BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005404
(698 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 82/186 (44%), Gaps = 23/186 (12%)
Query: 17 LFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCK-----ED 71
L S+GG II Q+ENEYG + G + TGVP C E+
Sbjct: 146 LQISKGGNIIXVQVENEYG----AFGIDKPYISEIRDXVKQAGFTGVPLFQCDWNSNFEN 201
Query: 72 DAPDPV---INSCNGFYCDA----FSPNKPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLA 124
+A D + IN G D +P P +E WSGWF +G R ++L
Sbjct: 202 NALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEFWSGWFDHWGAKHETRSAEELV 261
Query: 125 FAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPF-----ITTSYDYDAPLDEYGLMRQPKY 179
+ + S F+ Y HGGT+FG G F TSYDYDAP++E G + PKY
Sbjct: 262 KGXKEXLDRNIS-FSLYXTHGGTSFGHWGGANFPNFSPTCTSYDYDAPINESGKV-TPKY 319
Query: 180 GHLKQL 185
++ L
Sbjct: 320 LEVRNL 325
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 26/93 (27%)
Query: 488 LDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPR 547
L+ + KG VW+NG +IGRYW P Q Y VP
Sbjct: 525 LNXXNWSKGXVWVNGHAIGRYWEI-------------------------GPQQTLY-VPG 558
Query: 548 SWLKPTKNLLVVFEELGGDASRISLVKRSVARV 580
WLK +N +++ + G + +++ + V
Sbjct: 559 CWLKKGENEIIILDXAGPSKAETEGLRQPILDV 591
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 72/182 (39%), Gaps = 44/182 (24%)
Query: 22 GGPIILSQIENEYGP--ESKSLGAAGHAYVNWAAKMAVGLDTGVPW-------VMCKEDD 72
GG I++ Q+ENEYG E K+ A + + PW + +ED
Sbjct: 145 GGNILMMQVENEYGSYGEDKAYLRAIRQLMEECGVTCPLFTSDGPWRATLKAGTLIEED- 203
Query: 73 APDPVINSCNGFYCDAFSPNKPYK---------------PTLWTEAWSGWFTEFGGAVHR 117
F F PY P + E W GWF + +
Sbjct: 204 ----------LFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEFWDGWFNRWKEPIIT 253
Query: 118 RPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAG----GPFI---TTSYDYDAPLDE 170
R ++LA AV +++G N YM+HGGTNFG G G TSYDYDA LDE
Sbjct: 254 RDPKELADAVREVLEQGS--INLYMFHGGTNFGFMNGCSARGTLDLPQVTSYDYDALLDE 311
Query: 171 YG 172
G
Sbjct: 312 EG 313
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 122/299 (40%), Gaps = 69/299 (23%)
Query: 298 ESSTLTAIGLLEQINI--TRDT----SDYLWYMTSVEISSSESFLR-------GGQKPTL 344
ES L AI L+E++++ T D+ + L+ E+ S +L ++ L
Sbjct: 342 ESMELDAIPLVEKVSLFETLDSLSSPVESLYPQKMEELGQSYGYLLYRTETNWDAEEERL 401
Query: 345 TVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLH 404
+ ++++GQ++ + + T + G + G++++ +L +G N G
Sbjct: 402 RIIDGRDRAQLYVDGQWVKTQYQTEIGEDIFYQGK---KKGLSRLDILIENMGRVNYGHK 458
Query: 405 Y--ETWETGVRGAVV--LHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRG 460
+ +T G+R V LH L L W+ + + L +P + +D+++G
Sbjct: 459 FLADTQRKGIRTGVCKDLHFL------LNWKHY---------PLPLDNPEK---IDFSKG 500
Query: 461 SLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTC 520
QGQ + Y + P LDL GKG ++NGQ++GR+W
Sbjct: 501 --WTQGQPAFYAYDFTVEEPKDT---YLDLSEFGKGVAFVNGQNLGRFWNV--------- 546
Query: 521 SYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVAR 579
PT Y +P S+LK N +++FE G I L ++ +
Sbjct: 547 ----------------GPTLSLY-IPHSYLKEGANRIIIFETEGQYKEEIHLTRKPTLK 588
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 92/216 (42%), Gaps = 32/216 (14%)
Query: 9 VQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKM---AVGLDTGVPW 65
V + K + L GGP+I Q+ENEYG S A Y+ + K +G D
Sbjct: 141 VLLPKMKPLLYQNGGPVITVQVENEYG----SYFACDFDYLRFLQKRFRHHLGDDV---- 192
Query: 66 VMCKEDDAPDPVIN--SCNGFYC-----------DAFSPNK---PYKPTLWTEAWSGWFT 109
V+ D A + + G Y DAF + P P + +E ++GW
Sbjct: 193 VLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLINSEFYTGWLD 252
Query: 110 EFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFG--RTAGGPFIT--TSYDYD 165
+G + +A ++ + +G S N YM+ GGTNF A P+ TSYDYD
Sbjct: 253 HWGQPHSTIKTEAVASSLYDILARGASV-NLYMFIGGTNFAYWNGANSPYAAQPTSYDYD 311
Query: 166 APLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDP 201
APL E G + + + + + K+ E + S P
Sbjct: 312 APLSEAGDLTEKYFALRNIIQKFEKVPEGPIPPSTP 347
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 472 WYKAYFDAPTGNEPLALD----LRSMGKGQVWINGQSIGRYWMA 511
+Y F P+G L D KGQVWING ++GRYW A
Sbjct: 528 FYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPA 571
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 86/228 (37%), Gaps = 43/228 (18%)
Query: 20 SQGGPIILSQIENEY-GPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVM----CKEDDAP 74
+ GGPIIL Q ENEY G G +Y+ + A VP++ +AP
Sbjct: 147 TNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIEDHARDAGIVVPFISNDAWAAGHNAP 206
Query: 75 DPVINSCN---------GFYC-------------------DAFSPNKPYKPTLWTEAWSG 106
+ + GF C + SP+ PY E G
Sbjct: 207 GTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYFHTSHEQQSPSTPYS---LVEFQGG 263
Query: 107 WFTEFGGAVHRRPVQDLAFAVARFIQK-----GGSFFNYYMYHGGTNFGRTAGGPFITTS 161
F +GG + L R K G +F N YM GGTN+G G P TS
Sbjct: 264 AFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNLYMIFGGTNWGNL-GHPGGYTS 322
Query: 162 YDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTY 209
YDY + + E + + KY LK L K+ LV ++P S TY
Sbjct: 323 YDYGSAISESRNITREKYSELKLLGNFAKVSPGYLV-ANPGDLSTSTY 369
>pdb|2JX9|A Chain A, Solution Structure Of The Gal_lectin Domain Of Mouse
Latrophilin-1 Gpcr
pdb|2JXA|A Chain A, Mouse Latrophilin-1 Gpcr Gal_lectin Domain In Complex With
Rhamnose
Length = 106
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 612 LQCAPGQSITSIEFASFG-TPSGTCGS----FQKGTCHAPNSHAMLEKECIGQESCSIFI 666
L+C PG + +E A++G T C + + C+ P++ ++ + C + C +
Sbjct: 20 LRC-PGSDVIMVENANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVVVA 78
Query: 667 SSGVFGTDPCPNVLKRLSVQAVC 689
S F DPCP K L VQ C
Sbjct: 79 GSDAF-PDPCPGTYKYLEVQYDC 100
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 83/231 (35%), Gaps = 42/231 (18%)
Query: 20 SQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWV------------- 66
+ GGP+IL Q ENEY ++ + Y+ + A VP +
Sbjct: 167 TNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQARNAGIIVPLINNDAFPGGTGAPG 226
Query: 67 -------MCKEDDAP------DPVINSCNGFYCD------AFSPNKPYKPTLWTEAWSGW 107
+ D P P NG SP+ P+ E G
Sbjct: 227 TGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWRQDHLNISPSTPFS---LVEFQGGA 283
Query: 108 FTEFGGAVHRRPVQDLAFAVARFIQK-----GGSFFNYYMYHGGTNFGRTAGGPFITTSY 162
F FGG + + R K G + FN YM GGTN+G G P TSY
Sbjct: 284 FDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIFNIYMTFGGTNWGNL-GHPGGYTSY 342
Query: 163 DYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAH 213
DY A + E + + KY LK + +K+ +++ P + G Y +
Sbjct: 343 DYGASIREDRRIDREKYSELKLQGQFLKVSP-GYITATPENATQGVYSDSQ 392
>pdb|2ZX0|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX0|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX1|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX1|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX2|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX2|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX3|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX3|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX4|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX4|B Chain B, Rhamnose-Binding Lectin Csl3
Length = 195
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 643 CHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCPNVLKRLSVQAVC 689
C + ++ + + + C G+ C + +S+ VFG DPC K L V C
Sbjct: 149 CLSQSTTSKMAERCDGKRQCIVKVSNSVFG-DPCVGTYKYLDVAYTC 194
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 643 CHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCPNVLKRLSVQAVC 689
C + +S + + + C G+ C + S+ VFG DPC K L + C
Sbjct: 49 CLSQSSTSKMAERCGGKSECIVPASNFVFG-DPCVGTYKYLDTKYSC 94
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 556 LLVVFEELGGDASRISLVKRSVARVCADAHEHHPTTDNNDIENKGNSNSTGNAKVLLQCA 615
LL FE G S + + +SVA C+D PT N IEN N AK +
Sbjct: 258 LLYAFESSSGSISNLYNMIKSVASDCSD-----PTLLGNFIENHDNPRF---AKYTSDYS 309
Query: 616 PGQSITSIEFASFGTP 631
+++ S F S G P
Sbjct: 310 QAKNVLSYIFLSDGIP 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,008,146
Number of Sequences: 62578
Number of extensions: 1023410
Number of successful extensions: 2377
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2357
Number of HSP's gapped (non-prelim): 18
length of query: 698
length of database: 14,973,337
effective HSP length: 106
effective length of query: 592
effective length of database: 8,340,069
effective search space: 4937320848
effective search space used: 4937320848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)