BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005402
(698 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
pdb|2ZB2|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
Length = 849
Score = 540 bits (1390), Expect = e-153, Method: Compositional matrix adjust.
Identities = 316/756 (41%), Positives = 431/756 (57%), Gaps = 69/756 (9%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NLGL A EA+ +LG +E + E D +CFLDS
Sbjct: 90 LEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDS 149
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY+YG+F Q+I Q E A+DWL GNPWE R + PV FYGK+
Sbjct: 150 MATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKV 209
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
+ G + WI + + A+ YD P+PGY T +RLWS P+ DF+L FN GD+ +
Sbjct: 210 EHTNTG-TKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSARAPN-DFNLRDFNVGDYIQ 267
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRS-----GANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ GA
Sbjct: 268 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAGT 327
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEAL 295
++ FP++VA+Q+NDTHP L IPEL+RI +D++ L W +AW +TQ+T AYTNHTVLPEAL
Sbjct: 328 VFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEAL 387
Query: 296 EKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLE----------KRLKETR 345
E+W +L++KLLPRH+EII I+++ + IV+ + D D L KR+
Sbjct: 388 ERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALF-PKDVDRLRRMSLIEEEGSKRINMAH 446
Query: 346 IL----ENVDLPATFADLFVKTK---------------ESTDVVPDDELENCDEEGGPVD 386
+ V+ A VKTK ++ + P L C+ +
Sbjct: 447 LCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELI 506
Query: 387 EE---------------LESAQEDGVLEEESTDV--------VSFIKEKTGYSVSPDAMF 423
E L S D V E V F++ + ++P +MF
Sbjct: 507 AEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMF 566
Query: 424 DIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRI 483
D+QVKRIHEYKRQL+N L ++ Y ++K+ + K FVPR I GGKA Y AK I
Sbjct: 567 DVQVKRIHEYKRQLLNCLHVITMYNRIKK----DPKKLFVPRTVIIGGKAAPGYHMAKMI 622
Query: 484 VKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNM 543
+K IT V VN+DP +G LKVIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NM
Sbjct: 623 IKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNM 682
Query: 544 KFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDA--RFE 601
KF +NG + IGT+DGANVE+ +E GEEN F+FG R ++A L K+ E K +A +
Sbjct: 683 KFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELK 742
Query: 602 EVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKR 661
V + +G F D + N F D F V D+ +Y++CQ+KV + Y + K
Sbjct: 743 LVIDQIDNGFFSPKQPDLFKDII--NMLFYH-DRFKVFADYEAYVKCQDKVSQLYMNPKA 799
Query: 662 WTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 697
W M + N A S KFSSDRTI+EYA++IWN+ P +L
Sbjct: 800 WNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDL 835
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1L5Q|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5Q|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5R|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5R|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5S|A Chain A, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L5S|B Chain B, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|A Chain A, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|B Chain B, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
Length = 847
Score = 540 bits (1390), Expect = e-153, Method: Compositional matrix adjust.
Identities = 316/756 (41%), Positives = 431/756 (57%), Gaps = 69/756 (9%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NLGL A EA+ +LG +E + E D +CFLDS
Sbjct: 88 LEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDS 147
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY+YG+F Q+I Q E A+DWL GNPWE R + PV FYGK+
Sbjct: 148 MATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKV 207
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
+ G + WI + + A+ YD P+PGY T +RLWS P+ DF+L FN GD+ +
Sbjct: 208 EHTNTG-TKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSARAPN-DFNLRDFNVGDYIQ 265
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRS-----GANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ GA
Sbjct: 266 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAGT 325
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEAL 295
++ FP++VA+Q+NDTHP L IPEL+RI +D++ L W +AW +TQ+T AYTNHTVLPEAL
Sbjct: 326 VFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEAL 385
Query: 296 EKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLE----------KRLKETR 345
E+W +L++KLLPRH+EII I+++ + IV+ + D D L KR+
Sbjct: 386 ERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALF-PKDVDRLRRMSLIEEEGSKRINMAH 444
Query: 346 IL----ENVDLPATFADLFVKTK---------------ESTDVVPDDELENCDEEGGPVD 386
+ V+ A VKTK ++ + P L C+ +
Sbjct: 445 LCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELI 504
Query: 387 EE---------------LESAQEDGVLEEESTDV--------VSFIKEKTGYSVSPDAMF 423
E L S D V E V F++ + ++P +MF
Sbjct: 505 AEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMF 564
Query: 424 DIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRI 483
D+QVKRIHEYKRQL+N L ++ Y ++K+ + K FVPR I GGKA Y AK I
Sbjct: 565 DVQVKRIHEYKRQLLNCLHVITMYNRIKK----DPKKLFVPRTVIIGGKAAPGYHMAKMI 620
Query: 484 VKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNM 543
+K IT V VN+DP +G LKVIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NM
Sbjct: 621 IKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNM 680
Query: 544 KFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDA--RFE 601
KF +NG + IGT+DGANVE+ +E GEEN F+FG R ++A L K+ E K +A +
Sbjct: 681 KFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELK 740
Query: 602 EVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKR 661
V + +G F D + N F D F V D+ +Y++CQ+KV + Y + K
Sbjct: 741 LVIDQIDNGFFSPKQPDLFKDII--NMLFYH-DRFKVFADYEAYVKCQDKVSQLYMNPKA 797
Query: 662 WTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 697
W M + N A S KFSSDRTI+EYA++IWN+ P +L
Sbjct: 798 WNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDL 833
>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex
Length = 847
Score = 540 bits (1390), Expect = e-153, Method: Compositional matrix adjust.
Identities = 316/756 (41%), Positives = 431/756 (57%), Gaps = 69/756 (9%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NLGL A EA+ +LG +E + E D +CFLDS
Sbjct: 88 LEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDS 147
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY+YG+F Q+I Q E A+DWL GNPWE R + PV FYGK+
Sbjct: 148 MATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKV 207
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
+ G + WI + + A+ YD P+PGY T +RLWS P+ DF+L FN GD+ +
Sbjct: 208 EHTNTG-TKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSARAPN-DFNLRDFNVGDYIQ 265
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRS-----GANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ GA
Sbjct: 266 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAGT 325
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEAL 295
++ FP++VA+Q+NDTHP L IPEL+RI +D++ L W +AW +TQ+T AYTNHTVLPEAL
Sbjct: 326 VFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEAL 385
Query: 296 EKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLE----------KRLKETR 345
E+W +L++KLLPRH+EII I+++ + IV+ + D D L KR+
Sbjct: 386 ERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALF-PKDVDRLRRMSLIEEEGSKRINMAH 444
Query: 346 IL----ENVDLPATFADLFVKTK---------------ESTDVVPDDELENCDEEGGPVD 386
+ V+ A VKTK ++ + P L C+ +
Sbjct: 445 LCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELI 504
Query: 387 EE---------------LESAQEDGVLEEESTDV--------VSFIKEKTGYSVSPDAMF 423
E L S D V E V F++ + ++P +MF
Sbjct: 505 AEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMF 564
Query: 424 DIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRI 483
D+QVKRIHEYKRQL+N L ++ Y ++K+ + K FVPR I GGKA Y AK I
Sbjct: 565 DVQVKRIHEYKRQLLNCLHVITMYNRIKK----DPKKLFVPRTVIIGGKAAPGYHMAKMI 620
Query: 484 VKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNM 543
+K IT V VN+DP +G LKVIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NM
Sbjct: 621 IKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNM 680
Query: 544 KFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDA--RFE 601
KF +NG + IGT+DGANVE+ +E GEEN F+FG R ++A L K+ E K +A +
Sbjct: 681 KFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELK 740
Query: 602 EVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKR 661
V + +G F D + N F D F V D+ +Y++CQ+KV + Y + K
Sbjct: 741 LVIDQIDNGFFSPKQPDLFKDII--NMLFYH-DRFKVFADYEAYVKCQDKVSQLYMNPKA 797
Query: 662 WTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 697
W M + N A S KFSSDRTI+EYA++IWN+ P +L
Sbjct: 798 WNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDL 833
>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|2ATI|A Chain A, Glycogen Phosphorylase Inhibitors
pdb|2ATI|B Chain B, Glycogen Phosphorylase Inhibitors
Length = 846
Score = 540 bits (1390), Expect = e-153, Method: Compositional matrix adjust.
Identities = 316/756 (41%), Positives = 431/756 (57%), Gaps = 69/756 (9%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NLGL A EA+ +LG +E + E D +CFLDS
Sbjct: 87 LEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDS 146
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY+YG+F Q+I Q E A+DWL GNPWE R + PV FYGK+
Sbjct: 147 MATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKV 206
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
+ G + WI + + A+ YD P+PGY T +RLWS P+ DF+L FN GD+ +
Sbjct: 207 EHTNTG-TKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSARAPN-DFNLRDFNVGDYIQ 264
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRS-----GANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ GA
Sbjct: 265 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAGT 324
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEAL 295
++ FP++VA+Q+NDTHP L IPEL+RI +D++ L W +AW +TQ+T AYTNHTVLPEAL
Sbjct: 325 VFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEAL 384
Query: 296 EKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLE----------KRLKETR 345
E+W +L++KLLPRH+EII I+++ + IV+ + D D L KR+
Sbjct: 385 ERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALF-PKDVDRLRRMSLIEEEGSKRINMAH 443
Query: 346 IL----ENVDLPATFADLFVKTK---------------ESTDVVPDDELENCDEEGGPVD 386
+ V+ A VKTK ++ + P L C+ +
Sbjct: 444 LCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELI 503
Query: 387 EE---------------LESAQEDGVLEEESTDV--------VSFIKEKTGYSVSPDAMF 423
E L S D V E V F++ + ++P +MF
Sbjct: 504 AEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMF 563
Query: 424 DIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRI 483
D+QVKRIHEYKRQL+N L ++ Y ++K+ + K FVPR I GGKA Y AK I
Sbjct: 564 DVQVKRIHEYKRQLLNCLHVITMYNRIKK----DPKKLFVPRTVIIGGKAAPGYHMAKMI 619
Query: 484 VKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNM 543
+K IT V VN+DP +G LKVIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NM
Sbjct: 620 IKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNM 679
Query: 544 KFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDA--RFE 601
KF +NG + IGT+DGANVE+ +E GEEN F+FG R ++A L K+ E K +A +
Sbjct: 680 KFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELK 739
Query: 602 EVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKR 661
V + +G F D + N F D F V D+ +Y++CQ+KV + Y + K
Sbjct: 740 LVIDQIDNGFFSPKQPDLFKDII--NMLFYH-DRFKVFADYEAYVKCQDKVSQLYMNPKA 796
Query: 662 WTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 697
W M + N A S KFSSDRTI+EYA++IWN+ P +L
Sbjct: 797 WNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDL 832
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 539 bits (1389), Expect = e-153, Method: Compositional matrix adjust.
Identities = 316/756 (41%), Positives = 431/756 (57%), Gaps = 69/756 (9%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NLGL A EA+ +LG +E + E D +CFLDS
Sbjct: 87 LEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDS 146
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY+YG+F Q+I Q E A+DWL GNPWE R + PV FYGK+
Sbjct: 147 MATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKV 206
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
+ G + WI + + A+ YD P+PGY T +RLWS P+ DF+L FN GD+ +
Sbjct: 207 EHTNTG-TKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSARAPN-DFNLRDFNVGDYIQ 264
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRS-----GANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ GA
Sbjct: 265 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAGT 324
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEAL 295
++ FP++VA+Q+NDTHP L IPEL+RI +D++ L W +AW +TQ+T AYTNHTVLPEAL
Sbjct: 325 VFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEAL 384
Query: 296 EKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLE----------KRLKETR 345
E+W +L++KLLPRH+EII I+++ + IV+ + D D L KR+
Sbjct: 385 ERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALF-PKDVDRLRRMSLIEEEGSKRINMAH 443
Query: 346 IL----ENVDLPATFADLFVKTK---------------ESTDVVPDDELENCDEEGGPVD 386
+ V+ A VKTK ++ + P L C+ +
Sbjct: 444 LCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELI 503
Query: 387 EE---------------LESAQEDGVLEEESTDV--------VSFIKEKTGYSVSPDAMF 423
E L S D V E V F++ + ++P +MF
Sbjct: 504 AEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMF 563
Query: 424 DIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRI 483
D+QVKRIHEYKRQL+N L ++ Y ++K+ + K FVPR I GGKA Y AK I
Sbjct: 564 DVQVKRIHEYKRQLLNCLHVITMYNRIKK----DPKKLFVPRTVIIGGKAAPGYHMAKMI 619
Query: 484 VKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNM 543
+K IT V VN+DP +G LKVIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NM
Sbjct: 620 IKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNM 679
Query: 544 KFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDA--RFE 601
KF +NG + IGT+DGANVE+ +E GEEN F+FG R ++A L K+ E K +A +
Sbjct: 680 KFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELK 739
Query: 602 EVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKR 661
V + +G F D + N F D F V D+ +Y++CQ+KV + Y + K
Sbjct: 740 LVIDQIDNGFFSPKQPDLFKDII--NMLFYH-DRFKVFADYEAYVKCQDKVSQLYMNPKA 796
Query: 662 WTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 697
W M + N A S KFSSDRTI+EYA++IWN+ P +L
Sbjct: 797 WNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDL 832
>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDS|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDW|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DDW|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DD1|A Chain A, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
pdb|3DD1|B Chain B, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
Length = 848
Score = 539 bits (1389), Expect = e-153, Method: Compositional matrix adjust.
Identities = 316/756 (41%), Positives = 431/756 (57%), Gaps = 69/756 (9%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NLGL A EA+ +LG +E + E D +CFLDS
Sbjct: 89 LEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDS 148
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY+YG+F Q+I Q E A+DWL GNPWE R + PV FYGK+
Sbjct: 149 MATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKV 208
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
+ G + WI + + A+ YD P+PGY T +RLWS P+ DF+L FN GD+ +
Sbjct: 209 EHTNTG-TKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSARAPN-DFNLRDFNVGDYIQ 266
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRS-----GANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ GA
Sbjct: 267 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAGT 326
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEAL 295
++ FP++VA+Q+NDTHP L IPEL+RI +D++ L W +AW +TQ+T AYTNHTVLPEAL
Sbjct: 327 VFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEAL 386
Query: 296 EKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLE----------KRLKETR 345
E+W +L++KLLPRH+EII I+++ + IV+ + D D L KR+
Sbjct: 387 ERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALF-PKDVDRLRRMSLIEEEGSKRINMAH 445
Query: 346 IL----ENVDLPATFADLFVKTK---------------ESTDVVPDDELENCDEEGGPVD 386
+ V+ A VKTK ++ + P L C+ +
Sbjct: 446 LCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELI 505
Query: 387 EE---------------LESAQEDGVLEEESTDV--------VSFIKEKTGYSVSPDAMF 423
E L S D V E V F++ + ++P +MF
Sbjct: 506 AEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMF 565
Query: 424 DIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRI 483
D+QVKRIHEYKRQL+N L ++ Y ++K+ + K FVPR I GGKA Y AK I
Sbjct: 566 DVQVKRIHEYKRQLLNCLHVITMYNRIKK----DPKKLFVPRTVIIGGKAAPGYHMAKMI 621
Query: 484 VKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNM 543
+K IT V VN+DP +G LKVIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NM
Sbjct: 622 IKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNM 681
Query: 544 KFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDA--RFE 601
KF +NG + IGT+DGANVE+ +E GEEN F+FG R ++A L K+ E K +A +
Sbjct: 682 KFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELK 741
Query: 602 EVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKR 661
V + +G F D + N F D F V D+ +Y++CQ+KV + Y + K
Sbjct: 742 LVIDQIDNGFFSPKQPDLFKDII--NMLFYH-DRFKVFADYEAYVKCQDKVSQLYMNPKA 798
Query: 662 WTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 697
W M + N A S KFSSDRTI+EYA++IWN+ P +L
Sbjct: 799 WNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDL 834
>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
pdb|1XOI|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
Length = 846
Score = 539 bits (1389), Expect = e-153, Method: Compositional matrix adjust.
Identities = 316/756 (41%), Positives = 431/756 (57%), Gaps = 69/756 (9%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NLGL A EA+ +LG +E + E D +CFLDS
Sbjct: 87 LEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDS 146
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY+YG+F Q+I Q E A+DWL GNPWE R + PV FYGK+
Sbjct: 147 MATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKV 206
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
+ G + WI + + A+ YD P+PGY T +RLWS P+ DF+L FN GD+ +
Sbjct: 207 EHTNTG-TKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSARAPN-DFNLRDFNVGDYIQ 264
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRS-----GANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ GA
Sbjct: 265 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAAT 324
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEAL 295
++ FP++VA+Q+NDTHP L IPEL+RI +D++ L W +AW +TQ+T AYTNHTVLPEAL
Sbjct: 325 VFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEAL 384
Query: 296 EKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLE----------KRLKETR 345
E+W +L++KLLPRH+EII I+++ + IV+ + D D L KR+
Sbjct: 385 ERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALF-PKDVDRLRRMSLIEEEGSKRINMAH 443
Query: 346 IL----ENVDLPATFADLFVKTK---------------ESTDVVPDDELENCDEEGGPVD 386
+ V+ A VKTK ++ + P L C+ +
Sbjct: 444 LCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELI 503
Query: 387 EE---------------LESAQEDGVLEEESTDV--------VSFIKEKTGYSVSPDAMF 423
E L S D V E V F++ + ++P +MF
Sbjct: 504 AEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMF 563
Query: 424 DIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRI 483
D+QVKRIHEYKRQL+N L ++ Y ++K+ + K FVPR I GGKA Y AK I
Sbjct: 564 DVQVKRIHEYKRQLLNCLHVITMYNRIKK----DPKKLFVPRTVIIGGKAAPGYHMAKMI 619
Query: 484 VKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNM 543
+K IT V VN+DP +G LKVIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NM
Sbjct: 620 IKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNM 679
Query: 544 KFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDA--RFE 601
KF +NG + IGT+DGANVE+ +E GEEN F+FG R ++A L K+ E K +A +
Sbjct: 680 KFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELK 739
Query: 602 EVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKR 661
V + +G F D + N F D F V D+ +Y++CQ+KV + Y + K
Sbjct: 740 LVIDQIDNGFFSPKQPDLFKDII--NMLFYH-DRFKVFADYEAYVKCQDKVSQLYMNPKA 796
Query: 662 WTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 697
W M + N A S KFSSDRTI+EYA++IWN+ P +L
Sbjct: 797 WNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDL 832
>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEH|B Chain B, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEJ|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEJ|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEM|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
pdb|3CEM|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
Length = 809
Score = 539 bits (1389), Expect = e-153, Method: Compositional matrix adjust.
Identities = 314/753 (41%), Positives = 429/753 (56%), Gaps = 69/753 (9%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NLGL A EA+ +LG +E + E D +CFLDS
Sbjct: 65 LEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDS 124
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY+YG+F Q+I Q E A+DWL GNPWE R + PV FYGK+
Sbjct: 125 MATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKV 184
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
+ G + WI + + A+ YD P+PGY T +RLWS P+ DF+L FN GD+ +
Sbjct: 185 EHTNTG-TKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSARAPN-DFNLRDFNVGDYIQ 242
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRS-----GANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ GA
Sbjct: 243 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAGT 302
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEAL 295
++ FP++VA+Q+NDTHP L IPEL+RI +D++ L W +AW +TQ+T AYTNHTVLPEAL
Sbjct: 303 VFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEAL 362
Query: 296 EKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLE----------KRLKETR 345
E+W +L++KLLPRH+EII I+++ + IV+ + D D L KR+
Sbjct: 363 ERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALF-PKDVDRLRRMSLIEEEGSKRINMAH 421
Query: 346 IL----ENVDLPATFADLFVKTK---------------ESTDVVPDDELENCDEEGGPVD 386
+ V+ A VKTK ++ + P L C+ +
Sbjct: 422 LCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELI 481
Query: 387 EE---------------LESAQEDGVL--------EEESTDVVSFIKEKTGYSVSPDAMF 423
E L S D V +E F++ + ++P +MF
Sbjct: 482 AEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMF 541
Query: 424 DIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRI 483
D+QVKRIHEYKRQL+N L ++ Y ++K+ + K FVPR I GGKA Y AK I
Sbjct: 542 DVQVKRIHEYKRQLLNCLHVITMYNRIKK----DPKKLFVPRTVIIGGKAAPGYHMAKMI 597
Query: 484 VKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNM 543
+K IT V VN+DP +G LKVIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NM
Sbjct: 598 IKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNM 657
Query: 544 KFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDA--RFE 601
KF +NG + IGT+DGANVE+ +E GEEN F+FG R ++A L K+ E K +A +
Sbjct: 658 KFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELK 717
Query: 602 EVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKR 661
V + +G F D + N F D F V D+ +Y++CQ+KV + Y + K
Sbjct: 718 LVIDQIDNGFFSPKQPDLFKDII--NMLFYH-DRFKVFADYEAYVKCQDKVSQLYMNPKA 774
Query: 662 WTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
W M + N A S KFSSDRTI+EYA++IWN+ P
Sbjct: 775 WNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEP 807
>pdb|1Z8D|A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A
With Amp And Glucose
Length = 842
Score = 515 bits (1326), Expect = e-146, Method: Compositional matrix adjust.
Identities = 296/760 (38%), Positives = 418/760 (55%), Gaps = 83/760 (10%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NL L A EA +LG +E + E D +CFLDS
Sbjct: 88 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 147
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I+ Q E A+DWL GNPWE R + + PV FYG +
Sbjct: 148 MATLGLAAYGYGIRYEFGIFNQKISGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGHV 207
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S G + W+ + + A+ YD P+PGY+ +RLWS P+ DF+L FN G + +
Sbjct: 208 EHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPN-DFNLKDFNVGGYIQ 265
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RSGANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 266 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 325
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEAL 295
N++ FP+KVA+Q+NDTHP+L IPEL+RIL+DL+ + W +AW++T RT AYTNHTVLPEAL
Sbjct: 326 NFDAFPDKVAIQLNDTHPSLAIPELMRILVDLERMDWDKAWDVTVRTCAYTNHTVLPEAL 385
Query: 296 EKWS---------------FELMQKLLPR-------------HMEIIE------------ 315
E+W +E+ Q+ L R M ++E
Sbjct: 386 ERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHL 445
Query: 316 -------------MIDEELVHTIVSEYGTADPDLLEKRL-----KETRILENVDLPATFA 357
+ E L TI ++ +P + + + +L N L A
Sbjct: 446 CIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEVIA 505
Query: 358 DLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTGYSV 417
+ + D + D L+ + VD+E V +E ++++ + +
Sbjct: 506 E-----RIGEDFISD--LDQLRKLLSFVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHI 558
Query: 418 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY 477
+P+++FDIQVKRIHEYKRQL+N L ++ Y ++K E FVPR + GGKA Y
Sbjct: 559 NPNSLFDIQVKRIHEYKRQLLNCLHVITLYNRIKR----EPNKFFVPRTVMIGGKAAPGY 614
Query: 478 VQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEA 537
AK I++ +T +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG EA
Sbjct: 615 HMAKMIIRLVTAIGDVVNHDPAVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEA 674
Query: 538 SGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPD 597
SGT NM F +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + + D
Sbjct: 675 SGTGNMXFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDKLDQRGYNAQEYYD 734
Query: 598 ARFEEVKKFVK---SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDE 654
R E+++ ++ SG F D + D F V D+ Y++CQEKV
Sbjct: 735 -RIPELRQVIEQLSSGFFSPKQPDLFKDIV---NMLMHHDRFKVFADYEDYIKCQEKVSA 790
Query: 655 AYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct: 791 LYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 830
>pdb|1ABB|A Chain A, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|B Chain B, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|C Chain C, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|D Chain D, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
Length = 828
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/761 (37%), Positives = 414/761 (54%), Gaps = 85/761 (11%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NL L A EA +LG +E + E D +CFLDS
Sbjct: 78 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 137
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 138 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 197
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S G + W+ + + A+ YD P+PGY+ +RLWS P+ DF+L FN G + +
Sbjct: 198 EHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPN-DFNLKDFNVGGYIQ 255
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RSGANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 256 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 315
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNH------- 288
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNH
Sbjct: 316 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVIPEAL 375
Query: 289 ---------TVLPEALEKWSFELMQKLLPR-------------HMEIIE----------- 315
T+LP L+ +E+ Q+ L R M ++E
Sbjct: 376 ERWPVHLLETLLPRHLQ-IIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAH 434
Query: 316 --------------MIDEELVHTIVSEYGTADPDLLEKRL-----KETRILENVDLPATF 356
+ E L TI ++ +P + + + +L N L
Sbjct: 435 LCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEII 494
Query: 357 ADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTGYS 416
A+ + + + D L+ + VD+E V +E ++++ +
Sbjct: 495 AE-----RIGEEYISD--LDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVH 547
Query: 417 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFAT 476
++P+++FD+QVKRIHEYKRQL+N L ++ Y ++K+ E VPR + GGKA
Sbjct: 548 INPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFVVPRTVMIGGKAAPG 603
Query: 477 YVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGME 536
Y AK I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG E
Sbjct: 604 YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTE 663
Query: 537 ASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVP 596
ASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + +
Sbjct: 664 ASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYY 723
Query: 597 DARFEEVKKFVK---SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 653
D R E+++ ++ SG F D + D F V D+ Y++CQE+V
Sbjct: 724 D-RIPELRQIIEQLSSGFFSPKQPDLFKDIV---NMLMHHDRFKVFADYEEYVKCQERVS 779
Query: 654 EAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct: 780 ALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 820
>pdb|1C8L|A Chain A, Synergistic Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug And Caffeine
pdb|1LWN|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|1LWO|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|3AMV|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
pdb|2GPA|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
Length = 842
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/761 (37%), Positives = 414/761 (54%), Gaps = 85/761 (11%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NL L A EA +LG +E + E D +CFLDS
Sbjct: 87 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 146
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 147 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 206
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S G + W+ + + A+ YD P+PGY+ +RLWS P+ DF+L FN G + +
Sbjct: 207 EHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPN-DFNLKDFNVGGYIQ 264
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RSGANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 265 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 324
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNH------- 288
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNH
Sbjct: 325 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEAL 384
Query: 289 ---------TVLPEALEKWSFELMQKLLP-------------RHMEIIE----------- 315
T+LP L+ +E+ Q+ L R M ++E
Sbjct: 385 ERWPVHLLETLLPRHLQ-IIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAH 443
Query: 316 --------------MIDEELVHTIVSEYGTADPDLLEKRL-----KETRILENVDLPATF 356
+ E L TI ++ +P + + + +L N L
Sbjct: 444 LCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEII 503
Query: 357 ADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTGYS 416
A+ + + + D L+ + VD+E V +E ++++ +
Sbjct: 504 AE-----RIGEEYISD--LDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVH 556
Query: 417 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFAT 476
++P+++FD+QVKRIHEYKRQL+N L ++ Y ++K+ E VPR + GGKA
Sbjct: 557 INPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFVVPRTVMIGGKAAPG 612
Query: 477 YVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGME 536
Y AK I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG E
Sbjct: 613 YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTE 672
Query: 537 ASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVP 596
ASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + +
Sbjct: 673 ASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYY 732
Query: 597 DARFEEVKKFVK---SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 653
D R E+++ ++ SG F D + D F V D+ Y++CQE+V
Sbjct: 733 D-RIPELRQIIEQLSSGFFSPKQPDLFKDIV---NMLMHHDRFKVFADYEEYVKCQERVS 788
Query: 654 EAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct: 789 ALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 829
>pdb|1PYG|A Chain A, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|B Chain B, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|C Chain C, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|D Chain D, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|2AMV|A Chain A, The Structure Of Glycogen Phosphorylase B With An Alkyl-
Dihydropyridine-Dicarboxylic Acid
pdb|1E1Y|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1UZU|A Chain A, Glycogen Phosphorylase B In Complex With Indirubin-5'-
Sulphonate
pdb|1XC7|A Chain A, Binding Of Beta-D-Glucopyranosyl Bismethoxyphosphoramidate
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1XKX|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1XL0|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1XL1|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1Z62|A Chain A, Indirubin-3'-aminooxy-acetate Inhibits Glycogen
Phosphorylase By Binding At The Inhibitor And The
Allosteric Site. Broad Specificities Of The Two Sites
pdb|2F3P|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
N-(Beta-D- Glucopyranosyl)oxamic Acid Complex
pdb|2F3Q|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
METHYL-N-(Beta-D- Glucopyranosyl)oxamate Complex
pdb|2F3S|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
ETHYL-N- (Beta-D-Glucopyranosyl)oxamate Complex
pdb|2F3U|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
N-(Beta-D- Glucopyranosyl)-N'-Cyclopropyl Oxalamide
Complex
pdb|2FET|A Chain A, Synthesis Of C-D-Glycopyranosyl-Hydroquinones
And-Benzoquinones. Inhibition Of Ptp1b. Inhibition Of
And Binding To Glycogen Phosphorylase In The Crystal
pdb|2FF5|A Chain A, Synthesis Of C-D-Glycopyranosyl-Hydroquinones
And-Benzoquinones. Inhibition Of Ptp1b. Inhibition Of
And Binding To Glycogen Phosphorylase In The Crystal
pdb|1AXR|A Chain A, Cooperativity Between Hydrogen-Bonding And Charge-Dipole
Interactions In The Inhibition Of Beta-Glycosidases By
Azolopyridines: Evidence From A Study With Glycogen
Phosphorylase B
pdb|1GPY|A Chain A, Crystallographic Binding Studies On The Allosteric
Inhibitor Glucose- 6-Phosphate To T State Glycogen
Phosphorylase B
pdb|3BD7|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Thymine
pdb|3BD8|A Chain A, Glucogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Cytosine
pdb|3BDA|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Cyanuric Acid
Length = 842
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/761 (37%), Positives = 414/761 (54%), Gaps = 85/761 (11%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NL L A EA +LG +E + E D +CFLDS
Sbjct: 87 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 146
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 147 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 206
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S G + W+ + + A+ YD P+PGY+ +RLWS P+ DF+L FN G + +
Sbjct: 207 EHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPN-DFNLKDFNVGGYIQ 264
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RSGANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 265 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 324
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNH------- 288
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNH
Sbjct: 325 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEAL 384
Query: 289 ---------TVLPEALEKWSFELMQKLLP-------------RHMEIIE----------- 315
T+LP L+ +E+ Q+ L R M ++E
Sbjct: 385 ERWPVHLLETLLPRHLQ-IIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAH 443
Query: 316 --------------MIDEELVHTIVSEYGTADPDLLEKRL-----KETRILENVDLPATF 356
+ E L TI ++ +P + + + +L N L
Sbjct: 444 LCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEII 503
Query: 357 ADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTGYS 416
A+ + + + D L+ + VD+E V +E ++++ +
Sbjct: 504 AE-----RIGEEYISD--LDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVH 556
Query: 417 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFAT 476
++P+++FD+QVKRIHEYKRQL+N L ++ Y ++K+ E VPR + GGKA
Sbjct: 557 INPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFVVPRTVMIGGKAAPG 612
Query: 477 YVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGME 536
Y AK I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG E
Sbjct: 613 YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTE 672
Query: 537 ASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVP 596
ASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + +
Sbjct: 673 ASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYY 732
Query: 597 DARFEEVKKFVK---SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 653
D R E+++ ++ SG F D + D F V D+ Y++CQE+V
Sbjct: 733 D-RIPELRQIIEQLSSGFFSPKQPDLFKDIV---NMLMHHDRFKVFADYEEYVKCQERVS 788
Query: 654 EAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct: 789 ALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 829
>pdb|1GPA|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|B Chain B, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|C Chain C, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|D Chain D, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
Length = 842
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/761 (37%), Positives = 414/761 (54%), Gaps = 85/761 (11%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NL L A EA +LG +E + E D +CFLDS
Sbjct: 87 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 146
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 147 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 206
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S G + W+ + + A+ YD P+PGY+ +RLWS P+ DF+L FN G + +
Sbjct: 207 EHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPN-DFNLKDFNVGGYIQ 264
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RSGANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 265 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 324
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNH------- 288
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNH
Sbjct: 325 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVIPEAL 384
Query: 289 ---------TVLPEALEKWSFELMQKLLP-------------RHMEIIE----------- 315
T+LP L+ +E+ Q+ L R M ++E
Sbjct: 385 ERWPVHLLETLLPRHLQ-IIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAH 443
Query: 316 --------------MIDEELVHTIVSEYGTADPDLLEKRL-----KETRILENVDLPATF 356
+ E L TI ++ +P + + + +L N L
Sbjct: 444 LCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEII 503
Query: 357 ADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTGYS 416
A+ + + + D L+ + VD+E V +E ++++ +
Sbjct: 504 AE-----RIGEEYISD--LDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVH 556
Query: 417 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFAT 476
++P+++FD+QVKRIHEYKRQL+N L ++ Y ++K+ E VPR + GGKA
Sbjct: 557 INPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFVVPRTVMIGGKAAPG 612
Query: 477 YVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGME 536
Y AK I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG E
Sbjct: 613 YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTE 672
Query: 537 ASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVP 596
ASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + +
Sbjct: 673 ASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYY 732
Query: 597 DARFEEVKKFVK---SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 653
D R E+++ ++ SG F D + D F V D+ Y++CQE+V
Sbjct: 733 D-RIPELRQIIEQLSSGFFSPKQPDLFKDIV---NMLMHHDRFKVFADYEEYVKCQERVS 788
Query: 654 EAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct: 789 ALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 829
>pdb|2GM9|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In
Complex With Thienopyrrole
Length = 825
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/761 (37%), Positives = 414/761 (54%), Gaps = 85/761 (11%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NL L A EA +LG +E + E D +CFLDS
Sbjct: 76 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 135
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 136 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 195
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S G + W+ + + A+ YD P+PGY+ +RLWS P+ DF+L FN G + +
Sbjct: 196 EHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPN-DFNLKDFNVGGYIQ 253
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RSGANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 254 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 313
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNH------- 288
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNH
Sbjct: 314 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEAL 373
Query: 289 ---------TVLPEALEKWSFELMQKLLPR-------------HMEIIE----------- 315
T+LP L+ +E+ Q+ L R M ++E
Sbjct: 374 ERWPVHLLETLLPRHLQ-IIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAH 432
Query: 316 --------------MIDEELVHTIVSEYGTADPDLLEKRL-----KETRILENVDLPATF 356
+ E L TI ++ +P + + + +L N L
Sbjct: 433 LCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEII 492
Query: 357 ADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTGYS 416
A+ + + + D L+ + VD+E V +E ++++ +
Sbjct: 493 AE-----RIGEEYISD--LDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVH 545
Query: 417 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFAT 476
++P+++FD+QVKRIHEYKRQL+N L ++ Y ++K+ E VPR + GGKA
Sbjct: 546 INPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFVVPRTVMIGGKAAPG 601
Query: 477 YVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGME 536
Y AK I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG E
Sbjct: 602 YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTE 661
Query: 537 ASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVP 596
ASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + +
Sbjct: 662 ASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYY 721
Query: 597 DARFEEVKKFVK---SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 653
D R E+++ ++ SG F D + D F V D+ Y++CQE+V
Sbjct: 722 D-RIPELRQIIEQLSSGFFSPKQPDLFKDIV---NMLMHHDRFKVFADYEEYVKCQERVS 777
Query: 654 EAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct: 778 ALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 818
>pdb|1C50|A Chain A, Identification And Structural Characterization Of A Novel
Allosteric Binding Site Of Glycogen Phosphorylase B
Length = 830
Score = 492 bits (1266), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/761 (37%), Positives = 414/761 (54%), Gaps = 85/761 (11%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NL L A EA +LG +E + E D +CFLDS
Sbjct: 75 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 134
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 135 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 194
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S G + W+ + + A+ YD P+PGY+ +RLWS P+ DF+L FN G + +
Sbjct: 195 EHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPN-DFNLKDFNVGGYIQ 252
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RSGANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 253 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 312
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNH------- 288
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNH
Sbjct: 313 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVIPEAL 372
Query: 289 ---------TVLPEALEKWSFELMQKLLPR-------------HMEIIE----------- 315
T+LP L+ +E+ Q+ L R M ++E
Sbjct: 373 ERWPVHLLETLLPRHLQ-IIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAH 431
Query: 316 --------------MIDEELVHTIVSEYGTADPDLLEKRL-----KETRILENVDLPATF 356
+ E L TI ++ +P + + + +L N L
Sbjct: 432 LCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEII 491
Query: 357 ADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTGYS 416
A+ + + + D L+ + VD+E V +E ++++ +
Sbjct: 492 AE-----RIGEEYISD--LDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVH 544
Query: 417 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFAT 476
++P+++FD+QVKRIHEYKRQL+N L ++ Y ++K+ E VPR + GGKA
Sbjct: 545 INPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFVVPRTVMIGGKAAPG 600
Query: 477 YVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGME 536
Y AK I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG E
Sbjct: 601 YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTE 660
Query: 537 ASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVP 596
ASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + +
Sbjct: 661 ASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYY 720
Query: 597 DARFEEVKKFVK---SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 653
D R E+++ ++ SG F D + D F V D+ Y++CQE+V
Sbjct: 721 D-RIPELRQIIEQLSSGFFSPKQPDLFKDIV---NMLMHHDRFKVFADYEEYVKCQERVS 776
Query: 654 EAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct: 777 ALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 817
>pdb|7GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|B Chain B, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|C Chain C, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|D Chain D, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|9GPB|A Chain A, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|B Chain B, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|C Chain C, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|D Chain D, The Allosteric Transition Of Glycogen Phosphorylase
pdb|1B4D|A Chain A, Amidocarbamate Inhibitor Of Glycogen Phosphorylase
pdb|1BX3|A Chain A, Effects Of Commonly Used Cryoprotectants On Glycogen
Phosphorylase Activity And Structure
pdb|2PRI|A Chain A, Binding Of 2-Deoxy-Glucose-6-Phosphate To Glycogen
Phosphorylase B
pdb|2PRJ|A Chain A, Binding Of N-Acetyl-Beta-D-Glucopyranosylamine To Glycogen
Phosphorylase B
pdb|2SKC|A Chain A, Pyridoxal Phosphorylase B In Complex With Fluorophosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKD|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKE|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphite,
Glucose And Inosine-5'-monophosphate
pdb|1C8K|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1GFZ|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1GG8|A Chain A, Design Of Inhibitors Of Glycogen Phosphorylase: A Study Of
Alpha-And Beta-C-Glucosides And 1-Thio-Beta-D-Glucose
Compounds
pdb|1FS4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTQ|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTW|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTY|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU7|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU8|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1GGN|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1HLF|A Chain A, Binding Of Glucopyranosylidene-Spiro-Thiohydantoin To
Glycogen Phosphorylase B: Kinetic And Crystallographic
Stud
pdb|1H5U|A Chain A, The 1.76 A Resolution Crystal Structure Of Glycogen
Phosphorylase B Complexed With Glucose And Cp320626, A
Potential Antidiabetic Drug
pdb|1K06|A Chain A, Crystallographic Binding Study Of 100 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1K08|A Chain A, Crystallographic Binding Study Of 10 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1KTI|A Chain A, Binding Of 100 Mm N-Acetyl-N'-Beta-D-Glucopyranosyl Urea
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1P29|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Maltopentaose
pdb|1P2B|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Maltoheptaose
pdb|1P2D|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Beta Cyclodextrin
pdb|1P2G|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Gamma Cyclodextrin
pdb|1P4G|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Azido-Alpha-D-Glucopyranosyl)formamide
pdb|1P4H|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Acetamido-alpha-d-glucopyranosyl) Formamide
pdb|1P4J|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Hydroxy-Beta-D-Glucopyranosyl)formamide
pdb|1WUT|A Chain A, Acyl Ureas As Human Liver Glycogen Phosphorylase
Inhibitors For The Treatment Of Type 2 Diabetes
pdb|1WUY|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogen Phosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WV0|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogen Phosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WV1|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogenphosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WW2|A Chain A, Crystallographic Studies On Two Bioisosteric Analogues,
N-Acetyl-Beta- D-Glucopyranosylamine And
N-Trifluoroacetyl-Beta-D- Glucopyranosylamine, Potent
Inhibitors Of Muscle Glycogen Phosphorylase
pdb|1WW3|A Chain A, Crystallographic Studies On Two Bioisosteric Analogues,
N-Acetyl-Beta- D-Glucopyranosylamine And
N-Trifluoroacetyl-Beta-D- Glucopyranosylamine, Potent
Inhibitors Of Muscle Glycogen Phosphorylase
pdb|2IEG|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEG|B Chain B, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEI|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEI|B Chain B, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|1GPB|A Chain A, Glycogen Phosphorylase B: Description Of The Protein
Structure
pdb|2GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|3GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|4GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|5GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|6GPB|A Chain A, Refined Crystal Structure Of The Phosphorylase-Heptulose
2-Phosphate- Oligosaccharide-Amp Complex
pdb|8GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|2QN7|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-Hydroxybenzoyl-N'-4-Beta- D-Glucopyranosyl Urea
pdb|2QN8|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-nitrobenzoyl-n'-beta-d- Glucopyranosyl Urea
pdb|2QN9|A Chain A, Glycogen Phosphorylase In Complex With
N-4-Aminobenzoyl-N'-Beta-D- Glucopyranosyl Urea
Length = 842
Score = 492 bits (1266), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/761 (37%), Positives = 414/761 (54%), Gaps = 85/761 (11%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NL L A EA +LG +E + E D +CFLDS
Sbjct: 87 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 146
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 147 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 206
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S G + W+ + + A+ YD P+PGY+ +RLWS P+ DF+L FN G + +
Sbjct: 207 EHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPN-DFNLKDFNVGGYIQ 264
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RSGANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 265 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 324
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNH------- 288
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNH
Sbjct: 325 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVIPEAL 384
Query: 289 ---------TVLPEALEKWSFELMQKLLP-------------RHMEIIE----------- 315
T+LP L+ +E+ Q+ L R M ++E
Sbjct: 385 ERWPVHLLETLLPRHLQ-IIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAH 443
Query: 316 --------------MIDEELVHTIVSEYGTADPDLLEKRL-----KETRILENVDLPATF 356
+ E L TI ++ +P + + + +L N L
Sbjct: 444 LCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEII 503
Query: 357 ADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTGYS 416
A+ + + + D L+ + VD+E V +E ++++ +
Sbjct: 504 AE-----RIGEEYISD--LDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVH 556
Query: 417 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFAT 476
++P+++FD+QVKRIHEYKRQL+N L ++ Y ++K+ E VPR + GGKA
Sbjct: 557 INPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFVVPRTVMIGGKAAPG 612
Query: 477 YVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGME 536
Y AK I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG E
Sbjct: 613 YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTE 672
Query: 537 ASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVP 596
ASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + +
Sbjct: 673 ASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYY 732
Query: 597 DARFEEVKKFVK---SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 653
D R E+++ ++ SG F D + D F V D+ Y++CQE+V
Sbjct: 733 D-RIPELRQIIEQLSSGFFSPKQPDLFKDIV---NMLMHHDRFKVFADYEEYVKCQERVS 788
Query: 654 EAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct: 789 ALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 829
>pdb|2GJ4|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In
Complex With Ligand
Length = 824
Score = 492 bits (1266), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/761 (37%), Positives = 414/761 (54%), Gaps = 85/761 (11%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NL L A EA +LG +E + E D +CFLDS
Sbjct: 76 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 135
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 136 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 195
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S G + W+ + + A+ YD P+PGY+ +RLWS P+ DF+L FN G + +
Sbjct: 196 EHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPN-DFNLKDFNVGGYIQ 253
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RSGANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 254 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 313
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNH------- 288
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNH
Sbjct: 314 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEAL 373
Query: 289 ---------TVLPEALEKWSFELMQKLLPR-------------HMEIIE----------- 315
T+LP L+ +E+ Q+ L R M ++E
Sbjct: 374 ERWPVHLLETLLPRHLQ-IIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAH 432
Query: 316 --------------MIDEELVHTIVSEYGTADPDLLEKRL-----KETRILENVDLPATF 356
+ E L TI ++ +P + + + +L N L
Sbjct: 433 LCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEII 492
Query: 357 ADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTGYS 416
A+ + + + D L+ + VD+E V +E ++++ +
Sbjct: 493 AE-----RIGEEYISD--LDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVH 545
Query: 417 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFAT 476
++P+++FD+QVKRIHEYKRQL+N L ++ Y ++K+ E VPR + GGKA
Sbjct: 546 INPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFVVPRTVMIGGKAAPG 601
Query: 477 YVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGME 536
Y AK I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG E
Sbjct: 602 YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTE 661
Query: 537 ASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVP 596
ASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + +
Sbjct: 662 ASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYY 721
Query: 597 DARFEEVKKFVK---SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 653
D R E+++ ++ SG F D + D F V D+ Y++CQE+V
Sbjct: 722 D-RIPELRQIIEQLSSGFFSPKQPDLFKDIV---NMLMHHDRFKVFADYEEYVKCQERVS 777
Query: 654 EAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct: 778 ALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 818
>pdb|2FFR|A Chain A, Crystallographic Studies On
N-Azido-Beta-D-Glucopyranosylamine, An Inhibitor Of
Glycogen Phosphorylase: Comparison With N-Acetyl-Beta-D-
Glucopyranosylamine
Length = 825
Score = 491 bits (1263), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/761 (37%), Positives = 414/761 (54%), Gaps = 85/761 (11%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NL L A EA +LG +E + E D +CFLDS
Sbjct: 76 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 135
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 136 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 195
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S G + W+ + + A+ YD P+PGY+ +RLWS P+ DF+L FN G + +
Sbjct: 196 EHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPN-DFNLKDFNVGGYIQ 253
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RSGANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 254 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPRVT 313
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNH------- 288
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNH
Sbjct: 314 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEAL 373
Query: 289 ---------TVLPEALEKWSFELMQKLLPR-------------HMEIIE----------- 315
T+LP L+ +E+ Q+ L R M ++E
Sbjct: 374 ERWPVHLLETLLPRHLQ-IIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAH 432
Query: 316 --------------MIDEELVHTIVSEYGTADPDLLEKRL-----KETRILENVDLPATF 356
+ E L TI ++ +P + + + +L N L
Sbjct: 433 LCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEII 492
Query: 357 ADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTGYS 416
A+ + + + D L+ + VD+E V +E ++++ +
Sbjct: 493 AE-----RIGEEYISD--LDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVH 545
Query: 417 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFAT 476
++P+++FD+QVKRIHEYKRQL+N L ++ Y ++K+ E VPR + GGKA
Sbjct: 546 INPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFVVPRTVMIGGKAAPG 601
Query: 477 YVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGME 536
Y AK I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG E
Sbjct: 602 YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTE 661
Query: 537 ASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVP 596
ASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + +
Sbjct: 662 ASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYY 721
Query: 597 DARFEEVKKFVK---SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 653
D R E+++ ++ SG F D + D F V D+ Y++CQE+V
Sbjct: 722 D-RIPELRQIIEQLSSGFFSPKQPDLFKDIV---NMLMHHDRFKVFADYEEYVKCQERVS 777
Query: 654 EAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct: 778 ALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 818
>pdb|2PYD|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With Glucose At 100 K
pdb|2PYI|A Chain A, Crystal Structure Of Glycogen Phosphorylase In Complex
With Glucosyl Triazoleacetamide
pdb|3L79|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk1 Complex
pdb|3L7A|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk2 Complex
pdb|3L7B|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk3 Complex
pdb|3L7C|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk4 Complex
pdb|3L7D|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk5 Complex
Length = 843
Score = 490 bits (1262), Expect = e-138, Method: Compositional matrix adjust.
Identities = 288/761 (37%), Positives = 413/761 (54%), Gaps = 85/761 (11%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NL L A EA +LG +E + E D +CFLDS
Sbjct: 88 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 147
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 148 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 207
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S G + W+ + + A+ YD P+PGY+ +RLWS P+ DF+L FN G + +
Sbjct: 208 EHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPN-DFNLKDFNVGGYIQ 265
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RSGANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 266 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 325
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNH------- 288
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNH
Sbjct: 326 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEAL 385
Query: 289 ---------TVLPEALEKWSFELMQKLLPR-------------HMEIIE----------- 315
T+LP L+ +E+ Q+ L R M ++E
Sbjct: 386 ERWPVHLLETLLPRHLQ-IIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAH 444
Query: 316 --------------MIDEELVHTIVSEYGTADPDLLEKRL-----KETRILENVDLPATF 356
+ E L TI ++ +P + + + +L N L
Sbjct: 445 LCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEII 504
Query: 357 ADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTGYS 416
A+ + + + D L+ + VD+E V +E ++++ +
Sbjct: 505 AE-----RIGEEYISD--LDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVH 557
Query: 417 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFAT 476
++P+++FD+QVKRIHEYKRQL+N L ++ Y ++K+ E VPR + GGKA
Sbjct: 558 INPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFVVPRTVMIGGKAAPG 613
Query: 477 YVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGME 536
Y AK I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG E
Sbjct: 614 YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTE 673
Query: 537 ASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVP 596
ASGT NM F +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + +
Sbjct: 674 ASGTGNMXFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYY 733
Query: 597 DARFEEVKKFVK---SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 653
D R E+++ ++ SG F D + D F V D+ Y++CQE+V
Sbjct: 734 D-RIPELRQIIEQLSSGFFSPKQPDLFKDIV---NMLMHHDRFKVFADYEEYVKCQERVS 789
Query: 654 EAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct: 790 ALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 830
>pdb|2G9Q|A Chain A, The Crystal Structure Of The Glycogen Phosphorylase B- 1ab
Complex
pdb|2G9R|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With (3r,
4r,5r)-5-Hydroxymethyl-1-(3-Phenylpropyl)-Piperidine-3,
4-Diol
pdb|2G9U|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With (3r,
4r,5r)-5-Hydroxymethyl-1-(3-Phenylpropyl)-Piperidine-3,
4-Diol And Phosphate
pdb|2G9V|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With (3r, 4r,5r)-5-Hydroxymethylpiperidine-3,4-Diol And
Phosphate
pdb|2OFF|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With A Potent Allosteric Inhibitor
pdb|2QN1|A Chain A, Glycogen Phosphorylase B In Complex With Asiatic Acid
pdb|2QN2|A Chain A, Glycogen Phosphorylase B In Complex With Maslinic Acid
pdb|2QLM|A Chain A, Glycogen Phosphorylase In Complex With Fn67
pdb|2QLN|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-Phenylbenzoyl- N'-Beta-D-Glucopyranosyl Urea
pdb|2QN3|A Chain A, Glycogen Phosphorylase In Complex With
N-4-Chlorobenzoyl-N- Beta-D-Glucopyranosyl Urea
pdb|2QNB|A Chain A, Glycogen Phosphorylase B In Complex With
N-Benzoyl-N'-Beta- D-Glucopyranosyl Urea
pdb|2QRM|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Nitrophenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,
5'-Isoxazoline]
pdb|2QRP|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(2-
Naphthyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-Isoxazoline]
pdb|2QRQ|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Methylphenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-
Isoxazoline]
pdb|2QRG|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Methoxyphenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-
Isoxazoline]
pdb|2QRH|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-
Phenylspiro[1,5-Anhydro-D-Glucitol-1,5'-Isoxazoline]
pdb|3BCR|A Chain A, Glycogen Phosphorylase B In Complex With Azt
pdb|3BCS|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Uracil
pdb|3BCU|A Chain A, Glucogen Phosphorylase Complex With Thymidine
pdb|3BD6|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Ribofuranosyl)
Cyanuric Acid
pdb|3E3L|A Chain A, The R-state Glycogen Phosphorylase
pdb|3E3L|B Chain B, The R-state Glycogen Phosphorylase
pdb|3E3L|C Chain C, The R-state Glycogen Phosphorylase
pdb|3E3L|D Chain D, The R-state Glycogen Phosphorylase
pdb|3CUT|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamide
pdb|3CUU|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamides
pdb|3CUV|A Chain A, Tracking Structure Activity Relationships Of Glycogen
Phosphorylase Inhibitors: Synthesis, Kinetic And
Crystallographic Evaluation Of Analogues Of N-(-D-
Glucopyranosyl)-N'-Oxamides
pdb|3CUW|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamides
pdb|3E3N|A Chain A, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|B Chain B, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|C Chain C, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|D Chain D, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|E Chain E, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|F Chain F, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|G Chain G, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|H Chain H, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3EBO|A Chain A, Glycogen Phosphorylase B/chrysin Complex
pdb|3EBP|A Chain A, Glycogen Phosphorylase B/flavopiridol Complex
pdb|3G2H|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2I|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazole
pdb|3G2J|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2K|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazole
pdb|3G2L|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2N|A Chain A, Crystal Structure Of N-Acylglucosylamine With Glycogen
Phosphorylase
pdb|3MQF|A Chain A, Glycogen Phosphorylase Complexed With
4-Fluorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MRT|A Chain A, Glycogen Phosphorylase Complexed With
4-Pyridinecarboxaldehyde-4- (Beta-D-Glucopyranosyl)
Thiosemicarbazone
pdb|3MRV|A Chain A, Glycogen Phosphorylase Complexed With
3-Hydroxybenzaldehyde-4-(Beta-D- Glucopyranosyl)
Thiosemicarbazone
pdb|3MRX|A Chain A, Glycogen Phosphorylase Complexed With
4-Methoxybenzaldehyde-4-(2,3,4,
6-Tetra-O-Acetyl-Beta-D-Glucopyranosyl)-
Thiosemicarbazone
pdb|3MS2|A Chain A, Glycogen Phosphorylase Complexed With
4-Methylbenzaldehyde-4-(Beta-D- Glucopyranosyl)
Thiosemicarbazone
pdb|3MS4|A Chain A, Glycogen Phosphorylase Complexed With
4-Trifluoromethylbenzaldehyde-4-
(Beta-D-Glucopyranosyl)-Thiosemicarbazone
pdb|3MS7|A Chain A, Glycogen Phosphorylase Complexed With
2-Chlorobenzaldehyde-4-(2,3,4,6-
Tetra-O-Acetyl-Beta-D-Glucopyranosyl) Thiosemicarbazone
pdb|3MT7|A Chain A, Glycogen Phosphorylase Complexed With
4-Bromobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MT8|A Chain A, Glycogen Phosphorylase Complexed With
4-Chlorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MT9|A Chain A, Glycogen Phosphorylase Complexed With
4-Nitrobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTA|A Chain A, Glycogen Phosphorylase Complexed With
3-Bromobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTB|A Chain A, Glycogen Phosphorylase Complexed With
3-Chlorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTD|A Chain A, Glycogen Phosphorylase Complexed With
4-Hydroxybenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MSC|A Chain A, Glycogen Phosphorylase Complexed With
2-Nitrobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3NP7|A Chain A, Glycogen Phosphorylase Complexed With
2,5-Dihydroxy-3-(Beta-D- Glucopyranosyl)-Chlorobenzene
And 2,5-Dihydroxy-4-(Beta-D-
Glucopyranosyl)-Chlorobenzene
pdb|3NP9|A Chain A, Glycogen Phosphorylase Complexed With
3-(Beta-D-Glucopyranosyl)-2-
Hydroxy-5-Methoxy-Chlorobenzene
pdb|3NPA|A Chain A, Glycogen Phosphorylase Complexed With
2,5-Dihydroxy-4-(Beta-D- Glucopyranosyl)-Bromo-Benzene
pdb|3S0J|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With 2,5-
Dihydroxy-4-(Beta-D-Glucopyranosyl)-Chlorobenzene
pdb|3SYM|A Chain A, Glycogen Phosphorylase B In Complex With 3
-C-(Hydroxymethyl)-Beta-D- Glucopyranonucleoside Of
5-Fluorouracil
pdb|3SYR|A Chain A, Glycogen Phosphorylase B In Complex With
Beta-D-Glucopyranonucleoside 5-Fluorouracil
pdb|3T3D|A Chain A, Glycogen Phosphorylase B In Complex With Glcu
pdb|3T3E|A Chain A, Glycogen Phosphorylase B In Complex With Glcclu
pdb|3T3G|A Chain A, Glycogen Phosphorylase B In Complex With Glcbru
pdb|3T3H|A Chain A, Glycogen Phosphorylase B In Complex With Glciu
pdb|3T3I|A Chain A, Glycogen Phosphorylase B In Complex With Glccf3u
Length = 842
Score = 490 bits (1262), Expect = e-138, Method: Compositional matrix adjust.
Identities = 288/761 (37%), Positives = 413/761 (54%), Gaps = 85/761 (11%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NL L A EA +LG +E + E D +CFLDS
Sbjct: 87 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 146
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 147 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 206
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S G + W+ + + A+ YD P+PGY+ +RLWS P+ DF+L FN G + +
Sbjct: 207 EHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPN-DFNLKDFNVGGYIQ 264
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RSGANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 265 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 324
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNH------- 288
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNH
Sbjct: 325 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEAL 384
Query: 289 ---------TVLPEALEKWSFELMQKLLP-------------RHMEIIE----------- 315
T+LP L+ +E+ Q+ L R M ++E
Sbjct: 385 ERWPVHLLETLLPRHLQ-IIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAH 443
Query: 316 --------------MIDEELVHTIVSEYGTADPDLLEKRL-----KETRILENVDLPATF 356
+ E L TI ++ +P + + + +L N L
Sbjct: 444 LCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEII 503
Query: 357 ADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTGYS 416
A+ + + + D L+ + VD+E V +E ++++ +
Sbjct: 504 AE-----RIGEEYISD--LDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVH 556
Query: 417 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFAT 476
++P+++FD+QVKRIHEYKRQL+N L ++ Y ++K+ E VPR + GGKA
Sbjct: 557 INPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFVVPRTVMIGGKAAPG 612
Query: 477 YVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGME 536
Y AK I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG E
Sbjct: 613 YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTE 672
Query: 537 ASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVP 596
ASGT NM F +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + +
Sbjct: 673 ASGTGNMXFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYY 732
Query: 597 DARFEEVKKFVK---SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 653
D R E+++ ++ SG F D + D F V D+ Y++CQE+V
Sbjct: 733 D-RIPELRQIIEQLSSGFFSPKQPDLFKDIV---NMLMHHDRFKVFADYEEYVKCQERVS 788
Query: 654 EAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct: 789 ALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 829
>pdb|1NOI|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|B Chain B, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|C Chain C, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|D Chain D, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOJ|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
State
pdb|1NOK|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
State
Length = 842
Score = 490 bits (1261), Expect = e-138, Method: Compositional matrix adjust.
Identities = 288/761 (37%), Positives = 413/761 (54%), Gaps = 85/761 (11%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NL L A EA +LG +E + E D +CFLDS
Sbjct: 87 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 146
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 147 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 206
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S G + W+ + + A+ YD P+PGY+ +RLWS P+ DF+L FN G + +
Sbjct: 207 EHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPN-DFNLKDFNVGGYIQ 264
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RSGANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 265 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 324
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNH------- 288
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNH
Sbjct: 325 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVIPEAL 384
Query: 289 ---------TVLPEALEKWSFELMQKLLP-------------RHMEIIE----------- 315
T+LP L+ +E+ Q+ L R M ++E
Sbjct: 385 ERWPVHLLETLLPRHLQ-IIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAH 443
Query: 316 --------------MIDEELVHTIVSEYGTADPDLLEKRL-----KETRILENVDLPATF 356
+ E L TI ++ +P + + + +L N L
Sbjct: 444 LCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEII 503
Query: 357 ADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTGYS 416
A+ + + + D L+ + VD+E V +E ++++ +
Sbjct: 504 AE-----RIGEEYISD--LDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVH 556
Query: 417 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFAT 476
++P+++FD+QVKRIHEYKRQL+N L ++ Y ++K+ E VPR + GGK
Sbjct: 557 INPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFVVPRTVMIGGKPAPG 612
Query: 477 YVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGME 536
Y AK I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG E
Sbjct: 613 YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTE 672
Query: 537 ASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVP 596
ASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + +
Sbjct: 673 ASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYY 732
Query: 597 DARFEEVKKFVK---SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 653
D R E+++ ++ SG F D + D F V D+ Y++CQE+V
Sbjct: 733 D-RIPELRQIIEQLSSGFFSPKQPDLFKDIV---NMLMHHDRFKVFADYEEYVKCQERVS 788
Query: 654 EAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct: 789 ALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 829
>pdb|3NC4|A Chain A, The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbazone
Derivatives To Glycogen Phosphorylase: A New Class Of
Inhibitors
Length = 841
Score = 490 bits (1261), Expect = e-138, Method: Compositional matrix adjust.
Identities = 288/761 (37%), Positives = 413/761 (54%), Gaps = 85/761 (11%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NL L A EA +LG +E + E D +CFLDS
Sbjct: 86 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 145
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 146 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 205
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S G + W+ + + A+ YD P+PGY+ +RLWS P+ DF+L FN G + +
Sbjct: 206 EHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPN-DFNLKDFNVGGYIQ 263
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RSGANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 264 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 323
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNH------- 288
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNH
Sbjct: 324 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEAL 383
Query: 289 ---------TVLPEALEKWSFELMQKLLP-------------RHMEIIE----------- 315
T+LP L+ +E+ Q+ L R M ++E
Sbjct: 384 ERWPVHLLETLLPRHLQ-IIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAH 442
Query: 316 --------------MIDEELVHTIVSEYGTADPDLLEKRL-----KETRILENVDLPATF 356
+ E L TI ++ +P + + + +L N L
Sbjct: 443 LCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEII 502
Query: 357 ADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTGYS 416
A+ + + + D L+ + VD+E V +E ++++ +
Sbjct: 503 AE-----RIGEEYISD--LDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVH 555
Query: 417 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFAT 476
++P+++FD+QVKRIHEYKRQL+N L ++ Y ++K+ E VPR + GGKA
Sbjct: 556 INPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFVVPRTVMIGGKAAPG 611
Query: 477 YVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGME 536
Y AK I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG E
Sbjct: 612 YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTE 671
Query: 537 ASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVP 596
ASGT NM F +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + +
Sbjct: 672 ASGTGNMXFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYY 731
Query: 597 DARFEEVKKFVK---SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 653
D R E+++ ++ SG F D + D F V D+ Y++CQE+V
Sbjct: 732 D-RIPELRQIIEQLSSGFFSPKQPDLFKDIV---NMLMHHDRFKVFADYEEYVKCQERVS 787
Query: 654 EAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct: 788 ALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 828
>pdb|1Z6P|A Chain A, Glycogen Phosphorylase Amp Site Inhibitor Complex
pdb|1Z6Q|A Chain A, Glycogen Phosphorylase With Inhibitor In The Amp Site
pdb|1A8I|A Chain A, Spirohydantoin Inhibitor Of Glycogen Phosphorylase
pdb|2GPN|A Chain A, 100 K Structure Of Glycogen Phosphorylase At 2.0 Angstroms
Resolution
pdb|3E3O|A Chain A, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|B Chain B, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|C Chain C, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|D Chain D, Glycogen Phosphorylase R State-Imp Complex
Length = 842
Score = 490 bits (1261), Expect = e-138, Method: Compositional matrix adjust.
Identities = 288/761 (37%), Positives = 413/761 (54%), Gaps = 85/761 (11%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NL L A EA +LG +E + E D +CFLDS
Sbjct: 87 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 146
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 147 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 206
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S G + W+ + + A+ YD P+PGY+ +RLWS P+ DF+L FN G + +
Sbjct: 207 EHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPN-DFNLKDFNVGGYIQ 264
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RSGANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 265 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 324
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNH------- 288
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNH
Sbjct: 325 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVIPEAL 384
Query: 289 ---------TVLPEALEKWSFELMQKLLP-------------RHMEIIE----------- 315
T+LP L+ +E+ Q+ L R M ++E
Sbjct: 385 ERWPVHLLETLLPRHLQ-IIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAH 443
Query: 316 --------------MIDEELVHTIVSEYGTADPDLLEKRL-----KETRILENVDLPATF 356
+ E L TI ++ +P + + + +L N L
Sbjct: 444 LCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEII 503
Query: 357 ADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTGYS 416
A+ + + + D L+ + VD+E V +E ++++ +
Sbjct: 504 AE-----RIGEEYISD--LDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVH 556
Query: 417 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFAT 476
++P+++FD+QVKRIHEYKRQL+N L ++ Y ++K+ E VPR + GGKA
Sbjct: 557 INPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFVVPRTVMIGGKAAPG 612
Query: 477 YVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGME 536
Y AK I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG E
Sbjct: 613 YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTE 672
Query: 537 ASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVP 596
ASGT NM F +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + +
Sbjct: 673 ASGTGNMXFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYY 732
Query: 597 DARFEEVKKFVK---SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 653
D R E+++ ++ SG F D + D F V D+ Y++CQE+V
Sbjct: 733 D-RIPELRQIIEQLSSGFFSPKQPDLFKDIV---NMLMHHDRFKVFADYEEYVKCQERVS 788
Query: 654 EAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct: 789 ALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 829
>pdb|4EJ2|A Chain A, Crystal Structure Of Gpb In Complex With Dk10
pdb|4EKE|A Chain A, Crystal Structure Of Gpb In Complex With Dk11
pdb|4EKY|A Chain A, Crystal Structure Of Gpb In Complex With Dk15
pdb|4EL0|A Chain A, Crystal Structure Of Gpb In Complex With Dk16
pdb|4EL5|A Chain A, Crystal Structure Of Gpb In Complex With Dk12
Length = 825
Score = 490 bits (1261), Expect = e-138, Method: Compositional matrix adjust.
Identities = 288/761 (37%), Positives = 413/761 (54%), Gaps = 85/761 (11%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
+EF GR L N + NL L A EA +LG +E + E D +CFLDS
Sbjct: 76 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 135
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 136 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 195
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S G + W+ + + A+ YD P+PGY+ +RLWS P+ DF+L FN G + +
Sbjct: 196 EHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPN-DFNLKDFNVGGYIQ 253
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RSGANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 254 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 313
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNH------- 288
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNH
Sbjct: 314 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEAL 373
Query: 289 ---------TVLPEALEKWSFELMQKLLPR-------------HMEIIE----------- 315
T+LP L+ +E+ Q+ L R M ++E
Sbjct: 374 ERWPVHLLETLLPRHLQ-IIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAH 432
Query: 316 --------------MIDEELVHTIVSEYGTADPDLLEKRL-----KETRILENVDLPATF 356
+ E L TI ++ +P + + + +L N L
Sbjct: 433 LCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEII 492
Query: 357 ADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTGYS 416
A+ + + + D L+ + VD+E V +E ++++ +
Sbjct: 493 AE-----RIGEEYISD--LDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVH 545
Query: 417 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFAT 476
++P+++FD+QVKRIHEYKRQL+N L ++ Y ++K+ E VPR + GGKA
Sbjct: 546 INPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFVVPRTVMIGGKAAPG 601
Query: 477 YVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGME 536
Y AK I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG E
Sbjct: 602 YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTE 661
Query: 537 ASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVP 596
ASGT NM F +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + +
Sbjct: 662 ASGTGNMXFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYY 721
Query: 597 DARFEEVKKFVK---SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 653
D R E+++ ++ SG F D + D F V D+ Y++CQE+V
Sbjct: 722 D-RIPELRQIIEQLSSGFFSPKQPDLFKDIV---NMLMHHDRFKVFADYEEYVKCQERVS 777
Query: 654 EAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct: 778 ALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 818
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 469 bits (1206), Expect = e-132, Method: Compositional matrix adjust.
Identities = 284/744 (38%), Positives = 411/744 (55%), Gaps = 71/744 (9%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
MEFL GR N + NLG ++L +L +++ +E D +CFLDS
Sbjct: 66 MEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDS 125
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MAT+ A GYGL Y+YGLF+Q Q E +DW PW + V GK+
Sbjct: 126 MATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGKV 185
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
DG+ W I A+D+P+ GY+ LRLW + FDL+ FN GD +
Sbjct: 186 T--KDGR--WEPEFTITGQAWDLPVVGYRNGVAQPLRLWQA-THAHPFDLTKFNDGDFLR 240
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEF 240
A + NAEK+ +LYP D + EGK LRL QQY C+ S+ DI+ R A E
Sbjct: 241 AEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHL---AGRKLHEL 297
Query: 241 PEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSF 300
+ +Q+NDTHPT+ IPEL+R+LID +SW +AW IT +T AYTNHT++PEALE+W
Sbjct: 298 ADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDV 357
Query: 301 ELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKR--LKETRI-LENVDLPATFA 357
+L++ LLPRHM+II I+ T+V + D + K + + ++ + N+ + FA
Sbjct: 358 KLVKGLLPRHMQIINEINTRF-KTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFA 416
Query: 358 --------------DLFVKTKE---------STDVVPDDELENCD-------------EE 381
DLF + + + + P ++ C+ E
Sbjct: 417 VNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEW 476
Query: 382 GGPVDE--ELESAQEDGVLEEESTDV--------VSFIKEKTGYSVSPDAMFDIQVKRIH 431
+D+ LE +D ++ ++ F+K +TG ++P A+FDIQ+KR+H
Sbjct: 477 ANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLH 536
Query: 432 EYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVG 491
EYKRQ +N+L I+ YK+++E +R VPRV +FG KA Y AK I+ I V
Sbjct: 537 EYKRQHLNLLHILALYKEIRENPQADR----VPRVFLFGAKAAPGYYLAKNIIFAINKVA 592
Query: 492 ATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCI 551
+N+DP +GD LKV+F+PDY VS AE LIPA+++S+ ISTAG EASGT NMK A+NG +
Sbjct: 593 DVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGAL 652
Query: 552 LIGTLDGANVEIRQEVGEENFFLFGARAHEI-AGLRKERSEGKFV-PDARFEEVKKFVKS 609
+GTLDGANVEI ++VGEEN F+FG ++ A L K K+ D + V K ++S
Sbjct: 653 TVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKELES 712
Query: 610 GVFG---SYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMS 666
G + + +D+++ S+ G +G D +LV DF +Y+E Q++VD Y DQ+ WTR +
Sbjct: 713 GKYSDGDKHAFDQMLHSI-GKQG---GDPYLVMADFAAYVEAQKQVDVLYRDQEAWTRAA 768
Query: 667 IMNTAGSSKFSSDRTIQEYARDIW 690
I+NTA FSSDR+I++Y IW
Sbjct: 769 ILNTARCGMFSSDRSIRDYQARIW 792
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 466 bits (1200), Expect = e-131, Method: Compositional matrix adjust.
Identities = 283/744 (38%), Positives = 409/744 (54%), Gaps = 71/744 (9%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
MEFL GR N + NLG ++L +L +++ +E D +CFLDS
Sbjct: 66 MEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDS 125
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MAT+ A GYGL Y+YGLF+Q Q E +DW PW + V GK+
Sbjct: 126 MATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGKV 185
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
DG+ W I A+D+P+ GY+ LRLW + FDL+ FN GD +
Sbjct: 186 T--KDGR--WEPEFTITGQAWDLPVVGYRNGVAQPLRLWQA-THAHPFDLTKFNDGDFLR 240
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEF 240
A + NAEK+ +LYP D GK LRL QQY C+ S+ DI+ R A E
Sbjct: 241 AEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHL---AGRKLHEL 297
Query: 241 PEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSF 300
+ +Q+NDTHPT+ IPEL+R+LID +SW +AW IT +T AYTNHT++PEALE+W
Sbjct: 298 ADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDV 357
Query: 301 ELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKR--LKETRI-LENVDLPATFA 357
+L++ LLPRHM+II I+ T+V + D + K + + ++ + N+ + FA
Sbjct: 358 KLVKGLLPRHMQIINEINTRF-KTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFA 416
Query: 358 --------------DLFVKTKE---------STDVVPDDELENCD-------------EE 381
DLF + + + + P ++ C+ E
Sbjct: 417 VNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEW 476
Query: 382 GGPVDE--ELESAQEDGVLEEESTDV--------VSFIKEKTGYSVSPDAMFDIQVKRIH 431
+D+ LE +D ++ ++ F+K +TG ++P A+FDIQ+KR+H
Sbjct: 477 ANDLDQLINLEKFADDAKFRDQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLH 536
Query: 432 EYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVG 491
EYKRQ +N+L I+ YK+++E +R VPRV +FG KA Y AK I+ I V
Sbjct: 537 EYKRQHLNLLHILALYKEIRENPQADR----VPRVFLFGAKAAPGYYLAKNIIFAINKVA 592
Query: 492 ATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCI 551
+N+DP +GD LKV+F+PDY VS AE LIPA+++S+ ISTAG EASGT NMK A+NG +
Sbjct: 593 DVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGAL 652
Query: 552 LIGTLDGANVEIRQEVGEENFFLFGARAHEI-AGLRKERSEGKFV-PDARFEEVKKFVKS 609
+GTLDGANVEI ++VGEEN F+FG ++ A L K K+ D + V K ++S
Sbjct: 653 TVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKELES 712
Query: 610 GVFG---SYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMS 666
G + + +D+++ S+ G +G D +LV DF +Y+E Q++VD Y DQ+ WTR +
Sbjct: 713 GKYSDGDKHAFDQMLHSI-GKQG---GDPYLVMADFAAYVEAQKQVDVLYRDQEAWTRAA 768
Query: 667 IMNTAGSSKFSSDRTIQEYARDIW 690
I+NTA FSSDR+I++Y IW
Sbjct: 769 ILNTARCGMFSSDRSIRDYQARIW 792
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 461 bits (1186), Expect = e-130, Method: Compositional matrix adjust.
Identities = 281/744 (37%), Positives = 406/744 (54%), Gaps = 71/744 (9%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
MEFL GR N + NLG ++L +L +++ +E D +CFLDS
Sbjct: 66 MEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDS 125
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MAT+ A GYGL Y+YGLF+Q Q E +DW PW + V G +
Sbjct: 126 MATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGAV 185
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
DG+ W I A+D+P+ GY+ LRLW + FDL+ FN GD +
Sbjct: 186 T--KDGR--WEPEFTITGQAWDLPVVGYRNGVAQPLRLWQA-THAHPFDLTKFNDGDFLR 240
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEF 240
A + NAEK+ +LYP D GK LRL QQY C+ S+ DI+ R A E
Sbjct: 241 AEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHL---AGRELHEL 297
Query: 241 PEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSF 300
+ +Q+NDTHPT+ IPEL+R+LID +SW +AW IT +T AYTNHT++PEALE+W
Sbjct: 298 ADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDV 357
Query: 301 ELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKR--LKETRI-LENVDLPATFA 357
+L++ LLPRHM+II I+ T+V + D + K + + ++ + N+ + FA
Sbjct: 358 KLVKGLLPRHMQIINEINTRF-KTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFA 416
Query: 358 --------------DLFVKTKE---------STDVVPDDELENCD-------------EE 381
DLF + + + + P ++ C+ E
Sbjct: 417 VNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEW 476
Query: 382 GGPVDE--ELESAQEDG--------VLEEESTDVVSFIKEKTGYSVSPDAMFDIQVKRIH 431
+D+ L +D + + + F+K +TG ++P A+FDIQ+KR+H
Sbjct: 477 ANDLDQLINLVKLADDAKFRDLYRVIKQANKVRLAEFVKVRTGIDINPQAIFDIQIKRLH 536
Query: 432 EYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVG 491
EYKRQ +N+L I+ YK+++E +R VPRV +FG KA Y AK I+ I V
Sbjct: 537 EYKRQHLNLLRILALYKEIRENPQADR----VPRVFLFGAKAAPGYYLAKNIIFAINKVA 592
Query: 492 ATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCI 551
+N+DP +GD LKV+F+PDY VS AE LIPA+++S+ ISTAG EASGT NMK A+NG +
Sbjct: 593 DVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGAL 652
Query: 552 LIGTLDGANVEIRQEVGEENFFLFGARAHEI-AGLRKERSEGKFV-PDARFEEVKKFVKS 609
+GTLDGANVEI ++VGEEN F+FG ++ A L K K+ D + V K ++S
Sbjct: 653 TVGTLDGANVEIAEKVGEENIFIFGHTVKQVKAILAKGYDPVKWRKKDKVLDAVLKELES 712
Query: 610 GVFG---SYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMS 666
G + + +D+++ S+ G +G D +LV DF +Y+E Q++VD Y DQ+ WTR +
Sbjct: 713 GKYSDGDKHAFDQMLHSI-GKQG---GDPYLVMADFAAYVEAQKQVDVLYRDQEAWTRAA 768
Query: 667 IMNTAGSSKFSSDRTIQEYARDIW 690
I+NTA FSSDR+I++Y IW
Sbjct: 769 ILNTARCGMFSSDRSIRDYQARIW 792
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 461 bits (1185), Expect = e-130, Method: Compositional matrix adjust.
Identities = 281/744 (37%), Positives = 406/744 (54%), Gaps = 71/744 (9%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDS 60
MEFL GR N + NLG ++L +L +++ +E D +CFLDS
Sbjct: 67 MEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGAGGLGRLAACFLDS 126
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MAT+ A GYGL Y+YGLF+Q Q E +DW PW + V G +
Sbjct: 127 MATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGAV 186
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
DG+ W I A+D+P+ GY+ LRLW + FDL+ FN GD +
Sbjct: 187 T--KDGR--WEPEFTITGQAWDLPVVGYRNGVAQPLRLWQA-THAHPFDLTKFNDGDFLR 241
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEF 240
A + NAEK+ +LYP D GK LRL QQY C+ S+ DI+ R A E
Sbjct: 242 AEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHL---AGRELHEL 298
Query: 241 PEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSF 300
+ +Q+NDTHPT+ IPEL+R+LID +SW +AW IT +T AYTNHT++PEALE+W
Sbjct: 299 ADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDV 358
Query: 301 ELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKR--LKETRI-LENVDLPATFA 357
+L++ LLPRHM+II I+ T+V + D + K + + ++ + N+ + FA
Sbjct: 359 KLVKGLLPRHMQIINEINTRF-KTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFA 417
Query: 358 --------------DLFVKTKE---------STDVVPDDELENCD-------------EE 381
DLF + + + + P ++ C+ E
Sbjct: 418 VNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEW 477
Query: 382 GGPVDE--ELESAQEDG--------VLEEESTDVVSFIKEKTGYSVSPDAMFDIQVKRIH 431
+D+ L +D + + + F+K +TG ++P A+FDIQ+KR+H
Sbjct: 478 ANDLDQLINLVKLADDAKFRDLYRVIKQANKVRLAEFVKVRTGIDINPQAIFDIQIKRLH 537
Query: 432 EYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVG 491
EYKRQ +N+L I+ YK+++E +R VPRV +FG KA Y AK I+ I V
Sbjct: 538 EYKRQHLNLLRILALYKEIRENPQADR----VPRVFLFGAKAAPGYYLAKNIIFAINKVA 593
Query: 492 ATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCI 551
+N+DP +GD LKV+F+PDY VS AE LIPA+++S+ ISTAG EASGT NMK A+NG +
Sbjct: 594 DVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGAL 653
Query: 552 LIGTLDGANVEIRQEVGEENFFLFGARAHEI-AGLRKERSEGKFV-PDARFEEVKKFVKS 609
+GTLDGANVEI ++VGEEN F+FG ++ A L K K+ D + V K ++S
Sbjct: 654 TVGTLDGANVEIAEKVGEENIFIFGHTVKQVKAILAKGYDPVKWRKKDKVLDAVLKELES 713
Query: 610 GVFG---SYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMS 666
G + + +D+++ S+ G +G D +LV DF +Y+E Q++VD Y DQ+ WTR +
Sbjct: 714 GKYSDGDKHAFDQMLHSI-GKQG---GDPYLVMADFAAYVEAQKQVDVLYRDQEAWTRAA 769
Query: 667 IMNTAGSSKFSSDRTIQEYARDIW 690
I+NTA FSSDR+I++Y IW
Sbjct: 770 ILNTARCGMFSSDRSIRDYQARIW 793
>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site.
pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site
Length = 879
Score = 331 bits (849), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 173/357 (48%), Positives = 217/357 (60%), Gaps = 23/357 (6%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSK-------------LGQSLENVVSQEPDXXXXX 47
+EFL GRAL NA+ N+ + A SK LG LE+V+ QEPD
Sbjct: 104 LEFLMGRALDNALINMKIEDPEDPAASKGKPREMIKGALDELGFKLEDVLDQEPDAGLGN 163
Query: 48 XXXXXXXSCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIER 107
+CF+DSMAT PAWGYGLRY+YG+F Q+I Q E + WL GNPWEIER
Sbjct: 164 GGLGRLAACFVDSMATEGIPAWGYGLRYEYGIFAQKIIDGYQVETPDYWLNSGNPWEIER 223
Query: 108 NDVSYPVKFYGKIVPGSDGK-----SHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTM 162
N+V PV FYG + GK S WIGGE + AVAYD P+PG+KT NLRLW
Sbjct: 224 NEVQIPVTFYGYVDRPEGGKTTLSASQWIGGERVLAVAYDFPVPGFKTSNVNNLRLWQAR 283
Query: 163 VPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQD 222
P+ +FDL+ FN GD+ + AE I +LYP D +GK LRLKQQY C+ASL D
Sbjct: 284 -PTTEFDLNKFNNGDYKNSVAQQQRAESITAVLYPNDNFAQGKELRLKQQYFWCAASLHD 342
Query: 223 IIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRT 282
I+ RF+K W EFP++VA+Q+NDTHPTL I EL R+L+DL+ L W EAW+I +T
Sbjct: 343 ILRRFKKSKRP---WTEFPDQVAIQLNDTHPTLAIVELQRVLVDLEKLDWHEAWDIVTKT 399
Query: 283 VAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEK 339
AYTNHTV+ EALEKW L LLPRH+EII I+ + + ++ D DLL +
Sbjct: 400 FAYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFFLEDVAKKF-PKDVDLLSR 455
Score = 259 bits (661), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 138/282 (48%), Positives = 184/282 (65%), Gaps = 8/282 (2%)
Query: 420 DAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEM----SAVERKAKFVPR-VCIFGGKAF 474
D +FD+QVKRIHEYKRQ +N+ GI+YRY MK M +++E A+ PR V IFGGK+
Sbjct: 599 DTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSA 658
Query: 475 ATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAG 534
Y AK I+K I V VN+D I LLKV+FV DYNVS AE++IPAS+LS+HISTAG
Sbjct: 659 PGYYMAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAG 718
Query: 535 MEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKF 594
EASGTSNMKF MNG ++IGT+DGANVEI +E+GE+N FLFG + + LR
Sbjct: 719 TEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLFGNLSENVEELRYNHQYHPQ 778
Query: 595 VPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDE 654
+ + V +++SG F N +E ++ + G DY+LV DF SYL E VD+
Sbjct: 779 DLPSSLDSVLSYIESGQFSPENPNEFKPLVDSIKYHG--DYYLVSDDFESYLATHELVDQ 836
Query: 655 AYCDQK-RWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPV 695
+ +Q+ W + S+++ A FSSDR I+EY+ IWN+ PV
Sbjct: 837 EFHNQRSEWLKKSVLSLANVGFFSSDRCIEEYSDTIWNVEPV 878
>pdb|2C4M|A Chain A, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|B Chain B, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|C Chain C, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|D Chain D, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control
Length = 796
Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 144/353 (40%), Positives = 202/353 (57%), Gaps = 27/353 (7%)
Query: 356 FADLFVKTKESTDVVPD-DELENCDE--EGGPVDEELESAQEDGVLEEESTDVVSFIKEK 412
+DL + S D V D DEL+ + V EEL + + D +I E+
Sbjct: 453 LSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRA-----IKAANKQDFAEWILER 507
Query: 413 TGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGK 472
G + P+++FD+Q+KR+HEYKRQLMN L ++ Y ++KE + A R IFG K
Sbjct: 508 QGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPA----RTVIFGAK 563
Query: 473 AFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIST 532
A YV+AK I+K I + VN+DPE+ LLKV+FV +YNVS AE ++PAS++S+ IST
Sbjct: 564 AAPGYVRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQIST 623
Query: 533 AGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEG 592
AG EASGTSNMKF MNG + +GT+DGANVEI VGEEN ++FGAR E+ LR+
Sbjct: 624 AGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEENAYIFGARVEELPALRE----- 678
Query: 593 KFVPDARFEEVKKFVKS------GVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFP 643
+ P +E V ++ G N + +L SL G +D + V DF
Sbjct: 679 SYKPYELYETVPGLKRALDALDNGTLNDNNSGLFYDLKHSLIHGYGKDASDTYYVLGDFA 738
Query: 644 SYLECQEKVDEAYC-DQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPV 695
Y E ++++ Y D W RM+ +N S +FSSDRTI++YA +IW + P
Sbjct: 739 DYRETRDRMAADYASDPLGWARMAWINICESGRFSSDRTIRDYATEIWKLEPT 791
Score = 212 bits (540), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 172/320 (53%), Gaps = 19/320 (5%)
Query: 2 EFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDXXXXXXXXXXXXSCFLDSM 61
EFL GRALLN + NLGL A A +LG L +++ E D +CFLDS
Sbjct: 68 EFLMGRALLNNLTNLGLVDEAAAATRELGHELTDILEIENDAALGNGGLGRLAACFLDSA 127
Query: 62 ATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIV 121
T +YP GYGL Y++GLF+Q + Q E + W E P+ I R V F
Sbjct: 128 VTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWREEEYPFTIRRASDQLVVCF----- 182
Query: 122 PGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKA 181
D K+ +A+ YD+PI GY T LRLW P E+FD AFNA T A
Sbjct: 183 --DDMKT--------RAIPYDMPITGYGTHNVGTLRLWKAE-PWEEFDYDAFNAQRFTDA 231
Query: 182 AEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFP 241
IC +LYP D + EGK LR++QQY SASLQ +I + + + F
Sbjct: 232 IIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQAMI---QDHLAHHKDLSNFA 288
Query: 242 EKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFE 301
E +VQ+NDTHP L IPEL+R+L+D + W+E+W I +T AYTNHTVL EALE+W +
Sbjct: 289 EFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDEQ 348
Query: 302 LMQKLLPRHMEIIEMIDEEL 321
+ Q+L R EII ID
Sbjct: 349 IFQQLFWRVWEIIAEIDRRF 368
>pdb|1VHU|A Chain A, Crystal Structure Of A Putative Phosphoesterase
Length = 211
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 275 AWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTI 325
A N+ +R + Y HTV P WS EL +KL + +E +E V +I
Sbjct: 94 AXNLEERGIKYVFHTVGPICSGXWSEELKEKLYKAFLGPLEKAEEXGVESI 144
>pdb|1E3D|A Chain A, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc
27774
pdb|1E3D|C Chain C, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc
27774
Length = 266
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 552 LIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKK 605
L+ L G +E+ EVG F FG H++ RK G+F P EE +K
Sbjct: 161 LVAFLKGQKIEL-DEVGRPVMF-FGQSVHDLCERRKHFDAGEFAPSFNSEEARK 212
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine
Hydrolase 2bfq_3, Northeast Structural Genomics
Consortium (Nesg) Target Or248
Length = 199
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 275 AWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTI 325
A N+ +R + Y HTV P WS EL +KL + +E +E V +I
Sbjct: 85 AMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESI 135
>pdb|2BFR|A Chain A, The Macro Domain Is An Adp-Ribose Binding Module
pdb|2BFQ|A Chain A, Macro Domains Are Adp-Ribose Binding Molecules
Length = 192
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 275 AWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTI 325
A N+ +R + Y HTV P WS EL +KL + +E +E V +I
Sbjct: 85 AMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESI 135
>pdb|1HJZ|A Chain A, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
pdb|1HJZ|B Chain B, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
Length = 192
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 275 AWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTI 325
A N+ +R + Y HTV P WS EL +KL + +E +E V +I
Sbjct: 85 AMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESI 135
>pdb|4GQ2|M Chain M, S. Pombe Nup120-Nup37 Complex
Length = 950
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 83/200 (41%), Gaps = 23/200 (11%)
Query: 313 IIEMIDEELVHTIVSEYGTADPDLLE--KRLKETRILENVDLPATFADLFVKTKESTDVV 370
+IE DEE + ++S T DP L+E + L R L + +T +++ +E +
Sbjct: 548 LIESFDEEPLTKLISSLETDDPSLIEGYQILDLGRSLHSCMSFSTLSEIRYSLRELVQDL 607
Query: 371 PDDELENC-----DEEGGP-VDEELESAQEDGV--LEEESTDVVSFIKEKTGYSV----- 417
P L + D+ P VD + S D + LE D+ S I+ + +
Sbjct: 608 PSYSLFDTLWVFYDKHIYPNVDPDYISTLIDTLVSLENPMRDIDSLIQRLRSFDIYNHSA 667
Query: 418 -SPDAMFDIQVKRIHE--YKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAF 474
SP V R+ + K+ ++I G ++ + E ++KF K F
Sbjct: 668 QSPSLFLCASVARVLDSILKKFQVSIEGFIFLLSLITSQQDYELQSKFAG-----CDKLF 722
Query: 475 ATYVQAKRIVKFITDVGATV 494
+ ++ R+V F+ + A +
Sbjct: 723 LSLLEDWRLVSFLLENSALL 742
>pdb|4FHM|B Chain B, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
Length = 964
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 83/200 (41%), Gaps = 23/200 (11%)
Query: 313 IIEMIDEELVHTIVSEYGTADPDLLE--KRLKETRILENVDLPATFADLFVKTKESTDVV 370
+IE DEE + ++S T DP L+E + L R L + +T +++ +E +
Sbjct: 550 LIESFDEEPLTKLISSLETDDPSLIEGYQILDLGRSLHSCMSFSTLSEIRYSLRELVQDL 609
Query: 371 PDDELENC-----DEEGGP-VDEELESAQEDGV--LEEESTDVVSFIKEKTGYSV----- 417
P L + D+ P VD + S D + LE D+ S I+ + +
Sbjct: 610 PSYSLFDTLWVFYDKHIYPNVDPDYISTLIDTLVSLENPMRDIDSLIQRLRSFDIYNHSA 669
Query: 418 -SPDAMFDIQVKRIHE--YKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAF 474
SP V R+ + K+ ++I G ++ + E ++KF K F
Sbjct: 670 QSPSLFLCASVARVLDSILKKFQVSIEGFIFLLSLITSQQDYELQSKFAG-----CDKLF 724
Query: 475 ATYVQAKRIVKFITDVGATV 494
+ ++ R+V F+ + A +
Sbjct: 725 LSLLEDWRLVSFLLENSALL 744
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,395,697
Number of Sequences: 62578
Number of extensions: 935684
Number of successful extensions: 2686
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2469
Number of HSP's gapped (non-prelim): 73
length of query: 698
length of database: 14,973,337
effective HSP length: 106
effective length of query: 592
effective length of database: 8,340,069
effective search space: 4937320848
effective search space used: 4937320848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)