RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 005402
(698 letters)
>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 876
Score = 702 bits (1812), Expect = 0.0
Identities = 328/781 (41%), Positives = 430/781 (55%), Gaps = 92/781 (11%)
Query: 1 MEFLQGRALLNAIGNLGLTGA-------------YAEALSKLGQSLENVVSQEPDAALGN 47
+EFL GRAL NA+ N+ + AL +LG LE+V+ QEPDA LGN
Sbjct: 101 LEFLMGRALDNALINMKIEDPEDPAASKGKPREMIKGALDELGFKLEDVLDQEPDAGLGN 160
Query: 48 GGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIER 107
GGLGRLA+CF+DSMAT PAWGYGLRY+YG+F Q+I Q E + WL GNPWEIER
Sbjct: 161 GGLGRLAACFVDSMATEGIPAWGYGLRYEYGIFAQKIIDGYQVETPDYWLNSGNPWEIER 220
Query: 108 NDVSYPVKFYGKIVPGSDGK-----SHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTM 162
N+V PV FYG + GK S WIGGE + AVAYD P+PG+KT NLRLW
Sbjct: 221 NEVQIPVTFYGYVDRPEGGKTTLSASQWIGGERVLAVAYDFPVPGFKTSNVNNLRLWQAR 280
Query: 163 VPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQD 222
P+ +FDL+ FN GD+ + AE I +LYP D +GK LRLKQQY C+ASL D
Sbjct: 281 -PTTEFDLNKFNNGDYKNSVAQQQRAESITAVLYPNDNFAQGKELRLKQQYFWCAASLHD 339
Query: 223 IIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRT 282
I+ RF+K W EFP++VA+Q+NDTHPTL I EL R+L+DL+ L W EAW+I +T
Sbjct: 340 ILRRFKKSKR---PWTEFPDQVAIQLNDTHPTLAIVELQRVLVDLEKLDWHEAWDIVTKT 396
Query: 283 VAYTNHTVLPEALEKWSFELMQK----LLPRHMEIIEMIDEELVHT------IVSEYGTA 332
AYTNHTV+ EALEKW L L +I E++ ++S
Sbjct: 397 FAYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFFLEDVAKKFPKDVDLLSRISII 456
Query: 333 DPDLLEKRLKET----RILENVDLPATFADLFVKTKESTDVVPD---------------- 372
+ + E++++ V+ +KT D +
Sbjct: 457 EENSPERQIRMAFLAIVGSHKVNGVVELHSELIKTTIFKDFIKFYGPSKFVNVTNGITPR 516
Query: 373 --------------DELENCDEEGGPVD----EELESAQEDGVLEEESTDV--------V 406
E N E +D +LE ED ++ V V
Sbjct: 517 RWLKQANPSLAKLISETLNDPTEEYLLDMAKLTQLEKYVEDKEFLKKWNQVKLNNKIRLV 576
Query: 407 SFIKEKT------GYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEM-----SA 455
IK++ D +FD+QVKRIHEYKRQ +N+ GI+YRY MK M S
Sbjct: 577 DLIKKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASI 636
Query: 456 VERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVS 515
E K+ +V IFGGK+ Y AK I+K I V VN+D I LLKV+FV DYNVS
Sbjct: 637 EEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVS 696
Query: 516 VAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 575
AE++IPAS+LS+HISTAG EASGTSNMKF MNG ++IGT+DGANVEI +E+GE+N FLF
Sbjct: 697 KAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLF 756
Query: 576 GARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADY 635
G + + LR + + V +++SG F N +E ++ + G DY
Sbjct: 757 GNLSENVEELRYNHQYHPQDLPSSLDSVLSYIESGQFSPENPNEFKPLVDSIKYHG--DY 814
Query: 636 FLVGKDFPSYLECQEKVDEAYCDQK-RWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 694
+LV DF SYL E VD+ + +Q+ W + S+++ A FSSDR I+EY+ IWN+ P
Sbjct: 815 YLVSDDFESYLATHELVDQEFHNQRSEWLKKSVLSLANVGFFSSDRCIEEYSDTIWNVEP 874
Query: 695 V 695
V
Sbjct: 875 V 875
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 824
Score = 686 bits (1771), Expect = 0.0
Identities = 296/762 (38%), Positives = 420/762 (55%), Gaps = 79/762 (10%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDS 60
+EF GR L N + NL L A EA +LG +E + E DA LGNGGLGRLA+CFLDS
Sbjct: 76 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 135
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 136 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 195
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S + W+ + + A+ YD P+PGY+ +RLWS DF+L FN G + +
Sbjct: 196 EHTSQ-GAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWS-AKAPNDFNLKDFNVGGYIQ 253
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEK-----RSGANV 235
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+ R
Sbjct: 254 AVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRT 313
Query: 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEAL 295
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNHTVLPEAL
Sbjct: 314 NFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEAL 373
Query: 296 EKWSFELMQKLLPRH----------------------------MEIIEMIDEELV----- 322
E+W L++ LLPRH M ++E + +
Sbjct: 374 ERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHL 433
Query: 323 --------------HTIVSEYGTADPDLLEKRLKETRILENVDLP-------ATFADLFV 361
H+ + + + K + A++
Sbjct: 434 CIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIA 493
Query: 362 KTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVSFIKEKTGYSVSPDA 421
+ + D+L VD+E V +E ++++ + ++P++
Sbjct: 494 ERIGEEYISDLDQLRKLLSY---VDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNS 550
Query: 422 MFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAK 481
+FD+QVKRIHEYKRQL+N L ++ Y ++K+ VPR + GGKA Y AK
Sbjct: 551 LFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNK----FVVPRTVMIGGKAAPGYHMAK 606
Query: 482 RIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTS 541
I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT
Sbjct: 607 MIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTG 666
Query: 542 NMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFVPDAR 599
NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + ++ +
Sbjct: 667 NMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYDRIPE 726
Query: 600 FEEVKKFVKSGVFGSYNYD---ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAY 656
++ + + SG F D +++ L + D F V D+ Y++CQE+V Y
Sbjct: 727 LRQIIEQLSSGFFSPKQPDLFKDIVNMLMHH------DRFKVFADYEEYVKCQERVSALY 780
Query: 657 CDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVELP 698
+ + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct: 781 KNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQR 822
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
{Escherichia coli [TaxId: 562]}
Length = 796
Score = 520 bits (1341), Expect = e-176
Identities = 224/746 (30%), Positives = 344/746 (46%), Gaps = 71/746 (9%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDS 60
MEFL GR N + NLG ++L +L +++ +E D ALGNGGLGRLA+CFLDS
Sbjct: 66 MEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDS 125
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MAT+ A GYGL Y+YGLF+Q Q E +DW PW + V GK+
Sbjct: 126 MATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGKV 185
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
DG+ W I A+D+P+ GY+ LRLW FDL+ FN GD +
Sbjct: 186 TK--DGR--WEPEFTITGQAWDLPVVGYRNGVAQPLRLWQATHA-HPFDLTKFNDGDFLR 240
Query: 181 AAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEF 240
A + NAEK+ +LYP D + EGK LRL QQY C+ S+ DI+ R E
Sbjct: 241 AEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHLA---GRKLHEL 297
Query: 241 PEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSF 300
+ +Q+NDTHPT+ IPEL+R+LID +SW +AW IT +T AYTNHT++PEALE+W
Sbjct: 298 ADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDV 357
Query: 301 ELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLF 360
+L++ LLPRHM+II I+ T+V + D + K ++
Sbjct: 358 KLVKGLLPRHMQIINEINTRF-KTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFA 416
Query: 361 VK--TKESTDVVPDDELENCDEEGGPVDEELESAQEDGV-----LEEESTDVVSFIKEKT 413
V +D+V D + +G+ +++ + + + + +
Sbjct: 417 VNGVAALHSDLVVKDLFPEYH----QLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSL 472
Query: 414 GYSVSPDAMFDIQVKRIHEYKRQLMNILGIVY-RYKKMKEMSAVERKAKFVPRVCIFGG- 471
+ D I +++ + + I ++ E V + P+
Sbjct: 473 QKEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQI 532
Query: 472 KAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFV-----PDY---------NVSVA 517
K Y + + I + + +P+ + +V P Y VA
Sbjct: 533 KRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVA 592
Query: 518 ELLIPASELSQHISTAGMEASGTSNMK--------------------------FAMNGCI 551
+++ + + + S + A+NG +
Sbjct: 593 DVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGAL 652
Query: 552 LIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKER--SEGKFVPDARFEEVKKFVKS 609
+GTLDGANVEI ++VGEEN F+FG ++ + + D + V K ++S
Sbjct: 653 TVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKELES 712
Query: 610 GVFG---SYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMS 666
G + + +D+++ S+ G D +LV DF +Y+E Q++VD Y DQ+ WTR +
Sbjct: 713 GKYSDGDKHAFDQMLHSI----GKQGGDPYLVMADFAAYVEAQKQVDVLYRDQEAWTRAA 768
Query: 667 IMNTAGSSKFSSDRTIQEYARDIWNI 692
I+NTA FSSDR+I++Y IW
Sbjct: 769 ILNTARCGMFSSDRSIRDYQARIWQA 794
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 31.0 bits (69), Expect = 0.44
Identities = 9/73 (12%), Positives = 19/73 (26%), Gaps = 9/73 (12%)
Query: 217 SASLQDIIARFEKRSGANV----NWEEFPEKV--AVQMNDTHP-TLCIPELIRILIDLKG 269
D+ R+++ G V + + Q P + D G
Sbjct: 24 EHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAG 83
Query: 270 LSWKEAWNITQRT 282
+ ++ T
Sbjct: 84 FNIS--YDNYHST 94
>d1d4oa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Cow (Bos
taurus) [TaxId: 9913]}
Length = 177
Score = 28.9 bits (65), Expect = 1.5
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 505 KVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCI 551
+I P Y + A+ P ++L + + G ++F ++
Sbjct: 20 SIIITPGYGLCAAKAQYPIADLVKM-----LSEQGK-KVRFGIHPVA 60
>d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP
{Escherichia coli [TaxId: 562]}
Length = 369
Score = 27.8 bits (60), Expect = 4.4
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 220 LQDIIARFEKRSGANVN---WEEFPEKVAVQM 248
L ++ +FEK + V ++ EK
Sbjct: 20 LAEVGKKFEKDTDPKVTVEHPDKLEEKFPQVA 51
>d2b0ja1 a.100.1.11 (A:243-344) 5,10-methenyltetrahydromethanopterin
hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii
[TaxId: 2190]}
Length = 102
Score = 26.4 bits (58), Expect = 4.6
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 535 MEASGTSNMKFAMNGCILIGTLDGANVEIRQE 566
M+ G +NM+ A++ L+GT D E
Sbjct: 55 MKEKGIANMEEALDPAALLGTADSMCFGPLAE 86
>d1jeya1 b.131.1.1 (A:254-534) Ku70 subunit middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 281
Score = 27.6 bits (61), Expect = 4.7
Identities = 16/150 (10%), Positives = 30/150 (20%), Gaps = 17/150 (11%)
Query: 102 PWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTIN------ 155
++ D+ V Y + + E + V T +
Sbjct: 7 KLKLN-KDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKR 65
Query: 156 -LRLWSTMVPSEDFDLSAFNA-GDHTKAAEALTNAEKI--------CYILYPGDESVEGK 205
S + E + D + +YP + V G
Sbjct: 66 SQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGS 125
Query: 206 VLRLKQQYTLCSASLQDIIARFEKRSGANV 235
C + R+ R
Sbjct: 126 STLFSALLIKCLEKEVAALCRYTPRRNIPP 155
>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 85
Score = 25.4 bits (56), Expect = 6.9
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 213 YTLCSASLQDIIARFEKRSGAN 234
YT + + I+ + E R+
Sbjct: 56 YTFSTPKFEPIVTQQEGRNLIQ 77
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 26.9 bits (58), Expect = 7.7
Identities = 9/79 (11%), Positives = 18/79 (22%), Gaps = 7/79 (8%)
Query: 217 SASLQDIIARFEKRSGANV----NWEEFP---EKVAVQMNDTHPTLCIPELIRILIDLKG 269
+ + D +AR+ + G +E + A + R
Sbjct: 25 TTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDL 84
Query: 270 LSWKEAWNITQRTVAYTNH 288
L I +
Sbjct: 85 LGIAYDDFIRTTEERHKKV 103
>d1a99a_ c.94.1.1 (A:) Putrescine receptor (PotF) {Escherichia coli
[TaxId: 562]}
Length = 341
Score = 26.7 bits (57), Expect = 9.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 221 QDIIARFEKRSGANVNWEEFP 241
D +A FEK +G V ++ F
Sbjct: 15 PDTVANFEKETGIKVVYDVFD 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.398
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,709,478
Number of extensions: 134846
Number of successful extensions: 342
Number of sequences better than 10.0: 1
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 24
Length of query: 698
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 606
Effective length of database: 1,144,436
Effective search space: 693528216
Effective search space used: 693528216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.8 bits)