Query 005401
Match_columns 698
No_of_seqs 614 out of 4934
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 22:52:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-79 4.8E-84 717.7 50.6 668 20-698 26-709 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.9E-60 4.2E-65 557.9 38.4 512 90-605 69-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.2E-42 6.9E-47 340.7 8.0 383 212-595 79-465 (873)
4 KOG4194 Membrane glycoprotein 100.0 4.4E-40 9.5E-45 325.6 7.2 390 68-460 54-449 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.8E-41 6.1E-46 319.9 -13.8 474 90-582 45-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 2.6E-41 5.6E-46 320.1 -14.5 475 67-559 46-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 5.7E-39 1.2E-43 334.7 -6.5 464 68-558 23-488 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.7E-37 5.8E-42 322.3 -6.0 484 71-581 3-488 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.1E-34 2.5E-39 289.3 -4.2 371 185-564 6-380 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.7E-34 3.6E-39 288.1 -4.6 360 67-437 8-373 (1255)
11 KOG4237 Extracellular matrix p 99.9 3E-28 6.5E-33 231.4 -2.9 445 34-556 34-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 6.9E-23 1.5E-27 240.6 26.6 363 66-460 532-903 (1153)
13 KOG4237 Extracellular matrix p 99.9 1.7E-26 3.6E-31 219.6 -3.1 300 307-607 68-384 (498)
14 PLN03210 Resistant to P. syrin 99.9 1.2E-22 2.5E-27 238.6 27.5 339 67-437 559-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.8 1.4E-20 3.1E-25 204.5 17.6 264 260-566 202-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.9E-20 6.2E-25 202.2 15.9 225 283-543 242-466 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 8.7E-19 1.9E-23 192.2 13.5 222 285-559 180-401 (754)
18 cd00116 LRR_RI Leucine-rich re 99.8 3.8E-20 8.2E-25 189.5 2.0 256 326-581 19-319 (319)
19 PRK15370 E3 ubiquitin-protein 99.8 3.5E-18 7.6E-23 187.4 12.4 247 259-535 178-428 (754)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.1E-19 4.7E-24 184.0 1.7 234 325-558 46-319 (319)
21 KOG0617 Ras suppressor protein 99.7 1.6E-18 3.5E-23 146.4 -4.7 157 86-248 29-186 (264)
22 KOG0617 Ras suppressor protein 99.7 1.9E-18 4.1E-23 145.9 -4.3 164 111-280 30-193 (264)
23 PLN03150 hypothetical protein; 99.5 8.6E-14 1.9E-18 152.8 13.6 150 18-173 367-526 (623)
24 PLN03150 hypothetical protein; 99.5 8.8E-14 1.9E-18 152.7 12.0 93 476-568 420-512 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 4.6E-13 9.9E-18 134.6 -4.2 195 376-580 73-271 (722)
26 KOG1909 Ran GTPase-activating 99.2 2.1E-12 4.6E-17 122.6 0.0 160 376-535 90-283 (382)
27 KOG1259 Nischarin, modulator o 99.2 4.8E-12 1E-16 117.3 1.0 203 374-587 210-417 (490)
28 KOG0532 Leucine-rich repeat (L 99.2 9.9E-13 2.1E-17 132.3 -4.0 194 354-557 75-271 (722)
29 KOG1909 Ran GTPase-activating 99.1 4.3E-12 9.2E-17 120.6 -1.0 231 352-582 28-311 (382)
30 COG4886 Leucine-rich repeat (L 99.1 5.9E-11 1.3E-15 125.0 7.0 139 423-567 160-298 (394)
31 KOG1259 Nischarin, modulator o 99.1 1.9E-11 4.1E-16 113.4 2.7 131 426-562 284-415 (490)
32 COG4886 Leucine-rich repeat (L 99.1 8.8E-11 1.9E-15 123.7 7.4 198 382-588 97-296 (394)
33 PF14580 LRR_9: Leucine-rich r 99.1 3.4E-11 7.4E-16 107.7 2.9 86 137-224 41-126 (175)
34 KOG3207 Beta-tubulin folding c 99.1 1.5E-11 3.3E-16 120.1 -0.6 209 351-560 118-340 (505)
35 KOG3207 Beta-tubulin folding c 99.0 4.9E-11 1.1E-15 116.6 -1.6 38 307-344 302-340 (505)
36 PF13855 LRR_8: Leucine rich r 99.0 4.7E-10 1E-14 82.4 3.3 61 498-558 1-61 (61)
37 PF14580 LRR_9: Leucine-rich r 98.9 9.5E-10 2.1E-14 98.5 5.7 84 497-583 41-127 (175)
38 KOG4658 Apoptotic ATPase [Sign 98.9 1.3E-09 2.8E-14 122.5 5.3 104 115-220 546-651 (889)
39 KOG4658 Apoptotic ATPase [Sign 98.9 8.9E-10 1.9E-14 123.7 4.0 202 66-273 523-731 (889)
40 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.5E-14 80.3 3.0 59 91-149 2-60 (61)
41 KOG0531 Protein phosphatase 1, 98.8 4.8E-10 1E-14 118.1 -0.4 224 326-586 91-322 (414)
42 KOG0531 Protein phosphatase 1, 98.8 7.8E-10 1.7E-14 116.5 -0.8 196 374-582 91-290 (414)
43 KOG1859 Leucine-rich repeat pr 98.8 2.8E-10 6.1E-15 117.9 -5.2 130 450-585 164-295 (1096)
44 KOG4579 Leucine-rich repeat (L 98.4 1.2E-08 2.5E-13 83.9 -3.8 135 451-588 28-165 (177)
45 KOG1859 Leucine-rich repeat pr 98.4 8.8E-09 1.9E-13 107.2 -6.8 127 307-439 165-292 (1096)
46 COG5238 RNA1 Ran GTPase-activa 98.2 2.5E-07 5.3E-12 85.4 0.5 112 424-535 155-285 (388)
47 KOG2120 SCF ubiquitin ligase, 98.2 6E-08 1.3E-12 90.6 -4.2 177 355-556 186-373 (419)
48 KOG2120 SCF ubiquitin ligase, 98.2 1.4E-08 3E-13 94.7 -8.5 202 66-269 159-373 (419)
49 PF08263 LRRNT_2: Leucine rich 98.2 2.1E-06 4.5E-11 57.3 4.0 41 22-62 2-43 (43)
50 COG5238 RNA1 Ran GTPase-activa 98.2 2.4E-07 5.3E-12 85.4 -1.0 113 185-297 156-286 (388)
51 KOG4579 Leucine-rich repeat (L 98.1 2.2E-07 4.8E-12 76.6 -2.7 116 448-567 51-167 (177)
52 KOG2982 Uncharacterized conser 98.1 9.9E-07 2.2E-11 82.6 0.5 204 88-291 69-287 (418)
53 PF12799 LRR_4: Leucine Rich r 98.0 4.1E-06 8.8E-11 56.0 2.7 36 523-559 2-37 (44)
54 PF12799 LRR_4: Leucine Rich r 97.9 1E-05 2.2E-10 54.0 3.1 38 498-536 1-38 (44)
55 KOG1187 Serine/threonine prote 97.9 5.6E-06 1.2E-10 84.7 2.3 33 666-698 61-94 (361)
56 KOG2982 Uncharacterized conser 97.9 3.6E-06 7.8E-11 78.9 0.4 64 497-560 198-263 (418)
57 PF13306 LRR_5: Leucine rich r 97.8 7.3E-05 1.6E-09 64.7 8.4 14 397-410 30-43 (129)
58 KOG1644 U2-associated snRNP A' 97.8 3.8E-05 8.3E-10 68.3 6.1 59 115-175 43-101 (233)
59 PF13306 LRR_5: Leucine rich r 97.8 8.4E-05 1.8E-09 64.3 8.1 106 396-506 6-111 (129)
60 KOG3665 ZYG-1-like serine/thre 97.7 1.2E-05 2.7E-10 88.5 1.6 181 66-249 60-264 (699)
61 KOG1644 U2-associated snRNP A' 97.7 7.9E-05 1.7E-09 66.3 6.1 105 331-437 43-151 (233)
62 PRK15386 type III secretion pr 97.6 0.00015 3.2E-09 73.6 7.5 136 398-557 48-188 (426)
63 PRK15386 type III secretion pr 97.6 0.00016 3.5E-09 73.3 7.6 138 374-533 48-188 (426)
64 KOG3665 ZYG-1-like serine/thre 97.2 8.7E-05 1.9E-09 81.9 0.3 106 138-246 122-231 (699)
65 KOG2739 Leucine-rich acidic nu 97.0 0.00038 8.2E-09 65.0 2.6 85 87-175 40-129 (260)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00054 1.2E-08 64.0 2.3 64 110-175 39-104 (260)
67 KOG4341 F-box protein containi 96.7 2.9E-05 6.3E-10 76.6 -7.6 82 91-172 139-226 (483)
68 KOG2123 Uncharacterized conser 96.7 5.8E-05 1.3E-09 70.4 -5.6 84 67-154 20-104 (388)
69 KOG2123 Uncharacterized conser 96.6 8.8E-05 1.9E-09 69.2 -4.9 65 159-225 38-102 (388)
70 KOG4341 F-box protein containi 96.6 4.4E-05 9.4E-10 75.4 -7.3 83 139-221 139-226 (483)
71 KOG1947 Leucine rich repeat pr 95.6 0.001 2.3E-08 72.3 -3.9 110 113-222 187-306 (482)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.0057 1.2E-07 33.8 0.2 11 501-511 3-13 (22)
73 PF00560 LRR_1: Leucine Rich R 95.2 0.0095 2.1E-07 32.9 1.1 21 523-544 1-21 (22)
74 KOG1947 Leucine rich repeat pr 95.2 0.0026 5.5E-08 69.3 -2.6 37 328-364 186-224 (482)
75 KOG4308 LRR-containing protein 93.9 0.00058 1.3E-08 72.2 -10.7 83 356-438 89-184 (478)
76 KOG4308 LRR-containing protein 93.9 0.00051 1.1E-08 72.6 -11.3 84 379-462 88-184 (478)
77 KOG1025 Epidermal growth facto 92.7 0.064 1.4E-06 58.5 2.2 18 681-698 698-715 (1177)
78 KOG0473 Leucine-rich repeat pr 92.2 0.0068 1.5E-07 55.4 -4.9 87 470-559 38-124 (326)
79 KOG3653 Transforming growth fa 92.1 0.12 2.5E-06 52.9 3.0 14 685-698 216-229 (534)
80 KOG0196 Tyrosine kinase, EPH ( 91.4 0.2 4.3E-06 54.5 4.0 32 667-698 607-648 (996)
81 TIGR00864 PCC polycystin catio 91.0 0.16 3.4E-06 63.3 3.2 45 552-596 1-46 (2740)
82 PLN03224 probable serine/threo 90.9 0.095 2.1E-06 56.3 1.1 22 677-698 143-164 (507)
83 smart00370 LRR Leucine-rich re 90.8 0.19 4.2E-06 28.9 1.9 18 546-563 2-19 (26)
84 smart00369 LRR_TYP Leucine-ric 90.8 0.19 4.2E-06 28.9 1.9 18 546-563 2-19 (26)
85 KOG0473 Leucine-rich repeat pr 90.7 0.0047 1E-07 56.5 -7.5 84 86-172 38-121 (326)
86 smart00370 LRR Leucine-rich re 88.9 0.38 8.2E-06 27.7 2.1 13 115-127 3-15 (26)
87 smart00369 LRR_TYP Leucine-ric 88.9 0.38 8.2E-06 27.7 2.1 13 115-127 3-15 (26)
88 KOG3864 Uncharacterized conser 87.9 0.06 1.3E-06 48.6 -2.6 34 67-100 102-135 (221)
89 PF13516 LRR_6: Leucine Rich r 86.7 0.23 4.9E-06 28.0 0.2 15 498-512 2-16 (24)
90 KOG3864 Uncharacterized conser 86.1 0.097 2.1E-06 47.3 -2.3 81 163-243 102-184 (221)
91 KOG2052 Activin A type IB rece 84.6 1.2 2.6E-05 45.5 4.2 15 684-698 216-230 (513)
92 KOG0193 Serine/threonine prote 83.6 0.5 1.1E-05 50.0 1.1 16 683-698 396-411 (678)
93 KOG4258 Insulin/growth factor 83.4 0.8 1.7E-05 50.3 2.6 18 681-698 996-1013(1025)
94 PLN03225 Serine/threonine-prot 80.1 0.63 1.4E-05 51.3 0.5 22 677-698 130-151 (566)
95 PF14575 EphA2_TM: Ephrin type 79.9 2 4.4E-05 32.5 3.0 18 667-684 54-72 (75)
96 KOG4242 Predicted myosin-I-bin 79.2 8.6 0.00019 39.9 7.9 15 260-274 355-369 (553)
97 smart00365 LRR_SD22 Leucine-ri 75.1 2.5 5.4E-05 24.3 1.7 16 545-560 1-16 (26)
98 KOG0663 Protein kinase PITSLRE 71.9 1.1 2.5E-05 43.9 -0.3 23 676-698 73-95 (419)
99 PTZ00284 protein kinase; Provi 71.3 1.3 2.7E-05 47.9 -0.1 27 672-698 121-148 (467)
100 smart00364 LRR_BAC Leucine-ric 68.9 3.6 7.7E-05 23.6 1.4 13 523-535 3-15 (26)
101 smart00368 LRR_RI Leucine rich 68.8 3.9 8.5E-05 24.0 1.7 14 546-559 2-15 (28)
102 KOG4242 Predicted myosin-I-bin 68.0 21 0.00045 37.2 7.5 111 472-582 352-481 (553)
103 PTZ00036 glycogen synthase kin 65.3 2.4 5.1E-05 45.4 0.4 22 677-698 64-85 (440)
104 PF08693 SKG6: Transmembrane a 62.5 4.1 8.9E-05 26.1 1.0 10 625-634 13-22 (40)
105 PF15102 TMEM154: TMEM154 prot 60.2 8 0.00017 33.1 2.6 11 641-651 76-86 (146)
106 cd05622 STKc_ROCK1 Catalytic d 58.6 3.5 7.5E-05 42.9 0.3 27 672-698 35-62 (371)
107 KOG0600 Cdc2-related protein k 57.0 2.5 5.4E-05 44.0 -1.1 19 680-698 118-136 (560)
108 cd05621 STKc_ROCK2 Catalytic d 55.9 4.2 9E-05 42.3 0.3 23 676-698 40-62 (370)
109 PRK09605 bifunctional UGMP fam 55.6 7.8 0.00017 42.6 2.4 23 676-698 330-352 (535)
110 KOG0986 G protein-coupled rece 54.7 5.9 0.00013 40.8 1.1 19 678-696 184-202 (591)
111 cd05596 STKc_ROCK Catalytic do 53.5 3.9 8.5E-05 42.5 -0.4 22 677-698 41-62 (370)
112 KOG0194 Protein tyrosine kinas 53.3 6.6 0.00014 41.6 1.3 14 685-698 163-176 (474)
113 PHA03210 serine/threonine kina 52.6 6.2 0.00013 43.0 1.0 21 677-697 146-166 (501)
114 KOG1035 eIF-2alpha kinase GCN2 52.6 4.1 9E-05 47.3 -0.3 22 677-698 477-498 (1351)
115 PHA03209 serine/threonine kina 52.2 6.2 0.00013 40.8 0.9 23 676-698 63-85 (357)
116 KOG0192 Tyrosine kinase specif 50.9 5.9 0.00013 40.7 0.5 12 687-698 49-60 (362)
117 KOG3763 mRNA export factor TAP 49.9 7 0.00015 41.4 0.8 65 495-560 215-284 (585)
118 PLN00034 mitogen-activated pro 47.4 6.8 0.00015 40.4 0.3 18 681-698 76-93 (353)
119 KOG1166 Mitotic checkpoint ser 45.5 8 0.00017 44.7 0.5 19 680-698 699-717 (974)
120 PF02009 Rifin_STEVOR: Rifin/s 43.2 13 0.00028 36.7 1.5 14 637-650 270-283 (299)
121 KOG3763 mRNA export factor TAP 43.0 9.8 0.00021 40.4 0.6 14 139-152 271-284 (585)
122 PF04478 Mid2: Mid2 like cell 42.1 13 0.00027 32.2 1.0 11 678-688 111-121 (154)
123 KOG0605 NDR and related serine 39.3 14 0.00031 38.9 1.1 20 678-697 140-159 (550)
124 PF12191 stn_TNFRSF12A: Tumour 38.9 13 0.00028 30.8 0.6 7 582-588 33-39 (129)
125 PHA03212 serine/threonine kina 38.2 13 0.00029 38.9 0.7 20 679-698 92-111 (391)
126 smart00367 LRR_CC Leucine-rich 37.9 24 0.00052 20.0 1.5 11 114-124 2-12 (26)
127 PHA03211 serine/threonine kina 37.5 13 0.00027 40.0 0.4 19 680-698 170-188 (461)
128 KOG1095 Protein tyrosine kinas 37.4 15 0.00031 42.8 0.9 18 681-698 694-711 (1025)
129 KOG4257 Focal adhesion tyrosin 34.6 14 0.0003 39.9 0.2 17 682-698 392-408 (974)
130 PF01299 Lamp: Lysosome-associ 32.6 53 0.0011 33.0 3.9 6 549-554 231-236 (306)
131 KOG1026 Nerve growth factor re 30.7 45 0.00096 37.5 3.2 17 682-698 489-505 (774)
132 TIGR00864 PCC polycystin catio 30.2 29 0.00064 44.6 1.9 72 504-575 1-74 (2740)
133 KOG1024 Receptor-like protein 30.1 43 0.00093 34.2 2.7 21 678-698 283-303 (563)
134 KOG1151 Tousled-like protein k 29.3 7.9 0.00017 39.6 -2.5 14 685-698 469-482 (775)
135 PF12877 DUF3827: Domain of un 28.9 55 0.0012 35.6 3.4 27 622-648 268-294 (684)
136 PF06024 DUF912: Nucleopolyhed 28.9 51 0.0011 26.6 2.5 27 625-651 64-90 (101)
137 PF06084 Cytomega_TRL10: Cytom 28.3 97 0.0021 25.0 3.8 28 574-606 12-40 (150)
138 PF15050 SCIMP: SCIMP protein 27.9 43 0.00092 27.4 1.8 7 641-647 26-32 (133)
139 PHA03207 serine/threonine kina 26.6 25 0.00055 36.8 0.5 19 680-698 93-111 (392)
140 PTZ00046 rifin; Provisional 25.7 41 0.00089 34.0 1.7 11 640-650 332-342 (358)
141 TIGR01477 RIFIN variant surfac 25.6 42 0.0009 33.8 1.7 11 640-650 327-337 (353)
142 KOG0592 3-phosphoinositide-dep 24.9 36 0.00077 36.3 1.2 18 681-698 75-92 (604)
143 KOG1006 Mitogen-activated prot 24.2 21 0.00046 34.3 -0.5 12 686-697 71-82 (361)
144 PF01102 Glycophorin_A: Glycop 24.1 62 0.0013 27.2 2.2 16 623-638 67-82 (122)
145 PF08374 Protocadherin: Protoc 22.8 37 0.00081 31.2 0.8 8 635-642 50-57 (221)
146 PHA03283 envelope glycoprotein 22.6 1E+02 0.0022 32.7 3.9 30 628-657 404-434 (542)
147 PHA03265 envelope glycoprotein 20.0 51 0.0011 32.7 1.1 16 638-653 364-379 (402)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-79 Score=717.72 Aligned_cols=668 Identities=38% Similarity=0.650 Sum_probs=583.6
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCC
Q 005401 20 SLNQDGLYLRRVKLGLSDPTDSLASWDDTRVDTPCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYN 99 (698)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~C~w~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~ 99 (698)
..++|+.||+++|+.+.+|.+...+|+... ++|.|.|++|+. .++|+.|+|+++.+++..+..|..+++|++|+|++
T Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~--~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~ 102 (968)
T PLN00113 26 LHAEELELLLSFKSSINDPLKYLSNWNSSA--DVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN 102 (968)
T ss_pred CCHHHHHHHHHHHHhCCCCcccCCCCCCCC--CCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCC
Confidence 355889999999999988887788998654 799999999985 46899999999999999999999999999999999
Q ss_pred CCCcccCCcCC-cCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCcc
Q 005401 100 NYINSSLPLDI-STCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTI 178 (698)
Q Consensus 100 n~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 178 (698)
|.+.+.+|..+ ..+++|++|++++|.+.+.+|. ..+++|++|++++|.+++..|..++++++|++|++++|.+.+..
T Consensus 103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 180 (968)
T PLN00113 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180 (968)
T ss_pred CccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccC
Confidence 99998878765 4999999999999999988775 46899999999999999999999999999999999999999999
Q ss_pred CccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCC
Q 005401 179 SSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEM 258 (698)
Q Consensus 179 ~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 258 (698)
|..+.++++|++|++++|.+. +.+|..++++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+.++
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLV-GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCc-CcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 999999999999999999998 6789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccc-cccEEEccCccccccCChhccCCCCCCEEEc
Q 005401 259 KSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKL 337 (698)
Q Consensus 259 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 337 (698)
++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+ +|+.|++++|.+.+..|..+..+++|+.|++
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 999999999999999999999999999999999999999999888877 8999999999999999999999999999999
Q ss_pred cCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCc
Q 005401 338 FNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGS 417 (698)
Q Consensus 338 ~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 417 (698)
++|.+.+..|..++.+++|+.|++++|.+++.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.
T Consensus 340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccC
Q 005401 418 VPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKL 497 (698)
Q Consensus 418 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 497 (698)
.|..|..++.|+.|++++|.+++..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++.+..|..+..+
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence 99999999999999999999999999989999999999999999998888765 46899999999999999999999999
Q ss_pred CCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEc
Q 005401 498 SQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNL 576 (698)
Q Consensus 498 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~l 576 (698)
++|+.|+|++|.+.+.+|+.+.++++|++|+|++|.+++.+|..|..+++|+.|||++|++++.+|..+..++ |+.+++
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l 578 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578 (968)
T ss_pred hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred ccCcCcccCChh-hhhhcCCcccCCCCCCCCCCC----CCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHhhheeeehh
Q 005401 577 SNNRLSGELPPL-YAKEMYRGSFLGNPGLCGDLA----GLCPKTGRSKNEGSLWIFGLIFLLAGVVFVVGVIWFYVKYRK 651 (698)
Q Consensus 577 s~N~l~~~~~~~-~~~~~~~~~~~~n~~~c~~~~----~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (698)
++|++.|.+|.. .+..+....+.||+.+|+... .+|.... +.....+++++++++++++++++++++++++++
T Consensus 579 s~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (968)
T PLN00113 579 SHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVR--KTPSWWFYITCTLGAFLVLALVAFGFVFIRGRN 656 (968)
T ss_pred cCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCcccc--ccceeeeehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999976 667777888999999998532 2354221 111222222222222222222222222222222
Q ss_pred ccccccc-ccccccc--cc-----ccccchHHHHHhCCCcCCeEecCCCceEEeC
Q 005401 652 LKKTKKG-MALSKWK--SF-----HKIGFSEFEIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 652 ~~~~~~~-~~~~~~~--~~-----~~~~~~~~~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
.++.++. .....|. .+ ..++++ +....|.+.++||+|+||.||||
T Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ig~G~~g~Vy~~ 709 (968)
T PLN00113 657 NLELKRVENEDGTWELQFFDSKVSKSITIN--DILSSLKEENVISRGKKGASYKG 709 (968)
T ss_pred cccccccccccccccccccccccchhhhHH--HHHhhCCcccEEccCCCeeEEEE
Confidence 1111111 0111122 01 112333 34456889999999999999986
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-60 Score=557.88 Aligned_cols=512 Identities=35% Similarity=0.550 Sum_probs=479.0
Q ss_pred CCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccC-CCCCCCEEECCCCcCcccCCcCccCCCCccEEE
Q 005401 90 PYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLS-QLKNLKSLELQENNFTGDIPASFGEFTQLESLS 168 (698)
Q Consensus 90 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 168 (698)
.+++.|+|++|.+++..+.+|..+++|++|+|++|.+.+.+|..+. .+++|++|+|++|.+++.+|. ..+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4799999999999999999999999999999999999987776654 999999999999999988775 5689999999
Q ss_pred ccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCc
Q 005401 169 LFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLT 248 (698)
Q Consensus 169 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 248 (698)
+++|.+++..|..++++++|++|++++|.+. ..+|..++++++|++|++++|.+.+..|..+.++++|+.|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV-GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCccc-ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 9999999999999999999999999999988 688999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccc-cccEEEccCccccccCChhcc
Q 005401 249 GSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIA 327 (698)
Q Consensus 249 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~ 327 (698)
+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..+..+ +|++|++++|.+.+.+|..+.
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 9999999999999999999999999999999999999999999999999999888877 899999999999999999999
Q ss_pred CCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEE
Q 005401 328 RSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRV 407 (698)
Q Consensus 328 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 407 (698)
.+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 385 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCccc
Q 005401 408 RLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFA 487 (698)
Q Consensus 408 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 487 (698)
++++|.+.+..|..+..+++|+.|++++|.+++..|..+..++.|+.|++++|.+++.+|..+..+++|+.|++++|.+.
T Consensus 386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred ccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCccccc
Q 005401 488 GQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQ 567 (698)
Q Consensus 488 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 567 (698)
+.+|..+. .++|+.|++++|++++..|..+.++++|++|+|++|++.+.+|..+.++++|++|+|++|.+++.+|..+.
T Consensus 466 ~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 544 (968)
T PLN00113 466 GGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544 (968)
T ss_pred eecCcccc-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence 98887664 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-cCeEEcccCcCcccCChhhhh--hcCCcccCCCCCCC
Q 005401 568 NLR-LNVLNLSNNRLSGELPPLYAK--EMYRGSFLGNPGLC 605 (698)
Q Consensus 568 ~~~-L~~L~ls~N~l~~~~~~~~~~--~~~~~~~~~n~~~c 605 (698)
.++ |+.|++++|++++.+|..... ........+|+..+
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 988 999999999999999976322 12223344565443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-42 Score=340.70 Aligned_cols=383 Identities=22% Similarity=0.225 Sum_probs=342.9
Q ss_pred CCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccC
Q 005401 212 NLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDAS 291 (698)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 291 (698)
.-+.|++++|++....+..|.++++|+.+++..|.++ .+|.......+++.|++.+|.++..-...++.++.|+.+|++
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 4466888888888888888888888888888888887 677766667778999999998887777888888999999999
Q ss_pred CCccccccCccccc-ccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceec
Q 005401 292 MNQLTGTIPNELCE-LQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEI 370 (698)
Q Consensus 292 ~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~ 370 (698)
.|.++..-...+.. .++++|+|+.|.|+..-...|..+.+|..|.+++|+++...+..|.++++|+.|++..|+|.-.-
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 99988554455554 48999999999999877788999999999999999999888888989999999999999987554
Q ss_pred CcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCC
Q 005401 371 PEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGAN 450 (698)
Q Consensus 371 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 450 (698)
--.|.++++|+.|.+..|.+...-...|..|.++++|+|+.|+++.....++.++..|+.|+++.|.|..+-+..+..++
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 56789999999999999999988888999999999999999999998889999999999999999999999999999999
Q ss_pred CCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccch---hhhccCCCCEE
Q 005401 451 NLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPE---GIESWKNINEL 527 (698)
Q Consensus 451 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L 527 (698)
+|++|+|+.|+++...+..|..+..|++|.|++|++......+|..+++|++|||++|.++..+.+ .|.++++|+.|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 999999999999988888999999999999999999988888999999999999999999877654 57889999999
Q ss_pred eCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccccCeEEcccCcCcccCChhhhhhcCC
Q 005401 528 NLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLRLNVLNLSNNRLSGELPPLYAKEMYR 595 (698)
Q Consensus 528 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~~~ 595 (698)
+|.+|++..+.-.+|.++++|++|||.+|.|....|++|..+.|++|-+..-.|-|+|...|+..|..
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLY 465 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHH
Confidence 99999999666689999999999999999999999999999999999999999999999998877753
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-40 Score=325.62 Aligned_cols=390 Identities=23% Similarity=0.237 Sum_probs=264.4
Q ss_pred EEEEECCCCCCCcCCCccccCC--CCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEEC
Q 005401 68 VTSVNLSQSQLSGPFPIFFCRL--PYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLEL 145 (698)
Q Consensus 68 v~~L~l~~~~l~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 145 (698)
...||.+++.+..+....+..+ +.-+.|++++|+++.+-+..|.++++|+.+++.+|.+. .+|..-....+|+.|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 3445555555554332222222 24567899999888888888888888888888888887 56766666667888888
Q ss_pred CCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCC
Q 005401 146 QENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLG 225 (698)
Q Consensus 146 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 225 (698)
.+|.|+.+-.+++..++.|+.||||.|.++.+....|..-.++++|+|++|.++. --...|.++.+|.+|.|+.|+++.
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc-cccccccccchheeeecccCcccc
Confidence 8888887777778888888888888888887777777777788888888888873 224567777788888888888887
Q ss_pred cCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCccccc
Q 005401 226 EIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCE 305 (698)
Q Consensus 226 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 305 (698)
..+..|+++++|+.|+|..|+|.-.--..|..+++|+.|.+..|.+.......|..+.++++|+++.|+++..-..++..
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 77777888888888888888876333455677777777777777777666666777777777777777776555555555
Q ss_pred c-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEe
Q 005401 306 L-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLV 384 (698)
Q Consensus 306 ~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ 384 (698)
+ .|+.|+++.|.|...-++....+++|++|++++|+++...+..|..+..|++|++++|++...-...|..+++|++||
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD 371 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence 5 566666666666655555555666666666666666655555666666666666666666555455555566666666
Q ss_pred cccCcCcccCC---ccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCc
Q 005401 385 LIYNSFSGKIP---QSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRN 460 (698)
Q Consensus 385 L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 460 (698)
|+.|.+...+. ..|.++++|+.|++.+|++..+...+|.+++.|+.|+|.+|.+-.+.+.+|..+ .|++|.++.-
T Consensus 372 Lr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 372 LRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred CcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 66666554332 345556666666666666665555566666666666666666655555555555 5555555443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.8e-41 Score=319.87 Aligned_cols=474 Identities=26% Similarity=0.370 Sum_probs=372.5
Q ss_pred CCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEc
Q 005401 90 PYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSL 169 (698)
Q Consensus 90 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 169 (698)
..|+.+.+++|.+.... ..+.++..|.+|++++|++. ..|.+++.+..++.++.++|+++ .+|..+..+.+|+.+++
T Consensus 45 v~l~~lils~N~l~~l~-~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLR-EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhhcc-HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 46888999999886544 46889999999999999998 67778889999999999999998 78888999999999999
Q ss_pred cCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcc
Q 005401 170 FNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTG 249 (698)
Q Consensus 170 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 249 (698)
++|.+. ..++.++.+..|+.++..+|+++ .+|..++++.+|..+++.+|++....|+.+. ++.|++||...|.++
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~--slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS--SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE- 196 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccc--cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-
Confidence 999998 55667888899999999999988 7889999999999999999999866555544 999999999998887
Q ss_pred cCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccc-cc-cccEEEccCccccccCChhcc
Q 005401 250 SIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELC-EL-QLESLNLYENRLEGTLPESIA 327 (698)
Q Consensus 250 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~-~L~~L~l~~n~l~~~~~~~~~ 327 (698)
.+|..++.+.+|+-|++..|++. ..| .|..+..|.++.++.|++. .+|.+.+ .+ ++..||+.+|+++ ..|+.+.
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c 272 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC 272 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH
Confidence 78889999999999999999987 455 7889999999999999988 6666665 44 7889999999998 7888888
Q ss_pred CCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCC--CCCCEE-------ecccCc---C-ccc-
Q 005401 328 RSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEK--GSLEDL-------VLIYNS---F-SGK- 393 (698)
Q Consensus 328 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~--~~L~~L-------~L~~n~---l-~~~- 393 (698)
-+.+|++||+++|.++ ..|..++++ .|+.|-+.+|.+..+-.+.+..- .-|++| -++... - ...
T Consensus 273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 8888999999999998 567788888 89999999998753311111100 001111 011100 0 000
Q ss_pred CCc---cccCCCCCcEEEccCccCcCccCccccCCC--CCCEEEccCCccccccchhhhcCCCCC-eeeccCccceeecC
Q 005401 394 IPQ---SLGKCRSLRRVRLRHNLLSGSVPEMFWGLP--HMYLFELADNSFTGKISKSISGANNLS-SLLVSRNNFSGSIP 467 (698)
Q Consensus 394 ~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~ 467 (698)
.+. ......+.+.|++++-+++.+..+.|..-. -.+..+++.|++.. +|..+..+..+. .+.+++|.+. .+|
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~is-fv~ 428 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKIS-FVP 428 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccc-cch
Confidence 111 122356788888888888855555554332 37788999999874 455555554444 4555555554 788
Q ss_pred ccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCC
Q 005401 468 DEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPV 547 (698)
Q Consensus 468 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 547 (698)
..+..+++|..|++++|.+. .+|..+..+..|+.||+|+|++. .+|+.+..+..++.+-.++|++....|+.+.++.+
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred HHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 88889999999999988876 77888888889999999999988 78888888888888888889998777777999999
Q ss_pred CCEEeCCCCcCcccCcccccccc-cCeEEcccCcCc
Q 005401 548 LNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLS 582 (698)
Q Consensus 548 L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~ 582 (698)
|..|||.+|.+. .+|..+++++ +++|+++||||.
T Consensus 507 L~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 507 LTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 999999999998 6777889888 999999999998
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-41 Score=320.09 Aligned_cols=475 Identities=26% Similarity=0.359 Sum_probs=382.2
Q ss_pred cEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECC
Q 005401 67 RVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQ 146 (698)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 146 (698)
....+.++.|.+.. +...+.++..|++|++++|++.. .|.+++.+..++.++.++|++. .+|..+..+.+|+.++.+
T Consensus 46 ~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchhh-ccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 46678899998884 45668899999999999999865 5668999999999999999998 788889999999999999
Q ss_pred CCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCc
Q 005401 147 ENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGE 226 (698)
Q Consensus 147 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 226 (698)
+|.+. ..++.++.+..|+.++..+|+++ ..|..+.++.+|..+++.+|.+. .+|...-+++.|++|+...|-+. .
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~--~l~~~~i~m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK--ALPENHIAMKRLKHLDCNSNLLE-T 197 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh--hCCHHHHHHHHHHhcccchhhhh-c
Confidence 99998 67788999999999999999998 56677889999999999999998 66776667999999999998886 6
Q ss_pred CCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCc-ccccccccceeccCCCccccccCccccc
Q 005401 227 IPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPV-KWVNMTTLLRFDASMNQLTGTIPNELCE 305 (698)
Q Consensus 227 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 305 (698)
+|+.++.+.+|+.|++..|++. ..| .|..+..|.+++++.|.+. .+|. ....++++..||+.+|+++ ..|++++.
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl 273 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL 273 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence 7888999999999999999998 567 7999999999999999998 4454 4558999999999999999 78999998
Q ss_pred c-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccC-----CCCCCE----EEcccCcc----cee-c
Q 005401 306 L-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGK-----YSPLTT----LDLSYNQF----SGE-I 370 (698)
Q Consensus 306 ~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-----~~~L~~----L~ls~n~l----~~~-~ 370 (698)
+ +|+.||+++|.++ .+|..++++ .|+.|-+.+|.+..+-.+.+.. ++.|+. =.++..+- ... .
T Consensus 274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~ 351 (565)
T KOG0472|consen 274 LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLP 351 (565)
T ss_pred hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCC
Confidence 8 7999999999999 678889998 9999999999876321111110 001111 00111000 000 1
Q ss_pred Ccc---cCCCCCCCEEecccCcCcccCCccccCC--CCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchh
Q 005401 371 PEG---LCEKGSLEDLVLIYNSFSGKIPQSLGKC--RSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKS 445 (698)
Q Consensus 371 ~~~---~~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 445 (698)
+.. .....+.+.|++++-+++.+..+.|..- .-...++++.|++. ..|..+..+..+.+.-+..|+..+.+|..
T Consensus 352 ~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~ 430 (565)
T KOG0472|consen 352 SESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLE 430 (565)
T ss_pred CCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHH
Confidence 111 1233456777888777774433444432 23778889999887 55665555555544333444444567888
Q ss_pred hhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCC
Q 005401 446 ISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNIN 525 (698)
Q Consensus 446 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 525 (698)
++.+++|..|++++|.+. .+|..++.+..|+.|+++.|+|. .+|.++..+..++.+-.++|++....|+.+.++.+|.
T Consensus 431 l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred HHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 889999999999998887 78888999999999999999887 7888888878888888888999988888899999999
Q ss_pred EEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCc
Q 005401 526 ELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 526 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 559 (698)
+|||.+|.+. .+|..++++.+|++|++++|.+.
T Consensus 509 tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 509 TLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9999999999 88999999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-39 Score=334.67 Aligned_cols=464 Identities=28% Similarity=0.354 Sum_probs=232.4
Q ss_pred EEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCC
Q 005401 68 VTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQE 147 (698)
Q Consensus 68 v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 147 (698)
++.|+++.|-+....-....+.-+|+.|++++|.+. .+|..+..+++|+.|+++.|.+. ..|....++.+|+++.|..
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence 555555555544332233333334666666666553 34555566666666666666655 4455555666666666666
Q ss_pred CcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcC
Q 005401 148 NNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEI 227 (698)
Q Consensus 148 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 227 (698)
|.+. ..|.++..+.+|+.|+++.|.+. .+|..+..+..++.+..++|.-. .. ++.. .++.+++..|.+.+.+
T Consensus 101 n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~-~~----lg~~-~ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 101 NRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI-QR----LGQT-SIKKLDLRLNVLGGSF 172 (1081)
T ss_pred chhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh-hh----hccc-cchhhhhhhhhcccch
Confidence 5555 55666666666666666666655 44455555566666666666111 11 1111 1555556656555555
Q ss_pred CccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCccccccc
Q 005401 228 PESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQ 307 (698)
Q Consensus 228 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 307 (698)
+..+..++. .||+.+|.+. . ..+..+.+|+.|....|++.... -..++++.|+.+.|.++ .....+....
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~-~~~~~p~p~n 242 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLT-TLDVHPVPLN 242 (1081)
T ss_pred hcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcce-eecccccccc
Confidence 555555444 5666666554 1 12445555555555555544211 12345555555555555 2222233335
Q ss_pred ccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccc
Q 005401 308 LESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIY 387 (698)
Q Consensus 308 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~ 387 (698)
+++++++.|+++ .+|+++..+.+|+.++..+|+++ .+|..+....+|+.|.+.+|.+. -+|......++|++|+|..
T Consensus 243 l~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 243 LQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehh
Confidence 555555555555 33455555555555555555553 34444445555555555555554 3333344455555555555
Q ss_pred CcCcccCCccccCCCC-CcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeec
Q 005401 388 NSFSGKIPQSLGKCRS-LRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSI 466 (698)
Q Consensus 388 n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 466 (698)
|++....+..+.-... |..++.+.|++.......=...+.|+.|++.+|.++...-..+.++..|+.|+|++|++....
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence 5554322222222222 444444444444222111122344555555555555554444555555555555555554222
Q ss_pred CccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCccc-CCcccCCC
Q 005401 467 PDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGE-IPSEIGNL 545 (698)
Q Consensus 467 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l 545 (698)
...+.++..|++|+|++|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|+|.|.++.. +|.... -
T Consensus 400 as~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~ 475 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-S 475 (1081)
T ss_pred HHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-C
Confidence 233445555555555555554 34455555555555555555554 333 445555555555555555432 222211 1
Q ss_pred CCCCEEeCCCCcC
Q 005401 546 PVLNYLDLSGNLF 558 (698)
Q Consensus 546 ~~L~~L~Ls~N~l 558 (698)
++|++||+++|.-
T Consensus 476 p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 476 PNLKYLDLSGNTR 488 (1081)
T ss_pred cccceeeccCCcc
Confidence 4555555555553
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-37 Score=322.28 Aligned_cols=484 Identities=27% Similarity=0.342 Sum_probs=400.5
Q ss_pred EECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcC
Q 005401 71 VNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNF 150 (698)
Q Consensus 71 L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 150 (698)
+|.++.+++- +|..+.....++.|+++.|.+-...-+...+.-+|+.||+++|++. ..|..+..+.+|+.|.++.|.+
T Consensus 3 vd~s~~~l~~-ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLEL-IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCcc-cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 4566666663 3444444455999999999765444445566777999999999988 7788899999999999999999
Q ss_pred cccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCcc
Q 005401 151 TGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPES 230 (698)
Q Consensus 151 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 230 (698)
. ..|.+..++.+|+++.|.+|.+. ..|..+..+.+|++|++++|.+. .+|..+..++.+..+..++|.....
T Consensus 81 ~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~--~~Pl~i~~lt~~~~~~~s~N~~~~~---- 152 (1081)
T KOG0618|consen 81 R-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG--PIPLVIEVLTAEEELAASNNEKIQR---- 152 (1081)
T ss_pred h-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC--CCchhHHhhhHHHHHhhhcchhhhh----
Confidence 8 67888999999999999999887 77888999999999999999998 7888889999999999999832222
Q ss_pred ccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccccccE
Q 005401 231 LTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLES 310 (698)
Q Consensus 231 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~ 310 (698)
++... ++.+++..|.+.+.++..+..++. .|++.+|.+. ...+..+.+|+.+....|++... .....+++.
T Consensus 153 lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l---~~~g~~l~~ 223 (1081)
T KOG0618|consen 153 LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL---EISGPSLTA 223 (1081)
T ss_pred hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE---EecCcchhe
Confidence 22222 888999999999888888887777 8999999986 34567888999999999887732 233347899
Q ss_pred EEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcC
Q 005401 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSF 390 (698)
Q Consensus 311 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l 390 (698)
|+.++|.++...+. ....+|+++++++|++++ +|+++..+.+|+.++..+|.++ .+|..+....+|+.|...+|.+
T Consensus 224 L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel 299 (1081)
T KOG0618|consen 224 LYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNEL 299 (1081)
T ss_pred eeeccCcceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhh
Confidence 99999999844333 234689999999999995 5699999999999999999996 7778888889999999999999
Q ss_pred cccCCccccCCCCCcEEEccCccCcCccCccccCCCC-CCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCcc
Q 005401 391 SGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPH-MYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDE 469 (698)
Q Consensus 391 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 469 (698)
. -+|.....+++|++|+|..|++....+..|..... +..++.+.|++.......-..++.|+.|.+.+|.++..+-..
T Consensus 300 ~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~ 378 (1081)
T KOG0618|consen 300 E-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV 378 (1081)
T ss_pred h-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh
Confidence 8 56667788999999999999999666655555554 788888888887554333445678999999999999888888
Q ss_pred ccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCC
Q 005401 470 VGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLN 549 (698)
Q Consensus 470 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 549 (698)
+.+.+.|+.|+|++|++.......+.++..|++|+||+|+++ .+|+.+..+..|++|...+|.+. ..| .+..++.|+
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~ 455 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLK 455 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcce
Confidence 899999999999999998776778999999999999999999 77899999999999999999999 677 789999999
Q ss_pred EEeCCCCcCccc-CcccccccccCeEEcccCcC
Q 005401 550 YLDLSGNLFSGK-IPLELQNLRLNVLNLSNNRL 581 (698)
Q Consensus 550 ~L~Ls~N~l~~~-~p~~~~~~~L~~L~ls~N~l 581 (698)
.+|+|.|+++.. +|......+|++||++||..
T Consensus 456 ~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 456 VLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred EEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 999999999873 44443334499999999985
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.1e-34 Score=289.26 Aligned_cols=371 Identities=29% Similarity=0.411 Sum_probs=264.6
Q ss_pred cCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcee
Q 005401 185 ISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQI 264 (698)
Q Consensus 185 l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 264 (698)
++-.+-.|+++|.++.+.+|.....+++++.|.|...++. .+|+.++.+.+|+.|.+++|++. .+...+..++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 3445556666666665666666666667777766666655 55666677777777777777665 344556666667777
Q ss_pred eccCCcce-eccCcccccccccceeccCCCccccccCcccccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcC
Q 005401 265 ELFKNSLS-GELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKL 342 (698)
Q Consensus 265 ~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 342 (698)
.+..|.+. .-+|..+..+..|..||+++|++. ..|..+... ++-.|+|++|+|..+....+.+++.|-.|++++|++
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 77666654 235666666777777777777776 455555444 566777777777744444556777777788888877
Q ss_pred CcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCc-ccCCccccCCCCCcEEEccCccCcCccCcc
Q 005401 343 RGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFS-GKIPQSLGKCRSLRRVRLRHNLLSGSVPEM 421 (698)
Q Consensus 343 ~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 421 (698)
. .+|..+..+..|++|++++|.+.----..+..+++|+.|.+++.+-+ .-+|.++..+.+|..+|++.|.+. .+|..
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 7 45556677777888888887664332233445566777777765443 346777778888888888888877 67777
Q ss_pred ccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCccc-ccccchhccCCCC
Q 005401 422 FWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFA-GQIPGSLAKLSQL 500 (698)
Q Consensus 422 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L 500 (698)
+.++++|+.|++++|+++.. ........+|++|++|+|+++ .+|+++..++.|+.|++.+|+++ .-+|..++.+.+|
T Consensus 241 ly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred HhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 78888888888888887743 223344567888888888887 78888888888888888888776 3467888888889
Q ss_pred CeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcc
Q 005401 501 GNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPL 564 (698)
Q Consensus 501 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 564 (698)
+++..++|.+. ..|+.+..|..|+.|.|++|++- .+|+++.-++.|+.||+..|.--...|.
T Consensus 319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 99888888887 88888888889999999999888 7888888888899999988876545543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.7e-34 Score=288.12 Aligned_cols=360 Identities=28% Similarity=0.433 Sum_probs=170.6
Q ss_pred cEEEEECCCCCCC-cCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEEC
Q 005401 67 RVTSVNLSQSQLS-GPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLEL 145 (698)
Q Consensus 67 ~v~~L~l~~~~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 145 (698)
-|+.+|+++|..+ +..|.....++.++.|.|...++. .+|+.++.|.+|++|.+++|++.. +-..+..++.|+.+++
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIV 85 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhh
Confidence 4566666666666 344555666666666666555553 345555556666666666665552 2233455555555555
Q ss_pred CCCcCcc-cCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCccc-ccCCCCCCEEEcccCCC
Q 005401 146 QENNFTG-DIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQ-LSNLTNLEYLWLSGCNL 223 (698)
Q Consensus 146 ~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~-l~~l~~L~~L~l~~n~l 223 (698)
.+|++.. -+|..+..+..|..||||+|+++ ..|..+..-+++-.|+||+|++. .+|.. +-+++.|-.|+|++|++
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie--tIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE--TIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc--cCCchHHHhhHhHhhhccccchh
Confidence 5555532 24444555555555555555555 34444555555555555555554 33332 23455555555555555
Q ss_pred CCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcce-eccCcccccccccceeccCCCccccccCcc
Q 005401 224 LGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLS-GELPVKWVNMTTLLRFDASMNQLTGTIPNE 302 (698)
Q Consensus 224 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 302 (698)
. .+|..+.++..|++|++++|.+....-..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|++. ..|+.
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 4 33344455555555555555544322222333444444444443221 234444444445555555554444 33443
Q ss_pred cccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCcccee-cCcccCCCCCC
Q 005401 303 LCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGE-IPEGLCEKGSL 380 (698)
Q Consensus 303 ~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~-~~~~~~~~~~L 380 (698)
+..+ +|+.|+|++|+++ .+........+|++|+++.|+++ .+|.++.+++.|+.|.+.+|+++-. +|..++.+..|
T Consensus 241 ly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred HhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 3333 4444444444444 22222233334444444444444 3344444444444444444443321 34444444444
Q ss_pred CEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCc
Q 005401 381 EDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNS 437 (698)
Q Consensus 381 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 437 (698)
+.+..++|.+. .+|..+..|..|+.|.|+.|++. ..|.++.-++.|+.||+..|.
T Consensus 319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 44444444443 34444444444444444444443 334444444444444444443
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=3e-28 Score=231.43 Aligned_cols=445 Identities=22% Similarity=0.218 Sum_probs=249.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCcccccccCC--CCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCc
Q 005401 34 GLSDPTDSLASWDDTRVDTPCHWRGVSCDP--LTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDIS 111 (698)
Q Consensus 34 ~~~~~~~~~~~w~~~~~~~~C~w~g~~c~~--~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 111 (698)
+...|....++-.++. ...|+..|.+-.+ .+...+.++|..|+|+.+.+.+|+.+++||.||||+|.|+.+.|++|.
T Consensus 34 ~~~CP~pC~Cs~~~g~-~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~ 112 (498)
T KOG4237|consen 34 ASACPAPCTCSDVEGG-IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK 112 (498)
T ss_pred cccCCCCcccCCCCCc-eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhh
Confidence 3456666655543322 3457777766655 467788888888888888888888888888888888888888888888
Q ss_pred CCCCCCEEECCC-CCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcE
Q 005401 112 TCRNLTDLNLGS-NLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKE 190 (698)
Q Consensus 112 ~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 190 (698)
++++|..|-+-+ |+|+....+.|.++..|+.|.+.-|++.....++|..+++|..|.+.+|.+..+...+|..+..++.
T Consensus 113 GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 113 GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKT 192 (498)
T ss_pred hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccch
Confidence 888877766655 8888777788888888888888888888777788888888888888888887666667777777777
Q ss_pred eeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCc
Q 005401 191 LRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNS 270 (698)
Q Consensus 191 L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 270 (698)
+.+..|++.. ..+++.+... +. ..|..++.........+.+.+
T Consensus 193 lhlA~np~ic------dCnL~wla~~-~a------------------------------~~~ietsgarc~~p~rl~~~R 235 (498)
T KOG4237|consen 193 LHLAQNPFIC------DCNLPWLADD-LA------------------------------MNPIETSGARCVSPYRLYYKR 235 (498)
T ss_pred HhhhcCcccc------ccccchhhhH-Hh------------------------------hchhhcccceecchHHHHHHH
Confidence 7777776431 1111111110 00 011112222222222233333
Q ss_pred ceeccCcccccc-cccceeccCCCccccccCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCcc
Q 005401 271 LSGELPVKWVNM-TTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSE 349 (698)
Q Consensus 271 ~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 349 (698)
+..+.+..|... ..+..--.+.+...+.. ....|..+++|++|++++|+++++.+.+
T Consensus 236 i~q~~a~kf~c~~esl~s~~~~~d~~d~~c----------------------P~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 236 INQEDARKFLCSLESLPSRLSSEDFPDSIC----------------------PAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred hcccchhhhhhhHHhHHHhhccccCcCCcC----------------------hHHHHhhcccceEeccCCCccchhhhhh
Confidence 322222211110 00000000011111111 1123555666666666666666666666
Q ss_pred ccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCcc-----Cccc--
Q 005401 350 LGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSV-----PEMF-- 422 (698)
Q Consensus 350 l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~-- 422 (698)
|.+...+++|.+..|++.......|.++..|+.|+|.+|+|+...|.+|..+.+|..|++-.|.+.-.- .+++
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhh
Confidence 666666666666666665444455555666666666666666555666666666666665555432100 0000
Q ss_pred ---------cCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccch
Q 005401 423 ---------WGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGS 493 (698)
Q Consensus 423 ---------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 493 (698)
+.--.++.+.+++..+...--. .=+++ ++.-++..| ..++-+.+..=-.|.....+|..
T Consensus 374 ~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~------~~ee~---~~~~s~~cP---~~c~c~~tVvRcSnk~lk~lp~~ 441 (498)
T KOG4237|consen 374 KSVVGNPRCQSPGFVRQIPISDVAFGDFRCG------GPEEL---GCLTSSPCP---PPCTCLDTVVRCSNKLLKLLPRG 441 (498)
T ss_pred CCCCCCCCCCCCchhccccchhccccccccC------Ccccc---CCCCCCCCC---CCcchhhhhHhhcccchhhcCCC
Confidence 0011222333333322211000 00000 000011111 12233333322233333345543
Q ss_pred hccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCC
Q 005401 494 LAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGN 556 (698)
Q Consensus 494 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 556 (698)
+. ...++|++.+|.++ .+|.. .+.+| .+|+++|++.......|.+++.|.+|-||+|
T Consensus 442 iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 442 IP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 32 35667888888888 55554 55667 8888888888666777888888888888876
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=6.9e-23 Score=240.57 Aligned_cols=363 Identities=21% Similarity=0.236 Sum_probs=182.3
Q ss_pred CcEEEEECCCCCCCc--CCCccccCCCCCCEEECCCCCC------cccCCcCCcCCC-CCCEEECCCCCCcccCccccCC
Q 005401 66 QRVTSVNLSQSQLSG--PFPIFFCRLPYLAQLSLYNNYI------NSSLPLDISTCR-NLTDLNLGSNLLVGAIPATLSQ 136 (698)
Q Consensus 66 ~~v~~L~l~~~~l~~--~~~~~~~~l~~L~~L~L~~n~~------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~ 136 (698)
.+|+.+.+....+.. ....+|.++++|+.|.+.++.. ...+|..|..++ +|+.|++.++.+. .+|..| .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 345554444333321 2345677777777777755432 223455555543 4677777766665 445545 3
Q ss_pred CCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEE
Q 005401 137 LKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYL 216 (698)
Q Consensus 137 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L 216 (698)
..+|++|++++|++. .++..+..+++|+.|+++++.....+| .+..+++|++|++++|... ..+|..+.++++|+.|
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDL 686 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCc-cccchhhhccCCCCEE
Confidence 566777777776665 455556666677777776654333444 2556666666666665443 3556666666666666
Q ss_pred EcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccc
Q 005401 217 WLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLT 296 (698)
Q Consensus 217 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 296 (698)
++++|.....+|..+ ++++|+.|++++|.....+|.. ..+|++|++++|.+. .+|..+ .+++|+.|.+.++...
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence 666654444444433 5666666666666544333322 245566666666554 233322 3444444444432211
Q ss_pred cccCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCC
Q 005401 297 GTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCE 376 (698)
Q Consensus 297 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 376 (698)
. +.. .+....+......++|+.|++++|.....+|..++.+++|+.|++++|...+.+|... .
T Consensus 761 ~-l~~---------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~ 823 (1153)
T PLN03210 761 K-LWE---------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N 823 (1153)
T ss_pred h-ccc---------------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C
Confidence 0 000 0000111111223455555555555444455555555555555555553333444333 4
Q ss_pred CCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeee
Q 005401 377 KGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLL 456 (698)
Q Consensus 377 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 456 (698)
+++|+.|++++|.....+|.. .++|+.|++++|.++ .+|..+..+++|+.|++++|.-...++..+..++.|+.++
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 455555555554433233321 234555555555554 3344455555555555554332223333444444555555
Q ss_pred ccCc
Q 005401 457 VSRN 460 (698)
Q Consensus 457 l~~n 460 (698)
+++|
T Consensus 900 l~~C 903 (1153)
T PLN03210 900 FSDC 903 (1153)
T ss_pred cCCC
Confidence 5444
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=1.7e-26 Score=219.60 Aligned_cols=300 Identities=23% Similarity=0.237 Sum_probs=221.0
Q ss_pred cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccc-CccceecCcccCCCCCCCEEec
Q 005401 307 QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSY-NQFSGEIPEGLCEKGSLEDLVL 385 (698)
Q Consensus 307 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~-n~l~~~~~~~~~~~~~L~~L~L 385 (698)
....++|..|+|+...+..|+.+++|+.|||++|+|+.+.|.+|.+++.+.+|-+-+ |+|+....+.|.++.+++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456677777777766677777778888888888888777777777777766655544 7777666667777777777777
Q ss_pred ccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccc------------cccchhhhcCCCCC
Q 005401 386 IYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFT------------GKISKSISGANNLS 453 (698)
Q Consensus 386 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~~~~L~ 453 (698)
.-|++..+..+.|..++++..|.+.+|.+..+....|..+..++.+.+..|.+. ...+..++......
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 777777777777777777777777777777555557777777777777777632 12233333444444
Q ss_pred eeeccCccceeecCccccc-cCCceEEECCCCccccccc-chhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCC
Q 005401 454 SLLVSRNNFSGSIPDEVGL-LSNLVEFSGDGNKFAGQIP-GSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLAN 531 (698)
Q Consensus 454 ~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 531 (698)
...+.+.++....+..+.. ..++.+-..+.+...+.-| .+|..+++|++|+|++|+++++-+.+|.+...+++|+|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 4444444444333333321 2233322333343443443 5799999999999999999999999999999999999999
Q ss_pred CcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhcCCc-ccCCCCCCCCC
Q 005401 532 NRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMYRG-SFLGNPGLCGD 607 (698)
Q Consensus 532 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~~~-~~~~n~~~c~~ 607 (698)
|++.......|.++..|+.|+|.+|+|+..-|.+|..+. |.+|++-.|||.|.|-..|+..|.+. ...||| .|..
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~-~Cq~ 384 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP-RCQS 384 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC-CCCC
Confidence 999987788899999999999999999999999999988 99999999999999999998888753 344555 4653
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.2e-22 Score=238.61 Aligned_cols=339 Identities=22% Similarity=0.264 Sum_probs=248.0
Q ss_pred cEEEEECCCCC------CCcCCCccccCCC-CCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCC
Q 005401 67 RVTSVNLSQSQ------LSGPFPIFFCRLP-YLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKN 139 (698)
Q Consensus 67 ~v~~L~l~~~~------l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 139 (698)
+++.|.+..+. +...+|..|..++ .|+.|++.++.+. .+|..| ...+|++|++++|.+. .++..+..+++
T Consensus 559 ~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~ 635 (1153)
T PLN03210 559 NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTG 635 (1153)
T ss_pred cccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCC
Confidence 45555554332 2334566677765 5999999998774 456666 5789999999999988 56778899999
Q ss_pred CCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcc
Q 005401 140 LKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLS 219 (698)
Q Consensus 140 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~ 219 (698)
|++|+|+++.....+|. +..+++|++|++++|.....+|..+.++++|+.|++++|... ..+|..+ ++++|+.|+++
T Consensus 636 Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L-~~Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL-EILPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred CCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc-CccCCcC-CCCCCCEEeCC
Confidence 99999999875556664 888999999999999877788999999999999999997543 3667655 78999999999
Q ss_pred cCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCcccccc
Q 005401 220 GCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTI 299 (698)
Q Consensus 220 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 299 (698)
+|......|.. .++|+.|++++|.+. .+|..+ .+++|++|.+.++.... ++..+..++.+
T Consensus 713 gc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~-l~~~~~~l~~~-------------- 772 (1153)
T PLN03210 713 GCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEK-LWERVQPLTPL-------------- 772 (1153)
T ss_pred CCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhh-ccccccccchh--------------
Confidence 99766565543 468999999999987 566554 57888888887654321 11111110000
Q ss_pred CcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCC
Q 005401 300 PNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGS 379 (698)
Q Consensus 300 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~ 379 (698)
......+|+.|++++|.....+|..+.++++|+.|++++|..-+.+|..+ .+++|+.|++++|.....+|.. ..+
T Consensus 773 -~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~n 847 (1153)
T PLN03210 773 -MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STN 847 (1153)
T ss_pred -hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccc
Confidence 00011257778888877666778888888888888888875444566555 6788888888887554444432 357
Q ss_pred CCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCc
Q 005401 380 LEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNS 437 (698)
Q Consensus 380 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 437 (698)
|+.|++++|.+. .+|.++..+++|+.|++++|.--..+|.....+++|+.+++++|.
T Consensus 848 L~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 848 ISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 888888888887 567788888889999888854433566667778888888887764
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.4e-20 Score=204.52 Aligned_cols=264 Identities=24% Similarity=0.333 Sum_probs=121.5
Q ss_pred CCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccccccEEEccCccccccCChhccCCCCCCEEEccC
Q 005401 260 SIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFN 339 (698)
Q Consensus 260 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 339 (698)
.-..|+++.+.++ .+|..+. ++++.|++.+|+++. +|... .+|++|++++|+++ .+|.. .++|+.|++++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~lp--~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPALP--PELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCCC--CCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 3455666666665 3454443 356666666666652 33211 14555555555555 23321 24555555555
Q ss_pred CcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccC
Q 005401 340 NKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVP 419 (698)
Q Consensus 340 n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 419 (698)
|.++. +|.. ..+|+.|++++|+++. +|. ..++|+.|++++|++.+ +|.. ..+|+.|++++|.+++ +|
T Consensus 272 N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 272 NPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred Cchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cc
Confidence 55542 2221 1345555555555542 232 12445555555555553 2221 1234455555555543 22
Q ss_pred ccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCC
Q 005401 420 EMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQ 499 (698)
Q Consensus 420 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 499 (698)
.. .++|+.|++++|+++.. |.. ..+|+.|++++|++.+ +|.. ..+|+.|++++|.+++ +|.. .++
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~ 403 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSE 403 (788)
T ss_pred cc---ccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccC
Confidence 11 12455555555555432 211 1344455555555542 3321 2345555555555542 2221 134
Q ss_pred CCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccc
Q 005401 500 LGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLEL 566 (698)
Q Consensus 500 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 566 (698)
|+.|++++|.+++ +|..+ .+|+.|+|++|+++ .+|..+.++++|+.|+|++|++++..|..+
T Consensus 404 L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 404 LKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 5555555555542 33221 23444555555554 445555555555555555555555444443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.9e-20 Score=202.21 Aligned_cols=225 Identities=27% Similarity=0.386 Sum_probs=167.9
Q ss_pred cccceeccCCCccccccCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcc
Q 005401 283 TTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLS 362 (698)
Q Consensus 283 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls 362 (698)
++|+.|++++|+++. +|... .+|+.|++++|.+. .+|.. .++|+.|++++|+++. +|. ..++|+.|+++
T Consensus 242 ~~Lk~LdLs~N~Lts-LP~lp--~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS 310 (788)
T PRK15387 242 PELRTLEVSGNQLTS-LPVLP--PGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVS 310 (788)
T ss_pred CCCcEEEecCCccCc-ccCcc--cccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECC
Confidence 455555555555552 23211 25677777777776 34432 2578899999999984 443 24689999999
Q ss_pred cCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCcccccc
Q 005401 363 YNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKI 442 (698)
Q Consensus 363 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 442 (698)
+|++++ +|.. ..+|+.|++++|.+.+ +|.. ..+|+.|++++|++++ +|.. .++|+.|++++|+++. +
T Consensus 311 ~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-L 377 (788)
T PRK15387 311 DNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-L 377 (788)
T ss_pred CCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-C
Confidence 999985 4432 3468899999999984 4432 2589999999999995 3432 3578899999999985 4
Q ss_pred chhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccC
Q 005401 443 SKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWK 522 (698)
Q Consensus 443 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 522 (698)
|.. ..+|+.|++++|++++ +|.. .++|+.|++++|++.. +|.. ..+|+.|++++|+++ .+|+.+.+++
T Consensus 378 P~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~ 445 (788)
T PRK15387 378 PAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLS 445 (788)
T ss_pred ccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhcc
Confidence 432 3579999999999984 5543 3689999999999985 5643 347889999999998 7899999999
Q ss_pred CCCEEeCCCCcCcccCCcccC
Q 005401 523 NINELNLANNRLSGEIPSEIG 543 (698)
Q Consensus 523 ~L~~L~Ls~N~l~~~~~~~~~ 543 (698)
+|+.|+|++|++++..+..+.
T Consensus 446 ~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 446 SETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred CCCeEECCCCCCCchHHHHHH
Confidence 999999999999988777663
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=8.7e-19 Score=192.17 Aligned_cols=222 Identities=28% Similarity=0.467 Sum_probs=100.4
Q ss_pred cceeccCCCccccccCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccC
Q 005401 285 LLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYN 364 (698)
Q Consensus 285 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n 364 (698)
...|+++++.++ .+|..+.. .++.|++++|.++ .+|..+. ++|+.|++++|+++. +|..+. ..|+.|++++|
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip~-~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIPE-QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSIN 251 (754)
T ss_pred ceEEEeCCCCcC-cCCccccc-CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCC
Confidence 345556665555 23433321 4556666666555 3343332 355666666655552 333322 24555555555
Q ss_pred ccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccch
Q 005401 365 QFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISK 444 (698)
Q Consensus 365 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 444 (698)
.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|+++.. |..+. ++|
T Consensus 252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~lp--~sL---------------- 306 (754)
T PRK15370 252 RIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHLP--SGI---------------- 306 (754)
T ss_pred ccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC-cccch--hhH----------------
Confidence 554 3343332 24555555555555 2333322 3455555555555432 22111 234
Q ss_pred hhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCC
Q 005401 445 SISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNI 524 (698)
Q Consensus 445 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 524 (698)
+.|++++|.++. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|
T Consensus 307 --------~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L 369 (754)
T PRK15370 307 --------THLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTI 369 (754)
T ss_pred --------HHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCc
Confidence 444444444442 22221 1344555555554442 333221 34555555555554 2333332 345
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCc
Q 005401 525 NELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 525 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 559 (698)
++|+|++|+++ .+|..+. ..|+.|++++|+++
T Consensus 370 ~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 370 TTLDVSRNALT-NLPENLP--AALQIMQASRNNLV 401 (754)
T ss_pred CEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc
Confidence 55555555555 3333332 23555555555554
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=3.8e-20 Score=189.54 Aligned_cols=256 Identities=22% Similarity=0.304 Sum_probs=149.0
Q ss_pred ccCCCCCCEEEccCCcCCcC----CCccccCCCCCCEEEcccCccce------ecCcccCCCCCCCEEecccCcCcccCC
Q 005401 326 IARSKNLSELKLFNNKLRGG----LPSELGKYSPLTTLDLSYNQFSG------EIPEGLCEKGSLEDLVLIYNSFSGKIP 395 (698)
Q Consensus 326 ~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~ls~n~l~~------~~~~~~~~~~~L~~L~L~~n~l~~~~~ 395 (698)
+..+..|++|+++++.++.. ++..+...+.+++++++++.+.+ .++..+..+++|+.|++++|.+.+..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 33444455555555555321 22233344455555555554431 122334455566666666666654444
Q ss_pred ccccCCCC---CcEEEccCccCcC----ccCccccCC-CCCCEEEccCCccccc----cchhhhcCCCCCeeeccCccce
Q 005401 396 QSLGKCRS---LRRVRLRHNLLSG----SVPEMFWGL-PHMYLFELADNSFTGK----ISKSISGANNLSSLLVSRNNFS 463 (698)
Q Consensus 396 ~~~~~l~~---L~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~ 463 (698)
..+..+.. |++|++++|.+++ .+...+..+ ++|+.|++++|.+++. ....+..++.|++|++++|.++
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 44443333 6677776666653 122233444 6677777777776632 2334555667777777777776
Q ss_pred ee----cCccccccCCceEEECCCCccccc----ccchhccCCCCCeEEcccCccccccchhhh-c----cCCCCEEeCC
Q 005401 464 GS----IPDEVGLLSNLVEFSGDGNKFAGQ----IPGSLAKLSQLGNLDLSENELSGGIPEGIE-S----WKNINELNLA 530 (698)
Q Consensus 464 ~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~----l~~L~~L~Ls 530 (698)
+. ++..+..+++|+.|++++|.+.+. ++..+..+++|++|++++|.+++.....+. . .+.|++|+++
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence 32 223344456778888887776533 334456678888888888887753333332 2 3688888888
Q ss_pred CCcCcc----cCCcccCCCCCCCEEeCCCCcCccc----Cccccccc-c-cCeEEcccCcC
Q 005401 531 NNRLSG----EIPSEIGNLPVLNYLDLSGNLFSGK----IPLELQNL-R-LNVLNLSNNRL 581 (698)
Q Consensus 531 ~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~~-~-L~~L~ls~N~l 581 (698)
+|.+++ .+...+..+++|+++|+++|.++.. ....+... . ++.+++.+|+|
T Consensus 259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 888862 2334556668888888888888854 33333333 2 77888888775
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=3.5e-18 Score=187.42 Aligned_cols=247 Identities=24% Similarity=0.397 Sum_probs=180.6
Q ss_pred CCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccccccEEEccCccccccCChhccCCCCCCEEEcc
Q 005401 259 KSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLF 338 (698)
Q Consensus 259 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 338 (698)
.+...|+++++.++ .+|..+ .+.++.|++++|.++ .+|..+.. +|+.|++++|.++ .+|..+. ++|+.|+++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~~-nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI--PEQITTLILDNNELK-SLPENLQG-NIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc--ccCCcEEEecCCCCC-cCChhhcc-CCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 35678999998888 456544 358999999999999 45655443 8999999999998 5666554 579999999
Q ss_pred CCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCcc
Q 005401 339 NNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSV 418 (698)
Q Consensus 339 ~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 418 (698)
+|++. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++.. +|..+. ++|+.|++++|.++..
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L- 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL- 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC-
Confidence 99998 4566554 57999999999998 4676554 589999999999985 454443 5799999999999854
Q ss_pred CccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCC
Q 005401 419 PEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLS 498 (698)
Q Consensus 419 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 498 (698)
|..+ .++|+.|++++|.++. +|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.++ .+|..+. .
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~ 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--A 388 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--H
Confidence 4332 2678888888888875 444443 67888888888876 455544 357778888888777 3444443 3
Q ss_pred CCCeEEcccCccccccchhhh----ccCCCCEEeCCCCcCc
Q 005401 499 QLGNLDLSENELSGGIPEGIE----SWKNINELNLANNRLS 535 (698)
Q Consensus 499 ~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~N~l~ 535 (698)
.|+.|++++|+++ .+|+.+. .++.+..|+|.+|.++
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5777777777776 4454433 3466777777777776
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=2.1e-19 Score=183.97 Aligned_cols=234 Identities=22% Similarity=0.257 Sum_probs=142.9
Q ss_pred hccCCCCCCEEEccCCcCCc------CCCccccCCCCCCEEEcccCccceecCcccCCCC---CCCEEecccCcCcc---
Q 005401 325 SIARSKNLSELKLFNNKLRG------GLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKG---SLEDLVLIYNSFSG--- 392 (698)
Q Consensus 325 ~~~~~~~L~~L~l~~n~l~~------~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~---~L~~L~L~~n~l~~--- 392 (698)
.+...+++++++++++.+.+ ..+..+..+++|++|++++|.+.+..+..+..+. +|++|++++|++.+
T Consensus 46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~ 125 (319)
T cd00116 46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL 125 (319)
T ss_pred HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH
Confidence 33444555555555555441 1223344555666666666666543333333333 36666666666652
Q ss_pred -cCCccccCC-CCCcEEEccCccCcCc----cCccccCCCCCCEEEccCCccccc----cchhhhcCCCCCeeeccCccc
Q 005401 393 -KIPQSLGKC-RSLRRVRLRHNLLSGS----VPEMFWGLPHMYLFELADNSFTGK----ISKSISGANNLSSLLVSRNNF 462 (698)
Q Consensus 393 -~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l 462 (698)
.+...+..+ ++|+.|++++|.+++. ....+..+++|+.|++++|.+++. ++..+..+++|+.|++++|.+
T Consensus 126 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 126 RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 122334455 6777777777776632 233455666777777777777632 223344556788888888877
Q ss_pred eee----cCccccccCCceEEECCCCcccccccchhc-----cCCCCCeEEcccCcccc----ccchhhhccCCCCEEeC
Q 005401 463 SGS----IPDEVGLLSNLVEFSGDGNKFAGQIPGSLA-----KLSQLGNLDLSENELSG----GIPEGIESWKNINELNL 529 (698)
Q Consensus 463 ~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L 529 (698)
.+. ++..+..+++|++|++++|.+.+.....+. ..+.|++|++++|.++. .+.+.+..+++|+++++
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence 533 233455677888888888887753222222 24789999999998862 23455666788999999
Q ss_pred CCCcCccc----CCcccCCC-CCCCEEeCCCCcC
Q 005401 530 ANNRLSGE----IPSEIGNL-PVLNYLDLSGNLF 558 (698)
Q Consensus 530 s~N~l~~~----~~~~~~~l-~~L~~L~Ls~N~l 558 (698)
++|.+... ....+... +.|+++|+.+|.+
T Consensus 286 ~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 286 RGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 99999854 44445555 6889999988864
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.6e-18 Score=146.36 Aligned_cols=157 Identities=33% Similarity=0.537 Sum_probs=94.9
Q ss_pred ccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCcc
Q 005401 86 FCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLE 165 (698)
Q Consensus 86 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 165 (698)
+..+.+++.|.||+|+++.. |..++.+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 34556677777777777544 335677777777777777776 55666777777777777766666 5666666666666
Q ss_pred EEEccCcccCC-ccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccC
Q 005401 166 SLSLFNNLLNG-TISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSF 244 (698)
Q Consensus 166 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 244 (698)
+|||.+|++.. ..|..|..+..|+.|+++.|.+. .+|..++++++|+.|.+..|.+. ..|..++.++.|++|.+.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe--~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE--ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc--cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 66666666542 34455555555555566555555 44555555555555555555544 3444455555555555555
Q ss_pred CCCc
Q 005401 245 NGLT 248 (698)
Q Consensus 245 n~l~ 248 (698)
|+++
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 5554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.9e-18 Score=145.94 Aligned_cols=164 Identities=29% Similarity=0.504 Sum_probs=115.0
Q ss_pred cCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcE
Q 005401 111 STCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKE 190 (698)
Q Consensus 111 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 190 (698)
.++.+...|.||+|+++ .+|..+..+.+|+.|++++|+++ .+|.+++.+++|+.|++.-|++. +.|..|+.++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34556666777777776 44555677777777777777777 56666777777777777777765 66677777777777
Q ss_pred eeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCc
Q 005401 191 LRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNS 270 (698)
Q Consensus 191 L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 270 (698)
||+.+|.+....+|..|..++.|+.|+++.|.+. .+|..++++++|+.|.+..|++. .+|..++.+..|++|.+.+|+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 7777777776667777777777777777777765 56666777777777777777766 567777777777777777777
Q ss_pred ceeccCcccc
Q 005401 271 LSGELPVKWV 280 (698)
Q Consensus 271 ~~~~~~~~~~ 280 (698)
++ .+|..++
T Consensus 185 l~-vlppel~ 193 (264)
T KOG0617|consen 185 LT-VLPPELA 193 (264)
T ss_pred ee-ecChhhh
Confidence 76 3443333
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.52 E-value=8.6e-14 Score=152.77 Aligned_cols=150 Identities=27% Similarity=0.499 Sum_probs=115.8
Q ss_pred cCCchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC-----cccccccCC--CC--CcEEEEECCCCCCCcCCCccccC
Q 005401 18 TQSLNQDGLYLRRVKLGLSDPTDSLASWDDTRVDTPC-----HWRGVSCDP--LT--QRVTSVNLSQSQLSGPFPIFFCR 88 (698)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~C-----~w~g~~c~~--~~--~~v~~L~l~~~~l~~~~~~~~~~ 88 (698)
.+..++|..||+++|..+.++.. .+|... +| .|.|+.|.. .. ..|+.|+|+++.+.|.+|..+..
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g~----~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~ 440 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWNGD----PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISK 440 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCCCC----CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhC
Confidence 34567788999999998866532 478642 44 799999953 11 24888899988888888888888
Q ss_pred CCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCC-CCccEE
Q 005401 89 LPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEF-TQLESL 167 (698)
Q Consensus 89 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L 167 (698)
+++|++|+|++|.+.+.+|..+..+++|++|+|++|++.+.+|+.+..+++|++|+|++|++++.+|..+... .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 8888888888888888888888888888888888888888888888888888888888888888887776543 345566
Q ss_pred EccCcc
Q 005401 168 SLFNNL 173 (698)
Q Consensus 168 ~L~~n~ 173 (698)
++.+|.
T Consensus 521 ~~~~N~ 526 (623)
T PLN03150 521 NFTDNA 526 (623)
T ss_pred EecCCc
Confidence 666554
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.50 E-value=8.8e-14 Score=152.69 Aligned_cols=93 Identities=33% Similarity=0.625 Sum_probs=57.7
Q ss_pred ceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCC
Q 005401 476 LVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSG 555 (698)
Q Consensus 476 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 555 (698)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.++++++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CcCcccCcccccc
Q 005401 556 NLFSGKIPLELQN 568 (698)
Q Consensus 556 N~l~~~~p~~~~~ 568 (698)
|.++|.+|..+..
T Consensus 500 N~l~g~iP~~l~~ 512 (623)
T PLN03150 500 NSLSGRVPAALGG 512 (623)
T ss_pred CcccccCChHHhh
Confidence 6666666655543
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=4.6e-13 Score=134.63 Aligned_cols=195 Identities=25% Similarity=0.432 Sum_probs=161.4
Q ss_pred CCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCee
Q 005401 376 EKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSL 455 (698)
Q Consensus 376 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 455 (698)
.+..-...+++.|++. .+|..+..+..|+.+.+..|.+. .+|....++..|++++++.|+++ ..|..+..++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3444566789999998 78888888899999999999998 67888889999999999999998 4455566554 8999
Q ss_pred eccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCc
Q 005401 456 LVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLS 535 (698)
Q Consensus 456 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 535 (698)
.+++|+++ .+|..++....|..||.+.|.+. .+|..+..+.+|+.|.+..|++. .+|+.+.. -.|..||+|+|++.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee
Confidence 99999998 78888888899999999999987 67778899999999999999998 45666664 45899999999999
Q ss_pred ccCCcccCCCCCCCEEeCCCCcCcccCccccccc---c-cCeEEcccCc
Q 005401 536 GEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNL---R-LNVLNLSNNR 580 (698)
Q Consensus 536 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~---~-L~~L~ls~N~ 580 (698)
.+|-.|..|..|++|-|.+|.++ ..|..+-.. . .++|+...++
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 89999999999999999999998 566655432 3 6777777663
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=2.1e-12 Score=122.62 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=77.9
Q ss_pred CCCCCCEEecccCcCcccCCcc----ccCCCCCcEEEccCccCcCccCc-------------cccCCCCCCEEEccCCcc
Q 005401 376 EKGSLEDLVLIYNSFSGKIPQS----LGKCRSLRRVRLRHNLLSGSVPE-------------MFWGLPHMYLFELADNSF 438 (698)
Q Consensus 376 ~~~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~l~~L~~L~l~~n~l 438 (698)
.++.|++|+||+|.+....+.. +..+..|++|.|.+|.+.-.-.. ....-+.|+++...+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 3344555555555444332222 23345555555555554321111 122345666666666666
Q ss_pred ccc----cchhhhcCCCCCeeeccCccceee----cCccccccCCceEEECCCCccccc----ccchhccCCCCCeEEcc
Q 005401 439 TGK----ISKSISGANNLSSLLVSRNNFSGS----IPDEVGLLSNLVEFSGDGNKFAGQ----IPGSLAKLSQLGNLDLS 506 (698)
Q Consensus 439 ~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls 506 (698)
... +...|...+.|+.+.++.|.|... ....+..|+.|+.|||.+|.++.. +...+..+++|++|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 532 223345556666666666665421 112345566666666666655422 23345555566666666
Q ss_pred cCccccccchhh-----hccCCCCEEeCCCCcCc
Q 005401 507 ENELSGGIPEGI-----ESWKNINELNLANNRLS 535 (698)
Q Consensus 507 ~n~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~ 535 (698)
+|.+...-...| ...++|++|.|.+|.|+
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 665554322222 12345555555555554
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=4.8e-12 Score=117.28 Aligned_cols=203 Identities=26% Similarity=0.244 Sum_probs=137.2
Q ss_pred cCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccC---CccccccchhhhcCC
Q 005401 374 LCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELAD---NSFTGKISKSISGAN 450 (698)
Q Consensus 374 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---n~l~~~~~~~~~~~~ 450 (698)
+.-+.+|..+.++.+.-..+. +.-..-|.|+.+.+.+..++.. |.. +|.-...|... .-.+|..........
T Consensus 210 l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~~~-~~l---~pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQDV-PSL---LPETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred hHHhhhhheeeeeccchhhee-ceeecCchhheeeeeccccccc-ccc---cchhhhcCccCCCCCccCCceEEecchHh
Confidence 344556777777665433211 1111235667766665444321 110 01111111111 111222223334456
Q ss_pred CCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCC
Q 005401 451 NLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLA 530 (698)
Q Consensus 451 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 530 (698)
.|+++|||+|.|+ .+.+...-.+.++.|++++|.+.... .++.+++|+.||||+|.++ .+..+-..+.+.++|.|+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 7999999999998 66777888999999999999997443 3888999999999999998 444555678899999999
Q ss_pred CCcCcccCCcccCCCCCCCEEeCCCCcCcccC-cccccccc-cCeEEcccCcCcccCCh
Q 005401 531 NNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKI-PLELQNLR-LNVLNLSNNRLSGELPP 587 (698)
Q Consensus 531 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~-L~~L~ls~N~l~~~~~~ 587 (698)
+|.|.. -..++.+-+|..||+++|+|.... -..++.++ |+++.+.+||+.+.+.-
T Consensus 361 ~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 361 QNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 999973 356788899999999999998632 34467778 99999999999987763
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=9.9e-13 Score=132.28 Aligned_cols=194 Identities=30% Similarity=0.482 Sum_probs=164.0
Q ss_pred CCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEc
Q 005401 354 SPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFEL 433 (698)
Q Consensus 354 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 433 (698)
.--...|++.|++. ++|..++.+..|+.+.+..|.+. .+|..+.++..|++++|+.|+++ ..|..+..|| |+.|-+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 33457889999998 78888999999999999999998 78889999999999999999998 5565666665 899999
Q ss_pred cCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccc
Q 005401 434 ADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGG 513 (698)
Q Consensus 434 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 513 (698)
++|+++ .+|..+.....|..||.+.|.+. .+|..+..+.+|+.|.+..|++. .+|..+.. -.|..||+|.|++. .
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-e
Confidence 999998 45666778899999999999998 77888999999999999999998 45666664 46899999999999 7
Q ss_pred cchhhhccCCCCEEeCCCCcCcccCCcccC---CCCCCCEEeCCCCc
Q 005401 514 IPEGIESWKNINELNLANNRLSGEIPSEIG---NLPVLNYLDLSGNL 557 (698)
Q Consensus 514 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~Ls~N~ 557 (698)
+|-.|..|..|++|-|.+|.++ ..|..+. ...-.++|+..-++
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 8999999999999999999998 5565542 23345788888874
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.14 E-value=4.3e-12 Score=120.59 Aligned_cols=231 Identities=24% Similarity=0.331 Sum_probs=153.9
Q ss_pred CCCCCCEEEcccCcccee----cCcccCCCCCCCEEecccC---cCcccCC-------ccccCCCCCcEEEccCccCcCc
Q 005401 352 KYSPLTTLDLSYNQFSGE----IPEGLCEKGSLEDLVLIYN---SFSGKIP-------QSLGKCRSLRRVRLRHNLLSGS 417 (698)
Q Consensus 352 ~~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~L~~n---~l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~ 417 (698)
.+..++.+++++|.+... +...+...+.|+..++++- +....+| ..+..+++|++|+||+|-+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 344455555555554322 2223334445555555442 1112223 3455678999999999988755
Q ss_pred cCcc----ccCCCCCCEEEccCCccccccchh-------------hhcCCCCCeeeccCccceee----cCccccccCCc
Q 005401 418 VPEM----FWGLPHMYLFELADNSFTGKISKS-------------ISGANNLSSLLVSRNNFSGS----IPDEVGLLSNL 476 (698)
Q Consensus 418 ~~~~----~~~l~~L~~L~l~~n~l~~~~~~~-------------~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L 476 (698)
.+.. +..+..|+.|+|.+|.+....... ...-+.|+++...+|++... +...+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 4443 356889999999999886332222 23457899999999988632 22456677899
Q ss_pred eEEECCCCcccc----cccchhccCCCCCeEEcccCccccc----cchhhhccCCCCEEeCCCCcCcccCCccc-----C
Q 005401 477 VEFSGDGNKFAG----QIPGSLAKLSQLGNLDLSENELSGG----IPEGIESWKNINELNLANNRLSGEIPSEI-----G 543 (698)
Q Consensus 477 ~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~ 543 (698)
+++.+..|.+.. .+...+..|++|++|||.+|.++.. +...++.+++|++|+++.|.+...-...| .
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 999999998742 2345678899999999999988743 44566778899999999998875332222 2
Q ss_pred CCCCCCEEeCCCCcCcccC----cccccccc-cCeEEcccCcCc
Q 005401 544 NLPVLNYLDLSGNLFSGKI----PLELQNLR-LNVLNLSNNRLS 582 (698)
Q Consensus 544 ~l~~L~~L~Ls~N~l~~~~----p~~~~~~~-L~~L~ls~N~l~ 582 (698)
..|+|+.|++.+|.++..- ...+...+ |..|+|++|.+.
T Consensus 268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 4688999999999997622 22233345 899999999994
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=5.9e-11 Score=125.04 Aligned_cols=139 Identities=37% Similarity=0.560 Sum_probs=73.6
Q ss_pred cCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCe
Q 005401 423 WGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGN 502 (698)
Q Consensus 423 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 502 (698)
..+++|+.|++++|++... +......+.|+.|++++|++. .+|.....+..|+++.+++|... ..+..+..+.++..
T Consensus 160 ~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~ 236 (394)
T COG4886 160 RNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSG 236 (394)
T ss_pred hccccccccccCCchhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccc
Confidence 3444444444444444322 111223445555555555554 33433334444555555555422 33344555666666
Q ss_pred EEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCccccc
Q 005401 503 LDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQ 567 (698)
Q Consensus 503 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 567 (698)
+.+.+|++. ..+..+..++++++|++++|.++. ++. ++.+.++++||+++|.+....|....
T Consensus 237 l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 237 LELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred cccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchhhhc
Confidence 666666665 224556666667777777777763 333 66667777777777777655554433
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=1.9e-11 Score=113.39 Aligned_cols=131 Identities=27% Similarity=0.408 Sum_probs=95.9
Q ss_pred CCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEc
Q 005401 426 PHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDL 505 (698)
Q Consensus 426 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 505 (698)
..|+++|++.|.|+. +..+..-.|.++.|++|+|.+... +.+..+++|+.|||++|.++. +.++-..+-+.+.|.|
T Consensus 284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeeh
Confidence 456666777766652 344555567788888888887632 236778888888888887763 3344456778888999
Q ss_pred ccCccccccchhhhccCCCCEEeCCCCcCcccC-CcccCCCCCCCEEeCCCCcCcccC
Q 005401 506 SENELSGGIPEGIESWKNINELNLANNRLSGEI-PSEIGNLPVLNYLDLSGNLFSGKI 562 (698)
Q Consensus 506 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~ 562 (698)
+.|.+... ..++.+-+|..||+++|+|.... -..++++|.|+++.|.+|.+.+..
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 99988643 56778888999999999997532 356899999999999999999643
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=8.8e-11 Score=123.72 Aligned_cols=198 Identities=33% Similarity=0.476 Sum_probs=150.2
Q ss_pred EEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCC-CCCCEEEccCCccccccchhhhcCCCCCeeeccCc
Q 005401 382 DLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGL-PHMYLFELADNSFTGKISKSISGANNLSSLLVSRN 460 (698)
Q Consensus 382 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 460 (698)
.+++..|.+.... .....++.++.+++.+|.++.+ +...... ++|+.|++++|.+... +..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence 3445555442111 2233346677777777777743 3333444 3788888888888743 356788999999999999
Q ss_pred cceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCc
Q 005401 461 NFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPS 540 (698)
Q Consensus 461 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 540 (698)
+++ .+|......+.|+.|++++|++. .+|........|++|.+++|.+. ..+..+.++.++..+.+.+|++. .++.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 998 55655558899999999999998 55555556667999999999755 56677899999999999999998 4578
Q ss_pred ccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChh
Q 005401 541 EIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 541 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~ 588 (698)
.++.++++++|++++|.++...+ +..+. ++.|++++|.+....|..
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence 88999999999999999995544 66666 999999999998777654
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=3.4e-11 Score=107.74 Aligned_cols=86 Identities=28% Similarity=0.319 Sum_probs=22.9
Q ss_pred CCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEE
Q 005401 137 LKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYL 216 (698)
Q Consensus 137 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L 216 (698)
+.+|+.|++++|.++.. + .+..++.|++|++++|.++...+.....+++|++|++++|.+....--..+..+++|++|
T Consensus 41 l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp -TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 34444444444444422 1 244445555555555555432211112345555555555554422222334444555555
Q ss_pred EcccCCCC
Q 005401 217 WLSGCNLL 224 (698)
Q Consensus 217 ~l~~n~l~ 224 (698)
++.+|.+.
T Consensus 119 ~L~~NPv~ 126 (175)
T PF14580_consen 119 SLEGNPVC 126 (175)
T ss_dssp E-TT-GGG
T ss_pred eccCCccc
Confidence 55555443
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.5e-11 Score=120.11 Aligned_cols=209 Identities=18% Similarity=0.171 Sum_probs=133.2
Q ss_pred cCCCCCCEEEcccCccceecC-cccCCCCCCCEEecccCcCccc--CCccccCCCCCcEEEccCccCcCccCc-cccCCC
Q 005401 351 GKYSPLTTLDLSYNQFSGEIP-EGLCEKGSLEDLVLIYNSFSGK--IPQSLGKCRSLRRVRLRHNLLSGSVPE-MFWGLP 426 (698)
Q Consensus 351 ~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~ 426 (698)
.++.+|+++.+.+..+..... .....++.++.|+|+.|-+..- +......+|+|+.|+++.|++...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 356778888888877652221 3456788888888888877632 224445678888888888887643222 122567
Q ss_pred CCCEEEccCCccccc-cchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccc-cchhccCCCCCeEE
Q 005401 427 HMYLFELADNSFTGK-ISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQI-PGSLAKLSQLGNLD 504 (698)
Q Consensus 427 ~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 504 (698)
+|+.|.++.|.++.. +......+|+|+.|+|..|............+..|++|+|++|++.... -...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 788888888887633 2233456778888888887533233334455677778888887776432 13356677777777
Q ss_pred cccCccccc-cchh-----hhccCCCCEEeCCCCcCcccCC--cccCCCCCCCEEeCCCCcCcc
Q 005401 505 LSENELSGG-IPEG-----IESWKNINELNLANNRLSGEIP--SEIGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 505 Ls~n~l~~~-~~~~-----~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~ 560 (698)
++.+.+... .|+. ...+++|+.|++++|++.. .+ ..+..+++|+.|....|.++.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhcccccccc
Confidence 777777643 2222 3456777788888887752 22 334456667777777777764
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4.9e-11 Score=116.61 Aligned_cols=38 Identities=29% Similarity=0.366 Sum_probs=22.3
Q ss_pred cccEEEccCccccc-cCChhccCCCCCCEEEccCCcCCc
Q 005401 307 QLESLNLYENRLEG-TLPESIARSKNLSELKLFNNKLRG 344 (698)
Q Consensus 307 ~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~ 344 (698)
+|++|++..|++.. ..-..+..+++|+.|.+..|.++.
T Consensus 302 kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 56677777776642 111234445677777777777664
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=4.7e-10 Score=82.37 Aligned_cols=61 Identities=41% Similarity=0.630 Sum_probs=43.0
Q ss_pred CCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcC
Q 005401 498 SQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLF 558 (698)
Q Consensus 498 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 558 (698)
++|++|++++|+++...++.|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777766556677777777777777777766666777777777777777764
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=9.5e-10 Score=98.50 Aligned_cols=84 Identities=38% Similarity=0.499 Sum_probs=23.5
Q ss_pred CCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCccc-CCCCCCCEEeCCCCcCcccCc-ccccccc-cCe
Q 005401 497 LSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEI-GNLPVLNYLDLSGNLFSGKIP-LELQNLR-LNV 573 (698)
Q Consensus 497 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p-~~~~~~~-L~~ 573 (698)
+.+|+.|||++|.++.. +.+..++.|++|++++|+|+ .+++.+ ..+++|++|++++|+|..... ..+..++ |+.
T Consensus 41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 44555555555555432 23445555555555555555 232222 234555555555555543211 1222333 556
Q ss_pred EEcccCcCcc
Q 005401 574 LNLSNNRLSG 583 (698)
Q Consensus 574 L~ls~N~l~~ 583 (698)
|++.+||++.
T Consensus 118 L~L~~NPv~~ 127 (175)
T PF14580_consen 118 LSLEGNPVCE 127 (175)
T ss_dssp EE-TT-GGGG
T ss_pred eeccCCcccc
Confidence 6666666543
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=1.3e-09 Score=122.53 Aligned_cols=104 Identities=29% Similarity=0.370 Sum_probs=46.3
Q ss_pred CCCEEECCCCC--CcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEee
Q 005401 115 NLTDLNLGSNL--LVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELR 192 (698)
Q Consensus 115 ~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 192 (698)
+|++|-+..|. +..+.++.|..++.|++|||++|.--+.+|..++.+-+||+|++++..+. ..|..++++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 44444444443 33233333444455555555544433344444444555555555544444 3444444455555555
Q ss_pred ccCCCCCCCCCcccccCCCCCCEEEccc
Q 005401 193 LAYNPFQPGQLPSQLSNLTNLEYLWLSG 220 (698)
Q Consensus 193 ls~n~~~~~~~~~~l~~l~~L~~L~l~~ 220 (698)
+..+... ..+|.....+++|++|.+..
T Consensus 625 l~~~~~l-~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 625 LEVTGRL-ESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccccccc-ccccchhhhcccccEEEeec
Confidence 4444322 12233333344555554433
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=8.9e-10 Score=123.74 Aligned_cols=202 Identities=21% Similarity=0.291 Sum_probs=133.5
Q ss_pred CcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCC--CcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEE
Q 005401 66 QRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNY--INSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSL 143 (698)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~--~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 143 (698)
..++.+.+.++.+...... ...+.|++|-+..|. +.......|..++.|++|||++|.-.+.+|..++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 3566666666665533211 234478888888885 555555568889999999999888777889999999999999
Q ss_pred ECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCC-CCCCcccccCCCCCCEEEcccCC
Q 005401 144 ELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQ-PGQLPSQLSNLTNLEYLWLSGCN 222 (698)
Q Consensus 144 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~-~~~~~~~l~~l~~L~~L~l~~n~ 222 (698)
+++++.+. .+|..+.++..|.+|++..+.-...++.....+.+||+|.+...... ....-..+.++.+|+.+......
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 99999888 78888999999999999988766566777777899999988665422 11223344556666666554333
Q ss_pred CCCcCCccccCCCCCC----EEEccCCCCcccCCccccCCCCCceeeccCCccee
Q 005401 223 LLGEIPESLTRLTKLK----NLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSG 273 (698)
Q Consensus 223 l~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 273 (698)
. .+...+..++.|. .+.+..+... ..+..+..+.+|+.|.+.++.+..
T Consensus 680 ~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 680 V--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred h--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence 2 1111222333332 2222222222 345567778888888888887653
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=1.1e-09 Score=80.33 Aligned_cols=59 Identities=37% Similarity=0.481 Sum_probs=31.6
Q ss_pred CCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCc
Q 005401 91 YLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENN 149 (698)
Q Consensus 91 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 149 (698)
+|++|++++|+++.+.+..|.++++|++|++++|.+..+.+.+|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555555555555555555555555554445555555555555555554
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=4.8e-10 Score=118.10 Aligned_cols=224 Identities=29% Similarity=0.312 Sum_probs=102.5
Q ss_pred ccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCc
Q 005401 326 IARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLR 405 (698)
Q Consensus 326 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 405 (698)
+..+++|..|++.+|++..+.. .+..+++|++|++++|.|+... .+..+..|+.|++++|.+... ..+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhh
Confidence 3444555566666665553321 1444555556666655554332 233344455555555555422 2233345555
Q ss_pred EEEccCccCcCccC-ccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCC
Q 005401 406 RVRLRHNLLSGSVP-EMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGN 484 (698)
Q Consensus 406 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 484 (698)
.+++++|.+....+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--------------------------~~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--------------------------EGLDLLKKLVLLSLLDN 218 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--------------------------cchHHHHHHHHhhcccc
Confidence 55555555553332 1 23344444444444444322 12222233333344444
Q ss_pred cccccccchhccCC--CCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCccc-
Q 005401 485 KFAGQIPGSLAKLS--QLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGK- 561 (698)
Q Consensus 485 ~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~- 561 (698)
.++...+ +..+. .|+.+++++|++. ..++.+..+..+..|+++.|++... ..+...+.+..+....|.+...
T Consensus 219 ~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 293 (414)
T KOG0531|consen 219 KISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSE 293 (414)
T ss_pred cceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchh
Confidence 4432221 11112 2556666666655 2224455566666666666666532 2233445555556666665531
Q ss_pred --Cccc-cccc-ccCeEEcccCcCcccCC
Q 005401 562 --IPLE-LQNL-RLNVLNLSNNRLSGELP 586 (698)
Q Consensus 562 --~p~~-~~~~-~L~~L~ls~N~l~~~~~ 586 (698)
.... .... .+..+.+.+|+.....+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 294 AISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hhhccccccccccccccccccCccccccc
Confidence 1110 1111 25566666666655443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=7.8e-10 Score=116.48 Aligned_cols=196 Identities=28% Similarity=0.269 Sum_probs=126.4
Q ss_pred cCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCC
Q 005401 374 LCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLS 453 (698)
Q Consensus 374 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 453 (698)
+..+.+|+.+++.+|.+..+. ..+..+++|++|++++|.|+.+.+ +..++.|+.|++.+|.+.... .+..+..|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDIS--GLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhcc--CCccchhhh
Confidence 334444555555555554221 114455666666666666654432 334455666667776665332 233467888
Q ss_pred eeeccCccceeecC-ccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCC--CCEEeCC
Q 005401 454 SLLVSRNNFSGSIP-DEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKN--INELNLA 530 (698)
Q Consensus 454 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~Ls 530 (698)
.+++++|++...-+ . ...+.+++.+++.+|.+..... +..+..+..+++..|.++..- .+..+.. |++++++
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLS 240 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcc
Confidence 88888888874443 2 5778899999999998874432 445556666799999987542 2333333 8999999
Q ss_pred CCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCc
Q 005401 531 NNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLS 582 (698)
Q Consensus 531 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~ 582 (698)
+|++. ..+..+..+..+..||+++|++...-. +.... +..+....|++.
T Consensus 241 ~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 241 GNRIS-RSPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLA 290 (414)
T ss_pred cCccc-cccccccccccccccchhhcccccccc--ccccchHHHhccCcchhc
Confidence 99998 555678888999999999999986332 22222 566677777765
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.75 E-value=2.8e-10 Score=117.94 Aligned_cols=130 Identities=35% Similarity=0.317 Sum_probs=103.1
Q ss_pred CCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeC
Q 005401 450 NNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNL 529 (698)
Q Consensus 450 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 529 (698)
..|...+.+.|.+. .....+.-++.|+.|+|++|+++... .+..|+.|++|||++|.+.....-...++. |+.|+|
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 35777888889887 56677888999999999999998654 688999999999999999854444555665 999999
Q ss_pred CCCcCcccCCcccCCCCCCCEEeCCCCcCcccCc-ccccccc-cCeEEcccCcCcccC
Q 005401 530 ANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIP-LELQNLR-LNVLNLSNNRLSGEL 585 (698)
Q Consensus 530 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~~-L~~L~ls~N~l~~~~ 585 (698)
++|.++.. ..+.+|.+|+.||+++|-|.+.-. ..+..+. |+.|.|.|||+.|..
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 99999833 457899999999999999986221 1122233 899999999998854
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.40 E-value=1.2e-08 Score=83.94 Aligned_cols=135 Identities=24% Similarity=0.210 Sum_probs=92.4
Q ss_pred CCCeeeccCccceeecCc---cccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEE
Q 005401 451 NLSSLLVSRNNFSGSIPD---EVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINEL 527 (698)
Q Consensus 451 ~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 527 (698)
.+..++|+.|++. .+++ .+.....|+..++++|.+....+..-...+..+.|+|++|.++ .+|+.+..++.|+.|
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 3455667777654 3333 3344555667788888777544444445568888888888888 667778888889999
Q ss_pred eCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccccCeEEcccCcCcccCChh
Q 005401 528 NLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLRLNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 528 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~~~~ 588 (698)
+++.|.+. ..|..+..|.++-+||.-+|.+....-+.|..-.....++.+++|.+.++..
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCccc
Confidence 99999888 6777777788888888888888743333222222344566778888888754
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=8.8e-09 Score=107.15 Aligned_cols=127 Identities=28% Similarity=0.330 Sum_probs=82.5
Q ss_pred cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecc
Q 005401 307 QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLI 386 (698)
Q Consensus 307 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~ 386 (698)
.|.+.+.+.|.+. .....+.-++.++.|+|++|+++.. +.+..++.|++|||++|.+....--....+. |+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 5666677777766 4455666667778888888877743 2677777788888888877633222333443 7778888
Q ss_pred cCcCcccCCccccCCCCCcEEEccCccCcCcc-CccccCCCCCCEEEccCCccc
Q 005401 387 YNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSV-PEMFWGLPHMYLFELADNSFT 439 (698)
Q Consensus 387 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~ 439 (698)
+|.++.. ..+.++++|+.||+++|-+.+-. -..++.+..|+.|+|.+|.+-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8777643 34667777788888887776421 223445566777777777663
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.24 E-value=2.5e-07 Score=85.39 Aligned_cols=112 Identities=15% Similarity=0.120 Sum_probs=56.8
Q ss_pred CCCCCCEEEccCCccccccch----hhhcCCCCCeeeccCccceeecC-----ccccccCCceEEECCCCccccc----c
Q 005401 424 GLPHMYLFELADNSFTGKISK----SISGANNLSSLLVSRNNFSGSIP-----DEVGLLSNLVEFSGDGNKFAGQ----I 490 (698)
Q Consensus 424 ~l~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~----~ 490 (698)
+-|.|++.....|++...... .+..-..|+.+.+..|.|...-. ..+..+.+|+.||+.+|.++.. +
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 346677777777776532211 12222467777777776652211 1224456666666666666522 2
Q ss_pred cchhccCCCCCeEEcccCccccccchhh------hccCCCCEEeCCCCcCc
Q 005401 491 PGSLAKLSQLGNLDLSENELSGGIPEGI------ESWKNINELNLANNRLS 535 (698)
Q Consensus 491 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~Ls~N~l~ 535 (698)
..++..++.|+.|.+..|-++..-...+ ...++|+.|-..+|.+.
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 3344555556666666665553322221 12344555555555444
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6e-08 Score=90.57 Aligned_cols=177 Identities=22% Similarity=0.253 Sum_probs=91.1
Q ss_pred CCCEEEcccCcccee-cCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEc
Q 005401 355 PLTTLDLSYNQFSGE-IPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFEL 433 (698)
Q Consensus 355 ~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 433 (698)
.|+++|+++..++.. .-..+..|..|+.|.+.++++...+...+..-..|+.|+++.+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-------------------- 245 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-------------------- 245 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc--------------------
Confidence 466666666555321 11223344555555555555554444444444555555555431
Q ss_pred cCCccccc-cchhhhcCCCCCeeeccCccceeecCcc-c-cccCCceEEECCCCccc---ccccchhccCCCCCeEEccc
Q 005401 434 ADNSFTGK-ISKSISGANNLSSLLVSRNNFSGSIPDE-V-GLLSNLVEFSGDGNKFA---GQIPGSLAKLSQLGNLDLSE 507 (698)
Q Consensus 434 ~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~-~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~ 507 (698)
.++.. ....+.+|+.|..|+++.|.+....... + .--++|+.|+++++.-. ..+.-.-..+++|..||||+
T Consensus 246 ---G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 246 ---GFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred ---ccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence 11111 1223445555666666655544222111 1 11345556666654221 11112235678888888887
Q ss_pred Cc-cccccchhhhccCCCCEEeCCCCcCcccCCcc---cCCCCCCCEEeCCCC
Q 005401 508 NE-LSGGIPEGIESWKNINELNLANNRLSGEIPSE---IGNLPVLNYLDLSGN 556 (698)
Q Consensus 508 n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~Ls~N 556 (698)
|. ++...-..|-.++.|++|.|++|.. .+|.. +...|+|.+||+.++
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 65 3333334556677888888888765 35544 456678888887654
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.4e-08 Score=94.75 Aligned_cols=202 Identities=24% Similarity=0.277 Sum_probs=138.0
Q ss_pred CcEEEEECCCCCCCcC-CCccccCCC-CCCEEECCCCCCccc-CCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCE
Q 005401 66 QRVTSVNLSQSQLSGP-FPIFFCRLP-YLAQLSLYNNYINSS-LPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKS 142 (698)
Q Consensus 66 ~~v~~L~l~~~~l~~~-~~~~~~~l~-~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 142 (698)
..|.++.+....+..+ +...+.-++ .|++||||...++.. ...-++.|.+|+.|.|.++++...+...+..-.+|+.
T Consensus 159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR 238 (419)
T ss_pred CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence 4677888776555443 334444443 589999998877543 3334678899999999999999888888889999999
Q ss_pred EECCCCc-Cccc-CCcCccCCCCccEEEccCcccCCccCcc-ccC-cCCCcEeeccCCCCC--CCCCcccccCCCCCCEE
Q 005401 143 LELQENN-FTGD-IPASFGEFTQLESLSLFNNLLNGTISSS-LGN-ISTLKELRLAYNPFQ--PGQLPSQLSNLTNLEYL 216 (698)
Q Consensus 143 L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~-l~~L~~L~ls~n~~~--~~~~~~~l~~l~~L~~L 216 (698)
|+|+.+. ++.. ..--+.+|+.|..|+++.|.+....-.. +.+ -++|..|++++..-. ...+..-..++++|.+|
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 9998865 2211 1112578899999999998876433221 111 257888888887422 11222234578899999
Q ss_pred EcccCC-CCCcCCccccCCCCCCEEEccCCCCcccCCcc---ccCCCCCceeeccCC
Q 005401 217 WLSGCN-LLGEIPESLTRLTKLKNLDLSFNGLTGSIPSS---ITEMKSIEQIELFKN 269 (698)
Q Consensus 217 ~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n 269 (698)
||++|. ++......|..++.|++|.++.|.. .+|.. +...++|.+|++.++
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 998874 3444445677889999999988863 34543 456688999988775
No 49
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.19 E-value=2.1e-06 Score=57.34 Aligned_cols=41 Identities=44% Similarity=0.890 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhcCC-CCCCCCCCCCCCCCCCCCcccccccC
Q 005401 22 NQDGLYLRRVKLGLS-DPTDSLASWDDTRVDTPCHWRGVSCD 62 (698)
Q Consensus 22 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~~~C~w~g~~c~ 62 (698)
++|+++|++||.++. +|.+.+.+|+.....+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 578999999999998 57788999998632379999999995
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.17 E-value=2.4e-07 Score=85.40 Aligned_cols=113 Identities=19% Similarity=0.115 Sum_probs=55.7
Q ss_pred cCCCcEeeccCCCCCCCCCcc---cccCCCCCCEEEcccCCCCCcC-----CccccCCCCCCEEEccCCCCcccC----C
Q 005401 185 ISTLKELRLAYNPFQPGQLPS---QLSNLTNLEYLWLSGCNLLGEI-----PESLTRLTKLKNLDLSFNGLTGSI----P 252 (698)
Q Consensus 185 l~~L~~L~ls~n~~~~~~~~~---~l~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~~----~ 252 (698)
-|.|+......|++..+..-. .+..-..|+++.+..|.|.... ...+..+.+|+.||+.+|-++... .
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 355666666666655322110 1111235666666666554221 112334566666777666665322 2
Q ss_pred ccccCCCCCceeeccCCcceeccCccc------ccccccceeccCCCcccc
Q 005401 253 SSITEMKSIEQIELFKNSLSGELPVKW------VNMTTLLRFDASMNQLTG 297 (698)
Q Consensus 253 ~~~~~l~~L~~L~l~~n~~~~~~~~~~------~~~~~L~~L~l~~n~l~~ 297 (698)
..++..+.|++|.+.+|-++..-...+ ...++|+.|...+|.+.+
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 233445556666666665543222211 134566666666665544
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=2.2e-07 Score=76.61 Aligned_cols=116 Identities=20% Similarity=0.295 Sum_probs=69.3
Q ss_pred cCCCCCeeeccCccceeecCccc-cccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCE
Q 005401 448 GANNLSSLLVSRNNFSGSIPDEV-GLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINE 526 (698)
Q Consensus 448 ~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 526 (698)
....|+..+|++|.+. ..|..| ...+.++.|++++|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.+|-.
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 3345555666666665 333333 33446666777777666 45656777777777777777777 55666666777777
Q ss_pred EeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCccccc
Q 005401 527 LNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQ 567 (698)
Q Consensus 527 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 567 (698)
|+..+|.+. .+|-.+-.-......++.++.+.+.-+..++
T Consensus 128 Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 128 LDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred hcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence 777777776 4443332222333445566666665554433
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=9.9e-07 Score=82.59 Aligned_cols=204 Identities=18% Similarity=0.182 Sum_probs=111.0
Q ss_pred CCCCCCEEECCCCCCccc--CCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCccc-CCcCccCCCCc
Q 005401 88 RLPYLAQLSLYNNYINSS--LPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGD-IPASFGEFTQL 164 (698)
Q Consensus 88 ~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L 164 (698)
..++++++||.+|.|++. +...+.++|.|++|+|+.|.+...+...=....+|++|.|.+..+.-. ....+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 456777777777777653 333456777777777777776643222113456777777777655421 22334567777
Q ss_pred cEEEccCcccCCc--cCccccCc-CCCcEeeccCCCCCCC-CCcccccCCCCCCEEEcccCCCCCcCC-ccccCCCCCCE
Q 005401 165 ESLSLFNNLLNGT--ISSSLGNI-STLKELRLAYNPFQPG-QLPSQLSNLTNLEYLWLSGCNLLGEIP-ESLTRLTKLKN 239 (698)
Q Consensus 165 ~~L~L~~n~l~~~--~~~~~~~l-~~L~~L~ls~n~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~ 239 (698)
+.|.++.|.+... ........ +.+++|.+-.|..... .+..--.-++++..+.+..|.+..... ..+..++.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 7777777744311 11111111 2344444444432100 000111234666777777776653322 23555666777
Q ss_pred EEccCCCCccc-CCccccCCCCCceeeccCCcceeccCc------ccccccccceeccC
Q 005401 240 LDLSFNGLTGS-IPSSITEMKSIEQIELFKNSLSGELPV------KWVNMTTLLRFDAS 291 (698)
Q Consensus 240 L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~------~~~~~~~L~~L~l~ 291 (698)
|+++.+++... --+.+..++.|..|.+.++.+...... -++.+++++.|+-+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 77777776532 123466777777777777766533221 24567777777654
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=4.1e-06 Score=55.97 Aligned_cols=36 Identities=47% Similarity=0.831 Sum_probs=16.8
Q ss_pred CCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCc
Q 005401 523 NINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 523 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 559 (698)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3445555555555 33334455555555555555554
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1e-05 Score=54.01 Aligned_cols=38 Identities=37% Similarity=0.653 Sum_probs=26.3
Q ss_pred CCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcc
Q 005401 498 SQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSG 536 (698)
Q Consensus 498 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 536 (698)
++|++|++++|+++ .+|..++++++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 46777888888777 455567778888888888887773
No 55
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.88 E-value=5.6e-06 Score=84.72 Aligned_cols=33 Identities=27% Similarity=0.583 Sum_probs=30.9
Q ss_pred ccccccchHH-HHHhCCCcCCeEecCCCceEEeC
Q 005401 666 SFHKIGFSEF-EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 666 ~~~~~~~~~~-~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
....|+|+|+ +||++|+++++||+||||.||||
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG 94 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKG 94 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEE
Confidence 4567999999 99999999999999999999997
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=3.6e-06 Score=78.93 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=34.3
Q ss_pred CCCCCeEEcccCcccccc-chhhhccCCCCEEeCCCCcCccc-CCcccCCCCCCCEEeCCCCcCcc
Q 005401 497 LSQLGNLDLSENELSGGI-PEGIESWKNINELNLANNRLSGE-IPSEIGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 497 l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~ 560 (698)
++++..+-+..|.+.... .+.+..++.+.-|+|+.|+|..- .-+.+.+++.|..|.+++|.+..
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 345555556566554322 12344455555666666666531 12445566666666666666654
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.85 E-value=7.3e-05 Score=64.68 Aligned_cols=14 Identities=21% Similarity=0.686 Sum_probs=4.7
Q ss_pred cccCCCCCcEEEcc
Q 005401 397 SLGKCRSLRRVRLR 410 (698)
Q Consensus 397 ~~~~l~~L~~L~l~ 410 (698)
.|.++++|+.+.+.
T Consensus 30 ~F~~~~~l~~i~~~ 43 (129)
T PF13306_consen 30 AFSNCTSLKSINFP 43 (129)
T ss_dssp TTTT-TT-SEEEES
T ss_pred hccccccccccccc
Confidence 33334334444443
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.82 E-value=3.8e-05 Score=68.26 Aligned_cols=59 Identities=27% Similarity=0.283 Sum_probs=26.8
Q ss_pred CCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccC
Q 005401 115 NLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLN 175 (698)
Q Consensus 115 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 175 (698)
+...+||+.|.+... +.|..++.|.+|.+.+|.|+.+.|.--..+++|+.|.|.+|.+.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 344555555554321 23444455555555555555443333333344444444444443
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.80 E-value=8.4e-05 Score=64.32 Aligned_cols=106 Identities=13% Similarity=0.199 Sum_probs=42.2
Q ss_pred ccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCC
Q 005401 396 QSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSN 475 (698)
Q Consensus 396 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 475 (698)
..|.++++|+.+.+.. .+..+....|.++++|+.+.+..+ +.......|.+++.++.+.+.+ .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4455666666666653 344455555666666666666553 4444445555555555555543 222223334444444
Q ss_pred ceEEECCCCcccccccchhccCCCCCeEEcc
Q 005401 476 LVEFSGDGNKFAGQIPGSLAKLSQLGNLDLS 506 (698)
Q Consensus 476 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 506 (698)
|+.+++..+ +.......|.++ .|+.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 444444432 222223334443 44444443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=1.2e-05 Score=88.50 Aligned_cols=181 Identities=23% Similarity=0.241 Sum_probs=101.3
Q ss_pred CcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcC-------------C--cCCCCCCEEECCCCCCc-cc
Q 005401 66 QRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLD-------------I--STCRNLTDLNLGSNLLV-GA 129 (698)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-------------~--~~l~~L~~L~Ls~n~l~-~~ 129 (698)
-+++.+++.+.......-..+.... |++|.|.+-......-.. + ..-.+|++||+++.... ..
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred heeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 4677888877766655444455554 777777653221110000 0 01246788888775432 11
Q ss_pred Ccccc-CCCCCCCEEECCCCcCccc-CCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccc
Q 005401 130 IPATL-SQLKNLKSLELQENNFTGD-IPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQL 207 (698)
Q Consensus 130 ~~~~~-~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l 207 (698)
.|..+ ..+|+|+.|.+++-.+... ......++++|..||+|+..++.. ..++++++|+.|.+.+-.+.....-..+
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 22222 3467788887776544321 123345677777777777777644 5566777777777766666533333456
Q ss_pred cCCCCCCEEEcccCCCCCcC------CccccCCCCCCEEEccCCCCcc
Q 005401 208 SNLTNLEYLWLSGCNLLGEI------PESLTRLTKLKNLDLSFNGLTG 249 (698)
Q Consensus 208 ~~l~~L~~L~l~~n~l~~~~------~~~l~~l~~L~~L~l~~n~l~~ 249 (698)
.++++|+.||++........ -+.-..+|+|+.||.+++.+..
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 67777777777765433221 0112335666666666665543
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.70 E-value=7.9e-05 Score=66.31 Aligned_cols=105 Identities=22% Similarity=0.253 Sum_probs=64.2
Q ss_pred CCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccC-CccccCCCCCcEEEc
Q 005401 331 NLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKI-PQSLGKCRSLRRVRL 409 (698)
Q Consensus 331 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l 409 (698)
....+|+++|.+... ..|..++.|.+|.+++|+|+.+-|.--.-+++|..|.+.+|++.... -..+..|++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 445666666666532 34556666777777777776655554445566777777777665321 134566777777777
Q ss_pred cCccCcCcc---CccccCCCCCCEEEccCCc
Q 005401 410 RHNLLSGSV---PEMFWGLPHMYLFELADNS 437 (698)
Q Consensus 410 ~~n~l~~~~---~~~~~~l~~L~~L~l~~n~ 437 (698)
-+|.++..- ...+..+|+|++||+..-.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 777766422 2245667777777776543
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.61 E-value=0.00015 Score=73.56 Aligned_cols=136 Identities=15% Similarity=0.223 Sum_probs=83.4
Q ss_pred ccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCc-cceeecCccccccCCc
Q 005401 398 LGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRN-NFSGSIPDEVGLLSNL 476 (698)
Q Consensus 398 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L 476 (698)
+..+.+++.|++++|.++.. |. -.++|+.|.++++.-...+|..+. ++|+.|++++| .+. .+| .+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------ccc
Confidence 44578899999999987743 41 224689999987554445555443 57889999888 443 344 356
Q ss_pred eEEECCCCccc--ccccchhccCCCCCeEEcccCc-cc-cccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEe
Q 005401 477 VEFSGDGNKFA--GQIPGSLAKLSQLGNLDLSENE-LS-GGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLD 552 (698)
Q Consensus 477 ~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~-l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 552 (698)
+.|++..+... +.+| ++|+.|.+.+++ .. ..+|..+. ++|++|++++|... ..|..+. .+|++|+
T Consensus 115 e~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 115 RSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred ceEEeCCCCCcccccCc------chHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 77777665543 1223 356677775432 11 01111111 57888888888766 4454444 4788888
Q ss_pred CCCCc
Q 005401 553 LSGNL 557 (698)
Q Consensus 553 Ls~N~ 557 (698)
++.|.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 87764
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=0.00016 Score=73.31 Aligned_cols=138 Identities=13% Similarity=0.162 Sum_probs=90.3
Q ss_pred cCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCC-ccccccchhhhcCCCC
Q 005401 374 LCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADN-SFTGKISKSISGANNL 452 (698)
Q Consensus 374 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L 452 (698)
+..+..++.|++++|.+. .+|. + ..+|+.|.++++.--...|..+ .++|+.|++++| .+. .+| +.|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------ccc
Confidence 445688999999999887 3452 2 3479999998854434556544 368999999998 443 334 358
Q ss_pred CeeeccCccceeecCccccccCCceEEECCCCccc--ccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCC
Q 005401 453 SSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFA--GQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLA 530 (698)
Q Consensus 453 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 530 (698)
+.|+++.+.... ++ .-.++|+.|.+.+++.. ..+|.. -.++|++|++++|... ..|+.+. .+|+.|+++
T Consensus 115 e~L~L~~n~~~~-L~---~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 115 RSLEIKGSATDS-IK---NVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred ceEEeCCCCCcc-cc---cCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 888887765431 11 12246778887543311 111211 1268999999999876 4555555 689999998
Q ss_pred CCc
Q 005401 531 NNR 533 (698)
Q Consensus 531 ~N~ 533 (698)
.|.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 874
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.21 E-value=8.7e-05 Score=81.93 Aligned_cols=106 Identities=23% Similarity=0.317 Sum_probs=48.6
Q ss_pred CCCCEEECCCCcCcc-cCCcCc-cCCCCccEEEccCcccCCc-cCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCC
Q 005401 138 KNLKSLELQENNFTG-DIPASF-GEFTQLESLSLFNNLLNGT-ISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLE 214 (698)
Q Consensus 138 ~~L~~L~L~~n~l~~-~~~~~~-~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~ 214 (698)
.+|++|++++..... .-+..+ .-+|+|+.|.+++-.+... ......++|+|+.||+|+..++ .+ ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~--nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS--NL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc--Cc-HHHhccccHH
Confidence 356666666543221 111112 2345666666655443211 1122345556666666665555 11 3455555555
Q ss_pred EEEcccCCCCC-cCCccccCCCCCCEEEccCCC
Q 005401 215 YLWLSGCNLLG-EIPESLTRLTKLKNLDLSFNG 246 (698)
Q Consensus 215 ~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~ 246 (698)
+|.+.+-.+.. ..-..+.++++|+.||+|...
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 55555443332 111234455555555555544
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.03 E-value=0.00038 Score=64.96 Aligned_cols=85 Identities=26% Similarity=0.338 Sum_probs=42.4
Q ss_pred cCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCC--CCcccCccccCCCCCCCEEECCCCcCcccCCcC---ccCC
Q 005401 87 CRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSN--LLVGAIPATLSQLKNLKSLELQENNFTGDIPAS---FGEF 161 (698)
Q Consensus 87 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l 161 (698)
..+..|+.|++.+..++.. ..|..+++|++|++|.| ++.+.++.....+++|+++++++|++.. ++. +..+
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l 115 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKEL 115 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhh
Confidence 3344444555554444322 12445566666666666 4444444444455666666666666552 111 3344
Q ss_pred CCccEEEccCcccC
Q 005401 162 TQLESLSLFNNLLN 175 (698)
Q Consensus 162 ~~L~~L~L~~n~l~ 175 (698)
.+|..|++.+|..+
T Consensus 116 ~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVT 129 (260)
T ss_pred cchhhhhcccCCcc
Confidence 45555555555443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.89 E-value=0.00054 Score=63.97 Aligned_cols=64 Identities=23% Similarity=0.274 Sum_probs=26.6
Q ss_pred CcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCC--cCcccCCcCccCCCCccEEEccCcccC
Q 005401 110 ISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQEN--NFTGDIPASFGEFTQLESLSLFNNLLN 175 (698)
Q Consensus 110 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~ 175 (698)
...+..|+.|.+.+..++.. ..|-.+++|++|.++.| .+.+-++.....+++|++|++++|++.
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33444455555444443321 22334445555555555 333222222333344444444444443
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.73 E-value=2.9e-05 Score=76.62 Aligned_cols=82 Identities=20% Similarity=0.124 Sum_probs=39.4
Q ss_pred CCCEEECCCCCCcccCC--cCCcCCCCCCEEECCCCCC-cccC-ccccCCCCCCCEEECCCCc-CcccCCc-CccCCCCc
Q 005401 91 YLAQLSLYNNYINSSLP--LDISTCRNLTDLNLGSNLL-VGAI-PATLSQLKNLKSLELQENN-FTGDIPA-SFGEFTQL 164 (698)
Q Consensus 91 ~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~Ls~n~l-~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L 164 (698)
.|+.|.++++.-.+.-+ ..-.+++++++|++.++.. +... -..-..+++|++|++..|. ++...-. .-..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 57777777764322211 1234677777777766652 1111 1111346666666666532 3322111 12344555
Q ss_pred cEEEccCc
Q 005401 165 ESLSLFNN 172 (698)
Q Consensus 165 ~~L~L~~n 172 (698)
++|+++.+
T Consensus 219 ~~lNlSwc 226 (483)
T KOG4341|consen 219 KYLNLSWC 226 (483)
T ss_pred HHhhhccC
Confidence 55555544
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=5.8e-05 Score=70.37 Aligned_cols=84 Identities=30% Similarity=0.373 Sum_probs=57.4
Q ss_pred cEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCc-cccCCCCCCCEEEC
Q 005401 67 RVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIP-ATLSQLKNLKSLEL 145 (698)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L 145 (698)
.|..|++-++++.++ ....+++.|++|.||-|+|+...| |..|++|++|+|..|.|..... .-+.++++|+.|-|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 566777777776654 245678888888888888876544 6788888888888887764322 23456777777777
Q ss_pred CCCcCcccC
Q 005401 146 QENNFTGDI 154 (698)
Q Consensus 146 ~~n~l~~~~ 154 (698)
..|.-.+..
T Consensus 96 ~ENPCc~~a 104 (388)
T KOG2123|consen 96 DENPCCGEA 104 (388)
T ss_pred ccCCccccc
Confidence 776655443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=8.8e-05 Score=69.21 Aligned_cols=65 Identities=32% Similarity=0.340 Sum_probs=32.2
Q ss_pred cCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCC
Q 005401 159 GEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLG 225 (698)
Q Consensus 159 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 225 (698)
.+++.|++|.|+-|+|++.. .+..|++|++|+|..|.|.+..--..+.++++|+.|+|..|.-.+
T Consensus 38 ~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred HhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence 34444555555555444322 244555555555555555432223345555666666666555443
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.60 E-value=4.4e-05 Score=75.40 Aligned_cols=83 Identities=24% Similarity=0.223 Sum_probs=36.0
Q ss_pred CCCEEECCCCcCcccCC--cCccCCCCccEEEccCcccC-CccC-ccccCcCCCcEeeccCC-CCCCCCCcccccCCCCC
Q 005401 139 NLKSLELQENNFTGDIP--ASFGEFTQLESLSLFNNLLN-GTIS-SSLGNISTLKELRLAYN-PFQPGQLPSQLSNLTNL 213 (698)
Q Consensus 139 ~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~-~~~~-~~~~~l~~L~~L~ls~n-~~~~~~~~~~l~~l~~L 213 (698)
.|+.|.+.++.-.+.-+ ..-.+++++++|.+.++... +..- ..-..|++|++|++..+ .++...+......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45666666654322111 12245566666666665421 1100 11134556666666553 22211111122345555
Q ss_pred CEEEcccC
Q 005401 214 EYLWLSGC 221 (698)
Q Consensus 214 ~~L~l~~n 221 (698)
++|++++|
T Consensus 219 ~~lNlSwc 226 (483)
T KOG4341|consen 219 KYLNLSWC 226 (483)
T ss_pred HHhhhccC
Confidence 55555555
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.58 E-value=0.001 Score=72.29 Aligned_cols=110 Identities=25% Similarity=0.238 Sum_probs=45.4
Q ss_pred CCCCCEEECCCCCCccc--CccccCCCCCCCEEECCCC-cCcccCC----cCccCCCCccEEEccCcc-cCCccCcccc-
Q 005401 113 CRNLTDLNLGSNLLVGA--IPATLSQLKNLKSLELQEN-NFTGDIP----ASFGEFTQLESLSLFNNL-LNGTISSSLG- 183 (698)
Q Consensus 113 l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~----~~~~~l~~L~~L~L~~n~-l~~~~~~~~~- 183 (698)
++.|+.|.+.++.-... .-.....+++|+.|+++++ ......+ .....+++|+.|+++++. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555432211 1233344555555555542 1110111 112334555555555554 3322222222
Q ss_pred CcCCCcEeeccCCC-CCCCCCcccccCCCCCCEEEcccCC
Q 005401 184 NISTLKELRLAYNP-FQPGQLPSQLSNLTNLEYLWLSGCN 222 (698)
Q Consensus 184 ~l~~L~~L~ls~n~-~~~~~~~~~l~~l~~L~~L~l~~n~ 222 (698)
.+++|++|.+.++. ++...+-.....+++|++|++++|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 24555555544444 3322222333344555555555444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.25 E-value=0.0057 Score=33.76 Aligned_cols=11 Identities=55% Similarity=0.670 Sum_probs=4.3
Q ss_pred CeEEcccCccc
Q 005401 501 GNLDLSENELS 511 (698)
Q Consensus 501 ~~L~Ls~n~l~ 511 (698)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.20 E-value=0.0095 Score=32.86 Aligned_cols=21 Identities=43% Similarity=0.722 Sum_probs=13.6
Q ss_pred CCCEEeCCCCcCcccCCcccCC
Q 005401 523 NINELNLANNRLSGEIPSEIGN 544 (698)
Q Consensus 523 ~L~~L~Ls~N~l~~~~~~~~~~ 544 (698)
+|++|||++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3667777777777 56655554
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.16 E-value=0.0026 Score=69.26 Aligned_cols=37 Identities=27% Similarity=0.096 Sum_probs=22.7
Q ss_pred CCCCCCEEEccCCcCCcC--CCccccCCCCCCEEEcccC
Q 005401 328 RSKNLSELKLFNNKLRGG--LPSELGKYSPLTTLDLSYN 364 (698)
Q Consensus 328 ~~~~L~~L~l~~n~l~~~--~~~~l~~~~~L~~L~ls~n 364 (698)
.++.|+.+.+..+.-... .......++.|++|+++++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 367788888877633222 1233456777888887763
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.91 E-value=0.00058 Score=72.18 Aligned_cols=83 Identities=19% Similarity=0.155 Sum_probs=39.5
Q ss_pred CCEEEcccCccceec----CcccCCCCCCCEEecccCcCcccCC----ccccCC-CCCcEEEccCccCcCcc----Cccc
Q 005401 356 LTTLDLSYNQFSGEI----PEGLCEKGSLEDLVLIYNSFSGKIP----QSLGKC-RSLRRVRLRHNLLSGSV----PEMF 422 (698)
Q Consensus 356 L~~L~ls~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~l-~~L~~L~l~~n~l~~~~----~~~~ 422 (698)
+..+.+.+|.+.... -..+.....|+.|++++|.+..... ..+... ..+++|++..|.+++.. ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 566677777665331 2234455666666666666653211 111111 33445555555554321 2223
Q ss_pred cCCCCCCEEEccCCcc
Q 005401 423 WGLPHMYLFELADNSF 438 (698)
Q Consensus 423 ~~l~~L~~L~l~~n~l 438 (698)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 3344555555555544
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.85 E-value=0.00051 Score=72.60 Aligned_cols=84 Identities=23% Similarity=0.262 Sum_probs=48.4
Q ss_pred CCCEEecccCcCccc----CCccccCCCCCcEEEccCccCcCccCcc----ccCC-CCCCEEEccCCccccc----cchh
Q 005401 379 SLEDLVLIYNSFSGK----IPQSLGKCRSLRRVRLRHNLLSGSVPEM----FWGL-PHMYLFELADNSFTGK----ISKS 445 (698)
Q Consensus 379 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~l~~~----~~~~ 445 (698)
.+..+.+.+|.+... +...+...++|..|++++|.+.+..-.. +... ..+++|++..|.++.. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 367778888877643 2244556778888888888777422111 1111 3455566666666533 2233
Q ss_pred hhcCCCCCeeeccCccc
Q 005401 446 ISGANNLSSLLVSRNNF 462 (698)
Q Consensus 446 ~~~~~~L~~L~l~~n~l 462 (698)
+.....++.++++.|.+
T Consensus 168 L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccchhHHHHHhccc
Confidence 44456666666666655
No 77
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=92.72 E-value=0.064 Score=58.46 Aligned_cols=18 Identities=44% Similarity=0.802 Sum_probs=15.8
Q ss_pred CCcCCeEecCCCceEEeC
Q 005401 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
+.+...||+|.||+||||
T Consensus 698 lkk~kvLGsgAfGtV~kG 715 (1177)
T KOG1025|consen 698 LKKDKVLGSGAFGTVYKG 715 (1177)
T ss_pred hhhhceeccccceeEEee
Confidence 556778999999999998
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.24 E-value=0.0068 Score=55.44 Aligned_cols=87 Identities=16% Similarity=0.220 Sum_probs=63.2
Q ss_pred ccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCC
Q 005401 470 VGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLN 549 (698)
Q Consensus 470 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 549 (698)
+......+.||++.|++.. ...-|+-++.|..||++.|.+. ..|+.+.....+..+++..|..+ ..|.+++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 3445566667777766652 2334556677778888888877 67778888888888888888887 6788888888888
Q ss_pred EEeCCCCcCc
Q 005401 550 YLDLSGNLFS 559 (698)
Q Consensus 550 ~L~Ls~N~l~ 559 (698)
++++..|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 8888888765
No 79
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=92.14 E-value=0.12 Score=52.86 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=12.6
Q ss_pred CeEecCCCceEEeC
Q 005401 685 NLIGSGASGKSQEG 698 (698)
Q Consensus 685 ~~iG~gg~g~VYkg 698 (698)
.+||+|+||.||||
T Consensus 216 eli~~Grfg~V~Ka 229 (534)
T KOG3653|consen 216 ELIGRGRFGCVWKA 229 (534)
T ss_pred HHhhcCccceeehh
Confidence 45999999999997
No 80
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=91.45 E-value=0.2 Score=54.54 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=26.3
Q ss_pred cccccchHH-HHHhCCCc---------CCeEecCCCceEEeC
Q 005401 667 FHKIGFSEF-EIADCLKE---------ENLIGSGASGKSQEG 698 (698)
Q Consensus 667 ~~~~~~~~~-~aT~~f~~---------~~~iG~gg~g~VYkg 698 (698)
++.++|+|= +|-+.|.+ +.+||.|-||.||+|
T Consensus 607 iDP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~G 648 (996)
T KOG0196|consen 607 IDPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSG 648 (996)
T ss_pred cCCccccCccHHHHHhhhhcChhheEEEEEEecccccceecc
Confidence 445788887 88777765 578999999999987
No 81
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=91.04 E-value=0.16 Score=63.31 Aligned_cols=45 Identities=22% Similarity=0.094 Sum_probs=39.0
Q ss_pred eCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhcCCc
Q 005401 552 DLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMYRG 596 (698)
Q Consensus 552 ~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~~~ 596 (698)
||++|+|+.+.+..|..+. |+.|+|++|||.|.|...|+..|...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~ 46 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEE 46 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHh
Confidence 6889999988888888886 99999999999999999888777543
No 82
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=90.94 E-value=0.095 Score=56.32 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.0
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005401 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
.+++|...++||+||||+||||
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG 164 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEG 164 (507)
T ss_pred cccCceEeeEeecCCCeEEEEE
Confidence 4678999999999999999986
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.81 E-value=0.19 Score=28.90 Aligned_cols=18 Identities=50% Similarity=0.593 Sum_probs=9.6
Q ss_pred CCCCEEeCCCCcCcccCc
Q 005401 546 PVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 546 ~~L~~L~Ls~N~l~~~~p 563 (698)
++|++|+|++|+|+...+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 445555666665554433
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.81 E-value=0.19 Score=28.90 Aligned_cols=18 Identities=50% Similarity=0.593 Sum_probs=9.6
Q ss_pred CCCCEEeCCCCcCcccCc
Q 005401 546 PVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 546 ~~L~~L~Ls~N~l~~~~p 563 (698)
++|++|+|++|+|+...+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 445555666665554433
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.66 E-value=0.0047 Score=56.47 Aligned_cols=84 Identities=17% Similarity=0.166 Sum_probs=35.5
Q ss_pred ccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCcc
Q 005401 86 FCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLE 165 (698)
Q Consensus 86 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 165 (698)
+..+...+.||++.|.+... -..|+-++.|..||++.|.+. ..|..+.....++.+++..|..+ ..|.+++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 44444555555555544321 112333444444444444443 33444444444444444444433 3333344444444
Q ss_pred EEEccCc
Q 005401 166 SLSLFNN 172 (698)
Q Consensus 166 ~L~L~~n 172 (698)
++++-.+
T Consensus 115 ~~e~k~~ 121 (326)
T KOG0473|consen 115 KNEQKKT 121 (326)
T ss_pred hhhhccC
Confidence 4443333
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.91 E-value=0.38 Score=27.66 Aligned_cols=13 Identities=46% Similarity=0.693 Sum_probs=5.9
Q ss_pred CCCEEECCCCCCc
Q 005401 115 NLTDLNLGSNLLV 127 (698)
Q Consensus 115 ~L~~L~Ls~n~l~ 127 (698)
+|++|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.91 E-value=0.38 Score=27.66 Aligned_cols=13 Identities=46% Similarity=0.693 Sum_probs=5.9
Q ss_pred CCCEEECCCCCCc
Q 005401 115 NLTDLNLGSNLLV 127 (698)
Q Consensus 115 ~L~~L~Ls~n~l~ 127 (698)
+|++|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.91 E-value=0.06 Score=48.56 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=22.5
Q ss_pred cEEEEECCCCCCCcCCCccccCCCCCCEEECCCC
Q 005401 67 RVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNN 100 (698)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n 100 (698)
.|+.+|-+++.|..+--..+.+++.++.|.+.++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 4777777777776655555666666666666665
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.72 E-value=0.23 Score=27.96 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=6.2
Q ss_pred CCCCeEEcccCcccc
Q 005401 498 SQLGNLDLSENELSG 512 (698)
Q Consensus 498 ~~L~~L~Ls~n~l~~ 512 (698)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344555555555443
No 90
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.11 E-value=0.097 Score=47.27 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=34.3
Q ss_pred CccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCccccc-CCCCCCEEEcccCC-CCCcCCccccCCCCCCEE
Q 005401 163 QLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLS-NLTNLEYLWLSGCN-LLGEIPESLTRLTKLKNL 240 (698)
Q Consensus 163 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~-~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L 240 (698)
.++.+|-++..|..+.-+.+.+++.++.|.+.++.--...--..++ -.++|+.|++++|. |+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3445555555554444444444455555544444321111011111 12455555555552 333333344445555555
Q ss_pred Ecc
Q 005401 241 DLS 243 (698)
Q Consensus 241 ~l~ 243 (698)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 443
No 91
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=84.58 E-value=1.2 Score=45.47 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=13.3
Q ss_pred CCeEecCCCceEEeC
Q 005401 684 ENLIGSGASGKSQEG 698 (698)
Q Consensus 684 ~~~iG~gg~g~VYkg 698 (698)
-..||+|.||.|.||
T Consensus 216 ~e~IGkGRyGEVwrG 230 (513)
T KOG2052|consen 216 QEIIGKGRFGEVWRG 230 (513)
T ss_pred EEEecCccccceeec
Confidence 457999999999987
No 92
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=83.58 E-value=0.5 Score=50.04 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=13.8
Q ss_pred cCCeEecCCCceEEeC
Q 005401 683 EENLIGSGASGKSQEG 698 (698)
Q Consensus 683 ~~~~iG~gg~g~VYkg 698 (698)
....||+|.||+||||
T Consensus 396 l~~rIGsGsFGtV~Rg 411 (678)
T KOG0193|consen 396 LGERIGSGSFGTVYRG 411 (678)
T ss_pred ccceeccccccceeec
Confidence 3456999999999998
No 93
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=83.38 E-value=0.8 Score=50.27 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=15.6
Q ss_pred CCcCCeEecCCCceEEeC
Q 005401 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
-...+.+|+|+||+||.|
T Consensus 996 it~~relg~gsfg~Vy~g 1013 (1025)
T KOG4258|consen 996 ITLGRELGQGSFGMVYEG 1013 (1025)
T ss_pred HhhhhhhccCccceEEEe
Confidence 556788999999999976
No 94
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=80.15 E-value=0.63 Score=51.30 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=20.0
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005401 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
++++|...+.||+||||.||+|
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka 151 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKA 151 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEE
Confidence 6778898999999999999986
No 95
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=79.92 E-value=2 Score=32.45 Aligned_cols=18 Identities=6% Similarity=0.110 Sum_probs=13.5
Q ss_pred cccccchHH-HHHhCCCcC
Q 005401 667 FHKIGFSEF-EIADCLKEE 684 (698)
Q Consensus 667 ~~~~~~~~~-~aT~~f~~~ 684 (698)
++-.+|+|- +|=..|.++
T Consensus 54 IDP~TYEDP~qAV~eFAkE 72 (75)
T PF14575_consen 54 IDPHTYEDPNQAVREFAKE 72 (75)
T ss_dssp --GGGSSSHHHHHHHCSSB
T ss_pred cCcccccCHHHHHHHHHhh
Confidence 344789999 999999876
No 96
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=79.23 E-value=8.6 Score=39.87 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=8.3
Q ss_pred CCceeeccCCcceec
Q 005401 260 SIEQIELFKNSLSGE 274 (698)
Q Consensus 260 ~L~~L~l~~n~~~~~ 274 (698)
.+++|....|...+.
T Consensus 355 R~q~l~~rdnnldge 369 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGE 369 (553)
T ss_pred eeeEeeccccccccc
Confidence 356666666655443
No 97
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.07 E-value=2.5 Score=24.34 Aligned_cols=16 Identities=44% Similarity=0.412 Sum_probs=11.4
Q ss_pred CCCCCEEeCCCCcCcc
Q 005401 545 LPVLNYLDLSGNLFSG 560 (698)
Q Consensus 545 l~~L~~L~Ls~N~l~~ 560 (698)
+.+|+.|++++|+|+.
T Consensus 1 L~~L~~L~L~~NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQNKIKK 16 (26)
T ss_pred CCccCEEECCCCccce
Confidence 3567788888887763
No 98
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=71.87 E-value=1.1 Score=43.89 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=18.8
Q ss_pred HHHhCCCcCCeEecCCCceEEeC
Q 005401 676 EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 676 ~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
+.-+.|..=|.|++|.||.||||
T Consensus 73 rsv~efe~lnrI~EGtyGiVYRa 95 (419)
T KOG0663|consen 73 RSVEEFEKLNRIEEGTYGVVYRA 95 (419)
T ss_pred ccHHHHHHHhhcccCcceeEEEe
Confidence 44455777789999999999997
No 99
>PTZ00284 protein kinase; Provisional
Probab=71.29 E-value=1.3 Score=47.94 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=22.6
Q ss_pred chHH-HHHhCCCcCCeEecCCCceEEeC
Q 005401 672 FSEF-EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 672 ~~~~-~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
..++ .+++.|.....||+|+||+||+|
T Consensus 121 ~~~~~~~~~~y~i~~~lG~G~fg~V~~a 148 (467)
T PTZ00284 121 GEDIDVSTQRFKILSLLGEGTFGKVVEA 148 (467)
T ss_pred CCccccCCCcEEEEEEEEeccCEEEEEE
Confidence 4455 67788988899999999999985
No 100
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.89 E-value=3.6 Score=23.64 Aligned_cols=13 Identities=46% Similarity=0.856 Sum_probs=6.5
Q ss_pred CCCEEeCCCCcCc
Q 005401 523 NINELNLANNRLS 535 (698)
Q Consensus 523 ~L~~L~Ls~N~l~ 535 (698)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3445555555554
No 101
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.75 E-value=3.9 Score=23.97 Aligned_cols=14 Identities=50% Similarity=0.657 Sum_probs=9.6
Q ss_pred CCCCEEeCCCCcCc
Q 005401 546 PVLNYLDLSGNLFS 559 (698)
Q Consensus 546 ~~L~~L~Ls~N~l~ 559 (698)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777775
No 102
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=67.96 E-value=21 Score=37.23 Aligned_cols=111 Identities=19% Similarity=0.150 Sum_probs=56.6
Q ss_pred ccCCceEEECCCCcccccccch--hccCCCCCeEEcccCcc---cc--cc--chhh--hccCCCCEEeCCCCcCcccCC-
Q 005401 472 LLSNLVEFSGDGNKFAGQIPGS--LAKLSQLGNLDLSENEL---SG--GI--PEGI--ESWKNINELNLANNRLSGEIP- 539 (698)
Q Consensus 472 ~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l---~~--~~--~~~~--~~l~~L~~L~Ls~N~l~~~~~- 539 (698)
+-..+++|....|.+.+..... ...-++.+.+++..-.- .+ .. +-.. ....-+.++.++.|++.....
T Consensus 352 ~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s 431 (553)
T KOG4242|consen 352 FGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLES 431 (553)
T ss_pred cceeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHH
Confidence 3345777777777776554332 33345566666654321 10 00 0000 112346677888887764322
Q ss_pred --cccCCCCCCCEEeCCCCcCcc----cCccccccc-ccCeEEcccCcCc
Q 005401 540 --SEIGNLPVLNYLDLSGNLFSG----KIPLELQNL-RLNVLNLSNNRLS 582 (698)
Q Consensus 540 --~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~~-~L~~L~ls~N~l~ 582 (698)
..+..-+.+..||+++|.... .+|..+..- +++.+..+.|...
T Consensus 432 ~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 432 AINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred HHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 223445678888888887764 233332221 2555555555443
No 103
>PTZ00036 glycogen synthase kinase; Provisional
Probab=65.26 E-value=2.4 Score=45.38 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=18.4
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005401 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
.++.|.....||+|+||.||+|
T Consensus 64 ~~~~y~~~~~LG~G~fg~Vy~~ 85 (440)
T PTZ00036 64 PNKSYKLGNIIGNGSFGVVYEA 85 (440)
T ss_pred cCCeEEEeEEEEeCCCEEEEEE
Confidence 4456777889999999999985
No 104
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=62.46 E-value=4.1 Score=26.15 Aligned_cols=10 Identities=10% Similarity=0.305 Sum_probs=3.7
Q ss_pred hhhhHHHHHH
Q 005401 625 WIFGLIFLLA 634 (698)
Q Consensus 625 ~~~~~~~~~~ 634 (698)
+.+++++.++
T Consensus 13 Ia~~VvVPV~ 22 (40)
T PF08693_consen 13 IAVGVVVPVG 22 (40)
T ss_pred EEEEEEechH
Confidence 3333333333
No 105
>PF15102 TMEM154: TMEM154 protein family
Probab=60.23 E-value=8 Score=33.12 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=4.2
Q ss_pred HHhhheeeehh
Q 005401 641 GVIWFYVKYRK 651 (698)
Q Consensus 641 ~~~~~~~~~~~ 651 (698)
+++++++|||+
T Consensus 76 V~lv~~~kRkr 86 (146)
T PF15102_consen 76 VCLVIYYKRKR 86 (146)
T ss_pred HHheeEEeecc
Confidence 33333333333
No 106
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=58.62 E-value=3.5 Score=42.94 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=21.9
Q ss_pred chHH-HHHhCCCcCCeEecCCCceEEeC
Q 005401 672 FSEF-EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 672 ~~~~-~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
++++ .+.++|.....||+|+||.||++
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~ 62 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLV 62 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEE
Confidence 4455 56678888889999999999974
No 107
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=56.99 E-value=2.5 Score=44.00 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=15.3
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005401 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|.+-.+||+|-||.||||
T Consensus 118 ~feki~kIGeGTyg~VYkA 136 (560)
T KOG0600|consen 118 SFEKIEKIGEGTYGQVYKA 136 (560)
T ss_pred HHHHHHHhcCcchhheeEe
Confidence 3455567999999999996
No 108
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=55.90 E-value=4.2 Score=42.33 Aligned_cols=23 Identities=30% Similarity=0.250 Sum_probs=18.1
Q ss_pred HHHhCCCcCCeEecCCCceEEeC
Q 005401 676 EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 676 ~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
..+++|.....||+|+||.||+|
T Consensus 40 ~~~~~y~~~~~lG~G~fg~Vy~~ 62 (370)
T cd05621 40 MKAEDYDVVKVIGRGAFGEVQLV 62 (370)
T ss_pred CCHHHCeEEEEEEecCCeEEEEE
Confidence 34456777788999999999974
No 109
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=55.60 E-value=7.8 Score=42.63 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=19.2
Q ss_pred HHHhCCCcCCeEecCCCceEEeC
Q 005401 676 EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 676 ~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
..+..|...++||+|+||.||+|
T Consensus 330 ~~~~~~~~~~~iG~G~~g~Vy~~ 352 (535)
T PRK09605 330 EVKRRKIPDHLIGKGAEADIKKG 352 (535)
T ss_pred ccccccCccceeccCCcEEEEEE
Confidence 45566678899999999999984
No 110
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=54.75 E-value=5.9 Score=40.84 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=16.6
Q ss_pred HhCCCcCCeEecCCCceEE
Q 005401 678 ADCLKEENLIGSGASGKSQ 696 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VY 696 (698)
.+.|..-++||+||||.||
T Consensus 184 ~n~F~~~RvlGkGGFGEV~ 202 (591)
T KOG0986|consen 184 KNTFRVYRVLGKGGFGEVC 202 (591)
T ss_pred ccceeeeEEEeccccccee
Confidence 3458888999999999999
No 111
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=53.49 E-value=3.9 Score=42.53 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=17.8
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005401 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
..++|.....||+|+||.||+|
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~ 62 (370)
T cd05596 41 KAEDFDVIKVIGRGAFGEVQLV 62 (370)
T ss_pred CHHHcEEEEEEeeCCCEEEEEE
Confidence 3456777788999999999974
No 112
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=53.31 E-value=6.6 Score=41.58 Aligned_cols=14 Identities=36% Similarity=0.632 Sum_probs=13.0
Q ss_pred CeEecCCCceEEeC
Q 005401 685 NLIGSGASGKSQEG 698 (698)
Q Consensus 685 ~~iG~gg~g~VYkg 698 (698)
.+||+|.||.||+|
T Consensus 163 kkLGeGaFGeV~~G 176 (474)
T KOG0194|consen 163 KKLGEGAFGEVFKG 176 (474)
T ss_pred ceeecccccEEEEE
Confidence 67999999999997
No 113
>PHA03210 serine/threonine kinase US3; Provisional
Probab=52.65 E-value=6.2 Score=43.01 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=17.4
Q ss_pred HHhCCCcCCeEecCCCceEEe
Q 005401 677 IADCLKEENLIGSGASGKSQE 697 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYk 697 (698)
..+.|.-...||+|+||+||+
T Consensus 146 ~~~~Y~ii~~LG~G~fG~Vyl 166 (501)
T PHA03210 146 FLAHFRVIDDLPAGAFGKIFI 166 (501)
T ss_pred hhhccEEEeEecCCCCcceEE
Confidence 345677778999999999996
No 114
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=52.64 E-value=4.1 Score=47.26 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=17.3
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005401 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
--+.|-+=..+|+||||.|||.
T Consensus 477 Y~~DFEEL~lLGkGGFG~VvkV 498 (1351)
T KOG1035|consen 477 YLNDFEELELLGKGGFGSVVKV 498 (1351)
T ss_pred HhhhhHHHHHhcCCCCceEEEE
Confidence 3445666678999999999983
No 115
>PHA03209 serine/threonine kinase US3; Provisional
Probab=52.24 E-value=6.2 Score=40.78 Aligned_cols=23 Identities=9% Similarity=0.027 Sum_probs=19.5
Q ss_pred HHHhCCCcCCeEecCCCceEEeC
Q 005401 676 EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 676 ~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
.++.+|.....||+|+||.||+|
T Consensus 63 ~~~~~y~~~~~lg~G~~g~Vy~~ 85 (357)
T PHA03209 63 VASLGYTVIKTLTPGSEGRVFVA 85 (357)
T ss_pred hhhcCcEEEEEecCCCCeEEEEE
Confidence 45567888889999999999985
No 116
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=50.95 E-value=5.9 Score=40.72 Aligned_cols=12 Identities=42% Similarity=0.786 Sum_probs=11.5
Q ss_pred EecCCCceEEeC
Q 005401 687 IGSGASGKSQEG 698 (698)
Q Consensus 687 iG~gg~g~VYkg 698 (698)
||+|+||+||||
T Consensus 49 iG~G~~g~V~~~ 60 (362)
T KOG0192|consen 49 LGSGSFGTVYKG 60 (362)
T ss_pred cccCCceeEEEE
Confidence 999999999986
No 117
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.90 E-value=7 Score=41.36 Aligned_cols=65 Identities=23% Similarity=0.243 Sum_probs=36.3
Q ss_pred ccCCCCCeEEcccCcccccc--chhhhccCCCCEEeCCCC--cCcccC-CcccCCCCCCCEEeCCCCcCcc
Q 005401 495 AKLSQLGNLDLSENELSGGI--PEGIESWKNINELNLANN--RLSGEI-PSEIGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 495 ~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N--~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~ 560 (698)
.+.+.+..+.|++|++.... ...-...++|++|+|++| .+.... -..+++ ..|++|-+.+|.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcccc
Confidence 34566777888888875431 111134467778888887 443110 011222 236777777777765
No 118
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=47.36 E-value=6.8 Score=40.38 Aligned_cols=18 Identities=44% Similarity=0.545 Sum_probs=14.6
Q ss_pred CCcCCeEecCCCceEEeC
Q 005401 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.....||+|+||.||+|
T Consensus 76 ~~~~~~lg~G~~g~V~~~ 93 (353)
T PLN00034 76 LERVNRIGSGAGGTVYKV 93 (353)
T ss_pred HhhhhhccCCCCeEEEEE
Confidence 444567999999999985
No 119
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=45.47 E-value=8 Score=44.71 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=16.2
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005401 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|.-+..||+||||+||+|
T Consensus 699 ~~~I~~e~G~g~y~~vy~a 717 (974)
T KOG1166|consen 699 KFCISKEIGEGSYGSVYVA 717 (974)
T ss_pred eEEEEeeeccccceEEEEe
Confidence 3666788999999999986
No 120
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=43.17 E-value=13 Score=36.74 Aligned_cols=14 Identities=14% Similarity=0.116 Sum_probs=5.7
Q ss_pred HHHHHHhhheeeeh
Q 005401 637 VFVVGVIWFYVKYR 650 (698)
Q Consensus 637 ~~~~~~~~~~~~~~ 650 (698)
++++++++++|+||
T Consensus 270 LIMvIIYLILRYRR 283 (299)
T PF02009_consen 270 LIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 121
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.99 E-value=9.8 Score=40.36 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=8.1
Q ss_pred CCCEEECCCCcCcc
Q 005401 139 NLKSLELQENNFTG 152 (698)
Q Consensus 139 ~L~~L~L~~n~l~~ 152 (698)
.|++|-+.+|.+..
T Consensus 271 ~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 271 PLEELVLEGNPLCT 284 (585)
T ss_pred CHHHeeecCCcccc
Confidence 35566666666543
No 122
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=42.14 E-value=13 Score=32.22 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=4.5
Q ss_pred HhCCCcCCeEe
Q 005401 678 ADCLKEENLIG 688 (698)
Q Consensus 678 T~~f~~~~~iG 688 (698)
++.|..+.=+|
T Consensus 111 ~~~y~s~splg 121 (154)
T PF04478_consen 111 SDKYESNSPLG 121 (154)
T ss_pred ccccccCCCCC
Confidence 34444443333
No 123
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=39.29 E-value=14 Score=38.94 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=16.6
Q ss_pred HhCCCcCCeEecCCCceEEe
Q 005401 678 ADCLKEENLIGSGASGKSQE 697 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VYk 697 (698)
.+.|.-=.+||+|+||.||-
T Consensus 140 ~~DFe~Lk~IgkGAfGeVrL 159 (550)
T KOG0605|consen 140 LDDFELLKVIGKGAFGEVRL 159 (550)
T ss_pred cccchhheeeccccceeEEE
Confidence 44577778899999999994
No 124
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=38.85 E-value=13 Score=30.78 Aligned_cols=7 Identities=14% Similarity=0.036 Sum_probs=2.7
Q ss_pred cccCChh
Q 005401 582 SGELPPL 588 (698)
Q Consensus 582 ~~~~~~~ 588 (698)
++.||..
T Consensus 33 ~~~Cp~G 39 (129)
T PF12191_consen 33 TTPCPRG 39 (129)
T ss_dssp CSSS-SS
T ss_pred CCCCCCC
Confidence 3455533
No 125
>PHA03212 serine/threonine kinase US3; Provisional
Probab=38.16 E-value=13 Score=38.91 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=16.7
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.-...||+|+||.||++
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~ 111 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFAC 111 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEE
Confidence 45777778999999999974
No 126
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=37.88 E-value=24 Score=20.04 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=5.6
Q ss_pred CCCCEEECCCC
Q 005401 114 RNLTDLNLGSN 124 (698)
Q Consensus 114 ~~L~~L~Ls~n 124 (698)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555554
No 127
>PHA03211 serine/threonine kinase US3; Provisional
Probab=37.51 E-value=13 Score=40.01 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=16.4
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005401 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
+|.-...||+|+||.||+|
T Consensus 170 gy~i~~~Lg~G~~G~Vy~a 188 (461)
T PHA03211 170 GFAIHRALTPGSEGCVFES 188 (461)
T ss_pred CeEEEEEEccCCCeEEEEE
Confidence 4677788999999999985
No 128
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=37.43 E-value=15 Score=42.83 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=15.1
Q ss_pred CCcCCeEecCCCceEEeC
Q 005401 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
-...+.||+|.||.||+|
T Consensus 694 v~l~~~lG~G~FG~VY~g 711 (1025)
T KOG1095|consen 694 VTLLRVLGKGAFGEVYEG 711 (1025)
T ss_pred eEeeeeeccccccceEEE
Confidence 344678999999999997
No 129
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=34.61 E-value=14 Score=39.91 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=14.5
Q ss_pred CcCCeEecCCCceEEeC
Q 005401 682 KEENLIGSGASGKSQEG 698 (698)
Q Consensus 682 ~~~~~iG~gg~g~VYkg 698 (698)
..+.+||+|-||-||+|
T Consensus 392 tl~r~iG~GqFGdVy~g 408 (974)
T KOG4257|consen 392 TLKRLIGEGQFGDVYKG 408 (974)
T ss_pred cHHHhhcCCcccceeee
Confidence 34567999999999997
No 130
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=32.57 E-value=53 Score=33.03 Aligned_cols=6 Identities=17% Similarity=0.517 Sum_probs=2.6
Q ss_pred CEEeCC
Q 005401 549 NYLDLS 554 (698)
Q Consensus 549 ~~L~Ls 554 (698)
+.+.+.
T Consensus 231 q~i~lt 236 (306)
T PF01299_consen 231 QSINLT 236 (306)
T ss_pred CEEEec
Confidence 444443
No 131
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.73 E-value=45 Score=37.53 Aligned_cols=17 Identities=29% Similarity=0.265 Sum_probs=13.7
Q ss_pred CcCCeEecCCCceEEeC
Q 005401 682 KEENLIGSGASGKSQEG 698 (698)
Q Consensus 682 ~~~~~iG~gg~g~VYkg 698 (698)
.....||+|.||.||+|
T Consensus 489 ~~~~eLGegaFGkVf~a 505 (774)
T KOG1026|consen 489 VFKEELGEGAFGKVFLA 505 (774)
T ss_pred eehhhhcCchhhhhhhh
Confidence 33455999999999986
No 132
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.20 E-value=29 Score=44.65 Aligned_cols=72 Identities=15% Similarity=0.066 Sum_probs=42.6
Q ss_pred EcccCccccccchhhhccCCCCEEeCCCCcCccc-CCcccCCCCCCCEEeC-CCCcCcccCcccccccccCeEE
Q 005401 504 DLSENELSGGIPEGIESWKNINELNLANNRLSGE-IPSEIGNLPVLNYLDL-SGNLFSGKIPLELQNLRLNVLN 575 (698)
Q Consensus 504 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L-s~N~l~~~~p~~~~~~~L~~L~ 575 (698)
||++|+|+.+.+..|..+.+|++|+|++|.+... --.+|...-.-....+ ....+...-|..+....|..+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~ 74 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIP 74 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCC
Confidence 6889999977778888899999999999988631 1111111000001111 2234666777766665544443
No 133
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=30.09 E-value=43 Score=34.18 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=17.3
Q ss_pred HhCCCcCCeEecCCCceEEeC
Q 005401 678 ADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VYkg 698 (698)
-..|.-...+-+|-||.||+|
T Consensus 283 r~Rv~l~~llqEGtFGri~~g 303 (563)
T KOG1024|consen 283 RCRVRLSCLLQEGTFGRIYRG 303 (563)
T ss_pred hhheechhhhhcCchhheeee
Confidence 344777778899999999997
No 134
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=29.25 E-value=7.9 Score=39.65 Aligned_cols=14 Identities=21% Similarity=0.461 Sum_probs=12.6
Q ss_pred CeEecCCCceEEeC
Q 005401 685 NLIGSGASGKSQEG 698 (698)
Q Consensus 685 ~~iG~gg~g~VYkg 698 (698)
+.+|+|||..||||
T Consensus 469 hLLGrGGFSEVyKA 482 (775)
T KOG1151|consen 469 HLLGRGGFSEVYKA 482 (775)
T ss_pred HHhccccHHHHHHh
Confidence 57999999999986
No 135
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=28.91 E-value=55 Score=35.61 Aligned_cols=27 Identities=11% Similarity=0.288 Sum_probs=13.8
Q ss_pred CcchhhhHHHHHHHHHHHHHHhhheee
Q 005401 622 GSLWIFGLIFLLAGVVFVVGVIWFYVK 648 (698)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (698)
..++++++++.++++++++++++|+..
T Consensus 268 NlWII~gVlvPv~vV~~Iiiil~~~LC 294 (684)
T PF12877_consen 268 NLWIIAGVLVPVLVVLLIIIILYWKLC 294 (684)
T ss_pred CeEEEehHhHHHHHHHHHHHHHHHHHh
Confidence 345555665555555555444444433
No 136
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=28.85 E-value=51 Score=26.65 Aligned_cols=27 Identities=11% Similarity=0.351 Sum_probs=11.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhheeeehh
Q 005401 625 WIFGLIFLLAGVVFVVGVIWFYVKYRK 651 (698)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (698)
+++++++.+++++++.+++++...|.+
T Consensus 64 ili~lls~v~IlVily~IyYFVILRer 90 (101)
T PF06024_consen 64 ILISLLSFVCILVILYAIYYFVILRER 90 (101)
T ss_pred hHHHHHHHHHHHHHHhhheEEEEEecc
Confidence 333444444444444444444444433
No 137
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=28.32 E-value=97 Score=24.95 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=15.7
Q ss_pred EEcccC-cCcccCChhhhhhcCCcccCCCCCCCC
Q 005401 574 LNLSNN-RLSGELPPLYAKEMYRGSFLGNPGLCG 606 (698)
Q Consensus 574 L~ls~N-~l~~~~~~~~~~~~~~~~~~~n~~~c~ 606 (698)
+.+++| .+.|.|.. |...+-.||-.-|.
T Consensus 12 ~~~~~~t~l~ckc~~-----~n~s~~sg~~~~c~ 40 (150)
T PF06084_consen 12 TSKSENTHLTCKCSP-----WNPSSNSGNHSKCH 40 (150)
T ss_pred EeccCCeeEEEecCC-----CCCcccCCCCcchh
Confidence 345555 67777752 33444456666664
No 138
>PF15050 SCIMP: SCIMP protein
Probab=27.94 E-value=43 Score=27.42 Aligned_cols=7 Identities=0% Similarity=-0.321 Sum_probs=2.7
Q ss_pred HHhhhee
Q 005401 641 GVIWFYV 647 (698)
Q Consensus 641 ~~~~~~~ 647 (698)
+++++++
T Consensus 26 IlyCvcR 32 (133)
T PF15050_consen 26 ILYCVCR 32 (133)
T ss_pred HHHHHHH
Confidence 3333343
No 139
>PHA03207 serine/threonine kinase US3; Provisional
Probab=26.56 E-value=25 Score=36.79 Aligned_cols=19 Identities=11% Similarity=0.038 Sum_probs=15.4
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005401 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|.....||+|+||.||++
T Consensus 93 ~y~i~~~Lg~G~~g~Vy~~ 111 (392)
T PHA03207 93 QYNILSSLTPGSEGEVFVC 111 (392)
T ss_pred ceEEEEeecCCCCeEEEEE
Confidence 4556677999999999974
No 140
>PTZ00046 rifin; Provisional
Probab=25.74 E-value=41 Score=33.96 Aligned_cols=11 Identities=18% Similarity=0.014 Sum_probs=4.3
Q ss_pred HHHhhheeeeh
Q 005401 640 VGVIWFYVKYR 650 (698)
Q Consensus 640 ~~~~~~~~~~~ 650 (698)
++++.+.|+||
T Consensus 332 vIIYLILRYRR 342 (358)
T PTZ00046 332 VIIYLILRYRR 342 (358)
T ss_pred HHHHHHHHhhh
Confidence 33344444333
No 141
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=25.63 E-value=42 Score=33.80 Aligned_cols=11 Identities=18% Similarity=0.014 Sum_probs=4.3
Q ss_pred HHHhhheeeeh
Q 005401 640 VGVIWFYVKYR 650 (698)
Q Consensus 640 ~~~~~~~~~~~ 650 (698)
++++...|+||
T Consensus 327 vIIYLILRYRR 337 (353)
T TIGR01477 327 VIIYLILRYRR 337 (353)
T ss_pred HHHHHHHHhhh
Confidence 33344444333
No 142
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=24.90 E-value=36 Score=36.27 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=15.0
Q ss_pred CCcCCeEecCCCceEEeC
Q 005401 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.-..+||+|+|.+||+|
T Consensus 75 F~Fg~~lGeGSYStV~~A 92 (604)
T KOG0592|consen 75 FKFGKILGEGSYSTVVLA 92 (604)
T ss_pred cchhheeccccceeEEEe
Confidence 555667999999999985
No 143
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=24.18 E-value=21 Score=34.28 Aligned_cols=12 Identities=42% Similarity=0.626 Sum_probs=10.8
Q ss_pred eEecCCCceEEe
Q 005401 686 LIGSGASGKSQE 697 (698)
Q Consensus 686 ~iG~gg~g~VYk 697 (698)
.||.|.||+|||
T Consensus 71 ~iG~G~fG~V~K 82 (361)
T KOG1006|consen 71 EIGNGAFGTVNK 82 (361)
T ss_pred HhcCCcchhhhh
Confidence 389999999997
No 144
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.11 E-value=62 Score=27.18 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=9.3
Q ss_pred cchhhhHHHHHHHHHH
Q 005401 623 SLWIFGLIFLLAGVVF 638 (698)
Q Consensus 623 ~~~~~~~~~~~~~~~~ 638 (698)
..++++++++++++++
T Consensus 67 ~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHH
Confidence 3455666666666443
No 145
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=22.83 E-value=37 Score=31.25 Aligned_cols=8 Identities=13% Similarity=0.160 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 005401 635 GVVFVVGV 642 (698)
Q Consensus 635 ~~~~~~~~ 642 (698)
++++++++
T Consensus 50 VILVI~i~ 57 (221)
T PF08374_consen 50 VILVIFIV 57 (221)
T ss_pred hHHHHHHH
Confidence 33333333
No 146
>PHA03283 envelope glycoprotein E; Provisional
Probab=22.61 E-value=1e+02 Score=32.69 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHhhheee-ehhcccccc
Q 005401 628 GLIFLLAGVVFVVGVIWFYVK-YRKLKKTKK 657 (698)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 657 (698)
+++++.++++++.+.+|.+.+ |+.+++.++
T Consensus 404 ~~~~~~~~~~~~~l~vw~c~~~r~~~~~~y~ 434 (542)
T PHA03283 404 LAIICTCAALLVALVVWGCILYRRSNRKPYE 434 (542)
T ss_pred HHHHHHHHHHHHHHhhhheeeehhhcCCccc
Confidence 333333334444344444444 333444443
No 147
>PHA03265 envelope glycoprotein D; Provisional
Probab=20.03 E-value=51 Score=32.75 Aligned_cols=16 Identities=19% Similarity=0.067 Sum_probs=7.3
Q ss_pred HHHHHhhheeeehhcc
Q 005401 638 FVVGVIWFYVKYRKLK 653 (698)
Q Consensus 638 ~~~~~~~~~~~~~~~~ 653 (698)
+.++++++++||+..+
T Consensus 364 vg~il~~~~rr~k~~~ 379 (402)
T PHA03265 364 VGVILYVCLRRKKELK 379 (402)
T ss_pred hhHHHHHHhhhhhhhh
Confidence 3344455555444443
Done!