Query 005403
Match_columns 698
No_of_seqs 206 out of 1185
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 00:22:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2olm_A Nucleoporin-like protei 100.0 5.2E-39 1.8E-43 302.5 12.1 124 2-125 3-128 (140)
2 2crr_A Stromal membrane-associ 100.0 5E-37 1.7E-41 289.4 9.1 121 4-127 9-132 (141)
3 2iqj_A Stromal membrane-associ 100.0 4.4E-37 1.5E-41 287.6 8.5 120 4-126 7-129 (134)
4 3jue_A Arfgap with coiled-coil 100.0 1.4E-33 4.7E-38 298.0 9.9 124 2-126 23-151 (368)
5 3lju_X ARF-GAP with dual PH do 100.0 4.2E-32 1.4E-36 289.8 12.6 123 4-127 14-139 (386)
6 2owa_A Arfgap-like finger doma 100.0 9E-31 3.1E-35 246.1 9.5 113 5-121 17-132 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 100.0 2.8E-30 9.6E-35 245.4 7.3 93 1-95 8-104 (149)
8 3dwd_A ADP-ribosylation factor 100.0 6.6E-30 2.3E-34 241.9 8.6 120 6-125 20-146 (147)
9 2b0o_E UPLC1; arfgap, structur 99.9 4.4E-28 1.5E-32 246.8 12.4 120 6-125 24-147 (301)
10 3lvq_E ARF-GAP with SH3 domain 99.9 4E-28 1.4E-32 261.6 9.5 121 6-126 5-129 (497)
11 1dcq_A PYK2-associated protein 99.9 1.5E-27 5.2E-32 239.9 10.4 119 9-127 2-124 (278)
12 2p57_A GTPase-activating prote 99.9 2E-27 6.7E-32 224.7 9.2 87 7-93 20-110 (144)
13 3sub_A ADP-ribosylation factor 99.9 4.3E-27 1.5E-31 225.8 9.4 88 7-94 4-95 (163)
14 3o47_A ADP-ribosylation factor 99.9 1.4E-25 4.9E-30 232.6 10.1 91 4-94 17-110 (329)
15 2cp8_A NEXT to BRCA1 gene 1 pr 84.2 0.041 1.4E-06 44.5 -3.9 29 177-205 12-40 (54)
16 1u5k_A Hypothetical protein; O 82.5 1.6 5.4E-05 43.3 5.7 56 15-83 137-196 (244)
17 2bwb_A Ubiquitin-like protein 78.0 0.11 3.8E-06 40.3 -3.4 29 177-205 10-38 (46)
18 2dah_A Ubiquilin-3; UBA domain 74.3 0.13 4.4E-06 41.2 -4.0 29 177-205 12-40 (54)
19 2dna_A Unnamed protein product 72.7 0.17 5.8E-06 42.5 -3.9 29 177-205 22-50 (67)
20 1wr1_B Ubiquitin-like protein 71.8 0.16 5.6E-06 41.2 -4.0 29 177-205 20-48 (58)
21 1vej_A Riken cDNA 4931431F19; 70.2 0.21 7.3E-06 42.6 -3.9 29 177-205 32-60 (74)
22 2cwb_A Chimera of immunoglobul 68.5 0.34 1.2E-05 44.0 -3.1 29 177-205 69-97 (108)
23 2knz_A Ubiquilin-4; cytoplasm, 68.0 0.31 1.1E-05 38.6 -3.1 29 177-205 14-42 (53)
24 2jy5_A Ubiquilin-1; UBA, alter 64.1 0.37 1.3E-05 38.1 -3.4 29 177-205 15-43 (52)
25 1gnf_A Transcription factor GA 58.5 5.6 0.00019 31.0 2.5 36 23-58 3-39 (46)
26 2vut_I AREA, nitrogen regulato 54.9 7.4 0.00025 29.9 2.6 32 25-56 2-34 (43)
27 4gat_A Nitrogen regulatory pro 53.6 9.7 0.00033 31.7 3.3 37 22-58 7-44 (66)
28 4hc9_A Trans-acting T-cell-spe 46.5 11 0.00038 34.3 2.8 33 24-56 5-38 (115)
29 3dfx_A Trans-acting T-cell-spe 43.8 9.2 0.00032 31.6 1.7 37 22-58 5-42 (63)
30 1ffk_W Ribosomal protein L37AE 43.5 18 0.0006 30.8 3.4 40 11-52 13-53 (73)
31 2kgo_A Uncharacterized protein 42.0 7.3 0.00025 35.4 0.9 32 24-55 56-88 (108)
32 2zet_C Melanophilin; complex, 41.1 13 0.00044 35.4 2.5 34 23-56 67-105 (153)
33 4glq_A Methyl-accepting chemot 40.0 14 0.00046 34.4 2.4 27 68-94 132-158 (171)
34 1tjl_A DNAK suppressor protein 39.3 10 0.00036 35.9 1.5 34 22-55 109-143 (151)
35 1d4u_A Nucleotide excision rep 38.1 7.4 0.00025 35.5 0.3 32 23-54 4-36 (111)
36 3g9m_A Glucocorticoid receptor 35.6 15 0.00053 31.8 1.9 31 23-56 1-31 (90)
37 1hcq_A Protein (estrogen recep 30.9 23 0.00078 30.5 2.1 32 22-56 2-33 (84)
38 2nll_B Protein (thyroid hormon 30.2 23 0.0008 31.5 2.2 29 25-56 2-30 (103)
39 1zbd_B Rabphilin-3A; G protein 30.0 24 0.00082 32.8 2.3 50 5-54 30-90 (134)
40 2han_B Ecdysone receptor; tran 28.8 22 0.00076 32.4 1.8 31 23-56 7-37 (119)
41 2kae_A GATA-type transcription 28.4 23 0.00077 30.0 1.6 34 23-57 7-43 (71)
42 2ebl_A COUP transcription fact 28.4 28 0.00097 30.3 2.3 32 22-56 5-36 (89)
43 3dzy_D Peroxisome proliferator 28.3 25 0.00084 37.9 2.4 31 23-56 49-79 (419)
44 1dl6_A Transcription factor II 27.3 33 0.0011 27.5 2.3 29 25-54 12-40 (58)
45 1r4i_A Androgen receptor; AR, 27.2 29 0.00098 31.1 2.2 33 21-56 4-36 (105)
46 1kb2_A Vitamin D3 receptor; VD 26.1 29 0.00098 31.3 2.0 30 24-56 6-35 (110)
47 2did_A Tripartite motif protei 25.6 59 0.002 24.6 3.5 41 22-65 6-48 (53)
48 1dsz_A RAR-alpha, retinoic aci 25.0 34 0.0012 29.5 2.2 29 25-56 5-33 (86)
49 2han_A Protein ultraspiracle; 24.3 32 0.0011 30.1 1.9 30 24-56 10-39 (93)
50 1vq8_Z 50S ribosomal protein L 24.3 25 0.00086 30.4 1.2 40 11-52 13-53 (83)
51 3cc2_Z 50S ribosomal protein L 23.2 27 0.00091 32.2 1.2 40 11-52 46-86 (116)
52 1ynw_B Retinoic acid receptor 22.7 28 0.00096 30.8 1.3 30 24-56 3-32 (99)
53 1cit_A NGFI-B, protein (orphan 22.5 40 0.0014 29.3 2.2 28 26-56 2-29 (89)
54 3dzy_A Retinoic acid receptor 21.9 24 0.0008 38.7 0.7 31 23-56 136-166 (467)
55 2a66_A Orphan nuclear receptor 21.3 27 0.00093 31.7 0.9 32 22-56 7-38 (113)
56 4hc9_A Trans-acting T-cell-spe 20.3 69 0.0024 29.0 3.3 37 22-58 57-94 (115)
57 1dsz_B RXR-alpha, retinoic aci 20.1 32 0.0011 29.6 1.1 31 23-56 4-34 (85)
No 1
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=5.2e-39 Score=302.53 Aligned_cols=124 Identities=35% Similarity=0.689 Sum_probs=116.9
Q ss_pred cchhhhhHHHHHHHHHHHcCCCCCCccCCCCCCCCeeEccceeeeehhhhhhhhcCC--cceeecccCCCCHHHHHHHHh
Q 005403 2 ANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT--HRVKSVSMAKFTSQEVKALQE 79 (698)
Q Consensus 2 ~sr~kedernekiLr~Llk~PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~LG--hrVKSLsLD~Wt~eEVe~m~~ 79 (698)
.++.+++|+++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||.|| |+||||+||+|++++|++|+.
T Consensus 3 ~~~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~s~VrSl~ld~w~~~~l~~m~~ 82 (140)
T 2olm_A 3 SAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQK 82 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSCCCEEETTTCCCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCcceeeecCCCCCCHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999998 699999999999999999999
Q ss_pred cChHHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHHhhccccccC
Q 005403 80 GGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGE 125 (698)
Q Consensus 80 gGN~~aN~iwEa~~~~~~~p~Pdssd~~~~reFIR~KYveKrF~~e 125 (698)
+||.++|++||+++++...+.|+.++.+.+++||++||++|+|+.+
T Consensus 83 ~GN~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~ 128 (140)
T 2olm_A 83 HGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVP 128 (140)
T ss_dssp CHHHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCC
T ss_pred hccHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCC
Confidence 9999999999999987667788877777889999999999999875
No 2
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=5e-37 Score=289.36 Aligned_cols=121 Identities=27% Similarity=0.580 Sum_probs=110.1
Q ss_pred hhhhhHHHHHHHHHHHcCCCCCCccCCCCCCCCeeEccceeeeehhhhhhhhcCC---cceeecccCCCCHHHHHHHHhc
Q 005403 4 RLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEG 80 (698)
Q Consensus 4 r~kedernekiLr~Llk~PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~LG---hrVKSLsLD~Wt~eEVe~m~~g 80 (698)
..+++|+++++|++|++.++|++|||||+++|+|||+|||||||++|+||||.|| +|||||+||+|++++|++|+.+
T Consensus 9 ~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~ 88 (141)
T 2crr_A 9 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM 88 (141)
T ss_dssp TTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999998 5999999999999999999999
Q ss_pred ChHHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHHhhccccccCCC
Q 005403 81 GNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERN 127 (698)
Q Consensus 81 GN~~aN~iwEa~~~~~~~p~Pdssd~~~~reFIR~KYveKrF~~e~~ 127 (698)
||.++|+|||++++.. ..+|.. .+.+++|||+||++|+|+.+..
T Consensus 89 GN~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~~~ 132 (141)
T 2crr_A 89 GNTKARLLYEANLPEN-FRRPQT--DQAVEFFIRDKYEKKKYYDKNA 132 (141)
T ss_dssp HHHHHHHHGGGSCCTT-CCCCCS--HHHHHHHHHHHHTSCTTCCCGG
T ss_pred ccHHHHHHHHhcCCcc-cCCCCc--hHHHHHHHHHHHhcCcccCCCc
Confidence 9999999999999764 445543 2467899999999999997653
No 3
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=4.4e-37 Score=287.57 Aligned_cols=120 Identities=28% Similarity=0.564 Sum_probs=105.0
Q ss_pred hhhhhHHHHHHHHHHHcCCCCCCccCCCCCCCCeeEccceeeeehhhhhhhhcCC---cceeecccCCCCHHHHHHHHhc
Q 005403 4 RLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEG 80 (698)
Q Consensus 4 r~kedernekiLr~Llk~PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~LG---hrVKSLsLD~Wt~eEVe~m~~g 80 (698)
..+++|+++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||.|| ++||||+||+|++++|++|+.+
T Consensus 7 ~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~ 86 (134)
T 2iqj_A 7 SVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM 86 (134)
T ss_dssp ------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTC
T ss_pred cHhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999998 5999999999999999999999
Q ss_pred ChHHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHHhhccccccCC
Q 005403 81 GNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGER 126 (698)
Q Consensus 81 GN~~aN~iwEa~~~~~~~p~Pdssd~~~~reFIR~KYveKrF~~e~ 126 (698)
||.++|++||++++.. ...|.. .+.+++|||+||++|+|+.+.
T Consensus 87 GN~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~~ 129 (134)
T 2iqj_A 87 GNGKANRLYEAYLPET-FRRPQI--DPAVEGFIRDKYEKKKYMDRS 129 (134)
T ss_dssp HHHHHHHHHTTTCCSS-CCCCCS--HHHHHHHHHHHHTSCTTCCTT
T ss_pred chHHHHHHHHhcCCcc-CCCCCc--hHHHHHHHHHHHhCCeeeCCc
Confidence 9999999999999754 445543 346789999999999999764
No 4
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=1.4e-33 Score=297.98 Aligned_cols=124 Identities=20% Similarity=0.424 Sum_probs=105.1
Q ss_pred cchhhhhHHHHHHHHHHHcCCCCCCccCCCCCCCCeeEccceeeeehhhhhhhhcCC---cceeecccCCCCHHHHHHHH
Q 005403 2 ANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQ 78 (698)
Q Consensus 2 ~sr~kedernekiLr~Llk~PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~LG---hrVKSLsLD~Wt~eEVe~m~ 78 (698)
++|.|++|+++++|+.|++.++|++|||||+++|+|||+|||||||++|+||||.|| +|||||+||+|+.++|++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~ 102 (368)
T 3jue_A 23 MARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMC 102 (368)
T ss_dssp ---------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999998 49999999999999999999
Q ss_pred hcChHHHHHHHhhcCCCC--CCCCCCCChHHHHHHHHHHHhhccccccCC
Q 005403 79 EGGNQRAKEVLLKEWDPQ--RQSFPDSSNVERLRNFIKHVYVDRRYTGER 126 (698)
Q Consensus 79 ~gGN~~aN~iwEa~~~~~--~~p~Pdssd~~~~reFIR~KYveKrF~~e~ 126 (698)
.+||.++|+|||++|++. +++.|++. .+.+++||++||++|+|+.+.
T Consensus 103 ~~gn~~~n~~~e~~~~~~~~~kp~~~~~-~~~re~fIr~KY~~k~f~~~l 151 (368)
T 3jue_A 103 ELGNVIINQIYEARVEAMAVKKPGPSCS-RQEKEAWIHAKYVEKKFLTKL 151 (368)
T ss_dssp HSCHHHHHHHHTTTTTTTTCCCCCTTSC-HHHHHHHHHHHHTSCTTCCSC
T ss_pred HHccHHHHHHHHhhcccccCcCCCCCCC-HHHHHHHHHHHHHhhcccccc
Confidence 999999999999999864 34444443 456788999999999998764
No 5
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.97 E-value=4.2e-32 Score=289.77 Aligned_cols=123 Identities=22% Similarity=0.414 Sum_probs=110.9
Q ss_pred hhhhhHHHHHHHHHHHcCCCCCCccCCCCCCCCeeEccceeeeehhhhhhhhcCCc--ceeecccCCCCHHHHHHHHhcC
Q 005403 4 RLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTH--RVKSVSMAKFTSQEVKALQEGG 81 (698)
Q Consensus 4 r~kedernekiLr~Llk~PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~LGh--rVKSLsLD~Wt~eEVe~m~~gG 81 (698)
..+++|+++++|++|++.|+|+.|||||+++|+|||+|||||||++|+||||.|.| +||||+||+|++++|++|+.+|
T Consensus 14 ~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l~his~v~s~~ld~w~~~~~~~~~~~g 93 (386)
T 3lju_X 14 LYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWEEAQVEFMASHG 93 (386)
T ss_dssp HHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTCTTTCCEEETTTSCCCHHHHHHHHHSS
T ss_pred hhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCCCccceeeeecccCCCHHHHHHHHHhc
Confidence 45899999999999999999999999999999999999999999999999999984 9999999999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCCh-HHHHHHHHHHHhhccccccCCC
Q 005403 82 NQRAKEVLLKEWDPQRQSFPDSSN-VERLRNFIKHVYVDRRYTGERN 127 (698)
Q Consensus 82 N~~aN~iwEa~~~~~~~p~Pdssd-~~~~reFIR~KYveKrF~~e~~ 127 (698)
|.++|++||+++++. ..+|+..| ...+++|||+||++++|+....
T Consensus 94 N~~~~~~~e~~~~~~-~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 94 NDAARARFESKVPSF-YYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp HHHHHHHHTTTCCTT-SCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred chHHHHHHhccCCcc-CCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence 999999999999764 34555433 3456789999999999997653
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=99.97 E-value=9e-31 Score=246.10 Aligned_cols=113 Identities=24% Similarity=0.422 Sum_probs=98.4
Q ss_pred hhhhHHHHHHHHHHHcCCCCCCccCCCCCCCCeeEccceeeeehhhhhhhhcCC-c--ceeecccCCCCHHHHHHHHhcC
Q 005403 5 LKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGG 81 (698)
Q Consensus 5 ~kedernekiLr~Llk~PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~LG-h--rVKSLsLD~Wt~eEVe~m~~gG 81 (698)
+..++..+++|+.|++.|+|++|+|||+++|+|||+|||||||++|+||||.|| | +||||+||+|++++|++|+.+|
T Consensus 17 ~~~~~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~G 96 (138)
T 2owa_A 17 FVSDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGG 96 (138)
T ss_dssp CBCHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhc
Confidence 345566778888899999999999999999999999999999999999999998 5 9999999999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHHhhccc
Q 005403 82 NQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRR 121 (698)
Q Consensus 82 N~~aN~iwEa~~~~~~~p~Pdssd~~~~reFIR~KYveKr 121 (698)
|.++|++||+++.. .|+....++.+.||..||.++.
T Consensus 97 N~~an~~~e~~~~~----~~~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 97 NGRARNYFKQVLGV----NFSPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp HHHHHHHHHHHTCT----TCCGGGCHHHHSHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCC----CCCCCHHHHHhhHHHHHHHHHH
Confidence 99999999986432 1333334566779999999874
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=2.8e-30 Score=245.40 Aligned_cols=93 Identities=23% Similarity=0.502 Sum_probs=85.8
Q ss_pred CcchhhhhHHHHHHHHHHHcCCCCCCccCCCCCCCCeeEccceeeeehhhhhhhhcCC-c--ceeecccCC-CCHHHHHH
Q 005403 1 MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAK-FTSQEVKA 76 (698)
Q Consensus 1 m~sr~kedernekiLr~Llk~PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~LG-h--rVKSLsLD~-Wt~eEVe~ 76 (698)
|++..+ ++++++|+.|++.|+|++|+|||+++|+|||+|||||||++|+||||.|| | +||||+||+ |++++|++
T Consensus 8 m~~~~k--~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~ 85 (149)
T 2crw_A 8 MGDPSK--QDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRC 85 (149)
T ss_dssp SCCCCH--HHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHH
T ss_pred cccCCH--HHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHH
Confidence 566433 56789999999999999999999999999999999999999999999998 4 999999995 99999999
Q ss_pred HHhcChHHHHHHHhhcCCC
Q 005403 77 LQEGGNQRAKEVLLKEWDP 95 (698)
Q Consensus 77 m~~gGN~~aN~iwEa~~~~ 95 (698)
|+.+||.++|+|||+++..
T Consensus 86 m~~~GN~~an~~~e~~~~~ 104 (149)
T 2crw_A 86 MQVGGNASASSFFHQHGCS 104 (149)
T ss_dssp HHTTCHHHHHHHHHHHCCC
T ss_pred HHHHhhHHHHHHHHhcCCC
Confidence 9999999999999998753
No 8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.96 E-value=6.6e-30 Score=241.93 Aligned_cols=120 Identities=23% Similarity=0.479 Sum_probs=91.7
Q ss_pred hhhHHHHHHHHHHHcCCCCCCccCCCCCCCCeeEccceeeeehhhhhhhhcCC---cceeecccCCCCHHHHHHHHhcCh
Q 005403 6 KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEGGN 82 (698)
Q Consensus 6 kedernekiLr~Llk~PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~LG---hrVKSLsLD~Wt~eEVe~m~~gGN 82 (698)
..+++++++|++|++.|+|++|+|||+++|+|||+|||||||++|+||||.|| ++||||+||+|+++||++|+.+||
T Consensus 20 m~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN 99 (147)
T 3dwd_A 20 MASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGN 99 (147)
T ss_dssp --CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCH
T ss_pred CCCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999999999998 499999999999999999999999
Q ss_pred HHHHHHHhhcCCCCC-CCCC---CCChHHHHHHHHHHHhhccccccC
Q 005403 83 QRAKEVLLKEWDPQR-QSFP---DSSNVERLRNFIKHVYVDRRYTGE 125 (698)
Q Consensus 83 ~~aN~iwEa~~~~~~-~p~P---dssd~~~~reFIR~KYveKrF~~e 125 (698)
.++|+|||++..... ...- .+.-....|+-|+++++.|.|..+
T Consensus 100 ~~an~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~~ 146 (147)
T 3dwd_A 100 AKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSLE 146 (147)
T ss_dssp HHHHHHHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCCC
Confidence 999999998642110 0000 111123456788888888887643
No 9
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.95 E-value=4.4e-28 Score=246.76 Aligned_cols=120 Identities=23% Similarity=0.467 Sum_probs=106.2
Q ss_pred hhhHHHHHHHHHHHcCCCCCCccCCCCCCCCeeEccceeeeehhhhhhhhcCC---cceeecccCCCCHHHHHHHHhcCh
Q 005403 6 KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEGGN 82 (698)
Q Consensus 6 kedernekiLr~Llk~PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~LG---hrVKSLsLD~Wt~eEVe~m~~gGN 82 (698)
..++..+++|+.|++.|+|++|+|||+++|+|+|+|||||||++|+||||.|| ++|||++||.|+.++|.+|+.+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN 103 (301)
T 2b0o_E 24 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 103 (301)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCC
Confidence 45677889999999999999999999999999999999999999999999998 499999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCC-CChHHHHHHHHHHHhhccccccC
Q 005403 83 QRAKEVLLKEWDPQRQSFPD-SSNVERLRNFIKHVYVDRRYTGE 125 (698)
Q Consensus 83 ~~aN~iwEa~~~~~~~p~Pd-ssd~~~~reFIR~KYveKrF~~e 125 (698)
.++|+|||+.++.....+|. .++...+++||+.||++++|..+
T Consensus 104 ~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 104 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 99999999999765344554 35567788999999999999765
No 10
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=4e-28 Score=261.63 Aligned_cols=121 Identities=22% Similarity=0.457 Sum_probs=107.8
Q ss_pred hhhHHHHHHHHHHHcCCCCCCccCCCCCCCCeeEccceeeeehhhhhhhhcCC---cceeecccCCCCHHHHHHHHhcCh
Q 005403 6 KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEGGN 82 (698)
Q Consensus 6 kedernekiLr~Llk~PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~LG---hrVKSLsLD~Wt~eEVe~m~~gGN 82 (698)
+.+|.++++|+.|++.|+|+.|||||+++|+|+|+|+|||||++|+||||.|| +|||||+||.|+.+++++|+.+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN 84 (497)
T 3lvq_E 5 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 84 (497)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCH
T ss_pred hhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhh
Confidence 45678999999999999999999999999999999999999999999999998 599999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCC-CChHHHHHHHHHHHhhccccccCC
Q 005403 83 QRAKEVLLKEWDPQRQSFPD-SSNVERLRNFIKHVYVDRRYTGER 126 (698)
Q Consensus 83 ~~aN~iwEa~~~~~~~p~Pd-ssd~~~~reFIR~KYveKrF~~e~ 126 (698)
..+|++||++++....++|. .++...+++||+.||++++|..+.
T Consensus 85 ~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 85 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcccccccc
Confidence 99999999999765555565 345566788999999999998754
No 11
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.94 E-value=1.5e-27 Score=239.91 Aligned_cols=119 Identities=24% Similarity=0.506 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCCCCCCeeEccceeeeehhhhhhhhcCC---cceeecccCCCCHHHHHHHHhcChHHH
Q 005403 9 EKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEGGNQRA 85 (698)
Q Consensus 9 ernekiLr~Llk~PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~LG---hrVKSLsLD~Wt~eEVe~m~~gGN~~a 85 (698)
|+++++|+.|++.|+|+.|||||+.+|+|+|+|||+|||++|+||||.|| ++|||++||.|+.+++.+|+.+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 56899999999999999999999999999999999999999999999998 499999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCC-ChHHHHHHHHHHHhhccccccCCC
Q 005403 86 KEVLLKEWDPQRQSFPDS-SNVERLRNFIKHVYVDRRYTGERN 127 (698)
Q Consensus 86 N~iwEa~~~~~~~p~Pds-sd~~~~reFIR~KYveKrF~~e~~ 127 (698)
|+|||+.++.....+|.. ++...+++||+.||+.++|..+..
T Consensus 82 n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~ 124 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKH 124 (278)
T ss_dssp HHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCS
T ss_pred HHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccc
Confidence 999999987654334542 456677889999999999987643
No 12
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.94 E-value=2e-27 Score=224.69 Aligned_cols=87 Identities=20% Similarity=0.528 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHHcCCCCCCccCCCCCCCCeeEccceeeeehhhhhhhhcCC---cceeecccCC-CCHHHHHHHHhcCh
Q 005403 7 EDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAK-FTSQEVKALQEGGN 82 (698)
Q Consensus 7 edernekiLr~Llk~PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~LG---hrVKSLsLD~-Wt~eEVe~m~~gGN 82 (698)
.+++.+++|+.|++.|+|++|+|||+++|+|+|+|||||||++|+||||.|| ++||||+||+ |++++|++|+.+||
T Consensus 20 ~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN 99 (144)
T 2p57_A 20 NKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGN 99 (144)
T ss_dssp CHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCH
Confidence 4456788999999999999999999999999999999999999999999998 4999999996 99999999999999
Q ss_pred HHHHHHHhhcC
Q 005403 83 QRAKEVLLKEW 93 (698)
Q Consensus 83 ~~aN~iwEa~~ 93 (698)
.++|+|||++.
T Consensus 100 ~~an~~~e~~g 110 (144)
T 2p57_A 100 ANATAFFRQHG 110 (144)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 99999999874
No 13
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=4.3e-27 Score=225.77 Aligned_cols=88 Identities=31% Similarity=0.587 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHHcC-CCCCCccCCCCCCCCeeEccceeeeehhhhhhhhcCC-c--ceeecccCCCCHHHHHHHHhcCh
Q 005403 7 EDEKNERIIRGLLKL-QDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGGN 82 (698)
Q Consensus 7 edernekiLr~Llk~-PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~LG-h--rVKSLsLD~Wt~eEVe~m~~gGN 82 (698)
++...+++|++|++. |+|++|+|||+++|+|||++||||||++|+||||.|| | +||||+||+|++++|++|+.+||
T Consensus 4 m~a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN 83 (163)
T 3sub_A 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83 (163)
T ss_dssp HHHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCH
T ss_pred ccHHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCH
Confidence 567789999999995 8999999999999999999999999999999999998 3 99999999999999999999999
Q ss_pred HHHHHHHhhcCC
Q 005403 83 QRAKEVLLKEWD 94 (698)
Q Consensus 83 ~~aN~iwEa~~~ 94 (698)
.++|++||++..
T Consensus 84 ~~an~~~e~~g~ 95 (163)
T 3sub_A 84 KKCQTYLENYGI 95 (163)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 999999998643
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.4e-25 Score=232.56 Aligned_cols=91 Identities=25% Similarity=0.569 Sum_probs=82.4
Q ss_pred hhhhhHHHHHHHHHHHcCCCCCCccCCCCCCCCeeEccceeeeehhhhhhhhcCC---cceeecccCCCCHHHHHHHHhc
Q 005403 4 RLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEG 80 (698)
Q Consensus 4 r~kedernekiLr~Llk~PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~LG---hrVKSLsLD~Wt~eEVe~m~~g 80 (698)
+...+++++++|+.|++.++|++|||||+++|+|||+|||||||++|+||||.|| ++||||+||+|++++|++|+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~ 96 (329)
T 3o47_A 17 QGMASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAG 96 (329)
T ss_dssp ------CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHh
Confidence 3456788999999999999999999999999999999999999999999999998 4899999999999999999999
Q ss_pred ChHHHHHHHhhcCC
Q 005403 81 GNQRAKEVLLKEWD 94 (698)
Q Consensus 81 GN~~aN~iwEa~~~ 94 (698)
||.++|++||+...
T Consensus 97 gN~~~n~~~e~~~~ 110 (329)
T 3o47_A 97 GNAKFREFLESQED 110 (329)
T ss_dssp CHHHHHHHHHTCSS
T ss_pred CcHHHHHHHHhcCC
Confidence 99999999998764
No 15
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=84.21 E-value=0.041 Score=44.48 Aligned_cols=29 Identities=7% Similarity=-0.052 Sum_probs=27.1
Q ss_pred CccccccCCCCCCCCCchhhhcccCCCcc
Q 005403 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (698)
Q Consensus 177 k~dkl~~mgy~d~~~~~d~l~~~~Gd~~r 205 (698)
++.+|.+|||.|++.|..+|++.+||+++
T Consensus 12 ~L~~L~eMGF~D~~~N~~aL~~~~gnv~~ 40 (54)
T 2cp8_A 12 LMAHLFEMGFCDRQLNLRLLKKHNYNILQ 40 (54)
T ss_dssp HHHHHHHHTCCCHHHHHHHHTTTTTCHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCCCHHH
Confidence 46789999999999999999999999998
No 16
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=82.48 E-value=1.6 Score=43.29 Aligned_cols=56 Identities=16% Similarity=0.335 Sum_probs=41.3
Q ss_pred HHHHHcC----CCCCCccCCCCCCCCeeEccceeeeehhhhhhhhcCCcceeecccCCCCHHHHHHHHhcChH
Q 005403 15 IRGLLKL----QDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQ 83 (698)
Q Consensus 15 Lr~Llk~----PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~LGhrVKSLsLD~Wt~eEVe~m~~gGN~ 83 (698)
...|++. |.=..|+.||.....|.+...|.++|..|...+ .++.+++..|+..-..
T Consensus 137 el~lL~~~G~~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~-------------~l~~~~l~~l~~l~~~ 196 (244)
T 1u5k_A 137 SYKLLGLAGVIPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP-------------PYPPAVLDFLRHAVRR 196 (244)
T ss_dssp HHHHHTTSSSCCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC-------------CCCHHHHHHHHHTTTS
T ss_pred HHHHHHHCCCCCCcCccccCCCCCCCcEecccCEEECcccCCCC-------------CCCHHHHHHHHHHHhC
Confidence 3456664 344699999998777889999999999995321 5788888888765433
No 17
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=78.04 E-value=0.11 Score=40.25 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=26.4
Q ss_pred CccccccCCCCCCCCCchhhhcccCCCcc
Q 005403 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (698)
Q Consensus 177 k~dkl~~mgy~d~~~~~d~l~~~~Gd~~r 205 (698)
+..+|.+|||.|+..+..+|...+||+++
T Consensus 10 ~i~~L~~MGF~d~~~~~~AL~~~~gnv~~ 38 (46)
T 2bwb_A 10 QLRQLNDMGFFDFDRNVAALRRSGGSVQG 38 (46)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHhCCCHHH
Confidence 46789999999998999999999999987
No 18
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=74.33 E-value=0.13 Score=41.16 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=26.9
Q ss_pred CccccccCCCCCCCCCchhhhcccCCCcc
Q 005403 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (698)
Q Consensus 177 k~dkl~~mgy~d~~~~~d~l~~~~Gd~~r 205 (698)
+..+|++|||.|+..+..+|...+||+++
T Consensus 12 ~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~ 40 (54)
T 2dah_A 12 QLEQLRSMGFLNREANLQALIATGGDVDA 40 (54)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCCCHHH
Confidence 56889999999998899999999999998
No 19
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=72.66 E-value=0.17 Score=42.51 Aligned_cols=29 Identities=10% Similarity=0.001 Sum_probs=27.5
Q ss_pred CccccccCCCCCCCCCchhhhcccCCCcc
Q 005403 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (698)
Q Consensus 177 k~dkl~~mgy~d~~~~~d~l~~~~Gd~~r 205 (698)
+..+|++|||.|++.|..+|+..+||+++
T Consensus 22 ql~qL~~MGF~d~~an~~AL~at~Gnve~ 50 (67)
T 2dna_A 22 EMECLQAMGFVNYNANLQALIATDGDTNA 50 (67)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCCCHHH
Confidence 67899999999999999999999999999
No 20
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=71.84 E-value=0.16 Score=41.23 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=26.9
Q ss_pred CccccccCCCCCCCCCchhhhcccCCCcc
Q 005403 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (698)
Q Consensus 177 k~dkl~~mgy~d~~~~~d~l~~~~Gd~~r 205 (698)
+.++|++|||.|++.+..+|+..+||+++
T Consensus 20 qi~~L~~MGF~d~~~~~~AL~~~~gnve~ 48 (58)
T 1wr1_B 20 QLRQLNDMGFFDFDRNVAALRRSGGSVQG 48 (58)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHhCCCHHH
Confidence 56899999999999999999999999988
No 21
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=70.19 E-value=0.21 Score=42.55 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=27.2
Q ss_pred CccccccCCCCCCCCCchhhhcccCCCcc
Q 005403 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (698)
Q Consensus 177 k~dkl~~mgy~d~~~~~d~l~~~~Gd~~r 205 (698)
+.++|++|||.|++.+..+|+..+||+++
T Consensus 32 qi~qL~eMGF~dr~~~~~AL~~t~Gnve~ 60 (74)
T 1vej_A 32 ELEELKALGFANRDANLQALVATDGDIHA 60 (74)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHhCCCHHH
Confidence 57899999999999999999999999998
No 22
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=68.53 E-value=0.34 Score=44.01 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=27.3
Q ss_pred CccccccCCCCCCCCCchhhhcccCCCcc
Q 005403 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (698)
Q Consensus 177 k~dkl~~mgy~d~~~~~d~l~~~~Gd~~r 205 (698)
+.++|++|||.|++.+..+|...+||+++
T Consensus 69 qL~qL~eMGF~d~~~ni~AL~~t~Gdve~ 97 (108)
T 2cwb_A 69 QLQQLRDMGIQDDELSLRALQATGGDIQA 97 (108)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCCCHHH
Confidence 67899999999999999999999999988
No 23
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=68.01 E-value=0.31 Score=38.57 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=26.2
Q ss_pred CccccccCCCCCCCCCchhhhcccCCCcc
Q 005403 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (698)
Q Consensus 177 k~dkl~~mgy~d~~~~~d~l~~~~Gd~~r 205 (698)
+.++|.+|||.|++.+..+|+..+||+.+
T Consensus 14 ~l~~L~~MGF~~~~~~~~AL~~t~gnve~ 42 (53)
T 2knz_A 14 QLEQLNSMGFINREANLQALIATGGDINA 42 (53)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCCCHHH
Confidence 46889999998888999999999999987
No 24
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=64.08 E-value=0.37 Score=38.08 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=26.1
Q ss_pred CccccccCCCCCCCCCchhhhcccCCCcc
Q 005403 177 SDDKNSRYGYDERSPGNEQENRQFGDYRR 205 (698)
Q Consensus 177 k~dkl~~mgy~d~~~~~d~l~~~~Gd~~r 205 (698)
+.++|.+|||.|+..+..+|+..+||+.+
T Consensus 15 ~l~~L~~MGF~~~~~~~~AL~~t~gn~e~ 43 (52)
T 2jy5_A 15 QLEQLSAMGFLNREANLQALIATGGDINA 43 (52)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCCCHHH
Confidence 46889999998888999999999999877
No 25
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=58.52 E-value=5.6 Score=31.00 Aligned_cols=36 Identities=19% Similarity=0.525 Sum_probs=29.8
Q ss_pred CCCCccCCCCC-CCCeeEccceeeeehhhhhhhhcCC
Q 005403 23 DNRRCINCNSL-GTQYVCTNFWTFVCTNCSGIHREFT 58 (698)
Q Consensus 23 gNk~CADCGs~-~PqWaSvNfGVFVC~~CSGIHR~LG 58 (698)
+.+.|.+|+.. -|.|=.-.-|..||-.|.-.++..+
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~ 39 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNG 39 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcC
Confidence 56799999996 5899988889999999987666544
No 26
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=54.94 E-value=7.4 Score=29.89 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=26.8
Q ss_pred CCccCCCCC-CCCeeEccceeeeehhhhhhhhc
Q 005403 25 RRCINCNSL-GTQYVCTNFWTFVCTNCSGIHRE 56 (698)
Q Consensus 25 k~CADCGs~-~PqWaSvNfGVFVC~~CSGIHR~ 56 (698)
+.|.+|+.. -|.|=.-..|..||-.|.-..|.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~ 34 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKL 34 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHH
Confidence 579999986 58999988999999999765554
No 27
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=53.60 E-value=9.7 Score=31.74 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=30.2
Q ss_pred CCCCCccCCCCC-CCCeeEccceeeeehhhhhhhhcCC
Q 005403 22 QDNRRCINCNSL-GTQYVCTNFWTFVCTNCSGIHREFT 58 (698)
Q Consensus 22 PgNk~CADCGs~-~PqWaSvNfGVFVC~~CSGIHR~LG 58 (698)
.+...|++|+.. -|.|-.-.-|..||-.|.-..+..+
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~ 44 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG 44 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcC
Confidence 345799999985 5899998899999999977666544
No 28
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=46.50 E-value=11 Score=34.30 Aligned_cols=33 Identities=21% Similarity=0.595 Sum_probs=27.3
Q ss_pred CCCccCCCCC-CCCeeEccceeeeehhhhhhhhc
Q 005403 24 NRRCINCNSL-GTQYVCTNFWTFVCTNCSGIHRE 56 (698)
Q Consensus 24 Nk~CADCGs~-~PqWaSvNfGVFVC~~CSGIHR~ 56 (698)
-+.|++|++. -|.|=.-.-|-+||-.|.-.++.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl 38 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKM 38 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHH
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhh
Confidence 3689999985 59999888899999999766643
No 29
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=43.76 E-value=9.2 Score=31.65 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=30.2
Q ss_pred CCCCCccCCCCC-CCCeeEccceeeeehhhhhhhhcCC
Q 005403 22 QDNRRCINCNSL-GTQYVCTNFWTFVCTNCSGIHREFT 58 (698)
Q Consensus 22 PgNk~CADCGs~-~PqWaSvNfGVFVC~~CSGIHR~LG 58 (698)
.....|.+|+.. -|.|=.-..|-.||-.|.-.++..+
T Consensus 5 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~ 42 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHN 42 (63)
T ss_dssp CTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHS
T ss_pred CCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcC
Confidence 456799999996 5899988899999999977666544
No 30
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=43.49 E-value=18 Score=30.85 Aligned_cols=40 Identities=18% Similarity=0.352 Sum_probs=31.1
Q ss_pred HHHHHHHH-HcCCCCCCccCCCCCCCCeeEccceeeeehhhhh
Q 005403 11 NERIIRGL-LKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSG 52 (698)
Q Consensus 11 nekiLr~L-lk~PgNk~CADCGs~~PqWaSvNfGVFVC~~CSG 52 (698)
.++.++++ +.....-.|.-||.....+.. .||+.|..|--
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 46667777 567777899999987777665 59999999943
No 31
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=42.00 E-value=7.3 Score=35.39 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=21.7
Q ss_pred CCCccCCCCCCC-CeeEccceeeeehhhhhhhh
Q 005403 24 NRRCINCNSLGT-QYVCTNFWTFVCTNCSGIHR 55 (698)
Q Consensus 24 Nk~CADCGs~~P-qWaSvNfGVFVC~~CSGIHR 55 (698)
-..|.+||.+=| .-.-..-++..|+.|...+-
T Consensus 56 yG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 56 LDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred CceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 469999998632 22223446779999988653
No 32
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=41.09 E-value=13 Score=35.41 Aligned_cols=34 Identities=29% Similarity=0.684 Sum_probs=27.7
Q ss_pred CCCCccCCCCC-----CCCeeEccceeeeehhhhhhhhc
Q 005403 23 DNRRCINCNSL-----GTQYVCTNFWTFVCTNCSGIHRE 56 (698)
Q Consensus 23 gNk~CADCGs~-----~PqWaSvNfGVFVC~~CSGIHR~ 56 (698)
+...|+-|+.+ +..-.|.+-...||..|...+|.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~ 105 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPE 105 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCC
Confidence 45799999986 67777888899999999876654
No 33
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=40.00 E-value=14 Score=34.44 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHhcChHHHHHHHhhcCC
Q 005403 68 KFTSQEVKALQEGGNQRAKEVLLKEWD 94 (698)
Q Consensus 68 ~Wt~eEVe~m~~gGN~~aN~iwEa~~~ 94 (698)
.|+++||++|+.+++..+-.|-.+++-
T Consensus 132 ~w~~~ei~ll~~lA~ql~iAi~qa~l~ 158 (171)
T 4glq_A 132 QWQEIEIDQFSELASTGSLVLERLHFL 158 (171)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999888877664
No 34
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=39.26 E-value=10 Score=35.91 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=22.6
Q ss_pred CCCCCccCCCCCCCC-eeEccceeeeehhhhhhhh
Q 005403 22 QDNRRCINCNSLGTQ-YVCTNFWTFVCTNCSGIHR 55 (698)
Q Consensus 22 PgNk~CADCGs~~Pq-WaSvNfGVFVC~~CSGIHR 55 (698)
..-..|.+||.+=|. -.-.--++-.|+.|...|-
T Consensus 109 g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 109 EDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 445799999986321 2223336779999998763
No 35
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=38.09 E-value=7.4 Score=35.47 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=24.1
Q ss_pred CCCCccCCCCCCC-CeeEccceeeeehhhhhhh
Q 005403 23 DNRRCINCNSLGT-QYVCTNFWTFVCTNCSGIH 54 (698)
Q Consensus 23 gNk~CADCGs~~P-qWaSvNfGVFVC~~CSGIH 54 (698)
+..+|.+||...- .|..-+|++-||..|....
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~ 36 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhcccc
Confidence 4568999998543 3345699999999998653
No 36
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=35.64 E-value=15 Score=31.78 Aligned_cols=31 Identities=13% Similarity=0.533 Sum_probs=24.9
Q ss_pred CCCCccCCCCCCCCeeEccceeeeehhhhhhhhc
Q 005403 23 DNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (698)
Q Consensus 23 gNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~ 56 (698)
|+..|.=||.... ...||++.|..|+++.|.
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFRR 31 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFKR 31 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhhh
Confidence 5788999997653 358999999999998764
No 37
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=30.93 E-value=23 Score=30.51 Aligned_cols=32 Identities=19% Similarity=0.654 Sum_probs=26.2
Q ss_pred CCCCCccCCCCCCCCeeEccceeeeehhhhhhhhc
Q 005403 22 QDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (698)
Q Consensus 22 PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~ 56 (698)
.+...|.=||.... ...||++.|..|++..|.
T Consensus 2 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 2 KETRYCAVCNDYAS---GYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCcCcEECCCCC---CeeeCccchHHhhhhhhh
Confidence 35678999997643 469999999999999876
No 38
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=30.18 E-value=23 Score=31.53 Aligned_cols=29 Identities=24% Similarity=0.704 Sum_probs=23.8
Q ss_pred CCccCCCCCCCCeeEccceeeeehhhhhhhhc
Q 005403 25 RRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (698)
Q Consensus 25 k~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~ 56 (698)
..|.=||.... ...||++.|..|+++.|.
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhee
Confidence 57899997653 358999999999998876
No 39
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=30.01 E-value=24 Score=32.80 Aligned_cols=50 Identities=28% Similarity=0.491 Sum_probs=31.8
Q ss_pred hhhhHHHHHHHHHHHcC------CCCCCccCCCCCC-----CCeeEccceeeeehhhhhhh
Q 005403 5 LKEDEKNERIIRGLLKL------QDNRRCINCNSLG-----TQYVCTNFWTFVCTNCSGIH 54 (698)
Q Consensus 5 ~kedernekiLr~Llk~------PgNk~CADCGs~~-----PqWaSvNfGVFVC~~CSGIH 54 (698)
.+|+++..+....|.+. .+...|+-|+..- ..-.|.+-...||.+|.+.+
T Consensus 30 ~~E~~ri~kL~~~l~~~k~~~~~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 30 TMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred HhHHHHHHHHHHHHHHHHHHhccCCCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 34555544444444332 3557899999853 44457777888999998766
No 40
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=28.83 E-value=22 Score=32.44 Aligned_cols=31 Identities=19% Similarity=0.664 Sum_probs=25.7
Q ss_pred CCCCccCCCCCCCCeeEccceeeeehhhhhhhhc
Q 005403 23 DNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (698)
Q Consensus 23 gNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~ 56 (698)
.+..|.=||.... ...||++.|..|+++.|.
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhhh
Confidence 3578999997643 469999999999999876
No 41
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=28.38 E-value=23 Score=29.98 Aligned_cols=34 Identities=18% Similarity=0.439 Sum_probs=26.0
Q ss_pred CCCCccCCCCC-CCCeeE--ccceeeeehhhhhhhhcC
Q 005403 23 DNRRCINCNSL-GTQYVC--TNFWTFVCTNCSGIHREF 57 (698)
Q Consensus 23 gNk~CADCGs~-~PqWaS--vNfGVFVC~~CSGIHR~L 57 (698)
....|.+|+.. -|.|=. -.-| .||-.|.-.+|..
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~ 43 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKY 43 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHH
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHh
Confidence 34799999995 589987 5667 8999997665553
No 42
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=28.35 E-value=28 Score=30.25 Aligned_cols=32 Identities=16% Similarity=0.614 Sum_probs=26.1
Q ss_pred CCCCCccCCCCCCCCeeEccceeeeehhhhhhhhc
Q 005403 22 QDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (698)
Q Consensus 22 PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~ 56 (698)
+.+..|.=||.... ...||++.|..|+++.|.
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 44678999998654 358999999999999876
No 43
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=28.34 E-value=25 Score=37.87 Aligned_cols=31 Identities=19% Similarity=0.527 Sum_probs=25.5
Q ss_pred CCCCccCCCCCCCCeeEccceeeeehhhhhhhhc
Q 005403 23 DNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (698)
Q Consensus 23 gNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~ 56 (698)
.+..|.=||...-. ..|||+.|..|+++.|.
T Consensus 49 ~~~~C~vC~~~~~g---~hygv~~C~~C~~FFrR 79 (419)
T 3dzy_D 49 MAIECRVCGDKASG---FHYGVHACEGCKGFFRR 79 (419)
T ss_dssp -CCCCSSSCSCCCS---BCSSSBCCHHHHHHHHH
T ss_pred CCCcCeECCCcCCC---CccCcccchhhhHHHcc
Confidence 36689999987654 48999999999998876
No 44
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=27.30 E-value=33 Score=27.51 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=21.0
Q ss_pred CCccCCCCCCCCeeEccceeeeehhhhhhh
Q 005403 25 RRCINCNSLGTQYVCTNFWTFVCTNCSGIH 54 (698)
Q Consensus 25 k~CADCGs~~PqWaSvNfGVFVC~~CSGIH 54 (698)
.+|-+|+.....+ ...-|..||..|.-|-
T Consensus 12 ~~Cp~C~~~~lv~-D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 12 VTCPNHPDAILVE-DYRAGDMICPECGLVV 40 (58)
T ss_dssp CSBTTBSSSCCEE-CSSSCCEECTTTCCEE
T ss_pred ccCcCCCCCceeE-eCCCCeEEeCCCCCEE
Confidence 4799999865222 3466999999996553
No 45
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=27.25 E-value=29 Score=31.12 Aligned_cols=33 Identities=12% Similarity=0.526 Sum_probs=25.9
Q ss_pred CCCCCCccCCCCCCCCeeEccceeeeehhhhhhhhc
Q 005403 21 LQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (698)
Q Consensus 21 ~PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~ 56 (698)
.+....|.=||... ....||++.|..|+++.|.
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 35578899999753 2468999999999999876
No 46
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=26.09 E-value=29 Score=31.33 Aligned_cols=30 Identities=30% Similarity=0.656 Sum_probs=24.4
Q ss_pred CCCccCCCCCCCCeeEccceeeeehhhhhhhhc
Q 005403 24 NRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (698)
Q Consensus 24 Nk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~ 56 (698)
...|.=||..... ..||++.|..|+++.|.
T Consensus 6 ~~~C~VCg~~a~g---~hyGv~sC~aCk~FFRR 35 (110)
T 1kb2_A 6 PRICGVCGDRATG---FHFNAMTCEGCKGFFRR 35 (110)
T ss_dssp -CBCTTTCSBCCS---EETTEECCHHHHHHHHH
T ss_pred CCCCcEeCCCCCc---eEeCchhHhhhhhhhee
Confidence 4679999976543 58999999999998876
No 47
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=25.62 E-value=59 Score=24.64 Aligned_cols=41 Identities=24% Similarity=0.412 Sum_probs=31.0
Q ss_pred CCCCCccCCCCCCCCeeEccceeeeehhhh--hhhhcCCcceeecc
Q 005403 22 QDNRRCINCNSLGTQYVCTNFWTFVCTNCS--GIHREFTHRVKSVS 65 (698)
Q Consensus 22 PgNk~CADCGs~~PqWaSvNfGVFVC~~CS--GIHR~LGhrVKSLs 65 (698)
.++..|..-+ ..-.|.+..=...||..|. +-|| +|+|..|.
T Consensus 6 ~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~--~H~~~~l~ 48 (53)
T 2did_A 6 SGESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR--AHTVVPLS 48 (53)
T ss_dssp CSCCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT--TSCEEECC
T ss_pred cCCCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC--CCcEeeHH
Confidence 3456787776 5578888899999999997 4676 57777664
No 48
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=25.01 E-value=34 Score=29.49 Aligned_cols=29 Identities=21% Similarity=0.659 Sum_probs=23.6
Q ss_pred CCccCCCCCCCCeeEccceeeeehhhhhhhhc
Q 005403 25 RRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (698)
Q Consensus 25 k~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~ 56 (698)
..|.=||..... ..||++.|..|++..|.
T Consensus 5 ~~C~VCg~~a~g---~hyGv~sC~aCk~FFRR 33 (86)
T 1dsz_A 5 KPCFVCQDKSSG---YHYGVSACEGCKGFFRR 33 (86)
T ss_dssp -CCTTTCSCCCS---EETTEECCHHHHHHHHH
T ss_pred CCCcEECCCccc---eeeCchhHHHHHHHHHH
Confidence 469999976543 48999999999999876
No 49
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=24.31 E-value=32 Score=30.15 Aligned_cols=30 Identities=17% Similarity=0.631 Sum_probs=25.1
Q ss_pred CCCccCCCCCCCCeeEccceeeeehhhhhhhhc
Q 005403 24 NRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (698)
Q Consensus 24 Nk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~ 56 (698)
...|.=||.... ...||++.|..|++..|.
T Consensus 10 ~~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 10 KHLCSICGDRAS---GKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCcEeCCCCc---CeecCcchhHHHHHHHHh
Confidence 568999997653 469999999999999876
No 50
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=24.30 E-value=25 Score=30.39 Aligned_cols=40 Identities=15% Similarity=0.413 Sum_probs=28.3
Q ss_pred HHHHHHHH-HcCCCCCCccCCCCCCCCeeEccceeeeehhhhh
Q 005403 11 NERIIRGL-LKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSG 52 (698)
Q Consensus 11 nekiLr~L-lk~PgNk~CADCGs~~PqWaSvNfGVFVC~~CSG 52 (698)
.++.++++ +.....-.|..||....- ....|++.|..|-.
T Consensus 13 lRk~vk~ie~~q~~~y~Cp~CG~~~v~--r~atGiW~C~~Cg~ 53 (83)
T 1vq8_Z 13 SRRRVAEIESEMNEDHACPNCGEDRVD--RQGTGIWQCSYCDY 53 (83)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEEEE--EEETTEEEETTTCC
T ss_pred HHHHHHHHHHhccccCcCCCCCCccee--ccCCCeEECCCCCC
Confidence 45666666 556667799999984332 34578999999954
No 51
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=23.19 E-value=27 Score=32.22 Aligned_cols=40 Identities=15% Similarity=0.404 Sum_probs=28.6
Q ss_pred HHHHHHHH-HcCCCCCCccCCCCCCCCeeEccceeeeehhhhh
Q 005403 11 NERIIRGL-LKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSG 52 (698)
Q Consensus 11 nekiLr~L-lk~PgNk~CADCGs~~PqWaSvNfGVFVC~~CSG 52 (698)
.++.++++ +.....-.|..||....... ..||+.|..|--
T Consensus 46 lRK~vkkiE~~q~akytCPfCGk~~vKR~--avGIW~C~~Cgk 86 (116)
T 3cc2_Z 46 SRRRVAEIESEMNEDHACPNCGEDRVDRQ--GTGIWQCSYCDY 86 (116)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEEEEEE--ETTEEEETTTCC
T ss_pred HHHHHHHHHHHhccCCcCCCCCCceeEec--CceeEECCCCCC
Confidence 45666666 55667779999998544444 459999999943
No 52
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=22.75 E-value=28 Score=30.83 Aligned_cols=30 Identities=17% Similarity=0.639 Sum_probs=23.6
Q ss_pred CCCccCCCCCCCCeeEccceeeeehhhhhhhhc
Q 005403 24 NRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (698)
Q Consensus 24 Nk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~ 56 (698)
...|.=||.... ...||++.|..|+++.|.
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFKR 32 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHHh
Confidence 357999997653 358999999999999876
No 53
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=22.48 E-value=40 Score=29.26 Aligned_cols=28 Identities=25% Similarity=0.823 Sum_probs=23.1
Q ss_pred CccCCCCCCCCeeEccceeeeehhhhhhhhc
Q 005403 26 RCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (698)
Q Consensus 26 ~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~ 56 (698)
.|.=||.... ...||++.|..|++..|.
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFKR 29 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhcee
Confidence 5888987643 468999999999999876
No 54
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=21.94 E-value=24 Score=38.72 Aligned_cols=31 Identities=16% Similarity=0.629 Sum_probs=25.0
Q ss_pred CCCCccCCCCCCCCeeEccceeeeehhhhhhhhc
Q 005403 23 DNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (698)
Q Consensus 23 gNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~ 56 (698)
.++.|.=||..... ..||++.|..|+++.|.
T Consensus 136 ~~~~C~VCg~~a~g---~hygv~sC~~Ck~FFrR 166 (467)
T 3dzy_A 136 TKHICAICGDRSSG---KHYGVYSCEGCKGFFKR 166 (467)
T ss_dssp -CEECTTTSSEECS---EETTEECCHHHHHHHHH
T ss_pred CCCcceeCCCCCCC---CcCCCcchhhhhHhccc
Confidence 35579999987544 48999999999998875
No 55
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=21.33 E-value=27 Score=31.70 Aligned_cols=32 Identities=16% Similarity=0.468 Sum_probs=24.6
Q ss_pred CCCCCccCCCCCCCCeeEccceeeeehhhhhhhhc
Q 005403 22 QDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (698)
Q Consensus 22 PgNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~ 56 (698)
..+..|.-||.... ...||++.|..|+++.|.
T Consensus 7 ~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 7 DLEELCPVCGDKVS---GYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp ---CBCTTTCCBEE---EEETTEEEEHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceeeCcccHHHHHHHHhh
Confidence 44578999997542 569999999999999876
No 56
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=20.32 E-value=69 Score=29.04 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=30.6
Q ss_pred CCCCCccCCCCC-CCCeeEccceeeeehhhhhhhhcCC
Q 005403 22 QDNRRCINCNSL-GTQYVCTNFWTFVCTNCSGIHREFT 58 (698)
Q Consensus 22 PgNk~CADCGs~-~PqWaSvNfGVFVC~~CSGIHR~LG 58 (698)
.....|++|+.. -|.|=.-..|-.||-.|.-..+..+
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~ 94 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHN 94 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHS
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhC
Confidence 456799999985 5999999999999999987666554
No 57
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=20.10 E-value=32 Score=29.61 Aligned_cols=31 Identities=16% Similarity=0.619 Sum_probs=25.0
Q ss_pred CCCCccCCCCCCCCeeEccceeeeehhhhhhhhc
Q 005403 23 DNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (698)
Q Consensus 23 gNk~CADCGs~~PqWaSvNfGVFVC~~CSGIHR~ 56 (698)
.+..|.-||.... ...||++.|..|++..|.
T Consensus 4 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 34 (85)
T 1dsz_B 4 TKHICAICGDRSS---GKHYGVYSCEGCKGFFKR 34 (85)
T ss_dssp CCEECTTTCCEES---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCEeCCCCC---ceeeCccchHHHHHHHHH
Confidence 3567999997643 348999999999999876
Done!