RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 005402
(698 letters)
>gnl|CDD|233722 TIGR02093, P_ylase, glycogen/starch/alpha-glucan phosphorylases.
This family consists of phosphorylases. Members use
phosphate to break alpha 1,4 linkages between pairs of
glucose residues at the end of long glucose polymers,
releasing alpha-D-glucose 1-phosphate. The nomenclature
convention is to preface the name according to the
natural substrate, as in glycogen phosphorylase, starch
phosphorylase, maltodextrin phosphorylase, etc. Name
differences among these substrates reflect differences
in patterns of branching with alpha 1,6 linkages.
Members include allosterically regulated and unregulated
forms. A related family, TIGR02094, contains examples
known to act well on particularly small alpha 1,4
glucans, as may be found after import from exogenous
sources [Energy metabolism, Biosynthesis and degradation
of polysaccharides].
Length = 794
Score = 836 bits (2162), Expect = 0.0
Identities = 341/765 (44%), Positives = 441/765 (57%), Gaps = 100/765 (13%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDS 60
EFL GR L N + NLGL EAL +LG LE ++ E DA LGNGGLGRLA+CFLDS
Sbjct: 57 AEFLMGRLLGNNLLNLGLYDEVKEALRELGLDLEEILEIENDAGLGNGGLGRLAACFLDS 116
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
+ATL PA GYG+RY+YGLFKQ+I Q E+ +DWL GNPWEI R D SY V+F G++
Sbjct: 117 LATLGLPATGYGIRYEYGLFKQKIVDGWQVELPDDWLRYGNPWEIRRPDRSYEVRFGGRV 176
Query: 121 VPGSDGKSH---WIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGD 177
D W+ E + A+ YD+P+PGY+T T LRLWS E+FDL AFNAGD
Sbjct: 177 ELQPDSDRLRPRWVPAETVLAIPYDVPVPGYRTDTVNTLRLWSAE-APEEFDLDAFNAGD 235
Query: 178 HTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNW 237
+ +A E AE I +LYP D + EGK LRLKQQY SASLQDII R + +
Sbjct: 236 YYEAVEEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQDIIRRHLETHP---DL 292
Query: 238 EEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHT-------- 289
+FP+KVA+Q+NDTHP L IPEL+R+LID +G+ W EAW+IT +T AYTNHT
Sbjct: 293 SDFPKKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEK 352
Query: 290 --------VLPEALE-------KWSFELMQKL-----LPRHMEIIEMIDEELVH----TI 325
+LP LE ++ EL K R M IIE + V I
Sbjct: 353 WPVDLFQKLLPRHLEIIYEINRRFLAELAAKGPGDEAKIRRMSIIEEGQSKRVRMANLAI 412
Query: 326 VSEY---GTADPDLLEKRLKETRILENVDLPATFADLFV-----KT-------------K 364
V + G A L T +L+ L F +L+ KT
Sbjct: 413 VGSHSVNGVA-------AL-HTELLKEDLLKD-FYELYPEKFNNKTNGITPRRWLRLANP 463
Query: 365 ESTDVVP----DDELENCDEEGGPVDEELESAQEDGVLEEESTDV--------VSFIKEK 412
+ ++ DD L + D ++LE +D EE V ++IKE
Sbjct: 464 GLSALLTETIGDDWLTDLDLL-----KKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEH 518
Query: 413 TGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGK 472
TG V P+++FD+QVKR+HEYKRQL+N+L ++Y Y ++KE VPR IFGGK
Sbjct: 519 TGVEVDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPP----KDIVPRTVIFGGK 574
Query: 473 AFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIST 532
A Y AK I+K I V VN+DP +GD LKV+FVP+YNVS+AEL+IPA++LS+ IST
Sbjct: 575 AAPGYHMAKLIIKLINSVAEVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQIST 634
Query: 533 AGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RS 590
AG EASGT NMKF +NG + IGTLDGANVEIR+EVG EN F+FG E+ LR++
Sbjct: 635 AGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGLTVEEVEALREKGYNP 694
Query: 591 EGKFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLE 647
+ D + V + SG F + + L SL + D F V DF +Y++
Sbjct: 695 REYYEADPELKRVLDLISSGTFSPGDPGLFRPLYDSLLNHG-----DPFFVLADFAAYVD 749
Query: 648 CQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 692
QE+VD Y DQ WT+ SI+N A S KFSSDRTI+EYA++IW++
Sbjct: 750 AQERVDALYRDQLEWTKKSILNIANSGKFSSDRTIREYAKEIWHV 794
>gnl|CDD|99996 cd04300, GT1_Glycogen_Phosphorylase, This is a family of
oligosaccharide phosphorylases. It includes yeast and
mammalian glycogen phosphorylases, plant starch/glucan
phosphorylase, as well as the maltodextrin
phosphorylases of bacteria. The members of this family
catalyze the breakdown of oligosaccharides into
glucose-1-phosphate units. They are important allosteric
enzymes in carbohydrate metabolism. The allosteric
control mechanisms of yeast and mammalian members of
this family are different from that of bacterial
members. The members of this family belong to the GT-B
structural superfamily of glycoslytransferases, which
have characteristic N- and C-terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two
domains includes the catalytic center and permits a high
degree of flexibility.
Length = 797
Score = 546 bits (1410), Expect = 0.0
Identities = 189/323 (58%), Positives = 231/323 (71%), Gaps = 9/323 (2%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDS 60
+EFL GR L N + NLGL EAL++LG LE++ QEPDA LGNGGLGRLA+CFLDS
Sbjct: 60 LEFLMGRLLGNNLLNLGLYDEVREALAELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDS 119
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDG-QEEVAEDWLELGNPWEIERNDVSYPVKFYGK 119
+ATL P +GYG+RY+YGLFKQ+I DG Q E+ ++WL GNPWEI R DV+ PV+F G+
Sbjct: 120 LATLGLPGYGYGIRYEYGLFKQKI-VDGYQVELPDNWLRYGNPWEIRRPDVAVPVRFGGR 178
Query: 120 IVPGSDG---KSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAG 176
+ DG + W+ GE + AV YD PIPGY T T LRLWS SE+FDL AFN G
Sbjct: 179 VEHYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLRLWSA-EASEEFDLDAFNRG 237
Query: 177 DHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVN 236
D+ +A E AE I +LYP D + EGK LRLKQQY SASLQDII RF+K G
Sbjct: 238 DYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKTHG---P 294
Query: 237 WEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALE 296
EFP+KVA+Q+NDTHP L IPEL+RIL+D +GL W EAW+IT +T AYTNHT+LPEALE
Sbjct: 295 LSEFPDKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALE 354
Query: 297 KWSFELMQKLLPRHMEIIEMIDE 319
KW +L ++LLPRH+EII I+
Sbjct: 355 KWPVDLFERLLPRHLEIIYEINR 377
Score = 463 bits (1193), Expect = e-153
Identities = 153/295 (51%), Positives = 191/295 (64%), Gaps = 22/295 (7%)
Query: 407 SFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRV 466
++IK+ TG V PD++FD+QVKRIHEYKRQL+N+L I++ Y ++KE A VPR
Sbjct: 516 AYIKKTTGVEVDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENP----NADIVPRT 571
Query: 467 CIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASEL 526
IFGGKA Y AK I+K I V VN+DP++GD LKV+F+P+YNVS+AE +IPA++L
Sbjct: 572 FIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADL 631
Query: 527 SQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLR 586
S+ ISTAG EASGT NMKF +NG + IGTLDGANVEI +EVGEEN F+FG A E+ LR
Sbjct: 632 SEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEALR 691
Query: 587 KERSEGKFV--PDARFEEVKKFVKSGVFGSYN-------YDELMGSLEGNEGFGQADYFL 637
D V + SG F + D L L GN D +L
Sbjct: 692 ANGYYPADYYEADPELRRVLDQIASGFFSPGDPGEFRPLVDSL---LNGN------DEYL 742
Query: 638 VGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 692
V DF SY++ QEKVD Y DQ+ W R SI+N A S KFSSDRTI+EYA DIWN+
Sbjct: 743 VLADFESYVDAQEKVDALYRDQEEWARKSILNIARSGKFSSDRTIREYAEDIWNV 797
>gnl|CDD|215868 pfam00343, Phosphorylase, Carbohydrate phosphorylase. The members
of this family catalyze the formation of glucose
1-phosphate from one of the following polyglucoses;
glycogen, starch, glucan or maltodextrin.
Length = 712
Score = 468 bits (1207), Expect = e-156
Identities = 184/324 (56%), Positives = 232/324 (71%), Gaps = 9/324 (2%)
Query: 25 ALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRI 84
AL +LG +LE ++ +E DA LGNGGLGRLA+CFLDS+ATL PA+GYG+RY+YG+F+Q+I
Sbjct: 1 ALKELGLNLEELLEEENDAGLGNGGLGRLAACFLDSLATLGLPAYGYGIRYEYGMFEQKI 60
Query: 85 TKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIP 144
Q E+ +DWLE GNPWEIER DV YPV+FYGK+ K+ W E + AVAYD P
Sbjct: 61 VDGWQVELPDDWLEYGNPWEIERPDVRYPVRFYGKVEEKEGRKTKWDDTEVVLAVAYDTP 120
Query: 145 IPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEG 204
IPGY+T T LRLWS SE+F+L+ FN GD+ A E AE I +LYP D + EG
Sbjct: 121 IPGYRTNNTNTLRLWSAK-ASEEFNLADFNDGDYLAAVEDKNRAENISRVLYPNDNTFEG 179
Query: 205 KVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRIL 264
K LRLKQQY L SA+LQDII RF K+S + EFP+KVA+Q+NDTHPTL IPEL+RIL
Sbjct: 180 KELRLKQQYFLVSATLQDIIRRF-KKSHK--SLSEFPDKVAIQLNDTHPTLAIPELMRIL 236
Query: 265 IDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHT 324
ID +GLSW EAW IT +T AYTNHTVLPEALEKW L++KLLPRH++II I+E +
Sbjct: 237 IDEEGLSWDEAWEITTKTFAYTNHTVLPEALEKWPVHLVEKLLPRHLQIIYEINERFLKL 296
Query: 325 IVSEYGTADPDLLEKRLKETRILE 348
+ ++ P E +L+ I++
Sbjct: 297 VWEKW----PG-DEDKLRRMSIID 315
Score = 433 bits (1116), Expect = e-143
Identities = 157/292 (53%), Positives = 207/292 (70%), Gaps = 15/292 (5%)
Query: 408 FIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVC 467
+I+++TG V+P+A+FD+QVKRIHEYKRQL+N+L ++YRY ++KE VPRV
Sbjct: 431 YIEKETGVVVNPNALFDVQVKRIHEYKRQLLNVLHVIYRYNRIKEDP----PKDVVPRVV 486
Query: 468 IFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELS 527
IFGGKA Y AKRI+K I V VN+DP +GD LKV+F+P+Y VS+AE +IPAS++S
Sbjct: 487 IFGGKAAPGYYMAKRIIKLINSVADVVNNDPAVGDKLKVVFLPNYRVSLAEKIIPASDIS 546
Query: 528 QHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRK 587
+ ISTAG EASGTSNMKFA+NG + IGTLDGANVEI +EVGEEN F+FG A E+ LRK
Sbjct: 547 EQISTAGTEASGTSNMKFALNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEALRK 606
Query: 588 E--RSEGKFVPDARFEEVKKFVKSGVFG---SYNYDELMGSLEGNEGFGQADYFLVGKDF 642
+ RS + D R +V + SG F + +++ SL+G DY+LV DF
Sbjct: 607 KGYRSREYYKKDPRLRQVLDQIISGFFSPEDPDRFRDILDSLQGG------DYYLVFADF 660
Query: 643 PSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
PSY++ Q++VDE Y D++ WT+ SI+N A S KFSSDRTI+EYA+ IW I P
Sbjct: 661 PSYVDAQKRVDELYKDREAWTKKSILNIANSGKFSSDRTIKEYAKRIWGIEP 712
>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional.
Length = 798
Score = 338 bits (870), Expect = e-105
Identities = 142/321 (44%), Positives = 187/321 (58%), Gaps = 5/321 (1%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDS 60
MEFL GR N + NLG + L +L +++ +E D ALGNGGLGRLA+CFLDS
Sbjct: 66 MEFLIGRLTGNNLLNLGWYDDVQDVLKAYDINLTDLLEEETDPALGNGGLGRLAACFLDS 125
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MAT+ PA GYGL Y+YGLF+Q Q E +DW PW + V GK+
Sbjct: 126 MATVGQPATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRDSYPWFRHNEALDVQVGIGGKV 185
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
DG+ W I A+D+P+ GY+ LRLW FDL+ FN GD +
Sbjct: 186 TK-QDGRERWEPAFTITGEAWDLPVVGYRNGVAQPLRLWQATHAHP-FDLTKFNDGDFLR 243
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEF 240
A + +AEK+ +LYP D GK LRL QQY C+ S+ DI+ R A E
Sbjct: 244 AEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHL---AGRKLHEL 300
Query: 241 PEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSF 300
P+ +Q+NDTHPT+ IPEL+R+L+D LSW +AW IT +T AYTNHT++PEALE W
Sbjct: 301 PDYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDE 360
Query: 301 ELMQKLLPRHMEIIEMIDEEL 321
+L++ LLPRHM+II+ I+
Sbjct: 361 KLVKSLLPRHMQIIKEINTRF 381
Score = 303 bits (777), Expect = 6e-92
Identities = 133/297 (44%), Positives = 191/297 (64%), Gaps = 22/297 (7%)
Query: 403 TDVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKF 462
+ F+K++TG ++P A+FD+Q+KR+HEYKRQ +N+L I+ YK+++E +R
Sbjct: 511 VRLAEFVKQRTGIEINPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADR---- 566
Query: 463 VPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIP 522
VPRV +FG KA Y AK I+ I V +N+DP +GD LKV+F+PDY VS AELLIP
Sbjct: 567 VPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVGDKLKVVFLPDYCVSAAELLIP 626
Query: 523 ASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEI 582
A+++S+ ISTAG EASGT NMK A+NG + +GTLDGANVEI ++VGEEN F+FG ++
Sbjct: 627 AADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVEQV 686
Query: 583 AGLRKERSEGKFVP------DARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQA 633
L + P D + V K ++SG + + +D+++ SL+
Sbjct: 687 KALLA----KGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSLKQG-----G 737
Query: 634 DYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIW 690
D +LV DF +Y+E Q++VD Y DQ+ WTR +I+NTA FSSDR+I++Y IW
Sbjct: 738 DPYLVLADFAAYVEAQKQVDALYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIW 794
>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional.
Length = 815
Score = 334 bits (859), Expect = e-104
Identities = 156/340 (45%), Positives = 219/340 (64%), Gaps = 8/340 (2%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDS 60
MEFL GR L NA+ +LG+ AL +G LE ++ +E D LGNGGLGRLA+CFLDS
Sbjct: 77 MEFLIGRTLSNALLSLGIYDDVQGALEAMGLDLEELIDEENDPGLGNGGLGRLAACFLDS 136
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
+ATL P GYG+RY YG+FKQ I Q+E + WLE GNPWE +R++ Y V+F G+I
Sbjct: 137 LATLGLPGRGYGIRYDYGMFKQNIVNGRQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRI 196
Query: 121 -VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHT 179
G K+ WI E+I AVAYD IPGY T T LRLWS SE +L FN GD+
Sbjct: 197 QQEGK--KTRWIETEEILAVAYDQIIPGYDTDATNTLRLWSAQASSE-INLGKFNQGDYF 253
Query: 180 KAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEE 239
A E ++E + +LYP D + G+ LRL+Q+Y L SA++QDI++R + + ++
Sbjct: 254 AAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDILSRHYQ---LHKTYDN 310
Query: 240 FPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWS 299
+K+A+ +NDTHP L IPEL+R+LID SW +A+ + + +YTNHT++ EALE W
Sbjct: 311 LADKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWP 370
Query: 300 FELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEK 339
+++ K+LPRH++II I++ + T+ +Y D DLL +
Sbjct: 371 VDMLGKILPRHLQIIFEINDYFLKTLQEQY-PNDTDLLGR 409
Score = 321 bits (823), Expect = 1e-98
Identities = 147/295 (49%), Positives = 204/295 (69%), Gaps = 14/295 (4%)
Query: 408 FIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVC 467
+I ++ V+P A+FD+Q+KRIHEYKRQLMN+L ++ RY ++K + AK+VPRV
Sbjct: 530 YIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKA----DPDAKWVPRVN 585
Query: 468 IFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELS 527
IF GKA + Y AK I+ I DV +N+DP+IGD LKV+F+P+Y+VS+A+L+IPA++LS
Sbjct: 586 IFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLS 645
Query: 528 QHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRK 587
+ IS AG EASGTSNMKFA+NG + IGTLDGANVE+ + VGEEN F+FG A E+ LR+
Sbjct: 646 EQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGNTAEEVEALRR 705
Query: 588 E--RSEGKFVPDARFEEVKKFVKSGVFG---SYNYDELMGSLEGNEGFGQADYFLVGKDF 642
+ + + D +V + SGVF Y +L+ SL FG D++ V D+
Sbjct: 706 QGYKPREYYEKDEELHQVLTQIGSGVFSPEEPGRYRDLVDSL---INFG--DHYQVLADY 760
Query: 643 PSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 697
SY++CQ+KVDE Y +Q+ WTR +++N A FSSDRTI+EYA +IW+I PV L
Sbjct: 761 RSYVDCQDKVDELYRNQEEWTRKAMLNIANMGYFSSDRTIKEYADEIWHIDPVRL 815
>gnl|CDD|223136 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and
metabolism].
Length = 750
Score = 327 bits (841), Expect = e-101
Identities = 142/320 (44%), Positives = 175/320 (54%), Gaps = 48/320 (15%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDS 60
MEFL GR L N + NLG+ EAL +LG L E D LG GGLGRLA CFLDS
Sbjct: 69 MEFLIGRLLGNNLWNLGIYDDVQEALKELGYFLMEFGEHESDPGLG-GGLGRLAGCFLDS 127
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDG-QEEVAEDWLELGNPWEIERNDVSYPVKFYGK 119
A L P GYGLRY+YG F+Q DG Q E+ ++WL+ GNPWE R+
Sbjct: 128 AADLGLPLTGYGLRYRYGYFRQSD-VDGWQVELPDEWLKYGNPWEFLRDAE--------- 177
Query: 120 IVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHT 179
V YD+P+PGY + LRLW V L FN G++
Sbjct: 178 ------------------GVPYDVPVPGYDN-RVVTLRLWQAQVGRVPLYLLDFNVGENK 218
Query: 180 KAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEE 239
+A I +LYPGD K LRLKQ+Y L SA +QDI+AR + +
Sbjct: 219 ------NDARNITRVLYPGDS----KELRLKQEYFLGSAGVQDILARGHLEHH---DLDV 265
Query: 240 FPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWS 299
+ +NDTHP L IPEL+R+LID +GLSW EAW I ++T YTNHT LPEALE W
Sbjct: 266 LADH----LNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWP 321
Query: 300 FELMQKLLPRHMEIIEMIDE 319
EL +KLLPRH++II I+
Sbjct: 322 VELFKKLLPRHLQIIYEINA 341
Score = 306 bits (786), Expect = 1e-93
Identities = 131/318 (41%), Positives = 181/318 (56%), Gaps = 26/318 (8%)
Query: 387 EELESAQEDGVLEEESTDV--------VSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLM 438
+EL +D E ++ I ++TG V P+A+FD Q +RIHEYKRQL+
Sbjct: 445 DELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIEVDPNALFDGQARRIHEYKRQLL 504
Query: 439 NILGIVYRYKKMKEMSAVERKAKFVPRV-CIFGGKAFATYVQAKRIVKFITDVGATVNHD 497
N+L I Y+ +KE +VPRV IF GKA AK I+K I DV +N+
Sbjct: 505 NLLDIERLYRILKE--------DWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINN- 555
Query: 498 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLD 557
LKV+F+P+Y+VS+AELLIPA+++ + I TAG EASGTSNMK A+NG + +GTLD
Sbjct: 556 -----KLKVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLD 610
Query: 558 GANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVK---KFVKSGVFGS 614
GANVEI + VG EN ++FG E+ LR + + + EVK + G F
Sbjct: 611 GANVEIYEHVGGENGWIFGETVEEVDALRADGYDPNALYYELENEVKPVLDEIIDGRFSP 670
Query: 615 YNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSS 674
++ D +V DF +Y+ QE+VD Y DQ+ WT+ +I+N A S
Sbjct: 671 GWKSRFKNLIDSLLPKFGTDRMMVLYDFKAYVPAQEEVDALYRDQEAWTKKAILNIANSG 730
Query: 675 KFSSDRTIQEYARDIWNI 692
FSSDRTI+EYA +IW+I
Sbjct: 731 LFSSDRTIREYAGEIWHI 748
>gnl|CDD|233723 TIGR02094, more_P_ylases, alpha-glucan phosphorylases. This family
consists of known phosphorylases, and homologs believed
to share the function of using inorganic phosphate to
cleave an alpha 1,4 linkage between the terminal glucose
residue and the rest of the polymer (maltodextrin,
glycogen, etc.). The name of the glucose storage polymer
substrate, and therefore the name of this enzyme,
depends on the chain lengths and branching patterns. A
number of the members of this family have been shown to
operate on small maltodextrins, as may be obtained by
utilization of exogenous sources. This family represents
a distinct clade from the related family modeled by
TIGR02093/pfam00343.
Length = 601
Score = 72.7 bits (179), Expect = 3e-13
Identities = 60/266 (22%), Positives = 99/266 (37%), Gaps = 65/266 (24%)
Query: 48 GGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGN-PWEIE 106
GGLG LA L S + L P GL YK G F+QR+ +DG ++ A + + P E
Sbjct: 19 GGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKV 78
Query: 107 RNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSE 166
+ G+ +K + I G + ++W V
Sbjct: 79 LDT----------------------DGKWLKI---SVRIRGRD----VYAKVWRVQVGRV 109
Query: 167 -----DFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQ 221
D ++ + D I LY GD+ +R+ Q+ L ++
Sbjct: 110 PLYLLDTNIPENSEDDR-----------WITGRLYGGDKE-----MRIAQEIVLGIGGVR 153
Query: 222 DIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQR 281
+ A +N+ H E IR LI +GLS++EAW ++
Sbjct: 154 ALRALGIDPDV-------------YHLNEGHAAFVTLERIRELIA-QGLSFEEAWEAVRK 199
Query: 282 TVAYTNHTVLPEALEKWSFELMQKLL 307
+ +T HT +P + + +LM+K
Sbjct: 200 SSLFTTHTPVPAGHDVFPEDLMRKYF 225
Score = 60.4 bits (147), Expect = 2e-09
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 457 ERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSV 516
ER + V F GKA + K I++ I + PE +++F+ +Y++++
Sbjct: 422 ERPVQIV-----FAGKAHPADGEGKEIIQRI----VEFSKRPEFRG--RIVFLENYDINL 470
Query: 517 AELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG 558
A L+ ++ + +EASGTS MK AMNG + + LDG
Sbjct: 471 ARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDG 512
>gnl|CDD|99995 cd04299, GT1_Glycogen_Phosphorylase_like, This family is most
closely related to the oligosaccharide phosphorylase
domain family and other unidentified sequences.
Oligosaccharide phosphorylase catalyzes the breakdown of
oligosaccharides into glucose-1-phosphate units. They
are important allosteric enzymes in carbohydrate
metabolism. The members of this family are found in
bacteria and Archaea.
Length = 778
Score = 59.5 bits (145), Expect = 4e-09
Identities = 68/268 (25%), Positives = 102/268 (38%), Gaps = 72/268 (26%)
Query: 48 GGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIER 107
GGLG LA L + + L P G GL Y+ G F+QR+ DG W+ E
Sbjct: 106 GGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADG--------------WQQET 151
Query: 108 NDVSYPV-KFYG-KIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPS 165
YPV F + P D GE ++ + +PG T+ R+W V
Sbjct: 152 ----YPVNDFEQLPLEPVRDAD-----GEPVRV---SVELPGR----TVYARVWKAQVGR 195
Query: 166 E-----DFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASL 220
D D+ + D I LY GD+ R++Q+ L
Sbjct: 196 VPLYLLDTDIPENSPDDR-----------GITDRLYGGDQET-----RIQQEILLG---- 235
Query: 221 QDIIA--RFEKRSGANVNWEEFPEKVAV-QMNDTHPTLCIPELIRILIDLKGLSWKEAWN 277
I R + G K V MN+ H E IR L+ GLS+ EA
Sbjct: 236 ---IGGVRALRALG---------IKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALE 283
Query: 278 ITQRTVAYTNHTVLPEALEKWSFELMQK 305
+ + +T HT +P +++ +L+++
Sbjct: 284 AVRASTVFTTHTPVPAGHDRFPPDLVER 311
Score = 56.4 bits (137), Expect = 4e-08
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 468 IFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELS 527
IF GKA K +++ I + + PE +++F+ DY++++A L+ ++
Sbjct: 517 IFAGKAHPADEPGKELIQEIVEF----SRRPEFRG--RIVFLEDYDMALARHLVQGVDVW 570
Query: 528 QHISTAGMEASGTSNMKFAMNGCILIGTLDG 558
+ +EASGTS MK A+NG + + LDG
Sbjct: 571 LNTPRRPLEASGTSGMKAALNGGLNLSVLDG 601
>gnl|CDD|177354 PHA02151, PHA02151, hypothetical protein.
Length = 217
Score = 33.4 bits (76), Expect = 0.30
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 19/84 (22%)
Query: 120 IVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHT 179
I+ G G W+ +DI +D+P P + + + W TM HT
Sbjct: 91 ILGGLTGVMDWLDNDDI---TFDVPTPDFNLEIKTSFNRWPTM---------------HT 132
Query: 180 KAAEALTNAEKIC-YILYPGDESV 202
AE A+ +C Y Y G+ V
Sbjct: 133 AGAEPYGRADGLCLYAGYKGNADV 156
>gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. The structures of the formed
glycoconjugates are extremely diverse, reflecting a wide
range of biological functions. The members of this
family share a common GTB topology, one of the two
protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility.
Length = 229
Score = 32.6 bits (74), Expect = 0.52
Identities = 21/151 (13%), Positives = 40/151 (26%), Gaps = 31/151 (20%)
Query: 426 QVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVK 485
V R+ K I + K + + G + +
Sbjct: 109 FVGRLAPEKGLDDLIE------------AFALLKERGPDLKLVIAGDGPEREYLEELLAA 156
Query: 486 FITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPA-SELSQHISTAGMEASGTSNMK 544
+ L +VIF+ + L+ A +++ + + E G ++
Sbjct: 157 --------------LLLLDRVIFLGGLDPEELLALLLAAADVF--VLPSLREGFGLVVLE 200
Query: 545 FAMNGCILIGTLDGANVEIRQEVGEENFFLF 575
G +I T G EI L
Sbjct: 201 AMACGLPVIATDVGGPPEI--VEDGLTGLLV 229
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 30.7 bits (70), Expect = 2.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 217 SASLQDIIARFEKRSGANVNW 237
+ ++QDIIAR+++ G NV W
Sbjct: 23 NNTIQDIIARYKRMKGYNVLW 43
>gnl|CDD|224181 COG1261, FlgA, Flagellar basal body P-ring biosynthesis protein
[Cell motility and secretion / Posttranslational
modification, protein turnover, chaperones].
Length = 220
Score = 30.0 bits (68), Expect = 3.2
Identities = 24/146 (16%), Positives = 41/146 (28%), Gaps = 12/146 (8%)
Query: 134 EDIKAVAYDIPIPGYKTKTTINLRLWST-MVPSEDFDLSAFNAGDHTKAAEALTNAEKIC 192
I P Y + N R+W V + +L F E + A I
Sbjct: 46 LIITERNLLAPCDQYLLTASNNARVWGNVNVLASCSNLPRFVRVAVQAPGEVVVAARTI- 104
Query: 193 YILYPGD-------ESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVA 245
Y G+ + G + L Y L + +++ G + +
Sbjct: 105 ---YRGEKISAADVKLKRGDLDALPPGYVLDPDEVVGKVSKRTLLPGQPILASMLRQAWL 161
Query: 246 VQMNDTHPTLCIPELIRILIDLKGLS 271
V+ + I I + K L
Sbjct: 162 VKRGQIVTVVAEGGGISITAEGKALE 187
>gnl|CDD|221279 pfam11867, DUF3387, Domain of unknown function (DUF3387). This
domain is functionally uncharacterized. This domain is
found in bacteria and archaea. This presumed domain is
typically between 255 to 340 amino acids in length. This
domain is found associated with pfam04851, pfam04313.
Length = 333
Score = 30.2 bits (69), Expect = 3.7
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Query: 168 FDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGK------VLRLKQQYTLCSAS 219
FD S F GD + + L A +IL G + +GK VL L + + LCS
Sbjct: 34 FDYSDFFTGDPAERLKLLLGAAN--HIL--GLD--DGKKRFLDAVLALSKAFALCSPH 85
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 30.4 bits (69), Expect = 3.7
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 309 RHMEIIEM---IDEELVHTIVSEYGTADPDLLEK--------RLKETRILENVDLPATFA 357
RH + + + +LV T++ G P+L EK L+E R + ++
Sbjct: 312 RHGKKLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLF 371
Query: 358 DLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDG 396
+ +K ++ +D + D G PV+ E A+E G
Sbjct: 372 EKLLKKLGKKELDGEDAFKLYDTYGFPVELTKEIAEERG 410
>gnl|CDD|216676 pfam01746, tRNA_m1G_MT, tRNA (Guanine-1)-methyltransferase. This
is a family of tRNA (Guanine-1)-methyltransferases
EC:2.1.1.31. In E.coli K12 this enzyme catalyzes the
conversion of a guanosine residue to N1-methylguanine in
position 37, next to the anticodon, in tRNA.
Length = 185
Score = 29.6 bits (67), Expect = 4.3
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 380 EEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTGYSVSPD--AMFDI----QVKRIHEY 433
E+G + A GVL S + SF+ Y+ + +I +I +
Sbjct: 114 EKGALTLIDAVVALLPGVLNTASLPLDSFLLGVPNYTRPLTLNQVPEILLSGNHAKIRNW 173
Query: 434 KRQLMNIL 441
+ L+ +
Sbjct: 174 EEALLRTI 181
>gnl|CDD|226883 COG4477, EzrA, Negative regulator of septation ring formation [Cell
division and chromosome partitioning].
Length = 570
Score = 30.0 bits (68), Expect = 4.5
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 309 RHMEIIEMIDEELVHTIVSEYGTADPDLLEK------RLKETR-ILENVDLPATFADLFV 361
HM + I E + ++++E T P L+ +KE LE+V++ + L
Sbjct: 204 EHMIALRSIMER-IPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKE 262
Query: 362 KTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEE 401
+ E+++++ EL+ +EE G + E++ES + +LE E
Sbjct: 263 QLVENSELLTQLELDEAEEELGLIQEKIESLYD--LLERE 300
>gnl|CDD|223190 COG0112, GlyA, Glycine/serine hydroxymethyltransferase [Amino acid
transport and metabolism].
Length = 413
Score = 29.9 bits (68), Expect = 4.7
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 453 MSAVERKAKFV-PRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 497
VE+ AK V P++ I GG A++ + KR + +VGA + D
Sbjct: 155 YDEVEKLAKEVKPKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVD 200
>gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs.
CDP-tyvelose 2-epimerase is a tetrameric SDR that
catalyzes the conversion of CDP-D-paratose to
CDP-D-tyvelose, the last step in tyvelose biosynthesis.
This subgroup is a member of the extended SDR subfamily,
with a characteristic active site tetrad and NAD-binding
motif. Extended SDRs are distinct from classical SDRs.
In addition to the Rossmann fold (alpha/beta folding
pattern with a central beta-sheet) core region typical
of all SDRs, extended SDRs have a less conserved
C-terminal extension of approximately 100 amino acids.
Extended SDRs are a diverse collection of proteins, and
include isomerases, epimerases, oxidoreductases, and
lyases; they typically have a TGXXGXXG cofactor binding
motif. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold, an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Sequence identity between different
SDR enzymes is typically in the 15-30% range; they
catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P)-binding motif and an altered
active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 337
Score = 29.6 bits (67), Expect = 6.0
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 23/63 (36%)
Query: 641 DFPSYLECQEKVDEAYCDQKRWTR-------------MSIMNTA---GSSKFSSDRTIQE 684
D P+YL +E + R+ + + G+SK ++D+ +QE
Sbjct: 131 DLPNYLPLEE-------LETRYELAPEGWSPAGISESFPLDFSHSLYGASKGAADQYVQE 183
Query: 685 YAR 687
Y R
Sbjct: 184 YGR 186
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 29.6 bits (67), Expect = 6.9
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 219 SLQDIIARFEKRSGANVNW 237
S+QDIIAR+++ G NV W
Sbjct: 57 SIQDIIARYKRMKGYNVLW 75
>gnl|CDD|184308 PRK13761, PRK13761, hypothetical protein; Provisional.
Length = 248
Score = 29.0 bits (66), Expect = 7.6
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 256 CIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALE 296
+P + +LK +E I + Y N L EAL+
Sbjct: 200 AVPNMTEYARELKKKDREELEEIVEN---YDNKKNLSEALK 237
>gnl|CDD|218418 pfam05076, SUFU, Suppressor of fused protein (SUFU). SUFU,
encoding the human orthologue of Drosophila suppressor
of fused, appears to have a conserved role in the
repression of Hedgehog signaling. SUFU exerts its
repressor role by physically interacting with GLI
proteins in both the cytoplasm and the nucleus. SUFU has
been found to be a tumour-suppressor gene that
predisposes individuals to medulloblastoma by modulating
the SHH signaling pathway. Genomic contextual analysis
of bacterial SUFU versions revealed that they are
immunity proteins against diverse nuclease toxins in
polymorphic toxin systems.
Length = 168
Score = 28.4 bits (64), Expect = 7.9
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 15/56 (26%)
Query: 366 STDVVPDDELENCDEEGGPV---------DEELESAQEDGV------LEEESTDVV 406
+ + D EL D GG V +EELE A+E+G LEE D+
Sbjct: 109 TAPFLFDPELPELDTPGGKVNFLQLVPITEEELEFAKENGAEALLELLEEGGIDIT 164
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 29.5 bits (67), Expect = 8.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 219 SLQDIIARFEKRSGANVNW 237
+LQDI+AR+++ G NV W
Sbjct: 57 TLQDILARYKRMRGYNVLW 75
>gnl|CDD|201127 pfam00273, Serum_albumin, Serum albumin family.
Length = 178
Score = 28.5 bits (64), Expect = 8.6
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 11/44 (25%)
Query: 565 QEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK 608
Q++GE F +A + + P A FEEV K VK
Sbjct: 9 QKLGERVF-----KALALIRF------SQKFPKATFEEVSKLVK 41
>gnl|CDD|99733 cd00378, SHMT, Serine-glycine hydroxymethyltransferase (SHMT). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). SHMT
carries out interconversion of serine and glycine; it
catalyzes the transfer of hydroxymethyl group of N5,
N10-methylene tetrahydrofolate to glycine resulting in
the formation of serine and tetrahydrofolate. Both
eukaryotic and prokaryotic SHMT enzymes form tight
obligate homodimers; the mammalian enzyme forms a
homotetramer comprising four pyridoxal phosphate-bound
active sites.
Length = 402
Score = 29.1 bits (66), Expect = 9.6
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 452 EMSAVERKAK-FVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 497
+ A+E+ A F P++ + G A+ + KR + +VGA + D
Sbjct: 149 DYDALEKMALEFKPKLIVAGASAYPRPIDFKRFREIADEVGAYLLVD 195
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.398
Gapped
Lambda K H
0.267 0.0802 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,630,818
Number of extensions: 3716071
Number of successful extensions: 3354
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3308
Number of HSP's successfully gapped: 55
Length of query: 698
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 594
Effective length of database: 6,324,786
Effective search space: 3756922884
Effective search space used: 3756922884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.5 bits)