RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 005399
(698 letters)
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
[TaxId: 562]}
Length = 444
Score = 181 bits (460), Expect = 5e-51
Identities = 95/460 (20%), Positives = 179/460 (38%), Gaps = 59/460 (12%)
Query: 91 VIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPAC 150
++ + +VG L G+ V F+KGV +++ + + ++ P + L A
Sbjct: 19 ILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNY------PLLLTVAFLCSAV 72
Query: 151 GGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTI 210
L + +YA P+A +
Sbjct: 73 LAMFGYFLVR-KYA-----------------------PEAGGSGIPEIEGALEDQRPVRW 108
Query: 211 YYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNLFDRRPRRKVSLV 270
+ +K TLG G LG EGP+V+IG +I + V ++F + +
Sbjct: 109 WR-------VLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTL 161
Query: 271 -AAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEV 329
A G+AAG+++ FNA +AG F +E + + V + ++++++ +
Sbjct: 162 LATGAAAGLAAAFNAPLAGILFIIEEMRP------QFRYTLISIKAVFIGVIMSTIMYRI 215
Query: 330 GLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPK 389
V + L LYL+LG++ G+ ++ M ++ + N
Sbjct: 216 FNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKW 275
Query: 390 AVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSL 449
+ G GL+ + P GF + I + ML+ + A+++ T L
Sbjct: 276 VLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNF-----SMGMLVFIFVARVITTLL 330
Query: 450 CRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAA 509
C +SG GG +AP L +G G A+G Q + + + GM A
Sbjct: 331 CFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHL----------EAGTFAIAGMGA 380
Query: 510 TLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFT 549
LA + PLT ++L+ E+T +Y+++LP++ ++
Sbjct: 381 LLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 420
>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit
gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 159
Score = 47.1 bits (111), Expect = 8e-07
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDN-ILIGLLTLGDIEEF 679
+ V + L +A++ ++ K ++D ++ + +LT I +F
Sbjct: 97 VYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKF 152
Score = 31.7 bits (71), Expect = 0.16
Identities = 8/58 (13%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 622 RRVFVSEVM--RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDN-ILIGLLTLGDI 676
+ +++ ++ V + + +A ++ A + D+ +G+LT+ D
Sbjct: 11 KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 68
>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase
subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 145
Score = 45.2 bits (106), Expect = 3e-06
Identities = 12/127 (9%), Positives = 37/127 (29%), Gaps = 4/127 (3%)
Query: 553 MRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSLCIDD 612
++ V T I+ + +V +
Sbjct: 17 GTYANI----AMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKT 72
Query: 613 WNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLT 672
+N + + + + + L + ++ + ++VD +++ G+++
Sbjct: 73 YNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVS 132
Query: 673 LGDIEEF 679
L DI +
Sbjct: 133 LSDILQA 139
>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate
dehydrogenase CBS domains {Chinese hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 120
Score = 42.0 bits (98), Expect = 2e-05
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 613 WNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLT 672
L+ EE R + R V L EA ++ K+ IV+ ++ L+ ++
Sbjct: 52 DFLKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIA 111
Query: 673 LGDIE 677
D++
Sbjct: 112 RTDLK 116
>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga
maritima [TaxId: 2336]}
Length = 145
Score = 42.7 bits (99), Expect = 2e-05
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
SE+M V V M T L EAL LM+ +VD ++G L +I
Sbjct: 86 ASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEI 135
Score = 34.2 bits (77), Expect = 0.019
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGD 675
V +++ + V T + E + +L + + + V DN L+G++ +
Sbjct: 6 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMH 55
>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 43.0 bits (100), Expect = 3e-05
Identities = 8/80 (10%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 600 NLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAM 659
+ + + + ++ TV T + + + +
Sbjct: 76 GVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIF-RKLGLRQC 134
Query: 660 IVDNDNILIGLLTLGDIEEF 679
+V ++ L+G++T D+ +
Sbjct: 135 LVTHNGRLLGIITKKDVLKH 154
>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 40.9 bits (95), Expect = 8e-05
Identities = 13/81 (16%), Positives = 27/81 (33%)
Query: 599 INLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCA 658
+V + +N + + T L + + +
Sbjct: 56 YEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRF 115
Query: 659 MIVDNDNILIGLLTLGDIEEF 679
+VD+ L+G+LTL DI ++
Sbjct: 116 FVVDDVGRLVGVLTLSDILKY 136
Score = 37.1 bits (85), Expect = 0.002
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 620 LKRRVF-VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
LK + ++ + + + MTT +I+ + ++ + S I+D + LI + D+
Sbjct: 4 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDV 61
>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE
{Enterococcus faecalis [TaxId: 1351]}
Length = 127
Score = 40.2 bits (93), Expect = 1e-04
Identities = 9/54 (16%), Positives = 25/54 (46%)
Query: 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
+++++ R ++V + + + + D D+ L+G++T+ DI
Sbjct: 64 DTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDI 117
Score = 29.0 bits (64), Expect = 0.96
Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 629 VMRTRYVTVLMTTLLIEALTLM-----LAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA 683
+M T +V+++ + A+ ++ +AE +VD +N L+G+++L D+
Sbjct: 6 IMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVNDDDT 65
Query: 684 QAKTSRSKNVEW 695
++ V
Sbjct: 66 LIADILNERVIS 77
>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 156
Score = 40.0 bits (92), Expect = 2e-04
Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 2/124 (1%)
Query: 553 MRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSLCIDD 612
+ + + V + T R ++ E A + E
Sbjct: 30 LLLSNSMA--LPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTL 87
Query: 613 WNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLT 672
+ E V+E+M + + E M ++ + LIGL+
Sbjct: 88 LFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIR 147
Query: 673 LGDI 676
D+
Sbjct: 148 DFDL 151
Score = 36.1 bits (82), Expect = 0.004
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDN 665
+ V + + V T L AL +L +VD++
Sbjct: 2 KGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEG 45
>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 179
Score = 40.4 bits (93), Expect = 2e-04
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 609 CIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND---- 664
+ + L+ + + V L++A M + ++D D
Sbjct: 92 IAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETG 151
Query: 665 -NILIGLLTLGDIEEF 679
+++ +LT I +F
Sbjct: 152 SEMIVSVLTQYRILKF 167
>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio
cholerae [TaxId: 666]}
Length = 139
Score = 39.5 bits (91), Expect = 2e-04
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
V ++M T+L T L +A LM A IVD + L+G+++ D+
Sbjct: 4 VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDL 54
Score = 33.7 bits (76), Expect = 0.023
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 612 DWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLL 671
+ + + L + EVM T +V L E+ M K C +V D L+G++
Sbjct: 63 QRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDV-LVGII 121
Query: 672 TLGDI 676
T D
Sbjct: 122 TDSDF 126
>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 122
Score = 39.1 bits (90), Expect = 2e-04
Identities = 17/88 (19%), Positives = 35/88 (39%)
Query: 589 DLLAEEEPYAINLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALT 648
+L + + + + E L + ++ +++ V L +A
Sbjct: 25 ELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQLAMLVKRDVPVVKENDTLKKAAK 84
Query: 649 LMLAEKQSCAMIVDNDNILIGLLTLGDI 676
LML ++VD+ +G+LT+GDI
Sbjct: 85 LMLEYDYRRVVVVDSKGKPVGILTVGDI 112
Score = 31.8 bits (71), Expect = 0.10
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMI 660
V +M VT+ + AL L K +
Sbjct: 3 VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPV 37
>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 153
Score = 39.2 bits (90), Expect = 4e-04
Identities = 16/125 (12%), Positives = 33/125 (26%)
Query: 563 VAVHANTNRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSLCIDDWNLEVEELKR 622
T ++ + +V + D++ +
Sbjct: 15 ATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGE 74
Query: 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682
+ T T L + + +VD + L G+L+L DI + Y
Sbjct: 75 ALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIY 134
Query: 683 AQAKT 687
+ T
Sbjct: 135 DKTTT 139
>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem
{Thermotoga maritima [TaxId: 2336]}
Length = 121
Score = 37.6 bits (86), Expect = 0.001
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 630 MRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678
+ V + AL L L ++ +VD + L G ++L D E
Sbjct: 66 VSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLE 114
Score = 34.1 bits (77), Expect = 0.016
Identities = 8/51 (15%), Positives = 21/51 (41%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
V + + + V + + E L M + + ++ D + G++ D+
Sbjct: 3 VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDL 53
>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein,
CBS tandem {Marbled electric ray (Torpedo marmorata)
[TaxId: 7788]}
Length = 160
Score = 38.1 bits (87), Expect = 0.001
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 1/89 (1%)
Query: 590 LLAEEEPYAINLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTL 649
L Y E +L + E+ F + + ++ T L + TL
Sbjct: 69 LQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTL 128
Query: 650 MLAEKQSCAMIVDNDNILIGLLTLGDIEE 678
A + L+G++ L +I+
Sbjct: 129 FSLLGLDRAYVTSMGK-LVGVVALAEIQA 156
Score = 32.7 bits (73), Expect = 0.063
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDN 665
K + V ++M ++ T+ + L ++ K VD +
Sbjct: 8 KYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPD 52
>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate
dehydrogenase CBS domains {Streptococcus pyogenes
[TaxId: 1314]}
Length = 126
Score = 37.2 bits (85), Expect = 0.001
Identities = 17/77 (22%), Positives = 31/77 (40%)
Query: 609 CIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILI 668
I + ++ + VT + T L A ++ + +VDN L
Sbjct: 45 IITNRDMRFISDYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLS 104
Query: 669 GLLTLGDIEEFSKYAQA 685
GL+T+ DIE+ ++ A
Sbjct: 105 GLITIKDIEKVIEFPHA 121
Score = 27.5 bits (60), Expect = 3.0
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 630 MRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN--DNILIGLLTLGDI 676
+ + + EA LM + S IV+ + L+G++T D+
Sbjct: 3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDM 51
>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 142
Score = 36.8 bits (84), Expect = 0.002
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTL 673
V ++M + + TV T + +A+ +M ++ D++ +GLL+
Sbjct: 5 VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSE 52
Score = 36.0 bits (82), Expect = 0.004
Identities = 9/50 (18%), Positives = 20/50 (40%)
Query: 630 MRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679
MR V + + + +VD+ ++G++TL D+ +
Sbjct: 75 MRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY 124
>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 135
Score = 36.5 bits (83), Expect = 0.003
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
+ + M VTV T+ A+ +M+ +VD ++ +G++T +
Sbjct: 76 IIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREF 126
Score = 31.1 bits (69), Expect = 0.19
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNIL 667
+ +M + L A + E +IV N+ I
Sbjct: 3 IETLMIKNPPILSKEDRLGSAFKKI-NEGGIGRIIVANEKIE 43
>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 132
Score = 36.3 bits (83), Expect = 0.003
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
+ M + + V +T + EA LM+ +++++D ++G T DI
Sbjct: 7 IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDI 57
Score = 32.1 bits (72), Expect = 0.091
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
V +M +T + T L E L M AE + ++++ + ++G+ TL D+
Sbjct: 71 PVERIMTRNLITANVNTPLGEVLRKM-AEHRIKHILIEEEGKIVGIFTLSDL 121
>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 141
Score = 36.1 bits (82), Expect = 0.004
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
V +VM T VT+ + A M+ ++ +I++ DN + G++T D+
Sbjct: 75 VKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDL 125
Score = 35.0 bits (79), Expect = 0.009
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIG 669
V M T+ T+ L +A+ LML ++D+DN ++G
Sbjct: 4 VKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVG 47
>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus
thermophilus [TaxId: 274]}
Length = 144
Score = 35.6 bits (81), Expect = 0.005
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 628 EVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
E+M + V V T E LM + +VD + L+G++T+ D+
Sbjct: 69 EIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDV 117
Score = 27.1 bits (59), Expect = 3.9
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 629 VMRTRYVTVLMTTLLIEALTLMLAEKQSCAMI-----VDNDNILIGLLTLGDI 676
+M YV V + E L + I VD L G+L+L D+
Sbjct: 6 LMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDL 58
>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 120
Score = 34.8 bits (79), Expect = 0.007
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNIL 667
V +VM T T+ +T L + L + + +++V +
Sbjct: 2 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRV 43
Score = 29.8 bits (66), Expect = 0.39
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 608 LCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNIL 667
+ + V V EVM VT+ + EA M+ ++ ++D +
Sbjct: 48 TWDVLEAIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDE-I 106
Query: 668 IGLLTLGDI 676
IG+++ DI
Sbjct: 107 IGVISATDI 115
>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 123
Score = 34.9 bits (79), Expect = 0.009
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 609 CIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILI 668
I L E+ R V + E L +M + ++ L+
Sbjct: 52 DIVIKGLAAGLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEHR-LV 110
Query: 669 GLLTLGDI 676
G++T DI
Sbjct: 111 GIVTEADI 118
Score = 33.3 bits (75), Expect = 0.028
Identities = 8/42 (19%), Positives = 12/42 (28%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNIL 667
++M V L A M I +D+ L
Sbjct: 3 ARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRL 44
>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 127
Score = 34.8 bits (79), Expect = 0.009
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNI 666
V E M+T+ ++V L + +M + ++VD +
Sbjct: 2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKP 46
Score = 34.5 bits (78), Expect = 0.012
Identities = 15/81 (18%), Positives = 26/81 (32%)
Query: 596 PYAINLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQ 655
V D + E M +T+ + + AL LM
Sbjct: 39 IVVDGNKPVGIITERDIVKAIGKGKSLETKAEEFMTASLITIREDSPITGALALMRQFNI 98
Query: 656 SCAMIVDNDNILIGLLTLGDI 676
+VD+ L G++++ DI
Sbjct: 99 RHLPVVDDKGNLKGIISIRDI 119
>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398
{Nitrosomonas europaea [TaxId: 915]}
Length = 127
Score = 33.6 bits (76), Expect = 0.021
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
V E+M + V + + + L+ + ++D+ +IGLL++GD+
Sbjct: 72 VKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGK-VIGLLSIGDL 121
Score = 31.7 bits (71), Expect = 0.10
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 626 VSEVMRTRY---VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
V +++ + V + + A+ M A+ ++V D L+G+LT D
Sbjct: 4 VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGA-LLVMKDEKLVGILTERDF 56
>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072
{Pyrobaculum aerophilum [TaxId: 13773]}
Length = 131
Score = 32.6 bits (73), Expect = 0.052
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVD--NDNILIG 669
SE+++ V++ T + E T + + A++ N +
Sbjct: 3 TSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVA 48
Score = 29.9 bits (66), Expect = 0.42
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 630 MRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
+ +TVL T + A M ++V+ + L+G+L++ D+
Sbjct: 72 IANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDL 118
>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus
subtilis [TaxId: 1423]}
Length = 132
Score = 32.3 bits (72), Expect = 0.068
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 626 VSEVM--RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGD 675
V + M + V + L AL ++ + ++D L GL+
Sbjct: 4 VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNM 55
Score = 31.9 bits (71), Expect = 0.098
Identities = 4/35 (11%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 649 LMLAEKQSCAMIVDNDNILIGLLTLGDI-EEFSKY 682
+ + +++ + G+ T + +E +K+
Sbjct: 97 FGMVINNGFVCVENDEQVFEGIFTRRVVLKELNKH 131
>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}
Length = 213
Score = 31.7 bits (71), Expect = 0.20
Identities = 9/58 (15%), Positives = 21/58 (36%)
Query: 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678
++ + EV L + + A ++ ++ +G + L D+EE
Sbjct: 134 SIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEE 191
>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3
subunit {Common earthworm (Lumbricus terrestris)
[TaxId: 6398]}
Length = 41
Score = 27.9 bits (62), Expect = 0.34
Identities = 3/19 (15%), Positives = 7/19 (36%)
Query: 15 QWHCCSSSSRVIPSSYQCN 33
+ C + I + C+
Sbjct: 7 EHQCGGDDPQCISKLFVCD 25
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId:
1423]}
Length = 399
Score = 31.3 bits (70), Expect = 0.46
Identities = 9/78 (11%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 255 VGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTS 314
N+ D ++ S + G + ++ + + S
Sbjct: 321 QNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASA--ANGLSSSVGWTPSLHGS 378
Query: 315 MVILSAVIASVVSEVGLG 332
+ + V ++V+++ G G
Sbjct: 379 IDASANVKSNVINQAGAG 396
>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common
earthworm (Lumbricus terrestris) [TaxId: 6398]}
Length = 42
Score = 27.1 bits (60), Expect = 0.65
Identities = 5/25 (20%), Positives = 7/25 (28%), Gaps = 1/25 (4%)
Query: 15 QWHCCSSSSRVIPSSYQCNKSEPSC 39
+ C I C+ E C
Sbjct: 7 ESECRGDVPECIHDLLFCD-GEKDC 30
>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 27.1 bits (60), Expect = 0.77
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 15 QWHCCSSSSRVIPSSYQCN 33
+ C +R IP ++C+
Sbjct: 9 DFSCGGRVNRCIPQFWRCD 27
>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 26.7 bits (59), Expect = 0.81
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 15 QWHCCSSSSRVIPSSYQCN 33
+ C + S++ IP S++C+
Sbjct: 5 EISCGAHSTQCIPVSWRCD 23
>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2
subunit {Common earthworm (Lumbricus terrestris)
[TaxId: 6398]}
Length = 41
Score = 26.8 bits (59), Expect = 0.85
Identities = 4/25 (16%), Positives = 7/25 (28%), Gaps = 1/25 (4%)
Query: 15 QWHCCSSSSRVIPSSYQCNKSEPSC 39
+ C + I C+ C
Sbjct: 6 TFQCGGNEQECISDLLVCD-GHKDC 29
>d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia
coli [TaxId: 562]}
Length = 143
Score = 28.8 bits (64), Expect = 1.1
Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 8/111 (7%)
Query: 568 NTNRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSLCIDDWNLEVEEL--KRRVF 625
N + R E+ T DL A+ + + + D + + K + F
Sbjct: 30 NEFKGRASELQRMET------DLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAF 83
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
+ R I+ +A Q ++VD + + + DI
Sbjct: 84 EQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDI 134
>d1c5ea_ b.85.2.1 (A:) Head decoration protein D (gpD, major capsid
protein D) {Bacteriophage lambda [TaxId: 10710]}
Length = 95
Score = 25.7 bits (56), Expect = 7.9
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 272 AGSAAGISS---GFNAAVAGCF----FAVESVIWPSSAADSSA 307
G+A GI + + + F E V+WP +A+D +
Sbjct: 40 DGAAVGILAVAADQTSTTLTFYKSGTFRYEDVLWPEAASDETK 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,499,860
Number of extensions: 115303
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 60
Length of query: 698
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 606
Effective length of database: 1,144,436
Effective search space: 693528216
Effective search space used: 693528216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)