aligned_cols=29 Identities=34% Similarity=0.379 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005397 66 SEEVVETEHELMELRKHISAQGILVQDLM 94 (698)
Q Consensus 66 SKEIs~LE~Em~qL~~lLseQ~~lv~~L~ 94 (698)
-+|...||+|+..|.+-|..-++-++.|.
T Consensus 19 peelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 19 PEELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36888899999999999988888887763
No 9
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.20 E-value=1.4e+02 Score=23.77 Aligned_cols=39 Identities=23% Similarity=0.190 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005397 33 GIRKLCCELLDLKDAVENLCGNMHTKYLAFLRLSEEVVETEHELMELRKHISA 85 (698)
Q Consensus 33 ~lr~~~~~L~~lk~t~e~LkknVy~NY~~FI~tSKEIs~LE~Em~qL~~lLse 85 (698)
.+..+..+..+|+.-+.+|+ .+|+.|+.|+..|+++|.+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~--------------~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALK--------------ERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhh
Confidence 34445555555555555555 4667799999999998865
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=25.25 E-value=4.2e+02 Score=25.81 Aligned_cols=64 Identities=14% Similarity=0.021 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005397 32 KGIRKLCCELLDLKDAVENLCGNMHTKYLAFLRLSEE----VVETEHELMELRKHISAQGILVQDLMT 95 (698)
Q Consensus 32 k~lr~~~~~L~~lk~t~e~LkknVy~NY~~FI~tSKE----Is~LE~Em~qL~~lLseQ~~lv~~L~~ 95 (698)
++|.+.-+.+.+|+.....|+..+-..=.-+-....| |+.|+.|+.+|+.-....+.-+..|-.
T Consensus 49 ~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 49 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666655555555555544455555555 999999999999888888777777764
No 11
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=25.19 E-value=40 Score=24.08 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005397 68 EVVETEHELMELRKHISAQ 86 (698)
Q Consensus 68 EIs~LE~Em~qL~~lLseQ 86 (698)
|=++||+|+..|+.+|.+|
T Consensus 16 ~n~~Le~EV~RLk~LL~~~ 34 (34)
T 1uo4_A 16 KLYHIENELARIKKLLGER 34 (34)
T ss_dssp HHHHHHHHHHHHHHHTTC-
T ss_pred hhHHHHHHHHHHHHHHccC
Confidence 3467999999999999764
No 12
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=24.85 E-value=41 Score=23.89 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005397 67 EEVVETEHELMELRKHISAQ 86 (698)
Q Consensus 67 KEIs~LE~Em~qL~~lLseQ 86 (698)
.|-++||+|+..|+.+|.+|
T Consensus 14 ~~n~~Le~EV~RLk~Ll~~~ 33 (33)
T 3m48_A 14 SKNWNLENEVARLKKLVGER 33 (33)
T ss_dssp HHHHHHHHHHHHHHHHTTC-
T ss_pred HHhHHHHHHHHHHHHHhhcC
Confidence 35577999999999999764
No 13
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=23.07 E-value=1.8e+02 Score=25.16 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHH
Q 005397 29 HTEKGIRKLCCELLDLKDAVENLCG---NMHTKYLAFLRLSEEVVETEHELME 78 (698)
Q Consensus 29 ~~ek~lr~~~~~L~~lk~t~e~Lkk---nVy~NY~~FI~tSKEIs~LE~Em~q 78 (698)
.+-+++++.-++|..--.-..++|- -||+||.+|++-.||-=+|=+.+.|
T Consensus 19 vd~~~v~~IL~eiE~~~rksnni~tS~If~Yanh~~~V~knk~fy~li~~Ile 71 (99)
T 2kjg_A 19 VNFNLVMQILDEIELDLRGSDNIKTSIIYVYSSHLDEIRKNKEFYDMIAEILQ 71 (99)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHTHHHHHHTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5567777776666432211122222 4899999999999998887666544
No 14
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=21.97 E-value=76 Score=24.71 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005397 71 ETEHELMELRKHISAQGILVQDLMTGV 97 (698)
Q Consensus 71 ~LE~Em~qL~~lLseQ~~lv~~L~~~~ 97 (698)
+||+++..|++-+.+.-.-|.+|..|+
T Consensus 1 ~le~~I~~Lk~ai~~TNeAV~~L~~g~ 27 (51)
T 3kpe_A 1 HLEGEVNKIKSALLSTNKAVVSLSNGV 27 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999988
No 15
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=21.80 E-value=68 Score=22.71 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005397 67 EEVVETEHELMELRKHISA 85 (698)
Q Consensus 67 KEIs~LE~Em~qL~~lLse 85 (698)
.++++||+|+..|+.+|.+
T Consensus 14 ~~~~~le~EV~Rl~~ll~~ 32 (33)
T 2wq1_A 14 SKIYHNTNEIARNTKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HhhHHHHHHHHHHHHHhcC
Confidence 4678899999999999854
No 16
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=21.13 E-value=3.9e+02 Score=22.84 Aligned_cols=46 Identities=11% Similarity=0.121 Sum_probs=36.3
Q ss_pred hhHHHhhccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 005397 20 SKIDSVYQSHT--EKGIRKLCCELLDLKDAVENLCGNMHTKYLAFLRL 65 (698)
Q Consensus 20 ~Yv~~~~~~~~--ek~lr~~~~~L~~lk~t~e~LkknVy~NY~~FI~t 65 (698)
-|+.+.+.... +.+++++-+.+.++-....++++.+-+.+..||..
T Consensus 4 ~yledyld~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~ 51 (104)
T 4afl_A 4 MYLEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSS 51 (104)
T ss_dssp HHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666634 79999999999999966666777789999999974
No 17
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=21.12 E-value=1.7e+02 Score=23.59 Aligned_cols=33 Identities=6% Similarity=0.231 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005397 65 LSEEVVETEHELMELRKHISAQGILVQDLMTGV 97 (698)
Q Consensus 65 tSKEIs~LE~Em~qL~~lLseQ~~lv~~L~~~~ 97 (698)
-.+||..+|..|.+|..+..+-..+|+.-.+..
T Consensus 4 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~i 36 (71)
T 2nps_B 4 RETAIQQLEADILDVNQIFKDLAMMIHDQGDLI 36 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 357899999999999988888777777665444
No 18
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=20.93 E-value=1.6e+02 Score=27.56 Aligned_cols=60 Identities=12% Similarity=-0.009 Sum_probs=42.8
Q ss_pred hhhHHHHhhhhHHHHHhhccHHHHHHHHHHHHhhccccccCCCCChHHHHhHHHHHHHHHHHHH
Q 005397 131 IDKCKMIFLEKIDVLLAEHKVEEAIEVLDAEERNFPELRSSGEASSAQASSFKSDFLKRKAMVE 194 (698)
Q Consensus 131 ~~~Wl~e~~deLDVlIAeR~feeAv~llek~~~~l~~~~~~~~~~~~~~~~lk~~i~eR~~~La 194 (698)
...|+.-+-.-=..+...+++|+|+.-++++-+...+- .+ .-..+...+.++.+|+.+|-
T Consensus 98 ~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d--~~--~~~~~~~~~~~~~~~~~k~~ 157 (159)
T 2hr2_A 98 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER--KG--ETPGKERMMEVAIDRIAQLG 157 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC--CS--CCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc--HH--HHHHHHHHHHHHHHHHHHhc
Confidence 45674444444467788999999999999998776542 11 12246788888999999884
No 19
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=20.17 E-value=3e+02 Score=25.56 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=51.7
Q ss_pred CCCC-CCCCCHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCcchhhHhhhcCCCCCCccchhh--h
Q 005397 572 QWDS-DPLPSLPFQALFAKLQQLATVAGDVLLGKEKLQKILLARLTETVVMWLSAEQEFWAVFEDESSPIQPLGLQQ--L 648 (698)
Q Consensus 572 ~~~~-~~~Ps~~Fq~lf~~l~~la~~~~d~~~g~e~~~~~ll~rl~etvv~~ls~~~~fw~~~e~~~~~~~~~glqq--~ 648 (698)
.|+. .|.||+.|+.|.-.+.+|..+...+|--.. ++.++.+.-..+-. =|...=.+-..--..|.|+ .
T Consensus 42 ~Wd~k~pvpS~~m~tl~Ke~~kLH~~Ls~~LP~~~--v~~Im~~Vf~~fk~-------~l~~~~~~~~i~~~~G~q~g~v 112 (141)
T 3n1e_A 42 KYEVKAPVPSPCFRNICKQMTKMHEAIFDLLPEEQ--TQMLFLRINASYKL-------HLKKQLSHLNVINDGGPQNGLV 112 (141)
T ss_dssp TCCCCSSSSCHHHHHHHHHHHHHHHHHTTTSCHHH--HHHHHHHHHHHHHH-------HHHHHHHHTTCCSSSSHHHHHH
T ss_pred HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCHHH--HHHHHHHHHHHHHH-------HHHHHHHHcCCCCCCcccchHH
Confidence 3542 578999999999999999999999976543 67777777555433 2222112222223567776 6
Q ss_pred hhHHHHHHHH
Q 005397 649 ILDMHFTVEI 658 (698)
Q Consensus 649 ~Ldm~f~~~~ 658 (698)
.=|+.|...=
T Consensus 113 ~~Dv~ff~~~ 122 (141)
T 3n1e_A 113 TADVAFYTGN 122 (141)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6788776653
Done!