RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 005402
(698 letters)
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH;
1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB:
2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A*
3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A*
1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Length = 824
Score = 556 bits (1435), Expect = 0.0
Identities = 162/344 (47%), Positives = 222/344 (64%), Gaps = 8/344 (2%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDS 60
+EF GR L N + NL L A EA +LG +E + E DA LGNGGLGRLA+CFLDS
Sbjct: 76 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 135
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 136 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 195
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S G + W+ + + A+ YD P+PGY+ +RLWS DF+L FN G + +
Sbjct: 196 EHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFNVGGYIQ 253
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANV----- 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+
Sbjct: 254 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 313
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEAL 295
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNHTVLPEAL
Sbjct: 314 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEAL 373
Query: 296 EKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEK 339
E+W L++ LLPRH++II I++ ++ + + + D D L +
Sbjct: 374 ERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFP-GDVDRLRR 416
Score = 483 bits (1245), Expect = e-161
Identities = 133/327 (40%), Positives = 195/327 (59%), Gaps = 25/327 (7%)
Query: 387 EELESAQEDGVLEEESTDV--------VSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLM 438
+L S +D + V ++++ + ++P+++FD+QVKRIHEYKRQL+
Sbjct: 508 RKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLL 567
Query: 439 NILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 498
N L ++ Y ++K+ E VPR + GGKA Y AK I+K IT +G VNHDP
Sbjct: 568 NCLHVITLYNRIKK----EPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDP 623
Query: 499 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG 558
+GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DG
Sbjct: 624 VVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDG 683
Query: 559 ANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFVPDARFEEVKKFVKSGVFGSYN 616
ANVE+ +E GEENFF+FG R ++ L + ++ + ++ + + SG F
Sbjct: 684 ANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQ 743
Query: 617 ---YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGS 673
+ +++ L + D F V D+ Y++CQE+V Y + + WTRM I N A S
Sbjct: 744 PDLFKDIVNMLMHH------DRFKVFADYEEYVKCQERVSALYKNPREWTRMVIRNIATS 797
Query: 674 SKFSSDRTIQEYARDIWNI--IPVELP 698
KFSSDRTI +YAR+IW + LP
Sbjct: 798 GKFSSDRTIAQYAREIWGVEPSRQRLP 824
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex,
trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP:
c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A*
2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Length = 796
Score = 550 bits (1421), Expect = 0.0
Identities = 143/349 (40%), Positives = 196/349 (56%), Gaps = 13/349 (3%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDS 60
MEFL GR N + NLG ++L +L +++ +E D ALGNGGLGRLA+CFLDS
Sbjct: 66 MEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDS 125
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MAT+ A GYGL Y+YGLF+Q Q E +DW PW + V GK+
Sbjct: 126 MATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGKV 185
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
DG+ W I A+D+P+ GY+ LRLW + FDL+ FN GD +
Sbjct: 186 TK--DGR--WEPEFTITGQAWDLPVVGYRNGVAQPLRLWQAT-HAHPFDLTKFNDGDFLR 240
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEF 240
A + NAEK+ +LYP D + EGK LRL QQY C+ S+ DI+ R E
Sbjct: 241 AEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHLAGR---KLHEL 297
Query: 241 PEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSF 300
+ +Q+NDTHPT+ IPEL+R+LID +SW +AW IT +T AYTNHT++PEALE+W
Sbjct: 298 ADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDV 357
Query: 301 ELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILEN 349
+L++ LLPRHM+II I+ + + D + K ++ +
Sbjct: 358 KLVKGLLPRHMQIINEINTRFKTLVEKTWP-GDEKVWAK----LAVVHD 401
Score = 473 bits (1221), Expect = e-157
Identities = 134/319 (42%), Positives = 195/319 (61%), Gaps = 21/319 (6%)
Query: 387 EELESAQEDGVLEEESTDV--------VSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLM 438
LE +D ++ ++ F+K +TG ++P A+FDIQ+KR+HEYKRQ +
Sbjct: 484 INLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHL 543
Query: 439 NILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 498
N+L I+ YK+++E +A VPRV +FG KA Y AK I+ I V +N+DP
Sbjct: 544 NLLHILALYKEIRENP----QADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDP 599
Query: 499 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG 558
+GD LKV+F+PDY VS AE LIPA+++S+ ISTAG EASGT NMK A+NG + +GTLDG
Sbjct: 600 LVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDG 659
Query: 559 ANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFVPDARFEEVKKFVKSGVFGSYN 616
ANVEI ++VGEEN F+FG ++ + + D + V K ++SG + +
Sbjct: 660 ANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGD 719
Query: 617 ---YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGS 673
+D+++ S+ G D +LV DF +Y+E Q++VD Y DQ+ WTR +I+NTA
Sbjct: 720 KHAFDQMLHSI----GKQGGDPYLVMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARC 775
Query: 674 SKFSSDRTIQEYARDIWNI 692
FSSDR+I++Y IW
Sbjct: 776 GMFSSDRSIRDYQARIWQA 794
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form,
glycosyltransferase; HET: PLP; 2.80A {Saccharomyces
cerevisiae} SCOP: c.87.1.4
Length = 879
Score = 549 bits (1418), Expect = 0.0
Identities = 185/358 (51%), Positives = 230/358 (64%), Gaps = 25/358 (6%)
Query: 1 MEFLQGRALLNAIGNLGLTGA-------------YAEALSKLGQSLENVVSQEPDAALGN 47
+EFL GRAL NA+ N+ + AL +LG LE+V+ QEPDA LGN
Sbjct: 104 LEFLMGRALDNALINMKIEDPEDPAASKGKPREMIKGALDELGFKLEDVLDQEPDAGLGN 163
Query: 48 GGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDG-QEEVAEDWLELGNPWEIE 106
GGLGRLA+CF+DSMAT PAWGYGLRY+YG+F Q+I DG Q E + WL GNPWEIE
Sbjct: 164 GGLGRLAACFVDSMATEGIPAWGYGLRYEYGIFAQKI-IDGYQVETPDYWLNSGNPWEIE 222
Query: 107 RNDVSYPVKFYGKIVPGSDGK-----SHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWST 161
RN+V PV FYG + GK S WIGGE + AVAYD P+PG+KT NLRLW
Sbjct: 223 RNEVQIPVTFYGYVDRPEGGKTTLSASQWIGGERVLAVAYDFPVPGFKTSNVNNLRLWQA 282
Query: 162 MVPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQ 221
P+ +FDL+ FN GD+ + AE I +LYP D +GK LRLKQQY C+ASL
Sbjct: 283 R-PTTEFDLNKFNNGDYKNSVAQQQRAESITAVLYPNDNFAQGKELRLKQQYFWCAASLH 341
Query: 222 DIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQR 281
DI+ RF+K W EFP++VA+Q+NDTHPTL I EL R+L+DL+ L W EAW+I +
Sbjct: 342 DILRRFKKSKR---PWTEFPDQVAIQLNDTHPTLAIVELQRVLVDLEKLDWHEAWDIVTK 398
Query: 282 TVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEK 339
T AYTNHTV+ EALEKW L LLPRH+EII I+ + + ++ D DLL +
Sbjct: 399 TFAYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFFLEDVAKKFP-KDVDLLSR 455
Score = 472 bits (1217), Expect = e-156
Identities = 145/332 (43%), Positives = 195/332 (58%), Gaps = 28/332 (8%)
Query: 387 EELESAQEDGVLEEESTDV--------VSFIKEKT------GYSVSPDAMFDIQVKRIHE 432
+LE ED ++ V V IK++ D +FD+QVKRIHE
Sbjct: 552 TQLEKYVEDKEFLKKWNQVKLNNKIRLVDLIKKENDGVDIINREYLDDTLFDMQVKRIHE 611
Query: 433 YKRQLMNILGIVYRYKKMKEM-----SAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFI 487
YKRQ +N+ GI+YRY MK M S E K+ +V IFGGK+ Y AK I+K I
Sbjct: 612 YKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLI 671
Query: 488 TDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAM 547
V VN+D I LLKV+FV DYNVS AE++IPAS+LS+HISTAG EASGTSNMKF M
Sbjct: 672 NCVADIVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVM 731
Query: 548 NGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFV 607
NG ++IGT+DGANVEI +E+GE+N FLFG + + LR + + V ++
Sbjct: 732 NGGLIIGTVDGANVEITREIGEDNVFLFGNLSENVEELRYNHQYHPQDLPSSLDSVLSYI 791
Query: 608 KSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQK-RWT 663
+SG F N + L+ S++ + DY+LV DF SYL E VD+ + +Q+ W
Sbjct: 792 ESGQFSPENPNEFKPLVDSIKYH-----GDYYLVSDDFESYLATHELVDQEFHNQRSEWL 846
Query: 664 RMSIMNTAGSSKFSSDRTIQEYARDIWNIIPV 695
+ S+++ A FSSDR I+EY+ IWN+ PV
Sbjct: 847 KKSVLSLANVGFFSSDRCIEEYSDTIWNVEPV 878
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence,
starch degrading, transferase, glycosyltransferase; HET:
PLP; 1.9A {Corynebacterium callunae}
Length = 796
Score = 537 bits (1385), Expect = 0.0
Identities = 144/349 (41%), Positives = 188/349 (53%), Gaps = 25/349 (7%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDS 60
EFL GRALLN + NLGL A A +LG L +++ E DAALGNGGLGRLA+CFLDS
Sbjct: 67 AEFLMGRALLNNLTNLGLVDEAAAATRELGHELTDILEIENDAALGNGGLGRLAACFLDS 126
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
T +YP GYGL Y++GLF+Q + Q E + W E P+ I R V F
Sbjct: 127 AVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWREEEYPFTIRRASDQLVVCF---- 182
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
+A+ YD+PI GY T LRLW P E+FD AFNA T
Sbjct: 183 -----------DDMKTRAIPYDMPITGYGTHNVGTLRLWKAE-PWEEFDYDAFNAQRFTD 230
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEF 240
A IC +LYP D + EGK LR++QQY SASLQ +I + F
Sbjct: 231 AIIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQAMIQDHLAHHK---DLSNF 287
Query: 241 PEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSF 300
E +VQ+NDTHP L IPEL+R+L+D + W+E+W I +T AYTNHTVL EALE+W
Sbjct: 288 AEFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDE 347
Query: 301 ELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILEN 349
++ Q+L R EII ID ++ D + + + +++
Sbjct: 348 QIFQQLFWRVWEIIAEIDRRFRLERAADGL--DEETINR----MAPIQH 390
Score = 480 bits (1238), Expect = e-160
Identities = 131/322 (40%), Positives = 189/322 (58%), Gaps = 17/322 (5%)
Query: 387 EELESAQEDGVLEEESTDV--------VSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLM 438
++L S +D + EE + +I E+ G + P+++FD+Q+KR+HEYKRQLM
Sbjct: 474 KKLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIEIDPESIFDVQIKRLHEYKRQLM 533
Query: 439 NILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 498
N L ++ Y ++KE + R IFG KA YV+AK I+K I + VN+DP
Sbjct: 534 NALYVLDLYFRIKE----DGLTDIPARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDP 589
Query: 499 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG 558
E+ LLKV+FV +YNVS AE ++PAS++S+ ISTAG EASGTSNMKF MNG + +GT+DG
Sbjct: 590 EVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDG 649
Query: 559 ANVEIRQEVGEENFFLFGARAHEIAGLRKE-RSEGKFVPDARFEEVKKFVKSGVFGSYN- 616
ANVEI VGEEN ++FGAR E+ LR+ + + + + +G N
Sbjct: 650 ANVEIVDSVGEENAYIFGARVEELPALRESYKPYELYETVPGLKRALDALDNGTLNDNNS 709
Query: 617 --YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYC-DQKRWTRMSIMNTAGS 673
+ +L SL G +D + V DF Y E ++++ Y D W RM+ +N S
Sbjct: 710 GLFYDLKHSLIHGYGKDASDTYYVLGDFADYRETRDRMAADYASDPLGWARMAWINICES 769
Query: 674 SKFSSDRTIQEYARDIWNIIPV 695
+FSSDRTI++YA +IW + P
Sbjct: 770 GRFSSDRTIRDYATEIWKLEPT 791
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 75.7 bits (185), Expect = 4e-14
Identities = 74/594 (12%), Positives = 166/594 (27%), Gaps = 176/594 (29%)
Query: 73 LRYKYG----LFKQRITKDGQEEVAEDWLE-----------LGNPWEIERNDV------S 111
+Y+Y +F+ + + +D + + + + S
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 112 YPVKFYGKIVPGSDGKSH-WIGGEDIKAVAYDIPIPGYKTKTTINLR--LWSTMVPSEDF 168
+ K V ++ ++ + + + P T+ I R L++ +
Sbjct: 74 KQEEMVQKFVEEVLRINYKFL----MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 169 DLSAFNAGDHTKAAEALTNAEKICYILYPG---------------DESVE----GKV--- 206
++S + K +AL +L G V+ K+
Sbjct: 130 NVSRLQ--PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 207 ---------LRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDT-HPTLC 256
L+ L + +R + S + ++ + + C
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-C 246
Query: 257 IPELIRILIDLKGLSW-KEAWN---------ITQR--------TVAYTNHTVL------- 291
L+ +L+++ +AWN +T R + A T H L
Sbjct: 247 ---LL-VLLNV----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 292 --PEALE---KW----SFEL---MQKLLPRHMEII-----EMID----------EELVHT 324
E K+ +L + PR + II + + ++L
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 325 IVSEYGTADPDLLEKRLKETRIL-ENVDLPA-TFADLFVKTKESTDVVPDDELEN----- 377
I S +P K + + +P + ++ +S +V ++L
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 378 CDEEGGPV------DEELESAQEDGVLEEESTDVVSFIKEKTGYSVSPDAMFDIQVKRIH 431
+ + E + + L D + K + P + +
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY----FY 474
Query: 432 EYKRQLMNILGIVY------RYKKMKEMSAV-------ERKAKFVPRVCIFGGKAFATYV 478
+ I + ++M V E+K + G T
Sbjct: 475 SH---------IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 479 QAKRIVKFITDVGATVNHDPE----IGDLLKVIFVPDYNVSVAELLIPASELSQ 528
Q K +I D +DP+ + +L F+P ++ + ++L +
Sbjct: 526 QLKFYKPYICD------NDPKYERLVNAILD--FLPKIEENL--ICSKYTDLLR 569
Score = 56.0 bits (134), Expect = 4e-08
Identities = 51/349 (14%), Positives = 115/349 (32%), Gaps = 86/349 (24%)
Query: 85 TKDGQEEVAEDWLELGN---PWEIERNDVSYP--VKFYGKIVPGSDGKSHWIGGEDIKAV 139
T D + + +L+ P E+ + P + + + DG + W ++ K V
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTN---PRRLSIIAESI--RDGLATW---DNWKHV 350
Query: 140 AYDIPIPGYKTKTTINLRLWSTMVPSED----FDLSAFNAGDHTKAAEALTNAEKICYIL 195
D K T I L + + P+E LS F L + ++
Sbjct: 351 NCD------KLTTIIESSL-NVLEPAEYRKMFDRLSVFP--PSAHIPTIL-----LS-LI 395
Query: 196 YPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTL 255
+ + + ++ + K S +E + + + L
Sbjct: 396 WFDVIKSD----------------VMVVVNKLHKYSLVEKQPKES----TISIPSIYLEL 435
Query: 256 CIP-----ELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRH 310
+ L R ++D +NI + + + ++P L+++ + + H
Sbjct: 436 KVKLENEYALHRSIVD--------HYNIPK---TFDSDDLIPPYLDQYFYS----HIGHH 480
Query: 311 MEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILENV--DLPATFADLFVKTKESTD 368
++ IE + + +V + D LE++++ N + T L D
Sbjct: 481 LKNIEHPERMTLFRMV--F--LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 369 VVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVV--SFIKEKTGY 415
P E + + L +E+ ++ + TD++ + + E
Sbjct: 537 NDPKYERLVNA-----ILDFLPKIEEN-LICSKYTDLLRIALMAEDEAI 579
Score = 51.4 bits (122), Expect = 1e-06
Identities = 71/483 (14%), Positives = 134/483 (27%), Gaps = 139/483 (28%)
Query: 333 DPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENC--DEEGGPVDEELE 390
D + E + + IL F D FV + DV D ++ EE +D +
Sbjct: 8 DFETGEHQYQYKDILS------VFEDAFVDNFDCKDV--QDMPKSILSKEE---IDHIIM 56
Query: 391 SAQED-------GVLEEESTDVVS-FIKE--KTGYS--VSPDAMFDIQ----VKRIHEYK 434
S L + ++V F++E + Y +SP Q + E +
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 435 RQLMNILGI-----VYRYKKMKEMSAVERKAKFVPRVCIFG----GK---AFATYVQAKR 482
+L N + V R + ++ + + V I G GK A + K
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 483 IVKFITDVG-ATVNHDPEIGDLLKVI------FVPDYNV---SVAELLIPASELSQHIST 532
K + + + +L+++ P++ + + + + +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 533 AGMEASGT---------SNMKF--AMN-GC-ILIGTLDGANVEIRQEVGEENFFLFGARA 579
N K A N C IL+ T + + L
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL----D 292
Query: 580 HEIAGLRKERSEGKFVPDARF---------EEVKK-----------FVKSGV-----FGS 614
H L + + ++ EV ++ G+ +
Sbjct: 293 HHSMTLTPDEVKSLL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 615 YNYDELM----GSLEGNEGFGQADYFLVGKD---FP-----------------SYLECQE 650
N D+L SL E F FP +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMF---DRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 651 KVDE--AYCDQKRW---TRMSIMNTAGSSKFSSD-------RTIQEY----ARDIWNIIP 694
V++ Y ++ + +SI + K + + Y D ++IP
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 695 VEL 697
L
Sbjct: 467 PYL 469
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 1e-07
Identities = 83/484 (17%), Positives = 136/484 (28%), Gaps = 172/484 (35%)
Query: 343 ETRILENVDLPAT--FA-----DLFVKTKESTDVVPDDELENCDEEGGPVD--------- 386
E +L +P F + F K P + DE P +
Sbjct: 17 EHVLL----VPTASFFIASQLQEQFNKILPE----PTEGFAADDEPTTPAELVGKFLGYV 68
Query: 387 ----EELESAQEDGVLEE-----EST-----DVVSFIKEKTGYSVSPDAMFDIQVKRIHE 432
E + Q D VL E+ D+ + + D + I
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK---LLQENDTTLVKTKELIKN 125
Query: 433 YK--RQLMNILGIVYRYKKMKE----MSAVERKAKFVPRVCIFGG------------KAF 474
Y R + + K + E A+ V IFGG +
Sbjct: 126 YITARIMAKR-----PFDKKSNSALFRAVGEGNAQLVA---IFGGQGNTDDYFEELRDLY 177
Query: 475 ATY---VQ------AKRIVKFITDVGATVNHDPEIGDLLKVIFVP------DYNVSVAEL 519
TY V A+ + + I + ++L+ + P DY +S+ +
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP-I 236
Query: 520 LIPASELSQ--HISTAGMEASGTS--NMKFAMNGCILIGTLDG--ANVEIRQEVGEENFF 573
P + Q H + G + ++ + G G G V I + E+FF
Sbjct: 237 SCPLIGVIQLAHYVVTA-KLLGFTPGELRSYLKG--ATGHSQGLVTAVAIAETDSWESFF 293
Query: 574 ---------LF--GARAHEIAGLR----------KERSEGKFVP-------DARFEEVKK 605
LF G R +E E +EG VP + E+V+
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG--VPSPMLSISNLTQEQVQD 351
Query: 606 FVKSGVFGSYNYDELMGSLEGNE--------GFGQADYFLV-GKDFPSYLE--CQ--EKV 652
+V ++ L + G A +V G P L K
Sbjct: 352 YV----------NKTNSHLPAGKQVEISLVNG---AKNLVVSG--PPQSLYGLNLTLRKA 396
Query: 653 D-EAYCDQKRWTRMSIMNTAGSSKF--------SS------DRTIQEYARDIWNI----- 692
+ DQ R S S++F S D ++ ++ +
Sbjct: 397 KAPSGLDQSR-IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 693 -IPV 695
IPV
Sbjct: 456 QIPV 459
Score = 40.0 bits (93), Expect = 0.003
Identities = 41/260 (15%), Positives = 78/260 (30%), Gaps = 93/260 (35%)
Query: 172 AFNAGD-HTKAA------EALTNAEKICYILYPGDESVEGKVLRLKQQYT-LCSASLQDI 223
+N D H K + + N I + G +GK R+++ Y+ + ++ D
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG---EKGK--RIRENYSAMIFETIVDG 1699
Query: 224 IARFEK------RSGANVNWEEFPEKVAVQMNDTH---PTLCIPELIRILIDLKGLSWKE 274
+ EK + + + + ++ T P L + E DLK
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRS-EKGL---LSATQFTQPALTLMEKA-AFEDLK------ 1748
Query: 275 AWNITQRTVAYTNHTVLPE--AL----EKWSFE-----------LMQKLLPRH------- 310
+ + + H+ L E AL + S E MQ +PR
Sbjct: 1749 SKGLIPADATFAGHS-LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 311 -M------EIIEMIDEELVHTIVSEYGTADPDLLE------------------------- 338
M + +E + +V G L+E
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 339 --KRLKETRILENVDLPATF 356
+K +I + ++L +
Sbjct: 1868 VLNFIKLQKI-DIIELQKSL 1886
Score = 37.0 bits (85), Expect = 0.024
Identities = 71/508 (13%), Positives = 148/508 (29%), Gaps = 192/508 (37%)
Query: 128 SHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWS-------TMVPSEDFDLSAFNAGDHTK 180
+ ++ G DI A+A + T + + P + SA +
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-----FR 147
Query: 181 AAEALTNAEKICYILYPG--------DESVEGKVLRLKQQYTLCSASLQDIIARFEKR-- 230
A ++ ++ G +E L+ Y + D+I +
Sbjct: 148 AVGE--GNAQL-VAIFGGQGNTDDYFEE--------LRDLYQTYHVLVGDLIKFSAETLS 196
Query: 231 --------------SGANV-NWEEFPEKVAVQMNDTHPT--LC-----IPELIRILIDLK 268
G N+ W E P +T L P LI +
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPS-------NTPDKDYLLSIPISCP-----LIGVI 244
Query: 269 GLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSE 328
L+ + +T + + +T P L ++ ++ ++E
Sbjct: 245 QLAH---YVVTAKLLGFT-----PGEL----RSYLKGATGHSQGLV-------TAVAIAE 285
Query: 329 YGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVP---------DDELENCD 379
+ + K +L F F+ + P +D LEN
Sbjct: 286 TDSWE-SFFVSVRKAITVL--------F---FIGV-RCYEAYPNTSLPPSILEDSLEN-- 330
Query: 380 EEGGP-----V----DEELES--AQEDGVLEEESTDVVSFIKEKTGYSVS--PDAMFDIQ 426
EG P + E+++ + + L +S + VS P +++
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY--- 387
Query: 427 VKRIHEYKRQLMNILGIVYRYKKMKEMSAVER-KAKFVPRVCIFGGKAFATYVQAKRIVK 485
G+ +K K S +++ + F ++R +K
Sbjct: 388 ---------------GLNLTLRKAKAPSGLDQSRIPF-----------------SERKLK 415
Query: 486 FITDVGATVNHDPEIGDLLKVIFVPDYNVSV---AELLIPASE-LSQHISTAGMEASGTS 541
F F+P V+ + LL+PAS+ +++ + + +
Sbjct: 416 FSNR------------------FLP---VASPFHSHLLVPASDLINKDLVKNNVSFNA-K 453
Query: 542 NMKFAMNGCILIGTLDGANVEIRQEVGE 569
+++ + T DG++ +R G
Sbjct: 454 DIQIP-----VYDTFDGSD--LRVLSGS 474
Score = 34.6 bits (79), Expect = 0.12
Identities = 24/120 (20%), Positives = 33/120 (27%), Gaps = 38/120 (31%)
Query: 145 IPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAAEALTNA-EKICYILYPGDESVE 203
IP + K + R P F H+ L A + I L + S
Sbjct: 407 IPFSERKLKFSNRFLPVASP--------F----HS---HLLVPASDLINKDLVKNNVSFN 451
Query: 204 GKVLR-----------LKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTH 252
K ++ L+ S + D I R V WE Q TH
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR------LPVKWET-----TTQFKATH 500
Score = 33.9 bits (77), Expect = 0.24
Identities = 29/108 (26%), Positives = 40/108 (37%), Gaps = 15/108 (13%)
Query: 110 VSYPVKFYGKI-VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDF 168
V+ P F+ + VP SD + + ++ A DI IP Y T +LR+ S +
Sbjct: 423 VASP--FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 169 DLSAFNAGDHTKAA--EALTNAEKICYILY--PGDESVEGK-VLRLKQ 211
D E T K +IL PG S G R K
Sbjct: 481 DCII------RLPVKWETTTQF-KATHILDFGPGGASGLGVLTHRNKD 521
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.25
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 28/89 (31%)
Query: 292 PEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDL----------LEKRL 341
PE++ KW E Q+ + ++ +D A DL +EK
Sbjct: 84 PESIRKWREE--QR------KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 342 KETRILENVDLPATFADLFVKTKESTDVV 370
RI + F + ++ D++
Sbjct: 136 INNRIAD---------KAFYQQPDA-DII 154
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Length = 185
Score = 29.3 bits (65), Expect = 2.7
Identities = 12/79 (15%), Positives = 27/79 (34%)
Query: 355 TFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTG 414
+ + K + +V D++ + E + ++ L D + IK
Sbjct: 97 VYENGRFIEKRAFEVKEGDKVLVSELELVEQSSSSQDNPKNENLGSPEHDQLLEIKNIKY 156
Query: 415 YSVSPDAMFDIQVKRIHEY 433
+ D +F + K+ H
Sbjct: 157 VRANDDFVFSLNAKKYHNV 175
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 3.8
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 24 EALSKLGQSLENVVSQEPDAA 44
+AL KL SL+ D+A
Sbjct: 20 QALKKLQASLK---LYADDSA 37
>2hp0_A IDS-epimerase; MMGE/PRPD fold, 6 helix bundle, chorismate mutase
like, ISOM; HET: MSE CSO; 1.50A {Agrobacterium
tumefaciens} PDB: 2hp3_A*
Length = 466
Score = 29.7 bits (67), Expect = 3.8
Identities = 6/38 (15%), Positives = 10/38 (26%), Gaps = 2/38 (5%)
Query: 80 FKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFY 117
E+ + G PW I + K +
Sbjct: 253 ILAMYGAQPGPELFNAMQKFGTPWAIIAPGLYK--KSW 288
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding
protein, structural genomics center for infectious
disease; 2.10A {Bartonella henselae}
Length = 193
Score = 28.3 bits (63), Expect = 7.0
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 523 ASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQ 565
A H+ T + G +M ++N ILIG L GA+ EIR+
Sbjct: 2 AHHHHHHMGTLEAQTQGPGSMAGSLNKVILIGNL-GADPEIRR 43
>3nuw_A 2-OXO-3-deoxygalactonate kinase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE; 2.09A {Klebsiella pneumoniae}
PDB: 3r1x_A*
Length = 295
Score = 28.5 bits (63), Expect = 7.6
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 13 IGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLA 54
+ LT Y +A + +G+ + V A G+ +A
Sbjct: 253 VAGSSLTSRYQQAFAAIGREVSAVAGD--TAFQ--TGIRSIA 290
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 28.3 bits (64), Expect = 8.4
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 9/43 (20%)
Query: 194 ILYPG--------DESVEGKVLRLKQQYTLCSASL-QDIIARF 227
+L PG K+++ KQ L + L Q ++
Sbjct: 239 VLSPGLRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHEL 281
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 28.3 bits (64), Expect = 9.3
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 309 RHMEIIEMIDEELVHTIVSEYGTA-DPDLLEKRLKETRI 346
R E+ + + + G DP+ + + LK R
Sbjct: 88 RVAEMAALHGLD-PEVLDFPPGEPVDPEAVARALKRRRY 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 28.1 bits (63), Expect = 9.3
Identities = 14/55 (25%), Positives = 19/55 (34%)
Query: 357 ADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKE 411
++F DD E DEE +EE ES + EE + E
Sbjct: 326 REVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKELADE 380
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 28.4 bits (64), Expect = 9.6
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 309 RHMEIIEMIDEELVHTIVSEYGTA-DPDLLEKRLKETRI 346
EI E VH + E+GT DP+ + + +K+ +
Sbjct: 100 LLTEIAERYGAN-VHMLECEWGTVFDPEDIIREIKKVKP 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.398
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,196,478
Number of extensions: 718397
Number of successful extensions: 1506
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1473
Number of HSP's successfully gapped: 35
Length of query: 698
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 598
Effective length of database: 3,909,693
Effective search space: 2337996414
Effective search space used: 2337996414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.2 bits)