Query 005401
Match_columns 698
No_of_seqs 614 out of 4934
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 00:18:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.1E-79 1.1E-83 697.5 49.6 595 16-617 5-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.6E-64 5.4E-69 576.4 38.9 517 66-586 126-744 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 6.6E-61 2.3E-65 542.4 47.8 541 54-595 11-636 (680)
4 3t6q_A CD180 antigen; protein- 100.0 2.3E-59 7.9E-64 522.7 42.8 523 66-595 33-573 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-57 1.2E-61 511.9 50.0 533 70-606 8-624 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-57 4.5E-62 508.5 43.7 519 66-596 32-572 (606)
7 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-57 4.7E-62 524.6 40.4 525 54-594 14-572 (844)
8 3t6q_A CD180 antigen; protein- 100.0 3.7E-56 1.3E-60 496.8 47.4 527 70-606 16-562 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2.9E-55 1E-59 489.6 36.9 487 65-563 55-562 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 7E-55 2.4E-59 502.0 40.8 521 70-605 8-561 (844)
11 4eco_A Uncharacterized protein 100.0 7E-56 2.4E-60 493.4 22.5 506 17-562 24-603 (636)
12 2z63_A TOLL-like receptor 4, v 100.0 1.1E-53 3.9E-58 473.6 40.2 492 90-590 28-539 (570)
13 4ecn_A Leucine-rich repeat pro 100.0 1.4E-53 4.6E-58 481.3 32.0 512 17-586 263-870 (876)
14 2z63_A TOLL-like receptor 4, v 100.0 1.1E-50 3.7E-55 449.7 38.3 502 53-564 13-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-51 4.1E-56 454.9 29.9 497 53-594 3-523 (549)
16 4g8a_A TOLL-like receptor 4; l 100.0 3.2E-49 1.1E-53 444.3 42.6 496 91-595 53-593 (635)
17 2z7x_B TOLL-like receptor 1, v 100.0 3.2E-49 1.1E-53 432.1 25.9 469 93-594 3-494 (520)
18 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-48 4E-53 431.0 30.1 489 43-563 4-514 (549)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-47 5.8E-52 418.5 29.5 456 69-563 3-485 (520)
20 4eco_A Uncharacterized protein 100.0 2E-48 7E-53 433.3 20.8 464 90-585 81-603 (636)
21 4g8a_A TOLL-like receptor 4; l 100.0 4.4E-45 1.5E-49 410.6 38.5 500 54-562 38-583 (635)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-45 3.7E-50 407.4 29.1 460 69-590 34-518 (562)
23 4ecn_A Leucine-rich repeat pro 100.0 1E-44 3.4E-49 409.1 29.0 357 221-588 435-846 (876)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1E-43 3.6E-48 391.6 27.8 442 65-563 51-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 4.3E-41 1.5E-45 361.5 29.9 387 166-594 14-421 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 8.5E-41 2.9E-45 359.2 27.7 364 90-467 30-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 1.7E-39 5.9E-44 345.3 28.1 371 113-545 10-382 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 5.9E-39 2E-43 341.3 26.3 422 67-568 12-438 (454)
29 1ogq_A PGIP-2, polygalacturona 100.0 1.6E-39 5.4E-44 329.4 17.5 291 20-317 3-302 (313)
30 2id5_A Lingo-1, leucine rich r 100.0 5E-38 1.7E-42 339.4 28.1 344 238-607 14-359 (477)
31 3bz5_A Internalin-J, INLJ; leu 100.0 3.4E-37 1.2E-41 328.0 28.5 362 105-590 33-395 (457)
32 3bz5_A Internalin-J, INLJ; leu 100.0 5.8E-37 2E-41 326.2 29.1 358 83-540 35-392 (457)
33 1o6v_A Internalin A; bacterial 100.0 4E-36 1.4E-40 322.8 31.5 346 112-560 44-389 (466)
34 1o6v_A Internalin A; bacterial 100.0 8.4E-36 2.9E-40 320.3 33.2 342 67-463 47-388 (466)
35 2id5_A Lingo-1, leucine rich r 100.0 2.8E-36 9.6E-41 325.7 26.5 350 213-588 13-362 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 3.9E-35 1.3E-39 307.9 26.7 333 234-607 44-377 (390)
37 3oja_B Anopheles plasmodium-re 100.0 8.3E-35 2.8E-39 322.1 27.2 333 234-607 50-383 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 2.7E-34 9.1E-39 301.6 27.8 311 88-440 43-353 (390)
39 3oja_B Anopheles plasmodium-re 100.0 2.8E-33 9.4E-38 309.9 28.1 311 88-440 49-359 (597)
40 4fmz_A Internalin; leucine ric 100.0 2.1E-32 7.2E-37 282.5 29.3 307 86-463 40-346 (347)
41 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-33 4.4E-38 285.9 19.4 250 331-583 51-305 (313)
42 4fmz_A Internalin; leucine ric 100.0 1.8E-32 6.3E-37 283.0 28.0 307 182-559 40-346 (347)
43 4fcg_A Uncharacterized protein 100.0 5.8E-33 2E-37 282.7 15.1 274 16-296 20-314 (328)
44 1xku_A Decorin; proteoglycan, 100.0 7.2E-31 2.5E-35 268.7 28.0 266 307-579 53-329 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 4.8E-31 1.7E-35 270.1 25.2 286 284-579 34-330 (332)
46 1z7x_W Ribonuclease inhibitor; 100.0 5.2E-35 1.8E-39 314.8 -4.8 382 162-586 3-444 (461)
47 2ft3_A Biglycan; proteoglycan, 100.0 1.8E-30 6.2E-35 265.9 27.8 288 91-437 34-331 (332)
48 1z7x_W Ribonuclease inhibitor; 100.0 4.3E-34 1.5E-38 307.6 -0.5 262 323-584 106-413 (461)
49 1xku_A Decorin; proteoglycan, 100.0 4.3E-30 1.5E-34 262.9 28.1 289 91-437 32-330 (330)
50 2z80_A TOLL-like receptor 2, v 100.0 7.2E-31 2.5E-35 271.3 16.8 282 310-594 35-327 (353)
51 3zyi_A Leucine-rich repeat-con 100.0 1.4E-29 4.6E-34 270.8 25.9 258 333-595 57-316 (452)
52 3zyj_A Leucine-rich repeat-con 100.0 1.5E-29 5.2E-34 269.5 25.7 258 333-595 46-305 (440)
53 2z66_A Variable lymphocyte rec 100.0 6.8E-30 2.3E-34 258.6 21.1 259 309-593 10-272 (306)
54 3ogk_B Coronatine-insensitive 100.0 1.6E-32 5.3E-37 305.3 -2.5 137 424-560 376-527 (592)
55 2z66_A Variable lymphocyte rec 100.0 2.5E-29 8.5E-34 254.4 19.9 276 286-588 10-293 (306)
56 1ozn_A Reticulon 4 receptor; N 100.0 1E-28 3.6E-33 247.0 19.6 215 379-593 33-249 (285)
57 3ogk_B Coronatine-insensitive 100.0 2.1E-31 7.2E-36 296.2 -0.8 235 322-556 285-548 (592)
58 2z80_A TOLL-like receptor 2, v 100.0 5.3E-29 1.8E-33 257.3 16.9 274 287-563 35-318 (353)
59 3zyi_A Leucine-rich repeat-con 100.0 4.5E-28 1.5E-32 259.1 23.2 228 66-296 75-303 (452)
60 1ozn_A Reticulon 4 receptor; N 100.0 6.9E-28 2.4E-32 241.0 20.5 234 354-588 32-267 (285)
61 3zyj_A Leucine-rich repeat-con 100.0 1.4E-27 4.6E-32 254.4 23.9 249 308-561 45-294 (440)
62 4fcg_A Uncharacterized protein 100.0 1E-27 3.4E-32 244.1 20.1 225 330-559 81-314 (328)
63 3o53_A Protein LRIM1, AGAP0063 100.0 1.2E-28 4.2E-33 250.1 10.3 264 309-586 13-280 (317)
64 1wwl_A Monocyte differentiatio 99.9 6.5E-29 2.2E-33 251.5 5.4 201 377-583 94-310 (312)
65 3oja_A Leucine-rich immune mol 99.9 1.3E-27 4.4E-32 256.6 13.4 244 329-586 33-286 (487)
66 2z62_A TOLL-like receptor 4, v 99.9 2.3E-26 8E-31 228.7 21.5 214 379-593 29-249 (276)
67 1wwl_A Monocyte differentiatio 99.9 3.1E-28 1.1E-32 246.6 6.3 251 279-560 39-310 (312)
68 2p1m_B Transport inhibitor res 99.9 2.2E-30 7.6E-35 288.1 -11.5 465 53-558 34-543 (594)
69 2p1m_B Transport inhibitor res 99.9 1.9E-29 6.3E-34 280.7 -4.5 380 161-560 104-520 (594)
70 3o53_A Protein LRIM1, AGAP0063 99.9 8E-28 2.7E-32 244.1 7.3 265 287-565 14-282 (317)
71 2o6q_A Variable lymphocyte rec 99.9 1.6E-25 5.3E-30 221.7 23.4 218 52-274 3-220 (270)
72 3g06_A SSPH2 (leucine-rich rep 99.9 4.6E-26 1.6E-30 249.1 19.6 177 42-248 12-194 (622)
73 2o6q_A Variable lymphocyte rec 99.9 3E-25 1E-29 219.7 21.1 205 380-587 18-223 (270)
74 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-24 4.5E-29 237.6 26.5 147 402-569 161-307 (622)
75 2z62_A TOLL-like receptor 4, v 99.9 1E-24 3.4E-29 216.9 21.9 209 90-299 28-240 (276)
76 3oja_A Leucine-rich immune mol 99.9 3.6E-26 1.2E-30 245.4 12.1 225 352-590 32-258 (487)
77 1p9a_G Platelet glycoprotein I 99.9 5.3E-25 1.8E-29 219.6 19.7 211 377-594 9-220 (290)
78 3rfs_A Internalin B, repeat mo 99.9 1.2E-23 4E-28 208.3 16.3 183 398-588 59-241 (272)
79 1p9a_G Platelet glycoprotein I 99.9 3.6E-23 1.2E-27 206.3 19.9 204 351-561 7-210 (290)
80 3rfs_A Internalin B, repeat mo 99.9 8.8E-23 3E-27 202.0 19.6 176 67-247 42-217 (272)
81 3m19_A Variable lymphocyte rec 99.9 9.2E-23 3.2E-27 199.4 19.4 191 52-249 3-193 (251)
82 2ca6_A RAN GTPase-activating p 99.9 8.7E-25 3E-29 228.7 4.3 246 321-586 23-320 (386)
83 3goz_A Leucine-rich repeat-con 99.9 1.1E-24 3.8E-29 225.4 4.9 256 311-586 3-301 (362)
84 3m19_A Variable lymphocyte rec 99.9 8.2E-23 2.8E-27 199.7 17.9 188 404-594 16-205 (251)
85 3goz_A Leucine-rich repeat-con 99.9 2E-24 6.9E-29 223.4 6.6 228 359-586 3-270 (362)
86 2ca6_A RAN GTPase-activating p 99.9 1.2E-24 4E-29 227.7 3.9 227 346-589 24-298 (386)
87 2ast_B S-phase kinase-associat 99.9 8.2E-24 2.8E-28 217.1 9.7 249 332-588 49-312 (336)
88 2xwt_C Thyrotropin receptor; s 99.9 9.5E-23 3.3E-27 197.8 14.4 196 355-556 32-236 (239)
89 2xwt_C Thyrotropin receptor; s 99.9 2.9E-22 1E-26 194.4 17.3 196 379-579 32-236 (239)
90 2ast_B S-phase kinase-associat 99.9 1.1E-23 3.6E-28 216.3 7.0 253 308-568 49-315 (336)
91 4glp_A Monocyte differentiatio 99.9 6.5E-23 2.2E-27 207.3 12.3 199 355-559 92-307 (310)
92 4glp_A Monocyte differentiatio 99.9 1.1E-22 3.8E-27 205.6 12.8 225 307-536 65-308 (310)
93 1h6u_A Internalin H; cell adhe 99.9 3.6E-22 1.2E-26 201.2 14.4 193 328-560 39-231 (308)
94 1h6u_A Internalin H; cell adhe 99.9 2.2E-21 7.6E-26 195.4 17.1 191 377-583 40-231 (308)
95 4ay9_X Follicle-stimulating ho 99.9 1.7E-21 5.8E-26 200.4 16.3 204 304-511 7-215 (350)
96 2o6s_A Variable lymphocyte rec 99.9 1.8E-21 6.3E-26 184.3 14.0 186 52-260 5-190 (208)
97 2v9t_B SLIT homolog 2 protein 99.8 1.5E-20 5.3E-25 179.1 15.2 162 430-594 15-177 (220)
98 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-20 6.7E-25 178.3 15.6 162 430-594 15-178 (220)
99 4ay9_X Follicle-stimulating ho 99.8 6.3E-20 2.1E-24 188.6 19.0 242 333-583 12-259 (350)
100 3cvr_A Invasion plasmid antige 99.8 3.3E-20 1.1E-24 200.2 15.4 198 55-283 49-254 (571)
101 2xot_A Amphoterin-induced prot 99.8 3.2E-20 1.1E-24 191.6 14.3 182 405-589 21-209 (361)
102 2o6s_A Variable lymphocyte rec 99.8 4.8E-20 1.6E-24 174.6 13.7 139 423-568 49-187 (208)
103 3cvr_A Invasion plasmid antige 99.8 1.4E-19 4.8E-24 195.3 16.1 187 331-569 60-253 (571)
104 3e6j_A Variable lymphocyte rec 99.8 2.3E-19 7.8E-24 172.2 14.9 160 430-593 23-184 (229)
105 3e6j_A Variable lymphocyte rec 99.8 5E-19 1.7E-23 169.8 15.8 158 52-226 17-174 (229)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-18 4.3E-23 165.8 15.7 156 405-563 14-170 (220)
107 1h6t_A Internalin B; cell adhe 99.8 1.4E-18 4.8E-23 173.2 15.7 172 87-273 43-214 (291)
108 2v9t_B SLIT homolog 2 protein 99.8 1.6E-18 5.3E-23 165.1 15.3 154 405-561 14-167 (220)
109 1h6t_A Internalin B; cell adhe 99.8 1E-18 3.5E-23 174.2 14.6 150 399-560 65-214 (291)
110 1m9s_A Internalin B; cell inva 99.8 1.9E-18 6.6E-23 188.7 17.4 174 86-274 39-212 (605)
111 2xot_A Amphoterin-induced prot 99.8 9.1E-19 3.1E-23 180.7 13.0 157 404-560 41-203 (361)
112 1w8a_A SLIT protein; signaling 99.8 1.1E-18 3.7E-23 162.4 11.7 153 453-608 11-166 (192)
113 1m9s_A Internalin B; cell inva 99.8 3.3E-18 1.1E-22 186.9 15.5 189 332-536 23-211 (605)
114 3sb4_A Hypothetical leucine ri 99.7 1.6E-18 5.6E-23 176.5 8.1 217 210-432 100-327 (329)
115 2wfh_A SLIT homolog 2 protein 99.7 1.2E-17 4E-22 155.3 12.9 140 453-596 13-153 (193)
116 3sb4_A Hypothetical leucine ri 99.7 4.2E-18 1.4E-22 173.4 10.8 219 329-552 100-327 (329)
117 4ezg_A Putative uncharacterize 99.7 1.1E-17 3.8E-22 156.5 12.8 153 399-559 41-194 (197)
118 1xeu_A Internalin C; cellular 99.7 6.7E-18 2.3E-22 165.5 11.0 167 68-250 21-187 (263)
119 4ezg_A Putative uncharacterize 99.7 1E-17 3.5E-22 156.8 11.7 153 87-248 41-194 (197)
120 4b8c_D Glucose-repressible alc 99.7 4.5E-19 1.5E-23 198.9 2.3 218 23-254 132-360 (727)
121 4fs7_A Uncharacterized protein 99.7 2.8E-16 9.5E-21 164.2 23.3 335 78-479 59-393 (394)
122 1xeu_A Internalin C; cellular 99.7 7.8E-18 2.7E-22 165.0 10.6 168 379-561 20-187 (263)
123 4fs7_A Uncharacterized protein 99.7 5.2E-16 1.8E-20 162.1 23.6 335 102-503 59-393 (394)
124 1dce_A Protein (RAB geranylger 99.7 2.7E-19 9.2E-24 194.4 -3.6 106 476-586 443-550 (567)
125 4fdw_A Leucine rich hypothetic 99.7 5.7E-16 1.9E-20 160.8 21.6 217 356-581 159-382 (401)
126 4fdw_A Leucine rich hypothetic 99.7 6.6E-16 2.2E-20 160.3 21.1 265 283-559 113-383 (401)
127 1w8a_A SLIT protein; signaling 99.7 7.7E-17 2.6E-21 149.9 12.4 138 451-588 30-168 (192)
128 1dce_A Protein (RAB geranylger 99.7 6.1E-19 2.1E-23 191.6 -5.1 187 233-441 347-548 (567)
129 4b8c_D Glucose-repressible alc 99.7 1.7E-17 5.9E-22 186.1 5.1 155 330-494 173-336 (727)
130 2o6r_A Variable lymphocyte rec 99.7 2.6E-16 8.9E-21 144.4 12.1 139 452-593 9-149 (177)
131 2ell_A Acidic leucine-rich nuc 99.6 4.7E-16 1.6E-20 141.4 10.0 131 427-559 25-160 (168)
132 2ell_A Acidic leucine-rich nuc 99.6 7E-16 2.4E-20 140.3 10.6 113 134-248 45-160 (168)
133 2je0_A Acidic leucine-rich nuc 99.6 6.2E-16 2.1E-20 137.5 8.3 126 450-577 17-148 (149)
134 2je0_A Acidic leucine-rich nuc 99.6 7E-16 2.4E-20 137.1 8.3 128 426-555 17-149 (149)
135 4gt6_A Cell surface protein; l 99.6 9.5E-14 3.2E-18 144.9 25.3 113 81-196 54-170 (394)
136 2wfh_A SLIT homolog 2 protein 99.6 9.6E-15 3.3E-19 135.6 14.6 126 70-199 14-139 (193)
137 2o6r_A Variable lymphocyte rec 99.6 1.9E-14 6.5E-19 131.9 15.5 133 52-199 5-137 (177)
138 3g39_A Variable lymphocyte rec 99.6 7E-15 2.4E-19 133.5 10.8 115 476-593 11-127 (170)
139 4gt6_A Cell surface protein; l 99.6 3.3E-13 1.1E-17 140.8 23.9 159 102-267 51-213 (394)
140 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-14 3.6E-19 133.4 9.9 65 494-559 60-126 (176)
141 1a9n_A U2A', U2A'; complex (nu 99.5 9.8E-15 3.3E-19 133.6 8.8 136 420-560 13-154 (176)
142 2r9u_A Variable lymphocyte rec 99.5 2.6E-14 8.8E-19 130.1 11.0 114 477-593 15-130 (174)
143 1ds9_A Outer arm dynein; leuci 99.5 2.5E-16 8.7E-21 147.3 -4.7 115 445-564 43-158 (198)
144 1ds9_A Outer arm dynein; leuci 99.5 4E-16 1.4E-20 146.0 -4.3 155 398-559 14-185 (198)
145 3g39_A Variable lymphocyte rec 99.5 1.9E-13 6.5E-18 124.0 11.0 109 452-563 11-119 (170)
146 2ifg_A High affinity nerve gro 99.4 1.6E-13 5.6E-18 140.7 10.4 128 478-607 12-144 (347)
147 2r9u_A Variable lymphocyte rec 99.4 4.2E-13 1.4E-17 122.0 11.0 108 453-563 15-122 (174)
148 4h09_A Hypothetical leucine ri 99.4 1.3E-10 4.3E-15 120.7 26.8 122 324-449 234-355 (379)
149 4h09_A Hypothetical leucine ri 99.4 1.8E-10 6.3E-15 119.4 26.0 302 109-459 41-342 (379)
150 3un9_A NLR family member X1; l 99.3 6.1E-14 2.1E-18 144.1 -0.6 165 402-566 72-259 (372)
151 3un9_A NLR family member X1; l 99.3 5.1E-13 1.7E-17 137.2 2.4 160 425-584 71-254 (372)
152 2ifg_A High affinity nerve gro 99.3 8.7E-12 3E-16 127.8 9.7 105 454-561 12-118 (347)
153 2ra8_A Uncharacterized protein 98.9 6.2E-10 2.1E-14 113.1 4.9 85 496-580 250-341 (362)
154 2ra8_A Uncharacterized protein 98.9 1.8E-09 6.1E-14 109.7 5.9 156 397-557 167-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 1.7E-08 5.9E-13 92.4 2.8 65 494-558 89-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 5.4E-09 1.8E-13 95.7 -1.0 93 83-175 29-136 (185)
157 3rw6_A Nuclear RNA export fact 98.4 7.4E-08 2.5E-12 92.4 3.4 41 496-536 168-210 (267)
158 3rw6_A Nuclear RNA export fact 98.4 5.9E-08 2E-12 93.2 2.3 80 471-552 167-257 (267)
159 3rfe_A Platelet glycoprotein I 98.0 7.1E-06 2.4E-10 69.5 6.8 69 525-595 11-81 (130)
160 3e4g_A ATP synthase subunit S, 98.0 1.3E-06 4.5E-11 77.4 1.3 34 91-124 62-95 (176)
161 3e4g_A ATP synthase subunit S, 98.0 2.2E-06 7.4E-11 76.0 2.2 84 474-557 61-150 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00011 3.8E-09 66.4 4.2 65 492-556 64-136 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 9.5E-05 3.3E-09 66.8 2.9 112 448-559 39-170 (197)
164 3rfe_A Platelet glycoprotein I 96.8 0.0015 5E-08 55.1 5.7 57 502-560 12-69 (130)
165 2ks1_B Epidermal growth factor 92.7 0.11 3.9E-06 33.1 3.4 25 625-649 13-37 (44)
166 4aw2_A Serine/threonine-protei 87.3 0.058 2E-06 56.1 -2.2 29 670-698 64-93 (437)
167 4aoj_A High affinity nerve gro 85.8 0.15 5.3E-06 50.5 0.1 16 683-698 45-60 (329)
168 2l2t_A Receptor tyrosine-prote 85.7 0.46 1.6E-05 30.3 2.2 23 625-647 12-34 (44)
169 2lz0_A Uncharacterized protein 85.6 2 7E-05 33.6 6.5 45 78-123 8-52 (100)
170 2lz0_A Uncharacterized protein 81.8 3.6 0.00012 32.1 6.4 48 100-148 6-53 (100)
171 4ase_A Vascular endothelial gr 81.6 0.3 1E-05 48.9 0.1 20 679-698 64-83 (353)
172 4g3f_A NF-kappa-beta-inducing 76.7 0.41 1.4E-05 47.3 -0.6 21 678-698 57-77 (336)
173 3dzo_A Rhoptry kinase domain; 76.2 0.34 1.2E-05 49.8 -1.4 23 676-698 75-97 (413)
174 2qol_A Ephrin receptor; recept 75.7 1.1 3.6E-05 45.4 2.1 20 679-698 45-64 (373)
175 4fih_A Serine/threonine-protei 75.2 0.68 2.3E-05 46.0 0.4 18 681-698 76-93 (346)
176 2vd5_A DMPK protein; serine/th 72.7 0.62 2.1E-05 47.8 -0.6 29 670-698 51-80 (412)
177 4fie_A Serine/threonine-protei 72.1 0.89 3E-05 46.5 0.4 20 679-698 151-170 (423)
178 4b99_A Mitogen-activated prote 72.1 0.83 2.9E-05 46.5 0.2 18 681-698 56-73 (398)
179 3p1a_A MYT1 kinase, membrane-a 71.8 0.62 2.1E-05 45.7 -0.8 21 678-698 56-76 (311)
180 3e7e_A HBUB1, BUB1A, mitotic c 71.1 0.72 2.5E-05 46.4 -0.5 23 676-698 62-84 (365)
181 3v8s_A RHO-associated protein 70.7 0.78 2.7E-05 47.0 -0.3 27 672-698 61-88 (410)
182 3v5w_A G-protein coupled recep 66.0 1.3 4.4E-05 48.2 0.1 20 679-698 189-208 (689)
183 2w4o_A Calcium/calmodulin-depe 65.7 1.4 4.7E-05 44.0 0.3 22 677-698 51-72 (349)
184 3kul_A Ephrin type-A receptor 64.4 1.4 4.9E-05 43.3 0.1 18 681-698 51-68 (325)
185 2psq_A Fibroblast growth facto 63.8 1.5 5.3E-05 44.1 0.2 20 679-698 81-100 (370)
186 1u5q_A Serine/threonine protei 62.8 1.5 5.2E-05 43.7 -0.1 21 678-698 53-73 (348)
187 1mqb_A Ephrin type-A receptor 62.8 1.7 5.8E-05 43.0 0.3 18 681-698 46-63 (333)
188 3l9p_A Anaplastic lymphoma kin 62.6 1.5 5.1E-05 44.1 -0.2 20 679-698 71-90 (367)
189 2i1m_A Macrophage colony-stimu 61.8 1.7 5.9E-05 42.8 0.1 23 676-698 43-65 (333)
190 3c1x_A Hepatocyte growth facto 61.8 1.8 6.2E-05 43.6 0.3 17 682-698 92-108 (373)
191 1luf_A Muscle-specific tyrosin 61.7 2 6.9E-05 42.5 0.6 23 676-698 44-66 (343)
192 1vzo_A Ribosomal protein S6 ki 61.2 1.8 6.1E-05 43.3 0.1 20 679-698 54-73 (355)
193 2vx3_A Dual specificity tyrosi 61.2 1.5 5.1E-05 44.4 -0.4 23 676-698 51-73 (382)
194 3i6u_A CDS1, serine/threonine- 61.1 2.2 7.4E-05 43.9 0.7 23 676-698 132-154 (419)
195 3an0_A Dual specificity mitoge 58.5 2.1 7.1E-05 42.4 0.0 21 678-698 50-70 (340)
196 3tt0_A Basic fibroblast growth 58.3 2.2 7.4E-05 43.2 0.1 20 679-698 69-88 (382)
197 4dc2_A Protein kinase C IOTA t 57.4 2.2 7.7E-05 43.3 0.1 20 679-698 52-71 (396)
198 1rjb_A FL cytokine receptor; k 57.4 2.3 7.8E-05 42.1 0.1 21 678-698 44-64 (344)
199 2zmd_A Dual specificity protei 57.0 2.1 7.2E-05 43.4 -0.2 20 679-698 56-75 (390)
200 3a99_A Proto-oncogene serine/t 56.8 2.2 7.4E-05 41.9 -0.2 19 680-698 44-62 (320)
201 1j1b_A Glycogen synthase kinas 56.7 2.3 7.7E-05 43.7 -0.1 18 681-698 56-73 (420)
202 1qcf_A Haematopoetic cell kina 56.7 2.5 8.5E-05 43.9 0.3 20 679-698 188-207 (454)
203 3kvw_A DYRK2, dual specificity 56.4 2.3 7.9E-05 43.8 -0.0 20 679-698 97-116 (429)
204 4exu_A Mitogen-activated prote 54.9 2.6 9E-05 42.3 0.1 19 680-698 43-61 (371)
205 2c30_A Serine/threonine-protei 54.4 2.2 7.7E-05 41.8 -0.5 18 681-698 47-64 (321)
206 3byv_A Rhoptry kinase; malaria 54.3 1.9 6.6E-05 43.5 -1.1 22 677-698 71-92 (377)
207 3q60_A ROP5B; pseudokinase, tr 53.8 2.2 7.6E-05 42.8 -0.7 22 677-698 60-81 (371)
208 3cbl_A C-FES, proto-oncogene t 53.1 2.5 8.6E-05 42.6 -0.4 19 680-698 115-133 (377)
209 1rdq_E PKA C-alpha, CAMP-depen 52.7 3.1 0.00011 41.4 0.3 18 681-698 43-60 (350)
210 2x4f_A Myosin light chain kina 51.6 2.4 8.2E-05 42.7 -0.8 17 682-698 92-108 (373)
211 3rp9_A Mitogen-activated prote 51.6 3.1 0.00011 43.2 0.0 20 679-698 53-72 (458)
212 4ejn_A RAC-alpha serine/threon 51.5 2.8 9.5E-05 43.4 -0.4 20 679-698 148-167 (446)
213 1fmk_A C-SRC, P60-SRC, tyrosin 51.2 3.4 0.00012 42.8 0.3 18 681-698 186-203 (452)
214 3c4z_A Rhodopsin kinase; Ser/T 51.0 3.5 0.00012 43.9 0.3 20 679-698 185-204 (543)
215 1kob_A Twitchin; kinase, intra 50.8 3.1 0.0001 42.2 -0.2 20 679-698 51-70 (387)
216 1zth_A RIO1 serine protein kin 50.8 4.7 0.00016 38.0 1.2 16 683-698 51-66 (258)
217 2owb_A Serine/threonine-protei 50.4 2.6 8.9E-05 41.6 -0.8 18 681-698 43-60 (335)
218 2jii_A Serine/threonine-protei 50.4 2.7 9.1E-05 41.9 -0.7 18 681-698 44-61 (352)
219 3uto_A Twitchin; kinase, muscl 50.1 3.1 0.00011 44.6 -0.3 20 679-698 157-176 (573)
220 2acx_A G protein-coupled recep 49.9 3.1 0.00011 44.5 -0.3 21 678-698 183-203 (576)
221 2y7j_A Phosphorylase B kinase 49.6 3.8 0.00013 41.0 0.3 23 676-698 91-113 (365)
222 3ttj_A Mitogen-activated prote 49.6 3.8 0.00013 42.7 0.3 21 678-698 61-81 (464)
223 4fl3_A Tyrosine-protein kinase 49.5 4 0.00014 44.4 0.5 15 684-698 374-388 (635)
224 3en9_A Glycoprotease, O-sialog 49.4 7 0.00024 41.5 2.3 19 680-698 337-355 (540)
225 1zar_A RIO2 kinase; serine kin 49.3 3.9 0.00013 39.2 0.3 22 677-698 88-109 (282)
226 1k9a_A Carboxyl-terminal SRC k 49.0 3.7 0.00013 42.6 0.1 19 680-698 194-212 (450)
227 1b6c_B TGF-B superfamily recep 47.7 3.8 0.00013 40.4 -0.1 22 677-698 40-61 (342)
228 1opk_A P150, C-ABL, proto-onco 46.2 3.4 0.00012 43.4 -0.7 18 681-698 222-239 (495)
229 2j0j_A Focal adhesion kinase 1 45.3 4.8 0.00017 44.0 0.3 20 679-698 390-409 (656)
230 2h8h_A Proto-oncogene tyrosine 45.1 4.6 0.00016 42.9 0.1 18 681-698 269-286 (535)
231 3pfq_A PKC-B, PKC-beta, protei 44.5 4.3 0.00015 44.6 -0.3 20 679-698 341-360 (674)
232 2w1i_A JAK2; chromosomal rearr 43.9 5.1 0.00018 39.2 0.2 16 683-698 45-60 (326)
233 2ozo_A Tyrosine-protein kinase 43.4 7.3 0.00025 42.2 1.3 13 686-698 343-355 (613)
234 1nxk_A MAP kinase-activated pr 43.1 6.2 0.00021 40.0 0.7 14 685-698 68-81 (400)
235 4gyi_A RIO2 kinase; protein ki 36.3 11 0.00037 37.9 1.2 18 681-698 97-114 (397)
236 1zza_A Stannin, AG8_1; helix, 36.1 25 0.00084 24.7 2.5 9 639-647 30-38 (90)
237 2pzi_A Probable serine/threoni 35.1 7.2 0.00025 42.9 -0.4 20 679-698 80-99 (681)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.1e-79 Score=697.52 Aligned_cols=595 Identities=34% Similarity=0.512 Sum_probs=475.3
Q ss_pred cccCCchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCcEEEEECCCCCCCcC---CC---------
Q 005401 16 LLTQSLNQDGLYLRRVKLGLSDPTDSLASWDDTRVDTPCHWRGVSCDPLTQRVTSVNLSQSQLSGP---FP--------- 83 (698)
Q Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~C~w~g~~c~~~~~~v~~L~l~~~~l~~~---~~--------- 83 (698)
+++++.++|+.||++||+++.||. .+.+|+.+. +||.|+||+|+ .++|++|+|+++.+.|. ++
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~--~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKN-LLPDWSSNK--NPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTS--CGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred ccccCCHHHHHHHHHHHhhCCCcc-cccCCCCCC--CCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence 445667889999999999999988 899998554 79999999998 57999999999988875 32
Q ss_pred --------------ccccCCCCCCEEECCCCCCcccCCc--CCcCCCCCCEEECCCCCCcccCcccc-CCCCCCCEEECC
Q 005401 84 --------------IFFCRLPYLAQLSLYNNYINSSLPL--DISTCRNLTDLNLGSNLLVGAIPATL-SQLKNLKSLELQ 146 (698)
Q Consensus 84 --------------~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~ 146 (698)
..|.++++|++|+|++|.+.+.+|. .+.++++|++|++++|.+.+..|..+ .++++|++|+++
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence 5678889999999999998887777 78888888888888887776666544 555666666666
Q ss_pred CCcCcccCCcC-------------------------ccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCC
Q 005401 147 ENNFTGDIPAS-------------------------FGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPG 201 (698)
Q Consensus 147 ~n~l~~~~~~~-------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~ 201 (698)
+|.+++..+.. +..+++|++|++++|.+++.+|. ++++++|++|++++|.++ +
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~-~ 237 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS-G 237 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC-S
T ss_pred CCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC-C
Confidence 65555433322 24567777777777777766665 777788888888887776 5
Q ss_pred CCcccccCCCCCCEEEcccCCCCCcCC----------------------ccccCC-CCCCEEEccCCCCcccCCccccCC
Q 005401 202 QLPSQLSNLTNLEYLWLSGCNLLGEIP----------------------ESLTRL-TKLKNLDLSFNGLTGSIPSSITEM 258 (698)
Q Consensus 202 ~~~~~l~~l~~L~~L~l~~n~l~~~~~----------------------~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l 258 (698)
.+|..+.++++|++|++++|.+.+..| ..+... ++|++|++++|.+++..|..+..+
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 317 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence 566677777777777777766655443 333332 555555555555555555555555
Q ss_pred CCCceeeccCCcceeccCcc-cccccccceeccCCCccccccCcccccc--cccEEEccCccccccCChhccC--CCCCC
Q 005401 259 KSIEQIELFKNSLSGELPVK-WVNMTTLLRFDASMNQLTGTIPNELCEL--QLESLNLYENRLEGTLPESIAR--SKNLS 333 (698)
Q Consensus 259 ~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~--~~~L~ 333 (698)
++|++|++++|.+.+.+|.. +..+++|+.|++++|.+++.+|..+... +|++|++++|.+.+.+|..+.. +++|+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 55555555555555555543 5555555666666665555555555444 5666666666666655655554 66788
Q ss_pred EEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCcc
Q 005401 334 ELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNL 413 (698)
Q Consensus 334 ~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 413 (698)
+|++++|++++..|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence 88888888888888888899999999999999998899999999999999999999999999999999999999999999
Q ss_pred CcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccch
Q 005401 414 LSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGS 493 (698)
Q Consensus 414 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 493 (698)
+++..|..+..+++|++|++++|++++.+|.++..+++|++|++++|++++.+|..+..+++|+.|++++|++.+.+|..
T Consensus 478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777654
Q ss_pred h----------------------------------------------------------------------ccCCCCCeE
Q 005401 494 L----------------------------------------------------------------------AKLSQLGNL 503 (698)
Q Consensus 494 ~----------------------------------------------------------------------~~l~~L~~L 503 (698)
+ ..+++|++|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 3 335789999
Q ss_pred EcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCc
Q 005401 504 DLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLS 582 (698)
Q Consensus 504 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~ 582 (698)
||++|++++.+|..++++++|++|+|++|+++|.+|..|+++++|++|||++|+++|.+|..+..++ |++|++++|+++
T Consensus 638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred ccCChh-hhhhcCCcccCCCCCCCCCCCCCCCCCCC
Q 005401 583 GELPPL-YAKEMYRGSFLGNPGLCGDLAGLCPKTGR 617 (698)
Q Consensus 583 ~~~~~~-~~~~~~~~~~~~n~~~c~~~~~~c~~~~~ 617 (698)
|.+|.. .+..+....|.|||++||.+...|+...+
T Consensus 718 g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~ 753 (768)
T 3rgz_A 718 GPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 753 (768)
T ss_dssp EECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-
T ss_pred ccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCcc
Confidence 999977 78888889999999999998778986543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-64 Score=576.39 Aligned_cols=517 Identities=31% Similarity=0.500 Sum_probs=431.0
Q ss_pred CcEEEEECCCCCCCcCCCccc-cCCCCCCEEECCCCCCcccCCcC---CcCCCCCCEEECCCCCCcc-------------
Q 005401 66 QRVTSVNLSQSQLSGPFPIFF-CRLPYLAQLSLYNNYINSSLPLD---ISTCRNLTDLNLGSNLLVG------------- 128 (698)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~---~~~l~~L~~L~Ls~n~l~~------------- 128 (698)
.++++|++++|.+.+..+..+ .++++|++|+|++|.+++..+.. +.++++|++|++++|.+.+
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L 205 (768)
T 3rgz_A 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205 (768)
T ss_dssp TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEE
T ss_pred CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEE
Confidence 468888888888877766654 67788888888888777666554 5555555555555555444
Q ss_pred ---------cCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCC
Q 005401 129 ---------AIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQ 199 (698)
Q Consensus 129 ---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~ 199 (698)
.+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|.. .+++|++|++++|.++
T Consensus 206 ~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~ 282 (768)
T 3rgz_A 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 282 (768)
T ss_dssp ECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEE
T ss_pred ECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccC
Confidence 3333 444444444444444444444444444444444554444444433332 4455555555555554
Q ss_pred CCCCcccccCC-CCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCcc-ccCCCCCceeeccCCcceeccCc
Q 005401 200 PGQLPSQLSNL-TNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSS-ITEMKSIEQIELFKNSLSGELPV 277 (698)
Q Consensus 200 ~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~ 277 (698)
+.+|..+... ++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.+|.
T Consensus 283 -~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~ 361 (768)
T 3rgz_A 283 -GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361 (768)
T ss_dssp -ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred -CccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence 4567777664 99999999999999999999999999999999999999888866 89999999999999999999999
Q ss_pred cccccc-ccceeccCCCccccccCccccc--c-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCC
Q 005401 278 KWVNMT-TLLRFDASMNQLTGTIPNELCE--L-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKY 353 (698)
Q Consensus 278 ~~~~~~-~L~~L~l~~n~l~~~~~~~~~~--~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 353 (698)
.+..++ +|+.|++++|.+++.+|..+.. . +|++|++++|.+++.+|..+..+++|++|++++|++++..|..+..+
T Consensus 362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 441 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441 (768)
T ss_dssp THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC
Confidence 999988 9999999999999988888776 3 79999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEc
Q 005401 354 SPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFEL 433 (698)
Q Consensus 354 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 433 (698)
++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|..+..+++|++|++
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccchhhhcCCCCCeeeccCccceeecCccc-------------------------------------------
Q 005401 434 ADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEV------------------------------------------- 470 (698)
Q Consensus 434 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~------------------------------------------- 470 (698)
++|++++.+|..+..+++|+.|++++|++++.+|..+
T Consensus 522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (768)
T 3rgz_A 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601 (768)
T ss_dssp CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999987777543
Q ss_pred ---------------------------cccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCC
Q 005401 471 ---------------------------GLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKN 523 (698)
Q Consensus 471 ---------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 523 (698)
..+++|+.|++++|++++.+|..++.+++|+.|+|++|+++|.+|+.++++++
T Consensus 602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~ 681 (768)
T 3rgz_A 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681 (768)
T ss_dssp GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC
Confidence 33567999999999999999999999999999999999999999999999999
Q ss_pred CCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccccCeEEcccCcCcccCC
Q 005401 524 INELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLRLNVLNLSNNRLSGELP 586 (698)
Q Consensus 524 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~~ 586 (698)
|++|||++|+++|.+|..++.+++|++||+++|+++|.+|..-...++....+.+|+.-|..|
T Consensus 682 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp CCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC
Confidence 999999999999999999999999999999999999999976332235666677887655433
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.6e-61 Score=542.40 Aligned_cols=541 Identities=23% Similarity=0.203 Sum_probs=402.3
Q ss_pred CcccccccCC--CCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCc
Q 005401 54 CHWRGVSCDP--LTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIP 131 (698)
Q Consensus 54 C~w~g~~c~~--~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 131 (698)
|++.+.+..+ .+.++++|++++|.+++..+..|.++++|++|+|++|.+++..|.+|.++++|++|++++|.+....+
T Consensus 11 cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 11 CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp CCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh
Confidence 4444444333 34689999999999999888899999999999999999999999999999999999999999997777
Q ss_pred cccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCccccc--C
Q 005401 132 ATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLS--N 209 (698)
Q Consensus 132 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~--~ 209 (698)
..|.++++|++|++++|.+++..+.+|+++++|++|++++|.+++..+..+.++++|++|++++|.++ ...+..+. .
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~ 169 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFA 169 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CBCHHHHGGGT
T ss_pred hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-ccCHHHhhccc
Confidence 78999999999999999999888888999999999999999999888888999999999999999887 33344333 5
Q ss_pred CCCCCEEEcccCCCCCcCCccccCC---------------------------CCCCEEEccCCCCcccCCccccCCCC--
Q 005401 210 LTNLEYLWLSGCNLLGEIPESLTRL---------------------------TKLKNLDLSFNGLTGSIPSSITEMKS-- 260 (698)
Q Consensus 210 l~~L~~L~l~~n~l~~~~~~~l~~l---------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~-- 260 (698)
+++|++|++++|.+++..+..+..+ ++|+.|++++|.+.+..|..+..++.
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp TCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSC
T ss_pred cccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCC
Confidence 5788888888888887766655433 44566666666666666666665543
Q ss_pred CceeeccCCcceeccCcccccccccceeccCCCccccccCcccccc-cccEEEccCccccc-----cCCh----hccCCC
Q 005401 261 IEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEG-----TLPE----SIARSK 330 (698)
Q Consensus 261 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~-----~~~~----~~~~~~ 330 (698)
|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+ +|+.|++++|...+ .+|. .+..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 7777777776666666666666777777777776666555554444 45555554433221 1111 334444
Q ss_pred CCCEEEccCCcCCcCCCccccCCC----------------------------CCCEEEcccCccceecCcccCCCCCCCE
Q 005401 331 NLSELKLFNNKLRGGLPSELGKYS----------------------------PLTTLDLSYNQFSGEIPEGLCEKGSLED 382 (698)
Q Consensus 331 ~L~~L~l~~n~l~~~~~~~l~~~~----------------------------~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 382 (698)
+|++|++++|++++..+..|..++ +|+.|++++|++++..|..+..+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 444444444444444444444443 4555666666666666777777777888
Q ss_pred EecccCcCcccCC-ccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccc--cccchhhhcCCCCCeeeccC
Q 005401 383 LVLIYNSFSGKIP-QSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFT--GKISKSISGANNLSSLLVSR 459 (698)
Q Consensus 383 L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~ 459 (698)
|++++|.+.+.+| ..|.++++|++|++++|++++..+..|..+++|+.|++++|.+. +..|..+..+++|+.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 8888887776554 56777778888888888777777777777888888888887776 45677788888888888888
Q ss_pred ccceeecCccccccCCceEEECCCCccccccc--------chhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCC
Q 005401 460 NNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIP--------GSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLAN 531 (698)
Q Consensus 460 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 531 (698)
|++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|+|++|+++...+..|.++++|++|+|++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence 88887777778888888888888888875422 2367788888888888888855556788888888888888
Q ss_pred CcCcccCCcccCCCCCCCEEeCCCCcCcccCccccc-ccc-cCeEEcccCcCcccCCh-hhhhhcCC
Q 005401 532 NRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQ-NLR-LNVLNLSNNRLSGELPP-LYAKEMYR 595 (698)
Q Consensus 532 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~-L~~L~ls~N~l~~~~~~-~~~~~~~~ 595 (698)
|++++..+..|.++++|+.|++++|++++..|..+. .++ |+.+++++|+|.|.|+. .|+..|..
T Consensus 570 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~ 636 (680)
T 1ziw_A 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSS
T ss_pred CCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHH
Confidence 888866666778888888888888888887777766 455 88888888888888885 56666654
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.3e-59 Score=522.71 Aligned_cols=523 Identities=22% Similarity=0.201 Sum_probs=388.6
Q ss_pred CcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEEC
Q 005401 66 QRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLEL 145 (698)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 145 (698)
..+++|++++|.+++..+..|.++++|++|+|++|.+.+..|.+|.++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCC--EEEcccCCC
Q 005401 146 QENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLE--YLWLSGCNL 223 (698)
Q Consensus 146 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~--~L~l~~n~l 223 (698)
++|.+++..+..|.++++|++|++++|.+++.....+..+++|++|++++|.++ ...+..++.+++|+ +|++++|.+
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCcc
Confidence 555555444455555555555555555555433333333555555555555554 23344455555555 555555555
Q ss_pred CCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcc-----eeccCccccccc--ccceeccCCCccc
Q 005401 224 LGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSL-----SGELPVKWVNMT--TLLRFDASMNQLT 296 (698)
Q Consensus 224 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~-----~~~~~~~~~~~~--~L~~L~l~~n~l~ 296 (698)
.+..+..+.. .+|+.|++++|.. .+..+..+..+....+....+ ....+..+..+. +++.+++++|.++
T Consensus 192 ~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 192 AGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp CEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 5544443332 4555555555541 122222222222221111111 111122333333 7899999999999
Q ss_pred cccCcccccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCc-cc
Q 005401 297 GTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPE-GL 374 (698)
Q Consensus 297 ~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~-~~ 374 (698)
+..+..+..+ +|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.++. .+
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 8777778777 8999999999998 7888899999999999999999988888999999999999999999866655 48
Q ss_pred CCCCCCCEEecccCcCcccC--CccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccch-hhhcCCC
Q 005401 375 CEKGSLEDLVLIYNSFSGKI--PQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISK-SISGANN 451 (698)
Q Consensus 375 ~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~ 451 (698)
..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..|..+++|+.|++++|++.+..+. .+..+++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 89999999999999998776 77899999999999999999999999999999999999999999877654 4889999
Q ss_pred CCeeeccCccceeecCccccccCCceEEECCCCccccc---ccchhccCCCCCeEEcccCccccccchhhhccCCCCEEe
Q 005401 452 LSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQ---IPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELN 528 (698)
Q Consensus 452 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 528 (698)
|++|++++|.+.+..|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..|..|..+++|++|+
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence 99999999999988899999999999999999999873 336789999999999999999999999999999999999
Q ss_pred CCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhcCC
Q 005401 529 LANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMYR 595 (698)
Q Consensus 529 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~~ 595 (698)
|++|++++..|..|..++.| +|++++|++++..|..+..++ |+.+++++|++.|.|+..|+..|..
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~ 573 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYK 573 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHH
T ss_pred CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHH
Confidence 99999999999999999999 999999999999999888887 9999999999999999876665543
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.5e-57 Score=511.90 Aligned_cols=533 Identities=22% Similarity=0.219 Sum_probs=430.9
Q ss_pred EEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCc
Q 005401 70 SVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENN 149 (698)
Q Consensus 70 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 149 (698)
.++.++++++. +|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 8 ~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eeECCCCCccc-cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 46667777764 444443 789999999999999888899999999999999999999999999999999999999999
Q ss_pred CcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCc
Q 005401 150 FTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPE 229 (698)
Q Consensus 150 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 229 (698)
+++..+.+|+++++|++|++++|.+++..+..|+++++|++|++++|.++ ...+..++++++|++|++++|.+++..+.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS-CCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc-ccCchhhcccccCCEEEccCCcccccCHH
Confidence 99776678999999999999999999888899999999999999999998 56677889999999999999999988776
Q ss_pred ccc--CCCCCCEEEccCCCCcccCCccccCC---------------------------CCCceeeccCCcceeccCcccc
Q 005401 230 SLT--RLTKLKNLDLSFNGLTGSIPSSITEM---------------------------KSIEQIELFKNSLSGELPVKWV 280 (698)
Q Consensus 230 ~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l---------------------------~~L~~L~l~~n~~~~~~~~~~~ 280 (698)
.+. .+++|+.|++++|.+++..|..+..+ ++|++|++++|.+.+..+..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 654 56899999999999998877766554 4577788888888888888888
Q ss_pred cccc--cceeccCCCccccccCcccccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCc-----CCC----c
Q 005401 281 NMTT--LLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRG-----GLP----S 348 (698)
Q Consensus 281 ~~~~--L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~----~ 348 (698)
.++. |+.|++++|.+++..+..+..+ +|++|++++|.+.+..|..+.++++|+.|++++|...+ .+| .
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 7765 9999999999988777777776 89999999999998888889999999999998875543 222 2
Q ss_pred cccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCc----------------------------CcccCCccccC
Q 005401 349 ELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNS----------------------------FSGKIPQSLGK 400 (698)
Q Consensus 349 ~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~----------------------------l~~~~~~~~~~ 400 (698)
.+..+++|++|++++|.+++..+..|..+++|++|++++|. +.+..|..|..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 67788999999999999998888878887777777776654 34444555566
Q ss_pred CCCCcEEEccCccCcCccC-ccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccce--eecCccccccCCce
Q 005401 401 CRSLRRVRLRHNLLSGSVP-EMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFS--GSIPDEVGLLSNLV 477 (698)
Q Consensus 401 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~ 477 (698)
+++|++|++++|.+++.++ ..|.++++|++|++++|++.+..+..|..+++|+.|++++|.+. +..|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 6666666666666655433 45666666666666666666666666666666677777666664 35677788888889
Q ss_pred EEECCCCcccccccchhccCCCCCeEEcccCccccccc--------hhhhccCCCCEEeCCCCcCcccCCcccCCCCCCC
Q 005401 478 EFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIP--------EGIESWKNINELNLANNRLSGEIPSEIGNLPVLN 549 (698)
Q Consensus 478 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 549 (698)
.|++++|.+++..+..+..+++|++|+|++|++++..+ ..+.++++|++|+|++|+++...+..|.++++|+
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 99999998887777788888999999999998886532 2367889999999999999855455789999999
Q ss_pred EEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhh---hhhcCCcccCCCCCCCC
Q 005401 550 YLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLY---AKEMYRGSFLGNPGLCG 606 (698)
Q Consensus 550 ~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~---~~~~~~~~~~~n~~~c~ 606 (698)
+|||++|++++..+..|..++ |+.|++++|++++..|..+ +.......+.+||+.|.
T Consensus 564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 999999999988887788877 9999999999998766542 23344456789999985
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-57 Score=508.52 Aligned_cols=519 Identities=20% Similarity=0.181 Sum_probs=376.1
Q ss_pred CcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEEC
Q 005401 66 QRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLEL 145 (698)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 145 (698)
.++++|++++|.+++..+..|.++++|++|+|++|.+++..|.+|.++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCcCcccCCcCccCCCCccEEEccCcccCC-ccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCC----CEEEccc
Q 005401 146 QENNFTGDIPASFGEFTQLESLSLFNNLLNG-TISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNL----EYLWLSG 220 (698)
Q Consensus 146 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L----~~L~l~~ 220 (698)
++|.+++..+..|+++++|++|++++|.+++ .+|..++++++|++|++++|.++ ...+..++.+++| .+|++++
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC-EECTTTTHHHHHCTTCCCEEECTT
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce-ecChhhhhhhhccccccceeeccC
Confidence 5555554444555555555555555555553 33555555555555555555554 2223333333332 2555555
Q ss_pred CCCCCcCCccccCCCCCCEEEccCCCCc-ccCCccccCCCCCceeeccCCcceec------cCccccccc--ccceecc-
Q 005401 221 CNLLGEIPESLTRLTKLKNLDLSFNGLT-GSIPSSITEMKSIEQIELFKNSLSGE------LPVKWVNMT--TLLRFDA- 290 (698)
Q Consensus 221 n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~------~~~~~~~~~--~L~~L~l- 290 (698)
|.+++..+..+... +|+.|++++|.+. +..|..+.+++.++.+++..+.+.+. .+..+..+. .++.+++
T Consensus 191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 55554444333332 5555555555554 23344455555555554433322110 001111111 2334444
Q ss_pred CCCccccccCcccccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCcccee
Q 005401 291 SMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGE 369 (698)
Q Consensus 291 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~ 369 (698)
..+.+.+..|. +..+ +++.|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+.
T Consensus 270 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 270 YTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred ccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc
Confidence 56677777776 5555 8999999999997 455 788899999999999999 4667 45 899999999999966555
Q ss_pred cCcccCCCCCCCEEecccCcCccc--CCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccc-hhh
Q 005401 370 IPEGLCEKGSLEDLVLIYNSFSGK--IPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKIS-KSI 446 (698)
Q Consensus 370 ~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~ 446 (698)
. .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++ .|..|..+++|+.|++++|.+.+..+ ..+
T Consensus 344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred h--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh
Confidence 4 577899999999999999876 48889999999999999999885 55889999999999999999998877 688
Q ss_pred hcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccc-cccchhccCCCCCeEEcccCccccccchhhhccCCCC
Q 005401 447 SGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAG-QIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNIN 525 (698)
Q Consensus 447 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 525 (698)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+..+++|++|+|++|.+++..|..+.++++|+
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 999999999999999999999999999999999999999998 4788999999999999999999999999999999999
Q ss_pred EEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc--cCeEEcccCcCcccCChhhhhhcCCc
Q 005401 526 ELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR--LNVLNLSNNRLSGELPPLYAKEMYRG 596 (698)
Q Consensus 526 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~--L~~L~ls~N~l~~~~~~~~~~~~~~~ 596 (698)
+|+|++|++++.+|..|.++++|++||+++|+++ .+|..+..++ |++|++++|++.|.|+..|+..|...
T Consensus 501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~ 572 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKE 572 (606)
T ss_dssp EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTT
T ss_pred EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHc
Confidence 9999999999988999999999999999999999 5666677774 99999999999999998887777643
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-57 Score=524.56 Aligned_cols=525 Identities=21% Similarity=0.185 Sum_probs=446.2
Q ss_pred CcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCccc-CCcCCcCCCCCCEEECCCCCCcccCcc
Q 005401 54 CHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSS-LPLDISTCRNLTDLNLGSNLLVGAIPA 132 (698)
Q Consensus 54 C~w~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 132 (698)
|.|..|.+ .+.++++|+|++|.+++..+..|.++++|++|+|++|...+. .|.+|.++++|++|+|++|.+.+..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45666665 567899999999999999899999999999999999955444 488899999999999999999999999
Q ss_pred ccCCCCCCCEEECCCCcCcccCCcC--ccCCCCccEEEccCcccCCccC-ccccCcCCCcEeeccCCCCCCCCCcccccC
Q 005401 133 TLSQLKNLKSLELQENNFTGDIPAS--FGEFTQLESLSLFNNLLNGTIS-SSLGNISTLKELRLAYNPFQPGQLPSQLSN 209 (698)
Q Consensus 133 ~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~ 209 (698)
.|.++++|++|+|++|.+++..+.. |.++++|++|++++|.+++..+ ..|+++++|++|++++|.++ ...+..+..
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~-~~~~~~l~~ 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEP 170 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC-CCCSGGGHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC-eeCHHHccc
Confidence 9999999999999999999766654 8999999999999999987755 57899999999999999988 566777777
Q ss_pred C--CCCCEEEcccCCCCCcCCccccCCCC------CCEEEccCCCCcccCCccccCC---CCCceeeccCC---------
Q 005401 210 L--TNLEYLWLSGCNLLGEIPESLTRLTK------LKNLDLSFNGLTGSIPSSITEM---KSIEQIELFKN--------- 269 (698)
Q Consensus 210 l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n--------- 269 (698)
+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+.+..+..+... ..++.+.+..+
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 6 89999999999999888877777665 9999999999887777766543 56777777633
Q ss_pred cceeccCcccccc--cccceeccCCCccccccCcccccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCC
Q 005401 270 SLSGELPVKWVNM--TTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGL 346 (698)
Q Consensus 270 ~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 346 (698)
.+.+.....+..+ ++|+.|++++|.+.+..+..+..+ +|+.|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 2222333344443 789999999999998888888777 8999999999999888889999999999999999999888
Q ss_pred CccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCC
Q 005401 347 PSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLP 426 (698)
Q Consensus 347 ~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 426 (698)
+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+. ..+++|+.|++++|+++.. |. ...
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l-~~---~~~ 401 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTL-PK---INL 401 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCC-CC---CCT
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccc-cc---ccc
Confidence 88999999999999999999888888899999999999999998743 3378999999999999844 33 256
Q ss_pred CCCEEEccCCccccccc-hhhhcCCCCCeeeccCccceeecCc-cccccCCceEEECCCCccc-----ccccchhccCCC
Q 005401 427 HMYLFELADNSFTGKIS-KSISGANNLSSLLVSRNNFSGSIPD-EVGLLSNLVEFSGDGNKFA-----GQIPGSLAKLSQ 499 (698)
Q Consensus 427 ~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~ 499 (698)
+++.++++.|++.+... ..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.+. +..+..|..+++
T Consensus 402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~ 481 (844)
T 3j0a_A 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481 (844)
T ss_dssp TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCC
T ss_pred ccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccc
Confidence 89999999999987533 3456899999999999999865443 4566899999999999997 444567889999
Q ss_pred CCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccccCeEEcccC
Q 005401 500 LGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLRLNVLNLSNN 579 (698)
Q Consensus 500 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N 579 (698)
|++|+|++|.+++..|..|.++++|++|+|++|++++..|..+. ++|+.|||++|++++..|..+.. |+.+++++|
T Consensus 482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~--L~~l~l~~N 557 (844)
T 3j0a_A 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVS--LSVLDITHN 557 (844)
T ss_dssp EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSS--CCEEEEEEE
T ss_pred ccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCC--cCEEEecCC
Confidence 99999999999999999999999999999999999987777766 89999999999999999988753 899999999
Q ss_pred cCcccCChhhhhhcC
Q 005401 580 RLSGELPPLYAKEMY 594 (698)
Q Consensus 580 ~l~~~~~~~~~~~~~ 594 (698)
++.|.|+..|+..|.
T Consensus 558 p~~C~c~~~~f~~~~ 572 (844)
T 3j0a_A 558 KFICECELSTFINWL 572 (844)
T ss_dssp CCCCSSSCCSHHHHH
T ss_pred CcccccccHHHHHHH
Confidence 999999977666553
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.7e-56 Score=496.84 Aligned_cols=527 Identities=20% Similarity=0.187 Sum_probs=454.6
Q ss_pred EEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCc
Q 005401 70 SVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENN 149 (698)
Q Consensus 70 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 149 (698)
.++.++..++. +|..+. +++++|+|++|.+++..|.+|.++++|++|++++|.+.++.|.+|.++++|++|++++|.
T Consensus 16 ~~~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLNE-IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCSS-CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCccc-CcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 34555555653 344443 379999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCc
Q 005401 150 FTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPE 229 (698)
Q Consensus 150 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 229 (698)
+++..|.+|+++++|++|++++|.+++..+..+.++++|++|++++|.+.....|..+ .+++|++|++++|.+++..+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHH
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccccc-CCcccCEEEcccCcccccChh
Confidence 9999999999999999999999999988888899999999999999999844545544 499999999999999988888
Q ss_pred cccCCCCCC--EEEccCCCCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCC--------Ccccccc
Q 005401 230 SLTRLTKLK--NLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASM--------NQLTGTI 299 (698)
Q Consensus 230 ~l~~l~~L~--~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~--------n~l~~~~ 299 (698)
.+..+++|+ .|++++|.+.+..|..+.. .+|++|++++|.. .+..+..+..+....+.. ..+....
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhH
Confidence 999999999 9999999999877766554 6899999999862 233334443333222221 1222233
Q ss_pred CcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCC
Q 005401 300 PNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGS 379 (698)
Q Consensus 300 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~ 379 (698)
...+...+++.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..|..+..+++
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred hchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCc
Confidence 33344448999999999999888888999999999999999998 67888999999999999999999888889999999
Q ss_pred CCEEecccCcCcccCCc-cccCCCCCcEEEccCccCcCcc--CccccCCCCCCEEEccCCccccccchhhhcCCCCCeee
Q 005401 380 LEDLVLIYNSFSGKIPQ-SLGKCRSLRRVRLRHNLLSGSV--PEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLL 456 (698)
Q Consensus 380 L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 456 (698)
|++|++++|.+.+.++. .+..+++|++|++++|.+++.. +..+..+++|++|++++|++.+..+..+..+++|++|+
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 99999999999866654 5899999999999999999876 77899999999999999999999999999999999999
Q ss_pred ccCccceeecCc-cccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccc---cchhhhccCCCCEEeCCCC
Q 005401 457 VSRNNFSGSIPD-EVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGG---IPEGIESWKNINELNLANN 532 (698)
Q Consensus 457 l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N 532 (698)
+++|++.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. .+..+..+++|++|+|++|
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 999999977664 488999999999999999999999999999999999999999873 3367899999999999999
Q ss_pred cCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChh--hhhhcCCcccCCCCCCCC
Q 005401 533 RLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL--YAKEMYRGSFLGNPGLCG 606 (698)
Q Consensus 533 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~--~~~~~~~~~~~~n~~~c~ 606 (698)
++++..|..|..+++|++|+|++|++++..|..+..++ | .|++++|++++..|.. ...........+||..|.
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 99999999999999999999999999999999999988 9 9999999999877754 333445556789998873
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.9e-55 Score=489.59 Aligned_cols=487 Identities=19% Similarity=0.216 Sum_probs=428.6
Q ss_pred CCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEE
Q 005401 65 TQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLE 144 (698)
Q Consensus 65 ~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 144 (698)
..++++|++++|.+++..+.+|.++++|++|+|++|.+++..|.+|.++++|++|++++|.+.+..+..|.++++|++|+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 36899999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred CCCCcCcc-cCCcCccCCCCccEEEccCcccCCccCccccCcCCCc----EeeccCCCCCCCCCcccccCCCCCCEEEcc
Q 005401 145 LQENNFTG-DIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLK----ELRLAYNPFQPGQLPSQLSNLTNLEYLWLS 219 (698)
Q Consensus 145 L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~ 219 (698)
+++|.+.+ .+|..|+++++|++|++++|.+++..+..++.+.+|+ +|++++|.++ .++.......+|++|+++
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~--~~~~~~~~~~~L~~L~L~ 212 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID--FIQDQAFQGIKLHELTLR 212 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC--EECTTTTTTCEEEEEEEE
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc--eeCcccccCceeeeeecc
Confidence 99999986 5699999999999999999999998888888887766 8999999988 445544555599999999
Q ss_pred cCCCC-CcCCccccCCCCCCEEEccCCCCccc------CCccccCCC--CCceeec-cCCcceeccCcccccccccceec
Q 005401 220 GCNLL-GEIPESLTRLTKLKNLDLSFNGLTGS------IPSSITEMK--SIEQIEL-FKNSLSGELPVKWVNMTTLLRFD 289 (698)
Q Consensus 220 ~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~------~~~~~~~l~--~L~~L~l-~~n~~~~~~~~~~~~~~~L~~L~ 289 (698)
+|.+. +..+..+..++.|+.+++..+.+.+. .+..+..+. .++.+++ ..+.+.+..|. +..+++|+.++
T Consensus 213 ~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~ 291 (606)
T 3vq2_A 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMS 291 (606)
T ss_dssp SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEE
T ss_pred CCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEE
Confidence 99987 45677889999999998866554321 111222222 4666777 66778877777 89999999999
Q ss_pred cCCCccccccCcccccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccce
Q 005401 290 ASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSG 368 (698)
Q Consensus 290 l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~ 368 (698)
++++.+. .+| .+... +|++|++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|.+++
T Consensus 292 l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 292 LAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp EESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred ecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence 9999997 455 55555 899999999999 5777 44 8999999999999665433 57789999999999999987
Q ss_pred e--cCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccC-ccccCCCCCCEEEccCCccccccchh
Q 005401 369 E--IPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVP-EMFWGLPHMYLFELADNSFTGKISKS 445 (698)
Q Consensus 369 ~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 445 (698)
. .+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..+ ..|..+++|+.|++++|.+.+..+..
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 443 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred CcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh
Confidence 6 48889999999999999999985 56889999999999999999998877 68999999999999999999999999
Q ss_pred hhcCCCCCeeeccCcccee-ecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCC
Q 005401 446 ISGANNLSSLLVSRNNFSG-SIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNI 524 (698)
Q Consensus 446 ~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 524 (698)
+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|+|++|++++..|..+.++++|
T Consensus 444 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 9999999999999999987 478899999999999999999999999999999999999999999999999999999999
Q ss_pred CEEeCCCCcCcccCCcccCCCC-CCCEEeCCCCcCcccCc
Q 005401 525 NELNLANNRLSGEIPSEIGNLP-VLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 525 ~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p 563 (698)
++|+|++|+++ .+|..+..++ +|++|++++|.+.+..+
T Consensus 524 ~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 524 STLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999 6777799997 59999999999997554
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7e-55 Score=502.04 Aligned_cols=521 Identities=19% Similarity=0.173 Sum_probs=445.4
Q ss_pred EEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCccc-CccccCCCCCCCEEECCCC
Q 005401 70 SVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGA-IPATLSQLKNLKSLELQEN 148 (698)
Q Consensus 70 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n 148 (698)
..+.++++++.... -.++|++|+|++|.+++..+.+|.++++|++|++++|...+. .|.+|.++++|++|+|++|
T Consensus 8 ~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 45666777776543 457999999999999999999999999999999999965544 4889999999999999999
Q ss_pred cCcccCCcCccCCCCccEEEccCcccCCccCcc--ccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCc
Q 005401 149 NFTGDIPASFGEFTQLESLSLFNNLLNGTISSS--LGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGE 226 (698)
Q Consensus 149 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 226 (698)
.+.+..|.+|.++++|++|++++|.+++..+.. +.++++|++|++++|.++....+..++++++|++|++++|.+++.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 999999999999999999999999999866654 899999999999999998545557899999999999999999999
Q ss_pred CCccccCC--CCCCEEEccCCCCcccCCccccCCCC------CceeeccCCcceeccCcccccc---cccceeccCCC--
Q 005401 227 IPESLTRL--TKLKNLDLSFNGLTGSIPSSITEMKS------IEQIELFKNSLSGELPVKWVNM---TTLLRFDASMN-- 293 (698)
Q Consensus 227 ~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~------L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n-- 293 (698)
.+..+..+ ++|+.|+++.|.+.+..|..+..+.+ |++|++++|.+++..+..+... ..+..+.++.+
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 99888887 89999999999999888887776665 9999999999988777766543 56667766633
Q ss_pred -------ccccccCccccc---ccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccc
Q 005401 294 -------QLTGTIPNELCE---LQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSY 363 (698)
Q Consensus 294 -------~l~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~ 363 (698)
.+.+.....+.. .+++.|++++|.+.+..+..+..+++|+.|++++|++++..+..|..+++|++|++++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 333333333333 2799999999999988889999999999999999999999899999999999999999
Q ss_pred CccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccc
Q 005401 364 NQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKIS 443 (698)
Q Consensus 364 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 443 (698)
|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++. ..+++|+.+++++|+++.. |
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l-~ 397 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTL-P 397 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCC-C
T ss_pred CCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccc-c
Confidence 999988899999999999999999999988888999999999999999999853 3388999999999999844 3
Q ss_pred hhhhcCCCCCeeeccCccceeecC-ccccccCCceEEECCCCcccccccc-hhccCCCCCeEEcccCccc-----cccch
Q 005401 444 KSISGANNLSSLLVSRNNFSGSIP-DEVGLLSNLVEFSGDGNKFAGQIPG-SLAKLSQLGNLDLSENELS-----GGIPE 516 (698)
Q Consensus 444 ~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~-----~~~~~ 516 (698)
.. ...++.|++++|++.+... ..+..+++|+.|++++|++++..+. .+..+++|++|+|++|.++ +..+.
T Consensus 398 ~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~ 474 (844)
T 3j0a_A 398 KI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474 (844)
T ss_dssp CC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS
T ss_pred cc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh
Confidence 32 4689999999999986432 2356899999999999999865443 4567899999999999997 44456
Q ss_pred hhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccccCeEEcccCcCcccCChhhhhhcCCc
Q 005401 517 GIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLRLNVLNLSNNRLSGELPPLYAKEMYRG 596 (698)
Q Consensus 517 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~~~~ 596 (698)
.|.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..+. ..|+.|++++|++++..|..+ ......
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~-~~L~~l 552 (844)
T 3j0a_A 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVF-VSLSVL 552 (844)
T ss_dssp CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCC-SSCCEE
T ss_pred hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHh-CCcCEE
Confidence 788999999999999999999999999999999999999999988887766 349999999999999888553 234444
Q ss_pred ccCCCCCCC
Q 005401 597 SFLGNPGLC 605 (698)
Q Consensus 597 ~~~~n~~~c 605 (698)
.+.+||..|
T Consensus 553 ~l~~Np~~C 561 (844)
T 3j0a_A 553 DITHNKFIC 561 (844)
T ss_dssp EEEEECCCC
T ss_pred EecCCCccc
Confidence 567899888
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7e-56 Score=493.41 Aligned_cols=506 Identities=20% Similarity=0.287 Sum_probs=294.1
Q ss_pred ccCCchHHHHHHHHHHhcCCCCCC--------CCCCCCCCCCCCCCcc---cccccCCCCCcEEEEECCCCCCCcCCCcc
Q 005401 17 LTQSLNQDGLYLRRVKLGLSDPTD--------SLASWDDTRVDTPCHW---RGVSCDPLTQRVTSVNLSQSQLSGPFPIF 85 (698)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~w~~~~~~~~C~w---~g~~c~~~~~~v~~L~l~~~~l~~~~~~~ 85 (698)
.+++..+|+.||.+++.++.++.. ..++|+... ++|.| .||+|+.. ++|+.|+|+++++.|.+|..
T Consensus 24 ~~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~--~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~ 100 (636)
T 4eco_A 24 RTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNK--ELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDA 100 (636)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSS--CGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGG
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCC--CcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChH
Confidence 344556799999999998764422 234798764 89999 99999864 79999999999999999999
Q ss_pred ccCCCCCCEEECCCCCCc------c------cCCcCCcCCCCCCEEECCCCCCcccCccccCC-CCCCCEEECCCCcCcc
Q 005401 86 FCRLPYLAQLSLYNNYIN------S------SLPLDISTCRNLTDLNLGSNLLVGAIPATLSQ-LKNLKSLELQENNFTG 152 (698)
Q Consensus 86 ~~~l~~L~~L~L~~n~~~------~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~ 152 (698)
++++++|++|+|++|.+. + .+|... +..|+ +++++|.+.+..|..+.. +..+..+++....+..
T Consensus 101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~ 177 (636)
T 4eco_A 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177 (636)
T ss_dssp GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred HhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence 999999999999999762 1 112111 33445 566666666555554441 1111111111111100
Q ss_pred cCCcCccCCCCccEEEc--cCcccCCccCccccCcCCCcEeeccCCCCCCCC-----------------Cccccc--CCC
Q 005401 153 DIPASFGEFTQLESLSL--FNNLLNGTISSSLGNISTLKELRLAYNPFQPGQ-----------------LPSQLS--NLT 211 (698)
Q Consensus 153 ~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~-----------------~~~~l~--~l~ 211 (698)
.....++.+.+ .+|.+++ +|..++++++|++|++++|.++ +. +|..++ +++
T Consensus 178 ------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~ 249 (636)
T 4eco_A 178 ------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFV-AENICEAWENENSEYAQQYKTEDLKWDNLK 249 (636)
T ss_dssp ------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCC-GGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred ------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccc-cccccccccccccchhcccCchhhhhcccC
Confidence 00011111111 1233443 3444444444444444444444 21 455555 555
Q ss_pred CCCEEEcccCCCCCcCCccccCCCCCCEEEccCCC-Ccc-cCCccccCC------CCCceeeccCCcceeccCc--cccc
Q 005401 212 NLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNG-LTG-SIPSSITEM------KSIEQIELFKNSLSGELPV--KWVN 281 (698)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~~--~~~~ 281 (698)
+|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.++ .+|. .+..
T Consensus 250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~ 328 (636)
T 4eco_A 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK 328 (636)
T ss_dssp TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT
T ss_pred CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc
Confidence 55555555555555555555555555555555555 554 445444443 55555555555555 4454 5555
Q ss_pred ccccceeccCCCccccccCcccccc-cccEEEccCccccccCChhccCCCC-CCEEEccCCcCCcCCCccccCCC--CCC
Q 005401 282 MTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKN-LSELKLFNNKLRGGLPSELGKYS--PLT 357 (698)
Q Consensus 282 ~~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~--~L~ 357 (698)
+++|+.|++++|.++|.+| .+..+ +|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++ +|+
T Consensus 329 l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMS 405 (636)
T ss_dssp CTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEE
T ss_pred CCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccC
Confidence 5555555555555555555 33333 5555555555555 55566666666 777777777776 4555555433 666
Q ss_pred EEEcccCccceecCcccC-------CCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCE
Q 005401 358 TLDLSYNQFSGEIPEGLC-------EKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYL 430 (698)
Q Consensus 358 ~L~ls~n~l~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 430 (698)
+|++++|.+++..|..+. .+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+....
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~---- 481 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN---- 481 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT----
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc----
Confidence 777777766666665555 455566666666666533333344456666666666655532222222111
Q ss_pred EEccCCccccccchhhhcCCCCCeeeccCccceeecCcccc--ccCCceEEECCCCcccccccchhccCCCCCeEEc---
Q 005401 431 FELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVG--LLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDL--- 505 (698)
Q Consensus 431 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L--- 505 (698)
..+.++++|++|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|++|+|
T Consensus 482 -------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 482 -------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp -------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred -------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence 00112236666666666666 4555554 66666777777766665 5666666777777777
Q ss_pred ---ccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccC
Q 005401 506 ---SENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKI 562 (698)
Q Consensus 506 ---s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 562 (698)
++|++.+.+|..+..+++|++|+|++|++. .+|..+. ++|++||+++|++....
T Consensus 547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred cccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcccc
Confidence 456667777777777777777777777773 6666654 67777777777766543
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-53 Score=473.58 Aligned_cols=492 Identities=21% Similarity=0.211 Sum_probs=402.9
Q ss_pred CCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEc
Q 005401 90 PYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSL 169 (698)
Q Consensus 90 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 169 (698)
+++++|++++|.+++..+.+|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+.+|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46778888888887777777888888888888888877777777888888888888888887777777888888888888
Q ss_pred cCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCC----CEEEccCC
Q 005401 170 FNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKL----KNLDLSFN 245 (698)
Q Consensus 170 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~l~~n 245 (698)
++|.+++..+..++++++|++|++++|.+....+|..++++++|++|++++|.+++..+..+..+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 88887766666677888888888888887744677778888888888888888877777777777777 78888888
Q ss_pred CCcccCCccccCCCCCceeeccCCccee-ccCcccccccccceeccCCCcc---------ccccCcccccccccEEEccC
Q 005401 246 GLTGSIPSSITEMKSIEQIELFKNSLSG-ELPVKWVNMTTLLRFDASMNQL---------TGTIPNELCELQLESLNLYE 315 (698)
Q Consensus 246 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l---------~~~~~~~~~~~~L~~L~l~~ 315 (698)
.+.+..+..+... +|++|++++|.... .++..+..++.++...+....+ .......+..+.++.++++.
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 8877666666555 68888887774321 2333444555555443332211 11122223344688888888
Q ss_pred c-cccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccC
Q 005401 316 N-RLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKI 394 (698)
Q Consensus 316 n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 394 (698)
+ .+.+..+..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc
Confidence 8 777888899999999999999999998 577778888 9999999999998 5554 47789999999999988766
Q ss_pred CccccCCCCCcEEEccCccCcCcc--CccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecC-cccc
Q 005401 395 PQSLGKCRSLRRVRLRHNLLSGSV--PEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIP-DEVG 471 (698)
Q Consensus 395 ~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~ 471 (698)
+. ..+++|++|++++|.+++.. +..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+.
T Consensus 342 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhh
Confidence 54 77999999999999998764 67889999999999999999877665 8899999999999999997766 5688
Q ss_pred ccCCceEEECCCCcccccccchhccCCCCCeEEcccCccc-cccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCE
Q 005401 472 LLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELS-GGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNY 550 (698)
Q Consensus 472 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 550 (698)
.+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|+|++|++++..|..|..+++|++
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 9999999999999999999999999999999999999998 578999999999999999999999888999999999999
Q ss_pred EeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhh
Q 005401 551 LDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYA 590 (698)
Q Consensus 551 L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~ 590 (698)
|++++|++++..|..+..++ |+.|++++|+++|.||..++
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 99999999999888888887 99999999999999997644
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-53 Score=481.30 Aligned_cols=512 Identities=20% Similarity=0.257 Sum_probs=323.9
Q ss_pred ccCCchHHHHHHHHHHhcCCCCCCCCCCCCCCC---CCCC--Ccc------------cccccCCCCCcEEEEECCCCCCC
Q 005401 17 LTQSLNQDGLYLRRVKLGLSDPTDSLASWDDTR---VDTP--CHW------------RGVSCDPLTQRVTSVNLSQSQLS 79 (698)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~---~~~~--C~w------------~g~~c~~~~~~v~~L~l~~~~l~ 79 (698)
.++...+|+.||+++|.++.+| +|+... ..+| |.| .||+|+. .++|+.|+|+++++.
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC
Confidence 3445567999999999999876 675443 1245 999 9999986 579999999999999
Q ss_pred cCCCccccCCCCCCEEEC-CCCCCcccCCcCCcCC-CCCCE--------------EEC-CCCCCcccC-----------c
Q 005401 80 GPFPIFFCRLPYLAQLSL-YNNYINSSLPLDISTC-RNLTD--------------LNL-GSNLLVGAI-----------P 131 (698)
Q Consensus 80 ~~~~~~~~~l~~L~~L~L-~~n~~~~~~~~~~~~l-~~L~~--------------L~L-s~n~l~~~~-----------~ 131 (698)
|.+|..|+++++|++|+| ++|.+++..+..-... ..+.. ++. ....+.... +
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 8888877644221111 00000 000 000000000 0
Q ss_pred cccCCCCCCCEEECCC--CcCcccCCcCccCCCCccEEEccCcccCC-----------------ccCcccc--CcCCCcE
Q 005401 132 ATLSQLKNLKSLELQE--NNFTGDIPASFGEFTQLESLSLFNNLLNG-----------------TISSSLG--NISTLKE 190 (698)
Q Consensus 132 ~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~ 190 (698)
........++.+.+.. |.+++ +|..|+++++|++|+|++|.+++ .+|..++ ++++|++
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred cccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 0011222333333333 66666 66677777777777777777776 3677766 8888888
Q ss_pred eeccCCCCCCCCCcccccCCCCCCEEEcccCC-CCC-cCCccccCC-------CCCCEEEccCCCCcccCCc--cccCCC
Q 005401 191 LRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCN-LLG-EIPESLTRL-------TKLKNLDLSFNGLTGSIPS--SITEMK 259 (698)
Q Consensus 191 L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l-------~~L~~L~l~~n~l~~~~~~--~~~~l~ 259 (698)
|++++|.+. +.+|..++++++|++|++++|+ +++ .+|..+..+ ++|+.|++++|.++ .+|. .+..++
T Consensus 496 L~Ls~N~l~-~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~ 573 (876)
T 4ecn_A 496 VELYNCPNM-TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV 573 (876)
T ss_dssp EEEESCTTC-CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT
T ss_pred EECcCCCCC-ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC
Confidence 888888877 6778888888888888888887 776 666655544 48888888888888 7777 788888
Q ss_pred CCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccccccEEEccCccccccCChhccCCCC-CCEEEcc
Q 005401 260 SIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKN-LSELKLF 338 (698)
Q Consensus 260 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~ 338 (698)
+|++|++++|.++ .+| .+..+++|+.|++++|.++ .+|. .+..+++ |+.|+++
T Consensus 574 ~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~-----------------------~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPE-----------------------DFCAFTDQVEGLGFS 627 (876)
T ss_dssp TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCT-----------------------TSCEECTTCCEEECC
T ss_pred CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchH-----------------------HHhhccccCCEEECc
Confidence 8888888888887 666 6666676666666666665 3443 3334444 5555555
Q ss_pred CCcCCcCCCccccCCC--CCCEEEcccCccceecCccc---C--CCCCCCEEecccCcCcccCCccccCCCCCcEEEccC
Q 005401 339 NNKLRGGLPSELGKYS--PLTTLDLSYNQFSGEIPEGL---C--EKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRH 411 (698)
Q Consensus 339 ~n~l~~~~~~~l~~~~--~L~~L~ls~n~l~~~~~~~~---~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 411 (698)
+|+++ .+|..+..++ +|+.|++++|.+.+.+|... . ..++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 628 ~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706 (876)
T ss_dssp SSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS
T ss_pred CCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC
Confidence 55544 3344443332 25555555555544333211 1 223556666666666532222333566666666666
Q ss_pred ccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCcccc--ccCCceEEECCCCccccc
Q 005401 412 NLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVG--LLSNLVEFSGDGNKFAGQ 489 (698)
Q Consensus 412 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~ 489 (698)
|.++...+..+...+ ....++++|+.|+|++|+++ .+|..+. .+++|+.|++++|.+.+
T Consensus 707 N~L~~ip~~~~~~~~-----------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~- 767 (876)
T 4ecn_A 707 NLMTSIPENSLKPKD-----------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS- 767 (876)
T ss_dssp CCCSCCCTTSSSCTT-----------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred CcCCccChHHhcccc-----------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-
Confidence 666532222222111 00111224444444444444 3344333 44444445554444443
Q ss_pred ccchhccCCCCCeEEc------ccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCc
Q 005401 490 IPGSLAKLSQLGNLDL------SENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 490 ~~~~~~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
+|..+..+++|+.|+| ++|++.+.+|..+..+++|++|+|++|++ +.+|..+. ++|+.|||++|++....+
T Consensus 768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 3444445555555555 45888889999999999999999999999 58888765 699999999999988777
Q ss_pred ccccccc-cCeEEcccCcCcc--cCC
Q 005401 564 LELQNLR-LNVLNLSNNRLSG--ELP 586 (698)
Q Consensus 564 ~~~~~~~-L~~L~ls~N~l~~--~~~ 586 (698)
..+.... +..+.+.+|++.. .||
T Consensus 845 ~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 845 TSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp GGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred HHccccccchheeecCCCccccCCCC
Confidence 7766654 7778888887765 455
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-50 Score=449.74 Aligned_cols=502 Identities=22% Similarity=0.204 Sum_probs=429.4
Q ss_pred CCcccccccCC--CCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccC
Q 005401 53 PCHWRGVSCDP--LTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAI 130 (698)
Q Consensus 53 ~C~w~g~~c~~--~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 130 (698)
.|.+.+.+-.+ .+.+++.|++++|.+++..+..|.++++|++|+|++|.+++..+.+|.++++|++|++++|.+....
T Consensus 13 ~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (570)
T 2z63_A 13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (570)
T ss_dssp ECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred EeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccC
Confidence 35544444333 3568999999999999998999999999999999999999999999999999999999999999888
Q ss_pred ccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCc-cCccccCcCCCcEeeccCCCCCCCCCcccccC
Q 005401 131 PATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGT-ISSSLGNISTLKELRLAYNPFQPGQLPSQLSN 209 (698)
Q Consensus 131 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~ 209 (698)
|..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++. +|..++++++|++|++++|.++ ...+..++.
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~ 171 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRV 171 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHH
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccc
Confidence 89999999999999999999977766899999999999999999874 6889999999999999999998 445667887
Q ss_pred CCCC----CEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcc-cCCccccCCCCCceeeccCCcc------eeccCcc
Q 005401 210 LTNL----EYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTG-SIPSSITEMKSIEQIELFKNSL------SGELPVK 278 (698)
Q Consensus 210 l~~L----~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~------~~~~~~~ 278 (698)
+++| +.|++++|.+.+..+..+... +|+.|++++|.... ..+..+..++.++...+....+ .......
T Consensus 172 l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 250 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTT
T ss_pred hhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhh
Confidence 8888 899999999998888887766 89999999985432 2445566677776665543222 2122223
Q ss_pred ccccc--ccceeccCCC-ccccccCcccccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCC
Q 005401 279 WVNMT--TLLRFDASMN-QLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYS 354 (698)
Q Consensus 279 ~~~~~--~L~~L~l~~n-~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 354 (698)
+..++ .++.++++++ .+.+..+..+..+ ++++|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..++
T Consensus 251 ~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~ 325 (570)
T 2z63_A 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLK 325 (570)
T ss_dssp TGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCS
T ss_pred hccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--cccc
Confidence 33333 3456666666 6667777777776 8999999999998 678888888 9999999999998 4444 4788
Q ss_pred CCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccC--CccccCCCCCcEEEccCccCcCccCccccCCCCCCEEE
Q 005401 355 PLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKI--PQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFE 432 (698)
Q Consensus 355 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 432 (698)
+|++|++++|.+.+..+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++..+. +..+++|+.|+
T Consensus 326 ~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~ 402 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD 402 (570)
T ss_dssp SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEE
T ss_pred ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEE
Confidence 999999999998876654 67899999999999998664 67888999999999999999876655 99999999999
Q ss_pred ccCCccccccc-hhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCccc-ccccchhccCCCCCeEEcccCcc
Q 005401 433 LADNSFTGKIS-KSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFA-GQIPGSLAKLSQLGNLDLSENEL 510 (698)
Q Consensus 433 l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l 510 (698)
+++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence 99999988765 57889999999999999999999999999999999999999998 57899999999999999999999
Q ss_pred ccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcc
Q 005401 511 SGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPL 564 (698)
Q Consensus 511 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 564 (698)
++..|..+..+++|++|+|++|++++..|..|..+++|++|++++|++++..|.
T Consensus 483 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999899999999999999999999988888899999999999999999987764
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-51 Score=454.92 Aligned_cols=497 Identities=20% Similarity=0.231 Sum_probs=352.5
Q ss_pred CCcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCcc
Q 005401 53 PCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPA 132 (698)
Q Consensus 53 ~C~w~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 132 (698)
.|.|.++ |+ .+++.++.. |..+. ++|++|+|++|.+++..|.+|.++++|++|++++|.+.+..|.
T Consensus 3 ~C~~~~~-c~----------~~~~~l~~i-p~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CD----------GRSRSFTSI-PSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EE----------CTTSCCSSC-CSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EE----------CCCCccccc-cccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4788776 63 344555533 33332 6788888888888777777788888888888888888877777
Q ss_pred ccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCc-cCccccCcCCCcEeeccCCCCCCCCCc-ccccCC
Q 005401 133 TLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGT-ISSSLGNISTLKELRLAYNPFQPGQLP-SQLSNL 210 (698)
Q Consensus 133 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ls~n~~~~~~~~-~~l~~l 210 (698)
+|..+++|++|++++|.+++..+..|+++++|++|++++|.+++. .+..++++++|++|++++|.+. ..+| ..+.++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~~l 147 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF-SEIRRIDFAGL 147 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-CEECTTTTTTC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccc-cccCHhhhhcc
Confidence 788888888888888888776666677777788888887777753 4556777777777777777633 2333 456667
Q ss_pred CCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceecc--C-cccccccccce
Q 005401 211 TNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGEL--P-VKWVNMTTLLR 287 (698)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~-~~~~~~~~L~~ 287 (698)
++|++|++++|.+++..|..+..+++|+.|+++.|.+....+..+..+++|++|++++|.+++.. + .....+++|+.
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 77777777777777666667777777777777776665322222344666666666666665421 1 11122334444
Q ss_pred eccCCCccccccCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCC------CccccCCCCCCEEEc
Q 005401 288 FDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGL------PSELGKYSPLTTLDL 361 (698)
Q Consensus 288 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~l~~~~~L~~L~l 361 (698)
|++++|.+++..+.. ++..+..+++|+.+++++|.+.+.. ...+..+.+++.|++
T Consensus 228 L~l~~n~l~~~~~~~-------------------l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 288 (549)
T 2z81_A 228 LAFRGSVLTDESFNE-------------------LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288 (549)
T ss_dssp EEEESCEEEHHHHHH-------------------HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred eeccccccchhHHHH-------------------HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence 444444433222211 1122344566666666666655421 123455667778887
Q ss_pred ccCcccee-----cCcccCCCCCCCEEecccCcCcccCCccc-cCCCCCcEEEccCccCcCccC---ccccCCCCCCEEE
Q 005401 362 SYNQFSGE-----IPEGLCEKGSLEDLVLIYNSFSGKIPQSL-GKCRSLRRVRLRHNLLSGSVP---EMFWGLPHMYLFE 432 (698)
Q Consensus 362 s~n~l~~~-----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~ 432 (698)
.++.+... .+..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|.+++..+ ..+..+++|+.|+
T Consensus 289 ~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~ 367 (549)
T 2z81_A 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367 (549)
T ss_dssp ESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE
T ss_pred cccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEE
Confidence 77765432 1122233467899999999887 556555 578999999999999987664 3477889999999
Q ss_pred ccCCccccccc--hhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCcc
Q 005401 433 LADNSFTGKIS--KSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENEL 510 (698)
Q Consensus 433 l~~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 510 (698)
+++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+.. +|..+ .++|++|+|++|++
T Consensus 368 Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l 443 (549)
T 2z81_A 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNL 443 (549)
T ss_dssp CTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCC
T ss_pred ccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCCh
Confidence 99999987643 56888999999999999998 678888999999999999999874 34333 26899999999999
Q ss_pred ccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChh-
Q 005401 511 SGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL- 588 (698)
Q Consensus 511 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~- 588 (698)
++.+ ..+++|++|+|++|+++ .+|. ...+++|++|||++|++++.+|..+..++ |+.|++++|++.|.||..
T Consensus 444 ~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 517 (549)
T 2z81_A 444 DSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 517 (549)
T ss_dssp SCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHH
T ss_pred hhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHH
Confidence 8653 57899999999999999 6776 56799999999999999999999899888 999999999999999953
Q ss_pred hhhhcC
Q 005401 589 YAKEMY 594 (698)
Q Consensus 589 ~~~~~~ 594 (698)
|+..|.
T Consensus 518 ~l~~~l 523 (549)
T 2z81_A 518 YLSRWL 523 (549)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.2e-49 Score=444.27 Aligned_cols=496 Identities=23% Similarity=0.194 Sum_probs=340.8
Q ss_pred CCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEcc
Q 005401 91 YLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLF 170 (698)
Q Consensus 91 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 170 (698)
++++|+|++|.|+++.+.+|.++++|++|+|++|.+.++.+++|.++++|++|+|++|++++..+.+|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 45555555555555555555555555555555555555555555555555555555555554444555555555555555
Q ss_pred CcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCC----CEEEccCCC
Q 005401 171 NNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKL----KNLDLSFNG 246 (698)
Q Consensus 171 ~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~l~~n~ 246 (698)
+|.+++..+..|+++++|++|++++|.++...+|..++.+++|++|++++|++++..+..+..+.++ ..++++.|.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 5555555555555555555555555555544445555555555555555555555544444433322 245555555
Q ss_pred CcccCCccccCCCCCceeeccCCccee-------------------------------ccCcccccccccceeccCCCcc
Q 005401 247 LTGSIPSSITEMKSIEQIELFKNSLSG-------------------------------ELPVKWVNMTTLLRFDASMNQL 295 (698)
Q Consensus 247 l~~~~~~~~~~l~~L~~L~l~~n~~~~-------------------------------~~~~~~~~~~~L~~L~l~~n~l 295 (698)
+....+..+ ....++.+++.+|.... .....+.....+...++..+..
T Consensus 213 l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 213 MNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred ccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 543322222 22233444444432221 1111222223333332222211
Q ss_pred cc---ccCcccccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecC
Q 005401 296 TG---TIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIP 371 (698)
Q Consensus 296 ~~---~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~ 371 (698)
.. .....+... .++.+.+.++.+... ..+.....++.|++.+|.+....+. .+..|+.+++..|.+....
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~- 365 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF- 365 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC-
T ss_pred cccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc-
Confidence 11 111122222 677777777776633 3455667889999999888755433 4567888999888776433
Q ss_pred cccCCCCCCCEEecccCcCcc--cCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccc-hhhhc
Q 005401 372 EGLCEKGSLEDLVLIYNSFSG--KIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKIS-KSISG 448 (698)
Q Consensus 372 ~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~ 448 (698)
....+++|+.+++++|.+.. ..+..+..+.+|+++++..|.+.. .+..+..+++|+.+++..+......+ ..+..
T Consensus 366 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 366 -SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp -CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred -ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccc
Confidence 34578899999999998863 456677788999999999998874 45568899999999999888765544 56788
Q ss_pred CCCCCeeeccCccceeecCccccccCCceEEECCCCccc-ccccchhccCCCCCeEEcccCccccccchhhhccCCCCEE
Q 005401 449 ANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFA-GQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINEL 527 (698)
Q Consensus 449 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 527 (698)
+.+++.++++.|.+.+..+..+..++.|+.|++++|.+. +..|..|..+++|++|+|++|++++..|..|.++++|++|
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 999999999999999999999999999999999999854 4678889999999999999999999999999999999999
Q ss_pred eCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCccccccc-c-cCeEEcccCcCcccCChhhhhhcCC
Q 005401 528 NLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNL-R-LNVLNLSNNRLSGELPPLYAKEMYR 595 (698)
Q Consensus 528 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~-~-L~~L~ls~N~l~~~~~~~~~~~~~~ 595 (698)
+|++|+|++..|..|.++++|++|||++|+|++..|..+..+ + |++|++++|||.|.|...|+..|.+
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~ 593 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 593 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHH
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHH
Confidence 999999999889999999999999999999999999999887 4 9999999999999999888877654
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.2e-49 Score=432.14 Aligned_cols=469 Identities=17% Similarity=0.173 Sum_probs=357.6
Q ss_pred CEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCc
Q 005401 93 AQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNN 172 (698)
Q Consensus 93 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 172 (698)
++|++++|+++. +|..+. ++|++|++++|.+.+..|..|.++++|++|++++|++++..|.+|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 689999999985 565555 89999999999999888899999999999999999999888999999999999999999
Q ss_pred ccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCC--CEEEccCCCC--c
Q 005401 173 LLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKL--KNLDLSFNGL--T 248 (698)
Q Consensus 173 ~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~ 248 (698)
.++. +|.. .+++|++|++++|.++...+|..++++++|++|++++|.+.+ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 9985 4444 789999999999999855678899999999999999999876 356777777 9999999998 6
Q ss_pred ccCCccccCCC-CCceeeccCCcceeccCc-ccccccccceeccCCCccccccCcccccccccEEEccCccccccCChhc
Q 005401 249 GSIPSSITEMK-SIEQIELFKNSLSGELPV-KWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESI 326 (698)
Q Consensus 249 ~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 326 (698)
+..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|....... .+.+.++ .+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----------------~~~~~~~-~l 216 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS----------------YFLSILA-KL 216 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH----------------HHHHHHH-GG
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc----------------eeecchh-hh
Confidence 67777776655 233556666766554433 45556666666666654100000 0222222 45
Q ss_pred cCCCCCCEEEccCCcCCcCCCcccc---CCCCCCEEEcccCccceecCccc-----CCCCCCCEEecccCcCcccCC-cc
Q 005401 327 ARSKNLSELKLFNNKLRGGLPSELG---KYSPLTTLDLSYNQFSGEIPEGL-----CEKGSLEDLVLIYNSFSGKIP-QS 397 (698)
Q Consensus 327 ~~~~~L~~L~l~~n~l~~~~~~~l~---~~~~L~~L~ls~n~l~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~~-~~ 397 (698)
..+++|+.|++++|.+++..+..+. ..++|++|++++|.+++.+|..+ ..+++|+.+++++|.+ .+| ..
T Consensus 217 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~ 294 (520)
T 2z7x_B 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSY 294 (520)
T ss_dssp GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHH
T ss_pred ccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhh
Confidence 5666777777776666543221111 13467777777777777777766 6777777777777777 344 34
Q ss_pred ccCC---CCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCcccee--ecCccccc
Q 005401 398 LGKC---RSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSG--SIPDEVGL 472 (698)
Q Consensus 398 ~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~ 472 (698)
+..+ ++|+.|++++|.+.... .+..+++|++|++++|++++..|..+..+++|++|++++|++++ .+|..+..
T Consensus 295 ~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~ 372 (520)
T 2z7x_B 295 IYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372 (520)
T ss_dssp HHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT
T ss_pred hhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh
Confidence 4433 56888888888776432 12577888888888888887777778888888888888888875 45567788
Q ss_pred cCCceEEECCCCcccccccc-hhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEE
Q 005401 473 LSNLVEFSGDGNKFAGQIPG-SLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYL 551 (698)
Q Consensus 473 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 551 (698)
+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..|..+. ++|++|+|++|+++ .+|..+..+++|++|
T Consensus 373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 88888888888888874554 478889999999999999887776664 78999999999999 788888899999999
Q ss_pred eCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhh-hhcC
Q 005401 552 DLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYA-KEMY 594 (698)
Q Consensus 552 ~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~-~~~~ 594 (698)
++++|+++...+..+..++ |++|++++|+++|.|+..|+ ..|.
T Consensus 450 ~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~ 494 (520)
T 2z7x_B 450 NVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 494 (520)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred ECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHH
Confidence 9999999964444477777 99999999999999998776 5554
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-48 Score=431.04 Aligned_cols=489 Identities=17% Similarity=0.153 Sum_probs=379.5
Q ss_pred CCCCCCCCCCCCcccccccCC--CCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEE
Q 005401 43 ASWDDTRVDTPCHWRGVSCDP--LTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLN 120 (698)
Q Consensus 43 ~~w~~~~~~~~C~w~g~~c~~--~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 120 (698)
|.|... +.|++.+++..+ .+.++++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|+
T Consensus 4 C~~~~~---c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 4 CDASGV---CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp ECTTSE---EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCce---EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 456442 235666666554 346899999999999999899999999999999999999999999999999999999
Q ss_pred CCCCCCcccCccccCCCCCCCEEECCCCcCcc-cCCcCccCCCCccEEEccCccc-CCccCccccCcCCCcEeeccCCCC
Q 005401 121 LGSNLLVGAIPATLSQLKNLKSLELQENNFTG-DIPASFGEFTQLESLSLFNNLL-NGTISSSLGNISTLKELRLAYNPF 198 (698)
Q Consensus 121 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~ls~n~~ 198 (698)
+++|.+.+..|..|.++++|++|++++|.+++ ..|..+.++++|++|++++|.+ ....+..+.++++|++|++++|.+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 99999998888889999999999999999986 3567899999999999999984 444457899999999999999999
Q ss_pred CCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccC--C-ccccCCCCCceeeccCCcceecc
Q 005401 199 QPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSI--P-SSITEMKSIEQIELFKNSLSGEL 275 (698)
Q Consensus 199 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~-~~~~~l~~L~~L~l~~n~~~~~~ 275 (698)
+ ...|..++.+++|++|++++|.+.......+..+++|++|++++|++++.. + .....+++|+.|++++|.+++..
T Consensus 161 ~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 161 R-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp C-EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred c-ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 8 567889999999999999999987544444567999999999999998642 2 23345789999999999988654
Q ss_pred Cc----ccccccccceeccCCCccccccCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcC-----C
Q 005401 276 PV----KWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGG-----L 346 (698)
Q Consensus 276 ~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~ 346 (698)
+. .+..+++++.+++++|.+.+...... .....+..+.+++.|++.++.+... .
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~-----------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l 302 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNP-----------------SESDVVSELGKVETVTIRRLHIPQFYLFYDL 302 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCC-----------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCC
T ss_pred HHHHHHHhhhhccccccccccccccccccccc-----------------cchhhhhhhcccccccccccccchhhhcccc
Confidence 43 34556778888888777664211000 0112234455666666666655431 1
Q ss_pred CccccCCCCCCEEEcccCccceecCccc-CCCCCCCEEecccCcCcccCC---ccccCCCCCcEEEccCccCcCccC--c
Q 005401 347 PSELGKYSPLTTLDLSYNQFSGEIPEGL-CEKGSLEDLVLIYNSFSGKIP---QSLGKCRSLRRVRLRHNLLSGSVP--E 420 (698)
Q Consensus 347 ~~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~--~ 420 (698)
+..+....+|++|++++|.+. .+|..+ ..+++|++|++++|.+.+..| ..+..+++|++|++++|++++..+ .
T Consensus 303 ~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 381 (549)
T 2z81_A 303 STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381 (549)
T ss_dssp CHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHH
T ss_pred hhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchh
Confidence 112233456777777777775 455544 457777777777777776543 235677788888888888776533 4
Q ss_pred cccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCC
Q 005401 421 MFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQL 500 (698)
Q Consensus 421 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 500 (698)
.+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+ .++|++|++++|++++.. ..+++|
T Consensus 382 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L 453 (549)
T 2z81_A 382 ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRL 453 (549)
T ss_dssp HGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTC
T ss_pred hhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChh
Confidence 5777888888888888887 45666777788888888888876 334332 368999999999888653 578999
Q ss_pred CeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCc
Q 005401 501 GNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 501 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
++|+|++|+++ .+|. ...+++|++|+|++|++++.+|..|..+++|++|++++|++++..|
T Consensus 454 ~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 454 QELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 99999999998 5665 5679999999999999999888889999999999999999998776
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-47 Score=418.51 Aligned_cols=456 Identities=20% Similarity=0.214 Sum_probs=358.6
Q ss_pred EEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCC
Q 005401 69 TSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQEN 148 (698)
Q Consensus 69 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 148 (698)
+.+++++++++. +|..+. ++|++|+|++|.+++..|.+|.++++|++|++++|++.+..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 479999999995 455554 89999999999999988889999999999999999999999999999999999999999
Q ss_pred cCcccCCcCccCCCCccEEEccCcccCC-ccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCC--CEEEcccCCC--
Q 005401 149 NFTGDIPASFGEFTQLESLSLFNNLLNG-TISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNL--EYLWLSGCNL-- 223 (698)
Q Consensus 149 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L--~~L~l~~n~l-- 223 (698)
+++ .+|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.++. ..+..+++| ++|++++|.+
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTT
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccc
Confidence 999 45655 89999999999999997 467899999999999999999882 457778888 9999999999
Q ss_pred CCcCCccccCCC-CCCEEEccCCCCcccCC-ccccCCCCCceeeccCCc-------ceeccCcccccccccceeccCCCc
Q 005401 224 LGEIPESLTRLT-KLKNLDLSFNGLTGSIP-SSITEMKSIEQIELFKNS-------LSGELPVKWVNMTTLLRFDASMNQ 294 (698)
Q Consensus 224 ~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-------~~~~~~~~~~~~~~L~~L~l~~n~ 294 (698)
.+..|..+..+. +...+++++|.+.+..+ ..+..+++|+.+++++|. +.+.++ .+..+++|+.+++++|.
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence 777887777665 34467888888876554 457789999999999997 665555 67778888888877776
Q ss_pred cccccCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccc-----cCCCCCCEEEcccCcccee
Q 005401 295 LTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSEL-----GKYSPLTTLDLSYNQFSGE 369 (698)
Q Consensus 295 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-----~~~~~L~~L~ls~n~l~~~ 369 (698)
+++..+..+.. .. ..++|++|++++|++++.+|..+ ..++.|+.+++++|.+ .
T Consensus 232 l~~~~~~~~~~-------------------~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~ 289 (520)
T 2z7x_B 232 TTWNSFIRILQ-------------------LV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--G 289 (520)
T ss_dssp EEHHHHHHHHH-------------------HH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--C
T ss_pred cCHHHHHHHHH-------------------Hh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--e
Confidence 66432221110 11 12355566666665555555555 5566666666666665 3
Q ss_pred cC-cccCCC---CCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCcccc--ccc
Q 005401 370 IP-EGLCEK---GSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTG--KIS 443 (698)
Q Consensus 370 ~~-~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~ 443 (698)
+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|.+++..|..+..+++|++|++++|++++ ..|
T Consensus 290 ~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 367 (520)
T 2z7x_B 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367 (520)
T ss_dssp SCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred cchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch
Confidence 33 222222 45777777777665332 12567788888888888887777778888888888888888876 455
Q ss_pred hhhhcCCCCCeeeccCccceeecCc-cccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccC
Q 005401 444 KSISGANNLSSLLVSRNNFSGSIPD-EVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWK 522 (698)
Q Consensus 444 ~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 522 (698)
..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..++
T Consensus 368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~ 444 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLE 444 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCC
Confidence 6788888999999999998874554 478889999999999999887776654 79999999999999 7788888999
Q ss_pred CCCEEeCCCCcCcccCCcc-cCCCCCCCEEeCCCCcCcccCc
Q 005401 523 NINELNLANNRLSGEIPSE-IGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 523 ~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
+|++|+|++|+++ .+|.. |..+++|++|++++|++++..+
T Consensus 445 ~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 445 ALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 9999999999999 46654 9999999999999999998654
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-48 Score=433.30 Aligned_cols=464 Identities=19% Similarity=0.258 Sum_probs=328.5
Q ss_pred CCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEc
Q 005401 90 PYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSL 169 (698)
Q Consensus 90 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 169 (698)
.+++.|+|+++.+.|.+|.+|.++++|++|+|++|.+... +..++... +...+|... +..|+ +++
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~-~~~~~~~~-----------~~~~~~~~~--~~~l~-l~l 145 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN-ERLFGPKG-----------ISANMSDEQ--KQKMR-MHY 145 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGT-CCSBSTTS-----------BCTTCCHHH--HHHHH-THH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccC-Cccccccc-----------cccCchHHH--HHHHH-hhH
Confidence 4678888888888888888888888888888888865311 11111000 000122211 33445 555
Q ss_pred cCcccCCccCccccC-cCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcc--cCCCCCcCCccccCCCCCCEEEccCCC
Q 005401 170 FNNLLNGTISSSLGN-ISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLS--GCNLLGEIPESLTRLTKLKNLDLSFNG 246 (698)
Q Consensus 170 ~~n~l~~~~~~~~~~-l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~--~n~l~~~~~~~l~~l~~L~~L~l~~n~ 246 (698)
+++.+.+.++..+.. +..+..+++....+.. .....++.+.+. .|++++ +|..++++++|++|++++|.
T Consensus 146 ~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~ 217 (636)
T 4eco_A 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSP 217 (636)
T ss_dssp HHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCC
T ss_pred HHhhhccCchhhHHHHHHHHhhcCcccccccc-------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCc
Confidence 555555555444431 2222333332222110 011112222221 244444 45555555555555555555
Q ss_pred Cccc-----------------CCcccc--CCCCCceeeccCCcceeccCcccccccccceeccCCCc-ccc-ccCccccc
Q 005401 247 LTGS-----------------IPSSIT--EMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQ-LTG-TIPNELCE 305 (698)
Q Consensus 247 l~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~~~ 305 (698)
+++. +|..+. ++++|++|++++|.+.+.+|..+.++++|+.|++++|. +++ .+|..+..
T Consensus 218 l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~ 297 (636)
T 4eco_A 218 FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297 (636)
T ss_dssp CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHH
T ss_pred cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHh
Confidence 5543 555555 55555555555555555555555555555555665555 555 45554443
Q ss_pred -------ccccEEEccCccccccCCh--hccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCC
Q 005401 306 -------LQLESLNLYENRLEGTLPE--SIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCE 376 (698)
Q Consensus 306 -------~~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 376 (698)
.+|++|++++|.++ .+|. .+..+++|++|++++|++++.+| .+..+++|++|++++|.++ .+|..+..
T Consensus 298 L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 374 (636)
T 4eco_A 298 LADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCG 374 (636)
T ss_dssp HHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEE
T ss_pred hhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhh
Confidence 26777778888777 6777 78888899999999999887778 7888889999999999888 77888888
Q ss_pred CCC-CCEEecccCcCcccCCccccCCC--CCcEEEccCccCcCccCcccc-------CCCCCCEEEccCCccccccchhh
Q 005401 377 KGS-LEDLVLIYNSFSGKIPQSLGKCR--SLRRVRLRHNLLSGSVPEMFW-------GLPHMYLFELADNSFTGKISKSI 446 (698)
Q Consensus 377 ~~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~ 446 (698)
+++ |++|++++|.+. .+|..+..++ +|++|++++|.+++..|..+. .+++|+.|++++|.++...+..+
T Consensus 375 l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~ 453 (636)
T 4eco_A 375 FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453 (636)
T ss_dssp ECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHH
T ss_pred hcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHH
Confidence 888 999999999988 6777777654 899999999999988888887 78899999999999996655667
Q ss_pred hcCCCCCeeeccCccceeecCcc-cccc-------CCceEEECCCCcccccccchhc--cCCCCCeEEcccCccccccch
Q 005401 447 SGANNLSSLLVSRNNFSGSIPDE-VGLL-------SNLVEFSGDGNKFAGQIPGSLA--KLSQLGNLDLSENELSGGIPE 516 (698)
Q Consensus 447 ~~~~~L~~L~l~~n~l~~~~~~~-~~~l-------~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~ 516 (698)
..+++|++|++++|+++ .+|.. +... ++|+.|++++|.++ .+|..+. .+++|++|+|++|++++ +|.
T Consensus 454 ~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~ 530 (636)
T 4eco_A 454 STGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPT 530 (636)
T ss_dssp HTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCC
T ss_pred ccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cCh
Confidence 77899999999999998 55543 3322 39999999999999 6787776 99999999999999997 899
Q ss_pred hhhccCCCCEEeC------CCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccccCeEEcccCcCcccC
Q 005401 517 GIESWKNINELNL------ANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLRLNVLNLSNNRLSGEL 585 (698)
Q Consensus 517 ~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~ 585 (698)
.+..+++|++|+| ++|++.+.+|..+..+++|++|+|++|++ +.+|..+. ..|+.|++++|++.+.-
T Consensus 531 ~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNISID 603 (636)
T ss_dssp GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCEEE
T ss_pred hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcccc
Confidence 9999999999999 56788889999999999999999999999 57777665 24999999999998743
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.4e-45 Score=410.56 Aligned_cols=500 Identities=19% Similarity=0.182 Sum_probs=402.1
Q ss_pred CcccccccCC--CCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCc
Q 005401 54 CHWRGVSCDP--LTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIP 131 (698)
Q Consensus 54 C~w~g~~c~~--~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 131 (698)
|+..+.+..| .+..+++|||++|.|++..+.+|.++++|++|+|++|+++++.+.+|.++++|++|+|++|++++..+
T Consensus 38 c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 38 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp CTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 4444444333 35689999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCc-cCccccCcCCCcEeeccCCCCCCCCCcccccCC
Q 005401 132 ATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGT-ISSSLGNISTLKELRLAYNPFQPGQLPSQLSNL 210 (698)
Q Consensus 132 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l 210 (698)
..|.++++|++|++++|++++..+..|+++++|++|++++|.+++. .|..+..+++|++|++++|.++ ...+..+..+
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~l~~L 196 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVL 196 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc-ccccccccch
Confidence 9999999999999999999988888899999999999999999864 5778899999999999999998 3445555544
Q ss_pred CC----CCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCccc-CC------------------------------ccc
Q 005401 211 TN----LEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGS-IP------------------------------SSI 255 (698)
Q Consensus 211 ~~----L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~------------------------------~~~ 255 (698)
.+ ...++++.|.+....+..+ ....++.+++.+|..... .+ ..+
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred hhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence 33 3468888888875554433 333455666665543211 11 111
Q ss_pred cCCCCCceeeccCCcc---eeccCcccccccccceeccCCCccccccCcccccccccEEEccCccccccCChhccCCCCC
Q 005401 256 TEMKSIEQIELFKNSL---SGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNL 332 (698)
Q Consensus 256 ~~l~~L~~L~l~~n~~---~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 332 (698)
.....+....+..+.. .......+....+++.+++..+.+....+ ......++.|++.+|.+....+ ..+..|
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~---~~l~~L 351 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPT---LKLKSL 351 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSCCCCSEEEEESCEESSCCC---CBCTTC
T ss_pred ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc-cccchhhhhhhcccccccCcCc---ccchhh
Confidence 2222233333322211 12334456677888888888887764332 1122278999999999875433 346789
Q ss_pred CEEEccCCcCCcCCCccccCCCCCCEEEcccCccce--ecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEcc
Q 005401 333 SELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSG--EIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLR 410 (698)
Q Consensus 333 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 410 (698)
+.+++..|.+.... ....+++|+.+++++|.+.. ..+..+....+|+.+++..+.... .+..+..+++|+.+++.
T Consensus 352 ~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~ 428 (635)
T 4g8a_A 352 KRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQ 428 (635)
T ss_dssp CEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECT
T ss_pred hhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhh
Confidence 99999999876432 34578999999999998853 456667788999999999998874 45568889999999999
Q ss_pred CccCcCcc-CccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccc-eeecCccccccCCceEEECCCCcccc
Q 005401 411 HNLLSGSV-PEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNF-SGSIPDEVGLLSNLVEFSGDGNKFAG 488 (698)
Q Consensus 411 ~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~ 488 (698)
.+...... ...|..+++++.++++.|.+.+..+..+..++.++.|++++|.+ .+..|..+..+++|++|++++|++++
T Consensus 429 ~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508 (635)
T ss_dssp TSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred hccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence 88776554 45688999999999999999999999999999999999999975 44678889999999999999999999
Q ss_pred cccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCC-CCCCEEeCCCCcCcccC
Q 005401 489 QIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNL-PVLNYLDLSGNLFSGKI 562 (698)
Q Consensus 489 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~ 562 (698)
..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+ ++|++|+|++|++++..
T Consensus 509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999998 68999999999999754
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-45 Score=407.39 Aligned_cols=460 Identities=20% Similarity=0.197 Sum_probs=288.8
Q ss_pred EEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCC
Q 005401 69 TSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQEN 148 (698)
Q Consensus 69 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 148 (698)
+.++++++++++ +|..+. ++|++|+|++|.+++..+.+|.++++|++|++++|.+.+..|+.|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 678888888886 444333 78888888888888877788888888888888888888877888888888888888888
Q ss_pred cCcccCCcCccCCCCccEEEccCcccCCc-cCccccCcCCCcEeeccCCCCCCCCCcccccCCCCC--CEEEcccCCC--
Q 005401 149 NFTGDIPASFGEFTQLESLSLFNNLLNGT-ISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNL--EYLWLSGCNL-- 223 (698)
Q Consensus 149 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L--~~L~l~~n~l-- 223 (698)
+++ .+|.. .+++|++|++++|.+++. .|..|+++++|++|++++|.++. ..+..+++| ++|++++|.+
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----LDLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT----TTTGGGTTSCEEEEEEEESSCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc----CchhhhhhceeeEEEeecccccc
Confidence 887 44544 677888888888887763 34677777777777777777762 223344444 7777777766
Q ss_pred CCcCCccccCCC--CCCEEEccCCCCcccCCc-cccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccC
Q 005401 224 LGEIPESLTRLT--KLKNLDLSFNGLTGSIPS-SITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIP 300 (698)
Q Consensus 224 ~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 300 (698)
++..|..+..+. .+ .++++.|.+.+..+. .+..+++|+.+++++|.... .
T Consensus 184 ~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~----------------------~---- 236 (562)
T 3a79_B 184 KGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC----------------------Q---- 236 (562)
T ss_dssp CSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH----------------------H----
T ss_pred cccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEeccccccccc----------------------c----
Confidence 555555555443 22 345555554433222 22334444444444442100 0
Q ss_pred cccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCC----CccccCCCCCCEEEcccCccceecCccc--
Q 005401 301 NELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGL----PSELGKYSPLTTLDLSYNQFSGEIPEGL-- 374 (698)
Q Consensus 301 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~ls~n~l~~~~~~~~-- 374 (698)
.+. .....+..++.|+.+++.++.+.+.. +.. ...++|++|++++|.+++.+|..+
T Consensus 237 ----------------~l~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~ 298 (562)
T 3a79_B 237 ----------------RLM-TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFT 298 (562)
T ss_dssp ----------------HHH-HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCC
T ss_pred ----------------hHH-HHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhh
Confidence 000 00112223333333333333322210 000 112244444444444444444433
Q ss_pred ---CCCCCCCEEecccCcCcccCC-ccccC---CCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhh
Q 005401 375 ---CEKGSLEDLVLIYNSFSGKIP-QSLGK---CRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSIS 447 (698)
Q Consensus 375 ---~~~~~L~~L~L~~n~l~~~~~-~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 447 (698)
..++.|+.+++..+.+ .+| ..+.. ..+|++|++++|.+.... ....+++|++|++++|.+++..+..+.
T Consensus 299 ~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~ 374 (562)
T 3a79_B 299 YSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS 374 (562)
T ss_dssp CCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred cccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc
Confidence 2333333333333333 122 11111 145666666666554321 114566666666666666666666666
Q ss_pred cCCCCCeeeccCcccee--ecCccccccCCceEEECCCCccccccc-chhccCCCCCeEEcccCccccccchhhhccCCC
Q 005401 448 GANNLSSLLVSRNNFSG--SIPDEVGLLSNLVEFSGDGNKFAGQIP-GSLAKLSQLGNLDLSENELSGGIPEGIESWKNI 524 (698)
Q Consensus 448 ~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 524 (698)
.+++|++|++++|++++ ..|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|++++..|..+. ++|
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L 452 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKV 452 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTC
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcC
Confidence 66777777777776664 223556777777777777777776444 3477788899999999998877666554 689
Q ss_pred CEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhh
Q 005401 525 NELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYA 590 (698)
Q Consensus 525 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~ 590 (698)
++|+|++|+++ .+|..+..+++|++|+|++|+++...+..+..++ |+.|++++|+|.|.|+..|+
T Consensus 453 ~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 453 KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp SEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred CEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 99999999998 6787777999999999999999964444477777 99999999999999998766
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1e-44 Score=409.14 Aligned_cols=357 Identities=22% Similarity=0.296 Sum_probs=281.1
Q ss_pred CCCCCcCCccccCCCCCCEEEccCCCCcc-----------------cCCcccc--CCCCCceeeccCCcceeccCccccc
Q 005401 221 CNLLGEIPESLTRLTKLKNLDLSFNGLTG-----------------SIPSSIT--EMKSIEQIELFKNSLSGELPVKWVN 281 (698)
Q Consensus 221 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~ 281 (698)
|++++ +|..+.++++|+.|++++|.+++ .+|..+. ++++|++|++++|.+.+.+|..+.+
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 44444 45555555555555555555554 2566655 6666666666666666666666666
Q ss_pred ccccceeccCCCc-ccc-ccCcccccc--------cccEEEccCccccccCCh--hccCCCCCCEEEccCCcCCcCCCcc
Q 005401 282 MTTLLRFDASMNQ-LTG-TIPNELCEL--------QLESLNLYENRLEGTLPE--SIARSKNLSELKLFNNKLRGGLPSE 349 (698)
Q Consensus 282 ~~~L~~L~l~~n~-l~~-~~~~~~~~~--------~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~ 349 (698)
+++|+.|++++|+ +++ .+|..+..+ +|+.|++++|.+. .+|. .+..+++|+.|++++|+++ .+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 6666666666665 665 555544433 5888888888888 7777 8889999999999999998 667 7
Q ss_pred ccCCCCCCEEEcccCccceecCcccCCCCC-CCEEecccCcCcccCCccccCCCC--CcEEEccCccCcCccCccc---c
Q 005401 350 LGKYSPLTTLDLSYNQFSGEIPEGLCEKGS-LEDLVLIYNSFSGKIPQSLGKCRS--LRRVRLRHNLLSGSVPEMF---W 423 (698)
Q Consensus 350 l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~---~ 423 (698)
+..+++|++|++++|.++ .+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+.+.+|... .
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 888999999999999998 78888888888 999999999988 67877777654 9999999999987665432 2
Q ss_pred --CCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccc--------cCCceEEECCCCcccccccch
Q 005401 424 --GLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGL--------LSNLVEFSGDGNKFAGQIPGS 493 (698)
Q Consensus 424 --~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~ 493 (698)
.+++|+.|++++|.++...+..+..+++|+.|++++|+++ .+|..+.. +++|+.|++++|+++ .+|..
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~ 746 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD 746 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHH
Confidence 4458999999999999555455568899999999999998 55554332 349999999999999 77888
Q ss_pred hc--cCCCCCeEEcccCccccccchhhhccCCCCEEeCCC------CcCcccCCcccCCCCCCCEEeCCCCcCcccCccc
Q 005401 494 LA--KLSQLGNLDLSENELSGGIPEGIESWKNINELNLAN------NRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLE 565 (698)
Q Consensus 494 ~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 565 (698)
+. .+++|+.|+|++|.+++ +|..+..+++|++|+|++ |++.+.+|..|..+++|+.|+|++|++ +.+|..
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 86 99999999999999997 788999999999999977 888889999999999999999999999 678877
Q ss_pred ccccccCeEEcccCcCcccCChh
Q 005401 566 LQNLRLNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 566 ~~~~~L~~L~ls~N~l~~~~~~~ 588 (698)
+.. .|+.|++++|++...-+..
T Consensus 825 l~~-~L~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 825 LTP-QLYILDIADNPNISIDVTS 846 (876)
T ss_dssp CCS-SSCEEECCSCTTCEEECGG
T ss_pred hcC-CCCEEECCCCCCCccChHH
Confidence 652 5999999999997655443
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1e-43 Score=391.55 Aligned_cols=442 Identities=20% Similarity=0.210 Sum_probs=317.0
Q ss_pred CCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEE
Q 005401 65 TQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLE 144 (698)
Q Consensus 65 ~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 144 (698)
+.+++.|++++|.+++..+..|.++++|++|+|++|.+++..|.+|.++++|++|++++|.+.. +|.. .+++|++|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLD 127 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEE
Confidence 4689999999999999999999999999999999999999999999999999999999999994 5554 899999999
Q ss_pred CCCCcCccc-CCcCccCCCCccEEEccCcccCCccCccccCcCCC--cEeeccCCCC--CCCCCcccccCCC--CCCEEE
Q 005401 145 LQENNFTGD-IPASFGEFTQLESLSLFNNLLNGTISSSLGNISTL--KELRLAYNPF--QPGQLPSQLSNLT--NLEYLW 217 (698)
Q Consensus 145 L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~ls~n~~--~~~~~~~~l~~l~--~L~~L~ 217 (698)
+++|++++. .|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+ + ...|..+..+. .+ .++
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~-~~~~~~l~~l~~~~l-~l~ 202 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK-GGETESLQIPNTTVL-HLV 202 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC-SSSCCEEEECCEEEE-EEE
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc-ccCcccccccCcceE-EEE
Confidence 999999973 468899999999999999999864 35555666 9999999998 5 55677776654 23 567
Q ss_pred cccCCCCCcCCc-cccCCCCCCEEEccCCCCc----ccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCC
Q 005401 218 LSGCNLLGEIPE-SLTRLTKLKNLDLSFNGLT----GSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASM 292 (698)
Q Consensus 218 l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 292 (698)
+++|.+.+..++ .+..+++|+.+++++|+.. ......+..+++++.+++.++.+.+..
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~----------------- 265 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC----------------- 265 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH-----------------
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH-----------------
Confidence 888888775554 5667899999999998521 011223555666666666555443211
Q ss_pred CccccccCcccccccccEEEccCccccccCChhc-----cCCCCCCEEEccCCcCCcCCC-ccccCCCCCCEEEcccCcc
Q 005401 293 NQLTGTIPNELCELQLESLNLYENRLEGTLPESI-----ARSKNLSELKLFNNKLRGGLP-SELGKYSPLTTLDLSYNQF 366 (698)
Q Consensus 293 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~ls~n~l 366 (698)
+.+ .+......+|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ .+| ..+..+
T Consensus 266 --~~~-~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~------------- 327 (562)
T 3a79_B 266 --SVK-LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSV------------- 327 (562)
T ss_dssp --HHH-HHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHH-------------
T ss_pred --HHH-HHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhh-------------
Confidence 110 0011111144555555555554444433 3333333333333333 122 111110
Q ss_pred ceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccc--cch
Q 005401 367 SGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGK--ISK 444 (698)
Q Consensus 367 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~ 444 (698)
....+|++|++++|.+.... ....+++|++|++++|.+++..|..+..+++|++|++++|++++. .|.
T Consensus 328 --------~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 397 (562)
T 3a79_B 328 --------FAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397 (562)
T ss_dssp --------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHH
T ss_pred --------hccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchh
Confidence 01134555555555553221 114566777777777777766677777777777777777777653 345
Q ss_pred hhhcCCCCCeeeccCccceeecC-ccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCC
Q 005401 445 SISGANNLSSLLVSRNNFSGSIP-DEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKN 523 (698)
Q Consensus 445 ~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 523 (698)
.+..+++|++|++++|++++.+| ..+..+++|++|++++|.+++..|..+. ++|++|+|++|+++ .+|..+..+++
T Consensus 398 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~ 474 (562)
T 3a79_B 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQA 474 (562)
T ss_dssp TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCC
T ss_pred hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCC
Confidence 67778888888888888887454 4577889999999999998877765544 79999999999999 67777779999
Q ss_pred CCEEeCCCCcCcccCCcc-cCCCCCCCEEeCCCCcCcccCc
Q 005401 524 INELNLANNRLSGEIPSE-IGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 524 L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
|++|+|++|+++ .+|.. |..+++|++|++++|++++..|
T Consensus 475 L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 475 LQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 999999999999 56655 9999999999999999998655
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.3e-41 Score=361.53 Aligned_cols=387 Identities=19% Similarity=0.201 Sum_probs=256.3
Q ss_pred EEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcC-CccccCCCCCCEEEccC
Q 005401 166 SLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEI-PESLTRLTKLKNLDLSF 244 (698)
Q Consensus 166 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~ 244 (698)
.++.+++.++.. |. + .++|++|++++|.++ ...|..++++++|++|++++|.+.+.+ +..|..+++|++|++++
T Consensus 14 ~~~c~~~~l~~l-p~-l--~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLHQV-PE-L--PAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCSSC-CC-C--CTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcccC-CC-C--CCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 455555555422 22 1 145555555555554 233445555555555555555554322 33455555555555555
Q ss_pred CCCcccCCccccCCCCCceeeccCCcceeccCcc--cccccccceeccCCCccccccCcccccccccEEEccCccccccC
Q 005401 245 NGLTGSIPSSITEMKSIEQIELFKNSLSGELPVK--WVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTL 322 (698)
Q Consensus 245 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 322 (698)
|.+++..|..+..+++|++|++++|.+++..+.. +..++ +|++|++++|.+.+..
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-----------------------~L~~L~L~~n~l~~~~ 145 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT-----------------------SLEMLVLRDNNIKKIQ 145 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT-----------------------TCCEEECCSSBCCSCC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc-----------------------cCCEEECCCCccCccC
Confidence 5555444555555555555555555554322222 33344 4444444445444444
Q ss_pred Chh-ccCCCCCCEEEccCCcCCcCCCccccCC--CCCCEEEcccCccceecCcc--------cCCCCCCCEEecccCcCc
Q 005401 323 PES-IARSKNLSELKLFNNKLRGGLPSELGKY--SPLTTLDLSYNQFSGEIPEG--------LCEKGSLEDLVLIYNSFS 391 (698)
Q Consensus 323 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~~--~~L~~L~ls~n~l~~~~~~~--------~~~~~~L~~L~L~~n~l~ 391 (698)
|.. +..+++|++|++++|++++..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+.
T Consensus 146 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 225 (455)
T 3v47_A 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225 (455)
T ss_dssp CCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC
T ss_pred cccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccc
Confidence 433 5566666666666666666555555544 45666666666665443322 224456677777777666
Q ss_pred ccCCccccCC---CCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhc--CCCCCeeeccCccceeec
Q 005401 392 GKIPQSLGKC---RSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISG--ANNLSSLLVSRNNFSGSI 466 (698)
Q Consensus 392 ~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~L~~L~l~~n~l~~~~ 466 (698)
+..|..+... ++|+.|++++|...+... ..+.+....+..+.. .++|+.|++++|.+.+..
T Consensus 226 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp HHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccc
Confidence 6555555433 667777777665543211 111222222222332 368999999999999989
Q ss_pred CccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCC
Q 005401 467 PDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLP 546 (698)
Q Consensus 467 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 546 (698)
|..+..+++|++|++++|.+.+..|..|..+++|++|+|++|.+++..|..+.++++|++|+|++|++++..|..|..++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 99999999999999999999988899999999999999999999988899999999999999999999988899999999
Q ss_pred CCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChh-hhhhcC
Q 005401 547 VLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL-YAKEMY 594 (698)
Q Consensus 547 ~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~-~~~~~~ 594 (698)
+|++|++++|++++..+..+..++ |++|++++|+++|.||.. |+..|.
T Consensus 372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l 421 (455)
T 3v47_A 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 421 (455)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred cccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHH
Confidence 999999999999988887888887 999999999999999954 555444
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.5e-41 Score=359.22 Aligned_cols=364 Identities=18% Similarity=0.166 Sum_probs=277.1
Q ss_pred CCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCccc-CccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEE
Q 005401 90 PYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGA-IPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLS 168 (698)
Q Consensus 90 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 168 (698)
++|++|+|++|.+++..|..|.++++|++|++++|.+.+. .+..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 6788888888888888788888888888888888887643 456788888888888888888877788888888888888
Q ss_pred ccCcccCCccCcc--ccCcCCCcEeeccCCCCCCCCCccc-ccCCCCCCEEEcccCCCCCcCCccccCC--CCCCEEEcc
Q 005401 169 LFNNLLNGTISSS--LGNISTLKELRLAYNPFQPGQLPSQ-LSNLTNLEYLWLSGCNLLGEIPESLTRL--TKLKNLDLS 243 (698)
Q Consensus 169 L~~n~l~~~~~~~--~~~l~~L~~L~ls~n~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~ 243 (698)
+++|.+++..+.. +.++++|++|++++|.++ ...|.. +.++++|++|++++|.+.+..+..+..+ .+|+.|+++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC-SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccC-ccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 8888887644433 788888888888888887 333544 7788888888888888888777777665 678888888
Q ss_pred CCCCcccCCcc--------ccCCCCCceeeccCCcceeccCcccccc---cccceeccCCCccccccCcccccccccEEE
Q 005401 244 FNGLTGSIPSS--------ITEMKSIEQIELFKNSLSGELPVKWVNM---TTLLRFDASMNQLTGTIPNELCELQLESLN 312 (698)
Q Consensus 244 ~n~l~~~~~~~--------~~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 312 (698)
+|.+.+..+.. +..+++|++|++++|.+.+..+..+... ++++.+++++|...+...
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------ 256 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF------------ 256 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT------------
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc------------
Confidence 88887554433 2356788999999998887777766554 778888888776553211
Q ss_pred ccCccccccCChhcc--CCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcC
Q 005401 313 LYENRLEGTLPESIA--RSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSF 390 (698)
Q Consensus 313 l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l 390 (698)
..+.+.+..+..+. ..++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 257 -~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 257 -GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp -TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred -chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 11112211122222 235788888888888877777788888888888888888877777888888888888888888
Q ss_pred cccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecC
Q 005401 391 SGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIP 467 (698)
Q Consensus 391 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 467 (698)
.+..+..|..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 77777788888888888888888887778888888888888888888887777777788888888888888887665
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.7e-39 Score=345.34 Aligned_cols=371 Identities=26% Similarity=0.299 Sum_probs=216.7
Q ss_pred CCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEee
Q 005401 113 CRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELR 192 (698)
Q Consensus 113 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 192 (698)
.+.|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|.+++++.+|+.+++.+|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 47788888888888 57788888888888888888888888888888877764444443321 2455666
Q ss_pred ccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcce
Q 005401 193 LAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLS 272 (698)
Q Consensus 193 ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 272 (698)
+++|.++ .+|.. .++|++|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.++
T Consensus 78 l~~~~l~--~lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 78 LNNLGLS--SLPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp CTTSCCS--CCCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred ecCCccc--cCCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence 6666555 23331 2456666666666654 3322 3566666666666653 2211 145666666666666
Q ss_pred eccCcccccccccceeccCCCccccccCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccC
Q 005401 273 GELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGK 352 (698)
Q Consensus 273 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 352 (698)
+ +| .+..+++|+.|++++|.+++ +|.... +|++|++++|.+.+ +| .+..+++|++|++++|++++ +|..
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~~--~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~--- 213 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDLPP--SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL--- 213 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCCcc--cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---
Confidence 4 44 36666666666666666663 333221 57777777777764 44 46777777777777777775 3322
Q ss_pred CCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEE
Q 005401 353 YSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFE 432 (698)
Q Consensus 353 ~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 432 (698)
.++|++|++++|.++ .+| .+..+++|++|++++|++.+ +|.. +++|++|++++|++++ +|.. .++|+.|+
T Consensus 214 ~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 283 (454)
T 1jl5_A 214 PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLD 283 (454)
T ss_dssp CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEE
Confidence 246777777777776 455 36777777777777777764 3332 3677777777777775 3322 36777777
Q ss_pred ccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCcccc
Q 005401 433 LADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSG 512 (698)
Q Consensus 433 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 512 (698)
+++|.+++... -.++|+.|++++|++++. +. ..++|++|++++|++.+ +|.. +++|++|++++|++++
T Consensus 284 ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~ 351 (454)
T 1jl5_A 284 VSENIFSGLSE----LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE 351 (454)
T ss_dssp CCSSCCSEESC----CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred CcCCccCcccC----cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc
Confidence 77777765321 115677777777777642 21 12477777777777775 4432 4677778888877773
Q ss_pred ccchhhhccCCCCEEeCCCCcCcc--cCCcccCCC
Q 005401 513 GIPEGIESWKNINELNLANNRLSG--EIPSEIGNL 545 (698)
Q Consensus 513 ~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l 545 (698)
+|. .+++|++|++++|++++ .+|.++..+
T Consensus 352 -lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 352 -VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp -CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred -ccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 444 46777788888887776 566655544
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.9e-39 Score=341.27 Aligned_cols=422 Identities=25% Similarity=0.285 Sum_probs=203.4
Q ss_pred cEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECC
Q 005401 67 RVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQ 146 (698)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 146 (698)
++++|++++|.+ +.+|..++++++|++|++++|.+.+..|..++++++|+.++++.|.. .++++|+++
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l~ 79 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELELN 79 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEECT
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEec
Confidence 455555555555 45555555555555555555555555555555554431111111100 123555555
Q ss_pred CCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCc
Q 005401 147 ENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGE 226 (698)
Q Consensus 147 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 226 (698)
+|.+++ +|. -.++|++|++++|.+++ +|.. +++|++|++++|.++ .++.. .++|++|++++|++++
T Consensus 80 ~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~--~l~~~---~~~L~~L~L~~n~l~~- 145 (454)
T 1jl5_A 80 NLGLSS-LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK--ALSDL---PPLLEYLGVSNNQLEK- 145 (454)
T ss_dssp TSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS--CCCSC---CTTCCEEECCSSCCSS-
T ss_pred CCcccc-CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC--cccCC---CCCCCEEECcCCCCCC-
Confidence 555553 222 12455555555555554 2322 245556666665554 22221 1456666666666654
Q ss_pred CCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccc
Q 005401 227 IPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL 306 (698)
Q Consensus 227 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 306 (698)
+| .+..+++|++|++++|++++ +|..+ .+|++|++++|.+++ +| .+..+++|+.|++++|.+++ +|... .
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~--~ 215 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP--L 215 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC--T
T ss_pred Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc--C
Confidence 33 35666666666666666553 33322 356666666666654 33 45666666666666666653 23221 1
Q ss_pred cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecc
Q 005401 307 QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLI 386 (698)
Q Consensus 307 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~ 386 (698)
+|++|++++|.+. .+|. +..+++|++|++++|++++ +|. ..++|++|++++|++++ +|.. .++|+.|+++
T Consensus 216 ~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls 285 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVS 285 (454)
T ss_dssp TCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred cccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECc
Confidence 6777777777777 5553 7777888888888888775 333 23678888888888775 4432 3678888888
Q ss_pred cCcCcccCCccccCCCCCcEEEccCccCcCccCccccCC-CCCCEEEccCCccccccchhhhcCCCCCeeeccCccceee
Q 005401 387 YNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGL-PHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGS 465 (698)
Q Consensus 387 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 465 (698)
+|.+.+.. .. .++|++|++++|.+++.. .+ ++|+.|++++|++++ +|.. +++|++|++++|+++ .
T Consensus 286 ~N~l~~l~-~~---~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~ 351 (454)
T 1jl5_A 286 ENIFSGLS-EL---PPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-E 351 (454)
T ss_dssp SSCCSEES-CC---CTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-C
T ss_pred CCccCccc-Cc---CCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-c
Confidence 88877531 11 257888888888777521 23 478888888888775 3332 467888888888877 4
Q ss_pred cCccccccCCceEEECCCCcccc--cccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcc--cCCcc
Q 005401 466 IPDEVGLLSNLVEFSGDGNKFAG--QIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSG--EIPSE 541 (698)
Q Consensus 466 ~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~ 541 (698)
+|. .+++|++|++++|++.+ .+|..+. +++.|.+.+.+|.. +++|++|++++|++++ .+|.
T Consensus 352 lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~--------~L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~- 416 (454)
T 1jl5_A 352 VPE---LPQNLKQLHVEYNPLREFPDIPESVE--------DLRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE- 416 (454)
T ss_dssp CCC---CCTTCCEEECCSSCCSSCCCCCTTCC--------EEECCC----------------------------------
T ss_pred ccc---hhhhccEEECCCCCCCcCCCChHHHH--------hhhhcccccccccc---cCcCCEEECCCCcCCccccchh-
Confidence 554 46778888888888876 4555443 23446666666653 4789999999999986 5554
Q ss_pred cCCCCCCCEEeCCCCcCcccCcccccc
Q 005401 542 IGNLPVLNYLDLSGNLFSGKIPLELQN 568 (698)
Q Consensus 542 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 568 (698)
+++.|++.+|.+.+..|.....
T Consensus 417 -----sl~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 417 -----SVEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp ---------------------------
T ss_pred -----hHhheeCcCcccCCccccCHHH
Confidence 4677788999998876655443
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.6e-39 Score=329.35 Aligned_cols=291 Identities=29% Similarity=0.475 Sum_probs=254.0
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCc--ccccccCCCC--CcEEEEECCCCCCCc--CCCccccCCCCCC
Q 005401 20 SLNQDGLYLRRVKLGLSDPTDSLASWDDTRVDTPCH--WRGVSCDPLT--QRVTSVNLSQSQLSG--PFPIFFCRLPYLA 93 (698)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~C~--w~g~~c~~~~--~~v~~L~l~~~~l~~--~~~~~~~~l~~L~ 93 (698)
+.++|+.||++||.++.+|. .+.+|+... +||. |.||.|+... ++|++|+++++.+++ .+|..|.++++|+
T Consensus 3 c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~--~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTT--DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCG-GGTTCCTTS--CTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCHHHHHHHHHHHHhcCCcc-cccCCCCCC--CCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 56789999999999998876 688998754 7898 9999998644 799999999999999 8899999999999
Q ss_pred EEECCC-CCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCc
Q 005401 94 QLSLYN-NYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNN 172 (698)
Q Consensus 94 ~L~L~~-n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 172 (698)
+|++++ |.+.+.+|..|.++++|++|++++|.+.+.+|..|..+++|++|++++|.+++.+|..|..+++|++|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999995 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCccccCcC-CCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccC
Q 005401 173 LLNGTISSSLGNIS-TLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSI 251 (698)
Q Consensus 173 ~l~~~~~~~~~~l~-~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 251 (698)
.+++.+|..+..++ +|++|++++|.++ +.+|..+..++ |++|++++|.+++..+..+..+++|+.|++++|.+++..
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~-~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLT-GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEE-EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeee-ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence 99988898999888 9999999999887 67788888886 999999999998888888999999999999999988665
Q ss_pred CccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccc-cccEEEccCcc
Q 005401 252 PSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL-QLESLNLYENR 317 (698)
Q Consensus 252 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~ 317 (698)
+. +..+++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|.. ..+ +|+.+++++|+
T Consensus 238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 55 777888999999999888888888888888888888888887766654 222 55555555554
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5e-38 Score=339.38 Aligned_cols=344 Identities=19% Similarity=0.151 Sum_probs=278.7
Q ss_pred CEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccccccEEEccCcc
Q 005401 238 KNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENR 317 (698)
Q Consensus 238 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 317 (698)
+.++.+++.++ .+|..+. ++++.|++++|.+++..+..|..+++|+.|++++ |.
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-----------------------n~ 67 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNE-----------------------NI 67 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTT-----------------------SC
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCC-----------------------Cc
Confidence 46677777666 4454432 4666777777766665555555555555555554 44
Q ss_pred ccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCcc
Q 005401 318 LEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQS 397 (698)
Q Consensus 318 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 397 (698)
+.+..|..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..
T Consensus 68 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 147 (477)
T 2id5_A 68 VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147 (477)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS
T ss_pred cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh
Confidence 55455666777788888888888888766667788888888888888888777888888888888888888888888888
Q ss_pred ccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCce
Q 005401 398 LGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLV 477 (698)
Q Consensus 398 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 477 (698)
|.++++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.......+|+
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 227 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcccc
Confidence 88888888888888888877777788888899999988888888788888889999999999887777777766677999
Q ss_pred EEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCc
Q 005401 478 EFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNL 557 (698)
Q Consensus 478 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 557 (698)
+|++++|.++...+..+..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|+
T Consensus 228 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp EEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred EEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 99999999986666788999999999999999998888889999999999999999999999999999999999999999
Q ss_pred CcccCcccccccc-cCeEEcccCcCcccCChhhhhhcC-CcccCCCCCCCCC
Q 005401 558 FSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMY-RGSFLGNPGLCGD 607 (698)
Q Consensus 558 l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~-~~~~~~n~~~c~~ 607 (698)
+++..+..|..++ |++|++++|+|.|.|+..|+..+. ...+.++...|..
T Consensus 308 l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~ 359 (477)
T 2id5_A 308 LTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCAT 359 (477)
T ss_dssp CSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEE
T ss_pred CceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCC
Confidence 9998888888887 999999999999999988775543 2445677777754
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.4e-37 Score=328.01 Aligned_cols=362 Identities=19% Similarity=0.188 Sum_probs=213.5
Q ss_pred cCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccC
Q 005401 105 SLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGN 184 (698)
Q Consensus 105 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 184 (698)
..+..+.++++|++|++++|.+.+. | .+..+++|++|++++|++++. | ++.+++|++|++++|.+++. + +++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred ccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 3344566677777777777777754 4 567777777777777777753 2 66677777777777776654 2 666
Q ss_pred cCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcee
Q 005401 185 ISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQI 264 (698)
Q Consensus 185 l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 264 (698)
+++|++|++++|.++ .++ ++.+++|++|++++|++++. .+..+++|++|++++|...+.+ .+..+++|++|
T Consensus 105 l~~L~~L~L~~N~l~--~l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLT--KLD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp CTTCCEEECCSSCCS--CCC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCcCCEEECCCCcCC--eec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 666777777666665 232 55666666666666666553 2555566666666665433222 23344444444
Q ss_pred eccCCcceeccCcccccccccceeccCCCccccccCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCc
Q 005401 265 ELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRG 344 (698)
Q Consensus 265 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 344 (698)
++++|.+++ +| +..+++|+.|++++|++++
T Consensus 176 ~ls~n~l~~------------------------------------------------l~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 176 DCSFNKITE------------------------------------------------LD--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp ECCSSCCCC------------------------------------------------CC--CTTCTTCCEEECCSSCCSC
T ss_pred ECCCCccce------------------------------------------------ec--cccCCCCCEEECcCCcCCe
Confidence 444444332 11 2333444444444444443
Q ss_pred CCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccC
Q 005401 345 GLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWG 424 (698)
Q Consensus 345 ~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 424 (698)
. .+..+++|++|++++|++++ +| +..+++|+.|++++|++.+.. +..+++|+.|+++.|
T Consensus 206 ~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n------------ 264 (457)
T 3bz5_A 206 L---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT------------ 264 (457)
T ss_dssp C---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC------------
T ss_pred e---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC------------
Confidence 2 24444555555555555554 23 444555555555555555432 234455555555544
Q ss_pred CCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEE
Q 005401 425 LPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLD 504 (698)
Q Consensus 425 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 504 (698)
+|+.+++++|.+.+.+| +..+++|+.|++++|...+.+|. ...+|+.|++++ +++|++|+
T Consensus 265 --~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~-------------~~~L~~L~ 324 (457)
T 3bz5_A 265 --DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQ-------------NPKLVYLY 324 (457)
T ss_dssp --CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTT-------------CTTCCEEE
T ss_pred --CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhh-------------cccCCEEE
Confidence 23445555555554444 34566777777777766555553 234444444443 36778888
Q ss_pred cccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcc
Q 005401 505 LSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSG 583 (698)
Q Consensus 505 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~ 583 (698)
+++|++++. + +..+++|++|++++|++++ ++.|+.|++++|.++|. + .+. +..+++++|+++|
T Consensus 325 L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-~----~~~~l~~l~l~~N~l~g 388 (457)
T 3bz5_A 325 LNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-G----QTITMPKETLTNNSLTI 388 (457)
T ss_dssp CTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-E----EEEECCCBCCBTTBEEE
T ss_pred CCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-c----eeeecCccccccCcEEE
Confidence 888888864 2 7778888888888888874 24567777888888775 1 222 7778888888888
Q ss_pred cCChhhh
Q 005401 584 ELPPLYA 590 (698)
Q Consensus 584 ~~~~~~~ 590 (698)
.+|..++
T Consensus 389 ~ip~~~~ 395 (457)
T 3bz5_A 389 AVSPDLL 395 (457)
T ss_dssp ECCTTCB
T ss_pred EcChhHh
Confidence 8886544
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.8e-37 Score=326.19 Aligned_cols=358 Identities=22% Similarity=0.207 Sum_probs=205.2
Q ss_pred CccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCC
Q 005401 83 PIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFT 162 (698)
Q Consensus 83 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 162 (698)
+..+.++++|++|++++|.+++. | .+..+++|++|++++|.+.+. | +..+++|++|++++|.+++. + ++.++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred ccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 33566677777777777777664 3 577777777777777777754 3 67777777777777777754 2 67777
Q ss_pred CccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEc
Q 005401 163 QLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDL 242 (698)
Q Consensus 163 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 242 (698)
+|++|++++|.+++. + ++.+++|++|++++|.++. ++ ++.+++|++|++++|...+.+ .+..+++|+.|++
T Consensus 107 ~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~--l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE--ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC--CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce--ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 777777777777754 2 6777778888888777772 32 667778888888887554444 3677788888888
Q ss_pred cCCCCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccccccEEEccCccccccC
Q 005401 243 SFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTL 322 (698)
Q Consensus 243 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 322 (698)
++|++++ +| +..+++|+.|++++|.+++. .+..+++|+.|++++|+++ + +
T Consensus 178 s~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~-----------------------~-i 227 (457)
T 3bz5_A 178 SFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-----------------------E-I 227 (457)
T ss_dssp CSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS-----------------------C-C
T ss_pred CCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc-----------------------c-c
Confidence 8888875 33 66777777777777776643 2344444444444444333 2 2
Q ss_pred ChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCC
Q 005401 323 PESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCR 402 (698)
Q Consensus 323 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 402 (698)
| +..+++|+.|++++|++++.. +..+++|+.|++++| +|+.|++++|.+.+.+| +..++
T Consensus 228 p--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~ 286 (457)
T 3bz5_A 228 D--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCR 286 (457)
T ss_dssp C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCT
T ss_pred C--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccc
Confidence 2 344555666666666665432 334455555555543 23445555555444443 34455
Q ss_pred CCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECC
Q 005401 403 SLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGD 482 (698)
Q Consensus 403 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 482 (698)
+|+.|++++|...+.+|. ..++|+.+++++| ++|++|++++|++++. .+..+++|+.|+++
T Consensus 287 ~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~ 347 (457)
T 3bz5_A 287 KIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCV 347 (457)
T ss_dssp TCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECC
T ss_pred cCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEECC
Confidence 555555555554444332 2233333333322 3445555555555432 14444444444444
Q ss_pred CCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCc
Q 005401 483 GNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPS 540 (698)
Q Consensus 483 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 540 (698)
+|++++ ++.|+.|++++|.+.|. ..+..|+.+++++|+++|.+|.
T Consensus 348 ~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 348 NAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp SSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred CCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 444442 12344444444444433 1233344444444444444443
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4e-36 Score=322.83 Aligned_cols=346 Identities=27% Similarity=0.358 Sum_probs=167.8
Q ss_pred CCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEe
Q 005401 112 TCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKEL 191 (698)
Q Consensus 112 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 191 (698)
.+++|++|+++++.+.. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 35667777777777663 33 26667777777777777664433 6666677777777666665443 6666666666
Q ss_pred eccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcc
Q 005401 192 RLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSL 271 (698)
Q Consensus 192 ~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 271 (698)
++++|.++ .++. +.++++|++|++++|.+.+. + .+..+++|+.|+++ +.+.+.. .+..+++|++|++++|.+
T Consensus 118 ~L~~n~l~--~~~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 118 TLFNNQIT--DIDP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV 189 (466)
T ss_dssp ECCSSCCC--CCGG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred ECCCCCCC--CChH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence 66666655 2232 55556666666665555432 1 24555555555553 2222111 133333333333333333
Q ss_pred eeccCcccccccccceeccCCCccccccCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCcccc
Q 005401 272 SGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELG 351 (698)
Q Consensus 272 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 351 (698)
.+. ..+..+++|++|++++|.+++..+ ++
T Consensus 190 ~~~-------------------------------------------------~~l~~l~~L~~L~l~~n~l~~~~~--~~ 218 (466)
T 1o6v_A 190 SDI-------------------------------------------------SVLAKLTNLESLIATNNQISDITP--LG 218 (466)
T ss_dssp CCC-------------------------------------------------GGGGGCTTCSEEECCSSCCCCCGG--GG
T ss_pred CCC-------------------------------------------------hhhccCCCCCEEEecCCccccccc--cc
Confidence 211 113334444444444444443322 33
Q ss_pred CCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEE
Q 005401 352 KYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLF 431 (698)
Q Consensus 352 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 431 (698)
.+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|
T Consensus 219 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 292 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeE
Confidence 344444444444444321 123334444444444444433222 3444444444444444443222 3344444444
Q ss_pred EccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccc
Q 005401 432 ELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELS 511 (698)
Q Consensus 432 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 511 (698)
++++|++.+..+ +..+++|+.|++++|.+.+..| +..+++|++|++++|.++
T Consensus 293 ~L~~n~l~~~~~--------------------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 293 ELNENQLEDISP--------------------------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp ECCSSCCSCCGG--------------------------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred EcCCCcccCchh--------------------------hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence 444444433222 3344444444444444443333 344555555555555554
Q ss_pred cccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcc
Q 005401 512 GGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 512 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 560 (698)
+. ..+..+++|++|++++|++++..| +..+++|+.|++++|.+++
T Consensus 345 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 345 DV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred Cc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 33 244555555555555555554443 4555555555555555554
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.4e-36 Score=320.30 Aligned_cols=342 Identities=24% Similarity=0.354 Sum_probs=178.7
Q ss_pred cEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECC
Q 005401 67 RVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQ 146 (698)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 146 (698)
+++.|+++++.+... + .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 47 ~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 47 QVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp TCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred cccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 566666666666543 2 25666666677776666665543 6666666666666666664443 6666666666666
Q ss_pred CCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCc
Q 005401 147 ENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGE 226 (698)
Q Consensus 147 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 226 (698)
+|.+++..+ +..+++|++|++++|.+++.. .+..+++|++|++++ .+. .++ .+.++++|++|++++|.+.+.
T Consensus 121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~-~~~--~~~-~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 121 NNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGN-QVT--DLK-PLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEEE-SCC--CCG-GGTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecCC-ccc--Cch-hhccCCCCCEEECcCCcCCCC
Confidence 666664322 666666666666666665432 355666666666642 222 112 255556666666666555433
Q ss_pred CCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccc
Q 005401 227 IPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCEL 306 (698)
Q Consensus 227 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 306 (698)
..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++
T Consensus 193 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~---------------------- 244 (466)
T 1o6v_A 193 --SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTN---------------------- 244 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTT----------------------
T ss_pred --hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCC----------------------
Confidence 234555555555555555553322 34444555555555444321 12223333
Q ss_pred cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecc
Q 005401 307 QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLI 386 (698)
Q Consensus 307 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~ 386 (698)
|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|+++
T Consensus 245 -L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 245 -LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 317 (466)
T ss_dssp -CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECC
T ss_pred -CCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECc
Confidence 3333333333332221 4445555555555555554322 4455555555555555543322 4445555555555
Q ss_pred cCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccce
Q 005401 387 YNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFS 463 (698)
Q Consensus 387 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 463 (698)
+|.+.+..| +..+++|++|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp SSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred CCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 555554333 44555555555555555543 234455555555555555554443 444555555555555554
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-36 Score=325.72 Aligned_cols=350 Identities=20% Similarity=0.167 Sum_probs=264.6
Q ss_pred CCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCC
Q 005401 213 LEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASM 292 (698)
Q Consensus 213 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 292 (698)
-+.++.++++++ .+|..+ .++++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|+.|++++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 357788888877 445544 36899999999999988889999999999999999999988888888888888887777
Q ss_pred CccccccCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCc
Q 005401 293 NQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPE 372 (698)
Q Consensus 293 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~ 372 (698)
|.+++. .+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+.
T Consensus 90 n~l~~~-----------------------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 146 (477)
T 2id5_A 90 NRLKLI-----------------------PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146 (477)
T ss_dssp SCCCSC-----------------------CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred CcCCcc-----------------------CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh
Confidence 776632 223455566777777777777666666677777777777777777766666
Q ss_pred ccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCC
Q 005401 373 GLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNL 452 (698)
Q Consensus 373 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 452 (698)
.|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.++.......+|
T Consensus 147 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence 77777777777777777776655667777777777777777777767777777777777777777666666655555678
Q ss_pred CeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCC
Q 005401 453 SSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANN 532 (698)
Q Consensus 453 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 532 (698)
++|++++|++++..+..+..+++|+.|++++|.+.+..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 88888888887544456778888888888888888777777888888888888888888888888888888888888888
Q ss_pred cCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccccCeEEcccCcCcccCChh
Q 005401 533 RLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLRLNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 533 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~~~~ 588 (698)
++++..+..|..+++|++|++++|.+++..+.....-....+++.++...|..|..
T Consensus 307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~ 362 (477)
T 2id5_A 307 QLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEF 362 (477)
T ss_dssp CCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGG
T ss_pred cCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchH
Confidence 88876667788888888999999888864432211111344566777778877754
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.9e-35 Score=307.89 Aligned_cols=333 Identities=19% Similarity=0.134 Sum_probs=242.1
Q ss_pred CCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccccccEEEc
Q 005401 234 LTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNL 313 (698)
Q Consensus 234 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l 313 (698)
+++++.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+. |++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~-----------------------L~L 100 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK-----------------------LYM 100 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCE-----------------------EEC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCE-----------------------EEC
Confidence 456666666666665443344555666666666666665544445555555555 455
Q ss_pred cCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCccc
Q 005401 314 YENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGK 393 (698)
Q Consensus 314 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 393 (698)
++|.+.+..|..+..+++|++|++++|+++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 101 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 101 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 55555545555566667777777777777755445566777777777777777766666677777777777777777654
Q ss_pred CCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCcccccc
Q 005401 394 IPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLL 473 (698)
Q Consensus 394 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 473 (698)
.+..+++|+.|++++|.+++. ...++|+.|++++|.+...... ..++|+.|++++|.+++. ..+..+
T Consensus 181 ---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l 247 (390)
T 3o6n_A 181 ---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNY 247 (390)
T ss_dssp ---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGC
T ss_pred ---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCC
Confidence 245567777778777777642 3345778888888877655322 246788888888888753 567888
Q ss_pred CCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeC
Q 005401 474 SNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDL 553 (698)
Q Consensus 474 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 553 (698)
++|++|++++|.+.+..|..+..+++|++|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|++|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence 899999999999888888888999999999999999985 4666678899999999999998 67777888999999999
Q ss_pred CCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhcCCcccCCCCCCCCC
Q 005401 554 SGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMYRGSFLGNPGLCGD 607 (698)
Q Consensus 554 s~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~n~~~c~~ 607 (698)
++|.++... +..++ |+.|++++|++.|.+...++..+....+.+++..|..
T Consensus 326 ~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 326 DHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCT
T ss_pred CCCccceeC---chhhccCCEEEcCCCCccchhHHHHHHHHHhhcccccCceecc
Confidence 999998653 44455 9999999999999988888888888888888888864
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.3e-35 Score=322.06 Aligned_cols=333 Identities=19% Similarity=0.135 Sum_probs=248.3
Q ss_pred CCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccccccEEEc
Q 005401 234 LTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNL 313 (698)
Q Consensus 234 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l 313 (698)
+++++.+++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++ |++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-----------------------L~~L~L 106 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT-----------------------IQKLYM 106 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTT-----------------------CCEEEC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCC-----------------------CCEEEC
Confidence 355566666666655444444555555666665555555544445555554 455555
Q ss_pred cCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCccc
Q 005401 314 YENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGK 393 (698)
Q Consensus 314 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 393 (698)
++|.+.+..|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.
T Consensus 107 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 107 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 55555555555666777777777777777765555567777777777777777777777777777777777777777754
Q ss_pred CCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCcccccc
Q 005401 394 IPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLL 473 (698)
Q Consensus 394 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 473 (698)
.+..+++|+.|++++|.+++. ...++|+.|++++|.+....+.. .++|+.|++++|.+++ +..+..+
T Consensus 187 ---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l 253 (597)
T 3oja_B 187 ---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNY 253 (597)
T ss_dssp ---CGGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGC
T ss_pred ---ChhhhhhhhhhhcccCccccc-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccC
Confidence 245567788888888777642 34567888888888876544332 2578889999998875 4678888
Q ss_pred CCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeC
Q 005401 474 SNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDL 553 (698)
Q Consensus 474 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 553 (698)
++|+.|++++|.+.+..|..|..+++|+.|+|++|.+++ +|..+..+++|++|+|++|.++ .+|..+..+++|++|+|
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L 331 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEEC
Confidence 999999999999998888889999999999999999985 5666778899999999999999 67888888999999999
Q ss_pred CCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhcCCcccCCCCCCCCC
Q 005401 554 SGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMYRGSFLGNPGLCGD 607 (698)
Q Consensus 554 s~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~n~~~c~~ 607 (698)
++|.+++.. +..++ |+.|++++|+|+|.|...|+..+....+.+++..|+.
T Consensus 332 ~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 332 DHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp CSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCT
T ss_pred CCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhccccccccCCc
Confidence 999998764 34444 9999999999999998888888888888999999976
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-34 Score=301.56 Aligned_cols=311 Identities=19% Similarity=0.156 Sum_probs=203.7
Q ss_pred CCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEE
Q 005401 88 RLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESL 167 (698)
Q Consensus 88 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 167 (698)
.++++++|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 45788888888888877666667888888888888888887777788888888888888888887777777888888888
Q ss_pred EccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCC
Q 005401 168 SLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGL 247 (698)
Q Consensus 168 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 247 (698)
++++|.++...+..|.++++|++|++++|.+. ...+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 88888877655555677777777777777766 33345566667777777777766643 244556666666666655
Q ss_pred cccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccccccEEEccCccccccCChhcc
Q 005401 248 TGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIA 327 (698)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 327 (698)
.+ +...++|++|++++|.+... +... ..+|+.|++++|.+++. ..+.
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~-------------------------~~~~-~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVV-------------------------RGPV-NVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEE-------------------------ECCC-CSSCCEEECCSSCCCCC--GGGG
T ss_pred cc-----cCCCCcceEEECCCCeeeec-------------------------cccc-cccccEEECCCCCCccc--HHHc
Confidence 42 12223455555555544322 1100 01455566666665532 4566
Q ss_pred CCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEE
Q 005401 328 RSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRV 407 (698)
Q Consensus 328 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 407 (698)
.+++|++|++++|.+++..|..+..+++|++|++++|++++. |..+..+++|++|++++|++. .+|..+..+++|++|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence 667777777777777766666777777777777777776643 444455666777777777666 344455666666666
Q ss_pred EccCccCcCccCccccCCCCCCEEEccCCcccc
Q 005401 408 RLRHNLLSGSVPEMFWGLPHMYLFELADNSFTG 440 (698)
Q Consensus 408 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (698)
++++|.++... +..+++|+.|++++|.+..
T Consensus 324 ~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 324 YLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp ECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred ECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence 66666665442 4455566666666666553
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.8e-33 Score=309.88 Aligned_cols=311 Identities=19% Similarity=0.137 Sum_probs=205.1
Q ss_pred CCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEE
Q 005401 88 RLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESL 167 (698)
Q Consensus 88 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 167 (698)
.+++++.+++++|.+....+..|.++++|++|++++|.+.+..|..|..+++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 35678888888888877777677788888888888888887777788888888888888888887777777888888888
Q ss_pred EccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCC
Q 005401 168 SLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGL 247 (698)
Q Consensus 168 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 247 (698)
++++|.+++..+..|.++++|++|++++|.++ ...|..++.+++|++|++++|.+++.. +..+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 88888877666666677777777777777776 344556667777777777777666542 44556666666666655
Q ss_pred cccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccccccEEEccCccccccCChhcc
Q 005401 248 TGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIA 327 (698)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 327 (698)
.+ +....+|+.|++++|.+....+ ... .+|+.|++++|.+++ +..+.
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~------------------------~~~--~~L~~L~L~~n~l~~--~~~l~ 251 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRG------------------------PVN--VELTILKLQHNNLTD--TAWLL 251 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEEC------------------------SCC--SCCCEEECCSSCCCC--CGGGG
T ss_pred cc-----ccCCchhheeeccCCccccccc------------------------ccC--CCCCEEECCCCCCCC--Chhhc
Confidence 42 2223345555555554432111 100 145566666666654 24566
Q ss_pred CCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEE
Q 005401 328 RSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRV 407 (698)
Q Consensus 328 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 407 (698)
.+++|+.|++++|.+++..|..+..+++|+.|++++|.+++. |..+..+++|+.|++++|.+. .+|..+..+++|++|
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence 667777777777777766667777777777777777777643 444555666777777777666 455556666666666
Q ss_pred EccCccCcCccCccccCCCCCCEEEccCCcccc
Q 005401 408 RLRHNLLSGSVPEMFWGLPHMYLFELADNSFTG 440 (698)
Q Consensus 408 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (698)
++++|.+++.. +..+++|+.|++++|.+.+
T Consensus 330 ~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 330 YLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp ECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred ECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 66666665442 4455566666666665543
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.1e-32 Score=282.54 Aligned_cols=307 Identities=26% Similarity=0.322 Sum_probs=166.9
Q ss_pred ccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCcc
Q 005401 86 FCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLE 165 (698)
Q Consensus 86 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 165 (698)
+..+++|++|+++++.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.++.. .++..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 34566677777777766543 2 36667777777777777764433 67777777777777776642 2466777777
Q ss_pred EEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCC
Q 005401 166 SLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFN 245 (698)
Q Consensus 166 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 245 (698)
+|++++|.+++..+ +..+++|++|++++|... .. +..+..+++|++|++++|.+.+..+ +..+++|+.|++++|
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~-~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTC-CC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCc-cc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 77777777665433 666677777777776544 12 2336666667777776666654433 556666666666666
Q ss_pred CCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccccccEEEccCccccccCChh
Q 005401 246 GLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPES 325 (698)
Q Consensus 246 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 325 (698)
.+.+..+ +..+++|+.+++++|.+.+..+ +..+
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~------------------------------------------- 220 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANM------------------------------------------- 220 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGC-------------------------------------------
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcC-------------------------------------------
Confidence 6653221 4455555555555554442221 2233
Q ss_pred ccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCc
Q 005401 326 IARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLR 405 (698)
Q Consensus 326 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 405 (698)
++|++|++++|++++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+. ..+..+++|+
T Consensus 221 ----~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~ 290 (347)
T 4fmz_A 221 ----TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN 290 (347)
T ss_dssp ----TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred ----CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence 333333333333332211 33334444444444443321 2334444444444444444432 2344555555
Q ss_pred EEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccce
Q 005401 406 RVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFS 463 (698)
Q Consensus 406 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 463 (698)
+|++++|.+++..+..+..+++|+.|++++|++++..| +..+++|++|++++|.++
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 55555555555555555555555555555555554444 555566666666666553
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.3e-33 Score=285.95 Aligned_cols=250 Identities=27% Similarity=0.401 Sum_probs=157.7
Q ss_pred CCCEEEccCCcCCc--CCCccccCCCCCCEEEccc-CccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEE
Q 005401 331 NLSELKLFNNKLRG--GLPSELGKYSPLTTLDLSY-NQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRV 407 (698)
Q Consensus 331 ~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~ls~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 407 (698)
+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45556666666655 5555566666666666663 55555556556666666666666666665566666666666666
Q ss_pred EccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCC-CCCeeeccCccceeecCccccccCCceEEECCCCcc
Q 005401 408 RLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGAN-NLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKF 486 (698)
Q Consensus 408 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 486 (698)
++++|.+++..|..|..+++|++|++++|++++.+|..+..++ +|++|++++|++++..|..+..+. |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 6666666655666666666666666666666655666666665 666666666666666666666655 66666666666
Q ss_pred cccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccc
Q 005401 487 AGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLEL 566 (698)
Q Consensus 487 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 566 (698)
.+..|..+..+++|++|+|++|.+++.+|. +..+++|++|+|++|++++.+|..|..+++|++|++++|++++.+|..
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 666666666666777777777766655444 566667777777777776666766777777777777777777666654
Q ss_pred cccc-cCeEEcccCcCcc
Q 005401 567 QNLR-LNVLNLSNNRLSG 583 (698)
Q Consensus 567 ~~~~-L~~L~ls~N~l~~ 583 (698)
..++ |+.+++++|+.-|
T Consensus 288 ~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp TTGGGSCGGGTCSSSEEE
T ss_pred ccccccChHHhcCCCCcc
Confidence 4444 6666666665433
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.8e-32 Score=283.01 Aligned_cols=307 Identities=24% Similarity=0.336 Sum_probs=157.8
Q ss_pred ccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCC
Q 005401 182 LGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSI 261 (698)
Q Consensus 182 ~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 261 (698)
+..+++|++|+++++.+. .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.++. + ..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~--~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA--SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred chhcccccEEEEeCCccc--cch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence 345566666666666655 233 25555666666666665554322 5555666666666555553 1 234444444
Q ss_pred ceeeccCCcceeccCcccccccccceeccCCCccccccCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCc
Q 005401 262 EQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNK 341 (698)
Q Consensus 262 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 341 (698)
++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 113 ~~L~l~~n~i~~~~~-------------------------------------------------~~~l~~L~~L~l~~n~ 143 (347)
T 4fmz_A 113 RELYLNEDNISDISP-------------------------------------------------LANLTKMYSLNLGANH 143 (347)
T ss_dssp SEEECTTSCCCCCGG-------------------------------------------------GTTCTTCCEEECTTCT
T ss_pred CEEECcCCcccCchh-------------------------------------------------hccCCceeEEECCCCC
Confidence 444444444432111 2233334444444432
Q ss_pred CCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCcc
Q 005401 342 LRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEM 421 (698)
Q Consensus 342 l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 421 (698)
.....+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+++..+
T Consensus 144 ~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-- 216 (347)
T 4fmz_A 144 NLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-- 216 (347)
T ss_dssp TCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred Cccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--
Confidence 221111 23344444444444444332211 3344444444444444442221 4445555555555555544332
Q ss_pred ccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCC
Q 005401 422 FWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLG 501 (698)
Q Consensus 422 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 501 (698)
+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+. ..+..+++|+
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~ 290 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN 290 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence 4455555555555555544332 45555566666666655532 3355566666666666666543 2456667777
Q ss_pred eEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCc
Q 005401 502 NLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 502 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 559 (698)
+|++++|.+++..++.+..+++|++|+|++|++++..| +..+++|++||+++|.++
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77777777776666667777777777777777765444 666777777777777664
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=5.8e-33 Score=282.71 Aligned_cols=274 Identities=20% Similarity=0.268 Sum_probs=229.1
Q ss_pred cccCCchHHHHHHHHHHhcC-CCCCCCCCCCC---CCCCCCCCcccccccCC--------CCCcEEEEECCCCCCCcCCC
Q 005401 16 LLTQSLNQDGLYLRRVKLGL-SDPTDSLASWD---DTRVDTPCHWRGVSCDP--------LTQRVTSVNLSQSQLSGPFP 83 (698)
Q Consensus 16 ~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~---~~~~~~~C~w~g~~c~~--------~~~~v~~L~l~~~~l~~~~~ 83 (698)
...++..+++.||++||..+ .++.+....|. ... .++|.|.|+.|.. ...+|+.|+|+++.++ .+|
T Consensus 20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~-~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp 97 (328)
T 4fcg_A 20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNN-PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP 97 (328)
T ss_dssp C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTC-TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC
T ss_pred eccccCchHHHHHHHHHHhccCCchhhhhhhccccccc-ccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcC
Confidence 44556778999999999977 45555556783 222 4789999999952 3468999999999998 567
Q ss_pred ccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccC---
Q 005401 84 IFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGE--- 160 (698)
Q Consensus 84 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--- 160 (698)
..+.++++|++|+|++|.++ .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|++.+.+|..+..
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~ 175 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence 77888999999999999998 77888999999999999999998 77888999999999999998888888887654
Q ss_pred ------CCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCC
Q 005401 161 ------FTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRL 234 (698)
Q Consensus 161 ------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 234 (698)
+++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..++.+++|++|++++|.+.+.+|..+..+
T Consensus 176 ~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~--~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC--CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC--cCchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 888999999999888 66777888889999999998887 567778888889999999888888888888888
Q ss_pred CCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccc
Q 005401 235 TKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLT 296 (698)
Q Consensus 235 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 296 (698)
++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++++.+++..+.+.
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88999999888888888888888888888888888888888888888888888887766554
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=7.2e-31 Score=268.73 Aligned_cols=266 Identities=23% Similarity=0.271 Sum_probs=138.3
Q ss_pred cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecc
Q 005401 307 QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLI 386 (698)
Q Consensus 307 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~ 386 (698)
.++.|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.++ .+|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence 4555555555555444445555566666666666665555555555666666666666555 3333332 455555555
Q ss_pred cCcCcccCCccccCCCCCcEEEccCccCcC--ccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCcccee
Q 005401 387 YNSFSGKIPQSLGKCRSLRRVRLRHNLLSG--SVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSG 464 (698)
Q Consensus 387 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 464 (698)
+|.+.+..+..+.++++|++|++++|.+.. ..+..|..+++|+.|++++|.++.. |..+. ++|++|++++|.+++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQGLP--PSLTELHLDGNKITK 206 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSSCC--TTCSEEECTTSCCCE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-Ccccc--ccCCEEECCCCcCCc
Confidence 555555544555555555555555555542 3444555555555555555555432 22111 455555555555555
Q ss_pred ecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCC
Q 005401 465 SIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGN 544 (698)
Q Consensus 465 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 544 (698)
..|..+..+++|++|++++|.+.+..+..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|++++..+..|..
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 54555555555555555555555544445555555555555555555 44445555555555555555555444444432
Q ss_pred ------CCCCCEEeCCCCcCcc--cCcccccccc-cCeEEcccC
Q 005401 545 ------LPVLNYLDLSGNLFSG--KIPLELQNLR-LNVLNLSNN 579 (698)
Q Consensus 545 ------l~~L~~L~Ls~N~l~~--~~p~~~~~~~-L~~L~ls~N 579 (698)
.+.|+.|++++|.+.. ..|..|..+. ++.+++++|
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 2445555555555543 3344444443 555555554
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=4.8e-31 Score=270.14 Aligned_cols=286 Identities=22% Similarity=0.266 Sum_probs=159.2
Q ss_pred ccceeccCCCccccccCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccc
Q 005401 284 TLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSY 363 (698)
Q Consensus 284 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~ 363 (698)
+++.++++++.++ .+|..+. ..++.|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCcc-ccCCCCC-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 3444455544444 3333222 1455566666665555555566666666666666666655566666666666666666
Q ss_pred CccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcC--ccCccccCCCCCCEEEccCCccccc
Q 005401 364 NQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSG--SVPEMFWGLPHMYLFELADNSFTGK 441 (698)
Q Consensus 364 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~ 441 (698)
|.++ .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.++. ..+..|..+ +|+.|++++|.+++.
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 6665 3333332 556666666666665555556666666666666666642 444555555 666666666665542
Q ss_pred cchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhcc
Q 005401 442 ISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESW 521 (698)
Q Consensus 442 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 521 (698)
|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|+|++|+++ .+|..+..+
T Consensus 188 -~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 188 -PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp -CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred -Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 22221 45666666666665555555556666666666666666555555566666666666666665 455556666
Q ss_pred CCCCEEeCCCCcCcccCCcccCCC------CCCCEEeCCCCcCc--ccCcccccccc-cCeEEcccC
Q 005401 522 KNINELNLANNRLSGEIPSEIGNL------PVLNYLDLSGNLFS--GKIPLELQNLR-LNVLNLSNN 579 (698)
Q Consensus 522 ~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~Ls~N~l~--~~~p~~~~~~~-L~~L~ls~N 579 (698)
++|++|++++|++++..+..|... +.|+.|++++|.+. +..|..+..++ |+.+++++|
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 666666666666665444444432 44566666666655 34555555554 566666555
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=5.2e-35 Score=314.77 Aligned_cols=382 Identities=20% Similarity=0.181 Sum_probs=204.8
Q ss_pred CCccEEEccCcccCCccCcc-ccCcCCCcEeeccCCCCCCC---CCcccccCCCCCCEEEcccCCCCCcCCccc-cCCC-
Q 005401 162 TQLESLSLFNNLLNGTISSS-LGNISTLKELRLAYNPFQPG---QLPSQLSNLTNLEYLWLSGCNLLGEIPESL-TRLT- 235 (698)
Q Consensus 162 ~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~ls~n~~~~~---~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~- 235 (698)
++|++|++++|.++...... +..+++|++|++++|.++.. .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45667777777665443322 55666666666666665521 233445555666666666665544322222 1233
Q ss_pred ---CCCEEEccCCCCcc----cCCccccCCCCCceeeccCCcceeccCccccc-----ccccceeccCCCccccccCccc
Q 005401 236 ---KLKNLDLSFNGLTG----SIPSSITEMKSIEQIELFKNSLSGELPVKWVN-----MTTLLRFDASMNQLTGTIPNEL 303 (698)
Q Consensus 236 ---~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~~~~~~ 303 (698)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.. .+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~-------------------- 142 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC-------------------- 142 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC--------------------
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC--------------------
Confidence 45555555555542 22444444444555544444443222111110 11
Q ss_pred ccccccEEEccCcccccc----CChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCccc-CCCC
Q 005401 304 CELQLESLNLYENRLEGT----LPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGL-CEKG 378 (698)
Q Consensus 304 ~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~~~ 378 (698)
+|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .+ ...+
T Consensus 143 ---~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--------------------~l~~~~~ 199 (461)
T 1z7x_W 143 ---RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ--------------------GLKDSPC 199 (461)
T ss_dssp ---CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH--------------------HHHHSCC
T ss_pred ---cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHH--------------------HHhcCCC
Confidence 233333333333321 1223333444444444444443322222211 00 0123
Q ss_pred CCCEEecccCcCccc----CCccccCCCCCcEEEccCccCcCcc-----CccccCCCCCCEEEccCCccccc----cchh
Q 005401 379 SLEDLVLIYNSFSGK----IPQSLGKCRSLRRVRLRHNLLSGSV-----PEMFWGLPHMYLFELADNSFTGK----ISKS 445 (698)
Q Consensus 379 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~~~~ 445 (698)
+|++|++++|.+... ++..+..+++|++|++++|.+++.. +..+..+++|+.|++++|.++.. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 455555555544432 2344455566666666666554322 22233456666666666666543 3445
Q ss_pred hhcCCCCCeeeccCccceeecCccccc-----cCCceEEECCCCccccc----ccchhccCCCCCeEEcccCccccccch
Q 005401 446 ISGANNLSSLLVSRNNFSGSIPDEVGL-----LSNLVEFSGDGNKFAGQ----IPGSLAKLSQLGNLDLSENELSGGIPE 516 (698)
Q Consensus 446 ~~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 516 (698)
+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++. ++..+..+++|++|+|++|.+++..+.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 556677777777777665433332222 25777777777777654 455666778888888888887765555
Q ss_pred hhhc-----cCCCCEEeCCCCcCcc----cCCcccCCCCCCCEEeCCCCcCcccCccccc----c-c-ccCeEEcccCcC
Q 005401 517 GIES-----WKNINELNLANNRLSG----EIPSEIGNLPVLNYLDLSGNLFSGKIPLELQ----N-L-RLNVLNLSNNRL 581 (698)
Q Consensus 517 ~~~~-----l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~----~-~-~L~~L~ls~N~l 581 (698)
.+.. .++|++|+|++|++++ .+|..+..+++|++||+++|++++.....+. . . .|+.|++.++.+
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 4433 5688888888888875 6677777788888888888888764222222 1 1 277888888777
Q ss_pred cccCC
Q 005401 582 SGELP 586 (698)
Q Consensus 582 ~~~~~ 586 (698)
....+
T Consensus 440 ~~~~~ 444 (461)
T 1z7x_W 440 SEEME 444 (461)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 66544
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.8e-30 Score=265.90 Aligned_cols=288 Identities=19% Similarity=0.235 Sum_probs=138.3
Q ss_pred CCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEcc
Q 005401 91 YLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLF 170 (698)
Q Consensus 91 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 170 (698)
++++++++++.+.. +|..+ .++|++|++++|.+.+..|..|.++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 46666666666543 33333 2456666666666655555555566666666666665555555555555555555555
Q ss_pred CcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcc-
Q 005401 171 NNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTG- 249 (698)
Q Consensus 171 ~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~- 249 (698)
+|.++. +|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.++.
T Consensus 111 ~n~l~~--------------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 162 (332)
T 2ft3_A 111 KNHLVE--------------------------IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162 (332)
T ss_dssp SSCCCS--------------------------CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG
T ss_pred CCcCCc--------------------------cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC
Confidence 555552 222222 344444444444444444444445555555555554431
Q ss_pred -cCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccccccEEEccCccccccCChhccC
Q 005401 250 -SIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIAR 328 (698)
Q Consensus 250 -~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 328 (698)
..+..+..+ +|++|++++|.+++ +|..+. ++|+.|++++|. +.+..+..+..
T Consensus 163 ~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~-----------------------i~~~~~~~l~~ 215 (332)
T 2ft3_A 163 GFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNK-----------------------IQAIELEDLLR 215 (332)
T ss_dssp GSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSC-----------------------CCCCCTTSSTT
T ss_pred CCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCc-----------------------CCccCHHHhcC
Confidence 333333333 44444444444432 222111 233333333333 33233333444
Q ss_pred CCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccC------CC
Q 005401 329 SKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGK------CR 402 (698)
Q Consensus 329 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------l~ 402 (698)
+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+++..+..|.. .+
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccc
Confidence 444444444444444444444444445555555555444 34444444455555555555554443333332 24
Q ss_pred CCcEEEccCccCc--CccCccccCCCCCCEEEccCCc
Q 005401 403 SLRRVRLRHNLLS--GSVPEMFWGLPHMYLFELADNS 437 (698)
Q Consensus 403 ~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~ 437 (698)
+|+.|++++|.+. +..+..|..+++|+.+++++|+
T Consensus 295 ~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5666666666655 4555566666666666666553
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.3e-34 Score=307.60 Aligned_cols=262 Identities=20% Similarity=0.180 Sum_probs=197.9
Q ss_pred ChhccCCCCCCEEEccCCcCCcCCCcccc-----CCCCCCEEEcccCcccee----cCcccCCCCCCCEEecccCcCccc
Q 005401 323 PESIARSKNLSELKLFNNKLRGGLPSELG-----KYSPLTTLDLSYNQFSGE----IPEGLCEKGSLEDLVLIYNSFSGK 393 (698)
Q Consensus 323 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-----~~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~ 393 (698)
+..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+...
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 44555666666666666666543333222 244677777777766653 244455667888888888887654
Q ss_pred CCcccc-----CCCCCcEEEccCccCcCc----cCccccCCCCCCEEEccCCccccccc-----hhhhcCCCCCeeeccC
Q 005401 394 IPQSLG-----KCRSLRRVRLRHNLLSGS----VPEMFWGLPHMYLFELADNSFTGKIS-----KSISGANNLSSLLVSR 459 (698)
Q Consensus 394 ~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~~~L~~L~l~~ 459 (698)
.+..+. ..++|++|++++|.+++. ++..+..+++|+.|++++|.+.+... ..+..+++|++|++++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 443333 367999999999999874 46677889999999999999876432 2233589999999999
Q ss_pred ccceee----cCccccccCCceEEECCCCcccccccchhcc-----CCCCCeEEcccCccccc----cchhhhccCCCCE
Q 005401 460 NNFSGS----IPDEVGLLSNLVEFSGDGNKFAGQIPGSLAK-----LSQLGNLDLSENELSGG----IPEGIESWKNINE 526 (698)
Q Consensus 460 n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~ 526 (698)
|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++. ++..+..+++|++
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence 999864 5667778999999999999997655444433 37999999999999876 5667788899999
Q ss_pred EeCCCCcCcccCCcccCC-----CCCCCEEeCCCCcCcc----cCcccccccc-cCeEEcccCcCccc
Q 005401 527 LNLANNRLSGEIPSEIGN-----LPVLNYLDLSGNLFSG----KIPLELQNLR-LNVLNLSNNRLSGE 584 (698)
Q Consensus 527 L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~~~-L~~L~ls~N~l~~~ 584 (698)
|+|++|.+++..+..+.. .++|++|++++|.+++ .+|..+...+ |++|++++|++++.
T Consensus 346 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 999999998755544432 6899999999999996 7787777777 99999999999865
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.3e-30 Score=262.93 Aligned_cols=289 Identities=22% Similarity=0.253 Sum_probs=152.0
Q ss_pred CCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEcc
Q 005401 91 YLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLF 170 (698)
Q Consensus 91 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 170 (698)
++++++++++.++. +|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 57777777777654 333332 567777777777776666667777777777777777776666667777777777777
Q ss_pred CcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCC--cCCccccCCCCCCEEEccCCCCc
Q 005401 171 NNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLG--EIPESLTRLTKLKNLDLSFNGLT 248 (698)
Q Consensus 171 ~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~ 248 (698)
+|.++.. |..+. ++|++|++++|.++ ...+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 109 ~n~l~~l-~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLKEL-PEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCSBC-CSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCCcc-Chhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 7666532 22221 45555555555554 2223334455555555555555432 33344444455555555544444
Q ss_pred ccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccccccEEEccCccccccCChhccC
Q 005401 249 GSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIAR 328 (698)
Q Consensus 249 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 328 (698)
. +|..+. ++|++| ++++|.+++..+..+..
T Consensus 185 ~-l~~~~~--~~L~~L-----------------------------------------------~l~~n~l~~~~~~~~~~ 214 (330)
T 1xku_A 185 T-IPQGLP--PSLTEL-----------------------------------------------HLDGNKITKVDAASLKG 214 (330)
T ss_dssp S-CCSSCC--TTCSEE-----------------------------------------------ECTTSCCCEECTGGGTT
T ss_pred c-CCcccc--ccCCEE-----------------------------------------------ECCCCcCCccCHHHhcC
Confidence 2 222211 333333 33333333333344444
Q ss_pred CCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccC------CC
Q 005401 329 SKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGK------CR 402 (698)
Q Consensus 329 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------l~ 402 (698)
+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|.. .+
T Consensus 215 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence 444444555444444444444444445555555555444 34444444555555555555554444333322 25
Q ss_pred CCcEEEccCccCcC--ccCccccCCCCCCEEEccCCc
Q 005401 403 SLRRVRLRHNLLSG--SVPEMFWGLPHMYLFELADNS 437 (698)
Q Consensus 403 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~ 437 (698)
.++.+++++|.+.. ..|..|..+++++.+++++|+
T Consensus 294 ~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccceEeecCcccccccCccccccccceeEEEecccC
Confidence 56666666666643 445566667777777776653
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=7.2e-31 Score=271.33 Aligned_cols=282 Identities=18% Similarity=0.201 Sum_probs=232.2
Q ss_pred EEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCc
Q 005401 310 SLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNS 389 (698)
Q Consensus 310 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~ 389 (698)
..+.+++.++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3566667766 4555443 588999999999887777788889999999999999988888888889999999999999
Q ss_pred CcccCCccccCCCCCcEEEccCccCcCccC-ccccCCCCCCEEEccCC-ccccccchhhhcCCCCCeeeccCccceeecC
Q 005401 390 FSGKIPQSLGKCRSLRRVRLRHNLLSGSVP-EMFWGLPHMYLFELADN-SFTGKISKSISGANNLSSLLVSRNNFSGSIP 467 (698)
Q Consensus 390 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 467 (698)
+.+..+..+.++++|++|++++|.+++..+ ..|..+++|++|++++| .+....+..+..+++|++|++++|.+.+..|
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 986666668889999999999999986655 57889999999999998 4777777888999999999999999998889
Q ss_pred ccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhh---hccCCCCEEeCCCCcCcc----cCCc
Q 005401 468 DEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGI---ESWKNINELNLANNRLSG----EIPS 540 (698)
Q Consensus 468 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~----~~~~ 540 (698)
..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+ .....++.++|+++.+.+ .+|.
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 999999999999999999875555556678999999999999997665544 346778999999999886 4678
Q ss_pred ccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChh-hhhhcC
Q 005401 541 EIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL-YAKEMY 594 (698)
Q Consensus 541 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~-~~~~~~ 594 (698)
.+..+++|++||+++|+++...+..+..++ |++|++++|++.|.||.. |+..|.
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~ 327 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 327 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHH
Confidence 899999999999999999955444467777 999999999999999843 544443
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.4e-29 Score=270.85 Aligned_cols=258 Identities=21% Similarity=0.132 Sum_probs=190.3
Q ss_pred CEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCc
Q 005401 333 SELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHN 412 (698)
Q Consensus 333 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 412 (698)
..++.++..++. +|..+. +++++|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 57 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 344444444442 333222 35566666666666555556666666666666666666555566666666666666666
Q ss_pred cCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCc-cceeecCccccccCCceEEECCCCccccccc
Q 005401 413 LLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRN-NFSGSIPDEVGLLSNLVEFSGDGNKFAGQIP 491 (698)
Q Consensus 413 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 491 (698)
.++...+..|..+++|++|++++|.+....+..|..+++|+.|++++| .+....+..+..+++|+.|++++|.+.+. |
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence 666655556666666666666666666666666667777777777763 44433444677788888888888887754 3
Q ss_pred chhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-
Q 005401 492 GSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR- 570 (698)
Q Consensus 492 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~- 570 (698)
.+..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+..++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 477889999999999999998899999999999999999999998899999999999999999999988888888887
Q ss_pred cCeEEcccCcCcccCChhhhhhcCC
Q 005401 571 LNVLNLSNNRLSGELPPLYAKEMYR 595 (698)
Q Consensus 571 L~~L~ls~N~l~~~~~~~~~~~~~~ 595 (698)
|+.|++++|+|.|.|...|+..|.+
T Consensus 292 L~~L~L~~Np~~CdC~~~~l~~~l~ 316 (452)
T 3zyi_A 292 LVELHLHHNPWNCDCDILWLAWWLR 316 (452)
T ss_dssp CCEEECCSSCEECSTTTHHHHHHHH
T ss_pred CCEEEccCCCcCCCCCchHHHHHHH
Confidence 9999999999999999887765543
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=269.46 Aligned_cols=258 Identities=21% Similarity=0.156 Sum_probs=193.5
Q ss_pred CEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCc
Q 005401 333 SELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHN 412 (698)
Q Consensus 333 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 412 (698)
..++.++..++ .+|..+. ++++.|++++|.+++..+..|..+++|++|+|++|.+.+..+..|.++++|++|++++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 34555555554 2333322 45566666666666555556666666666666666666555566666666777777776
Q ss_pred cCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCc-cceeecCccccccCCceEEECCCCccccccc
Q 005401 413 LLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRN-NFSGSIPDEVGLLSNLVEFSGDGNKFAGQIP 491 (698)
Q Consensus 413 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 491 (698)
.++...+..|..+++|++|++++|.+....+..|..+++|++|++++| .+....+..+..+++|++|++++|.++. +|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc
Confidence 666666666666777777777777776666666777777777777774 3443444567778888888888888773 34
Q ss_pred chhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-
Q 005401 492 GSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR- 570 (698)
Q Consensus 492 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~- 570 (698)
.+..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|||++|++++..+..+..++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 378889999999999999998899999999999999999999999999999999999999999999998888888887
Q ss_pred cCeEEcccCcCcccCChhhhhhcCC
Q 005401 571 LNVLNLSNNRLSGELPPLYAKEMYR 595 (698)
Q Consensus 571 L~~L~ls~N~l~~~~~~~~~~~~~~ 595 (698)
|+.|++++|+|.|.|...|+..|..
T Consensus 281 L~~L~L~~Np~~CdC~l~~l~~~~~ 305 (440)
T 3zyj_A 281 LERIHLHHNPWNCNCDILWLSWWIK 305 (440)
T ss_dssp CCEEECCSSCEECSSTTHHHHHHHH
T ss_pred CCEEEcCCCCccCCCCchHHHHHHH
Confidence 9999999999999999887766643
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=6.8e-30 Score=258.56 Aligned_cols=259 Identities=24% Similarity=0.240 Sum_probs=182.7
Q ss_pred cEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccC
Q 005401 309 ESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYN 388 (698)
Q Consensus 309 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n 388 (698)
+.++.+++.++ .+|..+. ++|++|++++|+++...+..|..+++|++|++++|.++..
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------------------- 67 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK------------------- 67 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE-------------------
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc-------------------
Confidence 45555555555 3333222 4555555555555543333445555555555555554422
Q ss_pred cCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccc-hhhhcCCCCCeeeccCccceeecC
Q 005401 389 SFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKIS-KSISGANNLSSLLVSRNNFSGSIP 467 (698)
Q Consensus 389 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~ 467 (698)
+..+..+..+++|++|++++|.++. ++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+
T Consensus 68 ---~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 68 ---GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp ---EEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST
T ss_pred ---cCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch
Confidence 1113334445555555555555552 33445566666666666666665543 456677778888888888777777
Q ss_pred ccccccCCceEEECCCCcccc-cccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCC
Q 005401 468 DEVGLLSNLVEFSGDGNKFAG-QIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLP 546 (698)
Q Consensus 468 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 546 (698)
..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|+|++|++++..+..+..++
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 777888888888888888876 5778888899999999999999988888899999999999999999977777889999
Q ss_pred CCCEEeCCCCcCcccCccccccc-c-cCeEEcccCcCcccCChhhhhhc
Q 005401 547 VLNYLDLSGNLFSGKIPLELQNL-R-LNVLNLSNNRLSGELPPLYAKEM 593 (698)
Q Consensus 547 ~L~~L~Ls~N~l~~~~p~~~~~~-~-L~~L~ls~N~l~~~~~~~~~~~~ 593 (698)
+|++||+++|++++..|..+..+ + |++|++++|+++|.|+..++..|
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~ 272 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 272 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHH
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHH
Confidence 99999999999999999888887 3 99999999999999986654444
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=1.6e-32 Score=305.30 Aligned_cols=137 Identities=16% Similarity=0.111 Sum_probs=61.9
Q ss_pred CCCCCCEEEccCCccccccchhhhc-CCCCCeeecc----Cccceee-----cCccccccCCceEEECCCCc--cccccc
Q 005401 424 GLPHMYLFELADNSFTGKISKSISG-ANNLSSLLVS----RNNFSGS-----IPDEVGLLSNLVEFSGDGNK--FAGQIP 491 (698)
Q Consensus 424 ~l~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~ 491 (698)
.+++|+.|++..|.+++.....+.. +++|+.|+++ .|.+++. ++..+..+++|++|++++|. +++..+
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 3455555555444444443333333 4555555553 3333321 11223345555555554322 332222
Q ss_pred chh-ccCCCCCeEEcccCccccc-cchhhhccCCCCEEeCCCCcCccc-CCcccCCCCCCCEEeCCCCcCcc
Q 005401 492 GSL-AKLSQLGNLDLSENELSGG-IPEGIESWKNINELNLANNRLSGE-IPSEIGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 492 ~~~-~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~ 560 (698)
..+ ..+++|++|+|++|.+++. ++..+.++++|++|+|++|.+++. ++..+..+++|++|+|++|+++.
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 222 2245555555555555432 233334555555555555555432 22223345555556666555554
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.5e-29 Score=254.42 Aligned_cols=276 Identities=20% Similarity=0.217 Sum_probs=199.2
Q ss_pred ceeccCCCccccccCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcC--CCccccCCCCCCEEEccc
Q 005401 286 LRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGG--LPSELGKYSPLTTLDLSY 363 (698)
Q Consensus 286 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~l~~~~~L~~L~ls~ 363 (698)
+.++.+++.++ .+|..+. .++++|++++|.++...+..+..+++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcc-cCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 46788888887 4555443 3799999999999965555689999999999999999843 256667788899999998
Q ss_pred CccceecCcccCCCCCCCEEecccCcCcccCC-ccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCcccccc
Q 005401 364 NQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIP-QSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKI 442 (698)
Q Consensus 364 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 442 (698)
|.++ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------------------ 142 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF------------------------ 142 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS------------------------
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc------------------------
Confidence 8887 345556667777777777776664433 34555555555555555555444
Q ss_pred chhhhcCCCCCeeeccCcccee-ecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhcc
Q 005401 443 SKSISGANNLSSLLVSRNNFSG-SIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESW 521 (698)
Q Consensus 443 ~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 521 (698)
+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|++|+|++|.+++..+..+..+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 4444455555555555555554 456666777777777777777777777778888888888888888887777788889
Q ss_pred CCCCEEeCCCCcCcccCCcccCCCC-CCCEEeCCCCcCcccCcc--cccccc-cCeEEcccCcCcccCChh
Q 005401 522 KNINELNLANNRLSGEIPSEIGNLP-VLNYLDLSGNLFSGKIPL--ELQNLR-LNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 522 ~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~--~~~~~~-L~~L~ls~N~l~~~~~~~ 588 (698)
++|++|+|++|++++..|..+..++ +|++|++++|.+++..+. ....+. .+.+.+..+.+.|..|..
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 9999999999999988888888885 899999999999875331 112222 455566677788777654
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1e-28 Score=246.99 Aligned_cols=215 Identities=22% Similarity=0.222 Sum_probs=142.1
Q ss_pred CCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCc-cccccchhhhcCCCCCeeec
Q 005401 379 SLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNS-FTGKISKSISGANNLSSLLV 457 (698)
Q Consensus 379 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l 457 (698)
++++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|. +....+..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 44444444444444444444444555555555555544444455555555555555554 44444455555566666666
Q ss_pred cCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCccc
Q 005401 458 SRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGE 537 (698)
Q Consensus 458 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 537 (698)
++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|++|+|++|.+++..+..+..+++|++|+|++|++++.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 66666655555666666677777777766655556677778888888888888766666778888888888888888877
Q ss_pred CCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhc
Q 005401 538 IPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEM 593 (698)
Q Consensus 538 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~ 593 (698)
.|..|..+++|++|++++|.+++..+..+..++ |+.|++++|++.|.|+..++..|
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~ 249 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHH
Confidence 788888888888888888888877777777776 88888888888888886644333
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.1e-31 Score=296.20 Aligned_cols=235 Identities=12% Similarity=0.044 Sum_probs=148.7
Q ss_pred CChhccCCCCCCEEEccCCcCCcCCC-ccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccc-----------Cc
Q 005401 322 LPESIARSKNLSELKLFNNKLRGGLP-SELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIY-----------NS 389 (698)
Q Consensus 322 ~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~-----------n~ 389 (698)
+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|++|++++ +.
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 34445555666666666666543322 2245566666666663222222233334556677777762 34
Q ss_pred Cccc-CCccccCCCCCcEEEccCccCcCccCccccC-CCCCCEEEcc----CCccccc-----cchhhhcCCCCCeeecc
Q 005401 390 FSGK-IPQSLGKCRSLRRVRLRHNLLSGSVPEMFWG-LPHMYLFELA----DNSFTGK-----ISKSISGANNLSSLLVS 458 (698)
Q Consensus 390 l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~-----~~~~~~~~~~L~~L~l~ 458 (698)
+++. ++.....+++|++|++..|.+++.....+.. +++|+.|+++ .|.+++. ++..+.++++|+.|+++
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence 4432 2222345778888888777777665555544 7788888885 5666653 34446778899999997
Q ss_pred Ccc--ceeecCccc-cccCCceEEECCCCcccc-cccchhccCCCCCeEEcccCccccc-cchhhhccCCCCEEeCCCCc
Q 005401 459 RNN--FSGSIPDEV-GLLSNLVEFSGDGNKFAG-QIPGSLAKLSQLGNLDLSENELSGG-IPEGIESWKNINELNLANNR 533 (698)
Q Consensus 459 ~n~--l~~~~~~~~-~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~ 533 (698)
+|. +++..+..+ ..+++|++|++++|.+++ .++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|+
T Consensus 445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 543 554444333 348889999999998876 3455567889999999999998754 34445778999999999999
Q ss_pred CcccCCccc-CCCCCCCEEeCCCC
Q 005401 534 LSGEIPSEI-GNLPVLNYLDLSGN 556 (698)
Q Consensus 534 l~~~~~~~~-~~l~~L~~L~Ls~N 556 (698)
+++.-...+ ..++.+....+..+
T Consensus 525 it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 525 ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CCHHHHHHHHHhCCCcEEEEecCc
Confidence 886433333 35566665555544
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.3e-29 Score=257.31 Aligned_cols=274 Identities=20% Similarity=0.221 Sum_probs=204.4
Q ss_pred eeccCCCccccccCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCcc
Q 005401 287 RFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQF 366 (698)
Q Consensus 287 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l 366 (698)
..+.+++.++ .+|..+.. ++++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+
T Consensus 35 ~c~~~~~~l~-~iP~~~~~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLTE-AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EEECCSTTCS-SCCTTCCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeeCCCCCcc-cccccccc-cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 3455555555 34443332 677777777777765555777778888888888888777777777888888888888888
Q ss_pred ceecCcccCCCCCCCEEecccCcCcccCC-ccccCCCCCcEEEccCc-cCcCccCccccCCCCCCEEEccCCccccccch
Q 005401 367 SGEIPEGLCEKGSLEDLVLIYNSFSGKIP-QSLGKCRSLRRVRLRHN-LLSGSVPEMFWGLPHMYLFELADNSFTGKISK 444 (698)
Q Consensus 367 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 444 (698)
++..+..+..+++|++|++++|.+....+ ..+..+++|++|++++| .+....+..|.++++|++|++++|.+++..+.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 75555557777888888888888775443 46777888888888887 46666667778888888888888888877777
Q ss_pred hhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchh---ccCCCCCeEEcccCcccc----ccchh
Q 005401 445 SISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSL---AKLSQLGNLDLSENELSG----GIPEG 517 (698)
Q Consensus 445 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~----~~~~~ 517 (698)
.+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+ .....++.++|+++.+.+ .+|+.
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~ 272 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL 272 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHH
T ss_pred HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHH
Confidence 88888888888888888764333344557888888888888876544333 345678888998888876 36788
Q ss_pred hhccCCCCEEeCCCCcCcccCCcc-cCCCCCCCEEeCCCCcCcccCc
Q 005401 518 IESWKNINELNLANNRLSGEIPSE-IGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 518 ~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
+..+++|++|+|++|+++ .+|.. |..+++|++|++++|++++..|
T Consensus 273 l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 273 LNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 899999999999999999 55655 6999999999999999998665
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=4.5e-28 Score=259.06 Aligned_cols=228 Identities=21% Similarity=0.195 Sum_probs=133.1
Q ss_pred CcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEEC
Q 005401 66 QRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLEL 145 (698)
Q Consensus 66 ~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 145 (698)
.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+....+..|..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 45566666666666655566666666666666666666655566666666666666666666555555666666666666
Q ss_pred CCCcCcccCCcCccCCCCccEEEccC-cccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCC
Q 005401 146 QENNFTGDIPASFGEFTQLESLSLFN-NLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLL 224 (698)
Q Consensus 146 ~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 224 (698)
++|++....+..|.++++|++|++++ +.+....+..|.++++|++|++++|.++ .+| .+..+++|++|++++|.++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--~~~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--DMP-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS--SCC-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc--ccc-cccccccccEEECcCCcCc
Confidence 66666655555566666666666665 3333333344556666666666666555 222 3555556666666666666
Q ss_pred CcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccc
Q 005401 225 GEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLT 296 (698)
Q Consensus 225 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 296 (698)
+..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 555555666666666666666665555555555666666666666555544445555555555555555443
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=6.9e-28 Score=241.03 Aligned_cols=234 Identities=20% Similarity=0.188 Sum_probs=164.2
Q ss_pred CCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCcc-CcCccCccccCCCCCCEEE
Q 005401 354 SPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNL-LSGSVPEMFWGLPHMYLFE 432 (698)
Q Consensus 354 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 432 (698)
++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|. ++...+..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 355555555555555544555555556666666665555555556666666666666665 5555555666666666666
Q ss_pred ccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCcccc
Q 005401 433 LADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSG 512 (698)
Q Consensus 433 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 512 (698)
+++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 66666666666666667777777777777765555567777777777777777776666678888888888888888888
Q ss_pred ccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChh
Q 005401 513 GIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 513 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~ 588 (698)
..|..+..+++|++|+|++|++++..+..+..+++|++|++++|.+.+..+.. .... ++.+..+.+.+.|..|..
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 88888888889999999999998766677888999999999999988654432 1112 566677888888888865
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.4e-27 Score=254.39 Aligned_cols=249 Identities=20% Similarity=0.238 Sum_probs=211.8
Q ss_pred ccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEeccc
Q 005401 308 LESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIY 387 (698)
Q Consensus 308 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~ 387 (698)
...++.++..++ .+|..+. ++++.|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456666666666 5555443 6788888888888887778888888888899988888877778888888899999999
Q ss_pred CcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCC-ccccccchhhhcCCCCCeeeccCccceeec
Q 005401 388 NSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADN-SFTGKISKSISGANNLSSLLVSRNNFSGSI 466 (698)
Q Consensus 388 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 466 (698)
|++....+..|..+++|++|++++|.++...+..|..+++|+.|++++| .+....+..|.++++|++|++++|+++ .+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence 8888777778888899999999999988877778888999999999884 455555567888999999999999987 44
Q ss_pred CccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCC
Q 005401 467 PDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLP 546 (698)
Q Consensus 467 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 546 (698)
| .+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 5 478889999999999999988899999999999999999999998899999999999999999999988888889999
Q ss_pred CCCEEeCCCCcCccc
Q 005401 547 VLNYLDLSGNLFSGK 561 (698)
Q Consensus 547 ~L~~L~Ls~N~l~~~ 561 (698)
+|+.|+|++|.+...
T Consensus 280 ~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 280 HLERIHLHHNPWNCN 294 (440)
T ss_dssp TCCEEECCSSCEECS
T ss_pred CCCEEEcCCCCccCC
Confidence 999999999998763
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1e-27 Score=244.06 Aligned_cols=225 Identities=21% Similarity=0.269 Sum_probs=136.1
Q ss_pred CCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEc
Q 005401 330 KNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRL 409 (698)
Q Consensus 330 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 409 (698)
+.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 55666666666666 44555656666666666666666 56666666666666666666666 55666666667777777
Q ss_pred cCccCcCccCcccc---------CCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEE
Q 005401 410 RHNLLSGSVPEMFW---------GLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFS 480 (698)
Q Consensus 410 ~~n~l~~~~~~~~~---------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 480 (698)
++|.+.+.+|..+. ++++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|..+..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 66666655555443 3556666666665555 444555556666666666666552 344455555566666
Q ss_pred CCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCc
Q 005401 481 GDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 481 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 559 (698)
+++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+.++++|++|+|++|++.+.+|..++++++|+.+++..|.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 6665555555555555566666666665555555555555666666666666555556666666666666655555444
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.2e-28 Score=250.12 Aligned_cols=264 Identities=20% Similarity=0.147 Sum_probs=201.7
Q ss_pred cEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccC
Q 005401 309 ESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYN 388 (698)
Q Consensus 309 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n 388 (698)
+..+++.+.+.......+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 344555555544444445556778888888888887777778888888888888888876554 777888888888888
Q ss_pred cCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCc
Q 005401 389 SFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPD 468 (698)
Q Consensus 389 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 468 (698)
.+.+.. ..++|++|++++|.+++..+. .+++|+.|++++|++++..+..+..+++|++|++++|.+++..+.
T Consensus 91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 91 YVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp EEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred cccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 877432 347888888888888866544 357788888888888887777888888888888888888877666
Q ss_pred cc-cccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCC
Q 005401 469 EV-GLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPV 547 (698)
Q Consensus 469 ~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 547 (698)
.+ ..+++|++|++++|.+++..+ ...+++|++|+|++|.+++. |..+..+++|++|+|++|+++ .+|..+..+++
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~ 238 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTT
T ss_pred HHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCC
Confidence 65 467888999999888876522 33588999999999999854 445888999999999999998 57888888999
Q ss_pred CCEEeCCCCcCc-ccCcccccccc-cCeEEcccC-cCcccCC
Q 005401 548 LNYLDLSGNLFS-GKIPLELQNLR-LNVLNLSNN-RLSGELP 586 (698)
Q Consensus 548 L~~L~Ls~N~l~-~~~p~~~~~~~-L~~L~ls~N-~l~~~~~ 586 (698)
|+.|++++|.++ +..|..+..++ |+.++++++ .+.+..|
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 999999999998 67777777776 888888744 4555433
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=6.5e-29 Score=251.55 Aligned_cols=201 Identities=22% Similarity=0.231 Sum_probs=114.0
Q ss_pred CCCCCEEecccCcCcccCCccc--cCCCCCcEEEccCccCcCccCccccCC-----CCCCEEEccCCccccccchhhhcC
Q 005401 377 KGSLEDLVLIYNSFSGKIPQSL--GKCRSLRRVRLRHNLLSGSVPEMFWGL-----PHMYLFELADNSFTGKISKSISGA 449 (698)
Q Consensus 377 ~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~~ 449 (698)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 3444444444444444444333 4444444444444444443 3333333 445555555555544444445555
Q ss_pred CCCCeeeccCccceee--cCccc--cccCCceEEECCCCcccc---cccchhccCCCCCeEEcccCccccccc-hhhhcc
Q 005401 450 NNLSSLLVSRNNFSGS--IPDEV--GLLSNLVEFSGDGNKFAG---QIPGSLAKLSQLGNLDLSENELSGGIP-EGIESW 521 (698)
Q Consensus 450 ~~L~~L~l~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l 521 (698)
++|++|++++|++.+. .+..+ ..+++|++|++++|.+.+ .....+..+++|++|+|++|.+++..| ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 5555555555554432 12222 555666666666666652 122334566777777777777776554 345566
Q ss_pred CCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcc
Q 005401 522 KNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSG 583 (698)
Q Consensus 522 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~ 583 (698)
++|++|+|++|+++ .+|..+. ++|++||+++|++++. |. +..++ |++|++++|++++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 77777777777777 6666665 6777777777777765 44 66665 7777777777764
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.3e-27 Score=256.63 Aligned_cols=244 Identities=21% Similarity=0.154 Sum_probs=193.5
Q ss_pred CCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEE
Q 005401 329 SKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVR 408 (698)
Q Consensus 329 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 408 (698)
+++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+.+.. ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 3478888888888887777788888888888888888876655 778888888888888887543 237888888
Q ss_pred ccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCcccc-ccCCceEEECCCCccc
Q 005401 409 LRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVG-LLSNLVEFSGDGNKFA 487 (698)
Q Consensus 409 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~ 487 (698)
+++|.+++..+. .+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 888888876554 457888888888888888888888888888889988888887777765 6888889999888888
Q ss_pred ccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCc-ccCcccc
Q 005401 488 GQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFS-GKIPLEL 566 (698)
Q Consensus 488 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~ 566 (698)
+..+ ...+++|++|+|++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 6633 3458889999999999986544 48888999999999999984 6777888899999999999988 5666666
Q ss_pred cccc-cCeEEcc-------cCcCcccCC
Q 005401 567 QNLR-LNVLNLS-------NNRLSGELP 586 (698)
Q Consensus 567 ~~~~-L~~L~ls-------~N~l~~~~~ 586 (698)
..++ ++.++++ .|++.|.++
T Consensus 259 ~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 259 SKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp TTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred HhCCCCcEEeccccccccCCCcccccCC
Confidence 6665 7777776 666666655
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2.3e-26 Score=228.72 Aligned_cols=214 Identities=20% Similarity=0.215 Sum_probs=155.8
Q ss_pred CCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeecc
Q 005401 379 SLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVS 458 (698)
Q Consensus 379 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 458 (698)
++++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444455555566666666666555555556666666666666666665555666666677777777
Q ss_pred CccceeecCccccccCCceEEECCCCccccc-ccchhccCCCCCeEEcccCccccccchhhhccCCCC----EEeCCCCc
Q 005401 459 RNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQ-IPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNIN----ELNLANNR 533 (698)
Q Consensus 459 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~N~ 533 (698)
+|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..+..+.+|+ +|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 7776655555677777788888888877763 577888889999999999999887777887777777 89999999
Q ss_pred CcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChh-hhhhc
Q 005401 534 LSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL-YAKEM 593 (698)
Q Consensus 534 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~-~~~~~ 593 (698)
+++..+..+. ..+|++|++++|.+++..+..+..++ |++|++++|+++|.||.. |...|
T Consensus 189 l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~ 249 (276)
T 2z62_A 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 249 (276)
T ss_dssp CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred ccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHH
Confidence 9966655554 45899999999999988777788887 999999999999999844 44444
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.1e-28 Score=246.58 Aligned_cols=251 Identities=22% Similarity=0.247 Sum_probs=148.3
Q ss_pred cccccccceeccCCCccccccCcccccccccEEEccCcccc-ccCChhcc-------CCCCCCEEEccCCcCCcCCCccc
Q 005401 279 WVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLE-GTLPESIA-------RSKNLSELKLFNNKLRGGLPSEL 350 (698)
Q Consensus 279 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~l 350 (698)
+...++|+.+++++|.+ .+|..+... ++.|++++|.+. ..+|..+. ++++|++|++++|++++..|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI-IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH-HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH-HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 34455666666666666 444433332 555555555553 23333332 34445555555555544444433
Q ss_pred cCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCC-----CCCcEEEccCccCcCccCccccCC
Q 005401 351 GKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKC-----RSLRRVRLRHNLLSGSVPEMFWGL 425 (698)
Q Consensus 351 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l 425 (698)
. +..+++|++|++++|.+.+. |..+..+ ++|++|++++|++++..+..|..+
T Consensus 116 ~----------------------~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 116 L----------------------EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp S----------------------SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred H----------------------HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 0 04444555555555555443 4444443 555666666665555555555566
Q ss_pred CCCCEEEccCCccccc--cchhh--hcCCCCCeeeccCcccee--ecC-ccccccCCceEEECCCCccccccc-chhccC
Q 005401 426 PHMYLFELADNSFTGK--ISKSI--SGANNLSSLLVSRNNFSG--SIP-DEVGLLSNLVEFSGDGNKFAGQIP-GSLAKL 497 (698)
Q Consensus 426 ~~L~~L~l~~n~l~~~--~~~~~--~~~~~L~~L~l~~n~l~~--~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l 497 (698)
++|++|++++|++.+. .+..+ ..+++|++|++++|++++ ..+ ..+..+++|++|++++|.+.+..| ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 6666666666655443 12222 556666666666666652 111 233456677777777777776553 345567
Q ss_pred CCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcc
Q 005401 498 SQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 498 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 560 (698)
++|++|+|++|.++ .+|..+. ++|++|+|++|++++. |. +..+++|++|++++|++++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 88888888888888 6666665 7888889999988855 65 8888899999999998875
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=2.2e-30 Score=288.13 Aligned_cols=465 Identities=15% Similarity=0.117 Sum_probs=216.0
Q ss_pred CCcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCccc---CCcC------------CcCCCCCC
Q 005401 53 PCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSS---LPLD------------ISTCRNLT 117 (698)
Q Consensus 53 ~C~w~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~---~~~~------------~~~l~~L~ 117 (698)
|++|.++... ..+.+++..+... .....+.++++|++|+++++..... .|.. ...+++|+
T Consensus 34 ck~W~~~~~~----~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~ 108 (594)
T 2p1m_B 34 CKSWYEIERW----CRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE 108 (594)
T ss_dssp CHHHHHHHHH----HCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred HHHHHHhhhh----hceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCC
Confidence 4578877321 2335555554322 2234567788999999988743211 1111 23456677
Q ss_pred EEECCCCCCcccCccccC-CCCCCCEEECCCC-cCccc-CCcCccCCCCccEEEccCcccCCccCccc----cCcCCCcE
Q 005401 118 DLNLGSNLLVGAIPATLS-QLKNLKSLELQEN-NFTGD-IPASFGEFTQLESLSLFNNLLNGTISSSL----GNISTLKE 190 (698)
Q Consensus 118 ~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~ 190 (698)
+|++++|.+.+..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+ ..+++|++
T Consensus 109 ~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~ 188 (594)
T 2p1m_B 109 EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188 (594)
T ss_dssp EEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCE
T ss_pred eEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcE
Confidence 777776666555444443 4666666666666 33321 22223356666666666666554333222 24445555
Q ss_pred eeccCCC--CCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccC
Q 005401 191 LRLAYNP--FQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFK 268 (698)
Q Consensus 191 L~ls~n~--~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 268 (698)
|++++|. +....++....++++|++|++++|...+.++..+..+++|+.|+++.+... +..
T Consensus 189 L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-----------------~~~ 251 (594)
T 2p1m_B 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE-----------------VRP 251 (594)
T ss_dssp EECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC-----------------CCH
T ss_pred EEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc-----------------cch
Confidence 5555554 110011111223455555555554211123344444555555554333210 111
Q ss_pred CcceeccCccccccccccee-ccCCCccccccCcccccc-cccEEEccCcccccc-CChhccCCCCCCEEEccCCcCCcC
Q 005401 269 NSLSGELPVKWVNMTTLLRF-DASMNQLTGTIPNELCEL-QLESLNLYENRLEGT-LPESIARSKNLSELKLFNNKLRGG 345 (698)
Q Consensus 269 n~~~~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~ 345 (698)
+.+.+ ++..+.++++|+.+ .+..... +.++..+... +|++|++++|.+++. +...+..+++|++|++++| +++.
T Consensus 252 ~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~ 328 (594)
T 2p1m_B 252 DVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA 328 (594)
T ss_dssp HHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH
T ss_pred hhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH
Confidence 22222 22244555555555 2221111 1111111111 344444444443321 1112334455555555544 2211
Q ss_pred C-CccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccc-cCCCCCcEEEccCccCcCccCcccc
Q 005401 346 L-PSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSL-GKCRSLRRVRLRHNLLSGSVPEMFW 423 (698)
Q Consensus 346 ~-~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~ 423 (698)
. +.....+++|++|+++++.-.| ....+.+++.....+ .++++|+.|.+..|.+++.....+.
T Consensus 329 ~l~~l~~~~~~L~~L~L~~~~~~g---------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~ 393 (594)
T 2p1m_B 329 GLEVLASTCKDLRELRVFPSEPFV---------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA 393 (594)
T ss_dssp HHHHHHHHCTTCCEEEEECSCTTC---------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCcccc---------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH
Confidence 1 1111234445555442210000 001122221111111 1245555555555555543333332
Q ss_pred -CCCCCCEEEcc--C----Ccccc-----ccchhhhcCCCCCeeeccCccceeecCccccc-cCCceEEECCCCcccccc
Q 005401 424 -GLPHMYLFELA--D----NSFTG-----KISKSISGANNLSSLLVSRNNFSGSIPDEVGL-LSNLVEFSGDGNKFAGQI 490 (698)
Q Consensus 424 -~l~~L~~L~l~--~----n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~ 490 (698)
.+++|+.|+++ + +.++. ..+..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..
T Consensus 394 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~ 472 (594)
T 2p1m_B 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG 472 (594)
T ss_dssp HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence 35555666555 2 33331 1122245566777777765 444333333333 667777777777765544
Q ss_pred cchh-ccCCCCCeEEcccCccccccch-hhhccCCCCEEeCCCCcCcccCCccc-CCCCCCCEEeCCCCcC
Q 005401 491 PGSL-AKLSQLGNLDLSENELSGGIPE-GIESWKNINELNLANNRLSGEIPSEI-GNLPVLNYLDLSGNLF 558 (698)
Q Consensus 491 ~~~~-~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l 558 (698)
...+ ..+++|++|+|++|.+++.... ....+++|++|++++|+++......+ ..++.|+...+..+.-
T Consensus 473 ~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 473 MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred HHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 4333 5577788888888777544333 33457778888888887754333333 4456676666665543
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.9e-29 Score=280.70 Aligned_cols=380 Identities=16% Similarity=0.163 Sum_probs=208.1
Q ss_pred CCCccEEEccCcccCCccCcccc-CcCCCcEeeccCC-CCCCCCCcccccCCCCCCEEEcccCCCCCcCCccc----cCC
Q 005401 161 FTQLESLSLFNNLLNGTISSSLG-NISTLKELRLAYN-PFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESL----TRL 234 (698)
Q Consensus 161 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ls~n-~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l----~~l 234 (698)
+++|++|++++|.+++..+..+. .+++|++|++++| .++...++..+.++++|++|++++|.+++..+..+ ..+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 34444444444444433333332 3444555555444 22211122223344555555555555443322222 244
Q ss_pred CCCCEEEccCCC--Ccc-cCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccccccEE
Q 005401 235 TKLKNLDLSFNG--LTG-SIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESL 311 (698)
Q Consensus 235 ~~L~~L~l~~n~--l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 311 (698)
++|++|++++|. +.. .++..+..+++|++|++++|...+.++..+..+++|+.|+++.+..
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~---------------- 247 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA---------------- 247 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC----------------
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC----------------
Confidence 566666666554 110 0111123346666666666522222445555666666665543321
Q ss_pred EccCccccccCChhccCCCCCCEE-EccCCcCCcCCCccccCCCCCCEEEcccCccceec-CcccCCCCCCCEEecccCc
Q 005401 312 NLYENRLEGTLPESIARSKNLSEL-KLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEI-PEGLCEKGSLEDLVLIYNS 389 (698)
Q Consensus 312 ~l~~n~l~~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~-~~~~~~~~~L~~L~L~~n~ 389 (698)
++..+.+.+ ++..+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++.. ...+..+++|++|++++|
T Consensus 248 ~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~- 324 (594)
T 2p1m_B 248 EVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY- 324 (594)
T ss_dssp CCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-
T ss_pred ccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-
Confidence 012223332 33456777778777 3333222 233444456778888888888765432 223456788888888877
Q ss_pred Cccc-CCccccCCCCCcEEEcc---------CccCcCccCccc-cCCCCCCEEEccCCccccccchhhh-cCCCCCeeec
Q 005401 390 FSGK-IPQSLGKCRSLRRVRLR---------HNLLSGSVPEMF-WGLPHMYLFELADNSFTGKISKSIS-GANNLSSLLV 457 (698)
Q Consensus 390 l~~~-~~~~~~~l~~L~~L~l~---------~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l 457 (698)
+... ++.....+++|++|++. .+.+++.....+ .++++|+.|.+..|.+++.....+. .+++|+.|++
T Consensus 325 ~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L 404 (594)
T 2p1m_B 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL 404 (594)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEE
T ss_pred cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEe
Confidence 3322 22233457888888883 345544333233 3478888888888888766555554 5788888888
Q ss_pred c--C----ccceee-----cCccccccCCceEEECCCCcccccccchhcc-CCCCCeEEcccCccccccchhh-hccCCC
Q 005401 458 S--R----NNFSGS-----IPDEVGLLSNLVEFSGDGNKFAGQIPGSLAK-LSQLGNLDLSENELSGGIPEGI-ESWKNI 524 (698)
Q Consensus 458 ~--~----n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L 524 (698)
+ + +.++.. ++..+..+++|++|++++ .+++..+..+.. +++|++|+|++|.+++..+..+ ..+++|
T Consensus 405 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483 (594)
T ss_dssp EESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred ecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence 8 3 444421 112245677888888866 555444444444 7778888888887765544444 567788
Q ss_pred CEEeCCCCcCcccCCc-ccCCCCCCCEEeCCCCcCcc
Q 005401 525 NELNLANNRLSGEIPS-EIGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 525 ~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~ 560 (698)
++|+|++|.+++..+. ....+++|++|++++|+++.
T Consensus 484 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 8888888877543332 33456778888888887753
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=8e-28 Score=244.10 Aligned_cols=265 Identities=18% Similarity=0.134 Sum_probs=217.4
Q ss_pred eeccCCCccccccCcccccc-cccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCc
Q 005401 287 RFDASMNQLTGTIPNELCEL-QLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQ 365 (698)
Q Consensus 287 ~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~ 365 (698)
..+++.+.+.......+... +|++|++++|.+++..|..+..+++|++|++++|++++..+ +..+++|++|++++|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 33455555443322222223 68888888888887777888999999999999999987654 8899999999999999
Q ss_pred cceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchh
Q 005401 366 FSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKS 445 (698)
Q Consensus 366 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 445 (698)
+++.. ..++|++|++++|.+.+..+.. +++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..
T Consensus 92 l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 92 VQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred ccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 98543 2379999999999998765443 678999999999999988889999999999999999999887777
Q ss_pred h-hcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCC
Q 005401 446 I-SGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNI 524 (698)
Q Consensus 446 ~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 524 (698)
+ ..+++|++|++++|.+++. +. ...+++|++|++++|.+++..+ .+..+++|++|+|++|+++ .+|..+..+++|
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L 239 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred HhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCC
Confidence 6 4789999999999999865 32 3358999999999999996544 5889999999999999999 568889999999
Q ss_pred CEEeCCCCcCc-ccCCcccCCCCCCCEEeCC-CCcCcccCccc
Q 005401 525 NELNLANNRLS-GEIPSEIGNLPVLNYLDLS-GNLFSGKIPLE 565 (698)
Q Consensus 525 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls-~N~l~~~~p~~ 565 (698)
++|+|++|.+. +.+|..+..++.|+.|+++ .+.+++..|..
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 99999999998 7888899999999999998 44566555543
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.6e-25 Score=221.71 Aligned_cols=218 Identities=23% Similarity=0.268 Sum_probs=189.4
Q ss_pred CCCcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCc
Q 005401 52 TPCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIP 131 (698)
Q Consensus 52 ~~C~w~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 131 (698)
+.|.|.|+.|... ..++.++++++.++.. |..+. +++++|+|++|.+++..+.+|.++++|++|++++|.+....+
T Consensus 3 ~~C~~~~~~C~c~-~~~~~l~~~~~~l~~i-p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 3 ALCKKDGGVCSCN-NNKNSVDCSSKKLTAI-PSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp CCBGGGTCSBEEE-TTTTEEECTTSCCSSC-CSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred ccCCCCCCCCEeC-CCCCEEEccCCCCCcc-CCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 6899999998642 3567899999999864 44343 689999999999998888899999999999999999998777
Q ss_pred cccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCC
Q 005401 132 ATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLT 211 (698)
Q Consensus 132 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~ 211 (698)
..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ ...+..+..++
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~ 157 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLT 157 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCc
Confidence 88899999999999999999877788899999999999999999888888999999999999999988 33344578899
Q ss_pred CCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcceec
Q 005401 212 NLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGE 274 (698)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 274 (698)
+|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+...
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 999999999999988877888999999999999999877666788889999999999887643
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=4.6e-26 Score=249.12 Aligned_cols=177 Identities=25% Similarity=0.301 Sum_probs=111.5
Q ss_pred CCCCCCCCCCCCCcccccccC------CCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCC
Q 005401 42 LASWDDTRVDTPCHWRGVSCD------PLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRN 115 (698)
Q Consensus 42 ~~~w~~~~~~~~C~w~g~~c~------~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 115 (698)
+..|.... ++|.|++..|. ....+++.|+++++.++ .+|..+. ++|++|+|++|.++.+ |. .+++
T Consensus 12 w~~W~~~~--~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~l-p~---~l~~ 82 (622)
T 3g06_A 12 WSAWRRAA--PAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPE 82 (622)
T ss_dssp HHHHHHTC--CGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCC-CC---CCTT
T ss_pred HHHHHhcC--CcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCC-CC---cCCC
Confidence 45576554 67888664321 11235788888888888 4444443 7888888888888753 33 5678
Q ss_pred CCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccC
Q 005401 116 LTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAY 195 (698)
Q Consensus 116 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~ 195 (698)
|++|+|++|.++. +|. .+++|++|++++|.+++. |. .+++|++|++++|.++... .. +++|++|++++
T Consensus 83 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp-~~---l~~L~~L~Ls~ 150 (622)
T 3g06_A 83 LRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLP-VL---PPGLQELSVSD 150 (622)
T ss_dssp CCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSCCC-CC---CTTCCEEECCS
T ss_pred CCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCcCC-CC---CCCCCEEECcC
Confidence 8888888888774 343 567788888888877743 33 4567777777777776532 22 36677777777
Q ss_pred CCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCc
Q 005401 196 NPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLT 248 (698)
Q Consensus 196 n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 248 (698)
|.++ .+|. .+++|+.|++++|.+++. | ..+++|+.|++++|.++
T Consensus 151 N~l~--~l~~---~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 151 NQLA--SLPA---LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLA 194 (622)
T ss_dssp SCCS--CCCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS
T ss_pred CcCC--CcCC---ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCC
Confidence 7665 3333 234566666666666542 2 33455666666666555
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=3e-25 Score=219.68 Aligned_cols=205 Identities=23% Similarity=0.263 Sum_probs=152.7
Q ss_pred CCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccC
Q 005401 380 LEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSR 459 (698)
Q Consensus 380 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 459 (698)
.+.++++++.++. +|..+. +++++|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 3445555555442 333222 3455566666655555555556666666666666666555555556666777777777
Q ss_pred ccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCC
Q 005401 460 NNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIP 539 (698)
Q Consensus 460 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 539 (698)
|++.+..+..+..+++|++|++++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 77765555666777788888888888877777778889999999999999997777778999999999999999997777
Q ss_pred cccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCCh
Q 005401 540 SEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPP 587 (698)
Q Consensus 540 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~ 587 (698)
..|..+++|++|++++|++++..+..+..++ |+.|++++|+|.|.|+.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 7899999999999999999988777788777 99999999999999983
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.3e-24 Score=237.60 Aligned_cols=147 Identities=24% Similarity=0.336 Sum_probs=89.0
Q ss_pred CCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEEC
Q 005401 402 RSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSG 481 (698)
Q Consensus 402 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 481 (698)
++|+.|++++|.+++. | ..+++|+.|++++|.+++... ..++|+.|++++|.++ .+|. .+++|+.|++
T Consensus 161 ~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~L 228 (622)
T 3g06_A 161 SELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIV 228 (622)
T ss_dssp TTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEc
Confidence 3444455555544432 2 233455555555555543211 1245666666666665 2332 2356777777
Q ss_pred CCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCccc
Q 005401 482 DGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGK 561 (698)
Q Consensus 482 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 561 (698)
++|.+++ +| ..+++|++|+|++|.++. +|. .+++|++|+|++|+++ .+|..|.++++|+.|+|++|.+++.
T Consensus 229 s~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 229 SGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred cCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence 7776664 33 345677777777777773 444 5567778888888877 6677777788888888888888777
Q ss_pred Cccccccc
Q 005401 562 IPLELQNL 569 (698)
Q Consensus 562 ~p~~~~~~ 569 (698)
.|..+..+
T Consensus 300 ~~~~l~~L 307 (622)
T 3g06_A 300 TLQALREI 307 (622)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHhc
Confidence 77666543
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1e-24 Score=216.91 Aligned_cols=209 Identities=24% Similarity=0.225 Sum_probs=168.2
Q ss_pred CCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEc
Q 005401 90 PYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSL 169 (698)
Q Consensus 90 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 169 (698)
++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 47888888888888887778888888888888888888777778888888888888888888777788888888888888
Q ss_pred cCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCC----EEEccCC
Q 005401 170 FNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLK----NLDLSFN 245 (698)
Q Consensus 170 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~l~~n 245 (698)
++|.+++..+..+.++++|++|++++|.++...+|..+.++++|++|++++|++++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 888888777777888888888888888887555788888888888888888888877777776666666 7888888
Q ss_pred CCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCcccccc
Q 005401 246 GLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTI 299 (698)
Q Consensus 246 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 299 (698)
.+++..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|.+++..
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 88855554443 347888888888888666666677788888888887777543
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.6e-26 Score=245.37 Aligned_cols=225 Identities=19% Similarity=0.153 Sum_probs=197.8
Q ss_pred CCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEE
Q 005401 352 KYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLF 431 (698)
Q Consensus 352 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 431 (698)
.+++|++|++++|.+++..|..|..+++|+.|+|++|.+.+..| +..+++|++|++++|.+++..+ .++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34489999999999998888899999999999999999997765 8999999999999999986543 3899999
Q ss_pred EccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhc-cCCCCCeEEcccCcc
Q 005401 432 ELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLA-KLSQLGNLDLSENEL 510 (698)
Q Consensus 432 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l 510 (698)
++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|+|++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999987664 357899999999999988898999999999999999999998888876 799999999999999
Q ss_pred ccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhh
Q 005401 511 SGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLY 589 (698)
Q Consensus 511 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~ 589 (698)
++..+ ...+++|++|+|++|.+++ +|..+..+++|+.|+|++|.+++ +|..+..++ |+.|++++|++.|.++..+
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 97633 3468999999999999996 55569999999999999999996 566777776 9999999999997655443
Q ss_pred h
Q 005401 590 A 590 (698)
Q Consensus 590 ~ 590 (698)
+
T Consensus 258 ~ 258 (487)
T 3oja_A 258 F 258 (487)
T ss_dssp H
T ss_pred H
Confidence 3
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=5.3e-25 Score=219.59 Aligned_cols=211 Identities=22% Similarity=0.188 Sum_probs=153.4
Q ss_pred CCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeee
Q 005401 377 KGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLL 456 (698)
Q Consensus 377 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 456 (698)
++++++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|+.|++++|.+++..+. ..+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEE
T ss_pred cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEE
Confidence 344444444444444 2222221 3455555555555555555555555555555555555543332 4567777777
Q ss_pred ccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcc
Q 005401 457 VSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSG 536 (698)
Q Consensus 457 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 536 (698)
+++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 7777776 566677788888888888888887777889999999999999999998888888999999999999999997
Q ss_pred cCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhcC
Q 005401 537 EIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMY 594 (698)
Q Consensus 537 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~ 594 (698)
..+..|..+++|++|+|++|+++. +|..+.... |+.+++++|+|.|.|...|+..|.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl 220 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL 220 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHH
T ss_pred cCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccCcCccHHHHHHH
Confidence 666778899999999999999994 555555554 999999999999999766665553
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.2e-23 Score=208.34 Aligned_cols=183 Identities=21% Similarity=0.226 Sum_probs=117.4
Q ss_pred ccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCce
Q 005401 398 LGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLV 477 (698)
Q Consensus 398 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 477 (698)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 44444555555555554432 2444555555555555555555444555556666666666666555555556666666
Q ss_pred EEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCc
Q 005401 478 EFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNL 557 (698)
Q Consensus 478 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 557 (698)
+|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+|++|++++..|..|..+++|++|++++|.
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 66666666665555566777777777777777776666667777777777777777777666667777777788887777
Q ss_pred CcccCcccccccccCeEEcccCcCcccCChh
Q 005401 558 FSGKIPLELQNLRLNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 558 l~~~~p~~~~~~~L~~L~ls~N~l~~~~~~~ 588 (698)
+.+..|. ++.+++++|.++|.+|..
T Consensus 217 ~~~~~~~------l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 217 WDCTCPG------IRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp BCCCTTT------THHHHHHHHHTGGGBBCT
T ss_pred ccccCcH------HHHHHHHHHhCCCcccCc
Confidence 7765442 666777777777777744
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=3.6e-23 Score=206.26 Aligned_cols=204 Identities=21% Similarity=0.197 Sum_probs=142.8
Q ss_pred cCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCE
Q 005401 351 GKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYL 430 (698)
Q Consensus 351 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 430 (698)
..++++++++++++.++ .+|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+++..+. ..+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 33444455555544444 2232222 3455555555555555455555555555555555555543332 45666666
Q ss_pred EEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCcc
Q 005401 431 FELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENEL 510 (698)
Q Consensus 431 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 510 (698)
|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+..|..+++|++|+|++|++
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 666666665 3445566677777777777777766667778888888888888888877777788899999999999999
Q ss_pred ccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCccc
Q 005401 511 SGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGK 561 (698)
Q Consensus 511 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 561 (698)
++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|.+...
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 9777777888999999999999999 7788888889999999999999764
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=8.8e-23 Score=202.04 Aligned_cols=176 Identities=27% Similarity=0.274 Sum_probs=83.4
Q ss_pred cEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECC
Q 005401 67 RVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQ 146 (698)
Q Consensus 67 ~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 146 (698)
+++.|+++++.++.. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 344555555544422 1244455555555555554432 244455555555555555554444444555555555555
Q ss_pred CCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCc
Q 005401 147 ENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGE 226 (698)
Q Consensus 147 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 226 (698)
+|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++ ...+..+..+++|++|++++|++++.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCCcc
Confidence 55555444444445555555555555554444444444455555555555444 22222334444444444444444444
Q ss_pred CCccccCCCCCCEEEccCCCC
Q 005401 227 IPESLTRLTKLKNLDLSFNGL 247 (698)
Q Consensus 227 ~~~~l~~l~~L~~L~l~~n~l 247 (698)
.+..+..+++|+.|++++|.+
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCB
T ss_pred CHHHHhCCcCCCEEEccCCCc
Confidence 444444444444444444443
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=9.2e-23 Score=199.36 Aligned_cols=191 Identities=26% Similarity=0.241 Sum_probs=154.6
Q ss_pred CCCcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCc
Q 005401 52 TPCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIP 131 (698)
Q Consensus 52 ~~C~w~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 131 (698)
+||.|.|.+|.. ..+.++++++.++... ..+. +++++|+|++|.+.+..+..|.++++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~~p-~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDSVP-SGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSSCC-SCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCccccC-CCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 577999999953 3457899999888543 3343 589999999999999888889999999999999999998888
Q ss_pred cccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCC
Q 005401 132 ATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLT 211 (698)
Q Consensus 132 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~ 211 (698)
..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ ...+..+..++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 155 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLT 155 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCc
Confidence 88899999999999999998777778888899999999999888777777788888888888888877 23334677778
Q ss_pred CCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcc
Q 005401 212 NLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTG 249 (698)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 249 (698)
+|++|++++|++++..+..+..+++|+.|++++|++..
T Consensus 156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 88888888888877766677777777777777777764
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=8.7e-25 Score=228.66 Aligned_cols=246 Identities=22% Similarity=0.249 Sum_probs=121.6
Q ss_pred cCChhccCCCCCCEEEccCCcCCcCCCc----cccCCCCCCEEEcccCc---cceecCccc-------CCCCCCCEEecc
Q 005401 321 TLPESIARSKNLSELKLFNNKLRGGLPS----ELGKYSPLTTLDLSYNQ---FSGEIPEGL-------CEKGSLEDLVLI 386 (698)
Q Consensus 321 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~l~~~~~L~~L~ls~n~---l~~~~~~~~-------~~~~~L~~L~L~ 386 (698)
.++..+..+++|++|++++|.+++..+. .+..+++|++|++++|. +++.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3445566666777777777766654332 24456666666666642 333333332 344555555555
Q ss_pred cCcCcc----cCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcC---------CCCC
Q 005401 387 YNSFSG----KIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGA---------NNLS 453 (698)
Q Consensus 387 ~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---------~~L~ 453 (698)
+|.+.. .++..+..+++|++|++++|.++...+..+.. .+..+ ++|+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------ALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------HHHHHHHHHHHHTCCCCC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------HHHHHhhhhhcccCCCCc
Confidence 555544 23344445555555555555554322222211 11111 4444
Q ss_pred eeeccCccce-eecC---ccccccCCceEEECCCCcccc-----cccchhccCCCCCeEEcccCccc----cccchhhhc
Q 005401 454 SLLVSRNNFS-GSIP---DEVGLLSNLVEFSGDGNKFAG-----QIPGSLAKLSQLGNLDLSENELS----GGIPEGIES 520 (698)
Q Consensus 454 ~L~l~~n~l~-~~~~---~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~ 520 (698)
+|++++|+++ +..+ ..+..+++|++|++++|.+.. ..+..+..+++|++|+|++|.++ ..+|..+..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 5555544443 1122 233344455555555554441 22224455555555555555553 344555555
Q ss_pred cCCCCEEeCCCCcCccc----CCcccC--CCCCCCEEeCCCCcCcc----cCcccc-cccc-cCeEEcccCcCcccCC
Q 005401 521 WKNINELNLANNRLSGE----IPSEIG--NLPVLNYLDLSGNLFSG----KIPLEL-QNLR-LNVLNLSNNRLSGELP 586 (698)
Q Consensus 521 l~~L~~L~Ls~N~l~~~----~~~~~~--~l~~L~~L~Ls~N~l~~----~~p~~~-~~~~-L~~L~ls~N~l~~~~~ 586 (698)
+++|++|+|++|.+++. ++..+. .+++|++|+|++|.+++ .+|..+ ..++ |++|++++|++++..+
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 55555555555555543 334442 25556666666666555 244444 3333 5666666666655543
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.1e-24 Score=225.42 Aligned_cols=256 Identities=19% Similarity=0.165 Sum_probs=118.9
Q ss_pred EEccCccccccCChhccCCCCCCEEEccCCcCCcCCC----ccccCCC-CCCEEEcccCccceecCcccCCC-----CCC
Q 005401 311 LNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLP----SELGKYS-PLTTLDLSYNQFSGEIPEGLCEK-----GSL 380 (698)
Q Consensus 311 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~~~-~L~~L~ls~n~l~~~~~~~~~~~-----~~L 380 (698)
+.++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+... ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3455555555555555555556666666666665544 4455555 56666666666655444444332 555
Q ss_pred CEEecccCcCcccCCccc----cCC-CCCcEEEccCccCcCccCccc----cC-CCCCCEEEccCCccccccchhhhcCC
Q 005401 381 EDLVLIYNSFSGKIPQSL----GKC-RSLRRVRLRHNLLSGSVPEMF----WG-LPHMYLFELADNSFTGKISKSISGAN 450 (698)
Q Consensus 381 ~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~~~~~~~~~ 450 (698)
++|++++|.+.+..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.....+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l---- 158 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL---- 158 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH----
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH----
Confidence 555555555554443322 222 455555555555554333222 12 2345555555555443222111
Q ss_pred CCCeeeccCccceeecCccccccC-CceEEECCCCcccccccch----hccC-CCCCeEEcccCccccc----cchhhhc
Q 005401 451 NLSSLLVSRNNFSGSIPDEVGLLS-NLVEFSGDGNKFAGQIPGS----LAKL-SQLGNLDLSENELSGG----IPEGIES 520 (698)
Q Consensus 451 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~Ls~n~l~~~----~~~~~~~ 520 (698)
+..+..++ +|++|++++|.+.+..+.. +..+ ++|++|||++|.+++. ++..+..
T Consensus 159 ----------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 159 ----------------IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp ----------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred ----------------HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 11112222 4444444444444333322 2222 3555555555555432 2233333
Q ss_pred -cCCCCEEeCCCCcCcccCC----cccCCCCCCCEEeCCCCcCcccCcc-------cccccc-cCeEEcccCcCcccCC
Q 005401 521 -WKNINELNLANNRLSGEIP----SEIGNLPVLNYLDLSGNLFSGKIPL-------ELQNLR-LNVLNLSNNRLSGELP 586 (698)
Q Consensus 521 -l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~p~-------~~~~~~-L~~L~ls~N~l~~~~~ 586 (698)
.++|++|+|++|.+++..+ ..+..+++|++|++++|.+....+. .+..++ |+.||+++|++....+
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 2355555555555543222 2234445555555555553332221 223333 5555555555555433
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=8.2e-23 Score=199.74 Aligned_cols=188 Identities=20% Similarity=0.214 Sum_probs=142.0
Q ss_pred CcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCC
Q 005401 404 LRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDG 483 (698)
Q Consensus 404 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 483 (698)
.++++++++.++. +|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 4455555555553 222222 4566666666666666666666667777777777777766666677777777778877
Q ss_pred CcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCc
Q 005401 484 NKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 484 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|+.+++|++|+|++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 77776667778888899999999999987777778889999999999999997777789999999999999999998888
Q ss_pred ccccccc-cCeEEcccCcCccc-CChhhhhhcC
Q 005401 564 LELQNLR-LNVLNLSNNRLSGE-LPPLYAKEMY 594 (698)
Q Consensus 564 ~~~~~~~-L~~L~ls~N~l~~~-~~~~~~~~~~ 594 (698)
..+..++ |+.|++++|+++|. |...++..|.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~ 205 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCSRCEILYLSQWI 205 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHH
T ss_pred HHHhCCCCCCEEEeeCCceeCCccccHHHHHHH
Confidence 8888877 99999999999998 5554554443
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=2e-24 Score=223.45 Aligned_cols=228 Identities=18% Similarity=0.187 Sum_probs=152.3
Q ss_pred EEcccCccceecCcccCCCCCCCEEecccCcCcccCC----ccccCCC-CCcEEEccCccCcCccCccccCC-----CCC
Q 005401 359 LDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIP----QSLGKCR-SLRRVRLRHNLLSGSVPEMFWGL-----PHM 428 (698)
Q Consensus 359 L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L 428 (698)
++++.|.+++.+|..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3445555555444444444445555555555554443 4555555 56666666666665555444443 667
Q ss_pred CEEEccCCccccccchhhh----cC-CCCCeeeccCccceeecCcccc----c-cCCceEEECCCCccccc----ccchh
Q 005401 429 YLFELADNSFTGKISKSIS----GA-NNLSSLLVSRNNFSGSIPDEVG----L-LSNLVEFSGDGNKFAGQ----IPGSL 494 (698)
Q Consensus 429 ~~L~l~~n~l~~~~~~~~~----~~-~~L~~L~l~~n~l~~~~~~~~~----~-l~~L~~L~l~~n~l~~~----~~~~~ 494 (698)
++|++++|.+++..+..+. .+ ++|++|++++|++++..+..+. . +++|++|++++|.+.+. ++..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 7777777776655554433 33 6788888888887655444332 3 36888999999888753 34445
Q ss_pred ccCC-CCCeEEcccCccccccchhhh----cc-CCCCEEeCCCCcCccc----CCcccCC-CCCCCEEeCCCCcCcccCc
Q 005401 495 AKLS-QLGNLDLSENELSGGIPEGIE----SW-KNINELNLANNRLSGE----IPSEIGN-LPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 495 ~~l~-~L~~L~Ls~n~l~~~~~~~~~----~l-~~L~~L~Ls~N~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~p 563 (698)
..++ +|++|+|++|++++..+..+. .+ ++|++|+|++|.+++. ++..+.. .++|++|||++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 6665 999999999999987776554 34 6999999999999863 4555655 4599999999999998666
Q ss_pred ccc----cccc-cCeEEcccCcCcccCC
Q 005401 564 LEL----QNLR-LNVLNLSNNRLSGELP 586 (698)
Q Consensus 564 ~~~----~~~~-L~~L~ls~N~l~~~~~ 586 (698)
..+ ..++ |++|++++|++....+
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~ 270 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSK 270 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCH
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCH
Confidence 443 3445 9999999999665444
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.2e-24 Score=227.70 Aligned_cols=227 Identities=19% Similarity=0.246 Sum_probs=154.6
Q ss_pred CCccccCCCCCCEEEcccCccceecC----cccCCCCCCCEEecccCcC---cccCCccccCCCCCcEEEccCccCcCcc
Q 005401 346 LPSELGKYSPLTTLDLSYNQFSGEIP----EGLCEKGSLEDLVLIYNSF---SGKIPQSLGKCRSLRRVRLRHNLLSGSV 418 (698)
Q Consensus 346 ~~~~l~~~~~L~~L~ls~n~l~~~~~----~~~~~~~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 418 (698)
++..+..+++|++|++++|.++...+ ..+..+++|++|++++|.+ .+.+|..+. .+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~-----------------~l 86 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR-----------------LL 86 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH-----------------HH
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH-----------------HH
Confidence 33445555666666666666554322 2234445555555554322 222222220 00
Q ss_pred CccccCCCCCCEEEccCCcccc----ccchhhhcCCCCCeeeccCccceeecCcc----cccc---------CCceEEEC
Q 005401 419 PEMFWGLPHMYLFELADNSFTG----KISKSISGANNLSSLLVSRNNFSGSIPDE----VGLL---------SNLVEFSG 481 (698)
Q Consensus 419 ~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l---------~~L~~L~l 481 (698)
...+..+++|++|++++|.+.. .++..+..+++|++|++++|.+++..+.. +..+ ++|++|++
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 0123556666666666666665 35556677778888888888775433333 3333 89999999
Q ss_pred CCCccc-cccc---chhccCCCCCeEEcccCcccc-----ccchhhhccCCCCEEeCCCCcCc----ccCCcccCCCCCC
Q 005401 482 DGNKFA-GQIP---GSLAKLSQLGNLDLSENELSG-----GIPEGIESWKNINELNLANNRLS----GEIPSEIGNLPVL 548 (698)
Q Consensus 482 ~~n~l~-~~~~---~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L 548 (698)
++|++. ...+ ..+..+++|++|+|++|.++. ..+..+..+++|++|+|++|.++ ..+|..+..+++|
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 999997 3444 467789999999999999983 34447889999999999999996 5788899999999
Q ss_pred CEEeCCCCcCccc----Ccccccc--cc-cCeEEcccCcCcc----cCChhh
Q 005401 549 NYLDLSGNLFSGK----IPLELQN--LR-LNVLNLSNNRLSG----ELPPLY 589 (698)
Q Consensus 549 ~~L~Ls~N~l~~~----~p~~~~~--~~-L~~L~ls~N~l~~----~~~~~~ 589 (698)
++|+|++|.+++. +|..+.. .+ |++|++++|+++. .+|...
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 9999999999876 5565533 55 9999999999998 466544
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=8.2e-24 Score=217.09 Aligned_cols=249 Identities=18% Similarity=0.247 Sum_probs=179.9
Q ss_pred CCEEEccCCcCCcCCCccccCC--CCCCEEEcccCccceecCcccCCCCCCCEEecccCcCccc-CCccccCCCCCcEEE
Q 005401 332 LSELKLFNNKLRGGLPSELGKY--SPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGK-IPQSLGKCRSLRRVR 408 (698)
Q Consensus 332 L~~L~l~~n~l~~~~~~~l~~~--~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 408 (698)
++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 556666666554 3344444 5667777777766655444 44567777777777776654 566677777888888
Q ss_pred ccCccCcCccCccccCCCCCCEEEccCC-ccccc-cchhhhcCCCCCeeeccCc-cceee-cCccccccC-CceEEECCC
Q 005401 409 LRHNLLSGSVPEMFWGLPHMYLFELADN-SFTGK-ISKSISGANNLSSLLVSRN-NFSGS-IPDEVGLLS-NLVEFSGDG 483 (698)
Q Consensus 409 l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~ 483 (698)
+++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 8887777767777777888888888887 56643 5566777888888888888 77653 456677788 888888888
Q ss_pred C--ccc-ccccchhccCCCCCeEEcccCc-cccccchhhhccCCCCEEeCCCCc-CcccCCcccCCCCCCCEEeCCCCcC
Q 005401 484 N--KFA-GQIPGSLAKLSQLGNLDLSENE-LSGGIPEGIESWKNINELNLANNR-LSGEIPSEIGNLPVLNYLDLSGNLF 558 (698)
Q Consensus 484 n--~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l 558 (698)
| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|+|++|. +.......+..+++|++|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 8 444 4566777889999999999998 777777888899999999999995 33222236788999999999999 3
Q ss_pred cccCccccccc-c-cCeEEcccCcCcccCChh
Q 005401 559 SGKIPLELQNL-R-LNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 559 ~~~~p~~~~~~-~-L~~L~ls~N~l~~~~~~~ 588 (698)
+ ...+..+ . ++.|++++|++++..|..
T Consensus 284 ~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 284 P---DGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp C---TTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred C---HHHHHHHHhhCcceEEecccCccccCCc
Confidence 3 2234444 2 788889999999887743
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=9.5e-23 Score=197.82 Aligned_cols=196 Identities=13% Similarity=0.146 Sum_probs=114.0
Q ss_pred CCCEEEcccCccceecCcccCCCCCCCEEecccCc-CcccCCccccCCCCCcEEEccC-ccCcCccCccccCCCCCCEEE
Q 005401 355 PLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNS-FSGKIPQSLGKCRSLRRVRLRH-NLLSGSVPEMFWGLPHMYLFE 432 (698)
Q Consensus 355 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 432 (698)
++++|++++|++++..+..|..+++|++|++++|. +....+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777776666667777777777777775 6666556677777777777776 777766666666677777777
Q ss_pred ccCCccccccchhhhcCCCCC---eeeccCc-cceeecCccccccCCce-EEECCCCcccccccchhccCCCCCeEEccc
Q 005401 433 LADNSFTGKISKSISGANNLS---SLLVSRN-NFSGSIPDEVGLLSNLV-EFSGDGNKFAGQIPGSLAKLSQLGNLDLSE 507 (698)
Q Consensus 433 l~~n~l~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 507 (698)
+++|++++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|.++...+..+.. ++|++|+|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 77666665 233 55555555 6666666 55544444455555555 5555555555322223333 4555555555
Q ss_pred Cc-cccccchhhhcc-CCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCC
Q 005401 508 NE-LSGGIPEGIESW-KNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGN 556 (698)
Q Consensus 508 n~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 556 (698)
|+ +++..+..|.++ ++|++|+|++|++++ +|.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 53 544444444555 555555555555542 2222 3344445554443
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.9e-22 Score=194.37 Aligned_cols=196 Identities=15% Similarity=0.156 Sum_probs=103.4
Q ss_pred CCCEEecccCcCcccCCccccCCCCCcEEEccCcc-CcCccCccccCCCCCCEEEccC-CccccccchhhhcCCCCCeee
Q 005401 379 SLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNL-LSGSVPEMFWGLPHMYLFELAD-NSFTGKISKSISGANNLSSLL 456 (698)
Q Consensus 379 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~ 456 (698)
++++|++++|++.+..+..|.++++|++|++++|. ++.+.+..|.++++|++|++++ |.++...+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555555555555555555555555554 5544444555555555555555 555555555555555555555
Q ss_pred ccCccceeecCccccccCCce---EEECCCC-cccccccchhccCCCCC-eEEcccCccccccchhhhccCCCCEEeCCC
Q 005401 457 VSRNNFSGSIPDEVGLLSNLV---EFSGDGN-KFAGQIPGSLAKLSQLG-NLDLSENELSGGIPEGIESWKNINELNLAN 531 (698)
Q Consensus 457 l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 531 (698)
+++|++++ +|. +..+++|+ .|++++| .+.+..+..|..+++|+ +|++++|.++...+..+.. ++|++|+|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 55555553 333 44455554 5555555 55544444555555555 5555555555332223333 5555555555
Q ss_pred Cc-CcccCCcccCCC-CCCCEEeCCCCcCcccCcccccccccCeEEcccC
Q 005401 532 NR-LSGEIPSEIGNL-PVLNYLDLSGNLFSGKIPLELQNLRLNVLNLSNN 579 (698)
Q Consensus 532 N~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N 579 (698)
|+ +++..+..|.++ ++|++||+++|++++..+..+.. |+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~--L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH--LKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTT--CSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChhHhcc--CceeeccCc
Confidence 53 554444555555 55555555555555433332211 555555544
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.1e-23 Score=216.27 Aligned_cols=253 Identities=17% Similarity=0.167 Sum_probs=188.3
Q ss_pred ccEEEccCccccccCChhccCC--CCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCcccee-cCcccCCCCCCCEEe
Q 005401 308 LESLNLYENRLEGTLPESIARS--KNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGE-IPEGLCEKGSLEDLV 384 (698)
Q Consensus 308 L~~L~l~~n~l~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~ 384 (698)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 566777776665 2344444 6788888888888766554 45678888888888887755 666777888888888
Q ss_pred cccCcCcccCCccccCCCCCcEEEccCc-cCcCc-cCccccCCCCCCEEEccCC-ccccc-cchhhhcCC-CCCeeeccC
Q 005401 385 LIYNSFSGKIPQSLGKCRSLRRVRLRHN-LLSGS-VPEMFWGLPHMYLFELADN-SFTGK-ISKSISGAN-NLSSLLVSR 459 (698)
Q Consensus 385 L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~l~~ 459 (698)
+++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 8888887777777888888888888888 56653 5566778888888888888 77754 566677888 899999988
Q ss_pred c--cce-eecCccccccCCceEEECCCCc-ccccccchhccCCCCCeEEcccCc-cccccchhhhccCCCCEEeCCCCcC
Q 005401 460 N--NFS-GSIPDEVGLLSNLVEFSGDGNK-FAGQIPGSLAKLSQLGNLDLSENE-LSGGIPEGIESWKNINELNLANNRL 534 (698)
Q Consensus 460 n--~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l 534 (698)
| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 8 444 3456667788899999999998 666777788888999999999985 33222235788899999999988 4
Q ss_pred cccCCcccCCC-CCCCEEeCCCCcCcccCcccccc
Q 005401 535 SGEIPSEIGNL-PVLNYLDLSGNLFSGKIPLELQN 568 (698)
Q Consensus 535 ~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~ 568 (698)
.. ..+..+ ..++.|++++|.+++..|..+..
T Consensus 284 ~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 284 PD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 32 233333 23677778999999888876654
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=6.5e-23 Score=207.28 Aligned_cols=199 Identities=20% Similarity=0.236 Sum_probs=85.3
Q ss_pred CCCEEEcccCccceecCccc--CCCCCCCEEecccCcCcccCC----ccccCCCCCcEEEccCccCcCccCccccCCCCC
Q 005401 355 PLTTLDLSYNQFSGEIPEGL--CEKGSLEDLVLIYNSFSGKIP----QSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHM 428 (698)
Q Consensus 355 ~L~~L~ls~n~l~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 428 (698)
+|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..|..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34444444444444444444 444445555555554443322 122345555555555555555555555555555
Q ss_pred CEEEccCCccccc--c--chhhhcCCCCCeeeccCccceeecCc----cccccCCceEEECCCCcccccccchhccC---
Q 005401 429 YLFELADNSFTGK--I--SKSISGANNLSSLLVSRNNFSGSIPD----EVGLLSNLVEFSGDGNKFAGQIPGSLAKL--- 497 (698)
Q Consensus 429 ~~L~l~~n~l~~~--~--~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--- 497 (698)
++|++++|++.+. . +..+..+++|++|++++|+++. ++. .+..+++|++|++++|.+.+..|..+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 5555555554321 1 1112344455555555555431 111 12233333333333333333333333322
Q ss_pred CCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCc
Q 005401 498 SQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 498 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 559 (698)
++|++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|+++
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 34444444444444 2233322 3444444444444421 21 334444444444444443
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=205.57 Aligned_cols=225 Identities=18% Similarity=0.183 Sum_probs=175.4
Q ss_pred cccEEEccCccccccCC---hhccCCCCCCEEEccCCcCCcCCCccc--cCCCCCCEEEcccCccceecC----cccCCC
Q 005401 307 QLESLNLYENRLEGTLP---ESIARSKNLSELKLFNNKLRGGLPSEL--GKYSPLTTLDLSYNQFSGEIP----EGLCEK 377 (698)
Q Consensus 307 ~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~l--~~~~~L~~L~ls~n~l~~~~~----~~~~~~ 377 (698)
.++.+.+.++.+..... ..+..+++|++|++++|++++..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 45566666655542100 012234668899999998888888777 788889999999998886544 344578
Q ss_pred CCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCc---c-CccccCCCCCCEEEccCCccccccc--h-hhhcCC
Q 005401 378 GSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGS---V-PEMFWGLPHMYLFELADNSFTGKIS--K-SISGAN 450 (698)
Q Consensus 378 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~-~~~~~~l~~L~~L~l~~n~l~~~~~--~-~~~~~~ 450 (698)
++|++|++++|.+.+..+..|..+++|++|++++|++.+. . +..+..+++|++|++++|+++.... . .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 8999999999999888888899999999999999987652 2 2334688999999999999974322 2 357889
Q ss_pred CCCeeeccCccceeecCcccccc---CCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEE
Q 005401 451 NLSSLLVSRNNFSGSIPDEVGLL---SNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINEL 527 (698)
Q Consensus 451 ~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 527 (698)
+|++|++++|++.+..|..+..+ ++|++|++++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|++|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 299 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL 299 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence 99999999999998878777666 69999999999999 5676664 7999999999999965 33 6888999999
Q ss_pred eCCCCcCcc
Q 005401 528 NLANNRLSG 536 (698)
Q Consensus 528 ~Ls~N~l~~ 536 (698)
+|++|++++
T Consensus 300 ~L~~N~l~~ 308 (310)
T 4glp_A 300 TLDGNPFLV 308 (310)
T ss_dssp ECSSTTTSC
T ss_pred ECcCCCCCC
Confidence 999999974
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=3.6e-22 Score=201.21 Aligned_cols=193 Identities=23% Similarity=0.319 Sum_probs=103.9
Q ss_pred CCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEE
Q 005401 328 RSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRV 407 (698)
Q Consensus 328 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 407 (698)
.+++|++|++++|.++.. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 445666666666666532 2 35555666666666665553322 55555555555555555432 234445555555
Q ss_pred EccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCccc
Q 005401 408 RLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFA 487 (698)
Q Consensus 408 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 487 (698)
++++|.+++.. .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.
T Consensus 113 ~l~~n~l~~~~--------------------------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 113 DLTSTQITDVT--------------------------PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp ECTTSCCCCCG--------------------------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCch--------------------------hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 55555444321 14444445555555554443222 445555555555555555
Q ss_pred ccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcc
Q 005401 488 GQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 488 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 560 (698)
+..+ +..+++|++|++++|.+++..+ +..+++|++|+|++|++++.. .+..+++|++|++++|++++
T Consensus 165 ~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 165 DLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 3322 5566666666666666664432 566666666666666666433 25666666666666666654
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.2e-21 Score=195.39 Aligned_cols=191 Identities=23% Similarity=0.340 Sum_probs=150.6
Q ss_pred CCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeee
Q 005401 377 KGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLL 456 (698)
Q Consensus 377 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 456 (698)
+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 3445555555555543 22 35566677777777777665444 66777777777777777654 3577888999999
Q ss_pred ccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcc
Q 005401 457 VSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSG 536 (698)
Q Consensus 457 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 536 (698)
+++|++++. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|+|++|++++
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 999999853 3 38899999999999999986654 8899999999999999996544 8999999999999999996
Q ss_pred cCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcc
Q 005401 537 EIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSG 583 (698)
Q Consensus 537 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~ 583 (698)
..+ +..+++|++|++++|++++..| +..++ |+.|++++|++++
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 443 8899999999999999997664 67776 9999999999976
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=1.7e-21 Score=200.35 Aligned_cols=204 Identities=15% Similarity=0.149 Sum_probs=111.9
Q ss_pred ccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecC-cccCCCCCCCE
Q 005401 304 CELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIP-EGLCEKGSLED 382 (698)
Q Consensus 304 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~ 382 (698)
|.+.-++++.++++++ .+|..+ .+++++|++++|+|+.+.+.+|.++++|++|++++|++.+.+| ..|.+++++.+
T Consensus 7 C~C~~~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp SEEETTEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred cEeeCCEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 3334456666667666 455544 2567777777777776655667777777777777777655444 34566666554
Q ss_pred -EecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccC-CccccccchhhhcCC-CCCeeeccC
Q 005401 383 -LVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELAD-NSFTGKISKSISGAN-NLSSLLVSR 459 (698)
Q Consensus 383 -L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~-~L~~L~l~~ 459 (698)
+.+..|++....|..|..+++|++|++++|+++...+..+....++..+++.+ +.+....+..|..+. .++.|++++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 44455666666666677777777777777776655555555555555555543 344443333444332 344555555
Q ss_pred ccceeecCccccccCCceEEECCC-CcccccccchhccCCCCCeEEcccCccc
Q 005401 460 NNFSGSIPDEVGLLSNLVEFSGDG-NKFAGQIPGSLAKLSQLGNLDLSENELS 511 (698)
Q Consensus 460 n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 511 (698)
|+++. +|.......+|+++++.+ |.+....+.+|..+++|++|||++|+++
T Consensus 164 N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 164 NGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred ccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 55542 222222233444444443 2232222233444444444444444444
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.8e-21 Score=184.32 Aligned_cols=186 Identities=24% Similarity=0.293 Sum_probs=140.5
Q ss_pred CCCcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCc
Q 005401 52 TPCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIP 131 (698)
Q Consensus 52 ~~C~w~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 131 (698)
+.|.|.++.|.. ++++.. |..+ .++|++|++++|.+++..+..|.++++|++|++++|++.+..+
T Consensus 5 C~C~~~~v~c~~------------~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (208)
T 2o6s_A 5 CSCSGTTVECYS------------QGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN 69 (208)
T ss_dssp CEEETTEEECCS------------SCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CEECCCEEEecC------------CCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh
Confidence 457898888864 222222 2222 3578888888888887777778888888888888888887777
Q ss_pred cccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCC
Q 005401 132 ATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLT 211 (698)
Q Consensus 132 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~ 211 (698)
..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.++ ...+..+..++
T Consensus 70 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~ 148 (208)
T 2o6s_A 70 GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLT 148 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCT
T ss_pred hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCC
Confidence 77788888888888888888766666788888888888888888777777888888888888888877 33344577788
Q ss_pred CCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCC
Q 005401 212 NLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKS 260 (698)
Q Consensus 212 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 260 (698)
+|++|++++|.+.+ .+++|+.|+++.|++++.+|..++.++.
T Consensus 149 ~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 149 SLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 88888888886653 4567888888888888888887776654
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=1.5e-20 Score=179.07 Aligned_cols=162 Identities=15% Similarity=0.195 Sum_probs=135.5
Q ss_pred EEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCc
Q 005401 430 LFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENE 509 (698)
Q Consensus 430 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 509 (698)
.++++++.++.. |..+. ++++.|++++|++++..+..+..+++|+.|++++|.+.+..|..|..+++|++|+|++|.
T Consensus 15 ~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 444555554432 22222 567888888888887777778888888888888888888888889999999999999999
Q ss_pred cccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChh
Q 005401 510 LSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 510 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~ 588 (698)
++...+..|.++++|++|+|++|++++..|..|..+++|++|+|++|.+++..+..+..++ |+.|++++|+|.|.|+..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 9977777789999999999999999988899999999999999999999998888888887 999999999999999988
Q ss_pred hhhhcC
Q 005401 589 YAKEMY 594 (698)
Q Consensus 589 ~~~~~~ 594 (698)
|+..|.
T Consensus 172 ~l~~~l 177 (220)
T 2v9t_B 172 WLADYL 177 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=178.33 Aligned_cols=162 Identities=18% Similarity=0.194 Sum_probs=134.0
Q ss_pred EEEccCCccccccchhhhcCCCCCeeeccCccceeecC-ccccccCCceEEECCCCcccccccchhccCCCCCeEEcccC
Q 005401 430 LFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIP-DEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSEN 508 (698)
Q Consensus 430 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 508 (698)
.+++++|.++.. |..+ .+.+++|++++|++++..+ ..+..+++|+.|++++|.+++..+..|..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 445555554432 2222 1345677788887776644 45778888888888888888777788999999999999999
Q ss_pred ccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCCh
Q 005401 509 ELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPP 587 (698)
Q Consensus 509 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~ 587 (698)
.+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..++ |+.|++++|+|.|.|+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 99988888899999999999999999988899999999999999999999999899999887 99999999999999998
Q ss_pred hhhhhcC
Q 005401 588 LYAKEMY 594 (698)
Q Consensus 588 ~~~~~~~ 594 (698)
.|+..|.
T Consensus 172 ~~l~~~~ 178 (220)
T 2v70_A 172 AWLGEWL 178 (220)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776654
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=6.3e-20 Score=188.62 Aligned_cols=242 Identities=17% Similarity=0.110 Sum_probs=191.0
Q ss_pred CEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCC-ccccCCCCCcE-EEcc
Q 005401 333 SELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIP-QSLGKCRSLRR-VRLR 410 (698)
Q Consensus 333 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~l~ 410 (698)
++++.++++++ .+|..+ .+++++|++++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.++++++. +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57888899998 456655 3689999999999997777789999999999999999866554 67899998876 5667
Q ss_pred CccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccC-ccceeecCccccccC-CceEEECCCCcccc
Q 005401 411 HNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSR-NNFSGSIPDEVGLLS-NLVEFSGDGNKFAG 488 (698)
Q Consensus 411 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~ 488 (698)
.|+++.+.+..|..+++|++|++++|++....+..+....++..+++.+ +++....+..+..+. .++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 7999999899999999999999999999988877777788889999976 567655566666654 69999999999986
Q ss_pred cccchhccCCCCCeEEccc-CccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCccccc
Q 005401 489 QIPGSLAKLSQLGNLDLSE-NELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQ 567 (698)
Q Consensus 489 ~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 567 (698)
..+..| ...+|++|++++ |.++.+.++.|.++++|++|+|++|+|+...+..|. +|+.|.+.++.--..+|. +.
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~-l~ 243 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT-LE 243 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC-TT
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC-ch
Confidence 555544 467899999985 667755556789999999999999999954444454 555665555443345663 66
Q ss_pred ccc-cCeEEcccCcCcc
Q 005401 568 NLR-LNVLNLSNNRLSG 583 (698)
Q Consensus 568 ~~~-L~~L~ls~N~l~~ 583 (698)
.+. |+.+++++ +..|
T Consensus 244 ~l~~L~~l~l~~-~~~c 259 (350)
T 4ay9_X 244 KLVALMEASLTY-PSHC 259 (350)
T ss_dssp TCCSCCEEECSC-HHHH
T ss_pred hCcChhhCcCCC-Cccc
Confidence 666 99999974 4444
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=3.3e-20 Score=200.17 Aligned_cols=198 Identities=26% Similarity=0.294 Sum_probs=142.8
Q ss_pred ccccc-ccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccc
Q 005401 55 HWRGV-SCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPAT 133 (698)
Q Consensus 55 ~w~g~-~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 133 (698)
.|.++ .|.. .+++.|++++|.+++ +|..+ +++|++|+|++|.++. +| ..+++|++|++++|.+++ +|.
T Consensus 49 ~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 49 AVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp HHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred hhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-
Confidence 68888 6753 478899999999987 44444 3789999999998874 45 457889999999998886 555
Q ss_pred cCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCC
Q 005401 134 LSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNL 213 (698)
Q Consensus 134 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L 213 (698)
+.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.++ .+|. +. ++|
T Consensus 118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~--~lp~-l~--~~L 182 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT--FLPE-LP--ESL 182 (571)
T ss_dssp CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--CCCC-CC--TTC
T ss_pred hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC--Ccch-hh--CCC
Confidence 554 88899999988886 554 57888888888888886 333 5678888888888877 3666 54 788
Q ss_pred CEEEcccCCCCCcCCccccCCCCC-------CEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCccccccc
Q 005401 214 EYLWLSGCNLLGEIPESLTRLTKL-------KNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMT 283 (698)
Q Consensus 214 ~~L~l~~n~l~~~~~~~l~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 283 (698)
++|++++|+++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|..+..++
T Consensus 183 ~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 183 EALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 88888888877 3444 443 55 77777777776 4566666677777777777777666665554433
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=3.2e-20 Score=191.61 Aligned_cols=182 Identities=24% Similarity=0.206 Sum_probs=136.4
Q ss_pred cEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhh-cCCCCCeeeccCccceeecCccccccCCceEEECCC
Q 005401 405 RRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSIS-GANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDG 483 (698)
Q Consensus 405 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 483 (698)
+.++++++.++. +|..+ .+.++.|++++|++++..+..+. .+++|+.|+|++|++++..+..+..+++|+.|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 345555555553 23222 13456666666666666555565 667777777777777766666777778888888888
Q ss_pred CcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCccc---CCCCCCCEEeCCCCcCcc
Q 005401 484 NKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEI---GNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 484 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~ 560 (698)
|++....+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..| ..+++|+.|||++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 88877777778888899999999999988888889999999999999999985444445 578999999999999998
Q ss_pred cCcccccccc---cCeEEcccCcCcccCChhh
Q 005401 561 KIPLELQNLR---LNVLNLSNNRLSGELPPLY 589 (698)
Q Consensus 561 ~~p~~~~~~~---L~~L~ls~N~l~~~~~~~~ 589 (698)
..+..+..+. ++.|++++|+|.|.|...|
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~ 209 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQ 209 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEECCHHHHH
T ss_pred cCHHHhhhccHhhcceEEecCCCccCCcCcHH
Confidence 7777777765 5889999999999998653
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=4.8e-20 Score=174.55 Aligned_cols=139 Identities=20% Similarity=0.190 Sum_probs=65.0
Q ss_pred cCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCe
Q 005401 423 WGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGN 502 (698)
Q Consensus 423 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 502 (698)
..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 128 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128 (208)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence 33333333333333333333333333444444444444444333333444444444444444444444444455555555
Q ss_pred EEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccc
Q 005401 503 LDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQN 568 (698)
Q Consensus 503 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 568 (698)
|++++|.+++..+..+..+++|++|+|++|.+.+ .+++|++|+++.|.++|.+|..+..
T Consensus 129 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred EECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcc
Confidence 5555555554444445555555555555555442 2344555555555555555555444
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.4e-19 Score=195.31 Aligned_cols=187 Identities=28% Similarity=0.373 Sum_probs=108.0
Q ss_pred CCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEcc
Q 005401 331 NLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLR 410 (698)
Q Consensus 331 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 410 (698)
+++.|++++|++++ +|..+ .++|++|++++|.++ .+| ..+++|+.|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 66777777777665 34333 255666666666665 344 234555555555555554 333 332 55555555
Q ss_pred CccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccc
Q 005401 411 HNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQI 490 (698)
Q Consensus 411 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 490 (698)
+|.+++ +|. . +++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +
T Consensus 129 ~N~l~~-lp~---~------------------------l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 129 NNQLTM-LPE---L------------------------PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp SSCCSC-CCC---C------------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCC-CCC---c------------------------CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c
Confidence 555554 222 3 4455555555555543 333 34556666666666654 4
Q ss_pred cchhccCCCCCeEEcccCccccccchhhhccCCC-------CEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCc
Q 005401 491 PGSLAKLSQLGNLDLSENELSGGIPEGIESWKNI-------NELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 491 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
|. +. ++|++|+|++|.++ .+|. +.. +| ++|+|++|+|+ .+|..+..+++|+.|+|++|.+++.+|
T Consensus 176 p~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 176 PE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 44 43 66677777777666 4444 433 55 77777777777 567766677777777777777777777
Q ss_pred cccccc
Q 005401 564 LELQNL 569 (698)
Q Consensus 564 ~~~~~~ 569 (698)
..+..+
T Consensus 248 ~~l~~l 253 (571)
T 3cvr_A 248 ESLSQQ 253 (571)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 766654
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=2.3e-19 Score=172.21 Aligned_cols=160 Identities=23% Similarity=0.256 Sum_probs=126.9
Q ss_pred EEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCc
Q 005401 430 LFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENE 509 (698)
Q Consensus 430 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 509 (698)
.++.+++.++.. |..+ .++|++|++++|.+++..|..+..+++|++|++++|.+....+..|..+++|++|+|++|+
T Consensus 23 ~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 445555444422 2222 2567777777777777767777778888888888888876666778889999999999999
Q ss_pred cccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCCh-
Q 005401 510 LSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPP- 587 (698)
Q Consensus 510 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~- 587 (698)
+++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..++ |+.|++++|++.|.|+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 178 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI 178 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence 99877778899999999999999999 7888899999999999999999988877788887 99999999999999983
Q ss_pred hhhhhc
Q 005401 588 LYAKEM 593 (698)
Q Consensus 588 ~~~~~~ 593 (698)
.+...|
T Consensus 179 ~~l~~~ 184 (229)
T 3e6j_A 179 MYLRNW 184 (229)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344433
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=5e-19 Score=169.82 Aligned_cols=158 Identities=24% Similarity=0.281 Sum_probs=131.5
Q ss_pred CCCcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCc
Q 005401 52 TPCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIP 131 (698)
Q Consensus 52 ~~C~w~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 131 (698)
+.|.|+++.|.. +.++ .+|..+ .++|++|+|++|.+++..+..|.++++|++|+|++|.+....+
T Consensus 17 ~~Cs~~~v~c~~------------~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 81 (229)
T 3e6j_A 17 CSCSGTTVDCRS------------KRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV 81 (229)
T ss_dssp CEEETTEEECTT------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CEEeCCEeEccC------------CCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh
Confidence 689999998864 2233 223322 2789999999999999888899999999999999999987777
Q ss_pred cccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCC
Q 005401 132 ATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLT 211 (698)
Q Consensus 132 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~ 211 (698)
..|..+++|++|+|++|++++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.++ ...+..+..++
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~ 159 (229)
T 3e6j_A 82 GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLS 159 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCT
T ss_pred hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCC
Confidence 88899999999999999999877777899999999999999998 56777889999999999999988 33345688899
Q ss_pred CCCEEEcccCCCCCc
Q 005401 212 NLEYLWLSGCNLLGE 226 (698)
Q Consensus 212 ~L~~L~l~~n~l~~~ 226 (698)
+|++|++++|.+...
T Consensus 160 ~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 160 SLTHAYLFGNPWDCE 174 (229)
T ss_dssp TCCEEECTTSCBCTT
T ss_pred CCCEEEeeCCCccCC
Confidence 999999999988754
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=165.79 Aligned_cols=156 Identities=19% Similarity=0.171 Sum_probs=125.7
Q ss_pred cEEEccCccCcCccCccccCCCCCCEEEccCCccccccc-hhhhcCCCCCeeeccCccceeecCccccccCCceEEECCC
Q 005401 405 RRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKIS-KSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDG 483 (698)
Q Consensus 405 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 483 (698)
+.+++++|.++. +|..+ .+.++.|++++|.+++..+ ..|..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 356666666553 23322 2345667777777766543 4467788888888888888877777888888888999999
Q ss_pred CcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCc
Q 005401 484 NKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 484 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|.+++..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 98888888889999999999999999998889999999999999999999998889999999999999999999987554
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.4e-18 Score=173.24 Aligned_cols=172 Identities=33% Similarity=0.409 Sum_probs=109.8
Q ss_pred cCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccE
Q 005401 87 CRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLES 166 (698)
Q Consensus 87 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 166 (698)
..+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. + .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCE
Confidence 3456666666666666544 2 35666666666666666665433 66666777777777666642 2 3666667777
Q ss_pred EEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCC
Q 005401 167 LSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNG 246 (698)
Q Consensus 167 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 246 (698)
|++++|.+++. ..+..+++|++|++++|.++ .+ ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~--~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKIT--DI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCC--CC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCC--cc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 77777766653 34666677777777777666 22 456667777777777777765543 6677777777777777
Q ss_pred CcccCCccccCCCCCceeeccCCccee
Q 005401 247 LTGSIPSSITEMKSIEQIELFKNSLSG 273 (698)
Q Consensus 247 l~~~~~~~~~~l~~L~~L~l~~n~~~~ 273 (698)
+++ ++ .+..+++|+.|++++|.+..
T Consensus 190 i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 764 23 36667777777777776653
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.6e-18 Score=165.14 Aligned_cols=154 Identities=21% Similarity=0.187 Sum_probs=119.3
Q ss_pred cEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCC
Q 005401 405 RRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGN 484 (698)
Q Consensus 405 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 484 (698)
+.++++++.++.+ |..+. ++++.|++++|.+++..+..|..+++|+.|++++|++++..|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3455555555532 32221 46666666666666666666777777777777777777777777778888888888888
Q ss_pred cccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCccc
Q 005401 485 KFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGK 561 (698)
Q Consensus 485 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 561 (698)
.++...+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+...
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 88766666788899999999999999988888999999999999999999987777899999999999999999864
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1e-18 Score=174.19 Aligned_cols=150 Identities=22% Similarity=0.309 Sum_probs=70.6
Q ss_pred cCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceE
Q 005401 399 GKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVE 478 (698)
Q Consensus 399 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 478 (698)
..+++|++|++++|.+++..+ +..+++|+.|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|+.
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~ 138 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLES 138 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCE
T ss_pred hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCE
Confidence 333444444444444433222 33444444444444444331 1244444444555554444421 23344444555
Q ss_pred EECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcC
Q 005401 479 FSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLF 558 (698)
Q Consensus 479 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 558 (698)
|++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|++|+|++|++++ ++ .+..+++|+.|++++|++
T Consensus 139 L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred EEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcc
Confidence 55555544433 234555555555555555554433 5555555555555555553 22 255555555555555555
Q ss_pred cc
Q 005401 559 SG 560 (698)
Q Consensus 559 ~~ 560 (698)
+.
T Consensus 213 ~~ 214 (291)
T 1h6t_A 213 LN 214 (291)
T ss_dssp EC
T ss_pred cC
Confidence 53
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1.9e-18 Score=188.72 Aligned_cols=174 Identities=32% Similarity=0.407 Sum_probs=121.1
Q ss_pred ccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCcc
Q 005401 86 FCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLE 165 (698)
Q Consensus 86 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 165 (698)
+..+++|++|++++|.+.... .+..+++|++|+|++|.+.+..+ +..+++|++|+|++|.+.+ ++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 455667777777777765542 46777777777777777775544 6777777777777777764 22 577777777
Q ss_pred EEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCC
Q 005401 166 SLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFN 245 (698)
Q Consensus 166 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 245 (698)
+|+|++|.+.+. ..+..+++|+.|+|++|.++ .+ ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~--~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT--DI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC--CC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccC--Cc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 777777777653 34677777777777777776 22 456777777777777777776555 677777777777777
Q ss_pred CCcccCCccccCCCCCceeeccCCcceec
Q 005401 246 GLTGSIPSSITEMKSIEQIELFKNSLSGE 274 (698)
Q Consensus 246 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 274 (698)
.+++. ..+..+++|+.|++++|.+.+.
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 77643 3467777777777777777643
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=9.1e-19 Score=180.66 Aligned_cols=157 Identities=24% Similarity=0.140 Sum_probs=93.7
Q ss_pred CcEEEccCccCcCccCcccc-CCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECC
Q 005401 404 LRRVRLRHNLLSGSVPEMFW-GLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGD 482 (698)
Q Consensus 404 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 482 (698)
++.|+|++|.+++..+..|. .+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44555555555544444444 55555555555555555555555555556666666666655555555666666666666
Q ss_pred CCcccccccchhccCCCCCeEEcccCccccccchhh---hccCCCCEEeCCCCcCcccCCcccCCCCC--CCEEeCCCCc
Q 005401 483 GNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGI---ESWKNINELNLANNRLSGEIPSEIGNLPV--LNYLDLSGNL 557 (698)
Q Consensus 483 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--L~~L~Ls~N~ 557 (698)
+|.+.+..+..|..+++|++|+|++|.+++..+..| ..+++|++|+|++|+|++..+..+..++. ++.|+|++|.
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 666666666666666777777777777765444444 45677777777777777544455666665 3677777777
Q ss_pred Ccc
Q 005401 558 FSG 560 (698)
Q Consensus 558 l~~ 560 (698)
+..
T Consensus 201 ~~C 203 (361)
T 2xot_A 201 LEC 203 (361)
T ss_dssp EEC
T ss_pred ccC
Confidence 765
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=1.1e-18 Score=162.44 Aligned_cols=153 Identities=24% Similarity=0.345 Sum_probs=125.2
Q ss_pred CeeeccCccceeecCccccccCCceEEECCCCcccccccc-hhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCC
Q 005401 453 SSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPG-SLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLAN 531 (698)
Q Consensus 453 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 531 (698)
+.+++++|.++ .+|..+. .+|++|++++|.+.+..+. .+..+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777775 5565443 3788888888888866664 488999999999999999988899999999999999999
Q ss_pred CcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhcCC-cccCCCCCCCCCC
Q 005401 532 NRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMYR-GSFLGNPGLCGDL 608 (698)
Q Consensus 532 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~~-~~~~~n~~~c~~~ 608 (698)
|++++..+..|.++++|++|+|++|++++..|..+..++ |++|++++|+|+|.|+..|+..|.. ..+.++...|..|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 999988888899999999999999999999999998887 9999999999999999876655432 2334455556543
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=3.3e-18 Score=186.86 Aligned_cols=189 Identities=19% Similarity=0.245 Sum_probs=125.0
Q ss_pred CCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccC
Q 005401 332 LSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRH 411 (698)
Q Consensus 332 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 411 (698)
+..+.+..+.+.+..+ +..++.|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4445566666654432 45677788888888887643 3 46777888888888888776544 77778888888888
Q ss_pred ccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCccccccc
Q 005401 412 NLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIP 491 (698)
Q Consensus 412 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 491 (698)
|.+++. ..+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..|
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 877753 2566777777777777777653 3466677777777777776643 455666666666666666665544
Q ss_pred chhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcc
Q 005401 492 GSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSG 536 (698)
Q Consensus 492 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 536 (698)
+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 56666666666666666643 245666666666666666654
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=1.6e-18 Score=176.47 Aligned_cols=217 Identities=14% Similarity=0.057 Sum_probs=94.6
Q ss_pred CCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCcc----eeccCccccccccc
Q 005401 210 LTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSL----SGELPVKWVNMTTL 285 (698)
Q Consensus 210 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~----~~~~~~~~~~~~~L 285 (698)
+++|+.|++.+ .++.+...+|..+++|+.++++.|.+....+.+|..+.++..+....+.. .......|..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 56666666655 55555555566666666666666665555555555555555544433211 11112223333333
Q ss_pred c-eeccCCCccccccCccc-----ccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEE
Q 005401 286 L-RFDASMNQLTGTIPNEL-----CELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTL 359 (698)
Q Consensus 286 ~-~L~l~~n~l~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 359 (698)
+ .+.+.... .++..+ ...++..+.+.++-...........+++|+.+++++|+++.+.+.+|.++.+|+++
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 3 22221110 000000 00023333333221110000111124555555555555554444455555555555
Q ss_pred EcccCccceecCcccCCCCCCC-EEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEE
Q 005401 360 DLSYNQFSGEIPEGLCEKGSLE-DLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFE 432 (698)
Q Consensus 360 ~ls~n~l~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 432 (698)
++.+| ++.+.+.+|.++.+|+ .+++.+ .+..+.+.+|.+|++|+.++++.|.++.+.+.+|.++++|+.++
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 55554 4444444455555555 555544 44434444455555555555544444444444444444444443
No 115
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=155.27 Aligned_cols=140 Identities=24% Similarity=0.317 Sum_probs=121.8
Q ss_pred CeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCC
Q 005401 453 SSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANN 532 (698)
Q Consensus 453 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 532 (698)
+.+++++|.++ .+|..+ .++|++|++++|.++ .+|..|..+++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46777777776 455543 367889999999887 66788999999999999999999888889999999999999999
Q ss_pred cCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhcCCc
Q 005401 533 RLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMYRG 596 (698)
Q Consensus 533 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~~~ 596 (698)
++++..|..|.++++|++|+|++|.++...+..|..++ |+.|++++|+|.|.|+..|+..|...
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~ 153 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS 153 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHh
Confidence 99988888999999999999999999988887888887 99999999999999998888776544
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=4.2e-18 Score=173.44 Aligned_cols=219 Identities=11% Similarity=0.027 Sum_probs=127.5
Q ss_pred CCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCc----CcccCCccccCCCCC
Q 005401 329 SKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNS----FSGKIPQSLGKCRSL 404 (698)
Q Consensus 329 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~----l~~~~~~~~~~l~~L 404 (698)
+++|++|++.+ .++.+.+.+|.++++|+++++++|.+....+.+|..+.++..+.+..+. ........|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78888888887 7777777778888888888888887776777777777666666655422 122233455566666
Q ss_pred c-EEEccCccCcCccCccc---cCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEE
Q 005401 405 R-RVRLRHNLLSGSVPEMF---WGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFS 480 (698)
Q Consensus 405 ~-~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 480 (698)
+ .+.+....- .....+ ....+++.+.+.++-...........+++|+.+++++|+++...+.+|..|.+|++++
T Consensus 179 ~~~i~~~~~~~--l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 179 ETTIQVGAMGK--LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp EEEEEECTTCC--HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ceeEEecCCCc--HHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 5 444432211 000111 1223444444443321111111112356667777766666655555666666666666
Q ss_pred CCCCcccccccchhccCCCCC-eEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEe
Q 005401 481 GDGNKFAGQIPGSLAKLSQLG-NLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLD 552 (698)
Q Consensus 481 l~~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 552 (698)
+.+| +....+.+|.+|++|+ .+++.+ .++.+.+..|.++++|++|++++|.++...+.+|.++++|+.++
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6665 5555556666666666 666666 55555556666666666666666666655555666666666654
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.1e-17 Score=156.48 Aligned_cols=153 Identities=17% Similarity=0.203 Sum_probs=95.0
Q ss_pred cCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceE
Q 005401 399 GKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVE 478 (698)
Q Consensus 399 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 478 (698)
..+++|+.|++++|.++. ++ .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 445566666666666663 23 45566666666666664432 234566667777777777766555666666667777
Q ss_pred EECCCCcccccccchhccCCCCCeEEcccCc-cccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCc
Q 005401 479 FSGDGNKFAGQIPGSLAKLSQLGNLDLSENE-LSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNL 557 (698)
Q Consensus 479 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 557 (698)
|++++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|++++ ++ .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 7777776666666666667777777777776 44 333 46666777777777777764 33 56666677777777766
Q ss_pred Cc
Q 005401 558 FS 559 (698)
Q Consensus 558 l~ 559 (698)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 64
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=6.7e-18 Score=165.48 Aligned_cols=167 Identities=26% Similarity=0.290 Sum_probs=116.4
Q ss_pred EEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCC
Q 005401 68 VTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQE 147 (698)
Q Consensus 68 v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 147 (698)
++.++++++.+++.. .+..+++|++|++++|.++.. + .+..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 445566666666443 467778888888888877654 3 57778888888888888876544 77888888888888
Q ss_pred CcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcC
Q 005401 148 NNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEI 227 (698)
Q Consensus 148 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 227 (698)
|++++. +. +.. ++|++|++++|.+++. ..+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++.
T Consensus 95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~--~~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 95 NRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK--SIV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC--BCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC--CCh-HHccCCCCCEEECCCCcCcch-
Confidence 887753 32 222 7788888888877754 24777777777777777776 233 566777777777777777655
Q ss_pred CccccCCCCCCEEEccCCCCccc
Q 005401 228 PESLTRLTKLKNLDLSFNGLTGS 250 (698)
Q Consensus 228 ~~~l~~l~~L~~L~l~~n~l~~~ 250 (698)
..+..+++|+.|++++|.+...
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHhccCCCCCEEeCCCCcccCC
Confidence 4566777777777777776643
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1e-17 Score=156.79 Aligned_cols=153 Identities=19% Similarity=0.272 Sum_probs=98.3
Q ss_pred cCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccE
Q 005401 87 CRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLES 166 (698)
Q Consensus 87 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 166 (698)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 445667777777776653 33 46667777777777775542 235666777777777777777666666777777777
Q ss_pred EEccCcccCCccCccccCcCCCcEeeccCCC-CCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCC
Q 005401 167 LSLFNNLLNGTISSSLGNISTLKELRLAYNP-FQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFN 245 (698)
Q Consensus 167 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~-~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 245 (698)
|++++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.+++.. .+..+++|+.|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~--~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT--DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC--CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc--ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence 7777777776666666777777777777776 44 333 4666666777777776666432 4566666666666666
Q ss_pred CCc
Q 005401 246 GLT 248 (698)
Q Consensus 246 ~l~ 248 (698)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 654
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=4.5e-19 Score=198.91 Aligned_cols=218 Identities=20% Similarity=0.162 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhcCC-CCCCCCCCCCCCCCCCCCcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCC
Q 005401 23 QDGLYLRRVKLGLS-DPTDSLASWDDTRVDTPCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNY 101 (698)
Q Consensus 23 ~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~~~C~w~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~ 101 (698)
.++.++++....+. ..+..-..|.... ...+.|.+..+. .++++.|+|.++.+.... ..+ |+.++|+.|.
T Consensus 132 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s--~~~~~~l~L~~n~~~~~~-~~~-----l~~l~Ls~~~ 202 (727)
T 4b8c_D 132 CTKQALMEMADTLTDSKTAKKQQPTGDS-TPSGTATNSAVS--TPLTPKIELFANGKDEAN-QAL-----LQHKKLSQYS 202 (727)
T ss_dssp CCCHHHHHHHHHHHHHHTTC------------------------------------------------------------
T ss_pred cchhhhhhhhhhcccccCcccCCCcCCC-CccccCCCceec--CCccceEEeeCCCCCcch-hhH-----hhcCccCccc
Confidence 34456666654432 1112233454433 234678777665 367999999998887642 222 3334444443
Q ss_pred Ccc---------cCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCc
Q 005401 102 INS---------SLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNN 172 (698)
Q Consensus 102 ~~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 172 (698)
+.+ ..+..|..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|
T Consensus 203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred ccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence 332 34667788888888888888887 55555667888888888888888 67777888888888888888
Q ss_pred ccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCC-CCEEEccCCCCcccC
Q 005401 173 LLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTK-LKNLDLSFNGLTGSI 251 (698)
Q Consensus 173 ~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~ 251 (698)
.++ .+|..+.++++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++..|..+..+.. +..+++++|.+++.+
T Consensus 281 ~l~-~lp~~~~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 281 RLT-SLPAELGSCFQLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp CCS-SCCSSGGGGTTCSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred cCC-ccChhhcCCCCCCEEECCCCCCC--ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 888 55777888888888888888876 67777888888888888888888777766644321 223667777777666
Q ss_pred Ccc
Q 005401 252 PSS 254 (698)
Q Consensus 252 ~~~ 254 (698)
|..
T Consensus 358 p~~ 360 (727)
T 4b8c_D 358 PHE 360 (727)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
No 121
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.73 E-value=2.8e-16 Score=164.22 Aligned_cols=335 Identities=14% Similarity=0.038 Sum_probs=171.5
Q ss_pred CCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcC
Q 005401 78 LSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPAS 157 (698)
Q Consensus 78 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 157 (698)
++.+-..+|.++.+|+.+.|..+ ++.+...+|.+|++|+.+++..+ +..+...+|.++++|+.+.+..+ +......+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 34445667777778888888644 66666777778888888777654 55566667777777777666543 44344555
Q ss_pred ccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCC
Q 005401 158 FGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKL 237 (698)
Q Consensus 158 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 237 (698)
|.++..++...... ...+...+|.++++|+.+.+..+. ..+...+|..+++|
T Consensus 136 F~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~--------------------------~~I~~~~F~~c~~L 187 (394)
T 4fs7_A 136 FKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM--------------------------ETLHNGLFSGCGKL 187 (394)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC--------------------------CEECTTTTTTCTTC
T ss_pred eecccccccccCcc--ccccchhhhcccCCCcEEecCCcc--------------------------ceeccccccCCCCc
Confidence 66554433332222 222333445555555555554432 11222334444444
Q ss_pred CEEEccCCCCcccCCccccCCCCCceeeccCCcceeccCcccccccccceeccCCCccccccCcccccccccEEEccCcc
Q 005401 238 KNLDLSFNGLTGSIPSSITEMKSIEQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENR 317 (698)
Q Consensus 238 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 317 (698)
+.+++..+ ++.....+|.++..|+.+.+..+... +.........|+.+.+....
T Consensus 188 ~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~----------------------- 241 (394)
T 4fs7_A 188 KSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF----------------------- 241 (394)
T ss_dssp CBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-----------------------
T ss_pred eEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-----------------------
Confidence 44444333 22233344444555555544433221 11112222333333322110
Q ss_pred ccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCcc
Q 005401 318 LEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQS 397 (698)
Q Consensus 318 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 397 (698)
...-...+.++..++.+.+..+... +....|..+..++.+....+.+ ....|..+.+|+.+.+.++ +..+...+
T Consensus 242 -~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~a 315 (394)
T 4fs7_A 242 -TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEA 315 (394)
T ss_dssp -CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTT
T ss_pred -eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhh
Confidence 0011223444455555555444322 3344455555555555544322 2234555566666665443 44444555
Q ss_pred ccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCce
Q 005401 398 LGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLV 477 (698)
Q Consensus 398 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 477 (698)
|.+|.+|+.+++..+ ++.+...+|.+|.+|+.+++..+ ++.+...+|.+|.+|+.+++..+ +. .+..+|.+|++|+
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 666666666666533 55455566666666666666554 55555566666666776666544 22 2234566666666
Q ss_pred EE
Q 005401 478 EF 479 (698)
Q Consensus 478 ~L 479 (698)
.+
T Consensus 392 ~I 393 (394)
T 4fs7_A 392 WI 393 (394)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=7.8e-18 Score=165.01 Aligned_cols=168 Identities=17% Similarity=0.198 Sum_probs=96.2
Q ss_pred CCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeecc
Q 005401 379 SLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVS 458 (698)
Q Consensus 379 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 458 (698)
.++.++++++.+.+.. .+..+++|++|++++|.++.. + .+..+++|+.|++++|++++..+ +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444555555555332 355566666666666666533 2 45556666666666666655433 5566666666666
Q ss_pred CccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccC
Q 005401 459 RNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEI 538 (698)
Q Consensus 459 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 538 (698)
+|++++ +|.. .. ++|+.|++++|.+++. ..+..+++|++|++++|++++. + .+..+++|++|+|++|++++.
T Consensus 94 ~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 666653 2221 11 5666666666666543 2356666666666666666643 2 456666666666666666644
Q ss_pred CcccCCCCCCCEEeCCCCcCccc
Q 005401 539 PSEIGNLPVLNYLDLSGNLFSGK 561 (698)
Q Consensus 539 ~~~~~~l~~L~~L~Ls~N~l~~~ 561 (698)
..+..+++|+.|++++|.+++.
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHhccCCCCCEEeCCCCcccCC
Confidence 4566666666666666666543
No 123
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.72 E-value=5.2e-16 Score=162.12 Aligned_cols=335 Identities=12% Similarity=0.046 Sum_probs=227.6
Q ss_pred CcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCcc
Q 005401 102 INSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSS 181 (698)
Q Consensus 102 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 181 (698)
++.+...+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ ++.....+|.++.+|+.+.+..+ +..+...+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 45556667777777777777643 55556666777777777776543 44344455556655555444322 22222222
Q ss_pred ccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCC
Q 005401 182 LGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSI 261 (698)
Q Consensus 182 ~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 261 (698)
| .++..++.... .........+|.++++|+.+.+..+- .......|..+.+|
T Consensus 136 F-------------------------~~~~~~~~~~~--~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L 187 (394)
T 4fs7_A 136 F-------------------------KGCDFKEITIP--EGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKL 187 (394)
T ss_dssp T-------------------------TTCCCSEEECC--TTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTC
T ss_pred e-------------------------ecccccccccC--ccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCc
Confidence 3 23222221111 11222334568888888888887553 33556678888888
Q ss_pred ceeeccCCcceeccCcccccccccceeccCCCccccccCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCc
Q 005401 262 EQIELFKNSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNK 341 (698)
Q Consensus 262 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 341 (698)
+.+.+..+ +.......|.++..|+.+.+..+... +.+.......|+.+.+...
T Consensus 188 ~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-------------------------i~~~~~~~~~l~~i~ip~~- 240 (394)
T 4fs7_A 188 KSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-------------------------LGDFALSKTGVKNIIIPDS- 240 (394)
T ss_dssp CBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-------------------------ECTTTTTTCCCCEEEECTT-
T ss_pred eEEEcCCC-ceEeCchhhccccccceeecCCCceE-------------------------eehhhcccCCCceEEECCC-
Confidence 88888766 44445556777777776655443221 1122334567888888754
Q ss_pred CCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCcc
Q 005401 342 LRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEM 421 (698)
Q Consensus 342 l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 421 (698)
++.+....+..+..++.+.+..+... .....|..+..++.+....+.+ ....|..+.+|+.+.+..+ ++.+...+
T Consensus 241 ~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~a 315 (394)
T 4fs7_A 241 FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEA 315 (394)
T ss_dssp CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTT
T ss_pred ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhh
Confidence 34455667889999999999887443 6667888999999998876543 3457889999999999865 67677889
Q ss_pred ccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCC
Q 005401 422 FWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLG 501 (698)
Q Consensus 422 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 501 (698)
|.+|.+|+.+++.++ ++.+...+|.+|.+|+.+++..+ ++.....+|.+|.+|+++++..+ +. .+..+|.++++|+
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 999999999999754 77777889999999999999877 66667789999999999999765 33 3356788899888
Q ss_pred eE
Q 005401 502 NL 503 (698)
Q Consensus 502 ~L 503 (698)
.+
T Consensus 392 ~I 393 (394)
T 4fs7_A 392 WI 393 (394)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=2.7e-19 Score=194.37 Aligned_cols=106 Identities=25% Similarity=0.317 Sum_probs=56.3
Q ss_pred ceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCC
Q 005401 476 LVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSG 555 (698)
Q Consensus 476 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 555 (698)
|+.|++++|.+++ +|. +..+++|+.|+|++|.++ .+|..+.++++|++|+|++|++++ +| .++.+++|++|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4555555555553 333 555555555555555555 445555555555555555555553 34 455555555555555
Q ss_pred CcCcccC-cccccccc-cCeEEcccCcCcccCC
Q 005401 556 NLFSGKI-PLELQNLR-LNVLNLSNNRLSGELP 586 (698)
Q Consensus 556 N~l~~~~-p~~~~~~~-L~~L~ls~N~l~~~~~ 586 (698)
|.+++.. |..+..++ |+.|++++|++++.+|
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 5555544 55555554 5555555555555444
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.71 E-value=5.7e-16 Score=160.78 Aligned_cols=217 Identities=10% Similarity=0.101 Sum_probs=108.5
Q ss_pred CCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccC
Q 005401 356 LTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELAD 435 (698)
Q Consensus 356 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 435 (698)
|+.+.+.. .+....+.+|.+|++|+.+++.+|++..+....|. +.+|+.+.+..+ ++.+...+|.+|++|+.+++..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 44444443 33333334444444444444444444433333333 244444444422 3334444444444444444443
Q ss_pred CccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCccc-----ccccchhccCCCCCeEEcccCcc
Q 005401 436 NSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFA-----GQIPGSLAKLSQLGNLDLSENEL 510 (698)
Q Consensus 436 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l 510 (698)
+ ++.+...+|.+ .+|+.+.+. +.++.....+|..|++|+.+++.+|.+. ...+.+|.+|++|+.++|. +.+
T Consensus 236 ~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i 311 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESI 311 (401)
T ss_dssp T-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTC
T ss_pred C-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cce
Confidence 2 33333344444 345555552 2333333444555555555555444332 2344556666666666666 335
Q ss_pred ccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc--cCeEEcccCcC
Q 005401 511 SGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR--LNVLNLSNNRL 581 (698)
Q Consensus 511 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~--L~~L~ls~N~l 581 (698)
+.+....|.++.+|+.++|..| ++..-+.+|.++ +|+.+++++|.+....+..|..++ ++.+.+..+.+
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 5455556666666666666444 544555666666 677777777666665555565553 56666655543
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=6.6e-16 Score=160.30 Aligned_cols=265 Identities=14% Similarity=0.094 Sum_probs=191.3
Q ss_pred cccceeccCCCccccccCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcc
Q 005401 283 TTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLS 362 (698)
Q Consensus 283 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls 362 (698)
..++.+.+.. .++......|...+|+.+.+..+ ++..-..+|.++ +|+.+.+.+ .++.+.+.+|.++++|+.++++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 4444554443 23434444555557888888766 554555667664 688888876 6666677778888888888888
Q ss_pred cCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCcccccc
Q 005401 363 YNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKI 442 (698)
Q Consensus 363 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 442 (698)
+|.++.....+|. +.+|+.+.+..+ +..+...+|.+|++|+.+++..+ ++.+...+|.+ .+|+.+.+ .+.++.+.
T Consensus 189 ~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~ 263 (401)
T 4fdw_A 189 KTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIA 263 (401)
T ss_dssp TSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEEC
T ss_pred CCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEC
Confidence 8888765555555 578888888744 66677778888888888888764 56566777777 67888888 45566667
Q ss_pred chhhhcCCCCCeeeccCccce-----eecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchh
Q 005401 443 SKSISGANNLSSLLVSRNNFS-----GSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEG 517 (698)
Q Consensus 443 ~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 517 (698)
..+|.+|++|+.+++.+|.+. ...+.+|..|++|+.+++. +.+...-..+|.+|++|+.++|..+ ++.+.+..
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 778888888888888877664 3556778888888888888 4466666777888888888888655 66566677
Q ss_pred hhccCCCCEEeCCCCcCcccCCcccCCCC-CCCEEeCCCCcCc
Q 005401 518 IESWKNINELNLANNRLSGEIPSEIGNLP-VLNYLDLSGNLFS 559 (698)
Q Consensus 518 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~ 559 (698)
|.++ +|+++++++|.+....+..|.+++ .++.|.+..+.+.
T Consensus 342 F~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 8888 888888888888766667777774 6778877777654
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=7.7e-17 Score=149.87 Aligned_cols=138 Identities=23% Similarity=0.307 Sum_probs=108.1
Q ss_pred CCCeeeccCccceeecCc-cccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeC
Q 005401 451 NLSSLLVSRNNFSGSIPD-EVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNL 529 (698)
Q Consensus 451 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 529 (698)
++++|++++|++++..+. .+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 677777777777655543 4777888888888888888888888889999999999999999888888999999999999
Q ss_pred CCCcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccccCeEEcccCcCcccCChh
Q 005401 530 ANNRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLRLNVLNLSNNRLSGELPPL 588 (698)
Q Consensus 530 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~~~~ 588 (698)
++|++++..|..|..+++|++|+|++|.+++..+......-++...+.++...|.-|..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~ 168 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK 168 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTT
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChH
Confidence 99999988899999999999999999999986653211101333455666677766654
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=6.1e-19 Score=191.56 Aligned_cols=187 Identities=23% Similarity=0.207 Sum_probs=96.8
Q ss_pred CCCCCCEEEccCCCCcccCCccccCCCCCceeeccCCc-------------ceeccCcccccccccceec-cCCCccccc
Q 005401 233 RLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFKNS-------------LSGELPVKWVNMTTLLRFD-ASMNQLTGT 298 (698)
Q Consensus 233 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~~~~L~~L~-l~~n~l~~~ 298 (698)
.+++|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 3444455555555444 344445555555555544332 3334455556666666665 4444332
Q ss_pred cCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCC
Q 005401 299 IPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKG 378 (698)
Q Consensus 299 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 378 (698)
.++.+.+++|.+....+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..++
T Consensus 424 --------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 424 --------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp --------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred --------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence 23334444444442111 235666666666654 343 555666666666666665 4555555555
Q ss_pred CCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCcc-CccccCCCCCCEEEccCCccccc
Q 005401 379 SLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSV-PEMFWGLPHMYLFELADNSFTGK 441 (698)
Q Consensus 379 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~ 441 (698)
+|+.|+|++|.+++ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.+++.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 55566655555554 33 4555555555555555555544 55555555555555555555544
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=1.7e-17 Score=186.07 Aligned_cols=155 Identities=21% Similarity=0.242 Sum_probs=53.3
Q ss_pred CCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccce---------ecCcccCCCCCCCEEecccCcCcccCCccccC
Q 005401 330 KNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSG---------EIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGK 400 (698)
Q Consensus 330 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~---------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 400 (698)
+.++.|++.+|.+... +..+ ++.++|+.|.+.+ ..+..+..++.|+.|+|++|.+. .+|..+..
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFK 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGG
T ss_pred CccceEEeeCCCCCcc-hhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcC
Confidence 4567777777777642 2222 3334444443322 22334444445555555555544 33333334
Q ss_pred CCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEE
Q 005401 401 CRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFS 480 (698)
Q Consensus 401 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 480 (698)
+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+
T Consensus 246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence 444555555555444 33444444444444444444444 33444444444444444444443 3344444444444444
Q ss_pred CCCCcccccccchh
Q 005401 481 GDGNKFAGQIPGSL 494 (698)
Q Consensus 481 l~~n~l~~~~~~~~ 494 (698)
|++|.+++.+|..+
T Consensus 323 L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 323 VEGNPLEKQFLKIL 336 (727)
T ss_dssp CTTSCCCSHHHHHH
T ss_pred CCCCccCCCChHHH
Confidence 44444444444433
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=2.6e-16 Score=144.45 Aligned_cols=139 Identities=21% Similarity=0.253 Sum_probs=114.1
Q ss_pred CCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCC
Q 005401 452 LSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLAN 531 (698)
Q Consensus 452 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 531 (698)
.+.+++++++++ .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 356777777766 344332 36788888888888877777788899999999999999977777789999999999999
Q ss_pred CcCcccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChh-hhhhc
Q 005401 532 NRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL-YAKEM 593 (698)
Q Consensus 532 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~-~~~~~ 593 (698)
|++++..+..|..+++|++|++++|.+++..+..+..++ |++|++++|++.|.||.. ++..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~ 149 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 149 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHH
Confidence 999977777789999999999999999987777777777 999999999999999843 44433
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=4.7e-16 Score=141.38 Aligned_cols=131 Identities=23% Similarity=0.205 Sum_probs=57.4
Q ss_pred CCCEEEccCCccc-cccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEc
Q 005401 427 HMYLFELADNSFT-GKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDL 505 (698)
Q Consensus 427 ~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 505 (698)
+|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+|
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3334444444333 22333334444444444444444322 33334444444444444444334444444455555555
Q ss_pred ccCccccccc-hhhhccCCCCEEeCCCCcCcccCC---cccCCCCCCCEEeCCCCcCc
Q 005401 506 SENELSGGIP-EGIESWKNINELNLANNRLSGEIP---SEIGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 506 s~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~ 559 (698)
++|.+++..+ ..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555443211 344445555555555555543222 24445555555555555444
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=7e-16 Score=140.27 Aligned_cols=113 Identities=20% Similarity=0.199 Sum_probs=48.6
Q ss_pred cCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCCCCCCcccccCCCCC
Q 005401 134 LSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNL 213 (698)
Q Consensus 134 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L 213 (698)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.++++|++|++++|.++....+..+..+++|
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L 122 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL 122 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCC
T ss_pred HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCC
Confidence 33344444444444444322 3344444444444444444433333333444444444444444411111344444445
Q ss_pred CEEEcccCCCCCcCC---ccccCCCCCCEEEccCCCCc
Q 005401 214 EYLWLSGCNLLGEIP---ESLTRLTKLKNLDLSFNGLT 248 (698)
Q Consensus 214 ~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~ 248 (698)
++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 123 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 123 KSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 555555444443333 24444555555555555443
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=6.2e-16 Score=137.47 Aligned_cols=126 Identities=23% Similarity=0.275 Sum_probs=66.2
Q ss_pred CCCCeeeccCccce-eecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEe
Q 005401 450 NNLSSLLVSRNNFS-GSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELN 528 (698)
Q Consensus 450 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 528 (698)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34455555555554 34444445555555555555555443 3455555555555555555554555555555556666
Q ss_pred CCCCcCccc-CCcccCCCCCCCEEeCCCCcCcccCc---ccccccc-cCeEEcc
Q 005401 529 LANNRLSGE-IPSEIGNLPVLNYLDLSGNLFSGKIP---LELQNLR-LNVLNLS 577 (698)
Q Consensus 529 Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~~~-L~~L~ls 577 (698)
+++|++++. .+..+..+++|++|++++|.+++..+ ..+..++ |+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666555532 22455555556666666665555444 3444444 5555554
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=7e-16 Score=137.13 Aligned_cols=128 Identities=20% Similarity=0.234 Sum_probs=81.3
Q ss_pred CCCCEEEccCCccc-cccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEE
Q 005401 426 PHMYLFELADNSFT-GKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLD 504 (698)
Q Consensus 426 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 504 (698)
++++.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444455444444 34444445555555555555555533 4455666666677777766665666666677777777
Q ss_pred cccCccccc-cchhhhccCCCCEEeCCCCcCcccCC---cccCCCCCCCEEeCCC
Q 005401 505 LSENELSGG-IPEGIESWKNINELNLANNRLSGEIP---SEIGNLPVLNYLDLSG 555 (698)
Q Consensus 505 Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~ 555 (698)
+++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|++||+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777777753 33667777778888888887775544 4677778888887763
No 135
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.61 E-value=9.5e-14 Score=144.94 Aligned_cols=113 Identities=11% Similarity=0.174 Sum_probs=64.7
Q ss_pred CCCccccCCC-CCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCC---CcccCccccCCCCCCCEEECCCCcCcccCCc
Q 005401 81 PFPIFFCRLP-YLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNL---LVGAIPATLSQLKNLKSLELQENNFTGDIPA 156 (698)
Q Consensus 81 ~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 156 (698)
+-..+|.++. .|+.+.+..+ ++.+...+|.+|.+|+.+.++.|. ++.+...+|.++.+|+.+.+..+ ++.....
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 3345666664 4777777654 666666677777777777765542 44455566666666666665543 3434445
Q ss_pred CccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCC
Q 005401 157 SFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYN 196 (698)
Q Consensus 157 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 196 (698)
+|..+.+|+.+.+..+ +..+....|.++..|+.+.+..+
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce
Confidence 5666666666666432 33344445555555555555443
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=9.6e-15 Score=135.55 Aligned_cols=126 Identities=24% Similarity=0.293 Sum_probs=98.9
Q ss_pred EEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCc
Q 005401 70 SVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENN 149 (698)
Q Consensus 70 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 149 (698)
.+++++++++.. |..+ .++|++|+|++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|+|++|.
T Consensus 14 ~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSSC-CSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 466677777743 3333 257888999988886 455788888888888888888888877888888888888888888
Q ss_pred CcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCC
Q 005401 150 FTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQ 199 (698)
Q Consensus 150 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~ 199 (698)
+++..+..|..+++|++|++++|.++...+..|..+++|++|++++|++.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88777778888888888888888888776667777788888888777765
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.9e-14 Score=131.94 Aligned_cols=133 Identities=23% Similarity=0.293 Sum_probs=101.8
Q ss_pred CCCcccccccCCCCCcEEEEECCCCCCCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCCCCCcccCc
Q 005401 52 TPCHWRGVSCDPLTQRVTSVNLSQSQLSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSNLLVGAIP 131 (698)
Q Consensus 52 ~~C~w~g~~c~~~~~~v~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 131 (698)
+.|.|+++.|. +++++... ..+ .++|++|++++|.+++..+..|..+++|++|++++|.+.+..+
T Consensus 5 C~C~~~~l~~~------------~~~l~~~p-~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (177)
T 2o6r_A 5 CSCSGTEIRCN------------SKGLTSVP-TGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69 (177)
T ss_dssp CEEETTEEECC------------SSCCSSCC-TTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CEeCCCEEEec------------CCCCccCC-CCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh
Confidence 34677776664 34444332 222 3688999999998888777778888889999999888887777
Q ss_pred cccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCCcEeeccCCCCC
Q 005401 132 ATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTLKELRLAYNPFQ 199 (698)
Q Consensus 132 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~ 199 (698)
..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus 70 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 77888888888888888888777777788888888888888888766666777778888888877766
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=7e-15 Score=133.47 Aligned_cols=115 Identities=22% Similarity=0.259 Sum_probs=96.5
Q ss_pred ceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCC
Q 005401 476 LVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSG 555 (698)
Q Consensus 476 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 555 (698)
.+.+++++|.++. +|..+ .++|++|+|++|.+++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4577788777764 55444 37899999999999988888999999999999999999977777789999999999999
Q ss_pred CcCcccCcccccccc-cCeEEcccCcCcccCCh-hhhhhc
Q 005401 556 NLFSGKIPLELQNLR-LNVLNLSNNRLSGELPP-LYAKEM 593 (698)
Q Consensus 556 N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~-~~~~~~ 593 (698)
|+|++..+..|..++ |++|++++|+|+|.|+. .|+..|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~ 127 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRW 127 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHH
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHH
Confidence 999988888888887 99999999999999983 355444
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.56 E-value=3.3e-13 Score=140.80 Aligned_cols=159 Identities=12% Similarity=0.101 Sum_probs=94.6
Q ss_pred CcccCCcCCcCCC-CCCEEECCCCCCcccCccccCCCCCCCEEECCCCc---CcccCCcCccCCCCccEEEccCcccCCc
Q 005401 102 INSSLPLDISTCR-NLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENN---FTGDIPASFGEFTQLESLSLFNNLLNGT 177 (698)
Q Consensus 102 ~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 177 (698)
++.+...+|.++. .|+.+.+..+ ++.+...+|.+|++|+.+.+..|. ++.....+|..+.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 4556677888874 5888888754 666777888888888888887653 55455667777777777766543 4445
Q ss_pred cCccccCcCCCcEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccC
Q 005401 178 ISSSLGNISTLKELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITE 257 (698)
Q Consensus 178 ~~~~~~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 257 (698)
...+|.++.+|+.+.+..+... .-...|..+..|+.+.+..+ ++.+...+|.. ..|+.+.+..+- ......++..
T Consensus 129 ~~~aF~~c~~L~~i~lp~~~~~--I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~ 203 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEGVTS--VADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSE 203 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTCCE--ECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTT
T ss_pred hhhhhhhhcccccccccceeee--ecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhh
Confidence 5566777777777777544322 11234556666666666543 33333334432 456666554432 2233344444
Q ss_pred CCCCceeecc
Q 005401 258 MKSIEQIELF 267 (698)
Q Consensus 258 l~~L~~L~l~ 267 (698)
+..+......
T Consensus 204 c~~l~~~~~~ 213 (394)
T 4gt6_A 204 CFALSTITSD 213 (394)
T ss_dssp CTTCCEEEEC
T ss_pred ccccceeccc
Confidence 5555444433
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=1.1e-14 Score=133.40 Aligned_cols=65 Identities=25% Similarity=0.280 Sum_probs=28.6
Q ss_pred hccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCc--ccCCCCCCCEEeCCCCcCc
Q 005401 494 LAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPS--EIGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 494 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~ 559 (698)
+..+++|++|+|++|.+++..+..+..+++|++|+|++|+++ .+|. .+..+++|++|++++|.++
T Consensus 60 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 334444444444444444333333344444444444444443 2332 3444444444444444444
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=9.8e-15 Score=133.65 Aligned_cols=136 Identities=17% Similarity=0.158 Sum_probs=116.1
Q ss_pred ccccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCC
Q 005401 420 EMFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQ 499 (698)
Q Consensus 420 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 499 (698)
..+..+++|+.|++++|.++.. +......++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3567889999999999999855 44333344999999999999865 67889999999999999999776677799999
Q ss_pred CCeEEcccCccccccch--hhhccCCCCEEeCCCCcCcccCCcc----cCCCCCCCEEeCCCCcCcc
Q 005401 500 LGNLDLSENELSGGIPE--GIESWKNINELNLANNRLSGEIPSE----IGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 500 L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~ 560 (698)
|++|++++|.++ .+|. .+..+++|++|++++|.++ .+|.. +..+++|++||+++|.+..
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999997 4555 7899999999999999998 56664 8899999999999998764
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=2.6e-14 Score=130.09 Aligned_cols=114 Identities=21% Similarity=0.291 Sum_probs=93.1
Q ss_pred eEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCC
Q 005401 477 VEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGN 556 (698)
Q Consensus 477 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 556 (698)
+.+++++|.+. .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777775 4555443 78899999999999888888999999999999999999766667889999999999999
Q ss_pred cCcccCcccccccc-cCeEEcccCcCcccCChh-hhhhc
Q 005401 557 LFSGKIPLELQNLR-LNVLNLSNNRLSGELPPL-YAKEM 593 (698)
Q Consensus 557 ~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~-~~~~~ 593 (698)
+|++..+..+..++ |++|++++|+|.|.|+.. ++..|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~ 130 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNW 130 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHH
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHH
Confidence 99987777788887 999999999999998733 44433
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=2.5e-16 Score=147.35 Aligned_cols=115 Identities=25% Similarity=0.269 Sum_probs=59.5
Q ss_pred hhhcCCCCCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCC
Q 005401 445 SISGANNLSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNI 524 (698)
Q Consensus 445 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 524 (698)
.+..+++|++|++++|.+++ +| .+..+++|+.|++++|.+. .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 44444444444444444443 33 4444455555555555444 334444445556666666666554 23 45555666
Q ss_pred CEEeCCCCcCcccCC-cccCCCCCCCEEeCCCCcCcccCcc
Q 005401 525 NELNLANNRLSGEIP-SEIGNLPVLNYLDLSGNLFSGKIPL 564 (698)
Q Consensus 525 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~ 564 (698)
++|+|++|++++..+ ..+..+++|++|++++|.+++.+|.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 666666666653221 3455566666666666666555443
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=4e-16 Score=146.03 Aligned_cols=155 Identities=25% Similarity=0.314 Sum_probs=103.2
Q ss_pred ccCCCCCcEEEccCccCcCccCc------cccCCCCCCEEEccCCccccccchhhhcCCCCCeeeccCccceeecCcccc
Q 005401 398 LGKCRSLRRVRLRHNLLSGSVPE------MFWGLPHMYLFELADNSFTGKISKSISGANNLSSLLVSRNNFSGSIPDEVG 471 (698)
Q Consensus 398 ~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 471 (698)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 44455666666666666665555 66777777777777777766 34 6677777777777777776 5566666
Q ss_pred ccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccc-hhhhccCCCCEEeCCCCcCcccCCcc---------
Q 005401 472 LLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIP-EGIESWKNINELNLANNRLSGEIPSE--------- 541 (698)
Q Consensus 472 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~--------- 541 (698)
.+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 66777777777777765 33 46667777777777777764332 45667777777777777776554432
Q ss_pred -cCCCCCCCEEeCCCCcCc
Q 005401 542 -IGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 542 -~~~l~~L~~L~Ls~N~l~ 559 (698)
+..+++|+.|| +|.++
T Consensus 169 ~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 169 VVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHCSSCSEEC--CGGGT
T ss_pred HHHhCCCcEEEC--CcccC
Confidence 56666777665 55554
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=1.9e-13 Score=123.95 Aligned_cols=109 Identities=21% Similarity=0.255 Sum_probs=94.9
Q ss_pred CCeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCC
Q 005401 452 LSSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLAN 531 (698)
Q Consensus 452 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 531 (698)
.+.+++++|.++ .+|..+ .++|+.|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467888888887 456544 37889999999999988888899999999999999999988888889999999999999
Q ss_pred CcCcccCCcccCCCCCCCEEeCCCCcCcccCc
Q 005401 532 NRLSGEIPSEIGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 532 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
|++++..+..|..+++|++|+|++|.+++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 99997777789999999999999999987654
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.45 E-value=1.6e-13 Score=140.74 Aligned_cols=128 Identities=17% Similarity=0.143 Sum_probs=104.3
Q ss_pred EEECCCC-cccccccchhccCCCCCeEEccc-CccccccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCC
Q 005401 478 EFSGDGN-KFAGQIPGSLAKLSQLGNLDLSE-NELSGGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSG 555 (698)
Q Consensus 478 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 555 (698)
.++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|+|++..|..|.++++|++|||++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 676 4676 88888999999996 999988888899999999999999999988888999999999999999
Q ss_pred CcCcccCcccccccccCeEEcccCcCcccCChhhhhhcCCc---ccCCCCCCCCC
Q 005401 556 NLFSGKIPLELQNLRLNVLNLSNNRLSGELPPLYAKEMYRG---SFLGNPGLCGD 607 (698)
Q Consensus 556 N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~~~~~~~~~~~~---~~~~n~~~c~~ 607 (698)
|+|++..+..+..+.|+.|++++|+|.|.|+..|+..|... .+..+...|..
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~ 144 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHG 144 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSS
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCC
Confidence 99998887777777799999999999999998777665432 22334455643
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=4.2e-13 Score=122.01 Aligned_cols=108 Identities=18% Similarity=0.241 Sum_probs=93.0
Q ss_pred CeeeccCccceeecCccccccCCceEEECCCCcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCCC
Q 005401 453 SSLLVSRNNFSGSIPDEVGLLSNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLANN 532 (698)
Q Consensus 453 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 532 (698)
+.+++++|.+. .+|..+. ++|+.|++++|.+.+..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67788888876 5665543 78899999999999888889999999999999999999877777899999999999999
Q ss_pred cCcccCCcccCCCCCCCEEeCCCCcCcccCc
Q 005401 533 RLSGEIPSEIGNLPVLNYLDLSGNLFSGKIP 563 (698)
Q Consensus 533 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 563 (698)
+|++..+..|..+++|++|+|++|.+....+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 9997666679999999999999999986443
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.38 E-value=1.3e-10 Score=120.67 Aligned_cols=122 Identities=16% Similarity=0.092 Sum_probs=61.7
Q ss_pred hhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCC
Q 005401 324 ESIARSKNLSELKLFNNKLRGGLPSELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRS 403 (698)
Q Consensus 324 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 403 (698)
..+.++..|+.+.+..+ ++.+....|..+.+|+.+.+..+ +......+|.++.+|+.+.+.++.+..+...+|.+|.+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 34455555666665543 44344445555556666655432 33333445555555555555555555444555555555
Q ss_pred CcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhhcC
Q 005401 404 LRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSISGA 449 (698)
Q Consensus 404 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 449 (698)
|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++.+...+|.++
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 555555433 44444445555555555555332 333334444444
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.35 E-value=1.8e-10 Score=119.44 Aligned_cols=302 Identities=10% Similarity=0.075 Sum_probs=142.5
Q ss_pred CCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCCcCcccCCcCccCCCCccEEEccCcccCCccCccccCcCCC
Q 005401 109 DISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQENNFTGDIPASFGEFTQLESLSLFNNLLNGTISSSLGNISTL 188 (698)
Q Consensus 109 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 188 (698)
.+....+|+.+.+... ++.+...+|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 4556677888877643 55566677888888888887643 555556667766 5666665533 443444445443 56
Q ss_pred cEeeccCCCCCCCCCcccccCCCCCCEEEcccCCCCCcCCccccCCCCCCEEEccCCCCcccCCccccCCCCCceeeccC
Q 005401 189 KELRLAYNPFQPGQLPSQLSNLTNLEYLWLSGCNLLGEIPESLTRLTKLKNLDLSFNGLTGSIPSSITEMKSIEQIELFK 268 (698)
Q Consensus 189 ~~L~ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 268 (698)
+.+.+..+... .-...|.+ .+|+.+.+.. .++.....+|..+..++.+.+..+.........+. ...
T Consensus 116 ~~i~lp~~~~~--i~~~~F~~-~~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~ 182 (379)
T 4h09_A 116 DDFEFPGATTE--IGNYIFYN-SSVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL---------YNK 182 (379)
T ss_dssp SEEECCTTCCE--ECTTTTTT-CCCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE---------EET
T ss_pred ccccCCCcccc--cccccccc-ceeeeeeccc-eeeccccchhcccccccccccccccceeeccccee---------ccc
Confidence 66665543211 00111222 2333333322 12222223333344444433332221100000000 000
Q ss_pred CcceeccCcccccccccceeccCCCccccccCcccccccccEEEccCccccccCChhccCCCCCCEEEccCCcCCcCCCc
Q 005401 269 NSLSGELPVKWVNMTTLLRFDASMNQLTGTIPNELCELQLESLNLYENRLEGTLPESIARSKNLSELKLFNNKLRGGLPS 348 (698)
Q Consensus 269 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 348 (698)
.. .....+.... .+..+.+.... .......+..+..|+.+.+..+ +..+...
T Consensus 183 ~~---~~~~~~~~~~-----------------------~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~ 234 (379)
T 4h09_A 183 NK---TILESYPAAK-----------------------TGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDG 234 (379)
T ss_dssp TS---SEEEECCTTC-----------------------CCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTT
T ss_pred cc---ceeccccccc-----------------------cccccccccce-eEEeecccccccccceeeeccc-eeEEccc
Confidence 00 0000000000 12222222211 1122334455566666666543 3334445
Q ss_pred cccCCCCCCEEEcccCccceecCcccCCCCCCCEEecccCcCcccCCccccCCCCCcEEEccCccCcCccCccccCCCCC
Q 005401 349 ELGKYSPLTTLDLSYNQFSGEIPEGLCEKGSLEDLVLIYNSFSGKIPQSLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHM 428 (698)
Q Consensus 349 ~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 428 (698)
.+..+..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +.......|.+|++|+.+.+.++.++.+...+|.+|.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 5666666666666554 44444555666666666666432 333444556666666666666555555555566666666
Q ss_pred CEEEccCCccccccchhhhcCCCCCeeeccC
Q 005401 429 YLFELADNSFTGKISKSISGANNLSSLLVSR 459 (698)
Q Consensus 429 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 459 (698)
+.+++..+ ++.+...+|.+|.+|+.+.+..
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 66665432 4444445555555555555543
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=6.1e-14 Score=144.08 Aligned_cols=165 Identities=16% Similarity=0.141 Sum_probs=84.6
Q ss_pred CCCcEEEccCccCcCccCcccc-----CCCCCCEEEccCCccccccchhh-hcCCCCCeeeccCccceeecCccc-----
Q 005401 402 RSLRRVRLRHNLLSGSVPEMFW-----GLPHMYLFELADNSFTGKISKSI-SGANNLSSLLVSRNNFSGSIPDEV----- 470 (698)
Q Consensus 402 ~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~----- 470 (698)
+.|+.|++++|.++......+. ..++|+.|++++|.++......+ ..+++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 3455555555555432222211 12455555555555543222222 223455666666665543322222
Q ss_pred cccCCceEEECCCCccccc----ccchhccCCCCCeEEcccCccccc----cchhhhccCCCCEEeCCCCcCccc----C
Q 005401 471 GLLSNLVEFSGDGNKFAGQ----IPGSLAKLSQLGNLDLSENELSGG----IPEGIESWKNINELNLANNRLSGE----I 538 (698)
Q Consensus 471 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~ 538 (698)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+++. +++.+...++|++|+|++|.|++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2345566666666666432 333445566677777777766543 234455566677777777766542 2
Q ss_pred CcccCCCCCCCEEeCCCCcCcccCcccc
Q 005401 539 PSEIGNLPVLNYLDLSGNLFSGKIPLEL 566 (698)
Q Consensus 539 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 566 (698)
+..+...++|++|||++|.|+......+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 3334455667777777777665444333
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=5.1e-13 Score=137.19 Aligned_cols=160 Identities=19% Similarity=0.222 Sum_probs=123.3
Q ss_pred CCCCCEEEccCCccccccchhhhcC-----CCCCeeeccCccceeecCccc-cccCCceEEECCCCcccccccchh----
Q 005401 425 LPHMYLFELADNSFTGKISKSISGA-----NNLSSLLVSRNNFSGSIPDEV-GLLSNLVEFSGDGNKFAGQIPGSL---- 494 (698)
Q Consensus 425 l~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~---- 494 (698)
.+.|+.|++++|.++......+..+ ++|++|+|++|.++......+ ..+++|++|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4689999999999986554444433 799999999999875433333 346789999999999976544443
Q ss_pred -ccCCCCCeEEcccCccccc----cchhhhccCCCCEEeCCCCcCccc----CCcccCCCCCCCEEeCCCCcCcccCccc
Q 005401 495 -AKLSQLGNLDLSENELSGG----IPEGIESWKNINELNLANNRLSGE----IPSEIGNLPVLNYLDLSGNLFSGKIPLE 565 (698)
Q Consensus 495 -~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 565 (698)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+++. ++..+...++|++|||++|.|+......
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3468999999999999753 445557889999999999999853 3566778889999999999998743333
Q ss_pred ----ccccc-cCeEEcccCcCccc
Q 005401 566 ----LQNLR-LNVLNLSNNRLSGE 584 (698)
Q Consensus 566 ----~~~~~-L~~L~ls~N~l~~~ 584 (698)
+...+ |++|++++|+++..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 33334 99999999998754
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.26 E-value=8.7e-12 Score=127.81 Aligned_cols=105 Identities=24% Similarity=0.241 Sum_probs=73.2
Q ss_pred eeeccCc-cceeecCccccccCCceEEECCC-CcccccccchhccCCCCCeEEcccCccccccchhhhccCCCCEEeCCC
Q 005401 454 SLLVSRN-NFSGSIPDEVGLLSNLVEFSGDG-NKFAGQIPGSLAKLSQLGNLDLSENELSGGIPEGIESWKNINELNLAN 531 (698)
Q Consensus 454 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 531 (698)
.++.+++ +++ .+|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455555 555 3555 66667777777774 777766666777777777777777777777777777777777777777
Q ss_pred CcCcccCCcccCCCCCCCEEeCCCCcCccc
Q 005401 532 NRLSGEIPSEIGNLPVLNYLDLSGNLFSGK 561 (698)
Q Consensus 532 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 561 (698)
|+|++..+..|..++ |+.|+|++|.+...
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 777755555555555 77777777777753
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=6.2e-10 Score=113.09 Aligned_cols=85 Identities=15% Similarity=0.281 Sum_probs=53.5
Q ss_pred cCCCCCeEEcccCccccccchhhh---ccCCCCEEeCCCCcCccc----CCcccCCCCCCCEEeCCCCcCcccCcccccc
Q 005401 496 KLSQLGNLDLSENELSGGIPEGIE---SWKNINELNLANNRLSGE----IPSEIGNLPVLNYLDLSGNLFSGKIPLELQN 568 (698)
Q Consensus 496 ~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 568 (698)
.+++|++|+|++|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.++...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 467788888888777654433332 467788888888887753 3333455678888888888776543333332
Q ss_pred cccCeEEcccCc
Q 005401 569 LRLNVLNLSNNR 580 (698)
Q Consensus 569 ~~L~~L~ls~N~ 580 (698)
.-...+++++++
T Consensus 330 alg~~~~~~~~~ 341 (362)
T 2ra8_A 330 SLPMKIDVSDSQ 341 (362)
T ss_dssp HCCSEEECCSBC
T ss_pred HcCCEEEecCCc
Confidence 113457777766
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=1.8e-09 Score=109.69 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=89.3
Q ss_pred cccCCCCCcEEEccCccCcCccCccccCCCCCCEEEccCCccccccchhhh--cCCCCCeeeccC--ccceee-----cC
Q 005401 397 SLGKCRSLRRVRLRHNLLSGSVPEMFWGLPHMYLFELADNSFTGKISKSIS--GANNLSSLLVSR--NNFSGS-----IP 467 (698)
Q Consensus 397 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~--n~l~~~-----~~ 467 (698)
.+..+|+|+.|++++|.-. ..+. + .+++|+.|++..+.+.......+. .+++|+.|+|+. |...+. +.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3445566666666555211 1111 2 256666666666665543333333 566777776642 111111 00
Q ss_pred ccc--cccCCceEEECCCCcccccccchhc---cCCCCCeEEcccCccccc----cchhhhccCCCCEEeCCCCcCcccC
Q 005401 468 DEV--GLLSNLVEFSGDGNKFAGQIPGSLA---KLSQLGNLDLSENELSGG----IPEGIESWKNINELNLANNRLSGEI 538 (698)
Q Consensus 468 ~~~--~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~ 538 (698)
..+ ..+++|+.|++.+|.+....+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.++...
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 111 2467888888888877644333332 477888999988888764 3344466788999999988887543
Q ss_pred CcccCC-CCCCCEEeCCCCc
Q 005401 539 PSEIGN-LPVLNYLDLSGNL 557 (698)
Q Consensus 539 ~~~~~~-l~~L~~L~Ls~N~ 557 (698)
-..+.. + ...++++.++
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 333332 2 3568888887
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=1.7e-08 Score=92.36 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=28.7
Q ss_pred hccCCCCCeEEcccCccccc----cchhhhccCCCCEEeC--CCCcCccc----CCcccCCCCCCCEEeCCCCcC
Q 005401 494 LAKLSQLGNLDLSENELSGG----IPEGIESWKNINELNL--ANNRLSGE----IPSEIGNLPVLNYLDLSGNLF 558 (698)
Q Consensus 494 ~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l 558 (698)
+...++|++|+|++|.+... +.+.+...++|++|+| ++|.+... +...+...++|++|+|++|.+
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 33344555555555555432 2233344444555555 44554431 222333334455555555544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=5.4e-09 Score=95.73 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=50.9
Q ss_pred CccccCCCCCCEEECCCC-CCccc----CCcCCcCCCCCCEEECCCCCCccc----CccccCCCCCCCEEECCCCcCccc
Q 005401 83 PIFFCRLPYLAQLSLYNN-YINSS----LPLDISTCRNLTDLNLGSNLLVGA----IPATLSQLKNLKSLELQENNFTGD 153 (698)
Q Consensus 83 ~~~~~~l~~L~~L~L~~n-~~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 153 (698)
...+...++|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344556667777777776 66543 223344556666666666666532 223344455666666666665532
Q ss_pred ----CCcCccCCCCccEEEc--cCcccC
Q 005401 154 ----IPASFGEFTQLESLSL--FNNLLN 175 (698)
Q Consensus 154 ----~~~~~~~l~~L~~L~L--~~n~l~ 175 (698)
+..++...++|++|++ ++|.++
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2333444455555555 455554
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.44 E-value=7.4e-08 Score=92.45 Aligned_cols=41 Identities=29% Similarity=0.415 Sum_probs=20.5
Q ss_pred cCCCCCeEEcccCcccc--ccchhhhccCCCCEEeCCCCcCcc
Q 005401 496 KLSQLGNLDLSENELSG--GIPEGIESWKNINELNLANNRLSG 536 (698)
Q Consensus 496 ~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~ 536 (698)
++++|+.|+|++|.+++ .+|..+..+++|+.|+|++|+|++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 44555555555555554 223444455555555555555543
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.42 E-value=5.9e-08 Score=93.15 Aligned_cols=80 Identities=25% Similarity=0.329 Sum_probs=54.6
Q ss_pred cccCCceEEECCCCcccc--cccchhccCCCCCeEEcccCccccccchhhhccC--CCCEEeCCCCcCcccCCc------
Q 005401 471 GLLSNLVEFSGDGNKFAG--QIPGSLAKLSQLGNLDLSENELSGGIPEGIESWK--NINELNLANNRLSGEIPS------ 540 (698)
Q Consensus 471 ~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~------ 540 (698)
..+++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|++++. +.+..+. +|++|+|++|.+.+.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 346667777777777765 3445667788888888888888754 3344444 788888888888765552
Q ss_pred -ccCCCCCCCEEe
Q 005401 541 -EIGNLPVLNYLD 552 (698)
Q Consensus 541 -~~~~l~~L~~L~ 552 (698)
.+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 356677787776
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.04 E-value=7.1e-06 Score=69.49 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=55.0
Q ss_pred CEEeCCCCcCc-ccCCcccCCCCCCCEEeCCCCcCcccCcccccccc-cCeEEcccCcCcccCChhhhhhcCC
Q 005401 525 NELNLANNRLS-GEIPSEIGNLPVLNYLDLSGNLFSGKIPLELQNLR-LNVLNLSNNRLSGELPPLYAKEMYR 595 (698)
Q Consensus 525 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-L~~L~ls~N~l~~~~~~~~~~~~~~ 595 (698)
..++.+++.++ ..+|..+. ++|++|||++|+|+...+..|..+. |+.|+|++|+|.|.|...|+..|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~ 81 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLA 81 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHH
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHH
Confidence 36777888776 34564432 4689999999999988888888887 9999999999999999887776653
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=1.3e-06 Score=77.42 Aligned_cols=34 Identities=9% Similarity=-0.004 Sum_probs=14.9
Q ss_pred CCCEEECCCCCCcccCCcCCcCCCCCCEEECCCC
Q 005401 91 YLAQLSLYNNYINSSLPLDISTCRNLTDLNLGSN 124 (698)
Q Consensus 91 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n 124 (698)
.|++||++++.++...-..+.+|++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3444555444444333333344444444444444
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.97 E-value=2.2e-06 Score=76.03 Aligned_cols=84 Identities=13% Similarity=0.145 Sum_probs=46.5
Q ss_pred CCceEEECCCCcccccccchhccCCCCCeEEcccCc-cccccchhhhcc----CCCCEEeCCCCc-CcccCCcccCCCCC
Q 005401 474 SNLVEFSGDGNKFAGQIPGSLAKLSQLGNLDLSENE-LSGGIPEGIESW----KNINELNLANNR-LSGEIPSEIGNLPV 547 (698)
Q Consensus 474 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 547 (698)
..|+.||+++|.++..--..+..+++|++|+|++|. +++.--..+..+ ++|++|+|++|. +++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 345556666555544433445566666666666664 544333334332 356666666663 55433344556667
Q ss_pred CCEEeCCCCc
Q 005401 548 LNYLDLSGNL 557 (698)
Q Consensus 548 L~~L~Ls~N~ 557 (698)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777776664
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=0.00011 Score=66.39 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=34.4
Q ss_pred chhccCCCCCeEEcccCccccc----cchhhhccCCCCEEeCCCCcCcc----cCCcccCCCCCCCEEeCCCC
Q 005401 492 GSLAKLSQLGNLDLSENELSGG----IPEGIESWKNINELNLANNRLSG----EIPSEIGNLPVLNYLDLSGN 556 (698)
Q Consensus 492 ~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N 556 (698)
.++..-+.|+.|+|++|.+... +.+.+..-+.|++|+|++|.|.+ .+-+.+...+.|++|+|++|
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 3344455566666666665532 22333444566666666666653 22334445556666666654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.31 E-value=9.5e-05 Score=66.80 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=68.7
Q ss_pred cCCCCCeeeccCc-ccee----ecCccccccCCceEEECCCCccccc----ccchhccCCCCCeEEcccCccccc----c
Q 005401 448 GANNLSSLLVSRN-NFSG----SIPDEVGLLSNLVEFSGDGNKFAGQ----IPGSLAKLSQLGNLDLSENELSGG----I 514 (698)
Q Consensus 448 ~~~~L~~L~l~~n-~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~ 514 (698)
.-+.|+.|+|++| ++.. .+.+.+..-+.|+.|+|++|.+... +...+..-+.|++|+|++|.|... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455666666654 4432 1223344456677777777776533 334455677888888888888754 3
Q ss_pred chhhhccCCCCEEeCCCCc---Ccc----cCCcccCCCCCCCEEeCCCCcCc
Q 005401 515 PEGIESWKNINELNLANNR---LSG----EIPSEIGNLPVLNYLDLSGNLFS 559 (698)
Q Consensus 515 ~~~~~~l~~L~~L~Ls~N~---l~~----~~~~~~~~l~~L~~L~Ls~N~l~ 559 (698)
.+.+..-..|++|+|++|. +.. .+...+...+.|+.|+++.|.+.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 3344555778899988653 332 23345566678888888877654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.83 E-value=0.0015 Score=55.10 Aligned_cols=57 Identities=25% Similarity=0.378 Sum_probs=36.4
Q ss_pred eEEcccCccc-cccchhhhccCCCCEEeCCCCcCcccCCcccCCCCCCCEEeCCCCcCcc
Q 005401 502 NLDLSENELS-GGIPEGIESWKNINELNLANNRLSGEIPSEIGNLPVLNYLDLSGNLFSG 560 (698)
Q Consensus 502 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 560 (698)
.++.+++.++ ..+|..+. .+|++|+|++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 4566666665 23443332 357777777777775555667777777777777777754
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=92.71 E-value=0.11 Score=33.15 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=10.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhheeee
Q 005401 625 WIFGLIFLLAGVVFVVGVIWFYVKY 649 (698)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (698)
++.+++++++++++++..++++.++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhh
Confidence 4444444444444444333333333
No 166
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=87.27 E-value=0.058 Score=56.06 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=25.1
Q ss_pred ccchHH-HHHhCCCcCCeEecCCCceEEeC
Q 005401 670 IGFSEF-EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 670 ~~~~~~-~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
+.++++ .++++|.....||+|+||+||+|
T Consensus 64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~ 93 (437)
T 4aw2_A 64 SKVKQMRLHREDFEILKVIGRGAFGEVAVV 93 (437)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSEEEEEE
T ss_pred chhhcccCChhheEEEEEEEeCCCEEEEEE
Confidence 456677 78899999999999999999985
No 167
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=85.84 E-value=0.15 Score=50.48 Aligned_cols=16 Identities=31% Similarity=0.246 Sum_probs=13.5
Q ss_pred cCCeEecCCCceEEeC
Q 005401 683 EENLIGSGASGKSQEG 698 (698)
Q Consensus 683 ~~~~iG~gg~g~VYkg 698 (698)
-...||+|+||+||+|
T Consensus 45 l~~~LG~G~fG~Vy~a 60 (329)
T 4aoj_A 45 LKWELGEGAFGKVFLA 60 (329)
T ss_dssp EEEEEEECSSEEEEEE
T ss_pred EEEEEccCCCcEEEEE
Confidence 3456999999999986
No 168
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=85.73 E-value=0.46 Score=30.28 Aligned_cols=23 Identities=30% Similarity=0.085 Sum_probs=8.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhee
Q 005401 625 WIFGLIFLLAGVVFVVGVIWFYV 647 (698)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~ 647 (698)
+..+++++++++++++..++++.
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~ 34 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYV 34 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHHHHHHHHh
Confidence 33334443443333333333333
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=85.57 E-value=2 Score=33.57 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=25.8
Q ss_pred CCcCCCccccCCCCCCEEECCCCCCcccCCcCCcCCCCCCEEECCC
Q 005401 78 LSGPFPIFFCRLPYLAQLSLYNNYINSSLPLDISTCRNLTDLNLGS 123 (698)
Q Consensus 78 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~ 123 (698)
++.+-..+|.++..|+.+.|..+ ++.+...+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444556666666666666554 4455555666666666666554
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=81.76 E-value=3.6 Score=32.14 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=33.5
Q ss_pred CCCcccCCcCCcCCCCCCEEECCCCCCcccCccccCCCCCCCEEECCCC
Q 005401 100 NYINSSLPLDISTCRNLTDLNLGSNLLVGAIPATLSQLKNLKSLELQEN 148 (698)
Q Consensus 100 n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 148 (698)
..++.+...+|.+|.+|+.+.|..+ ++.+...+|.+|.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3456666677888888888887765 44466677777777777777653
No 171
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=81.56 E-value=0.3 Score=48.91 Aligned_cols=20 Identities=40% Similarity=0.489 Sum_probs=15.9
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.-...||+|+||+||||
T Consensus 64 ~~~~l~~~LG~G~fG~Vy~a 83 (353)
T 4ase_A 64 DRLKLGKPLGRGAFGQVIEA 83 (353)
T ss_dssp GGEEEEEEEEECSSEEEEEE
T ss_pred HHeEEeeEEecCCCeEEEEE
Confidence 34555667999999999986
No 172
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=76.67 E-value=0.41 Score=47.34 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=16.5
Q ss_pred HhCCCcCCeEecCCCceEEeC
Q 005401 678 ADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VYkg 698 (698)
.+.|.....||+|+||.||+|
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a 77 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRM 77 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEE
T ss_pred hhheEeCcEeccCCCeEEEEE
Confidence 344555667999999999985
No 173
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=76.22 E-value=0.34 Score=49.83 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=20.0
Q ss_pred HHHhCCCcCCeEecCCCceEEeC
Q 005401 676 EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 676 ~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
..++.|...+.||+||||.||+|
T Consensus 75 ~~~~~~~~~~~LG~G~fG~Vy~a 97 (413)
T 3dzo_A 75 ERPRTLVRGTVLGQEDPYAYLEA 97 (413)
T ss_dssp SCCEEEEEEEEEEEETTEEEEEE
T ss_pred CCceeEEEecccccCCCEEEEEE
Confidence 56677888889999999999986
No 174
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=75.70 E-value=1.1 Score=45.37 Aligned_cols=20 Identities=20% Similarity=0.493 Sum_probs=17.6
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
++|.....||+|+||.||+|
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~ 64 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSG 64 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC
T ss_pred hhceeeeEEeeCCCeEEEEE
Confidence 46777889999999999986
No 175
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=75.16 E-value=0.68 Score=46.00 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=14.4
Q ss_pred CCcCCeEecCCCceEEeC
Q 005401 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|..-..||+|+||+||+|
T Consensus 76 y~~~~~iG~G~fG~V~~a 93 (346)
T 4fih_A 76 LDNFIKIGEGSTGIVCIA 93 (346)
T ss_dssp EEEEEEEEECSSCEEEEE
T ss_pred cEEeEEeecCcCeEEEEE
Confidence 444456999999999985
No 176
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=72.68 E-value=0.62 Score=47.81 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=24.7
Q ss_pred ccchHH-HHHhCCCcCCeEecCCCceEEeC
Q 005401 670 IGFSEF-EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 670 ~~~~~~-~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
+.+++. ..+++|.....||+|+||.||+|
T Consensus 51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~ 80 (412)
T 2vd5_A 51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVV 80 (412)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSCEEEEE
T ss_pred hhhhhccCChhhEEEEEEEeeCCCeEEEEE
Confidence 456666 67889999999999999999974
No 177
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=72.10 E-value=0.89 Score=46.52 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=16.1
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|..-..||+|+||.||+|
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a 170 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIA 170 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEE
T ss_pred HhcEeeeEeccCcCcEEEEE
Confidence 34555677999999999985
No 178
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=72.06 E-value=0.83 Score=46.50 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=14.7
Q ss_pred CCcCCeEecCCCceEEeC
Q 005401 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.-...||+|+||+||+|
T Consensus 56 Y~~~~~lG~G~fG~V~~a 73 (398)
T 4b99_A 56 YEIIETIGNGAYGVVSSA 73 (398)
T ss_dssp EEEEEEEEECSSCEEEEE
T ss_pred eEEEEEEecccCeEEEEE
Confidence 444567999999999985
No 179
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=71.76 E-value=0.62 Score=45.69 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=18.0
Q ss_pred HhCCCcCCeEecCCCceEEeC
Q 005401 678 ADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VYkg 698 (698)
.++|.....||+||||+||+|
T Consensus 56 ~~~y~~~~~LG~G~~g~Vy~~ 76 (311)
T 3p1a_A 56 QQSFQRLSRLGHGSYGEVFKV 76 (311)
T ss_dssp HHHEEEEEEEEEETTEEEEEE
T ss_pred hhheeeeheeccCCCeEEEEE
Confidence 356888889999999999985
No 180
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=71.13 E-value=0.72 Score=46.41 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=19.0
Q ss_pred HHHhCCCcCCeEecCCCceEEeC
Q 005401 676 EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 676 ~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
..++.|.....||+||||+||+|
T Consensus 62 ~~~~~y~~~~~lG~G~~g~Vy~~ 84 (365)
T 3e7e_A 62 LGSKLVYVHHLLGEGAFAQVYEA 84 (365)
T ss_dssp CSSSEEEEEEEEEECSSEEEEEE
T ss_pred ECCEEEEEEEEeeccCCEEEEEE
Confidence 44566777788999999999986
No 181
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=70.74 E-value=0.78 Score=47.02 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=22.5
Q ss_pred chHH-HHHhCCCcCCeEecCCCceEEeC
Q 005401 672 FSEF-EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 672 ~~~~-~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
++++ .+++.|.....||+|+||.||+|
T Consensus 61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~ 88 (410)
T 3v8s_A 61 IRDLRMKAEDYEVVKVIGRGAFGEVQLV 88 (410)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEE
T ss_pred HHhcccCccccEEEEEEEcCCCEEEEEE
Confidence 4455 67788998999999999999975
No 182
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=65.96 E-value=1.3 Score=48.17 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=16.7
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
++|.-...||+||||.||+|
T Consensus 189 ddf~i~k~LG~G~fG~V~la 208 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGC 208 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEecccCeEEEEE
Confidence 34777788999999999974
No 183
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=65.74 E-value=1.4 Score=44.02 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=17.9
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005401 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
.++.|.....||+|+||.||+|
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~ 72 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRC 72 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEE
T ss_pred ccCcEEEeeEEeeCCCEEEEEE
Confidence 4456667788999999999985
No 184
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=64.44 E-value=1.4 Score=43.35 Aligned_cols=18 Identities=44% Similarity=0.695 Sum_probs=14.9
Q ss_pred CCcCCeEecCCCceEEeC
Q 005401 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.-...||+|+||.||+|
T Consensus 51 y~i~~~lG~G~~g~V~~~ 68 (325)
T 3kul_A 51 IHIEKIIGSGDSGEVCYG 68 (325)
T ss_dssp EEEEEEEEETTTEEEEEE
T ss_pred eEEeeEEEeCCCcEEEEE
Confidence 445678999999999985
No 185
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=63.78 E-value=1.5 Score=44.07 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=15.7
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.-...||+|+||.||+|
T Consensus 81 ~~~~~~~~LG~G~fg~Vy~a 100 (370)
T 2psq_A 81 DKLTLGKPLGEGCFGQVVMA 100 (370)
T ss_dssp GGEEEEEEESCCSSSEEEEE
T ss_pred HHCEeeeEEeeCCCeeEEEE
Confidence 34555677999999999975
No 186
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=62.82 E-value=1.5 Score=43.70 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=17.1
Q ss_pred HhCCCcCCeEecCCCceEEeC
Q 005401 678 ADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VYkg 698 (698)
++.|...+.||+|+||+||+|
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~a 73 (348)
T 1u5q_A 53 EKLFSDLREIGHGSFGAVYFA 73 (348)
T ss_dssp HHHEEEEEEEEECSSEEEEEE
T ss_pred hhheeeeeEEccCCCEEEEEE
Confidence 445666778999999999985
No 187
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=62.78 E-value=1.7 Score=42.97 Aligned_cols=18 Identities=28% Similarity=0.649 Sum_probs=14.5
Q ss_pred CCcCCeEecCCCceEEeC
Q 005401 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.....||+|+||.||+|
T Consensus 46 ~~~~~~lG~G~~g~Vy~~ 63 (333)
T 1mqb_A 46 VTRQKVIGAGEFGEVYKG 63 (333)
T ss_dssp EEEEEEEEECSSSEEEEE
T ss_pred hhcccEEecCCCeEEEEE
Confidence 344567999999999985
No 188
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=62.62 E-value=1.5 Score=44.15 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=16.2
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
++|.-...||+|+||.||+|
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~ 90 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEG 90 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEE
T ss_pred hHeEEeeEeeeCCCEEEEEE
Confidence 44556678999999999985
No 189
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=61.80 E-value=1.7 Score=42.82 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=18.9
Q ss_pred HHHhCCCcCCeEecCCCceEEeC
Q 005401 676 EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 676 ~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
-..++|.....||+|+||.||+|
T Consensus 43 ~~~~~~~~~~~lG~G~~g~Vy~~ 65 (333)
T 2i1m_A 43 FPRNNLQFGKTLGAGAFGKVVEA 65 (333)
T ss_dssp CCTTSEEEEEEEEECSSEEEEEE
T ss_pred CCHHHceeeeEeccCCCcceEEE
Confidence 34566777889999999999985
No 190
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=61.77 E-value=1.8 Score=43.63 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=14.0
Q ss_pred CcCCeEecCCCceEEeC
Q 005401 682 KEENLIGSGASGKSQEG 698 (698)
Q Consensus 682 ~~~~~iG~gg~g~VYkg 698 (698)
.....||+|+||.||+|
T Consensus 92 ~~~~~LG~G~fg~Vy~~ 108 (373)
T 3c1x_A 92 HFNEVIGRGHFGCVYHG 108 (373)
T ss_dssp EEEEEEECCSSSEEEEE
T ss_pred ecCcEeeeCCCeEEEEE
Confidence 33567999999999985
No 191
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=61.75 E-value=2 Score=42.50 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=18.5
Q ss_pred HHHhCCCcCCeEecCCCceEEeC
Q 005401 676 EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 676 ~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
-..++|.....||+|+||.||+|
T Consensus 44 ~~~~~~~~~~~lg~G~~g~Vy~~ 66 (343)
T 1luf_A 44 YPRNNIEYVRDIGEGAFGRVFQA 66 (343)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEE
T ss_pred ecHHHCeeeeeeeecCCeeEEEE
Confidence 34566677788999999999985
No 192
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=61.24 E-value=1.8 Score=43.31 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=16.4
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
++|.....||+|+||.||+|
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~ 73 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLV 73 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEE
T ss_pred cceEEEEEeccCCCEEEEEE
Confidence 45666788999999999974
No 193
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=61.24 E-value=1.5 Score=44.36 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=19.9
Q ss_pred HHHhCCCcCCeEecCCCceEEeC
Q 005401 676 EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 676 ~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
..++.|.....||+|+||+||+|
T Consensus 51 ~~~~~y~~~~~lG~G~~g~V~~~ 73 (382)
T 2vx3_A 51 KWMDRYEIDSLIGKGSFGQVVKA 73 (382)
T ss_dssp EETTTEEEEEEEEEETTEEEEEE
T ss_pred EeeeeEEEEEEEeecCCEEEEEE
Confidence 56677888889999999999985
No 194
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=61.13 E-value=2.2 Score=43.86 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=18.9
Q ss_pred HHHhCCCcCCeEecCCCceEEeC
Q 005401 676 EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 676 ~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
...+.|.-...||+|+||+||+|
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a 154 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLA 154 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEE
T ss_pred hhhccEEEEeEEeeCCCeEEEEE
Confidence 34566777788999999999985
No 195
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=58.55 E-value=2.1 Score=42.41 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=16.4
Q ss_pred HhCCCcCCeEecCCCceEEeC
Q 005401 678 ADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VYkg 698 (698)
.+.|.....||+|+||.||+|
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~ 70 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKM 70 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEE
T ss_pred hhheeEeeEecccCCEEEEEE
Confidence 344555677999999999985
No 196
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=58.34 E-value=2.2 Score=43.18 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=15.7
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.-...||+|+||.||+|
T Consensus 69 ~~y~i~~~LG~G~~g~Vy~a 88 (382)
T 3tt0_A 69 DRLVLGKPLGEGAFGQVVLA 88 (382)
T ss_dssp GGEEEEEEEEECSSEEEEEE
T ss_pred hheEeeeEEecCCCeEEEEE
Confidence 34455677999999999975
No 197
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=57.42 E-value=2.2 Score=43.32 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=16.3
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.....||+|+||.||+|
T Consensus 52 ~~y~~~~~LG~G~fG~V~~~ 71 (396)
T 4dc2_A 52 QDFDLLRVIGRGSYAKVLLV 71 (396)
T ss_dssp GGEEEEEEEEECSSEEEEEE
T ss_pred hHcEEEEEEeeCCCeEEEEE
Confidence 34666778999999999974
No 198
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=57.39 E-value=2.3 Score=42.13 Aligned_cols=21 Identities=33% Similarity=0.484 Sum_probs=17.2
Q ss_pred HhCCCcCCeEecCCCceEEeC
Q 005401 678 ADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VYkg 698 (698)
.++|.-...||+|+||.||+|
T Consensus 44 ~~~y~~~~~lG~G~~g~V~~~ 64 (344)
T 1rjb_A 44 RENLEFGKVLGSGAFGKVMNA 64 (344)
T ss_dssp GGGEEEEEEEEECSSEEEEEE
T ss_pred HHHceeeeeecCCCCceeEEe
Confidence 455666778999999999985
No 199
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=57.01 E-value=2.1 Score=43.44 Aligned_cols=20 Identities=30% Similarity=0.217 Sum_probs=16.5
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.....||+|+||.||+|
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~ 75 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQV 75 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEE
Confidence 34666788999999999985
No 200
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=56.80 E-value=2.2 Score=41.89 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=15.2
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005401 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|.....||+|+||.||+|
T Consensus 44 ~y~~~~~lg~G~~g~Vy~~ 62 (320)
T 3a99_A 44 QYQVGPLLGSGGFGSVYSG 62 (320)
T ss_dssp TEEEEEECSSSSSCEEEEE
T ss_pred ceEEEEEEeeCCCeEEEEE
Confidence 3445567999999999985
No 201
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=56.71 E-value=2.3 Score=43.73 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=14.8
Q ss_pred CCcCCeEecCCCceEEeC
Q 005401 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.....||+|+||.||+|
T Consensus 56 y~~~~~lG~G~fg~Vy~~ 73 (420)
T 1j1b_A 56 YTDTKVIGNGSFGVVYQA 73 (420)
T ss_dssp EEEEEEEEECSSEEEEEE
T ss_pred EEeeeEEeeCCCEEEEEE
Confidence 444678999999999985
No 202
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=56.68 E-value=2.5 Score=43.93 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=15.8
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.-...||+|+||.||+|
T Consensus 188 ~~~~~~~~lG~G~fg~V~~~ 207 (454)
T 1qcf_A 188 ESLKLEKKLGAGQFGEVWMA 207 (454)
T ss_dssp GGEEEEEEEECCSSEEEEEE
T ss_pred HHeEEEEEcccCCceEEEEE
Confidence 34455567999999999986
No 203
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=56.44 E-value=2.3 Score=43.81 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=16.5
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
..|.....||+|+||.||+|
T Consensus 97 ~ry~~~~~LG~G~fg~V~~a 116 (429)
T 3kvw_A 97 YRYEVLKVIGKGSFGQVVKA 116 (429)
T ss_dssp TTEEEEEEEEESSSEEEEEE
T ss_pred CcEEEEEEcccCccEEEEEE
Confidence 34666778999999999985
No 204
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=54.90 E-value=2.6 Score=42.33 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=15.1
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005401 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|.....||+|+||.||+|
T Consensus 43 ~y~~~~~lG~G~~g~Vy~~ 61 (371)
T 4exu_A 43 TYVSPTHVGSGAYGSVCSA 61 (371)
T ss_dssp TEEEEEEEEECSSEEEEEE
T ss_pred cEEEEeEEecCCCeEEEEE
Confidence 3444567999999999985
No 205
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=54.42 E-value=2.2 Score=41.82 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=14.2
Q ss_pred CCcCCeEecCCCceEEeC
Q 005401 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.....||+|+||.||+|
T Consensus 47 ~~~~~~lg~G~~g~V~~a 64 (321)
T 2c30_A 47 LDSYVKIGEGSTGIVCLA 64 (321)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred hhccEEeccCCCeEEEEE
Confidence 334457999999999985
No 206
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=54.27 E-value=1.9 Score=43.47 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=17.8
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005401 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
.++.|.....||+|+||.||+|
T Consensus 71 ~~~~y~~~~~lG~G~~g~V~~a 92 (377)
T 3byv_A 71 RPRTLVRGTVLGQEDPYAYLEA 92 (377)
T ss_dssp CCEEEEEEEEEEEETTEEEEEE
T ss_pred CCceEEEcceeecCCCEEEEEE
Confidence 3455666788999999999985
No 207
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=53.78 E-value=2.2 Score=42.85 Aligned_cols=22 Identities=14% Similarity=-0.157 Sum_probs=17.6
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005401 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
....|.....||+|+||.||+|
T Consensus 60 ~~~~y~~~~~lG~G~~g~V~~~ 81 (371)
T 3q60_A 60 GERKLKLVEPLRVGDRSVVFLV 81 (371)
T ss_dssp CEEEEEEEEEEEECSSEEEEEE
T ss_pred CceeeeeeeeccCCCCEEEEEE
Confidence 3444666788999999999985
No 208
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=53.10 E-value=2.5 Score=42.58 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=15.5
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005401 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|.-...||+|+||.||+|
T Consensus 115 ~~~~~~~lG~G~~g~V~~~ 133 (377)
T 3cbl_A 115 DLVLGEQIGRGNFGEVFSG 133 (377)
T ss_dssp GEEEEEEEEEETTEEEEEE
T ss_pred HeEEeeEeccCCCCeEEEE
Confidence 4455677999999999986
No 209
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=52.69 E-value=3.1 Score=41.38 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=14.7
Q ss_pred CCcCCeEecCCCceEEeC
Q 005401 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.....||+|+||.||+|
T Consensus 43 y~~~~~lG~G~~g~V~~~ 60 (350)
T 1rdq_E 43 FDRIKTLGTGSFGRVMLV 60 (350)
T ss_dssp EEEEEEEEECSSCEEEEE
T ss_pred CEEEEEeecCcCcEEEEE
Confidence 445567999999999974
No 210
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=51.57 E-value=2.4 Score=42.69 Aligned_cols=17 Identities=18% Similarity=0.499 Sum_probs=9.2
Q ss_pred CcCCeEecCCCceEEeC
Q 005401 682 KEENLIGSGASGKSQEG 698 (698)
Q Consensus 682 ~~~~~iG~gg~g~VYkg 698 (698)
.....||+|+||.||+|
T Consensus 92 ~~~~~lG~G~~g~Vy~a 108 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKC 108 (373)
T ss_dssp EEEEECC-----CEEEE
T ss_pred ecceEEecCcCEEEEEE
Confidence 44567999999999985
No 211
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=51.55 E-value=3.1 Score=43.20 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=9.7
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.....||+|+||+||+|
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~ 72 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEA 72 (458)
T ss_dssp TTEEECCC-------CEEEE
T ss_pred CCeEEeeEeeecCCeEEEEE
Confidence 45666788999999999985
No 212
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=51.50 E-value=2.8 Score=43.43 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=16.7
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.....||+|+||.||+|
T Consensus 148 ~~y~~~~~lG~G~~g~V~~~ 167 (446)
T 4ejn_A 148 NEFEYLKLLGKGTFGKVILV 167 (446)
T ss_dssp GGEEEEEEEEEETTEEEEEE
T ss_pred HHcEEeEEEeeCcCEEEEEE
Confidence 45667788999999999974
No 213
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=51.23 E-value=3.4 Score=42.84 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=14.6
Q ss_pred CCcCCeEecCCCceEEeC
Q 005401 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.-...||+|+||.||+|
T Consensus 186 ~~~~~~lG~G~fg~Vy~~ 203 (452)
T 1fmk_A 186 LRLEVKLGQGCFGEVWMG 203 (452)
T ss_dssp EEEEEEEEECSSCEEEEE
T ss_pred ceeeeeecCCCCeEEEEE
Confidence 444567999999999986
No 214
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=50.96 E-value=3.5 Score=43.85 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=16.7
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|...+.||+|+||.||+|
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a 204 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFAC 204 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEE
Confidence 45666788999999999974
No 215
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=50.81 E-value=3.1 Score=42.17 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=16.2
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.-...||+|+||.||+|
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~ 70 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRC 70 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEE
T ss_pred cceEEEEEEecCCCEEEEEE
Confidence 44566678999999999985
No 216
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=50.79 E-value=4.7 Score=37.97 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=13.7
Q ss_pred cCCeEecCCCceEEeC
Q 005401 683 EENLIGSGASGKSQEG 698 (698)
Q Consensus 683 ~~~~iG~gg~g~VYkg 698 (698)
-...||+|+||.||+|
T Consensus 51 i~~~ig~G~~g~Vy~a 66 (258)
T 1zth_A 51 MGGVISTGKEANVFYA 66 (258)
T ss_dssp EEEEEEECSSEEEEEE
T ss_pred hCCEEeecceEEEEEE
Confidence 4567999999999985
No 217
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=50.43 E-value=2.6 Score=41.63 Aligned_cols=18 Identities=22% Similarity=0.267 Sum_probs=14.3
Q ss_pred CCcCCeEecCCCceEEeC
Q 005401 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.....||+|+||.||+|
T Consensus 43 y~~~~~lg~G~~g~Vy~~ 60 (335)
T 2owb_A 43 YVRGRFLGKGGFAKCFEI 60 (335)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeeCCCeEEEEE
Confidence 334567999999999984
No 218
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=50.39 E-value=2.7 Score=41.88 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=14.5
Q ss_pred CCcCCeEecCCCceEEeC
Q 005401 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.-...||+|+||.||+|
T Consensus 44 y~~~~~lg~G~~g~Vy~~ 61 (352)
T 2jii_A 44 WKLKSFQTRDNQGILYEA 61 (352)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred EEEEEEecCCCCeEEEEE
Confidence 344567999999999985
No 219
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=50.08 E-value=3.1 Score=44.63 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=15.8
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.-...||+|+||.||+|
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~ 176 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRV 176 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEE
T ss_pred cccEEEEEEeeccCeEEEEE
Confidence 34555667999999999985
No 220
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=49.91 E-value=3.1 Score=44.49 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=17.3
Q ss_pred HhCCCcCCeEecCCCceEEeC
Q 005401 678 ADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VYkg 698 (698)
.+.|.....||+|+||.||+|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a 203 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCAC 203 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEE
Confidence 345777788999999999975
No 221
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=49.61 E-value=3.8 Score=40.99 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.5
Q ss_pred HHHhCCCcCCeEecCCCceEEeC
Q 005401 676 EIADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 676 ~aT~~f~~~~~iG~gg~g~VYkg 698 (698)
...+.|.....||+|+||.||+|
T Consensus 91 ~~~~~y~~~~~lg~G~~g~Vy~a 113 (365)
T 2y7j_A 91 EFYQKYDPKDVIGRGVSSVVRRC 113 (365)
T ss_dssp HHHHHEEEEEEEEECSSEEEEEE
T ss_pred hhhhhcccceEEecCCCEEEEEE
Confidence 45667888889999999999985
No 222
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=49.60 E-value=3.8 Score=42.67 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=17.0
Q ss_pred HhCCCcCCeEecCCCceEEeC
Q 005401 678 ADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 678 T~~f~~~~~iG~gg~g~VYkg 698 (698)
.+.|.....||+|+||+||+|
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a 81 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAA 81 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEE
T ss_pred cCCeEEEEEeecCCCeEEEEE
Confidence 455666778999999999975
No 223
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=49.50 E-value=4 Score=44.44 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=12.9
Q ss_pred CCeEecCCCceEEeC
Q 005401 684 ENLIGSGASGKSQEG 698 (698)
Q Consensus 684 ~~~iG~gg~g~VYkg 698 (698)
++.||+|+||.||+|
T Consensus 374 ~~~LG~G~fG~Vy~~ 388 (635)
T 4fl3_A 374 DKELGSGNFGTVKKG 388 (635)
T ss_dssp EEEEEECSSEEEEEE
T ss_pred CCEeccCCCEEEEEE
Confidence 347999999999985
No 224
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=49.38 E-value=7 Score=41.54 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=7.2
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005401 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
..-..+.||+|+||.||||
T Consensus 337 ~~~~~~~LG~G~fg~Vy~~ 355 (540)
T 3en9_A 337 RKIPEHLIGKGAEADIKRD 355 (540)
T ss_dssp -----------CCEEEEEE
T ss_pred cCCCCCEEeeCCCEEEEEE
Confidence 3345678999999999975
No 225
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=49.34 E-value=3.9 Score=39.22 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=16.9
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005401 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
....+.-...||+|+||.||+|
T Consensus 88 ~~~~~~~~~~iG~G~~g~Vy~~ 109 (282)
T 1zar_A 88 SGKVDAIGKLMGEGKESAVFNC 109 (282)
T ss_dssp TTSCSEEEEEEEECSSEEEEEE
T ss_pred CCeEEEecCEeccCCCceEEEE
Confidence 3344555688999999999985
No 226
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=49.00 E-value=3.7 Score=42.56 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=15.4
Q ss_pred CCCcCCeEecCCCceEEeC
Q 005401 680 CLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 680 ~f~~~~~iG~gg~g~VYkg 698 (698)
.|.-...||+|+||.||+|
T Consensus 194 ~~~~~~~lG~G~fg~V~~~ 212 (450)
T 1k9a_A 194 ELKLLQTIGKGEFGDVMLG 212 (450)
T ss_dssp GEEEEEEEEECSSEEEEEE
T ss_pred HeEEEeeecCcCCeeEEEE
Confidence 3455567999999999986
No 227
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=47.65 E-value=3.8 Score=40.41 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=17.5
Q ss_pred HHhCCCcCCeEecCCCceEEeC
Q 005401 677 IADCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 677 aT~~f~~~~~iG~gg~g~VYkg 698 (698)
..+.|.-...||+|+||.||+|
T Consensus 40 ~~~~y~~~~~lg~G~~g~Vy~~ 61 (342)
T 1b6c_B 40 IARTIVLQESIGKGRFGEVWRG 61 (342)
T ss_dssp HHHHCEEEEEEEEETTEEEEEE
T ss_pred ccccEEEEeeecCCCCcEEEEE
Confidence 3445666778999999999985
No 228
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=46.19 E-value=3.4 Score=43.44 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=14.8
Q ss_pred CCcCCeEecCCCceEEeC
Q 005401 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.....||+|+||.||+|
T Consensus 222 ~~~~~~lG~G~fg~Vy~~ 239 (495)
T 1opk_A 222 ITMKHKLGGGQYGEVYEG 239 (495)
T ss_dssp EEEEEESGGGTTSSEEEE
T ss_pred ceeeeEecCCCCeEEEEE
Confidence 444567999999999986
No 229
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=45.29 E-value=4.8 Score=44.01 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=16.2
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.-...||+|+||.||+|
T Consensus 390 ~~y~i~~~LG~G~fG~Vy~a 409 (656)
T 2j0j_A 390 ERIELGRCIGEGQFGDVHQG 409 (656)
T ss_dssp GGEEEEEEEECCSSCCEEEE
T ss_pred ccEEEeeEEeeCCCEEEEEE
Confidence 44555678999999999985
No 230
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=45.07 E-value=4.6 Score=42.93 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=14.5
Q ss_pred CCcCCeEecCCCceEEeC
Q 005401 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
|.-...||+|+||.||+|
T Consensus 269 ~~~~~~lG~G~fg~Vy~~ 286 (535)
T 2h8h_A 269 LRLEVKLGQGCFGEVWMG 286 (535)
T ss_dssp EEEEEEEEECSSEEEEEE
T ss_pred hhhheecccCCCeEEEEE
Confidence 344567999999999986
No 231
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=44.49 E-value=4.3 Score=44.58 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=16.6
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
++|.....||+|+||.||+|
T Consensus 341 ~~f~~~~~LG~G~fG~V~~~ 360 (674)
T 3pfq_A 341 TDFNFLMVLGKGSFGKVMLS 360 (674)
T ss_dssp TTEEEEEESSBTTTBCEEEE
T ss_pred cceEEEEEEccCCCEEEEEE
Confidence 45666778999999999975
No 232
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=43.89 E-value=5.1 Score=39.19 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=13.3
Q ss_pred cCCeEecCCCceEEeC
Q 005401 683 EENLIGSGASGKSQEG 698 (698)
Q Consensus 683 ~~~~iG~gg~g~VYkg 698 (698)
-...||+|+||.||+|
T Consensus 45 ~~~~lg~G~~g~V~~~ 60 (326)
T 2w1i_A 45 FLQQLGKGNFGSVEMC 60 (326)
T ss_dssp EEEEEECCSSEEEEEE
T ss_pred eeeeeccCCCeEEEEE
Confidence 3456999999999975
No 233
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=43.39 E-value=7.3 Score=42.18 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=11.9
Q ss_pred eEecCCCceEEeC
Q 005401 686 LIGSGASGKSQEG 698 (698)
Q Consensus 686 ~iG~gg~g~VYkg 698 (698)
.||+|+||.||+|
T Consensus 343 ~LG~G~fG~Vy~~ 355 (613)
T 2ozo_A 343 ELGCGNFGSVRQG 355 (613)
T ss_dssp EEEECSSSEEEEE
T ss_pred EEecCCCcEEEEE
Confidence 6999999999985
No 234
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=43.11 E-value=6.2 Score=40.03 Aligned_cols=14 Identities=29% Similarity=0.499 Sum_probs=12.5
Q ss_pred CeEecCCCceEEeC
Q 005401 685 NLIGSGASGKSQEG 698 (698)
Q Consensus 685 ~~iG~gg~g~VYkg 698 (698)
.+||+|+||+||+|
T Consensus 68 ~~LG~G~~g~V~~~ 81 (400)
T 1nxk_A 68 QVLGLGINGKVLQI 81 (400)
T ss_dssp EEEEEETTEEEEEE
T ss_pred ceeeeccCeEEEEE
Confidence 57999999999975
No 235
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=36.33 E-value=11 Score=37.93 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=15.0
Q ss_pred CCcCCeEecCCCceEEeC
Q 005401 681 LKEENLIGSGASGKSQEG 698 (698)
Q Consensus 681 f~~~~~iG~gg~g~VYkg 698 (698)
+.-...||+|+||.||+|
T Consensus 97 Y~I~~~IG~Gk~a~VY~a 114 (397)
T 4gyi_A 97 YSVGSRIGVGKESDIMIV 114 (397)
T ss_dssp SEEEEEEEECSSEEEEEE
T ss_pred EEecCEeeeCCceEEEEE
Confidence 445678999999999985
No 236
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=36.12 E-value=25 Score=24.66 Aligned_cols=9 Identities=22% Similarity=0.708 Sum_probs=3.5
Q ss_pred HHHHhhhee
Q 005401 639 VVGVIWFYV 647 (698)
Q Consensus 639 ~~~~~~~~~ 647 (698)
.++..|+|.
T Consensus 30 li~gcwcyl 38 (90)
T 1zza_A 30 LILGCWCYL 38 (90)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHHH
Confidence 333344443
No 237
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=35.14 E-value=7.2 Score=42.88 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=16.0
Q ss_pred hCCCcCCeEecCCCceEEeC
Q 005401 679 DCLKEENLIGSGASGKSQEG 698 (698)
Q Consensus 679 ~~f~~~~~iG~gg~g~VYkg 698 (698)
+.|.-...||+||||.||+|
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a 99 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLA 99 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEE
Confidence 34555678999999999985
Done!