Query 005406
Match_columns 698
No_of_seqs 458 out of 2890
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 00:27:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mdb_A 2,3-dihydroxybenzoate-A 100.0 9E-82 3.1E-86 705.4 43.7 503 78-684 24-539 (539)
2 3ni2_A 4-coumarate:COA ligase; 100.0 1.1E-80 3.9E-85 696.4 48.2 502 76-676 19-535 (536)
3 3g7s_A Long-chain-fatty-acid-- 100.0 3.2E-80 1.1E-84 694.8 47.8 508 77-677 17-543 (549)
4 2d1s_A Luciferase, luciferin 4 100.0 3.3E-80 1.1E-84 693.7 46.5 509 77-681 23-548 (548)
5 1v25_A Long-chain-fatty-acid-C 100.0 2.4E-80 8.3E-85 694.2 43.9 503 78-677 17-537 (541)
6 3etc_A AMP-binding protein; ad 100.0 7.8E-80 2.7E-84 694.1 47.5 508 77-676 54-579 (580)
7 3rix_A Luciferase, luciferin 4 100.0 2E-80 7E-85 696.6 41.9 513 77-680 18-545 (550)
8 4fuq_A Malonyl COA synthetase; 100.0 7.3E-80 2.5E-84 684.0 45.7 492 83-676 4-500 (503)
9 3r44_A Fatty acyl COA syntheta 100.0 8.1E-80 2.8E-84 686.0 44.2 498 75-678 12-515 (517)
10 3o83_A Peptide arylation enzym 100.0 8.4E-80 2.9E-84 690.3 40.5 500 77-676 28-540 (544)
11 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.3E-78 7.8E-83 672.9 49.4 487 78-675 1-503 (504)
12 1pg4_A Acetyl-COA synthetase; 100.0 1.5E-78 5.1E-83 693.1 46.3 523 77-681 74-626 (652)
13 3c5e_A Acyl-coenzyme A synthet 100.0 8.8E-78 3E-82 676.5 51.1 507 77-675 36-561 (570)
14 1ry2_A Acetyl-coenzyme A synth 100.0 1.4E-77 4.7E-82 685.3 47.6 532 77-681 80-642 (663)
15 3ivr_A Putative long-chain-fat 100.0 2.5E-78 8.6E-83 673.7 39.6 491 78-677 5-502 (509)
16 3e7w_A D-alanine--poly(phospho 100.0 7E-77 2.4E-81 662.1 47.5 487 79-677 1-504 (511)
17 3fce_A D-alanine--poly(phospho 100.0 2.2E-77 7.4E-82 666.6 41.6 485 79-677 1-505 (512)
18 2v7b_A Benzoate-coenzyme A lig 100.0 1.7E-76 5.7E-81 662.2 47.1 499 78-672 23-528 (529)
19 3rg2_A Enterobactin synthase c 100.0 3.2E-76 1.1E-80 670.9 50.1 501 77-680 25-538 (617)
20 4gr5_A Non-ribosomal peptide s 100.0 8.6E-78 2.9E-82 677.8 36.8 478 76-673 72-568 (570)
21 1amu_A GRSA, gramicidin synthe 100.0 4E-77 1.4E-81 670.1 41.3 476 76-674 36-527 (563)
22 3tsy_A Fusion protein 4-coumar 100.0 1.7E-77 5.7E-82 716.4 38.8 519 75-686 57-592 (979)
23 4dg8_A PA1221; ANL superfamily 100.0 9.8E-77 3.4E-81 672.5 40.5 475 77-680 25-517 (620)
24 3l8c_A D-alanine--poly(phospho 100.0 1.5E-76 5E-81 661.6 40.5 490 78-677 3-513 (521)
25 3nyq_A Malonyl-COA ligase; A/B 100.0 4.7E-76 1.6E-80 653.4 34.3 478 77-672 20-504 (505)
26 3ipl_A 2-succinylbenzoate--COA 100.0 7.5E-76 2.6E-80 652.6 35.9 490 80-677 2-498 (501)
27 2vsq_A Surfactin synthetase su 100.0 6.1E-75 2.1E-79 711.2 46.5 526 3-673 414-957 (1304)
28 3gqw_A Fatty acid AMP ligase; 100.0 4.3E-73 1.5E-77 642.3 46.5 506 75-686 17-573 (576)
29 3ite_A SIDN siderophore synthe 100.0 3.9E-74 1.3E-78 647.8 34.1 515 77-685 18-553 (562)
30 3kxw_A Saframycin MX1 syntheta 100.0 4.3E-73 1.5E-77 643.8 38.3 500 77-676 9-567 (590)
31 3t5a_A Long-chain-fatty-acid-- 100.0 2.4E-61 8.3E-66 533.6 32.2 400 77-543 22-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 5.7E-55 1.9E-59 461.3 20.8 313 255-677 36-355 (358)
33 2y4o_A Phenylacetate-coenzyme 100.0 5.7E-48 1.9E-52 421.5 24.7 349 233-672 72-440 (443)
34 3qov_A Phenylacetate-coenzyme 100.0 2.5E-47 8.7E-52 415.5 28.2 329 252-669 81-430 (436)
35 2y27_A Phenylacetate-coenzyme 100.0 3E-47 1E-51 415.1 26.5 344 234-669 71-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 2.9E-30 9.9E-35 274.4 17.9 238 253-555 88-369 (369)
37 3lax_A Phenylacetate-coenzyme 99.3 5.7E-12 1.9E-16 107.6 8.7 95 542-667 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.2 2.7E-11 9.3E-16 103.1 8.5 97 542-668 1-102 (109)
39 4eql_A 4-substituted benzoates 98.9 6.2E-09 2.1E-13 113.4 14.1 133 413-568 302-447 (581)
40 4b2g_A GH3-1 auxin conjugating 98.9 3.2E-08 1.1E-12 107.9 17.4 131 413-566 307-457 (609)
41 4epl_A Jasmonic acid-amido syn 98.7 1.3E-07 4.5E-12 102.7 16.2 147 411-580 302-474 (581)
42 2y27_A Phenylacetate-coenzyme 91.6 2.1 7.1E-05 45.1 14.1 121 93-216 89-219 (437)
43 2y4o_A Phenylacetate-coenzyme 91.0 2.5 8.7E-05 44.5 14.1 121 93-216 91-221 (443)
44 3qov_A Phenylacetate-coenzyme 90.0 2.2 7.5E-05 44.9 12.4 121 94-217 86-216 (436)
45 1mdb_A 2,3-dihydroxybenzoate-A 75.4 43 0.0015 35.9 15.2 120 92-217 180-308 (539)
46 2d1s_A Luciferase, luciferin 4 74.8 21 0.00072 38.6 12.5 118 94-215 192-317 (548)
47 3ipl_A 2-succinylbenzoate--COA 74.2 44 0.0015 35.4 14.8 118 92-215 161-282 (501)
48 3hgu_A EHPF; phenazine, antibi 71.5 19 0.00064 36.6 10.5 105 92-200 89-220 (369)
49 3o83_A Peptide arylation enzym 70.6 39 0.0013 36.3 13.4 119 93-217 190-317 (544)
50 3r44_A Fatty acyl COA syntheta 68.9 50 0.0017 35.2 13.7 117 93-216 169-293 (517)
51 3rg2_A Enterobactin synthase c 65.9 86 0.0029 34.2 15.1 119 93-217 183-312 (617)
52 3g7s_A Long-chain-fatty-acid-- 62.8 56 0.0019 35.1 12.6 104 254-359 32-140 (549)
53 3ni2_A 4-coumarate:COA ligase; 60.2 41 0.0014 36.1 10.9 98 254-359 35-137 (536)
54 3fce_A D-alanine--poly(phospho 59.0 40 0.0014 35.9 10.5 120 92-216 142-270 (512)
55 3ivr_A Putative long-chain-fat 58.6 46 0.0016 35.4 10.9 96 254-359 19-119 (509)
56 1v25_A Long-chain-fatty-acid-C 57.9 74 0.0025 34.1 12.5 98 254-357 31-133 (541)
57 3c5e_A Acyl-coenzyme A synthet 57.8 90 0.0031 33.7 13.2 120 93-217 205-332 (570)
58 3rix_A Luciferase, luciferin 4 57.5 25 0.00084 38.0 8.6 100 255-359 34-138 (550)
59 3e7w_A D-alanine--poly(phospho 56.7 79 0.0027 33.5 12.4 120 92-216 141-269 (511)
60 4gs5_A Acyl-COA synthetase (AM 56.2 43 0.0015 33.8 9.6 119 89-215 32-156 (358)
61 1pg4_A Acetyl-COA synthetase; 55.5 60 0.0021 35.8 11.5 121 93-217 255-388 (652)
62 3t5a_A Long-chain-fatty-acid-- 54.5 89 0.003 32.6 12.3 104 254-359 37-148 (480)
63 2v7b_A Benzoate-coenzyme A lig 51.6 62 0.0021 34.5 10.5 95 254-358 36-135 (529)
64 1t5h_X 4-chlorobenzoyl COA lig 51.3 91 0.0031 32.9 11.7 96 254-357 15-117 (504)
65 1ry2_A Acetyl-coenzyme A synth 50.5 72 0.0025 35.3 11.1 120 93-216 261-393 (663)
66 4dg8_A PA1221; ANL superfamily 49.2 1.1E+02 0.0036 33.6 12.1 120 92-217 162-286 (620)
67 1amu_A GRSA, gramicidin synthe 48.0 1E+02 0.0034 33.3 11.5 92 254-355 52-148 (563)
68 3etc_A AMP-binding protein; ad 47.1 90 0.0031 33.8 11.0 94 254-352 69-167 (580)
69 3kxw_A Saframycin MX1 syntheta 46.8 1.2E+02 0.0043 32.5 12.2 99 254-358 24-130 (590)
70 3ite_A SIDN siderophore synthe 44.2 83 0.0028 33.8 10.1 113 105-217 184-304 (562)
71 3na5_A Phosphoglucomutase; iso 44.1 98 0.0033 33.5 10.4 103 77-185 39-155 (570)
72 2cvi_A 75AA long hypothetical 43.3 93 0.0032 23.4 7.5 37 558-595 15-51 (83)
73 4fuq_A Malonyl COA synthetase; 42.1 96 0.0033 32.8 10.1 83 274-357 27-114 (503)
74 4gr5_A Non-ribosomal peptide s 40.5 1.2E+02 0.0043 32.5 10.8 90 254-353 88-182 (570)
75 3nyq_A Malonyl-COA ligase; A/B 39.7 2E+02 0.0068 30.3 12.1 103 92-201 153-259 (505)
76 3tsy_A Fusion protein 4-coumar 35.7 83 0.0028 36.7 8.9 96 254-357 74-174 (979)
77 3tbh_A O-acetyl serine sulfhyd 35.1 1.4E+02 0.0047 29.7 9.3 66 129-194 61-127 (334)
78 3ist_A Glutamate racemase; str 34.6 1.3E+02 0.0044 28.9 8.6 78 83-167 19-96 (269)
79 3ezx_A MMCP 1, monomethylamine 33.6 1.5E+02 0.005 27.3 8.5 43 307-349 104-149 (215)
80 3l8c_A D-alanine--poly(phospho 31.7 1.4E+02 0.0048 31.6 9.3 89 254-352 17-110 (521)
81 3gqw_A Fatty acid AMP ligase; 27.0 2.4E+02 0.0081 30.1 10.3 85 273-358 47-143 (576)
82 2zbc_A 83AA long hypothetical 26.7 1.8E+02 0.0061 21.5 6.7 36 558-594 15-50 (83)
83 2vsq_A Surfactin synthetase su 24.2 1.9E+02 0.0065 34.9 9.5 120 92-217 605-730 (1304)
84 3vc3_A Beta-cyanoalnine syntha 23.3 3E+02 0.01 27.3 9.4 71 124-194 72-142 (344)
85 4h1h_A LMO1638 protein; MCCF-l 23.1 2E+02 0.007 28.4 7.9 59 134-192 8-85 (327)
86 3ju7_A Putative PLP-dependent 22.7 1.9E+02 0.0064 29.1 7.8 61 129-192 69-136 (377)
87 2djw_A Probable transcriptiona 22.0 1.6E+02 0.0055 22.5 5.6 37 558-595 15-51 (92)
88 3euc_A Histidinol-phosphate am 21.8 5.6E+02 0.019 24.9 13.2 55 135-192 106-164 (367)
89 3sr3_A Microcin immunity prote 20.8 2.4E+02 0.0083 27.9 7.9 59 134-192 9-86 (336)
No 1
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=9e-82 Score=705.43 Aligned_cols=503 Identities=21% Similarity=0.255 Sum_probs=420.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406 78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA 157 (698)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA 157 (698)
..|+.++|+++++++||++|+.+. .+++||+||+++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999653 25699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch-----HHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCce
Q 005406 158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVK 232 (698)
Q Consensus 158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 232 (698)
|+++|+++||+++.++.+++.+++++++++++|++.... ..+......++.++.++..++..
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 999999999999999999999999999999999987532 22233333456666565544311
Q ss_pred EeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHH
Q 005406 233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER 312 (698)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 312 (698)
.+.++..... .+.+.....++++++|+|||||||.||||++||+++++.+......++++++|++++++|++|.+++
T Consensus 162 --~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (539)
T 1mdb_A 162 --EFLPLEDLHT-EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL 238 (539)
T ss_dssp --TSEEGGGCCC-CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred --chhhhhhccc-cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence 0111111111 1112234578999999999999999999999999999998887777889999999999999999998
Q ss_pred HH--HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005406 313 AN--QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS 389 (698)
Q Consensus 313 ~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~ 389 (698)
.. .+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..+.+.....
T Consensus 239 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 293 (539)
T 1mdb_A 239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR------------------------- 293 (539)
T ss_dssp HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------
T ss_pred hHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc-------------------------
Confidence 85 788999999999987 79999999999999999999999999887642210
Q ss_pred CCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC-CCCCCCccCC
Q 005406 390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSP 468 (698)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p 468 (698)
....+++|.+++||+++++++.+++.+.+|+++++.||+||++..++..... ....+++|+|
T Consensus 294 -----------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p 356 (539)
T 1mdb_A 294 -----------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKP 356 (539)
T ss_dssp -----------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEE
T ss_pred -----------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcc
Confidence 0011589999999999999999999998999999999999976443321111 1234689999
Q ss_pred CCC-cEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCe
Q 005406 469 NPA-CEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNI 547 (698)
Q Consensus 469 ~~~-~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ 547 (698)
+++ .+++|+| +++..++.++ .|||+|+||++++|||++|+.|++.|..+|||+|||+|++|+||+|+|+||+||+
T Consensus 357 ~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ 432 (539)
T 1mdb_A 357 MSPYDESRVWD-DHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ 432 (539)
T ss_dssp SSTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGC
T ss_pred cCCCceEEEEC-CCCCCCcCCC---cceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccce
Confidence 976 5899999 5566666665 8999999999999999999999999988999999999999999999999999999
Q ss_pred EecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHH
Q 005406 548 FKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVL 624 (698)
Q Consensus 548 ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 624 (698)
||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.... .+ .
T Consensus 433 ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~---------~~-----------------~ 485 (539)
T 1mdb_A 433 INR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA---------PK-----------------A 485 (539)
T ss_dssp EEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC---------CC-----------------H
T ss_pred EEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCC---------CC-----------------H
Confidence 996 899999999999999999999999998543 46889999987421 11 4
Q ss_pred HHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHHHhc
Q 005406 625 AEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAE 684 (698)
Q Consensus 625 ~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ly~~ 684 (698)
++|++++++..|+.|++|+.|++++++| +|++||++|++|++.|.++|+++|++
T Consensus 486 ~~l~~~l~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~i~~~y~~ 539 (539)
T 1mdb_A 486 AELKAFLRERGLAAYKIPDRVEFVESFP------QTGVGKVSKKALREAISEKLLAGFKK 539 (539)
T ss_dssp HHHHHHHHHTTCCGGGSCSEEEECSSCC------BCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhCCCCcccCCCEEEEeccCC------CCCCcCEeHHHHHHHHHHHHhccccC
Confidence 5666777644599999999999999999 99999999999999999999999974
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.1e-80 Score=696.38 Aligned_cols=502 Identities=25% Similarity=0.354 Sum_probs=423.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005406 76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD 155 (698)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~ 155 (698)
+...|++++|.++++++||++|+++. +. .+.+||+||+++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus 19 p~~~~l~~~l~~~a~~~p~~~a~~~~---~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 91 (536)
T 3ni2_A 19 PKNLPLHSYVLENLSNHSSKPCLING---AN----GDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAF 91 (536)
T ss_dssp CSSCCHHHHHTTTGGGSTTSEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHhhcCCCceEEEEC---CC----CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 34689999999999999999999763 21 257999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406 156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235 (698)
Q Consensus 156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (698)
|||+++|++++|+++.++.+++.+++++++++++|++......+.+..... ..+ ++.++... . ....
T Consensus 92 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~---------~--~~~~ 158 (536)
T 3ni2_A 92 LGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DVK-VMCVDSAP---------D--GCLH 158 (536)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TCE-EEESSCCC---------T--TCEE
T ss_pred HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cce-EEEecCCC---------C--CccC
Confidence 999999999999999999999999999999999999988776665544322 222 44443311 1 1255
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccc----ccccCCCcEEEEcCChhhHHH
Q 005406 236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL----MVQFYPSDIYMSYLPLAHIYE 311 (698)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~~ 311 (698)
+.++...... ..+.....++++++|+|||||||.||||++||+++++.+..... .+++.++|++++++|++|.++
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 237 (536)
T 3ni2_A 159 FSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYA 237 (536)
T ss_dssp THHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHH
T ss_pred HHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHH
Confidence 6666654322 22344567899999999999999999999999999888765433 356789999999999999999
Q ss_pred HHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005406 312 RAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS 389 (698)
Q Consensus 312 ~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~ 389 (698)
+.. .+.+++.|+++++.+ +++..+++.++++++|++.++|+++..+.+....
T Consensus 238 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------- 291 (536)
T 3ni2_A 238 LNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDL-------------------------- 291 (536)
T ss_dssp HHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCG--------------------------
T ss_pred HHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCccc--------------------------
Confidence 976 678899999999987 7999999999999999999999999888652100
Q ss_pred CCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhccc-----CCCCCCCC
Q 005406 390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAI-----DKGDNLSG 463 (698)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~-----~~~~~~~~ 463 (698)
.....+++|.+++||+++++++.+++++.+ ++++++.||+||++++++.. ...+...+
T Consensus 292 ----------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 355 (536)
T 3ni2_A 292 ----------------DKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPG 355 (536)
T ss_dssp ----------------GGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTT
T ss_pred ----------------ccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCC
Confidence 001115899999999999999999999988 89999999999998765443 22335678
Q ss_pred CccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEcc
Q 005406 464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR 543 (698)
Q Consensus 464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR 543 (698)
++|+|+++++++|+|++++..++.++ .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 356 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR 432 (536)
T 3ni2_A 356 ACGTVVRNAEMKIVDPETGASLPRNQ---PGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDR 432 (536)
T ss_dssp CCCEECSSCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CeeEeCCCcEEEEEeCCCCcCCCCCC---ccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEec
Confidence 99999999999999977777777665 899999999999999999999999999999999999999999999999999
Q ss_pred CCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcC---CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005406 544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS---FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRAR 620 (698)
Q Consensus 544 ~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (698)
+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+ .++.++|+|++.+.. ..+
T Consensus 433 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------~~~-------------- 489 (536)
T 3ni2_A 433 LKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS--------QAT-------------- 489 (536)
T ss_dssp CSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CCC--------------
T ss_pred ccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCC--------CCC--------------
Confidence 9999998 89999999999999999999999999843 346789999987632 111
Q ss_pred HHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406 621 AAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK 676 (698)
Q Consensus 621 ~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~ 676 (698)
.++|+++++ .+|+.|++|+.|++++++| +|++||++|++|+++|+.
T Consensus 490 ---~~~l~~~l~-~~l~~~~~p~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 490 ---EDEIKQYIS-KQVIFYKRIKRVFFIEAIP------KAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp ---HHHHHHHHH-TTSCGGGCCSEEEECSCCC------BCTTSCBCHHHHHTC---
T ss_pred ---HHHHHHHHH-HhccCCccccEEEEEecCC------CCCCCCeeHHHHHHHhcc
Confidence 356677775 7899999999999999999 999999999999998753
No 3
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=3.2e-80 Score=694.77 Aligned_cols=508 Identities=22% Similarity=0.308 Sum_probs=397.3
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeecCCc--cCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005406 77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGT--VGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV 154 (698)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~--~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~ 154 (698)
...|+.++|+++++++||++|+.+. ++. .+..+++||+||+++++++|++|++.|+++||+|+|+++|+++|+++
T Consensus 17 ~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 93 (549)
T 3g7s_A 17 PKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMT 93 (549)
T ss_dssp CCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence 3578999999999999999999886 321 23347899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEe
Q 005406 155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234 (698)
Q Consensus 155 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (698)
+|||+++|+++|||++.++.+++.+++++++++++|++......+.......+ +..++..+.. ..
T Consensus 94 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~ 158 (549)
T 3g7s_A 94 IYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE--------------VN 158 (549)
T ss_dssp HHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS--------------SS
T ss_pred HHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC--------------Cc
Confidence 99999999999999999999999999999999999999988777776665544 4555555431 13
Q ss_pred eHHHHHhcCCCCCCCCCCCCC-CCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHH
Q 005406 235 SYLQLQSQGCSSPQPFCPPKP-EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERA 313 (698)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~ 313 (698)
++.++...+.... +.....+ +++++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++.
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~ 237 (549)
T 3g7s_A 159 SLSEVMDSGSEDF-ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFG 237 (549)
T ss_dssp CHHHHHHHSCSCC-CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHH
T ss_pred CHHHHHhcCcccc-ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHH
Confidence 5667666543322 2223344 8999999999999999999999999999998888888999999999999999999998
Q ss_pred HHHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005406 314 NQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT 392 (698)
Q Consensus 314 ~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~ 392 (698)
..+.++..|+++++.+ +++..+++.|+++++|+++++|+++..|.+.......
T Consensus 238 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------------- 291 (549)
T 3g7s_A 238 LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK-------------------------- 291 (549)
T ss_dssp HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC--------------------------
T ss_pred HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc--------------------------
Confidence 8888999999999987 7999999999999999999999999998874321100
Q ss_pred CchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHH----hC---CceecccCcchhcchhcccCCCC-CCCCC
Q 005406 393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVC----FG---CQVMEGYGMTETSCIISAIDKGD-NLSGH 464 (698)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~----~g---~~l~~~YG~TE~~~~~~~~~~~~-~~~~~ 464 (698)
....+++|.+++||+++++++.+.+.+. ++ +++++.||+||++++++...... ...++
T Consensus 292 --------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 357 (549)
T 3g7s_A 292 --------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTT 357 (549)
T ss_dssp --------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTS
T ss_pred --------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCC
Confidence 0001589999999999999999998887 56 88999999999998776654433 45688
Q ss_pred ccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhccccc--CCC--ceecCcEEEEecCCcEEE
Q 005406 465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID--GDG--WLHTGDIGLWLPGGRLKI 540 (698)
Q Consensus 465 vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~--~~g--w~~TGDlg~~~~~G~l~i 540 (698)
+|+|+++++++|+|++++..++.++ .|||+|+||++++|||++|+.|++.|. .+| ||+|||+|++|+||.|+|
T Consensus 358 ~G~p~~~~~~~i~d~~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~ 434 (549)
T 3g7s_A 358 QGVPMSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHF 434 (549)
T ss_dssp CCEECTTCEEEEECSSSCCEECTTC---CEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEE
T ss_pred ccccCCCCEEEEEeCCCCcCCCCCC---ceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEE
Confidence 9999999999999977777777665 899999999999999999999999983 567 999999999999999999
Q ss_pred EccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCH
Q 005406 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDP 617 (698)
Q Consensus 541 ~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (698)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.++.. ...
T Consensus 435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~------~~~------------ 495 (549)
T 3g7s_A 435 QDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR------GKV------------ 495 (549)
T ss_dssp EEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTT------TSC------------
T ss_pred eccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCcc------CcC------------
Confidence 9999999997 899999999999999999999999998654 467899999876410 001
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406 618 RARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA 677 (698)
Q Consensus 618 ~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~ 677 (698)
..++|+++++ .+|+.|++|+.|++++++| +|++||++|++|++.+.+.
T Consensus 496 -----~~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 496 -----DEEDIIEWVR-ERISGYKRVREVEFVEELP------RTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp -----CHHHHHHHHH-TTCC-----CCCCEEEECC-------------------------
T ss_pred -----CHHHHHHHHH-HhccCcccceEEEEeccCC------CCCCcCEeHHHHHHHhhcc
Confidence 1456777775 7899999999999999999 9999999999999988653
No 4
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3.3e-80 Score=693.73 Aligned_cols=509 Identities=23% Similarity=0.283 Sum_probs=426.2
Q ss_pred CCCCHHH-HHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005406 77 EIGTLHD-NFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD 155 (698)
Q Consensus 77 ~~~tl~~-~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~ 155 (698)
...|+.+ +|.++++++ |++|+.+. + ..+.+||+||+++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus 23 ~~~~l~~~~l~~~~~~~-~~~A~~~~---~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 94 (548)
T 2d1s_A 23 GSAGTQLRKYMERYAKL-GAIAFTNA---V----TGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPV 94 (548)
T ss_dssp SCHHHHHHHHHHHHHHH-TCEEEEET---T----TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred CcCcHHHHHHHhhhccc-CCceEEEc---C----CCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Confidence 3458999 888899999 99999752 1 1256999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406 156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235 (698)
Q Consensus 156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (698)
|||+++|++++|+++.++.+++.+++++++++++|++......+......++....++.++.... .. .+..
T Consensus 95 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~ 165 (548)
T 2d1s_A 95 IAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD-------YR--GYQC 165 (548)
T ss_dssp HHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC-------BT--TBCB
T ss_pred HHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc-------cc--cccc
Confidence 99999999999999999999999999999999999998877766665555554555666543210 00 1235
Q ss_pred HHHHHhcCCCCCCCCCCCC-----C-CCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCCh
Q 005406 236 YLQLQSQGCSSPQPFCPPK-----P-EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPL 306 (698)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl 306 (698)
|+++...+.....+..... + +++++|+|||||||.||||++||+++.+.+...... ++++++|++++++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 245 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPF 245 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccH
Confidence 6776654322101111122 4 899999999999999999999999999888776665 678899999999999
Q ss_pred hhHHHHHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 005406 307 AHIYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKK 384 (698)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~ 384 (698)
+|.+++.. .+.++ .|+++++.+ +++..+++.|+++++|+++++|+++..|.+....
T Consensus 246 ~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------- 303 (548)
T 2d1s_A 246 HHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELL--------------------- 303 (548)
T ss_dssp TSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCG---------------------
T ss_pred HHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccc---------------------
Confidence 99999987 45566 999999887 7999999999999999999999999988752100
Q ss_pred HHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCCCCCC
Q 005406 385 QAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGDNLSG 463 (698)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~ 463 (698)
.....+++|.+++||+++++++.+++.+.+ ++.+++.||+||++++++.........+
T Consensus 304 ---------------------~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 362 (548)
T 2d1s_A 304 ---------------------NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPG 362 (548)
T ss_dssp ---------------------GGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTT
T ss_pred ---------------------ccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCC
Confidence 000115899999999999999999999988 6889999999999877766544446678
Q ss_pred CccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEcc
Q 005406 464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDR 543 (698)
Q Consensus 464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR 543 (698)
++|+|+++++++|+|++++..++.++ .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 363 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR 439 (548)
T 2d1s_A 363 ASGKVVPLFKAKVIDLDTKKSLGPNR---RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR 439 (548)
T ss_dssp CCBEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEE
T ss_pred CCCccCCCceEEEEeCCcCccCCCCC---CeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEecc
Confidence 99999999999999977777776665 899999999999999999999999998899999999999999999999999
Q ss_pred CCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005406 544 KKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRAR 620 (698)
Q Consensus 544 ~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (698)
+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|+++++. ..+
T Consensus 440 ~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~--------~~~-------------- 496 (548)
T 2d1s_A 440 LKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK--------NMT-------------- 496 (548)
T ss_dssp GGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CCC--------------
T ss_pred ccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC--------CCC--------------
Confidence 9999997 899999999999999999999999998653 46789999987632 111
Q ss_pred HHHHHHHHHHHHhCCCCCcceee-EEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHH
Q 005406 621 AAVLAEMNAVGKEGQLRGFEYAK-AVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNM 681 (698)
Q Consensus 621 ~~i~~~l~~~~~~~~L~~~~~p~-~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~l 681 (698)
.++|+++++ .+|+.|++|+ .|++++++| +|++||++|++|++.|++.|++|
T Consensus 497 ---~~~l~~~~~-~~l~~~~~p~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~i~~~ 548 (548)
T 2d1s_A 497 ---EKEVMDYVA-SQVSNAKRLRGGVRFVDEVP------KGLTGKIDGRAIREILKKPVAKM 548 (548)
T ss_dssp ---HHHHHHHHH-TTSCGGGSCTTCEEECSSCC------BCTTSCBCHHHHHHHHHSCC---
T ss_pred ---HHHHHHHHH-HhccccccccccEEEccCCC------CCCcchhHHHHHHHHHhhhhhcC
Confidence 355666775 7899999999 999999999 99999999999999999888765
No 5
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=2.4e-80 Score=694.17 Aligned_cols=503 Identities=22% Similarity=0.288 Sum_probs=390.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406 78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA 157 (698)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA 157 (698)
..|+.++|+++++++||++|+.+. +. ++.+++||+||+++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999753 21 2357899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHH
Q 005406 158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL 237 (698)
Q Consensus 158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (698)
|+++|+++||+++.++.+++.+++++++++++|++.+....+......++.++.++.++.... . ....++
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~~~ 161 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP--------E--GYLAYE 161 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC--------T--TCEEHH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC--------c--ccccHH
Confidence 999999999999999999999999999999999998887777666666677777776654221 0 124566
Q ss_pred HHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhc--ccccccCCCcEEEEcCChhhHHHHHHH
Q 005406 238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF--SLMVQFYPSDIYMSYLPLAHIYERANQ 315 (698)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (698)
++...... .....++++++|+|||||||.||||++||+++++..... ...++++++|++++++|++|.+++...
T Consensus 162 ~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~ 237 (541)
T 1v25_A 162 EALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLP 237 (541)
T ss_dssp HHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHH
T ss_pred HHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHH
Confidence 66543221 134567999999999999999999999999998776652 345678899999999999999999778
Q ss_pred HHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005406 316 IVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP 393 (698)
Q Consensus 316 ~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~ 393 (698)
+.+++.|+++++.+ .++..+++.++++++|+++++|+++..|.+.....
T Consensus 238 ~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------- 288 (541)
T 1v25_A 238 YAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST----------------------------- 288 (541)
T ss_dssp HHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhcc-----------------------------
Confidence 88999999999986 59999999999999999999999999987643211
Q ss_pred chhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC-----------CCC
Q 005406 394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-----------NLS 462 (698)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-----------~~~ 462 (698)
....+++|.+++||+++++++.++| +.+|+++++.||+||++++++...... ...
T Consensus 289 -------------~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (541)
T 1v25_A 289 -------------GHRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLK 354 (541)
T ss_dssp -------------TCCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHH
T ss_pred -------------CCcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCcccccccc
Confidence 0011589999999999999999999 568999999999999987766543321 134
Q ss_pred CCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEc
Q 005406 463 GHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIID 542 (698)
Q Consensus 463 ~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~G 542 (698)
+++|+|+++++++|+| ++++.++.+. ++.|||+|+||+++.|||++|+.|++.|..+|||+|||+|++|+||+|+|+|
T Consensus 355 ~~~G~p~~~~~~~i~d-~~g~~~~~~~-~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~G 432 (541)
T 1v25_A 355 AKTGLPIPLVRLRVAD-EEGRPVPKDG-KALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKD 432 (541)
T ss_dssp TSCBEECTTCEEEEEC-TTSCBCCSSS-CCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEE
T ss_pred CCCCCcCCCcEEEEEC-CCCCCCCCCC-CcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEee
Confidence 7899999999999999 5555554321 1379999999999999999999999999889999999999999999999999
Q ss_pred cCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHH
Q 005406 543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRA 619 (698)
Q Consensus 543 R~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (698)
|+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.... .
T Consensus 433 R~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~---------~-------------- 488 (541)
T 1v25_A 433 RLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEK---------P-------------- 488 (541)
T ss_dssp ESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC------------------------------
T ss_pred cccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCC---------C--------------
Confidence 99999996 899999999999999999999999998654 46889999876211 0
Q ss_pred HHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406 620 RAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA 677 (698)
Q Consensus 620 ~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~ 677 (698)
..+++++++++.+|+.|++|+.|++++++| +|++||++|++|++.|+++
T Consensus 489 ---~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 489 ---TPEELNEHLLKAGFAKWQLPDAYVFAEEIP------RTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp ---------------CCCTTTSCSBC--------------------CCTTHHHHSTTS
T ss_pred ---CHHHHHHHHHhccCccccCCcEEEEeCCCC------CCCccCeeHHHHHHHHHHh
Confidence 134455666533899999999999999999 9999999999999987654
No 6
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=7.8e-80 Score=694.12 Aligned_cols=508 Identities=20% Similarity=0.258 Sum_probs=410.0
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406 77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH 156 (698)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l 156 (698)
.....+++|+++++++||++|+.+. +. .++.+.+||+||.++++++|++|+++|+++||+|+|+++|+++|++++|
T Consensus 54 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~l 129 (580)
T 3etc_A 54 NFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCML 129 (580)
T ss_dssp SCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHH
T ss_pred cchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4455669999999999999999875 32 2346789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch--HHHHhhhhcCCce-eEEEEeCCCCCCCCCCCCCCCceE
Q 005406 157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL--NTLLSFISEIPSV-HLIVVVGGKDEHLPSLPSTSGVKL 233 (698)
Q Consensus 157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~--~~~~~~~~~~~~~-~~ii~~~~~~~~~~~~~~~~~~~~ 233 (698)
||+++|+++||+++.++.+++.+++++++++++|++.+.. ..+.+....++.+ ..++.++.... ..+
T Consensus 130 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 199 (580)
T 3etc_A 130 GLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL----------EGW 199 (580)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCC----------TTC
T ss_pred HHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccc----------ccc
Confidence 9999999999999999999999999999999999987654 5555555555554 44555543210 123
Q ss_pred eeHHHHHhcCCCCCCCC---CCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHH
Q 005406 234 ISYLQLQSQGCSSPQPF---CPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIY 310 (698)
Q Consensus 234 ~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 310 (698)
.++.+.+.........+ ....++|+++|+|||||||.||||+++|.++++.+.......++.+++++++.+|++|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (580)
T 3etc_A 200 IDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGK 279 (580)
T ss_dssp EEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTH
T ss_pred ccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHH
Confidence 56777665443322111 246789999999999999999999999999988877666667889999999999999999
Q ss_pred HHHH-HHHHHHhCcEEEEeC---CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005406 311 ERAN-QIVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA 386 (698)
Q Consensus 311 ~~~~-~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~ 386 (698)
+.+. .+.++..|+++++.+ +++..+++.|+++++|+++++|+++..|.+...
T Consensus 280 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~------------------------ 335 (580)
T 3etc_A 280 CVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL------------------------ 335 (580)
T ss_dssp HHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC------------------------
T ss_pred HHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc------------------------
Confidence 8876 677899999998873 799999999999999999999999988865200
Q ss_pred HHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCcc
Q 005406 387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVG 466 (698)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG 466 (698)
.....++||.+++||+++++++.++|.+.+|++++++||+||+++.++.........+++|
T Consensus 336 -------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G 396 (580)
T 3etc_A 336 -------------------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIG 396 (580)
T ss_dssp ----------------------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCCB
T ss_pred -------------------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCccc
Confidence 0011158999999999999999999999899999999999999877766655567789999
Q ss_pred CCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeC-----CCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEE
Q 005406 467 SPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG-----PIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKII 541 (698)
Q Consensus 467 ~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g-----~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~ 541 (698)
+|+|+++++|+| ++++.++.++ .|||+|+| +++++|||++|+.|++.| .+|||+|||+|++|+||+|+|+
T Consensus 397 ~p~~~~~v~ivd-~~g~~~~~g~---~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~ 471 (580)
T 3etc_A 397 KPTPGYKIELMD-RDGRLCEVGE---EGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFV 471 (580)
T ss_dssp EECTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEE
T ss_pred cCCCCCEEEEEC-CCCCCCCCCC---ceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEE
Confidence 999999999999 5567666665 89999997 789999999999999999 6999999999999999999999
Q ss_pred ccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHH
Q 005406 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPR 618 (698)
Q Consensus 542 GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (698)
||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.++ ++.++|+|++.++. . ..
T Consensus 472 GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~----------~--------~~-- 530 (580)
T 3etc_A 472 GRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDY----------T--------PS-- 530 (580)
T ss_dssp EESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC----------C--------CC--
T ss_pred ecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCC----------C--------CC--
Confidence 999999997 799999999999999999999999998543 46788999988742 0 01
Q ss_pred HHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406 619 ARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK 676 (698)
Q Consensus 619 ~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~ 676 (698)
+.+.++|+++++ ..|+.|++|+.|++++++| +|++|||+|++|++++++
T Consensus 531 --~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 531 --DSLKNELQDHVK-NVTAPYKYPRIIEFVPELP------KTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp --HHHHHHHHHHHH-HHSCGGGCCSEEEEECC--------------------------
T ss_pred --HHHHHHHHHHHH-hhCCCccCCeEEEEeCCCC------CCCCcCCcHHHHHhHhhc
Confidence 233566777775 6799999999999999999 999999999999999875
No 7
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2e-80 Score=696.55 Aligned_cols=513 Identities=23% Similarity=0.298 Sum_probs=343.3
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406 77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH 156 (698)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l 156 (698)
...|+.++|.++++++|+++|++... ++ ...+.+||+||+++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~a~~a~~--~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 93 (550)
T 3rix_A 18 EDGTAGEQLHKAMKRYALVPGTIAFT--DA--HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL 93 (550)
T ss_dssp CCSCHHHHHHHHHHHHHTSTTCEEEE--ET--TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCCceEEEee--ec--CCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHH
Confidence 35799999999999999999986321 21 123679999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406 157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY 236 (698)
Q Consensus 157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (698)
||+++|++++|+++.++.+++.+++++++++++|++.+....+......++.+..++.++..... ....++
T Consensus 94 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 164 (550)
T 3rix_A 94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY---------QGFQSM 164 (550)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB---------TTBCBH
T ss_pred HHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc---------cCcccH
Confidence 99999999999999999999999999999999999999888888777778888888877653211 123456
Q ss_pred HHHHhcCCCCC------CCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCChh
Q 005406 237 LQLQSQGCSSP------QPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLA 307 (698)
Q Consensus 237 ~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~ 307 (698)
.++........ .+.....++++++|+|||||||.||||++||+++++.+...... .++.++|++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 244 (550)
T 3rix_A 165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFH 244 (550)
T ss_dssp HHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred HHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHH
Confidence 66654332211 11122346889999999999999999999999999887766554 5678999999999999
Q ss_pred hHHHHHHHHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005406 308 HIYERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA 386 (698)
Q Consensus 308 h~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~ 386 (698)
|++++...+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..+.+....
T Consensus 245 ~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------- 301 (550)
T 3rix_A 245 HGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI----------------------- 301 (550)
T ss_dssp SHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGG-----------------------
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccc-----------------------
Confidence 9999988889999999999987 7999999999999999999999999988762100
Q ss_pred HHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCc-eecccCcchhcchhcccCCCCCCCCCc
Q 005406 387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQ-VMEGYGMTETSCIISAIDKGDNLSGHV 465 (698)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~-l~~~YG~TE~~~~~~~~~~~~~~~~~v 465 (698)
.....+++|.+++||+++++++.+++.+.+++. +++.||+||+++.++.........+++
T Consensus 302 -------------------~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~v 362 (550)
T 3rix_A 302 -------------------DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAV 362 (550)
T ss_dssp -------------------GGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEE
T ss_pred -------------------cccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCc
Confidence 001115899999999999999999999988875 999999999998887777666778999
Q ss_pred cCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCC
Q 005406 466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKK 545 (698)
Q Consensus 466 G~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~ 545 (698)
|+|+++++++|+|++++..++.++ .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+|
T Consensus 363 G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~d 439 (550)
T 3rix_A 363 GKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLK 439 (550)
T ss_dssp EEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----
T ss_pred ccccCCcEEEEEeCCCCcCCCCCC---CeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecch
Confidence 999999999999977777776665 89999999999999999999999999999999999999999999999999999
Q ss_pred CeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHH
Q 005406 546 NIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAA 622 (698)
Q Consensus 546 d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (698)
|+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.++.. .
T Consensus 440 d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~-------------------------~ 493 (550)
T 3rix_A 440 SLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT-------------------------M 493 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred heeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCC-------------------------C
Confidence 99997 899999999999999999999999998653 467889988876420 1
Q ss_pred HHHHHHHHHHhCCCCCcceee-EEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHH
Q 005406 623 VLAEMNAVGKEGQLRGFEYAK-AVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISN 680 (698)
Q Consensus 623 i~~~l~~~~~~~~L~~~~~p~-~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ 680 (698)
..++|.++++ .+|+.|+.|. .|++++++| +|++||++|++|++.+.+....
T Consensus 494 ~~~~l~~~~~-~~l~~~~~~~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~~ 545 (550)
T 3rix_A 494 TEKEIVDYVA-SQVTTAKKLRGGVVFVDEVP------KGLTGKLDARKIREILIKAKKG 545 (550)
T ss_dssp -----------------------------------------------------------
T ss_pred CHHHHHHHHH-HhcccccccCCceEEEeecC------CCCCcceeHHHHHHHHHhhccc
Confidence 1345566664 6788886655 699999999 9999999999999998765544
No 8
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=7.3e-80 Score=684.04 Aligned_cols=492 Identities=25% Similarity=0.351 Sum_probs=412.5
Q ss_pred HHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcC
Q 005406 83 DNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYS 162 (698)
Q Consensus 83 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G 162 (698)
++|++.++++|++.++... + ...+++||+||+++++++|++|+++|+++||+|+|+++|+++|++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~---~---~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIE---T---AAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEE---E---TTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEe---c---CCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 5688999999999999764 1 112569999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhc
Q 005406 163 YISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQ 242 (698)
Q Consensus 163 ~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (698)
+++||+++.++.+++.+++++++++++|++.+....+......... .++.++.... ..+.+....
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~ 142 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGR-------------GSLTDAAAG 142 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSC-------------SHHHHHHHT
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCcc-------------cccchhhhc
Confidence 9999999999999999999999999999998765544433332221 2333322110 122222222
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH-HHHHHHh
Q 005406 243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN-QIVSVYY 321 (698)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~ 321 (698)
. ..........++++++|+|||||||.||||++||+++.+.+......++++++|++++.+|++|.+++.. .+.+++.
T Consensus 143 ~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 221 (503)
T 4fuq_A 143 A-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA 221 (503)
T ss_dssp S-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHT
T ss_pred C-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHh
Confidence 1 1122334567899999999999999999999999999999988888899999999999999999999765 6778999
Q ss_pred CcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHH
Q 005406 322 GVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRL 400 (698)
Q Consensus 322 G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~ 400 (698)
|+++++.+ +++..+++.++ ++|+++++|+++..+.+....
T Consensus 222 g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~------------------------------------- 262 (503)
T 4fuq_A 222 RGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRL------------------------------------- 262 (503)
T ss_dssp TCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTC-------------------------------------
T ss_pred CCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCc-------------------------------------
Confidence 99999887 79999999998 899999999999888752100
Q ss_pred HHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecC
Q 005406 401 VFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVP 480 (698)
Q Consensus 401 ~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~ 480 (698)
.....+++|.+++||+++++++.+.|...+|+++++.||+||++..++.....+...+++|+|+++++++|+|++
T Consensus 263 -----~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 337 (503)
T 4fuq_A 263 -----TKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPE 337 (503)
T ss_dssp -----STTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTT
T ss_pred -----cccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECC
Confidence 001125899999999999999999999999999999999999988765444455667899999999999999977
Q ss_pred CCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchH
Q 005406 481 EMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEK 560 (698)
Q Consensus 481 ~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~e 560 (698)
++..++.++ .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||.|+|+||+||+||+ +|++|+|.|
T Consensus 338 ~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~e 413 (503)
T 4fuq_A 338 TGKELPRGD---IGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-GGFNVYPKE 413 (503)
T ss_dssp TCCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-TTEEECHHH
T ss_pred CCCCCcCCC---ceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-CCEEECHHH
Confidence 778777765 8999999999999999999999999988999999999999999999999999999997 899999999
Q ss_pred HHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCC
Q 005406 561 IENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLR 637 (698)
Q Consensus 561 IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~ 637 (698)
||++|.+||+|.+|+|++.++ ++.++|+|+++++. ..+ .++++++++ .+|+
T Consensus 414 IE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~--------~~~-----------------~~~l~~~l~-~~L~ 467 (503)
T 4fuq_A 414 IESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGA--------TID-----------------EAQVLHGLD-GQLA 467 (503)
T ss_dssp HHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CCC-----------------HHHHHHHHB-TTBC
T ss_pred HHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCC--------CCC-----------------HHHHHHHHH-hhcc
Confidence 999999999999999998543 46789999987642 111 345666664 7899
Q ss_pred CcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406 638 GFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK 676 (698)
Q Consensus 638 ~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~ 676 (698)
.|++|+.|++++++| +|++||++|++|++.|++
T Consensus 468 ~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 468 KFKMPKKVIFVDDLP------RNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp GGGCCSEEEEESCCC------BCTTSCBCHHHHHHHTTT
T ss_pred cCCCCCEEEEECCCC------CCcccceeHHHHHHHHHH
Confidence 999999999999999 999999999999998864
No 9
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=8.1e-80 Score=686.03 Aligned_cols=498 Identities=20% Similarity=0.250 Sum_probs=414.4
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005406 75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV 154 (698)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~ 154 (698)
.+...|+.++|+++++++||++|+++. + ..+++||+||+++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~---~----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 84 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEP---S----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL 84 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEG---G----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeC---C----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence 456789999999999999999999764 2 235799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEe
Q 005406 155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234 (698)
Q Consensus 155 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (698)
+|||+++|+++||+++.++.+++.+++++++++++|++......+.......+....++.+. ...
T Consensus 85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~ 149 (517)
T 3r44_A 85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWI---------------GAD 149 (517)
T ss_dssp HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEE---------------EHH
T ss_pred HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEcc---------------Ccc
Confidence 99999999999999999999999999999999999999887776665544333221111110 001
Q ss_pred eHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH
Q 005406 235 SYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314 (698)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~ 314 (698)
.+.+....... ..+.....++++++|+|||||||.||||++||+++.+.+......++++++|++++++|++|++++..
T Consensus 150 ~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 228 (517)
T 3r44_A 150 SLAERLRSAAA-DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTT 228 (517)
T ss_dssp HHHHHHHHCCC-CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHH
T ss_pred cHHHHhhccCc-CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHH
Confidence 23444433222 22344567899999999999999999999999999999988888889999999999999999999988
Q ss_pred HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005406 315 QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP 393 (698)
Q Consensus 315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~ 393 (698)
.+.+++.|+++++.+ +++..+++.++++++|++.++|+++..+.+....
T Consensus 229 ~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------ 278 (517)
T 3r44_A 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF------------------------------ 278 (517)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH------------------------------
T ss_pred HHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc------------------------------
Confidence 666666999999887 7999999999999999999999999988763110
Q ss_pred chhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC--CCCCCCccCCCCC
Q 005406 394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG--DNLSGHVGSPNPA 471 (698)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~ 471 (698)
.....+++|.+++||+++++++.+.+... +++++++||+||+++.++..... ....+++|+|.++
T Consensus 279 ------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~ 345 (517)
T 3r44_A 279 ------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMF 345 (517)
T ss_dssp ------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTT
T ss_pred ------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCC
Confidence 11122589999999999999999999886 99999999999998876654433 3567899999999
Q ss_pred cEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecC
Q 005406 472 CEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLA 551 (698)
Q Consensus 472 ~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls 551 (698)
++++|+| +++...+.+ .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+||+||+
T Consensus 346 ~~~~i~d-~~~~~~~~g----~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 418 (517)
T 3r44_A 346 TDVAVRG-DDGVIREHG----EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIIS- 418 (517)
T ss_dssp EEEEEEC-TTSCEESSE----EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEE-
T ss_pred eEEEEEC-CCCCCCCCC----CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEE-
Confidence 9999999 444433333 69999999999999999999999999 7899999999999999999999999999997
Q ss_pred CceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHH
Q 005406 552 QGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMN 628 (698)
Q Consensus 552 ~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 628 (698)
+|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|+..... .+ .++|+
T Consensus 419 ~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~---------~~-----------------~~~l~ 472 (517)
T 3r44_A 419 GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNE---------VS-----------------EQQIV 472 (517)
T ss_dssp TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTT---------CC-----------------HHHHH
T ss_pred CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCC---------CC-----------------HHHHH
Confidence 899999999999999999999999998543 35677777443321 11 34566
Q ss_pred HHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHH
Q 005406 629 AVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAI 678 (698)
Q Consensus 629 ~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i 678 (698)
++++ .+|+.|++|+.|++++++| +|++||++|++|++.|.+++
T Consensus 473 ~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 473 EYCG-TRLARYKLPKKVIFAEAIP------RNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp HHHH-HHSCGGGSCSEEEECSCCC------BCTTCCBCHHHHHHHHGGGC
T ss_pred HHHH-HhCCCCCCCCEEEEECCCC------CCCCcCccHHHHHHHHHhhc
Confidence 6665 6799999999999999999 99999999999999987654
No 10
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=8.4e-80 Score=690.25 Aligned_cols=500 Identities=17% Similarity=0.201 Sum_probs=338.8
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406 77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH 156 (698)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l 156 (698)
...|+.++|+++++++||++|+.+. .+.+||+||+++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 98 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIICG---------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF 98 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcC---------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
Confidence 3578999999999999999999753 2579999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch-----HHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCc
Q 005406 157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGV 231 (698)
Q Consensus 157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~ 231 (698)
||+++|++++|+++.++.+++.+++++++++++|++.... ..........+....++..+....
T Consensus 99 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 167 (544)
T 3o83_A 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT----------- 167 (544)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT-----------
T ss_pred HHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc-----------
Confidence 9999999999999999999999999999999999987653 223333344455566666544211
Q ss_pred eEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHH
Q 005406 232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYE 311 (698)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~ 311 (698)
...+.++.........+.....++++++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.++
T Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 246 (544)
T 3o83_A 168 -DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFM 246 (544)
T ss_dssp -SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred -ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEee
Confidence 1345555544333223334567899999999999999999999999999999988888889999999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005406 312 RAN--QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV 388 (698)
Q Consensus 312 ~~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~ 388 (698)
+.. .+.+++.|+++++.+ +++..+++.++++++|+++++|+++..+.+......
T Consensus 247 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------- 303 (544)
T 3o83_A 247 LSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK----------------------- 303 (544)
T ss_dssp HHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-----------------------
T ss_pred cchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-----------------------
Confidence 875 678899999999987 799999999999999999999999998876422100
Q ss_pred cCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC-CCCCCccC
Q 005406 389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-NLSGHVGS 467 (698)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (698)
. ..+++|.+++||+++++++.+++.+.+|+++++.||+||++..++...... ...+++|+
T Consensus 304 --------~-----------~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~ 364 (544)
T 3o83_A 304 --------D-----------QIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGR 364 (544)
T ss_dssp --------H-----------HHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCE
T ss_pred --------c-----------cCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCce
Confidence 0 005899999999999999999999989999999999999876544332221 23468999
Q ss_pred CC-CCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCC
Q 005406 468 PN-PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN 546 (698)
Q Consensus 468 p~-~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d 546 (698)
|+ ++++++|+| +++..++.++ .|||+|+||+++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+||
T Consensus 365 p~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd 440 (544)
T 3o83_A 365 PISSDDEIKIVD-EQYREVPEGE---IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKD 440 (544)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-
T ss_pred ecCCCcEEEEEC-CCCCCCCCCC---eeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCC
Confidence 96 899999999 6677776665 899999999999999999999999999999999999999999999999999999
Q ss_pred eEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHH
Q 005406 547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAV 623 (698)
Q Consensus 547 ~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 623 (698)
+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.+.. ..
T Consensus 441 ~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~--------------------------~~ 493 (544)
T 3o83_A 441 QINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPE--------------------------LK 493 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCC--------------------------CC
Confidence 9996 899999999999999999999999998543 46788999876532 11
Q ss_pred HHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHH
Q 005406 624 LAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAK 676 (698)
Q Consensus 624 ~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~ 676 (698)
.+++++++++.+|+.|++|+.|++++++| +|++||++|++|++.|.+
T Consensus 494 ~~~l~~~~~~~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 494 AVVLRRHLMELGIAQYKLPDQIKLIESLP------LTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHhCCCCcccCCcEEEEeccCC------CCCCCCCcHHHHHHHHhh
Confidence 34455666534799999999999999999 999999999999998864
No 11
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.3e-78 Score=672.89 Aligned_cols=487 Identities=19% Similarity=0.240 Sum_probs=401.9
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406 78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA 157 (698)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA 157 (698)
++|+.++|+++++++||++|+.+. +. .+++||+||+++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---AR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TT----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CC----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 468999999999999999999753 21 26799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEe--cccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406 158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFC--IPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235 (698)
Q Consensus 158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (698)
|+++|++++|+++.++.+++.+++++++++++|+ +......+.. ..+.++ ++ .
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~---------------------~ 128 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ---SGSGAR-II---------------------F 128 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHH---HCCCCE-EE---------------------E
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhh---ccccce-eE---------------------E
Confidence 9999999999999999999999999999999999 6654443311 112222 22 2
Q ss_pred HHHHHhcCC----CCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccccccc--CCCcEEEEcCChhhH
Q 005406 236 YLQLQSQGC----SSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQF--YPSDIYMSYLPLAHI 309 (698)
Q Consensus 236 ~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~h~ 309 (698)
++++...+. ....+.....++++++|+|||||||.||||++||+++.+.+......+++ .++|++++++|++|.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 208 (504)
T 1t5h_X 129 LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208 (504)
T ss_dssp GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSH
T ss_pred ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhc
Confidence 222222110 11111234578999999999999999999999999999988877767777 889999999999999
Q ss_pred HHHHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Q 005406 310 YERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAI 387 (698)
Q Consensus 310 ~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~ 387 (698)
+++.. .+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..|.+......
T Consensus 209 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 266 (504)
T 1t5h_X 209 VGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---------------------- 266 (504)
T ss_dssp HHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------------
T ss_pred chHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------------
Confidence 99854 788999999999987 799999999999999999999999998876321000
Q ss_pred HcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccC
Q 005406 388 VSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGS 467 (698)
Q Consensus 388 ~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~ 467 (698)
. ....+++|.+++||+++++++.+.|++.+++.+++.||+||++.. .... ....+++|.
T Consensus 267 ----~--------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~-~~~~--~~~~~~~g~ 325 (504)
T 1t5h_X 267 ----S--------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNS-LYMR--QPKTGTEMA 325 (504)
T ss_dssp ----C--------------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEEE-EEEE--SCSSSSEEB
T ss_pred ----c--------------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccccc-cccc--CCCCCcccc
Confidence 0 001158999999999999999999999999999999999999432 2221 345688999
Q ss_pred CCCCcEEEEEecCCC--CCCCCCCCCCccEEEEe-CCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccC
Q 005406 468 PNPACEIKLVDVPEM--NYTSEDQPHPRGEICVR-GPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK 544 (698)
Q Consensus 468 p~~~~~v~i~d~~~~--~~~~~~~~~~~GEl~v~-g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~ 544 (698)
|.++++++|+|.++. ..++.+ +.|||+|+ |++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+
T Consensus 326 p~~~~~~~i~~~~~~~~~~~~~g---~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~ 401 (504)
T 1t5h_X 326 PGFFSEVRIVRIGGGVDEIVANG---EEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRV 401 (504)
T ss_dssp CCTTCCEEEECTTSCTTCBCCTT---CCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEG
T ss_pred CCCCCceeEEeccCCCCCcCCCC---CcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcc
Confidence 999999999994332 444444 48999999 9999999999999999999 7899999999999999999999999
Q ss_pred CCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHH
Q 005406 545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARA 621 (698)
Q Consensus 545 ~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (698)
||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|+++++. ..+
T Consensus 402 dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------~~~--------------- 457 (504)
T 1t5h_X 402 DDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------TLS--------------- 457 (504)
T ss_dssp GGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC--------CCC---------------
T ss_pred cCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc--------CcC---------------
Confidence 999996 899999999999999999999999999654 46899999987632 111
Q ss_pred HHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHH
Q 005406 622 AVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFA 675 (698)
Q Consensus 622 ~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~ 675 (698)
.++|++++++.+|+.|++|+.|++++++| +|++|||+|++|++.|+
T Consensus 458 --~~~l~~~~~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 458 --ADALDTFCRSSELADFKRPKRYFILDQLP------KNALNKVLRRQLVQQVS 503 (504)
T ss_dssp --HHHHHHHHHTSSCCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHHC
T ss_pred --HHHHHHHHhhccCcccccceEEEEhhhCC------CCCCCCEeHHHHHHHhc
Confidence 35667777633899999999999999999 99999999999999874
No 12
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.5e-78 Score=693.08 Aligned_cols=523 Identities=17% Similarity=0.226 Sum_probs=426.4
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406 77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH 156 (698)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l 156 (698)
...+++++|+++++++||++|+++. +...++.+.+||+||+++++++|++|+++|+++||+|+|+++|++++++++|
T Consensus 74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l 150 (652)
T 1pg4_A 74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML 150 (652)
T ss_dssp EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3467889999999999999999875 3223346789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch---------HHHHhhhhcCC--ceeEEEEeCCCCCCCCCC
Q 005406 157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL---------NTLLSFISEIP--SVHLIVVVGGKDEHLPSL 225 (698)
Q Consensus 157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~---------~~~~~~~~~~~--~~~~ii~~~~~~~~~~~~ 225 (698)
||+++|++++|+++.++.+++.+++++++++++|++.... ..+.+.....+ .+..+++++....... .
T Consensus 151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-~ 229 (652)
T 1pg4_A 151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID-W 229 (652)
T ss_dssp HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC-C
T ss_pred HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc-c
Confidence 9999999999999999999999999999999999986532 23333333332 4566676654321110 0
Q ss_pred CCCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHH-hcccccccCCCcEEEEcC
Q 005406 226 PSTSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQFYPSDIYMSYL 304 (698)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~ 304 (698)
. . .....|++++..... ..+.....++++++|+|||||||.||||+++|++++..+. .....+++.++|++++++
T Consensus 230 ~--~-~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~ 305 (652)
T 1pg4_A 230 Q--E-GRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTA 305 (652)
T ss_dssp C--B-TTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECS
T ss_pred c--C-CCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEcc
Confidence 0 0 123578887764322 1233345689999999999999999999999999887653 344457889999999999
Q ss_pred ChhhHHHHHH-HHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHH
Q 005406 305 PLAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTA 378 (698)
Q Consensus 305 pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~ 378 (698)
|++|++++.. ++.+++.|+++++++ .++..+++.|+++++|+++++|+++..|.+......
T Consensus 306 ~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------- 372 (652)
T 1pg4_A 306 DVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI------------- 372 (652)
T ss_dssp CTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT-------------
T ss_pred CCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcccc-------------
Confidence 9999999954 788999999999987 378999999999999999999999998875311000
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC---CceecccCcchhcchhccc
Q 005406 379 AYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIISAI 455 (698)
Q Consensus 379 ~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g---~~l~~~YG~TE~~~~~~~~ 455 (698)
+....++||.+++||+++++++.+++.+.+| +++++.||+||+++.++..
T Consensus 373 ---------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~ 425 (652)
T 1pg4_A 373 ---------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 425 (652)
T ss_dssp ---------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCC
T ss_pred ---------------------------ccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecC
Confidence 0011268999999999999999999998888 8999999999998766655
Q ss_pred CCC--CCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeC--CCccccccCChhhhccccc--CCCceecCcE
Q 005406 456 DKG--DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRG--PIVFQGYYKNEVQTREVID--GDGWLHTGDI 529 (698)
Q Consensus 456 ~~~--~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g--~~~~~GY~~~~~~t~~~f~--~~gw~~TGDl 529 (698)
.+. ....+++|+|++|++++|+| +++..++.+. .|||+|+| |++++|||++|+.+.+.|. .+|||+|||+
T Consensus 426 ~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~---~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDl 501 (652)
T 1pg4_A 426 LPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGAT---EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDG 501 (652)
T ss_dssp CTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSE---EEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEE
T ss_pred CCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCc---eEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcE
Confidence 432 35678999999999999999 5566665554 89999999 7999999999999988763 4899999999
Q ss_pred EEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCC
Q 005406 530 GLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIK 606 (698)
Q Consensus 530 g~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~ 606 (698)
|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.++ ++.++|+|+++++. .
T Consensus 502 g~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~----------~ 570 (652)
T 1pg4_A 502 ARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGE----------E 570 (652)
T ss_dssp EEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTC----------C
T ss_pred EEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCC----------C
Confidence 999999999999999999998 899999999999999999999999998543 46899999988642 0
Q ss_pred cccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHH
Q 005406 607 FEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNM 681 (698)
Q Consensus 607 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~l 681 (698)
.++ .+.++|+++++ .+|+.|++|+.|++++++| +|++|||+|++|++.+..+++++
T Consensus 571 --------~~~----~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~~~~~~ 626 (652)
T 1pg4_A 571 --------PSP----ELYAEVRNWVR-KEIGPLATPDVLHWTDSLP------KTRSGKIMRRILRKIAAGDTSNL 626 (652)
T ss_dssp --------CCH----HHHHHHHHHHH-HHTCGGGCCSEEEECSCCC------BCTTSCBCHHHHHHHHHTC----
T ss_pred --------CCH----HHHHHHHHHHH-HhCCCCcCCeEEEEcCCCC------CCCCccchHHHHHHHHhCCCCCC
Confidence 011 23456667775 6799999999999999999 99999999999999998766443
No 13
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=8.8e-78 Score=676.47 Aligned_cols=507 Identities=19% Similarity=0.243 Sum_probs=426.9
Q ss_pred CCCCHHHHHHHHHHh-----CCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCHh
Q 005406 77 EIGTLHDNFIYAVEN-----YPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPE 150 (698)
Q Consensus 77 ~~~tl~~~l~~~a~~-----~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~e 150 (698)
...++.++|++++++ +||++|+.+. ++. +..+++||+||.++++++|++|++. |+++||+|+|+++|+++
T Consensus 36 ~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e 111 (570)
T 3c5e_A 36 KFNFASDVLDHWADMEKAGKRPPSPALWWV---NGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE 111 (570)
T ss_dssp BCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH
T ss_pred cccHHHHHHHHHHhhccccCCCCceEEEEE---cCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH
Confidence 345678999999999 9999999875 321 2347899999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCC
Q 005406 151 WLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSG 230 (698)
Q Consensus 151 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ 230 (698)
|++++|||+++|+++||+++.++.+++.+++++++++++|++.+....+......++.++.++.+++... .+
T Consensus 112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 183 (570)
T 3c5e_A 112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC--------DG 183 (570)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCC--------TT
T ss_pred HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCc--------cc
Confidence 9999999999999999999999999999999999999999998887777766666777777776654210 11
Q ss_pred ceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHH-HHHhcccccccCCCcEEEEcCChhhH
Q 005406 231 VKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLIS-NVAGFSLMVQFYPSDIYMSYLPLAHI 309 (698)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~pl~h~ 309 (698)
...+++++..... ..+.....++++++|+|||||||.||||++||+.+.. ..... ..+++.++|++++++|++|+
T Consensus 184 --~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~ 259 (570)
T 3c5e_A 184 --WLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGWI 259 (570)
T ss_dssp --SEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTSH
T ss_pred --cccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHHH
Confidence 2467777654332 1222346789999999999999999999999994432 44443 56788999999999999999
Q ss_pred HHHHH-HHHHHHhCcEEEEeC---CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 005406 310 YERAN-QIVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQ 385 (698)
Q Consensus 310 ~~~~~-~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~ 385 (698)
+++.. .+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..+.+.. .
T Consensus 260 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~-------------------- 316 (570)
T 3c5e_A 260 LNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---L-------------------- 316 (570)
T ss_dssp HHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---T--------------------
T ss_pred HHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---c--------------------
Confidence 99885 778899999999985 69999999999999999999999999886520 0
Q ss_pred HHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCc
Q 005406 386 AIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHV 465 (698)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~v 465 (698)
.....+++|.+++||+++++++.+.|.+.+|+++++.||+||++++++.........+++
T Consensus 317 --------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~v 376 (570)
T 3c5e_A 317 --------------------SSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYM 376 (570)
T ss_dssp --------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCC
T ss_pred --------------------cccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCcc
Confidence 000115899999999999999999999988999999999999987666554445667899
Q ss_pred cCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEe-----CCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEE
Q 005406 466 GSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVR-----GPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540 (698)
Q Consensus 466 G~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~-----g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i 540 (698)
|+|+++++++|+| ++++.++.++ .|||+|+ |++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|
T Consensus 377 G~p~~~~~v~i~d-~~g~~~~~G~---~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~ 451 (570)
T 3c5e_A 377 GTAASCYDVQIID-DKGNVLPPGT---EGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQF 451 (570)
T ss_dssp CEECTTCCEEEEC-TTSCBCCTTC---CEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEE
T ss_pred cccCCCceEEEEC-CCCCCCCCCC---CCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEEE
Confidence 9999999999999 5667776665 8999999 9999999999999999999 589999999999999999999
Q ss_pred EccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCH
Q 005406 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDP 617 (698)
Q Consensus 541 ~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (698)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.++... ..
T Consensus 452 ~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~-----------------~~- 512 (570)
T 3c5e_A 452 MGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLS-----------------HD- 512 (570)
T ss_dssp EEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTT-----------------SC-
T ss_pred EecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccC-----------------cc-
Confidence 9999999997 899999999999999999999999998643 4678999998764200 01
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHH
Q 005406 618 RARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFA 675 (698)
Q Consensus 618 ~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~ 675 (698)
.+.+.++|+++++ .+|+.|++|+.|++++++| +|++||++|++|++.+.
T Consensus 513 --~~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~ 561 (570)
T 3c5e_A 513 --PEQLTKELQQHVK-SVTAPYKYPRKIEFVLNLP------KTVTGKIQRAKLRDKEW 561 (570)
T ss_dssp --HHHHHHHHHHHHH-HHSCGGGSCSEEEEESCCC------BCTTCCBCHHHHHHHHT
T ss_pred --hHHHHHHHHHHHH-hhCccccCCcEEEEeccCC------CCCCcCCcHHHHHHHHH
Confidence 1234567777775 6899999999999999999 99999999999998764
No 14
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.4e-77 Score=685.31 Aligned_cols=532 Identities=16% Similarity=0.207 Sum_probs=425.9
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCCHhHHHHH
Q 005406 77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLL-FHGLQKGVRIGLYLINRPEWLIVD 155 (698)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~n~~e~~~~~ 155 (698)
...+++++|+++++++||++|+++. +...+..+.+||+||+++++++|++|+ ++|+++||+|+|+++|++|+++++
T Consensus 80 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~ 156 (663)
T 1ry2_A 80 QLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITL 156 (663)
T ss_dssp EECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHH
T ss_pred CccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Confidence 4568899999999999999999875 322334678999999999999999999 999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch---------HHHHhhhhcCCceeEEEEeCCCCCCCCCCC
Q 005406 156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL---------NTLLSFISEIPSVHLIVVVGGKDEHLPSLP 226 (698)
Q Consensus 156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~---------~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 226 (698)
|||+++|++++|+++.++.+++.+++++++++++|+++... ..+.+....++.++.+++++.........
T Consensus 157 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~- 235 (663)
T 1ry2_A 157 LAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF- 235 (663)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC-
T ss_pred HHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCcccc-
Confidence 99999999999999999999999999999999999987542 23444555566777777776432100000
Q ss_pred CCCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHH-hcccccccCCCcEEEEcCC
Q 005406 227 STSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVA-GFSLMVQFYPSDIYMSYLP 305 (698)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~p 305 (698)
.......|.++...... ..+..+..++++++|+|||||||.||||+++|++++..+. .....+++.++|++++++|
T Consensus 236 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 312 (663)
T 1ry2_A 236 --HAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGD 312 (663)
T ss_dssp --CSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSC
T ss_pred --CCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCC
Confidence 01123568887754322 2233456789999999999999999999999999876654 3344578899999999999
Q ss_pred hhhHHHHHH-HHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 005406 306 LAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAA 379 (698)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 379 (698)
++|+++... ++.+++.|+++++++ .++..+++.|+++++|+++++|+++..|.+....
T Consensus 313 ~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~---------------- 376 (663)
T 1ry2_A 313 IGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS---------------- 376 (663)
T ss_dssp TTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT----------------
T ss_pred cHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc----------------
Confidence 999999854 788999999999987 3788999999999999999999999887642100
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC---CceecccCcchhcchhcccC
Q 005406 380 YNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG---CQVMEGYGMTETSCIISAID 456 (698)
Q Consensus 380 ~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g---~~l~~~YG~TE~~~~~~~~~ 456 (698)
.. +....++||.+++||+++++++.+++.+.+| +++++.||+||+++.++...
T Consensus 377 -------------~~-----------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~ 432 (663)
T 1ry2_A 377 -------------YI-----------ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPL 432 (663)
T ss_dssp -------------SS-----------SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECC
T ss_pred -------------cc-----------ccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccC
Confidence 00 0001158999999999999999999999888 89999999999987666544
Q ss_pred C---CCCCCCCccCCCCCcEEEEEecCCCCCCCC-CCCCCccEEEEeC--CCccccccCChhhhccccc--CCCceecCc
Q 005406 457 K---GDNLSGHVGSPNPACEIKLVDVPEMNYTSE-DQPHPRGEICVRG--PIVFQGYYKNEVQTREVID--GDGWLHTGD 528 (698)
Q Consensus 457 ~---~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~-~~~~~~GEl~v~g--~~~~~GY~~~~~~t~~~f~--~~gw~~TGD 528 (698)
+ .....+++|+|++|++++|+|.+++..++. + +.|||+|+| |++++|||++|+.|.+.|. .+|||+|||
T Consensus 433 ~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g---~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGD 509 (663)
T 1ry2_A 433 AGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSH---AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGD 509 (663)
T ss_dssp TTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSS---CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEE
T ss_pred CCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCC---cceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCC
Confidence 3 235678999999999999999546665554 4 389999999 5899999999999988873 389999999
Q ss_pred EEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCC
Q 005406 529 IGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGI 605 (698)
Q Consensus 529 lg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~ 605 (698)
+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.++ ++.++|+|+++++.. +.. .
T Consensus 510 lg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~--~~~---~ 583 (663)
T 1ry2_A 510 GAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSS--WST---A 583 (663)
T ss_dssp EEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC-------------
T ss_pred EEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCc--ccc---c
Confidence 9999999999999999999997 799999999999999999999999999654 468999999887431 000 0
Q ss_pred CcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHH
Q 005406 606 KFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNM 681 (698)
Q Consensus 606 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~l 681 (698)
.++ ..+.+.++|+++++ .+|+.|++|+.|++++++| +|++||++|++|++.|..+++++
T Consensus 584 ---------~~~-~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~~~~~~ 642 (663)
T 1ry2_A 584 ---------TDD-ELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDLP------KTRSGKIMRRILRKILAGESDQL 642 (663)
T ss_dssp --------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCCC------BCTTSCBCHHHHHHSCC------
T ss_pred ---------cch-hHHHHHHHHHHHHH-HhCCCCcCCeEEEEcCCCC------CCCccCchHHHHHHHHcCCCCCC
Confidence 000 00023566677775 6799999999999999999 99999999999999998765444
No 15
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=2.5e-78 Score=673.67 Aligned_cols=491 Identities=20% Similarity=0.273 Sum_probs=330.0
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406 78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA 157 (698)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA 157 (698)
..|+.++|+++++++||++|+.+. .+++||+||.++++++|++|++.|+++||+|+|+++|+++|++++||
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 75 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMVD---------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGA 75 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHCCCceEEEEC---------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 578999999999999999999763 25699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHH
Q 005406 158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL 237 (698)
Q Consensus 158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (698)
|+++|++++|+++.++.+++.+++++++++++|++.+....+......++.+..++.+++... .+.
T Consensus 76 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~ 141 (509)
T 3ivr_A 76 VALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG--------------PFA 141 (509)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS--------------SCE
T ss_pred HHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc--------------Chh
Confidence 999999999999999999999999999999999999887776666667777777777654221 111
Q ss_pred HHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHH
Q 005406 238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIV 317 (698)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~ 317 (698)
++.........+.....++++++|+|||||||.||||++||+++.+.+.+....++++++|++++++|++|++++...+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 221 (509)
T 3ivr_A 142 PFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLT 221 (509)
T ss_dssp EGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHH
T ss_pred hHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHH
Confidence 22221112223344567899999999999999999999999999999988888899999999999999999999988776
Q ss_pred HHHhCcE-EEEeCCChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchh
Q 005406 318 SVYYGVA-VGFYQGDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKM 396 (698)
Q Consensus 318 ~l~~G~~-~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~ 396 (698)
+++.|++ +++..+++..+++.++++++|+++++|+++..+++... .
T Consensus 222 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-----~---------------------------- 268 (509)
T 3ivr_A 222 LQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA-----P---------------------------- 268 (509)
T ss_dssp HHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC-----G----------------------------
T ss_pred HHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc-----c----------------------------
Confidence 5555544 44445899999999999999999999999999876320 0
Q ss_pred hHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEE
Q 005406 397 WDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIK 475 (698)
Q Consensus 397 ~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ 475 (698)
...+++|.++.||++ ++.+.+...+ ++++++.||+||++++++.....+ ...++|+|+++++++
T Consensus 269 -----------~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~G~p~~~~~~~ 333 (509)
T 3ivr_A 269 -----------AQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRD-RPKSAGRPLFWRTVA 333 (509)
T ss_dssp -----------GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGG-STTSCCEECTTCEEE
T ss_pred -----------cchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCcccc-CCCcccccCCCcEEE
Confidence 001589999999987 7788888877 899999999999998776654332 335699999999999
Q ss_pred EEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccC--CCeEecCCc
Q 005406 476 LVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK--KNIFKLAQG 553 (698)
Q Consensus 476 i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~--~d~ikls~G 553 (698)
|+| +++..++.++ .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+ ||+||+ +|
T Consensus 334 i~d-~~~~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~-~G 407 (509)
T 3ivr_A 334 VVD-AEDRPLPPGE---VGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKT-GG 407 (509)
T ss_dssp EEC-TTSCBCCTTC---CEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC-----------
T ss_pred EEC-CCCCCCCCCC---ceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEE-CC
Confidence 999 5567666665 89999999999999999999999999 5899999999999999999999999 999996 89
Q ss_pred eeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHH
Q 005406 554 EYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAV 630 (698)
Q Consensus 554 ~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 630 (698)
++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.++.. ...++|+++
T Consensus 408 ~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~-------------------------~~~~~l~~~ 462 (509)
T 3ivr_A 408 ENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES-------------------------IAADALAEF 462 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCC-------------------------CCHHHHHHH
Confidence 9999999999999999999999998653 467889988876420 113456666
Q ss_pred HHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406 631 GKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA 677 (698)
Q Consensus 631 ~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~ 677 (698)
++ .+|+.|++|+.|++++++| +|++||++|++|++.+++.
T Consensus 463 l~-~~L~~~~~P~~i~~v~~lP------~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 463 VA-SLIARYKKPKHVVFVEALP------KDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp -----------------------------------------------
T ss_pred HH-hhCcccCCCcEEEEecCCC------CCCCCCccHHHHHHHHhhc
Confidence 65 7899999999999999999 9999999999999998654
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=7e-77 Score=662.08 Aligned_cols=487 Identities=17% Similarity=0.189 Sum_probs=411.7
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCHhHHHHHHH
Q 005406 79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFH-GLQKGVRIGLYLINRPEWLIVDHA 157 (698)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~e~~~~~lA 157 (698)
+|+.++|+++++++||++|+.+. .+++||+||+++++++|++|++. |.++|++|+++++|+++|++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~---------~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ---------GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC---------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47899999999999999999653 25799999999999999999875 888999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHH
Q 005406 158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL 237 (698)
Q Consensus 158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (698)
|+++|++++|+++.++.+++.+++++++++++|++...... .. ........+.
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~---------------------~~~~~~~~~~ 124 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AV---------------------GQQIQTVSAE 124 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CC---------------------CCSSCEEEHH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------hc---------------------ccccceecHh
Confidence 99999999999999999999999999999999996543110 00 0112345667
Q ss_pred HHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHH
Q 005406 238 QLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIV 317 (698)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~ 317 (698)
++...............++++++|+|||||||.||||++||+++.+.+.+....+++.++|++++++|++|++++...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 204 (511)
T 3e7w_A 125 ELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP 204 (511)
T ss_dssp HHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHH
T ss_pred hhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHH
Confidence 76654433323334467899999999999999999999999999999988888889999999999999999999988899
Q ss_pred HHHhCcEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005406 318 SVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP 393 (698)
Q Consensus 318 ~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~ 393 (698)
+++.|+++++.+ .++..+++.++++++|++.++|+++..+.....
T Consensus 205 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------- 253 (511)
T 3e7w_A 205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------------- 253 (511)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------------
T ss_pred HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------------
Confidence 999999999987 488999999999999999999999988764210
Q ss_pred chhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCC-----CCCCCCccC
Q 005406 394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG-----DNLSGHVGS 467 (698)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~ 467 (698)
......+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++..... .....++|+
T Consensus 254 -----------~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 322 (511)
T 3e7w_A 254 -----------FSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGF 322 (511)
T ss_dssp -----------CSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE
T ss_pred -----------cccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcc
Confidence 0001125899999999999999999999988 89999999999998876654322 234567999
Q ss_pred CCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhccccc---CCCceecCcEEEEecCCcEEEEccC
Q 005406 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID---GDGWLHTGDIGLWLPGGRLKIIDRK 544 (698)
Q Consensus 468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~---~~gw~~TGDlg~~~~~G~l~i~GR~ 544 (698)
|+++++++|+| +++..++.++ .|||+|+||+++.|||++|+.|++.|. +++||+|||+|++ +||+|+|+||+
T Consensus 323 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~ 397 (511)
T 3e7w_A 323 AKPDMNIFIMD-EEGQPLPEGE---KGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRL 397 (511)
T ss_dssp ECTTCEEEEEC-TTSCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEES
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---ceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccc
Confidence 99999999999 5567766665 899999999999999999999999982 2237999999999 59999999999
Q ss_pred CCeEecCCceeecchHHHHHHhcCcCceeEEEEEcC---CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHH
Q 005406 545 KNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS---FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARA 621 (698)
Q Consensus 545 ~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (698)
||+||+ +|++|+|.|||++|.+||+|.+|+|++.+ .++.++|+|++++... . . ..
T Consensus 398 ~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~---------~---------~---~~ 455 (511)
T 3e7w_A 398 DFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEF---------E---------K---EF 455 (511)
T ss_dssp SSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCC---------S---------S---HH
T ss_pred cCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccc---------c---------c---hh
Confidence 999998 89999999999999999999999999854 3468999999886420 0 0 11
Q ss_pred HHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406 622 AVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA 677 (698)
Q Consensus 622 ~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~ 677 (698)
.+.++|+++++ .+|+.|++|+.|++++++| +|++|||+|++|++.+.+.
T Consensus 456 ~~~~~l~~~l~-~~L~~~~~P~~~~~v~~lP------~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 456 QLTSAIKKELA-ASLPAYMIPRKFIYQDHIQ------MTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp HHHHHHHHHHH-HHSCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-hhCchhhCCeeEEEeccCC------CCCCcCccHHHHHhHHhhh
Confidence 23566777775 6899999999999999999 9999999999999998764
No 17
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2.2e-77 Score=666.61 Aligned_cols=485 Identities=19% Similarity=0.237 Sum_probs=405.7
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHH
Q 005406 79 GTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHAC 158 (698)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~ 158 (698)
+|+.++|+++++++||++|+.+. + +++||+||+++++++|++|.+.|+++|++|+|+++|+++|++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999764 2 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee---
Q 005406 159 SAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS--- 235 (698)
Q Consensus 159 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~--- 235 (698)
+++|+++||+++.++.+++.+++++++++++|++...... ..+ .....
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~~~-----------------------~~~~~~~~ 122 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT------DLP-----------------------VRIVSEDN 122 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS------CCS-----------------------SEEEETHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc------ccc-----------------------cceechhh
Confidence 9999999999999999999999999999999987542110 000 01111
Q ss_pred HHHHHhcC-CCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH
Q 005406 236 YLQLQSQG-CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN 314 (698)
Q Consensus 236 ~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~ 314 (698)
+.++.... ...+.+.....++++++|+|||||||.||||++||+++.+.+.+....+++.++|++++++|++|++++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 202 (512)
T 3fce_A 123 LKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMD 202 (512)
T ss_dssp HHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHH
T ss_pred hhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHH
Confidence 22222111 11222334467899999999999999999999999999999988888889999999999999999999988
Q ss_pred HHHHHHhCcEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcC
Q 005406 315 QIVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSG 390 (698)
Q Consensus 315 ~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~ 390 (698)
.+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+......
T Consensus 203 ~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------- 255 (512)
T 3fce_A 203 IYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASF--------------------------- 255 (512)
T ss_dssp HHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTC---------------------------
T ss_pred HHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccc---------------------------
Confidence 899999999999987 4899999999999999999999999877542100
Q ss_pred CCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCC-----CCCCC
Q 005406 391 QTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD-----NLSGH 464 (698)
Q Consensus 391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~-----~~~~~ 464 (698)
.....+++|.+++||+++++++.+.+.+.+ ++++++.||+||++++++...... ....+
T Consensus 256 ---------------~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~ 320 (512)
T 3fce_A 256 ---------------SESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLP 320 (512)
T ss_dssp ---------------STTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCC
T ss_pred ---------------cchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCc
Confidence 001125899999999999999999999988 899999999999988766543322 35678
Q ss_pred ccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccc---cCCCceecCcEEEEecCCcEEEE
Q 005406 465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI---DGDGWLHTGDIGLWLPGGRLKII 541 (698)
Q Consensus 465 vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f---~~~gw~~TGDlg~~~~~G~l~i~ 541 (698)
+|+|.++++++|+| +++..++.++ .|||+|+||+++.|||++|+.|++.| +++|||+|||+|++ +||+|+|+
T Consensus 321 ~G~~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~ 395 (512)
T 3fce_A 321 VGYCKSDCRLLIMK-EDGTIAPDGE---KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYN 395 (512)
T ss_dssp CEEECTTCEEEEEC-SSSCBCCTTS---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEE
T ss_pred cccccCCcEEEEEC-CCCCCCCCCC---eEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEe
Confidence 99999999999999 6667666665 89999999999999999999999988 56789999999999 79999999
Q ss_pred ccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHH
Q 005406 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPR 618 (698)
Q Consensus 542 GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (698)
||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.+... .+
T Consensus 396 GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~------------------~~-- 454 (512)
T 3fce_A 396 GRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSF------------------EK-- 454 (512)
T ss_dssp EEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCC------------------SS--
T ss_pred cccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccc------------------cc--
Confidence 999999998 899999999999999999999999998543 467899999876320 01
Q ss_pred HHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406 619 ARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA 677 (698)
Q Consensus 619 ~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~ 677 (698)
...+.++|+++++ .+|+.|++|+.|++++++| +|++||++|++|++.|+++
T Consensus 455 -~~~~~~~l~~~l~-~~L~~~~~P~~~~~~~~lP------~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 455 -EFKLTSAIKKELN-ERLPNYMIPRKFMYQSSIP------MTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp -HHHHHHHHHHHHH-TTSCGGGSCSEEEECSCCC------BCTTSSBCHHHHHHHHHC-
T ss_pred -hhhhHHHHHHHHH-hhCchhcCCeEEEEecccC------CCCCcChHHHHHHhhhhhc
Confidence 0123566777775 7899999999999999999 9999999999999998753
No 18
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.7e-76 Score=662.18 Aligned_cols=499 Identities=21% Similarity=0.298 Sum_probs=406.9
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406 78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA 157 (698)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA 157 (698)
..++.++|+++++ +||++|+.+. + +.+||+||+++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus 23 ~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 92 (529)
T 2v7b_A 23 FNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLG 92 (529)
T ss_dssp CCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHH
T ss_pred eeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 4568999999999 9999999653 1 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCce-eEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406 158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSV-HLIVVVGGKDEHLPSLPSTSGVKLISY 236 (698)
Q Consensus 158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (698)
|+++|+++||+++.++.+++.+++++++++++|++......+.......+.+ ..++.++.... .+.....+
T Consensus 93 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 164 (529)
T 2v7b_A 93 ALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRES--------EPRLAPLF 164 (529)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC--------------CCCBH
T ss_pred HHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEeccccc--------ccccccch
Confidence 9999999999999999999999999999999999988776666554444444 44555443211 00011356
Q ss_pred HHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHH-HHHHHhcccccccCCCcEEEEcCChhhHHHHHH-
Q 005406 237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNL-ISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN- 314 (698)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~- 314 (698)
+++...... ..+.....++++++|+|||||||.||||++||+++ .+........+++.++|++++++|++|.+++..
T Consensus 165 ~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 243 (529)
T 2v7b_A 165 EELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNG 243 (529)
T ss_dssp HHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHH
T ss_pred hhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHH
Confidence 776653321 12233467899999999999999999999999999 666666666678899999999999999999876
Q ss_pred HHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005406 315 QIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT 392 (698)
Q Consensus 315 ~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~ 392 (698)
.+.+++.|+++++.+ +++..+++.++++++|+++++|+++..+..... .
T Consensus 244 ~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------------------~ 294 (529)
T 2v7b_A 244 LTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN-----------------------------L 294 (529)
T ss_dssp THHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-----------------------------C
T ss_pred HHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-----------------------------c
Confidence 567899999999873 799999999999999999999999988764200 0
Q ss_pred CchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCc
Q 005406 393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPAC 472 (698)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ 472 (698)
. ...+ .++|.+++||+++++++.+++.+.+|++++++||+||++.+++.........+++|+|++++
T Consensus 295 ~-~~~~------------~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~ 361 (529)
T 2v7b_A 295 P-ARAD------------VAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGY 361 (529)
T ss_dssp C-CGGG------------CCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTTC
T ss_pred c-cccC------------CceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCCC
Confidence 0 0000 37999999999999999999999899999999999999766555555556678999999999
Q ss_pred EEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCC
Q 005406 473 EIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQ 552 (698)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~ 552 (698)
+++|+| ++++.++.++ .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+||+||+ +
T Consensus 362 ~~~i~d-~~g~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~ 435 (529)
T 2v7b_A 362 EIELRD-EAGHAVPDGE---VGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKV-S 435 (529)
T ss_dssp EEEEEC-TTSCBCCTTS---CEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC---
T ss_pred EEEEEC-CCCCCCCCCC---ccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCccCCeEEE-C
Confidence 999999 6667776665 89999999999999999999999999 5899999999999999999999999999997 8
Q ss_pred ceeecchHHHHHHhcCcCceeEEEEEcC--CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHH
Q 005406 553 GEYVAPEKIENVYAKCKFVLQCFIYGDS--FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAV 630 (698)
Q Consensus 553 G~~v~p~eIE~~l~~~p~V~~~~V~g~~--~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 630 (698)
|++|+|.|||++|.+||+|.+|+|++.. .++.++|+|++.++. . .++ ...++|+++
T Consensus 436 G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~----------~--------~~~----~~~~~l~~~ 493 (529)
T 2v7b_A 436 GQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREF----------A--------PSE----ILAEELKAF 493 (529)
T ss_dssp --CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTC----------C--------CCH----HHHHHHHHH
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCC----------C--------cch----hHHHHHHHH
Confidence 9999999999999999999999999862 346789999987631 0 011 124567777
Q ss_pred HHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHH
Q 005406 631 GKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKE 672 (698)
Q Consensus 631 ~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~ 672 (698)
++ .+|+.|++|+.|++++++| +|++||++|++|++
T Consensus 494 l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 494 VK-DRLAPHKYPRDIVFVDDLP------KTATGKIQRFKLRE 528 (529)
T ss_dssp HH-TTSCTTTSCSEEEEESCCC------BCTTSCBCHHHHHC
T ss_pred HH-hhcchhhCCeEEEEeccCC------CCCccchhHHhHhh
Confidence 75 7899999999999999999 99999999999985
No 19
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=3.2e-76 Score=670.94 Aligned_cols=501 Identities=20% Similarity=0.247 Sum_probs=421.1
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406 77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH 156 (698)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l 156 (698)
...|++++|+++++ ||++|+.+. .+.+||+||+++++++|++|++.|+++|++|+|+++|+++|++++|
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 45789999999887 999999753 2569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccch-----HHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCc
Q 005406 157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTL-----NTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGV 231 (698)
Q Consensus 157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~ 231 (698)
||+++|+++||+++.++.+++.++++++++++++++.... ..+.......+.++.+...+....
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 9999999999999999999999999999999999987653 223333334555665655543211
Q ss_pred eEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHH
Q 005406 232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYE 311 (698)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~ 311 (698)
..+.+....... .....+..+++++||+|||||||.||||+++|+++++.+......+++.++|++++++|++|.++
T Consensus 163 --~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 239 (617)
T 3rg2_A 163 --HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYA 239 (617)
T ss_dssp --TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred --cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhh
Confidence 234444433222 22334567899999999999999999999999999999988888889999999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005406 312 RAN--QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV 388 (698)
Q Consensus 312 ~~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~ 388 (698)
+.. .+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+.+.......
T Consensus 240 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------- 297 (617)
T 3rg2_A 240 MSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES---------------------- 297 (617)
T ss_dssp HHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC----------------------
T ss_pred hhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc----------------------
Confidence 875 788999999999987 7899999999999999999999999988764321100
Q ss_pred cCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC-CCCCCccC
Q 005406 389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD-NLSGHVGS 467 (698)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (698)
. ...+++|.+++||+++++++.++|...+|++++|.||+||++..++...... ....++|.
T Consensus 298 ----~--------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 359 (617)
T 3rg2_A 298 ----R--------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGY 359 (617)
T ss_dssp ----T--------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCE
T ss_pred ----c--------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCc
Confidence 0 0015899999999999999999999989999999999999986554332211 22357899
Q ss_pred CC-CCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCC
Q 005406 468 PN-PACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKN 546 (698)
Q Consensus 468 p~-~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d 546 (698)
|+ ++++++|+| ++++.++.|. .|||||+|+++++|||++|+.|+++|+.+|||+|||+|++++||.|+|+||+||
T Consensus 360 p~~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd 435 (617)
T 3rg2_A 360 PMCPDDEVWVAD-AEGNPLPQGE---VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKD 435 (617)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSS
T ss_pred cCCCCceEEEEC-CCCCCCCCCC---ceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCC
Confidence 97 788999999 6677777665 899999999999999999999999999999999999999999999999999999
Q ss_pred eEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHH
Q 005406 547 IFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAV 623 (698)
Q Consensus 547 ~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 623 (698)
+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|++++.+.. +
T Consensus 436 ~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~----------~----------------- 487 (617)
T 3rg2_A 436 QINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL----------R----------------- 487 (617)
T ss_dssp EEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC----------C-----------------
T ss_pred EEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC----------C-----------------
Confidence 9997 899999999999999999999999998542 46789999887521 1
Q ss_pred HHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHH
Q 005406 624 LAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISN 680 (698)
Q Consensus 624 ~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ 680 (698)
..++++++++..||.|++|+.|++++++| +|++||++|++|++.+.+....
T Consensus 488 ~~~l~~~l~~~~lp~~~vP~~~~~v~~lP------~t~~GKidR~~L~~~~~~~~~~ 538 (617)
T 3rg2_A 488 AVQVRRFLREQGIAEFKLPDRVECVDSLP------LTAVGKVDKKQLRQWLASRASA 538 (617)
T ss_dssp HHHHHHHHHTTTCCGGGSCSEEEECSCCC------BCTTSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccccCCcEEEEecccC------CCCCCCCcHHHHHHHHhccccc
Confidence 34566666544799999999999999999 9999999999999998776543
No 20
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=8.6e-78 Score=677.83 Aligned_cols=478 Identities=18% Similarity=0.213 Sum_probs=319.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005406 76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD 155 (698)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~ 155 (698)
+...+++++|+++++++||++|+.+. .+.+||+||+++++++|++|+++|+++||+|+|+++|+++|++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE---------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC---------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999753 256999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406 156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235 (698)
Q Consensus 156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (698)
|||+++|+++||+++.++.+++.+++++++++++|++..... .++....++..+...
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~---------------- 199 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSG-------RLTGTTTLYVEDEAA---------------- 199 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTT-------SSCSSEEEECCC-------------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhh-------cccCCcceeeecccc----------------
Confidence 999999999999999999999999999999999999875432 222222222211100
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHH
Q 005406 236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQ 315 (698)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (698)
.............++++++|+|||||||.||||++||+++.+.+.. ...++++++|++++++|++|..+....
T Consensus 200 ------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 272 (570)
T 4gr5_A 200 ------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLEL 272 (570)
T ss_dssp ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHH
T ss_pred ------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHH
Confidence 0001112223467899999999999999999999999999877655 445678899999999999998888788
Q ss_pred HHHHHhCcEEEEeC---CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCC
Q 005406 316 IVSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQT 392 (698)
Q Consensus 316 ~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~ 392 (698)
+.+++.|+++++.+ .++..+++.|+++++|++.++|+++..|.+.....
T Consensus 273 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------------------- 324 (570)
T 4gr5_A 273 FGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEA---------------------------- 324 (570)
T ss_dssp HHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGG----------------------------
T ss_pred HHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhh----------------------------
Confidence 88999999999986 58999999999999999999999999887631100
Q ss_pred CchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCC----CCCCCCccC
Q 005406 393 PSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG----DNLSGHVGS 467 (698)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~----~~~~~~vG~ 467 (698)
.+++|.+++||++++++..+.+.+.+ +++++++||+||++++++..... .....++|+
T Consensus 325 -----------------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 387 (570)
T 4gr5_A 325 -----------------FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387 (570)
T ss_dssp -----------------GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBE
T ss_pred -----------------CCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccce
Confidence 15899999999999999998888776 89999999999998776644321 234567999
Q ss_pred CCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccC--------CCceecCcEEEEecCCcEE
Q 005406 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDG--------DGWLHTGDIGLWLPGGRLK 539 (698)
Q Consensus 468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~--------~gw~~TGDlg~~~~~G~l~ 539 (698)
|+++++++|+| +++..++.++ .|||+|+|++++.|||++|+.|+++|.. +|||+|||+|++|+||+|+
T Consensus 388 p~~~~~v~i~d-~~~~~~~~G~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~ 463 (570)
T 4gr5_A 388 PLAGKRAYVLD-DDLKPAANGA---LGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLE 463 (570)
T ss_dssp ECTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEE
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---cEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEE
Confidence 99999999999 5667666665 8999999999999999999999999854 3799999999999999999
Q ss_pred EEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCC
Q 005406 540 IIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCND 616 (698)
Q Consensus 540 i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (698)
|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.+...
T Consensus 464 ~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~-------------------- 522 (570)
T 4gr5_A 464 YVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADA-------------------- 522 (570)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCC--------------------
Confidence 99999999997 899999999999999999999999998653 467899998765320
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHH
Q 005406 617 PRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKER 673 (698)
Q Consensus 617 ~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~ 673 (698)
....++|+++++ .+|+.|++|+.|++++++| +|++|||+|++|++.
T Consensus 523 ----~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 523 ----PPDAAELRRHVA-EALPAYMVPVECVPVDELP------RTPNGKLDRRALTGS 568 (570)
T ss_dssp ---------------------------------------------------------
T ss_pred ----CcCHHHHHHHHH-hhCccccCCcEEEEcccCC------CCCCcCcchHhhhcc
Confidence 012456667775 7899999999999999999 999999999999864
No 21
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=4e-77 Score=670.10 Aligned_cols=476 Identities=19% Similarity=0.265 Sum_probs=397.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005406 76 PEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD 155 (698)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~ 155 (698)
+...|+.++|+++++++||++|+.+. .+++||+||.++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 106 (563)
T 1amu_A 36 PRDKTIHQLFEEQVSKRPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 106 (563)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHCCCCeEEEeC---------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34578999999999999999999653 256999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406 156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235 (698)
Q Consensus 156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (698)
|||+++|+++||+++.++.+++.+++++++++++|++.+....+... .....+..++....
T Consensus 107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~----~~~~~~~~~~~~~~--------------- 167 (563)
T 1amu_A 107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI----QFNGQVEIFEEDTI--------------- 167 (563)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTS----CCCSEEEECCCSTT---------------
T ss_pred HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhc----cccCceeeecchhh---------------
Confidence 99999999999999999999999999999999999998765443221 11112332221100
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHH
Q 005406 236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQ 315 (698)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (698)
... .......+..++++++|+|||||||.||||++||+++.+.+......++++++|++++++|++|.+++...
T Consensus 168 -----~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 241 (563)
T 1amu_A 168 -----KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 241 (563)
T ss_dssp -----TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred -----ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence 000 00111234568999999999999999999999999999988877777889999999999999999999888
Q ss_pred HHHHHhCcEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCC
Q 005406 316 IVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQ 391 (698)
Q Consensus 316 ~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 391 (698)
+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+...
T Consensus 242 ~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------------- 290 (563)
T 1amu_A 242 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------------------------------- 290 (563)
T ss_dssp HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------------------
T ss_pred HHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------------------
Confidence 89999999999987 5889999999999999999999998665320
Q ss_pred CCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCC---CCCCCccCC
Q 005406 392 TPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGD---NLSGHVGSP 468 (698)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p 468 (698)
...++|.+++||+++++++.+.|.. .++++++||+||++++++...... ...+++|+|
T Consensus 291 -----------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p 351 (563)
T 1amu_A 291 -----------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAP 351 (563)
T ss_dssp -----------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEE
T ss_pred -----------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCCCcccce
Confidence 0158999999999999999998876 478999999999987766543322 345789999
Q ss_pred CCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhccccc------CCCceecCcEEEEecCCcEEEEc
Q 005406 469 NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID------GDGWLHTGDIGLWLPGGRLKIID 542 (698)
Q Consensus 469 ~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~------~~gw~~TGDlg~~~~~G~l~i~G 542 (698)
+++++++|+| +++..++.++ .|||+|+|+++++|||++|+.|+++|. ++|||+|||+|++|+||+|+|+|
T Consensus 352 ~~~~~v~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~G 427 (563)
T 1amu_A 352 IQNTQIYIVD-ENLQLKSVGE---AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLG 427 (563)
T ss_dssp CTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEEC-CCcCCCCCCC---cEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEec
Confidence 9999999999 5666666665 899999999999999999999999984 34699999999999999999999
Q ss_pred cCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHH
Q 005406 543 RKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRA 619 (698)
Q Consensus 543 R~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (698)
|+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++... .+
T Consensus 428 R~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~----------~~------------- 483 (563)
T 1amu_A 428 RIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH----------IP------------- 483 (563)
T ss_dssp EGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC----------CC-------------
T ss_pred cccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCC----------CC-------------
Confidence 99999997 899999999999999999999999998653 4678999997642 11
Q ss_pred HHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHH
Q 005406 620 RAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERF 674 (698)
Q Consensus 620 ~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~ 674 (698)
.++|+++++ .+|+.|++|+.|++++++| +|++||++|++|++.+
T Consensus 484 ----~~~l~~~l~-~~L~~y~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 484 ----LEQLRQFSS-EELPTYMIPSYFIQLDKMP------LTSNGKIDRKQLPEPD 527 (563)
T ss_dssp ----HHHHHHHHH-HHSCGGGSCSEEEECSSCC------BCTTSSBCGGGSCCCC
T ss_pred ----HHHHHHHHH-hhCchhhCCcEEEEecccC------CCCCcChhHHhcCCcc
Confidence 345666665 6799999999999999999 9999999999998754
No 22
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.7e-77 Score=716.42 Aligned_cols=519 Identities=24% Similarity=0.332 Sum_probs=344.6
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005406 75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV 154 (698)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~ 154 (698)
.|...|++++|.++++++||++|+++. +. .+++||+||+++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 57 ~p~~~tl~~~l~~~a~~~pd~~Al~~~---~~----~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~ 129 (979)
T 3tsy_A 57 IPNHLSLHDYIFQNISEFATKPCLING---PT----GHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLS 129 (979)
T ss_dssp CCTTSCHHHHHTTTGGGTTTSEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEEC---CC----CcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHH
Confidence 345689999999999999999999763 21 25799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEe
Q 005406 155 DHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI 234 (698)
Q Consensus 155 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (698)
+|||+++|+++||++|.++.+++.+++++++++++|++......+....... .. .++.+++..... ......
T Consensus 130 ~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~------~~~~~~ 201 (979)
T 3tsy_A 130 FLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDDNESVP------IPEGCL 201 (979)
T ss_dssp HHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCCCTTSC------CCTTEE
T ss_pred HHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCCccccc------CCcccc
Confidence 9999999999999999999999999999999999999987765555443322 22 244444321100 011235
Q ss_pred eHHHHHhcCCC--CCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccc----ccccCCCcEEEEcCChhh
Q 005406 235 SYLQLQSQGCS--SPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL----MVQFYPSDIYMSYLPLAH 308 (698)
Q Consensus 235 ~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h 308 (698)
.+.++...... ...+.....++++++|+|||||||.||||+++|+++++.+..... .+.+.++|++++++|++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 281 (979)
T 3tsy_A 202 RFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFH 281 (979)
T ss_dssp EGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSS
T ss_pred cHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHH
Confidence 56655443221 112334567899999999999999999999999999988765443 356789999999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005406 309 IYERAN-QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA 386 (698)
Q Consensus 309 ~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~ 386 (698)
.+++.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+.....
T Consensus 282 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------- 339 (979)
T 3tsy_A 282 IYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE---------------------- 339 (979)
T ss_dssp HHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGG----------------------
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcccc----------------------
Confidence 999976 677899999999987 79999999999999999999999998887631100
Q ss_pred HHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccC-----CCCC
Q 005406 387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAID-----KGDN 460 (698)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~-----~~~~ 460 (698)
....+++|.+++||+++++++.+++.+.+ ++++++.||+||++++++... +...
T Consensus 340 --------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~ 399 (979)
T 3tsy_A 340 --------------------KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPV 399 (979)
T ss_dssp --------------------TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCC
T ss_pred --------------------CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCcccc
Confidence 00115899999999999999999999988 899999999999987655431 2234
Q ss_pred CCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEE
Q 005406 461 LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKI 540 (698)
Q Consensus 461 ~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i 540 (698)
..+++|+|+++++++|+|++++..++.++ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||.|+|
T Consensus 400 ~~~~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~ 476 (979)
T 3tsy_A 400 KSGACGTVVRNAEMKIVDPDTGDSLSRNQ---PGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFI 476 (979)
T ss_dssp CTTCCCEECSSCEEEEECTTSCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred CCCCcCcccCCcEEEEEeCCCCCCCCCCC---ccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEE
Confidence 67899999999999999977777777765 899999999999999999999999999999999999999999999999
Q ss_pred EccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCH
Q 005406 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDP 617 (698)
Q Consensus 541 ~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (698)
+||+||+||+ +|++|+|.|||++|.+||+|.+++|++.++ ++.++|+|++.++.
T Consensus 477 ~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~---------------------- 533 (979)
T 3tsy_A 477 VDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDS---------------------- 533 (979)
T ss_dssp EEESCC--------------------------------------------------------------------------
T ss_pred ecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCC----------------------
Confidence 9999999997 899999999999999999999999998543 46789999876632
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHHHHhccc
Q 005406 618 RARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISNMYAELA 686 (698)
Q Consensus 618 ~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ly~~~~ 686 (698)
....++|+++++ .+|+.|++|+.|++++++| +|++||++|++|++.|.+.+...|...+
T Consensus 534 ---~~~~~~l~~~l~-~~l~~~~~p~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~~~~~~~e 592 (979)
T 3tsy_A 534 ---ELSEDDVKQFVS-KQVVFYKRINKVFFTESIP------KAPSGKILRKDLRAKLANGLGSGMASVE 592 (979)
T ss_dssp -----------------------------------------------------------------CCHH
T ss_pred ---CCCHHHHHHHHH-HhcccccCCeEEEEeCCcC------cCCCCCeeHHHHHHHHHhhcCCcccccc
Confidence 011345666665 7899999999999999999 9999999999999999999988887644
No 23
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=9.8e-77 Score=672.49 Aligned_cols=475 Identities=19% Similarity=0.163 Sum_probs=387.7
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406 77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH 156 (698)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l 156 (698)
...|++++|+++++++||++|+.+. .+.+||+||+++++++|++|++.|+++|++|+|+++|+++|++++|
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l 95 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDR---------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL 95 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC---------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4679999999999999999999763 2569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeH
Q 005406 157 ACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISY 236 (698)
Q Consensus 157 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (698)
||+++|+++||++|.++.+++.++++++++++++++...... ...... ..+
T Consensus 96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~-------~~~~~~----------------------~~~ 146 (620)
T 4dg8_A 96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTP-------ANGLPC----------------------VPV 146 (620)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCC-------CTTSCE----------------------EEG
T ss_pred HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccc-------ccCCce----------------------eee
Confidence 999999999999999999999999999999999976543211 000110 011
Q ss_pred HHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHH
Q 005406 237 LQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQI 316 (698)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 316 (698)
.... ............+++++||+|||||||.||||+++|+++.+.+.. ...+++.++|++++++|++|++++...+
T Consensus 147 ~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 223 (620)
T 4dg8_A 147 RHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIW 223 (620)
T ss_dssp GGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHH
T ss_pred ccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHH
Confidence 1000 001111223356899999999999999999999999999887765 4567889999999999999999999999
Q ss_pred HHHHhCcEEEEeC---CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005406 317 VSVYYGVAVGFYQ---GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP 393 (698)
Q Consensus 317 ~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~ 393 (698)
.+++.|+++++.+ .++..+.+.|+++++|++.++|+++..+.+...
T Consensus 224 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------------- 272 (620)
T 4dg8_A 224 GALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------------- 272 (620)
T ss_dssp HHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-------------------------------
T ss_pred HHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-------------------------------
Confidence 9999999999865 689999999999999999999999998865200
Q ss_pred chhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCC----CCCCCccCC
Q 005406 394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD----NLSGHVGSP 468 (698)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~----~~~~~vG~p 468 (698)
...+++|.+++||++++++..+.+...+ +++++|.||+||++++++...... ....++|+|
T Consensus 273 --------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p 338 (620)
T 4dg8_A 273 --------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKA 338 (620)
T ss_dssp --------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEE
T ss_pred --------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceec
Confidence 0015899999999999998888776655 899999999999998766543222 445789999
Q ss_pred CCCcEEEEEecCCCCC-CCCCCCCCccEEEEeCCCccccccCChhhhcccccCC-------CceecCcEEEEecCCcEEE
Q 005406 469 NPACEIKLVDVPEMNY-TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGD-------GWLHTGDIGLWLPGGRLKI 540 (698)
Q Consensus 469 ~~~~~v~i~d~~~~~~-~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~-------gw~~TGDlg~~~~~G~l~i 540 (698)
+++++++|+|. ++.. ++.+. .|||||+|+++++|||++|+.|+++|..+ +||+|||+|++++||+|+|
T Consensus 339 ~~~~~~~i~d~-~~~~~~~~g~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~ 414 (620)
T 4dg8_A 339 IAGTAVLLLDE-HGQEIAEPDR---AGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRF 414 (620)
T ss_dssp CTTEEEEEECT-TSCBCCSSSC---CEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEE
T ss_pred ccCcEEEEECc-cCCCCCCCCC---ceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEE
Confidence 99999999994 4443 44444 89999999999999999999999999543 7999999999999999999
Q ss_pred EccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCCC--CeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHH
Q 005406 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSFN--SCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPR 618 (698)
Q Consensus 541 ~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (698)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. ..++++++...+.
T Consensus 415 ~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~----------------------- 470 (620)
T 4dg8_A 415 IGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADA----------------------- 470 (620)
T ss_dssp EECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTC-----------------------
T ss_pred EccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHH-----------------------
Confidence 9999999998 8999999999999999999999999985432 4556665544321
Q ss_pred HHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHHHHH
Q 005406 619 ARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKAISN 680 (698)
Q Consensus 619 ~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~i~~ 680 (698)
+.+.+. .+||.|++|+.|++++++| +|++||++|++|++.|.+.++.
T Consensus 471 ----~~~~l~-----~~Lp~y~~P~~~~~v~~lP------~t~~GKidR~~L~~~~~~~~~~ 517 (620)
T 4dg8_A 471 ----SPQALL-----RQLPTWQRPHACVRVEALP------LTAHGKLDRAALLRRLEEPLER 517 (620)
T ss_dssp ----CCHHHH-----HHSCGGGSCSEEEECSSCC------CC----CCHHHHHHHTCSCC--
T ss_pred ----HHHHHH-----HhChhhcCCcEEEEECcCC------CCcccCHhHHHHhhcccccccc
Confidence 012221 4689999999999999999 9999999999999887654433
No 24
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.5e-76 Score=661.64 Aligned_cols=490 Identities=19% Similarity=0.197 Sum_probs=401.0
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHH
Q 005406 78 IGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHA 157 (698)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA 157 (698)
..|+.++|++.++++||++|+.+. .+++||+||.++++++|++|++.|+++||+|+|+++|+++|++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL---------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC---------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 568999999999999999999653 25699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHH
Q 005406 158 CSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYL 237 (698)
Q Consensus 158 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (698)
|+++|+++||+++.++.+++.+++++++++++|++.+....+ .+.....+.
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~-----------------------------~~~~~~~~~ 124 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI-----------------------------EGISLVSLS 124 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC-----------------------------TTSEEEEHH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc-----------------------------ccCcccchh
Confidence 999999999999999999999999999999999986532110 112234444
Q ss_pred HHHhcC--CCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc--cccCCCcEEEEcCChhhHHHHH
Q 005406 238 QLQSQG--CSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM--VQFYPSDIYMSYLPLAHIYERA 313 (698)
Q Consensus 238 ~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~~pl~h~~~~~ 313 (698)
++.... ...........++++++|+|||||||.||||++||+++++.+.+.... +++.+++++++.+|++|.+++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 204 (521)
T 3l8c_A 125 EIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM 204 (521)
T ss_dssp HHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH
T ss_pred hhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH
Confidence 443211 111122345678999999999999999999999999999887766554 6778999999999999999988
Q ss_pred HHHHHHHhCcEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHc
Q 005406 314 NQIVSVYYGVAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVS 389 (698)
Q Consensus 314 ~~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~ 389 (698)
..+.+++.|+++++.+ .++..+++.+.++++|++.++|+++..+......
T Consensus 205 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------- 258 (521)
T 3l8c_A 205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF-------------------------- 258 (521)
T ss_dssp HHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTC--------------------------
T ss_pred HHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc--------------------------
Confidence 8889999999999887 3899999999999999999999999877541000
Q ss_pred CCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCCC-----CCCC
Q 005406 390 GQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKGD-----NLSG 463 (698)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~-----~~~~ 463 (698)
.....+++|.+++||+++++++.+.+.+.+ ++++++.||+||++++++...... ...+
T Consensus 259 ----------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 322 (521)
T 3l8c_A 259 ----------------CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRL 322 (521)
T ss_dssp ----------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSC
T ss_pred ----------------ccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCcc
Confidence 000115899999999999999999998887 899999999999988766543221 3457
Q ss_pred CccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccc---cCCCceecCcEEEEecCCcEEE
Q 005406 464 HVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVI---DGDGWLHTGDIGLWLPGGRLKI 540 (698)
Q Consensus 464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f---~~~gw~~TGDlg~~~~~G~l~i 540 (698)
++|+|+++++++|+| +++..++.++ .|||+|+||+++.|||++|+.|++.| +++|||+|||+|++|+||+|+|
T Consensus 323 ~vG~p~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~ 398 (521)
T 3l8c_A 323 PIGYPKPDSPTYIID-EDGKELSSGE---QGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLY 398 (521)
T ss_dssp EEEEECTTSCEEEEC-TTSCBCCTTC---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEE
T ss_pred ccccccCCCEEEEEC-CCcCCCCCCC---ceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEE
Confidence 899999999999999 5666666665 89999999999999999999999988 6788999999999999999999
Q ss_pred EccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC----CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCC
Q 005406 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF----NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCND 616 (698)
Q Consensus 541 ~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~----~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (698)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++..+ ++.++|+|++.++... . ...
T Consensus 399 ~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~--------------~-~~~ 462 (521)
T 3l8c_A 399 GGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKE--------------R-FDR 462 (521)
T ss_dssp EEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGG--------------G-CSS
T ss_pred eCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccc--------------c-ccc
Confidence 9999999997 899999999999999999999999998532 3678999998874210 0 000
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406 617 PRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA 677 (698)
Q Consensus 617 ~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~ 677 (698)
...+.++|+++++ .+|+.|++|+.|++++++| +|++|||+|++|++.|+++
T Consensus 463 ---~~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~GKidr~~L~~~~~~~ 513 (521)
T 3l8c_A 463 ---ELELTKAIKASVK-DHMMSYMMPSKFLYRDSLP------LTPNGKIDIKTLINEVNNR 513 (521)
T ss_dssp ---HHHHHHHHHHHSG-GGSCGGGSCSEEEECSSCC------BCTTSSBCHHHHHHHTC--
T ss_pred ---chhhHHHHHHHHH-hhCccccCCeEEEEecccC------CCCCcCccHHHHhhhhhcC
Confidence 0134677888886 7899999999999999999 9999999999999998654
No 25
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=4.7e-76 Score=653.41 Aligned_cols=478 Identities=22% Similarity=0.277 Sum_probs=379.5
Q ss_pred CCCCHHHHHHHHHHhCCC-CCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005406 77 EIGTLHDNFIYAVENYPD-YKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD 155 (698)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~ 155 (698)
++.|+.++|.++++++|+ ++|+.+. .+.+||+||.++++++|++|. .|++|+|+++|+++|++++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~---------~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~ 85 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFG---------ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAV 85 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEET---------TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHH
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEEC---------CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHH
Confidence 467888889999999887 9999753 257999999999999999875 3789999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406 156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235 (698)
Q Consensus 156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (698)
|||+++|+++|||++.++.+++.+++++++++++|++.+... ......+..+. ++...
T Consensus 86 la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~-~~~~~---------------- 143 (505)
T 3nyq_A 86 VAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVD-VDVRA---------------- 143 (505)
T ss_dssp HHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEE-CCTTC----------------
T ss_pred HHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhccccccc-ccccc----------------
Confidence 999999999999999999999999999999999999865210 00111222211 11100
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHH-
Q 005406 236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERAN- 314 (698)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~- 314 (698)
....+.....++++++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++..
T Consensus 144 ---------~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~ 214 (505)
T 3nyq_A 144 ---------RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLG 214 (505)
T ss_dssp ---------CCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTT
T ss_pred ---------ccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHH
Confidence 0112223457899999999999999999999999999999988888889999999999999999999876
Q ss_pred HHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCC
Q 005406 315 QIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTP 393 (698)
Q Consensus 315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~ 393 (698)
.+.+++.|+++++.+ +++..+++.+ ++++|+++++|+++..+.+.+.... ...
T Consensus 215 ~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~----~~~--------------------- 268 (505)
T 3nyq_A 215 ILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADP----ELA--------------------- 268 (505)
T ss_dssp THHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCH----HHH---------------------
T ss_pred HHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCc----hhh---------------------
Confidence 788999999999887 7899999999 8899999999999998876422110 000
Q ss_pred chhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcE
Q 005406 394 SKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACE 473 (698)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~ 473 (698)
...+++|.+++||+++++++.+++...+|++++|.||+||+++.++.........+++|+|+++++
T Consensus 269 --------------~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~ 334 (505)
T 3nyq_A 269 --------------KALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVE 334 (505)
T ss_dssp --------------HHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCE
T ss_pred --------------cccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCE
Confidence 000378999999999999999999998999999999999999877766655667789999999999
Q ss_pred EEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccC-CCeEecCC
Q 005406 474 IKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRK-KNIFKLAQ 552 (698)
Q Consensus 474 v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~-~d~ikls~ 552 (698)
++|+| +++..++...+++.|||+|+|++++.|||++|+.|+++|..+|||+|||+|++|+||.|+|+||+ ||+||+ +
T Consensus 335 ~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~-~ 412 (505)
T 3nyq_A 335 LRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKS-G 412 (505)
T ss_dssp EEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEE-T
T ss_pred EEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEe-C
Confidence 99999 45555554333458999999999999999999999999999999999999999999999999998 599997 8
Q ss_pred ceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005406 553 GEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNA 629 (698)
Q Consensus 553 G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 629 (698)
|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.+... .. ..++|++
T Consensus 413 G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~-------~~-----------------~~~~l~~ 468 (505)
T 3nyq_A 413 GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA-------PP-----------------ALGTLAD 468 (505)
T ss_dssp TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTS-------CC-----------------CHHHHHH
T ss_pred CEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCC-------CC-----------------CHHHHHH
Confidence 99999999999999999999999998543 468999999875210 00 1345666
Q ss_pred HHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHH
Q 005406 630 VGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKE 672 (698)
Q Consensus 630 ~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~ 672 (698)
+++ .+|+.|++|+.|++++++| +|++||++|++|++
T Consensus 469 ~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 469 HVA-ARLAPHKRPRVVRYLDAVP------RNDMGKIMKRALNR 504 (505)
T ss_dssp HHH-HHTCGGGSCSEEEECSCCC------C-------------
T ss_pred HHH-hhCCCCcCccEEEEECCCC------CCCCcCeeHHhhcc
Confidence 665 6799999999999999999 99999999999986
No 26
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=7.5e-76 Score=652.65 Aligned_cols=490 Identities=20% Similarity=0.225 Sum_probs=376.2
Q ss_pred CHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 005406 80 TLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACS 159 (698)
Q Consensus 80 tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~ 159 (698)
|+.++|+++++++||++|+.+. + +++||+||+++++++|++|++. +||+|+|+++|+++|++++|||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 5678899999999999999653 2 4699999999999999999986 89999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEe-eHHH
Q 005406 160 AYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLI-SYLQ 238 (698)
Q Consensus 160 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~ 238 (698)
++|++++|+++.++.+++.+++++++++++|++........... ....+..+.......... ......... ..+.
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 145 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIV-SLDDIEFAGRDITTNGLL---DNTMGIQYDTSNET 145 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEE-ETTC-------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccc-ccccceeeeeeccccccc---ccccccccccchhh
Confidence 99999999999999999999999999999999876543321111 011111111100000000 000000000 0011
Q ss_pred HHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHH
Q 005406 239 LQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVS 318 (698)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~ 318 (698)
+...............++++++|+|||||||.||||++||+++.+.+......++++++|++++++|++|++++...+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 225 (501)
T 3ipl_A 146 VVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRA 225 (501)
T ss_dssp ----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred ccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHH
Confidence 11101000112234578999999999999999999999999999999888888899999999999999999999988899
Q ss_pred HHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhh
Q 005406 319 VYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMW 397 (698)
Q Consensus 319 l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~ 397 (698)
++.|+++++.+ +++..+++.++++++|+++++|+++..|.+....
T Consensus 226 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------- 271 (501)
T 3ipl_A 226 VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------------- 271 (501)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------------
T ss_pred HHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------------
Confidence 99999999987 7999999999999999999999999988763100
Q ss_pred HHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCC--CCCCCCccCCCCCcEEE
Q 005406 398 DRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG--DNLSGHVGSPNPACEIK 475 (698)
Q Consensus 398 d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~ 475 (698)
...++|.+++||+++++++.+.+.+ +++++++.||+||+++.++..... ....+++|+|+++++++
T Consensus 272 -----------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 339 (501)
T 3ipl_A 272 -----------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVK 339 (501)
T ss_dssp -----------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEE
T ss_pred -----------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEE
Confidence 0027999999999999999999887 599999999999998755544332 24567899999999999
Q ss_pred EEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCcee
Q 005406 476 LVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY 555 (698)
Q Consensus 476 i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~ 555 (698)
|+|.+ ++..|||+|+|+++++|||++|+.|.+ | .+|||+|||+|++|+||+++|+||+||+||+ +|++
T Consensus 340 i~d~~---------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~ 407 (501)
T 3ipl_A 340 IKNPN---------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIIS-GGEN 407 (501)
T ss_dssp EESCC---------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEEC-SSCE
T ss_pred EecCC---------CCCccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEE-CCEE
Confidence 99943 223799999999999999999999988 6 7899999999999999999999999999996 8999
Q ss_pred ecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHH
Q 005406 556 VAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGK 632 (698)
Q Consensus 556 v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 632 (698)
|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++..+ .+ .++|+++++
T Consensus 408 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~----------~~-----------------~~~l~~~l~ 460 (501)
T 3ipl_A 408 IYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD----------IS-----------------KAQLIAYLS 460 (501)
T ss_dssp ECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSC----------CC-----------------HHHHHHHHH
T ss_pred ECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCC----------CC-----------------HHHHHHHHH
Confidence 99999999999999999999998543 4578888887542 11 345666665
Q ss_pred hCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406 633 EGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKERFAKA 677 (698)
Q Consensus 633 ~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~ 677 (698)
.+|+.|++|+.|++++++| +|++||++|++|++.++++
T Consensus 461 -~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 461 -KHLAKYKVPKHFEKVDTLP------YTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp -HHSCGGGSCSEEEECSSCC-------------------------
T ss_pred -hhCccccCCCEEEEecccC------CCCCCCEeHHHHhhccccc
Confidence 6799999999999999999 9999999999999988764
No 27
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=6.1e-75 Score=711.17 Aligned_cols=526 Identities=20% Similarity=0.250 Sum_probs=432.5
Q ss_pred chHHHhhhHHHhhhccccCCCCCccccCCCCccccccCCCceEEcCCCCCCCcCcccccCCCCccccccCCCCCCCCCHH
Q 005406 3 DSSAQRRFKAVQRHLTSTNTDRCSQLDYNHTTGCFVQSQGYSVRLPEKLQTGKWNVYRSARSPLTLVDRFPDHPEIGTLH 82 (698)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~ 82 (698)
+..|+++|.++|++++++|+.+++++++..+..... +....... ..+. ...+++
T Consensus 414 i~~l~~~~~~lL~~l~~~p~~~~~~~~~l~~~e~~~-------------------~~~~~~~~------~~~~-~~~~l~ 467 (1304)
T 2vsq_A 414 ILRLKSQLLTAIQQLIQNPDQPVSTINLVDDREREF-------------------LLTGLNPP------AQAH-ETKPLT 467 (1304)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSBGGGCCCCCHHHHHH-------------------HHTTTSCC------CCCC-CCCCHH
T ss_pred HHHHHHHHHHHHHHhccCccccccccCCCCHHHHHH-------------------HHHhcCCC------CCCC-CCCCHH
Confidence 457899999999999999999999999876542100 00000000 0011 237899
Q ss_pred HHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcC
Q 005406 83 DNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYS 162 (698)
Q Consensus 83 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G 162 (698)
++|++.++++||++|+.+. + +.+||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|
T Consensus 468 ~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG 538 (1304)
T 2vsq_A 468 YWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAG 538 (1304)
T ss_dssp HHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHC
Confidence 9999999999999999653 2 469999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEeeHHHHHhc
Q 005406 163 YISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLISYLQLQSQ 242 (698)
Q Consensus 163 ~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (698)
+++|||+|.++.+++.++++++++++++++......+ ..++.....+.+++.. .. ..
T Consensus 539 ~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~----~~~~~~~~~~~~~~~~------------------~~-~~ 595 (1304)
T 2vsq_A 539 AAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQA----AELPYTGTTLFIDDQT------------------RF-EE 595 (1304)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTS----TTCCCCSEEEESSCGG------------------GG-GS
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhh----hccCCCCcEEEecccc------------------cc-cc
Confidence 9999999999999999999999999999987643321 1122222333332210 00 00
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhC
Q 005406 243 GCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYG 322 (698)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G 322 (698)
....+.....++++|||+|||||||.||||+++|+++.+. .+....++++++|+++++.|++|+.+...++.+++.|
T Consensus 596 --~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G 672 (1304)
T 2vsq_A 596 --QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNA 672 (1304)
T ss_dssp --CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTT
T ss_pred --ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcC
Confidence 1112233467899999999999999999999999999976 4455668889999999999999999998899999999
Q ss_pred cEEEEeC----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhH
Q 005406 323 VAVGFYQ----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWD 398 (698)
Q Consensus 323 ~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d 398 (698)
+++++.+ .++..+.+.|+++++|+++++|+++..+.+.....
T Consensus 673 ~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~---------------------------------- 718 (1304)
T 2vsq_A 673 ARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDW---------------------------------- 718 (1304)
T ss_dssp CEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH----------------------------------
T ss_pred CEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhc----------------------------------
Confidence 9999987 58899999999999999999999999886521000
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh-CCceecccCcchhcchhcccCCC----CCCCCCccCCCCCcE
Q 005406 399 RLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAIDKG----DNLSGHVGSPNPACE 473 (698)
Q Consensus 399 ~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~----~~~~~~vG~p~~~~~ 473 (698)
+ +++|.+++||+++++++.+.|.+.+ +++++|+||+||++++++..... .....++|+|++|++
T Consensus 719 ---~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~ 787 (1304)
T 2vsq_A 719 ---M--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNAS 787 (1304)
T ss_dssp ---H--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEE
T ss_pred ---C--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCE
Confidence 0 3799999999999999999888777 47899999999999877654332 234568999999999
Q ss_pred EEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhccccc------CCCceecCcEEEEecCCcEEEEccCCCe
Q 005406 474 IKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVID------GDGWLHTGDIGLWLPGGRLKIIDRKKNI 547 (698)
Q Consensus 474 v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~------~~gw~~TGDlg~~~~~G~l~i~GR~~d~ 547 (698)
++|+| ++++.++.|. .|||||+|+++++||||+|+.|+++|. +++||+|||+|++++||.|+|+||+||+
T Consensus 788 ~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~q 863 (1304)
T 2vsq_A 788 VYILN-EQSQLQPFGA---VGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQ 863 (1304)
T ss_dssp EEEEC-TTSCBCCTTC---CEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGE
T ss_pred EEEEC-CCcCCCCCCC---ceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCE
Confidence 99999 5667666665 899999999999999999999999993 3569999999999999999999999999
Q ss_pred EecCCceeecchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHH
Q 005406 548 FKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVL 624 (698)
Q Consensus 548 ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 624 (698)
||+ +|++|+|.|||++|.+||+|.+|+|++.++ +..++|+|++... .+ .
T Consensus 864 vki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~----------~~-----------------~ 915 (1304)
T 2vsq_A 864 VKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQ----------LS-----------------A 915 (1304)
T ss_dssp EEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSS----------SC-----------------H
T ss_pred EEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCC----------CC-----------------H
Confidence 998 899999999999999999999999998543 4689999998652 11 3
Q ss_pred HHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccCcccCCChHHHHHH
Q 005406 625 AEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLTPTFKIKRPQAKER 673 (698)
Q Consensus 625 ~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T~~GKi~R~~l~~~ 673 (698)
++|+++++ .+||.|++|..|++++++| +|++|||+|++|.+.
T Consensus 916 ~~l~~~l~-~~Lp~ymvP~~~~~l~~lP------~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 916 EDVKAHLK-KQLPAYMVPQTFTFLDELP------LTTNGKVNKRLLPKP 957 (1304)
T ss_dssp HHHHHHHH-HHSCGGGSCSEEEEESCCC------CCSSCSSCCSCCCCC
T ss_pred HHHHHHHH-HhChHhhhccEEEEecccC------CCCCcccCHhhcCCc
Confidence 45666664 6799999999999999999 999999999988654
No 28
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=4.3e-73 Score=642.33 Aligned_cols=506 Identities=22% Similarity=0.327 Sum_probs=404.4
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHH
Q 005406 75 HPEIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIV 154 (698)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~ 154 (698)
.+...|+.++|+++++++|+.+++.. ..+..+++||+||+++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 17 ~~~~~tl~~~l~~~a~~~p~~~~~~~------~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 90 (576)
T 3gqw_A 17 YADFPTLVDALDYAALSSAGMNFYDR------RCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEA 90 (576)
T ss_dssp CSCCSSHHHHHHHHTTSSCEEEEECT------TSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHH
T ss_pred cCCCCcHHHHHHHHhhCCCCeEEeCC------CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHH
Confidence 45678999999999999999887732 223347899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCC-------HHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCC
Q 005406 155 DHACSAYSYISVPLYDTLG-------PDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPS 227 (698)
Q Consensus 155 ~lA~~~~G~~~vpl~~~~~-------~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~ 227 (698)
+|||+++|+++||+++.++ .+++.+++++++++++|++.+....+.......+.+..
T Consensus 91 ~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~---------------- 154 (576)
T 3gqw_A 91 FFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHV---------------- 154 (576)
T ss_dssp HHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEE----------------
T ss_pred HHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCccee----------------
Confidence 9999999999999999999 89999999999999999998877766655544433221
Q ss_pred CCCceEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc-cccCCCcEEEEcCCh
Q 005406 228 TSGVKLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM-VQFYPSDIYMSYLPL 306 (698)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~d~~l~~~pl 306 (698)
........ ............++++++|+|||||||.||||+++|+++++.+...... +++.++|++++++|+
T Consensus 155 ------~~~~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 227 (576)
T 3gqw_A 155 ------LSHAWFKA-LPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPF 227 (576)
T ss_dssp ------EEHHHHHT-SCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCT
T ss_pred ------cchhhhhc-ccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCc
Confidence 11111111 1111223344578999999999999999999999999999888776544 788999999999999
Q ss_pred hhHHHHHH-HHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 005406 307 AHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAY 380 (698)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 380 (698)
+|++++.. .+.++..|+++++.+ .++..+++.++++++|+++++|+++..+.+.....
T Consensus 228 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~---------------- 291 (576)
T 3gqw_A 228 YHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEK---------------- 291 (576)
T ss_dssp TSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHH----------------
T ss_pred cccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhccc----------------
Confidence 99999987 566788999998876 48899999999999999999999998776521111
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHh------CCceecccCcchhcchhcc
Q 005406 381 NSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCF------GCQVMEGYGMTETSCIISA 454 (698)
Q Consensus 381 ~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~------g~~l~~~YG~TE~~~~~~~ 454 (698)
.......+++|.+++||+++++++.++|.+.+ ++.+++.||+||++++++.
T Consensus 292 -----------------------~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 348 (576)
T 3gqw_A 292 -----------------------DLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSF 348 (576)
T ss_dssp -----------------------HHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEE
T ss_pred -----------------------ccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeec
Confidence 01111126899999999999999999999887 6889999999999987765
Q ss_pred cCCCCC----------------------------CCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcccc
Q 005406 455 IDKGDN----------------------------LSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQG 506 (698)
Q Consensus 455 ~~~~~~----------------------------~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~G 506 (698)
...... ...++|+|+++++++|+| +++..++.++ .|||+|+|+++++|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~~~~g 424 (576)
T 3gqw_A 349 SDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAERV---VGHICISGPSLMSG 424 (576)
T ss_dssp CCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTTB---CEEEEEESTTSCCC
T ss_pred ccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCCC---eEEEEEeCcccccc
Confidence 432210 112799999999999999 6677776665 89999999999999
Q ss_pred ccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcCC-CCeE
Q 005406 507 YYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDSF-NSCL 585 (698)
Q Consensus 507 Y~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~-~~~~ 585 (698)
||++|+.|.+.+ .+|||+|||+|++ +||.|+|+||+||+||+ +|++|+|.|||++|.+||+|.+++|++... +...
T Consensus 425 Y~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~ 501 (576)
T 3gqw_A 425 YFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKI 501 (576)
T ss_dssp BTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSSCCTTSEEEEECTTSCE
T ss_pred ccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCcccccccEEEEEcCCccE
Confidence 999999988766 7899999999999 79999999999999998 899999999999999999999877766332 3444
Q ss_pred EEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEEec--CCCCCCCCccCccc
Q 005406 586 VAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTLMP--EPFSVENGLLTPTF 663 (698)
Q Consensus 586 va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~--~~p~~~~~~~T~~G 663 (698)
+++++.... ++...+.+.+.+.+.+ .+.|++|..+.+++ ++| +|++|
T Consensus 502 ~~~~~~~~~---------------------~~~~~~~l~~~l~~~l----~~~~~~p~~i~~v~~~~lP------~t~~G 550 (576)
T 3gqw_A 502 ILQIQCRIS---------------------DEERRGQLIHALAARI----QSEFGVTAAIDLLPPHSIP------RTSSG 550 (576)
T ss_dssp EEEEECCCC---------------------CHHHHHHHHHHHHHHH----HHHHSCCEEEEEECSSCSC------BCTTS
T ss_pred EEEEEEecC---------------------chhHHHHHHHHHHHHH----HHHhCCceeEEEECCCCcC------cCCCc
Confidence 555544321 1111223333333322 15678888998887 899 99999
Q ss_pred CCChHHHHHHHHHHHHHHHhccc
Q 005406 664 KIKRPQAKERFAKAISNMYAELA 686 (698)
Q Consensus 664 Ki~R~~l~~~~~~~i~~ly~~~~ 686 (698)
|++|++|++.|++.+.+.|...+
T Consensus 551 Ki~r~~l~~~~~~~~~~~~~~~~ 573 (576)
T 3gqw_A 551 KPARAEAKKRYQKAYAASLNVQE 573 (576)
T ss_dssp SBCHHHHHHHHHHHHTCC-----
T ss_pred cchHHHHHHHHHHHhhhccchhh
Confidence 99999999999999887776544
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=3.9e-74 Score=647.85 Aligned_cols=515 Identities=15% Similarity=0.153 Sum_probs=315.6
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEee-cCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHH
Q 005406 77 EIGTLHDNFIYAVENYPDYKYLGTRVR-VDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVD 155 (698)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~-~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~ 155 (698)
...|+.++|+++++++||++|+.+... .+......+.+||+||+++++++|++|.+.|+ +||+|+|+++|+++|++++
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~ 96 (562)
T 3ite_A 18 STVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAII 96 (562)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHH
T ss_pred ccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHH
Confidence 457899999999999999999987510 01111234789999999999999999999999 7999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCCCCCCCCCCCCCCCceEee
Q 005406 156 HACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGGKDEHLPSLPSTSGVKLIS 235 (698)
Q Consensus 156 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (698)
|||+++|+++||+++.++.+++.+++++++++++|++......+ ..+....++.... ..
T Consensus 97 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~----------------~~ 155 (562)
T 3ite_A 97 VGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTKN----------------QS 155 (562)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETTC----------------HH
T ss_pred HHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecccc----------------hh
Confidence 99999999999999999999999999999999999986543221 1111111111100 12
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc--------cccCCCcEEEEcCChh
Q 005406 236 YLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM--------VQFYPSDIYMSYLPLA 307 (698)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--------~~~~~~d~~l~~~pl~ 307 (698)
+.+....... ........++++++|+|||||||.||||++||+++.+.+..+... +.+...+++++..|++
T Consensus 156 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (562)
T 3ite_A 156 FIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRA 234 (562)
T ss_dssp HHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTT
T ss_pred hhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCch
Confidence 2333222211 122234567899999999999999999999999998877654332 4577889999999999
Q ss_pred hHHHHHHHHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 005406 308 HIYERANQIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQ 385 (698)
Q Consensus 308 h~~~~~~~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~ 385 (698)
|.+++...+.++..|+++++.+ ..+..+.+.++++++|++.++|+++..+...
T Consensus 235 ~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~------------------------- 289 (562)
T 3ite_A 235 FDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV------------------------- 289 (562)
T ss_dssp STHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC-------------------------
T ss_pred hhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC-------------------------
Confidence 9999888889999999999876 2457788999999999999999987654220
Q ss_pred HHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCC-CCCCCCC
Q 005406 386 AIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDK-GDNLSGH 464 (698)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~-~~~~~~~ 464 (698)
....+++|.+++||+++++++.++|.+.+++++++.||+||+++.++.... .....++
T Consensus 290 ---------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 348 (562)
T 3ite_A 290 ---------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRC 348 (562)
T ss_dssp ---------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTTE
T ss_pred ---------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCcc
Confidence 001158999999999999999999998889999999999999877665443 2355678
Q ss_pred ccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCC--ceecCcEEEEecCCcEEEEc
Q 005406 465 VGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDG--WLHTGDIGLWLPGGRLKIID 542 (698)
Q Consensus 465 vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~g--w~~TGDlg~~~~~G~l~i~G 542 (698)
+|+|+++++++|+|++++..++.++ .|||+|+|+++++|||++|+.|+..+ .+| ||+|||+|++|+||+|+|+|
T Consensus 349 ~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l~~~G 424 (562)
T 3ite_A 349 IGHPLGDSVAHVLAPGSNEHVKKGM---AGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSILFLG 424 (562)
T ss_dssp EEEECTTCEEEEECTTSSCBCCTTS---CEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCEEEEE
T ss_pred ccccCCCCeEEEEeCCCCCCCCCCC---ceEEEEeccccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeEEEEc
Confidence 9999999999999976666666665 89999999999999999999998776 344 99999999999999999999
Q ss_pred cCCCeEecCCceeecchHHHHHHhcC-cCceeEEEEEcCC---CC-eEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCH
Q 005406 543 RKKNIFKLAQGEYVAPEKIENVYAKC-KFVLQCFIYGDSF---NS-CLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDP 617 (698)
Q Consensus 543 R~~d~ikls~G~~v~p~eIE~~l~~~-p~V~~~~V~g~~~---~~-~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (698)
|+||+||+ +|++|+|.|||++|.++ |.+.+++|++.++ ++ .+++++......... .... -.
T Consensus 425 R~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~~~---~~ 490 (562)
T 3ite_A 425 RKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRG----------ELRW---IN 490 (562)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred cccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccc----------cccc---cc
Confidence 99999997 89999999999999998 7888888887543 23 344454443322110 0000 00
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcceeeEEEEecCCCCCCCCccC-cccCCChHHHHHHHHHHH-HHHHhcc
Q 005406 618 RARAAVLAEMNAVGKEGQLRGFEYAKAVTLMPEPFSVENGLLT-PTFKIKRPQAKERFAKAI-SNMYAEL 685 (698)
Q Consensus 618 ~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~~~p~~~~~~~T-~~GKi~R~~l~~~~~~~i-~~ly~~~ 685 (698)
+-.+.+.++|+++++ .+|+.|++|+.|++++++| +| ++||++|++|++.|++.- .+++...
T Consensus 491 ~~~~~~~~~l~~~~~-~~L~~y~~P~~i~~v~~lP------~t~~~GKi~r~~L~~~~~~~~~~~~~~~~ 553 (562)
T 3ite_A 491 ENYKEINNSLRQACE-QTLPAYMVPDFIIPISFIP------LRDTSAKTDAKALEHMFHTLSLGELFGES 553 (562)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cchhhHHHHHHHHHH-hhCCcccCCcEEEEeccCC------CCCCCCcchHHHHHHHHhccCHHHHhccC
Confidence 111234567888886 7899999999999999999 88 999999999999997543 3444443
No 30
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=4.3e-73 Score=643.83 Aligned_cols=500 Identities=21% Similarity=0.265 Sum_probs=395.5
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406 77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH 156 (698)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l 156 (698)
...|+.++|+++++++||++|+.+. ++ ++.+++||+||.++++++|++|+++|+++||+|+|+++|+++|++++|
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 83 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFL 83 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHH
Confidence 4679999999999999999999875 31 235789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCC---CHHHHHHHHhhccceEEEecccchHHHHhhh-hcCCceeEEEEeCCCCCCCCCCCCCCCce
Q 005406 157 ACSAYSYISVPLYDTL---GPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI-SEIPSVHLIVVVGGKDEHLPSLPSTSGVK 232 (698)
Q Consensus 157 A~~~~G~~~vpl~~~~---~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 232 (698)
||+++|+++||+++.+ +.+++.++++++++++++++.+....+.... ...+....+.
T Consensus 84 A~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~------------------- 144 (590)
T 3kxw_A 84 GCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIP------------------- 144 (590)
T ss_dssp HHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEE-------------------
T ss_pred HHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccc-------------------
Confidence 9999999999999998 4578999999999999999987655543322 1222211111
Q ss_pred EeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHH
Q 005406 233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYER 312 (698)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 312 (698)
....+++.... ..........++++++|+|||||||.||||++||+++++.+......++++++|++++++|++|++++
T Consensus 145 ~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~ 223 (590)
T 3kxw_A 145 AIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGL 223 (590)
T ss_dssp EEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH
T ss_pred eeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhh
Confidence 11122111111 11122345678999999999999999999999999999999988888999999999999999999999
Q ss_pred HH-HHHHHHhCcEEEEeC-C----ChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 005406 313 AN-QIVSVYYGVAVGFYQ-G----DNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQA 386 (698)
Q Consensus 313 ~~-~~~~l~~G~~~~~~~-~----~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~ 386 (698)
.. .+.+++.|+++++.+ + ++..+++.|+++++|++.++|.++..+.+.+.....
T Consensus 224 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~-------------------- 283 (590)
T 3kxw_A 224 IGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKK-------------------- 283 (590)
T ss_dssp HTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGG--------------------
T ss_pred HHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhc--------------------
Confidence 87 788999999999987 2 899999999999999999999999888763211100
Q ss_pred HHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC------CceecccCcchhcchhcccCCC--
Q 005406 387 IVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG------CQVMEGYGMTETSCIISAIDKG-- 458 (698)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g------~~l~~~YG~TE~~~~~~~~~~~-- 458 (698)
.....+++|.+++||+++++++.+.|.+.++ +++++.||+||++++++.....
T Consensus 284 -------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~ 344 (590)
T 3kxw_A 284 -------------------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSS 344 (590)
T ss_dssp -------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSC
T ss_pred -------------------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCC
Confidence 0011158999999999999999999998873 4799999999999876654321
Q ss_pred -------------------------CCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhh
Q 005406 459 -------------------------DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQ 513 (698)
Q Consensus 459 -------------------------~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~ 513 (698)
....+++|+|+++ ++|+|.+++..++.++ .|||+|+||+++.|||++|+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~ 419 (590)
T 3kxw_A 345 YKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ---VGEIWVQSNSVAKGYWNQPEE 419 (590)
T ss_dssp CCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB---CEEEEEESTTSCCCBTTCHHH
T ss_pred ceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC---EEEEEEeCCcccccccCChhH
Confidence 1234678999998 8889966677666665 899999999999999999999
Q ss_pred hcccccC------CC--ceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHH-hcCcCce--eEEEEEc--C
Q 005406 514 TREVIDG------DG--WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVY-AKCKFVL--QCFIYGD--S 580 (698)
Q Consensus 514 t~~~f~~------~g--w~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l-~~~p~V~--~~~V~g~--~ 580 (698)
|++.|.. +| ||+|||+|++| ||.|+|+||+||+||+ +|++|+|.|||++| ..+|.|. +|+|++. .
T Consensus 420 t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~ 497 (590)
T 3kxw_A 420 TRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEE 497 (590)
T ss_dssp HHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEET
T ss_pred HHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEEEEEecCC
Confidence 9999953 24 99999999999 9999999999999998 89999999999999 8899998 7888874 3
Q ss_pred CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceee-EEEEe--cCCCCCCCC
Q 005406 581 FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAK-AVTLM--PEPFSVENG 657 (698)
Q Consensus 581 ~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~-~i~~~--~~~p~~~~~ 657 (698)
.++.+++++++.+... +..-.+.+.+.+++.+.. .|++|. .++++ +++|
T Consensus 498 ~~~~~~~~v~~~~~~~-------------------~~~~~~~l~~~l~~~l~~----~~~~p~~~i~~v~~~~lP----- 549 (590)
T 3kxw_A 498 HEYKLTVMCEVKNRFM-------------------DDVAQDNLFNEIFELVYE----NHQLEVHTIVLIPLKAMP----- 549 (590)
T ss_dssp TEEEEEEEEEESCTTC-------------------CHHHHHHHHHHHHHHHHH----HHSCCCCEEEEEETTCSC-----
T ss_pred CCceEEEEEEeccccc-------------------cchhHHHHHHHHHHHHHH----HcCCceeEEEEECCCccC-----
Confidence 3567888888765310 011112333344333321 244443 44554 7999
Q ss_pred ccCcccCCChHHHHHHHHH
Q 005406 658 LLTPTFKIKRPQAKERFAK 676 (698)
Q Consensus 658 ~~T~~GKi~R~~l~~~~~~ 676 (698)
+|++|||+|++|++.|.+
T Consensus 550 -~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 550 -HTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp -CCSCHHHHHHHHHHHHHH
T ss_pred -cCCCcHHHHHHHHHHHHc
Confidence 999999999999999875
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.4e-61 Score=533.57 Aligned_cols=400 Identities=19% Similarity=0.205 Sum_probs=317.6
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHH
Q 005406 77 EIGTLHDNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDH 156 (698)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~l 156 (698)
...|+.++|+++++++||++|+.+....++..+..+++||+||.++++++|++|++.|+ +||+|+|+++|+++|++++|
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 35789999999999999999998862111223345789999999999999999999996 99999999999999999999
Q ss_pred HHHhcCCeEEecCC---CCCHHHHHHHHhhccceEEEecccchHHHHhhhhcCCce--eEEEEeCCCCCCCCCCCCCCCc
Q 005406 157 ACSAYSYISVPLYD---TLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSV--HLIVVVGGKDEHLPSLPSTSGV 231 (698)
Q Consensus 157 A~~~~G~~~vpl~~---~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~ii~~~~~~~~~~~~~~~~~~ 231 (698)
||+++|+++|||++ .++.+++.+++++++++++|++......+.+.....+.. ..++.++...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 888999999999999999999998877766654433321 1233322211
Q ss_pred eEeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCC------CcEEEEcCC
Q 005406 232 KLISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYP------SDIYMSYLP 305 (698)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~------~d~~l~~~p 305 (698)
. ............++++++|+|||||||.||||++||+++++.+......+.+.. +|++++++|
T Consensus 169 ---------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 238 (480)
T 3t5a_A 169 ---------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLP 238 (480)
T ss_dssp ---------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCC
T ss_pred ---------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCC
Confidence 0 001112233457899999999999999999999999999998887777777776 999999999
Q ss_pred hhhHHHHHH-HHHHHHhCcEEEEeC-----CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 005406 306 LAHIYERAN-QIVSVYYGVAVGFYQ-----GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAA 379 (698)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 379 (698)
++|++++.. ++.+++.|+++++.+ .++..+++.++++++| +.++|+++..+........
T Consensus 239 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~-------------- 303 (480)
T 3t5a_A 239 FYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDD-------------- 303 (480)
T ss_dssp TTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTG--------------
T ss_pred CcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcc--------------
Confidence 999999875 678999999999986 3899999999999999 8899999887765311000
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhC------CceecccCcchhcchhc
Q 005406 380 YNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFG------CQVMEGYGMTETSCIIS 453 (698)
Q Consensus 380 ~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g------~~l~~~YG~TE~~~~~~ 453 (698)
.......++||.+++||+++++++.++|.+.++ +.+++.||+||++++++
T Consensus 304 ------------------------~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 359 (480)
T 3t5a_A 304 ------------------------DMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVA 359 (480)
T ss_dssp ------------------------GGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEE
T ss_pred ------------------------cccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEe
Confidence 000111268999999999999999999998874 47999999999998776
Q ss_pred ccCCCC-------------------------CCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCcccccc
Q 005406 454 AIDKGD-------------------------NLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYY 508 (698)
Q Consensus 454 ~~~~~~-------------------------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~ 508 (698)
...... ...+++|+|++ ++++|+|.+++..++.++ .|||||+||++++|||
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~---~GEl~v~g~~v~~GY~ 435 (480)
T 3t5a_A 360 TSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT---VGEIWVHGDNVANGYW 435 (480)
T ss_dssp ECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB---CEEEEEESTTSCCCBT
T ss_pred ecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC---EEEEEEeCCccccccc
Confidence 654332 23358999999 999999966667776665 8999999999999999
Q ss_pred CChhhhccccc-----------CCCceecCcEEEEecCCcEEEEcc
Q 005406 509 KNEVQTREVID-----------GDGWLHTGDIGLWLPGGRLKIIDR 543 (698)
Q Consensus 509 ~~~~~t~~~f~-----------~~gw~~TGDlg~~~~~G~l~i~GR 543 (698)
++|+.|+++|+ .+|||+|||+|++| ||+|+|+||
T Consensus 436 ~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 436 QKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999995 57899999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=5.7e-55 Score=461.30 Aligned_cols=313 Identities=16% Similarity=0.156 Sum_probs=265.8
Q ss_pred CCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccccccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeCCChhh
Q 005406 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLMVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQGDNLK 334 (698)
Q Consensus 255 ~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~ 334 (698)
.|+++||+|||||||.||||++||+++.+.+......++++++|++++++|++|++++...+.+++.|+++++.+.. ..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~-~~ 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT-AN 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC-SC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc-cc
Confidence 47899999999999999999999999999998888889999999999999999999999989999999999887632 23
Q ss_pred HHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHcCCcEE
Q 005406 335 LMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKIRERLGGRVR 414 (698)
Q Consensus 335 l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr 414 (698)
.++.++++++|++.++|+++..+++..... . ..+++|
T Consensus 115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~--------------------------------~-----------~l~~lr 151 (358)
T 4gs5_A 115 PLAGLDHADFDFVAMVPMQLQSILENSATS--------------------------------G-----------QVDRLG 151 (358)
T ss_dssp TTTTCSSCCCSEEEECHHHHHHHHHCTTTG--------------------------------G-----------GGGGGC
T ss_pred HHHHHHHhCCeEEEcChHHHHHhhcccccc--------------------------------c-----------cCCcce
Confidence 466788999999999999999887621100 0 015899
Q ss_pred EEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecCCCCCCCCCCCCCcc
Q 005406 415 FMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRG 494 (698)
Q Consensus 415 ~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~G 494 (698)
.+++||+++++++.+++++ +++++++.||+||+++.++.........+.+|.+.|++++.+.+ .|
T Consensus 152 ~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~--------------~G 216 (358)
T 4gs5_A 152 KVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE--------------RG 216 (358)
T ss_dssp SEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT--------------TS
T ss_pred EEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeeccCCCeEEEecC--------------cC
Confidence 9999999999999999987 59999999999999988887777777788999999999988754 69
Q ss_pred EEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCCcEEEEccCCCeEecCCceeecchHHHHHH---hcCcCc
Q 005406 495 EICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVY---AKCKFV 571 (698)
Q Consensus 495 El~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G~l~i~GR~~d~ikls~G~~v~p~eIE~~l---~~~p~V 571 (698)
||+++|+. ..+|||+|||+|++|++| ++|+||+||+||+ +|+||+|.|||++| .+||.|
T Consensus 217 el~~~g~~----------------~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V 278 (358)
T 4gs5_A 217 CLHISGAV----------------TNGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNI 278 (358)
T ss_dssp EEEEESGG----------------GTTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTC
T ss_pred ceEEeccc----------------ccCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCc
Confidence 99999863 258999999999999988 6778999999997 89999999999887 468999
Q ss_pred eeEEEEE-cC---CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhCCCCCcceeeEEEE
Q 005406 572 LQCFIYG-DS---FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKEGQLRGFEYAKAVTL 647 (698)
Q Consensus 572 ~~~~V~g-~~---~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~L~~~~~p~~i~~ 647 (698)
.+|+|++ .+ .++.++|+|++.... ...++|+++++ .+|+.|++|+.|++
T Consensus 279 ~~a~vv~~~~d~~~ge~~~a~v~~~~~~--------------------------~~~~~l~~~l~-~~L~~~~~P~~i~~ 331 (358)
T 4gs5_A 279 GNAFFCWWEPDAKLGQKLVLVIENAMPE--------------------------ALTERLTAEIR-SRVSTYENPKHIYF 331 (358)
T ss_dssp CCCEEEEEEEETTTEEEEEEEEESCCCH--------------------------HHHHHHHHHHH-HHSCGGGSCSCEEE
T ss_pred cEEEEEEecCCccCCEEEEEEEECCCCC--------------------------cCHHHHHHHHH-hhCCCCCCceEEEE
Confidence 9998864 33 246788888876532 22456677775 67999999999999
Q ss_pred ecCCCCCCCCccCcccCCChHHHHHHHHHH
Q 005406 648 MPEPFSVENGLLTPTFKIKRPQAKERFAKA 677 (698)
Q Consensus 648 ~~~~p~~~~~~~T~~GKi~R~~l~~~~~~~ 677 (698)
++++| +|++|||+|++|+++|++.
T Consensus 332 v~~lP------~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 332 AKAFA------KTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp ESSCC------BCTTSCBCHHHHHHHTC--
T ss_pred ECCcC------CCCCCChhHHHHHHHhhhh
Confidence 99999 9999999999999988654
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=5.7e-48 Score=421.51 Aligned_cols=349 Identities=17% Similarity=0.161 Sum_probs=266.7
Q ss_pred EeeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccc---ccccCCCcEEEEcCCh-hh
Q 005406 233 LISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL---MVQFYPSDIYMSYLPL-AH 308 (698)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl-~h 308 (698)
+.+.+++.+.. +.......++++++|+|||||||.||||++||+++......... .+++.++|++++.+|+ +|
T Consensus 72 ~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 148 (443)
T 2y4o_A 72 FSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLF 148 (443)
T ss_dssp CBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSS
T ss_pred CCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCccc
Confidence 34566665432 12223457799999999999999999999999998776544332 4778999999999999 57
Q ss_pred HHHHHHHHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Q 005406 309 IYERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAI 387 (698)
Q Consensus 309 ~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~ 387 (698)
..++...+.++..|+++++.+ +++..+++.|++++||+++++|+++..|.+.....-.
T Consensus 149 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~--------------------- 207 (443)
T 2y4o_A 149 TGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGM--------------------- 207 (443)
T ss_dssp HHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC---------------------
T ss_pred ccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCC---------------------
Confidence 777777888899999998876 6999999999999999999999999988874321100
Q ss_pred HcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcch-hcccCCCCCCCCCcc
Q 005406 388 VSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCI-ISAIDKGDNLSGHVG 466 (698)
Q Consensus 388 ~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~-~~~~~~~~~~~~~vG 466 (698)
.. ..+++|.+++||+++++++.+++.+.+|+++++.||+||+++. +...... ...+ ++
T Consensus 208 ----~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~-~~~g-~~ 266 (443)
T 2y4o_A 208 ----DP---------------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVE-TKDG-PV 266 (443)
T ss_dssp ----CG---------------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTT-TCCS-EE
T ss_pred ----Cc---------------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCC-CCCc-eE
Confidence 00 0158999999999999999999999899999999999998443 3322221 1112 56
Q ss_pred CCCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecC-CcE-----EE
Q 005406 467 SPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG-GRL-----KI 540 (698)
Q Consensus 467 ~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~-G~l-----~i 540 (698)
.|.++++++|+|++++..++.++ .|||+|+|. |++.| .++||+|||+|+++++ |++ +|
T Consensus 267 ~~~~~~~~~i~d~~~g~~~~~G~---~Gel~v~~~------------t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i 330 (443)
T 2y4o_A 267 IWEDHFYPEIIDPVTGEVLPDGS---QGELVFTSL------------TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKI 330 (443)
T ss_dssp ECTTTEEEEEECTTTCCBCCTTC---CEEEEEEES------------SCSSS-CCSSEEEEEEECEECCSSSSSCEECCC
T ss_pred EccCCeEEEEEcCCCCCCCCCCC---ceEEEEeCC------------CcccC-hhheeecCCEEEEcCCCCCCccccCcc
Confidence 67789999999976677777665 899999982 34556 6899999999999999 987 89
Q ss_pred EccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcC---CCCeEEEEEEcCh--hHHHHHHHHcCCCcccHHHhhC
Q 005406 541 IDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS---FNSCLVAIVAVDP--DVLKDWAASQGIKFEDLEQLCN 615 (698)
Q Consensus 541 ~GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~--~~~~~~~~~~~~~~~~~~~~~~ 615 (698)
+||.||+||+ +|++|+|.+||++|.+||+|.+++|++.+ ..+.++|+|++.+ +. . .
T Consensus 331 ~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~----------~--------~ 391 (443)
T 2y4o_A 331 TGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAA----------S--------V 391 (443)
T ss_dssp CEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHT----------T--------C
T ss_pred ccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccc----------c--------c
Confidence 9999999997 89999999999999999999999888732 3578899999876 21 0 0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCCc-ceeeEEEEe--cCCCCCCCCccCcccCCChHHHHH
Q 005406 616 DPRARAAVLAEMNAVGKEGQLRGF-EYAKAVTLM--PEPFSVENGLLTPTFKIKRPQAKE 672 (698)
Q Consensus 616 ~~~~~~~i~~~l~~~~~~~~L~~~-~~p~~i~~~--~~~p~~~~~~~T~~GKi~R~~l~~ 672 (698)
.....+.+.+.++ ..|+.| ++|..|.++ +++| +|++||++|...++
T Consensus 392 ~~~~~~~l~~~l~-----~~l~~~~~~p~~v~~v~~~~lP------~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 392 TDGERAALARELQ-----HRIKTMVGVSSGVTVLAAGGIP------ATATGKARRVIDRR 440 (443)
T ss_dssp CHHHHHHHHHHHH-----HHHHHHTCCCCEEEEECTTCSC------CCTTSCCCSEEECC
T ss_pred hhhHHHHHHHHHH-----HHHHHHhCCceEEEEeCCCccc------CccCCcceEEEecc
Confidence 0001112233333 234444 467788887 4899 99999999975443
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=2.5e-47 Score=415.48 Aligned_cols=329 Identities=16% Similarity=0.151 Sum_probs=253.3
Q ss_pred CCCC-CCeEEEEecCCCCCCcceeeechHHHHHHHHhcc---cccccCCCcEEEEcCChhhHHHHHH-HHHHHHhCcEEE
Q 005406 252 PPKP-EDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS---LMVQFYPSDIYMSYLPLAHIYERAN-QIVSVYYGVAVG 326 (698)
Q Consensus 252 ~~~~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~ 326 (698)
...+ +++++|+|||||||.||||++||+++.+.+.... ..+++.++|++++++|+.|..+... .+.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 4456 8999999999999999999999999977665543 2357899999999999977666554 677899999999
Q ss_pred EeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 005406 327 FYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIVSGQTPSKMWDRLVFNKI 405 (698)
Q Consensus 327 ~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~d~~~~~~~ 405 (698)
+.+ +++..+++.|++++||+++++|+++..|.+.....-.. .
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-------------------------~------------ 203 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID-------------------------P------------ 203 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC-------------------------T------------
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC-------------------------c------------
Confidence 876 79999999999999999999999999998753321100 0
Q ss_pred HHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcchhcccCCCCCCCCCccCCCCCcEEEEEecCCCCCC
Q 005406 406 RERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYT 485 (698)
Q Consensus 406 ~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~ 485 (698)
..+++|.+++||+++++++.+++.+.+|+++++.||+||+++.++..... ....+|.|.++++++|+|++++..+
T Consensus 204 ---~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~g~~~~~~~~~v~i~d~~~g~~~ 278 (436)
T 3qov_A 204 ---RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ--EQNGMHFWEDCYLVEIIDPETGEPV 278 (436)
T ss_dssp ---TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT--TCSSEEECTTTEEEEEECTTTCSBC
T ss_pred ---ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC--CCCeeEEccCceEEEEEECCCCCCC
Confidence 01589999999999999999999999999999999999996542222221 1223677888999999997778877
Q ss_pred CCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecCC------c---EEEEccCCCeEecCCceee
Q 005406 486 SEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGG------R---LKIIDRKKNIFKLAQGEYV 556 (698)
Q Consensus 486 ~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~G------~---l~i~GR~~d~ikls~G~~v 556 (698)
+.++ .|||+|+|. |.+.| .++||+|||+|+++++| + ++|+||.||+||+ +|++|
T Consensus 279 ~~g~---~Gel~v~~~------------~~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-~G~~v 341 (436)
T 3qov_A 279 PEGE---IGELVLTTL------------DREMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-KGVNI 341 (436)
T ss_dssp STTC---CEEEEEEES------------SCCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-TTEEE
T ss_pred CCCC---ceEEEEecc------------CcCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-CCEEE
Confidence 7765 899999983 34455 78999999999999998 5 6999999999998 89999
Q ss_pred cchHHHHHHhcCcCceeEEEEEcCC---CCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHh
Q 005406 557 APEKIENVYAKCKFVLQCFIYGDSF---NSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPRARAAVLAEMNAVGKE 633 (698)
Q Consensus 557 ~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 633 (698)
+|.+||++|.+||+|.+++|++..+ ++.++|+|+++ +.. . .+..-.+.+.+.+++.+
T Consensus 342 ~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~--------~---------~~~~~~~~l~~~l~~~l-- 401 (436)
T 3qov_A 342 FPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLS--------T---------DNYIELEKIRRDIIRQL-- 401 (436)
T ss_dssp CHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTC--------C---------CCHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccc--------c---------cchhhHHHHHHHHHHHH--
Confidence 9999999999999999999988543 57899999988 320 0 01111122333333333
Q ss_pred CCCCCc-ceeeEEEEec--CCCCCCCCccCcccCCChHH
Q 005406 634 GQLRGF-EYAKAVTLMP--EPFSVENGLLTPTFKIKRPQ 669 (698)
Q Consensus 634 ~~L~~~-~~p~~i~~~~--~~p~~~~~~~T~~GKi~R~~ 669 (698)
+.+ ++|..|.+++ ++| +|+ ||++|..
T Consensus 402 ---~~~~~~p~~i~~v~~~~lP------~t~-GKi~R~~ 430 (436)
T 3qov_A 402 ---KDEILVTPKVKLVKKGSLP------QSE-GKAVRVK 430 (436)
T ss_dssp ---HHHHSSCCEEEEECTTCCC--------------CEE
T ss_pred ---HHhcCCceEEEEeCCCccc------CcC-CcceEEE
Confidence 333 5677899998 999 999 9999853
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=3e-47 Score=415.07 Aligned_cols=344 Identities=17% Similarity=0.131 Sum_probs=265.2
Q ss_pred eeHHHHHhcCCCCCCCCCCCCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcc---cccccCCCcEEEEcCCh-hhH
Q 005406 234 ISYLQLQSQGCSSPQPFCPPKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFS---LMVQFYPSDIYMSYLPL-AHI 309 (698)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~pl-~h~ 309 (698)
.+.+++.... +.......++++++|+|||||||.||||++||+++...+.... ..++++++|++++.+|+ +|.
T Consensus 71 ~~~~~l~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 147 (437)
T 2y27_A 71 TTKGDLRDSY---PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFT 147 (437)
T ss_dssp BCHHHHHHTT---TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSH
T ss_pred CCHHHHHhcC---CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccc
Confidence 4556665433 1123345779999999999999999999999999877654433 24778899999999998 788
Q ss_pred HHHHHHHHHHHhCcEEEEeC-CChhhHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 005406 310 YERANQIVSVYYGVAVGFYQ-GDNLKLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQAIV 388 (698)
Q Consensus 310 ~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~~ 388 (698)
.++...+.++..|+++++.+ +++..+++.|++++||+++++|+++..|.+.....-.
T Consensus 148 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~---------------------- 205 (437)
T 2y27_A 148 GGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGL---------------------- 205 (437)
T ss_dssp HHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC----------------------
T ss_pred cchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCC----------------------
Confidence 88877888999999998776 6999999999999999999999999998874322100
Q ss_pred cCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHhCCceecccCcchhcch-hcccCCCCCCCCCccC
Q 005406 389 SGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCI-ISAIDKGDNLSGHVGS 467 (698)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~-~~~~~~~~~~~~~vG~ 467 (698)
.. ..+++|.+++||+++++++.+++.+.+|+++++.||+||+++. ++..... . ...+|.
T Consensus 206 ---~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~-~-~~g~~~ 265 (437)
T 2y27_A 206 ---DP---------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVE-T-KDGPTI 265 (437)
T ss_dssp ---CG---------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTT-T-CSSCEE
T ss_pred ---Cc---------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCC-C-CCceeE
Confidence 00 0158999999999999999999998889999999999998433 3322221 1 112566
Q ss_pred CCCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEec-CCcE-----EEE
Q 005406 468 PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP-GGRL-----KII 541 (698)
Q Consensus 468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~-~G~l-----~i~ 541 (698)
|.++++++|+|++++..++.++ .|||+|+|. |++.| .++||+|||+|++++ +|++ +|+
T Consensus 266 ~~~~~~~~i~d~~~g~~~~~g~---~Gel~v~~~------------t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~ 329 (437)
T 2y27_A 266 WEDHFYPEIIDPETGEVLPDGE---LGELVFTSL------------TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKIT 329 (437)
T ss_dssp CTTTEEEEEECTTTCCBCCTTC---CEEEEEEES------------SCSSS-CCCSEEEEEEECEECCSSSSSCEECCCC
T ss_pred ccCceEEEEEcCCCCCCCCCCC---ccEEEEecC------------CcCCc-hhheeecCCEEEEeCCCCCCccccCccc
Confidence 7789999999976677777665 899999982 44556 689999999999999 6985 999
Q ss_pred ccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEc---CCCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHH
Q 005406 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGD---SFNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPR 618 (698)
Q Consensus 542 GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~---~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (698)
||.||+||+ +|++|+|.+||++|.+||+|.+++|++. ..++.++|+|+++++.. .+..
T Consensus 330 GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~------------------~~~~ 390 (437)
T 2y27_A 330 GRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA------------------PDTA 390 (437)
T ss_dssp EEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT------------------TCHH
T ss_pred cccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc------------------chhh
Confidence 999999997 8999999999999999999999888773 23578999999876420 0000
Q ss_pred HHHHHHHHHHHHHHhCCCCCc-ceeeEEEEe--cCCCCCCCCccCcccCCChHH
Q 005406 619 ARAAVLAEMNAVGKEGQLRGF-EYAKAVTLM--PEPFSVENGLLTPTFKIKRPQ 669 (698)
Q Consensus 619 ~~~~i~~~l~~~~~~~~L~~~-~~p~~i~~~--~~~p~~~~~~~T~~GKi~R~~ 669 (698)
- .+++++.++ ..|+.| ++|..|.++ +++| +|+ ||++|..
T Consensus 391 ~----~~~l~~~l~-~~l~~~~~~p~~v~~v~~~~lP------~t~-GKi~r~~ 432 (437)
T 2y27_A 391 A----IQVAKQALA-YDIKSLIGVTAVINVLPVNGIE------RSV-GKARRVV 432 (437)
T ss_dssp H----HHHHHHHHH-HHHHHHHCCCEEEEECCTTCSC------CCS-SSCCCEE
T ss_pred h----HHHHHHHHH-HHHHHhcCCceEEEEeCCCCcc------CCC-CcceEEE
Confidence 0 122333332 344555 477788888 5899 999 9999964
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=2.9e-30 Score=274.39 Aligned_cols=238 Identities=16% Similarity=0.182 Sum_probs=175.6
Q ss_pred CCCCCeEEEEecCCCCCCcceeeechHHHHHHHHhc---ccccccCCCcEEEEcCCh-hhHHHHHHHHHHHHhCcEEEEe
Q 005406 253 PKPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGF---SLMVQFYPSDIYMSYLPL-AHIYERANQIVSVYYGVAVGFY 328 (698)
Q Consensus 253 ~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~pl-~h~~~~~~~~~~l~~G~~~~~~ 328 (698)
..++++++|+|||||||.||||+++|+++.+.+.+. ....++.++|++++++|+ +|.+++...+.++..|+.++..
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 477899999999999999999999999999888743 345678899999999999 9999999888889999944444
Q ss_pred CCChh-----------------------hHHHHHhhhcCcEEeechHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 005406 329 QGDNL-----------------------KLMDDLAVLKPTIFPSVPRLYNRIYAGITNAVKASGTLREKLFTAAYNSKKQ 385 (698)
Q Consensus 329 ~~~~~-----------------------~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~k~~ 385 (698)
.+++. .+++.|+++++|++.++|+++..|++.....
T Consensus 168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~--------------------- 226 (369)
T 3hgu_A 168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV--------------------- 226 (369)
T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH---------------------
T ss_pred cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh---------------------
Confidence 46777 7888999999999999999999987631100
Q ss_pred HHHcCCCCchhhHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHH-HHh-CCceecccCcchhcchhcccCCCCCCCC
Q 005406 386 AIVSGQTPSKMWDRLVFNKIRERLGGRVRFMGSGASPLSPDVMDFLK-VCF-GCQVMEGYGMTETSCIISAIDKGDNLSG 463 (698)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~-~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~ 463 (698)
....+++|.+++||+++++++.+++. +.+ ++++++.||+||+++++..+.. .
T Consensus 227 ---------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~ 280 (369)
T 3hgu_A 227 ---------------------LQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----T 280 (369)
T ss_dssp ---------------------HHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----C
T ss_pred ---------------------ccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----c
Confidence 00003799999999999999999999 888 8999999999999876543221 1
Q ss_pred CccCC------CCCcEEEEEecCCCCCCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecC--
Q 005406 464 HVGSP------NPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG-- 535 (698)
Q Consensus 464 ~vG~p------~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~-- 535 (698)
++|.| +++++++|+|++++..++.|+ .|||+|++.. ++.+ --+|+|||++.+.+.
T Consensus 281 ~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~---~GEl~vt~l~------------~~~~--l~ry~tgD~~~~~~~~~ 343 (369)
T 3hgu_A 281 SESQQVIYDSFSPFITYDVVDSITAQTVEYGE---RGNVIVTHLS------------PWAF--YPRVAERDTAIRLPGVS 343 (369)
T ss_dssp TTCSSCEEECCTTTEEEEEECTTTCSBCCTTC---EEEEEEEEEE------------TTEE--EEEEEEEEEEEEECCST
T ss_pred cCCCcccccCCCCCeEEEEECCCCCcCCCCCC---ceEEEEEEcC------------cccc--cccccCCceEEEecCCC
Confidence 58999 999999999976788777765 8999999732 1111 124788888877543
Q ss_pred C-------cEEEEccCCCeEecCCcee
Q 005406 536 G-------RLKIIDRKKNIFKLAQGEY 555 (698)
Q Consensus 536 G-------~l~i~GR~~d~ikls~G~~ 555 (698)
| .+..++|.++..|+ .|.|
T Consensus 344 g~~~d~~~~v~~~~~~~~~~~i-~gv~ 369 (369)
T 3hgu_A 344 GFAGDRLADIEPLKISEGRKVI-EGVY 369 (369)
T ss_dssp TCSSCEEEEEEECC-------------
T ss_pred CCcCcccccceeccccCCCcee-eecC
Confidence 2 35667888888887 5653
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.30 E-value=5.7e-12 Score=107.57 Aligned_cols=95 Identities=18% Similarity=0.143 Sum_probs=63.3
Q ss_pred ccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcC---CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHH
Q 005406 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS---FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPR 618 (698)
Q Consensus 542 GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (698)
.|.|||||+ +|.||+|.|||++|.+||+|.+++|++.+ .++.++++|+..+.. . .+..
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~----------~--------~~~~ 61 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLF----------T--------DDYG 61 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTC----------C--------CCHH
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecc----------c--------cccc
Confidence 389999998 89999999999999999999999988743 346788888877632 0 1222
Q ss_pred HHHHHHHHHHHHHHh-CCCCCcceeeEEEEec--CCCCCCCCccCcccCCCh
Q 005406 619 ARAAVLAEMNAVGKE-GQLRGFEYAKAVTLMP--EPFSVENGLLTPTFKIKR 667 (698)
Q Consensus 619 ~~~~i~~~l~~~~~~-~~L~~~~~p~~i~~~~--~~p~~~~~~~T~~GKi~R 667 (698)
..+.+.++|++.++. .+++ ..+.+++ ++| +| +||++|
T Consensus 62 ~~~~l~~~i~~~l~~~~gv~-----~~v~~v~~~~lP------rt-sGKi~R 101 (109)
T 3lax_A 62 RLQALTREITRQLKDEILVT-----PRVKLVPKGALP------KS-EGKAVR 101 (109)
T ss_dssp HHHHHHHHHHHHHHHHHSSC-----CEEEEECTTCSC------CC----CCC
T ss_pred hhhhhHHHHHHHHHHHhCCc-----cceEEEcCCeec------CC-CCCcch
Confidence 223334444444431 1232 3566664 799 98 799988
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.21 E-value=2.7e-11 Score=103.13 Aligned_cols=97 Identities=14% Similarity=0.140 Sum_probs=62.7
Q ss_pred ccCCCeEecCCceeecchHHHHHHhcCcCceeEEEEEcC---CCCeEEEEEEcChhHHHHHHHHcCCCcccHHHhhCCHH
Q 005406 542 DRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIYGDS---FNSCLVAIVAVDPDVLKDWAASQGIKFEDLEQLCNDPR 618 (698)
Q Consensus 542 GR~~d~ikls~G~~v~p~eIE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (698)
||.||+||+ +|.||+|.+||+++.+||+|.++++++.+ .++.++++|++ ++.. .+ . ....++
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~--------~~--~---~~~~~~ 65 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLF--------TD--D---YGRLQA 65 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTC--------CC--C---HHHHHH
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCcc--------cc--c---hhHHHH
Confidence 899999998 89999999999999999999988776632 34678888887 4210 00 0 000122
Q ss_pred HHHHHHHHHHHHHHhCCCCCcceeeEEEEec--CCCCCCCCccCcccCCChH
Q 005406 619 ARAAVLAEMNAVGKEGQLRGFEYAKAVTLMP--EPFSVENGLLTPTFKIKRP 668 (698)
Q Consensus 619 ~~~~i~~~l~~~~~~~~L~~~~~p~~i~~~~--~~p~~~~~~~T~~GKi~R~ 668 (698)
+.+.+.+.+.+.. +++ | .|.+++ ++| +| +||++|.
T Consensus 66 l~~~i~~~l~~~~---~~~----~-~v~~v~~~~lP------rt-sGKi~R~ 102 (109)
T 3gxs_A 66 LTREITRQLKDEI---LVT----P-RVKLVPKGALP------KS-EGKAVRV 102 (109)
T ss_dssp HHHHHHHHHHHHH---SSC----C-EEEEECTTCSC------CC----CCCE
T ss_pred HHHHHHHHHHHhh---CCc----e-EEEEECCCCcc------CC-CCceEEE
Confidence 3333444443322 233 2 688887 899 99 9999984
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.93 E-value=6.2e-09 Score=113.41 Aligned_cols=133 Identities=14% Similarity=0.171 Sum_probs=85.6
Q ss_pred EEEEEecCCCCCHHHHHHHHHHh-CCcee-cccCcchhcchhcccCCCCCCCCCccCC-CCC-cEEEEEecCCCC-----
Q 005406 413 VRFMGSGASPLSPDVMDFLKVCF-GCQVM-EGYGMTETSCIISAIDKGDNLSGHVGSP-NPA-CEIKLVDVPEMN----- 483 (698)
Q Consensus 413 lr~i~~gG~~l~~~~~~~~~~~~-g~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~~-~~v~i~d~~~~~----- 483 (698)
+..+++||. ......++..+ +.+++ ..|++||+... ++......+...|.. +++ +-+..++.++..
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g--i~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v 376 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFG--INLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVV 376 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEE--ECSCTTSCGGGCCEEECTTSSEEEEEECSTTCCSSCE
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceee--eccCCCCCcccCceeecCCcEEEEEEeccccCCCcEe
Confidence 667777873 44445555544 67777 99999996322 221111111222221 222 445566544321
Q ss_pred CCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEec----CCcEEEEccCCCeEecCCceeecch
Q 005406 484 YTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP----GGRLKIIDRKKNIFKLAQGEYVAPE 559 (698)
Q Consensus 484 ~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~----~G~l~i~GR~~d~ikls~G~~v~p~ 559 (698)
...+.+.|..+||.|...+ |.|. |++||++++.. ...+.|+||.++++.+ .|+++.+.
T Consensus 377 ~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~ 438 (581)
T 4eql_A 377 DLEDVKLGCTYEPVVTNFA---GLYR--------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEE 438 (581)
T ss_dssp EGGGCCTTCEEEEEEECSS---SCCS--------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHH
T ss_pred CHHHcCCCceEEEEEeecc---ceee--------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHH
Confidence 1223344568999998742 3332 89999999986 3579999999999997 89999999
Q ss_pred HHHHHHhcC
Q 005406 560 KIENVYAKC 568 (698)
Q Consensus 560 eIE~~l~~~ 568 (698)
+||+++.+.
T Consensus 439 ~v~~al~~a 447 (581)
T 4eql_A 439 DLFKAVSQA 447 (581)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999999643
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.88 E-value=3.2e-08 Score=107.95 Aligned_cols=131 Identities=12% Similarity=0.133 Sum_probs=83.8
Q ss_pred EEEEEecCCCCCHHHHHHHHHHh-CCcee-cccCcchhcchhcccCCCCCCCCCccC-CCCC-cEEEEEecCCCC-----
Q 005406 413 VRFMGSGASPLSPDVMDFLKVCF-GCQVM-EGYGMTETSCIISAIDKGDNLSGHVGS-PNPA-CEIKLVDVPEMN----- 483 (698)
Q Consensus 413 lr~i~~gG~~l~~~~~~~~~~~~-g~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~~v~i~d~~~~~----- 483 (698)
+..++.||. ......++..+ +.+++ .+|++||+... . +......++..+. .+|+ .-+..++.++..
T Consensus 307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g-i-~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~ 381 (609)
T 4b2g_A 307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYFG-L-NLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSR 381 (609)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEEE-E-CSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCS
T ss_pred EEEEccCCh---HHHHHHHHHHcCCCccccCcccccceeee-e-ecCCCCCcccCceeecCCcEEEEEEecccccccccc
Confidence 666777773 33445555544 67776 99999997432 2 2111111122222 1222 445566544320
Q ss_pred -C------CCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEec----CCcEEEEccCCCeEecCC
Q 005406 484 -Y------TSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLP----GGRLKIIDRKKNIFKLAQ 552 (698)
Q Consensus 484 -~------~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~----~G~l~i~GR~~d~ikls~ 552 (698)
. +.+.+.|..+||.|... .|.|. |++||+++++. ...+.|+||.+++|++ .
T Consensus 382 ~~~~~~v~l~eVe~G~~YelViTt~---~GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~ 443 (609)
T 4b2g_A 382 DSPPRLVDLAHVEVGKEYELVITTY---AGLYR--------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-D 443 (609)
T ss_dssp SSCCCCEEGGGCCTTCEEEEEEECT---TSCCS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred CCCCccccHhHcCCCCeEEEehhhh---hhhhh--------------eecCCEEEEeecCCCCcEEEEEEecCCeEEc-c
Confidence 0 12333455899999753 35553 99999999974 3689999999999997 8
Q ss_pred ceeecchHHHHHHh
Q 005406 553 GEYVAPEKIENVYA 566 (698)
Q Consensus 553 G~~v~p~eIE~~l~ 566 (698)
|++|.+.+||+++.
T Consensus 444 Geki~~~~v~~av~ 457 (609)
T 4b2g_A 444 SDKTDEAELQKAVD 457 (609)
T ss_dssp SCCBCHHHHHHHHH
T ss_pred ccCCCHHHHHHHHH
Confidence 99999999999996
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.74 E-value=1.3e-07 Score=102.72 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=88.1
Q ss_pred CcEE---EEEecCCCCCHHHHHHHHHHh-CCcee-cccCcchhcchhcccCCCCCCCCCccC-CCCC-cEEEEEecCCCC
Q 005406 411 GRVR---FMGSGASPLSPDVMDFLKVCF-GCQVM-EGYGMTETSCIISAIDKGDNLSGHVGS-PNPA-CEIKLVDVPEMN 483 (698)
Q Consensus 411 ~~lr---~i~~gG~~l~~~~~~~~~~~~-g~~l~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~~v~i~d~~~~~ 483 (698)
++++ .++.|+. ......++..+ +.+++ .+|++||+... . +......++..+. .+|+ .-+..+..++..
T Consensus 302 Pnl~~i~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g-i-~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~ 376 (581)
T 4epl_A 302 PNAKYVYGIMTGSM---EPYVPKLRHYAGDLPLVSHDYGSSEGWIA-A-NVTPRLSPEEATFAVIPNLGYFEFLPVSETG 376 (581)
T ss_dssp TTCCCEEEECSGGG---GGGHHHHHHHHTTSCEEECCEEETTEEEE-E-CCCTTSCTTTCCEEECTTSCEEEEEEC----
T ss_pred CCCceEEEEeCCCh---HHHHHHHHHHcCCCccccCceeccceeee-e-ecCCCCCccccceeecCCcEEEEEEeccccc
Confidence 4564 4455543 33345555545 67777 99999996332 2 2211122222222 2233 334455433221
Q ss_pred -------CCCCCCCCCccEEEEeCCCccccccCChhhhcccccCCCceecCcEEEEecC----CcEEEEccCCCeEecCC
Q 005406 484 -------YTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPG----GRLKIIDRKKNIFKLAQ 552 (698)
Q Consensus 484 -------~~~~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~~gw~~TGDlg~~~~~----G~l~i~GR~~d~ikls~ 552 (698)
.+.+.+.|..+||.|...+ |-|. |++||++++..- ..+.|+||.++++++ .
T Consensus 377 ~~~~~~v~l~eve~G~~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~-~ 438 (581)
T 4epl_A 377 EGEEKPVGLTQVKIGEEYEVVITNYA---GLYR--------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI-N 438 (581)
T ss_dssp ---CCCEEGGGCCTTCEEEEEEESTT---SCSS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred CCCCceeeHHHcCCCCeEEEEEeecc---ceee--------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe-e
Confidence 1123344568999998742 3332 999999998742 479999999999998 7
Q ss_pred ceeecchHHHHHHhc------Cc--CceeEEEEEcC
Q 005406 553 GEYVAPEKIENVYAK------CK--FVLQCFIYGDS 580 (698)
Q Consensus 553 G~~v~p~eIE~~l~~------~p--~V~~~~V~g~~ 580 (698)
|+++.+.+||+++.+ .. .|.+-.++.+.
T Consensus 439 Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~ 474 (581)
T 4epl_A 439 IDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDV 474 (581)
T ss_dssp SCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEEC
T ss_pred eeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCC
Confidence 999999999999954 22 35666666543
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.58 E-value=2.1 Score=45.13 Aligned_cols=121 Identities=11% Similarity=0.066 Sum_probs=87.4
Q ss_pred CCCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEec
Q 005406 93 PDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINR--PEWLIVDHACSAYSYISVPL 168 (698)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~--~e~~~~~lA~~~~G~~~vpl 168 (698)
++.++++.. ..|.+|. ...+|.+.+...+..++..+...|+.++|++....+-+ ...+...++++..|+.++++
T Consensus 89 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 89 QDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp GGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred hhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 455564433 2555553 34679999988888888888888999999998888753 34445678889999999877
Q ss_pred CCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhc------CCceeEEEEeC
Q 005406 169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISE------IPSVHLIVVVG 216 (698)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~ii~~~ 216 (698)
.. ..++.+...+++.++.+++..+.....+.+.... .+.++.+++-+
T Consensus 167 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gG 219 (437)
T 2y27_A 167 GG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGA 219 (437)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEES
T ss_pred CC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcC
Confidence 65 4788999999999999999988877666543321 24566666543
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=90.99 E-value=2.5 Score=44.53 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=87.6
Q ss_pred CCCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEec
Q 005406 93 PDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINR--PEWLIVDHACSAYSYISVPL 168 (698)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~--~e~~~~~lA~~~~G~~~vpl 168 (698)
++.++++.. ..|.+|. ...+|.+.+...+..++..+...|+.++|++....+-+ ...+...++++..|+.++++
T Consensus 91 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 91 REQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp GGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred hhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 455554432 2565554 34579999988888888888888999999998888753 34455678888999998887
Q ss_pred CCCCCHHHHHHHHhhccceEEEecccchHHHHhhhh------cCCceeEEEEeC
Q 005406 169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS------EIPSVHLIVVVG 216 (698)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~ii~~~ 216 (698)
... .++.+...+++.++.+++..+.....+.+... ..+.++.+++-+
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gG 221 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGA 221 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEES
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECC
Confidence 664 78889999999999999998887666554322 124566666544
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=89.97 E-value=2.2 Score=44.93 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=88.6
Q ss_pred CCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEecC
Q 005406 94 DYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINR--PEWLIVDHACSAYSYISVPLY 169 (698)
Q Consensus 94 d~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~--~e~~~~~lA~~~~G~~~vpl~ 169 (698)
+.++++.. ..|.+|. ...+|.+.+...+..++..+...|+.++|++..+.+-+ ...+..+++++..|+.+++..
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 44554433 2555543 34679999998888888888888999999999888743 445556788899999988876
Q ss_pred CCCCHHHHHHHHhhccceEEEecccchHHHHhhhh------cCCceeEEEEeCC
Q 005406 170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS------EIPSVHLIVVVGG 217 (698)
Q Consensus 170 ~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~ii~~~~ 217 (698)
.. .++.+...+++.++.+++..+.....+.+... .++.++.+++-+.
T Consensus 164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 54 67889999999999999998887766654422 1456776666543
No 45
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=75.38 E-value=43 Score=35.94 Aligned_cols=120 Identities=11% Similarity=-0.048 Sum_probs=83.3
Q ss_pred CCCCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhH--HH-HHHHHHhcCCeEE
Q 005406 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEW--LI-VDHACSAYSYISV 166 (698)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~--~~-~~lA~~~~G~~~v 166 (698)
.|+.+|++.- ..|.+|. ...+|.+.+...+..+... .++.+++++...++-+..+ .. .+++++..|+.++
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 4566666543 2454443 3468998887766655443 4788999988888765433 33 4788899999988
Q ss_pred ecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhh----hcCCceeEEEEeCC
Q 005406 167 PLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI----SEIPSVHLIVVVGG 217 (698)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~ii~~~~ 217 (698)
... ...++.+...+++.++.+++..+.....+.... ..++.++.+++-+.
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 764 467889999999999999999887766655432 23567777666543
No 46
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=74.78 E-value=21 Score=38.58 Aligned_cols=118 Identities=8% Similarity=0.005 Sum_probs=80.2
Q ss_pred CCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHh--HHHHHHHHHhcCCeEEecC
Q 005406 94 DYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPE--WLIVDHACSAYSYISVPLY 169 (698)
Q Consensus 94 d~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e--~~~~~lA~~~~G~~~vpl~ 169 (698)
+.+|++.. ..|.+|. ...+|.+.+...+......+...++.+++++..+++-.-. +...+++++ .|+..+.+.
T Consensus 192 ~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMN--SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEEC--CSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEe--CCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 56666543 2454443 3468999887766655444333678899998888876543 333456777 999888775
Q ss_pred CCCCHHHHHHHHhhccceEEEecccchHHHHhhh----hcCCceeEEEEe
Q 005406 170 DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI----SEIPSVHLIVVV 215 (698)
Q Consensus 170 ~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~ii~~ 215 (698)
...++.+...+++.++.+++..+.....+.... ..++.++.+++-
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~g 317 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASG 317 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEEC
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEc
Confidence 578899999999999999999888776665422 134566666653
No 47
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=74.20 E-value=44 Score=35.36 Aligned_cols=118 Identities=16% Similarity=0.013 Sum_probs=81.3
Q ss_pred CCCCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHh-HHHHHHHHHhcCCeEEec
Q 005406 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPE-WLIVDHACSAYSYISVPL 168 (698)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e-~~~~~lA~~~~G~~~vpl 168 (698)
.|+.+|++.- ..|.+|. ...+|.+.+...+..+.. ..++.+++++..+++-.-. -+..+++++..|+.++..
T Consensus 161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 4567776554 3555443 346798888776665544 4588999999888876532 233467788899988876
Q ss_pred CCCCCHHHHHHHHhhccceEEEecccchHHHHhhhhc-CCceeEEEEe
Q 005406 169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFISE-IPSVHLIVVV 215 (698)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~ii~~ 215 (698)
+ ...++.+...+++.++.+++..+.....+...... ...++.+++-
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~g 282 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLG 282 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEEC
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEe
Confidence 5 47889999999999999999988877766554322 1245555543
No 48
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=71.51 E-value=19 Score=36.58 Aligned_cols=105 Identities=14% Similarity=0.003 Sum_probs=69.9
Q ss_pred CCCCCceEEEeecCCccCCc--eEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEe
Q 005406 92 YPDYKYLGTRVRVDGTVGGY--KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINR--PEWLIVDHACSAYSYISVP 167 (698)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~--~e~~~~~lA~~~~G~~~vp 167 (698)
.++.++.+.. ..|.+|.. ..+|.+.+...+..++..+...|+.++|++..+++-+ .--+...++++..|+.+++
T Consensus 89 ~~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 3555565543 25555543 4568888888887777777788999999999888762 2223344555888996665
Q ss_pred cCCCCCHH-----------------------HHHHHHhhccceEEEecccchHHHH
Q 005406 168 LYDTLGPD-----------------------AVKYVVNHAEIEAIFCIPQTLNTLL 200 (698)
Q Consensus 168 l~~~~~~~-----------------------~l~~il~~~~~~~v~~~~~~~~~~~ 200 (698)
.. ..+. .+..++++.++.++++.+.....+.
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 43 3344 6666899999999998877655543
No 49
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=70.56 E-value=39 Score=36.32 Aligned_cols=119 Identities=14% Similarity=0.081 Sum_probs=81.6
Q ss_pred CCCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHH---HHHHHHhcCCeEEe
Q 005406 93 PDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLI---VDHACSAYSYISVP 167 (698)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~---~~lA~~~~G~~~vp 167 (698)
|+.+|++.- ..|.+|. ...+|.+.+...+..++.. .++.++|++..+++-...+-. .+++++..|+.++.
T Consensus 190 ~~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~ 264 (544)
T 3o83_A 190 ADEVAFFQL--SGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVM 264 (544)
T ss_dssp TTSEEEEEE--CCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEE
T ss_pred ccceEEEEE--CCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEE
Confidence 456666543 2454443 3467999887776665543 578999999988876544433 47888889998887
Q ss_pred cCCCCCHHHHHHHHhhccceEEEecccchHHHHhhh----hcCCceeEEEEeCC
Q 005406 168 LYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI----SEIPSVHLIVVVGG 217 (698)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~ii~~~~ 217 (698)
.. ...+..+...+++.++.+++..+.....+.... ..++.++.+++-+.
T Consensus 265 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~ 317 (544)
T 3o83_A 265 AP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGA 317 (544)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESS
T ss_pred CC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCC
Confidence 65 457888889999999999999887766655432 23466777666543
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=68.89 E-value=50 Score=35.18 Aligned_cols=117 Identities=15% Similarity=0.052 Sum_probs=77.7
Q ss_pred CCCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEEec
Q 005406 93 PDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWL--IVDHACSAYSYISVPL 168 (698)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~--~~~lA~~~~G~~~vpl 168 (698)
|+.+|++.- ..|.+|. ...+|.+.+...+..++.. .++.++|++...++-.-.+- ..+++++ .|+..+..
T Consensus 169 ~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMY--TSGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEE--ECC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEE--CCcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 455555443 2555443 3468998887776665544 48899999988887764333 2345555 88887776
Q ss_pred CCCCCHHHHHHHHhhccceEEEecccchHHHHhhh----hcCCceeEEEEeC
Q 005406 169 YDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI----SEIPSVHLIVVVG 216 (698)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~ii~~~ 216 (698)
+...++.+...+++.++.+++..+.....+.... ..++.++.++.-+
T Consensus 243 -~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG 293 (517)
T 3r44_A 243 -PQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGG 293 (517)
T ss_dssp -SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECS
T ss_pred -CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECC
Confidence 4578899999999999999999887766654432 1356677666543
No 51
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=65.90 E-value=86 Score=34.24 Aligned_cols=119 Identities=12% Similarity=0.012 Sum_probs=81.5
Q ss_pred CCCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhH--HH-HHHHHHhcCCeEEe
Q 005406 93 PDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEW--LI-VDHACSAYSYISVP 167 (698)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~--~~-~~lA~~~~G~~~vp 167 (698)
|+.+|++.- ..|.+|. ...+|.+.+...+...... .++.+++++..+++-+..+ .. .+++++..|+.++.
T Consensus 183 ~~~~a~ii~--TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQL--SGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEE--CCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 456666543 2555443 4568998887766655544 4688999999988855433 32 47888888998887
Q ss_pred cCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhh------cCCceeEEEEeCC
Q 005406 168 LYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS------EIPSVHLIVVVGG 217 (698)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~ii~~~~ 217 (698)
... .....+...+++.++.++...+.....+..... .++.++.+++-++
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe 312 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGA 312 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESS
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCC
Confidence 654 567788889999999999998877666554321 3566777666543
No 52
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=62.82 E-value=56 Score=35.13 Aligned_cols=104 Identities=10% Similarity=-0.066 Sum_probs=73.6
Q ss_pred CCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeC-
Q 005406 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ- 329 (698)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~- 329 (698)
.|+.+|++....+..+. ..-.+|.+.+...+..+... .++.++|++..++|-+..+ ....++++..|+..+.++
T Consensus 32 ~p~~~A~~~~~~~~~~~-~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 109 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSE-FPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY-VMTIYALWRVAATPVPINP 109 (549)
T ss_dssp HTTSEEEEEESSCCCCS-SCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEeCCCccccc-ccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHhCCEEEccCC
Confidence 46788877653221111 12467888887665554443 5788999999998876432 344677889999988877
Q ss_pred -CChhhHHHHHhhhcCcEEeechHHHHHHHH
Q 005406 330 -GDNLKLMDDLAVLKPTIFPSVPRLYNRIYA 359 (698)
Q Consensus 330 -~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~ 359 (698)
.....+...++..++.+++..+.....+..
T Consensus 110 ~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 110 MYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 577889999999999999998877665543
No 53
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=60.17 E-value=41 Score=36.06 Aligned_cols=98 Identities=11% Similarity=0.135 Sum_probs=72.1
Q ss_pred CCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeC-
Q 005406 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ- 329 (698)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~- 329 (698)
.|+.+|++... +| -.+|++.+...+..+... .++.++|++..++|-+..+ ....++++..|+..+..+
T Consensus 35 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLINGA---NG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF-VLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEECC---CC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCEEeccCC
Confidence 57788866432 22 458998887665554443 6789999999998876432 344677888999988876
Q ss_pred -CChhhHHHHHhhhcCcEEeechHHHHHHHH
Q 005406 330 -GDNLKLMDDLAVLKPTIFPSVPRLYNRIYA 359 (698)
Q Consensus 330 -~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~ 359 (698)
.....+...++..++.+++..+.....+..
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 577889999999999999988876665544
No 54
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=58.98 E-value=40 Score=35.89 Aligned_cols=120 Identities=13% Similarity=0.035 Sum_probs=79.0
Q ss_pred CCCCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHh-HHHHHHHHHhcCCeEEec
Q 005406 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPE-WLIVDHACSAYSYISVPL 168 (698)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e-~~~~~lA~~~~G~~~vpl 168 (698)
.|+.+|++.- ..|.+|. ...+|.+.+...+..... ..++.++|++..+++-+.. .+..+++++..|+.++.+
T Consensus 142 ~~~d~a~i~~--TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 142 KGDENFYIIY--TSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CTTSEEEEEE--ECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 3455665543 2555443 346798888766655443 4578999999988886532 234578888999998887
Q ss_pred CCC--CCHHHHHHHHhhccceEEEecccchHHHHhhh----hcCCceeEEEEeC
Q 005406 169 YDT--LGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI----SEIPSVHLIVVVG 216 (698)
Q Consensus 169 ~~~--~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~ii~~~ 216 (698)
... ..++.+...+++.++.+++..+.....+.... ..++.++.+++-+
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G 270 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCG 270 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECS
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEec
Confidence 653 56788899999999999999887665544322 1245566665543
No 55
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=58.64 E-value=46 Score=35.35 Aligned_cols=96 Identities=10% Similarity=-0.021 Sum_probs=71.7
Q ss_pred CCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeC-
Q 005406 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ- 329 (698)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~- 329 (698)
.|+.+|++. .+-.+|++.+...+..+... .++.++|++..++|-+..+ ....++++..|+..+..+
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEM-IELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCCEEEecCC
Confidence 467788764 13568999887766555443 5788999999998876432 344677888999998877
Q ss_pred -CChhhHHHHHhhhcCcEEeechHHHHHHHH
Q 005406 330 -GDNLKLMDDLAVLKPTIFPSVPRLYNRIYA 359 (698)
Q Consensus 330 -~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~ 359 (698)
.....+...++..++.+++..+.....+..
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 119 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDIVAG 119 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHHHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhhHHh
Confidence 477888999999999999998876655433
No 56
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=57.88 E-value=74 Score=34.08 Aligned_cols=98 Identities=7% Similarity=-0.125 Sum_probs=70.6
Q ss_pred CCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccc---ccccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeC-
Q 005406 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL---MVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ- 329 (698)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~- 329 (698)
.|+.+|++....+ .+-.+|.+.+...+..+.. ..++.++|++..++|-+..+ ....++++..|+..+..+
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 104 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTANP 104 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHhcCcEEEecCc
Confidence 4567776543211 2457899888766555443 36788999999998866332 344677888999988877
Q ss_pred -CChhhHHHHHhhhcCcEEeechHHHHHH
Q 005406 330 -GDNLKLMDDLAVLKPTIFPSVPRLYNRI 357 (698)
Q Consensus 330 -~~~~~l~~~i~~~~~t~~~~~P~~~~~l 357 (698)
.....+...++..++.+++..+.....+
T Consensus 105 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred ccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 4678899999999999999988766544
No 57
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=57.85 E-value=90 Score=33.70 Aligned_cols=120 Identities=15% Similarity=0.035 Sum_probs=78.3
Q ss_pred CCCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhH--HHHHHHHHhcCCeEEec
Q 005406 93 PDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEW--LIVDHACSAYSYISVPL 168 (698)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~--~~~~lA~~~~G~~~vpl 168 (698)
|+.+|++.- ..|.+|. ...+|.+ +....... .....++.++|++..+++-+..+ ...+++++..|+..+..
T Consensus 205 ~~d~a~i~~--TSGTTG~PKgV~~sh~-~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~ 279 (570)
T 3c5e_A 205 SQEASAIYF--TSGTSGLPKMAEHSYS-SLGLKAKM--DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVH 279 (570)
T ss_dssp TTSEEEEEE--CCCSSSSCCEEEEEHH-HHHHHHHH--HTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEE
T ss_pred CCCcEEEEE--CCCCCCCCCEEEechH-HHHhhhhh--hhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEe
Confidence 455665543 3555443 3457887 43311111 12456889999988888766433 33567888889988876
Q ss_pred CC-CCCHHHHHHHHhhccceEEEecccchHHHHhhh---hcCCceeEEEEeCC
Q 005406 169 YD-TLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI---SEIPSVHLIVVVGG 217 (698)
Q Consensus 169 ~~-~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~ii~~~~ 217 (698)
.. ...++.+...+++.++.+++..+.....+.... ..++.++.+++-+.
T Consensus 280 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe 332 (570)
T 3c5e_A 280 LLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGE 332 (570)
T ss_dssp CCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESS
T ss_pred cCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCC
Confidence 54 678999999999999999999887776665431 12456676666543
No 58
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=57.53 E-value=25 Score=38.02 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=71.9
Q ss_pred CCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeC--
Q 005406 255 PEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ-- 329 (698)
Q Consensus 255 ~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~-- 329 (698)
|+.++.+.+..+.++ ..+|.+.+...+..+... .++.++|++..++|-+..+ ....++++..|+..+..+
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~ 108 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDI 108 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEECCTT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH-HHHHHHHHHcCCEEeecCCc
Confidence 344555544444333 468998887666555443 5789999999998866432 444677889999988876
Q ss_pred CChhhHHHHHhhhcCcEEeechHHHHHHHH
Q 005406 330 GDNLKLMDDLAVLKPTIFPSVPRLYNRIYA 359 (698)
Q Consensus 330 ~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~ 359 (698)
.....+...++..++.+++.....+..+..
T Consensus 109 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 138 (550)
T 3rix_A 109 YNERELLNSMNISQPTVVFVSKKGLQKILN 138 (550)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGHHHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEcHHHHHHHHH
Confidence 577889999999999999998887766554
No 59
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=56.67 E-value=79 Score=33.47 Aligned_cols=120 Identities=8% Similarity=-0.013 Sum_probs=81.0
Q ss_pred CCCCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEec
Q 005406 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEW-LIVDHACSAYSYISVPL 168 (698)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~-~~~~lA~~~~G~~~vpl 168 (698)
.++.+|++.- ..|.+|. ...+|.+.+...+..+.. ..++.+++++..+++-+..+ +..+++++..|+.++.+
T Consensus 141 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 141 KEHETFYIIY--TSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CTTSEEEEEE--ECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 3456666543 2555554 346788888766655543 45788999999888866433 34578889999998876
Q ss_pred CCC--CCHHHHHHHHhhccceEEEecccchHHHHhhh----hcCCceeEEEEeC
Q 005406 169 YDT--LGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI----SEIPSVHLIVVVG 216 (698)
Q Consensus 169 ~~~--~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~ii~~~ 216 (698)
... ..++.+...+++.++.+++..+.....+.... ..++.++.++..+
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G 269 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCG 269 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECS
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEec
Confidence 543 46788889999999999999887766554322 1245566555543
No 60
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=56.16 E-value=43 Score=33.79 Aligned_cols=119 Identities=13% Similarity=0.075 Sum_probs=75.7
Q ss_pred HHhCCCCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHh-HHHHHHHHHhcCCeE
Q 005406 89 VENYPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPE-WLIVDHACSAYSYIS 165 (698)
Q Consensus 89 a~~~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e-~~~~~lA~~~~G~~~ 165 (698)
.+-+.|.+|++.- ..|.+|. ...+|.+.+...+..++. ..++.++|++..++|-.-. -+..++..+..|+..
T Consensus 32 ~~w~~d~~a~Il~--TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~ 106 (358)
T 4gs5_A 32 EKWLGGAREFVLH--TSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWEL 106 (358)
T ss_dssp HHHHHTCSEEEEE--EECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEE
T ss_pred hccCCCCCEEEEE--CCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEE
Confidence 3445677777653 2555554 346899988776665554 4578999999888876532 234455666778777
Q ss_pred EecCCCCCHHHHHHHHhhccceEEEecccchHHHHhhhh---cCCceeEEEEe
Q 005406 166 VPLYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS---EIPSVHLIVVV 215 (698)
Q Consensus 166 vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~ii~~ 215 (698)
+...+... ....+++.++.+++..+..+..+.+... .++.++.+++-
T Consensus 107 ~~~~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~g 156 (358)
T 4gs5_A 107 TVTEPTAN---PLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLG 156 (358)
T ss_dssp EEECCCSC---TTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEEC
T ss_pred EecCcccc---HHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEc
Confidence 76665433 2346788899999988776666554321 34556655543
No 61
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=55.52 E-value=60 Score=35.83 Aligned_cols=121 Identities=12% Similarity=0.016 Sum_probs=79.3
Q ss_pred CCCCceEEEeecCCccCCc--eEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEEec
Q 005406 93 PDYKYLGTRVRVDGTVGGY--KWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWL--IVDHACSAYSYISVPL 168 (698)
Q Consensus 93 pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~--~~~lA~~~~G~~~vpl 168 (698)
|+.++++.- ..|.+|.. ..+|.+.+...+..... ...++.++|++....+-+..+- ..+++.+..|++.+..
T Consensus 255 ~~d~a~ily--TSGTTG~PKgV~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 255 AEDPLFILY--TSGSTGKPKGVLHTTGGYLVYAATTFK--YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp TTSEEEEEE--ECCSSSSCEEEEEESHHHHHHHHHHHH--HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred CCCCEEEEe--ccCCCCCCceEEECchHHHHHHHHHHH--HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 455665443 25555543 35677766544322111 2357889999888776654332 4467899999998887
Q ss_pred CCC---CCHHHHHHHHhhccceEEEecccchHHHHhhhh------cCCceeEEEEeCC
Q 005406 169 YDT---LGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS------EIPSVHLIVVVGG 217 (698)
Q Consensus 169 ~~~---~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~ii~~~~ 217 (698)
... ..++.+..++++.++.++++.+.....+..... .++.++.+++.+.
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 388 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESS
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecC
Confidence 642 467889999999999999998887766654322 2466777766543
No 62
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=54.48 E-value=89 Score=32.61 Aligned_cols=104 Identities=12% Similarity=0.009 Sum_probs=71.9
Q ss_pred CCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeCC
Q 005406 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQG 330 (698)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~ 330 (698)
.|+.+|++.........-....+|.+.+...+..+... .+. ++|++..++|-+..+ ....++++..|+..+.++.
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEeeCC
Confidence 57788877654321111134678999887766555443 454 899999888866432 3446778889999887753
Q ss_pred -----ChhhHHHHHhhhcCcEEeechHHHHHHHH
Q 005406 331 -----DNLKLMDDLAVLKPTIFPSVPRLYNRIYA 359 (698)
Q Consensus 331 -----~~~~l~~~i~~~~~t~~~~~P~~~~~l~~ 359 (698)
....+...++..++.+++..+.....+..
T Consensus 115 ~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 45778889999999999998877665543
No 63
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=51.63 E-value=62 Score=34.50 Aligned_cols=95 Identities=13% Similarity=0.036 Sum_probs=69.8
Q ss_pred CCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeC-
Q 005406 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ- 329 (698)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~- 329 (698)
.|+.+|++.. +-.+|++.+...+..+... .++.++|++..++|-+..+ ....++++..|+..+..+
T Consensus 36 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD---------TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS---------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC---------CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCc
Confidence 4667776532 2358998887666554443 5788999999998876432 344677888999988876
Q ss_pred -CChhhHHHHHhhhcCcEEeechHHHHHHH
Q 005406 330 -GDNLKLMDDLAVLKPTIFPSVPRLYNRIY 358 (698)
Q Consensus 330 -~~~~~l~~~i~~~~~t~~~~~P~~~~~l~ 358 (698)
.....+...++..++..++..+.....+.
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 135 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQNVT 135 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHHHHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhhHHH
Confidence 47788999999999999999887665543
No 64
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=51.27 E-value=91 Score=32.94 Aligned_cols=96 Identities=15% Similarity=0.079 Sum_probs=67.4
Q ss_pred CCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeC-
Q 005406 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ- 329 (698)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~- 329 (698)
.|+.+|++... .+..+|++.+...+..+... .++.++|++..++|-+..+ ....++++..|+..+..+
T Consensus 15 ~p~~~a~~~~~-------~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVPA-------RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEETT-------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEcC-------CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCC
Confidence 46777766421 13568998887666554443 5788999999998876433 344677888999988877
Q ss_pred -CChhhHHHHHhhhcCcEEee--chHHHHHH
Q 005406 330 -GDNLKLMDDLAVLKPTIFPS--VPRLYNRI 357 (698)
Q Consensus 330 -~~~~~l~~~i~~~~~t~~~~--~P~~~~~l 357 (698)
.....+...++..+++.++. .+.....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 46788888999999999887 55544433
No 65
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=50.51 E-value=72 Score=35.29 Aligned_cols=120 Identities=10% Similarity=-0.059 Sum_probs=76.2
Q ss_pred CCCCceEEEeecCCccCCce--EEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhH-H-HHHHHHHhcCCeEEec
Q 005406 93 PDYKYLGTRVRVDGTVGGYK--WMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEW-L-IVDHACSAYSYISVPL 168 (698)
Q Consensus 93 pd~~al~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~-~-~~~lA~~~~G~~~vpl 168 (698)
|+.+|++.- ..|.+|..+ .+|.+.+...+.... -...++.++|++....+-+... . ..+++.+..|++.+..
T Consensus 261 ~~d~a~ily--TSGTTG~PKgV~~sh~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~ 336 (663)
T 1ry2_A 261 SEDPLFLLY--TSGSTGAPKGVQHSTAGYLLGALLTM--RYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVF 336 (663)
T ss_dssp TTSCCEEEE--ECCSSSSCEEEEECSHHHHHHHHHHH--HHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEE
T ss_pred CCCceEEEe--ccCCCCCCceEEEchhHHHHHHHHHH--HHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEE
Confidence 456666543 255555433 456666543332211 1246789999887777655322 2 3457889999998877
Q ss_pred CCC---CCHHHHHHHHhhccceEEEecccchHHHHhhhh------cCCceeEEEEeC
Q 005406 169 YDT---LGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFIS------EIPSVHLIVVVG 216 (698)
Q Consensus 169 ~~~---~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~ii~~~ 216 (698)
... ..++.+..++++.++.++++.+.....+..... .++.++.++..+
T Consensus 337 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gG 393 (663)
T 1ry2_A 337 EGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVG 393 (663)
T ss_dssp CSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECS
T ss_pred CCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEc
Confidence 642 467889999999999999998877666654321 245566666543
No 66
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=49.15 E-value=1.1e+02 Score=33.59 Aligned_cols=120 Identities=13% Similarity=0.052 Sum_probs=82.1
Q ss_pred CCCCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEec
Q 005406 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEW-LIVDHACSAYSYISVPL 168 (698)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~-~~~~lA~~~~G~~~vpl 168 (698)
.|+.+|++.- ..|.+|. ...+|.+.+...+. .....++.+++++..+++-+... +..+++.+..|+.++..
T Consensus 162 ~~~d~a~iiy--TSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINF--SSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEE--EBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 3667776543 2555554 34578877644332 22345788999999988876433 34467888899987776
Q ss_pred C-CCCCHHHHHHHHhhccceEEEecccchHHHHhhh-hcCCceeEEEEeCC
Q 005406 169 Y-DTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI-SEIPSVHLIVVVGG 217 (698)
Q Consensus 169 ~-~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~ii~~~~ 217 (698)
+ ....++.+...+++.++.+++........+.... ..++.++.+++-++
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe 286 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGD 286 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeC
Confidence 3 3568899999999999999999887766655432 34567787776554
No 67
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=48.02 E-value=1e+02 Score=33.26 Aligned_cols=92 Identities=11% Similarity=0.052 Sum_probs=67.1
Q ss_pred CCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeC-
Q 005406 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ- 329 (698)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~- 329 (698)
.|+.+|++. . +-.+|.+.+...+..+... .++.++|++..++|-+..+ ....++++..|+..+..+
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEEeCC
Confidence 467777653 1 2468998887665544433 5788999999998866432 334677888999988877
Q ss_pred -CChhhHHHHHhhhcCcEEeechHHHH
Q 005406 330 -GDNLKLMDDLAVLKPTIFPSVPRLYN 355 (698)
Q Consensus 330 -~~~~~l~~~i~~~~~t~~~~~P~~~~ 355 (698)
.....+...++..++.+++..+....
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 46788888999999999998776543
No 68
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=47.12 E-value=90 Score=33.79 Aligned_cols=94 Identities=12% Similarity=0.000 Sum_probs=69.3
Q ss_pred CCCCeEEEEecCCCCCCcceeeechHHHHHHHHhccc---ccccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeC-
Q 005406 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSL---MVQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ- 329 (698)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~- 329 (698)
.|+.+|++..... | ....+|.+.+...+..+.. ..++.++|++..++|-+..+ ....++++..|+..+...
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~-~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDF-WYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCEEEEeCCc
Confidence 5788887765331 2 2467899888766555444 36889999999998876432 344677888999988776
Q ss_pred -CChhhHHHHHhhhcCcEEeechH
Q 005406 330 -GDNLKLMDDLAVLKPTIFPSVPR 352 (698)
Q Consensus 330 -~~~~~l~~~i~~~~~t~~~~~P~ 352 (698)
.....+...++..++.++++.+.
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCHHHHHHHHHhcCCCEEEEecc
Confidence 57788999999999999887654
No 69
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=46.85 E-value=1.2e+02 Score=32.54 Aligned_cols=99 Identities=11% Similarity=0.007 Sum_probs=70.9
Q ss_pred CCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeCC
Q 005406 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQG 330 (698)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~ 330 (698)
.|+.+|++....+ .+-.+|.+.+...+..+... .++.++|++..++|-+..+ ....++++..|+..+.+..
T Consensus 24 ~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPL-IQAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH-HHHHHHHHHhCcEEEEecC
Confidence 5678887665411 24578999887666555443 5788999999998876432 3446788899999887764
Q ss_pred -----ChhhHHHHHhhhcCcEEeechHHHHHHH
Q 005406 331 -----DNLKLMDDLAVLKPTIFPSVPRLYNRIY 358 (698)
Q Consensus 331 -----~~~~l~~~i~~~~~t~~~~~P~~~~~l~ 358 (698)
....+...++..++.+++..+.....+.
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 2356777888999999998887766553
No 70
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=44.15 E-value=83 Score=33.80 Aligned_cols=113 Identities=11% Similarity=-0.029 Sum_probs=74.9
Q ss_pred CCccCC--ceEEeHHHHHHHHHHHHHHHH-----hCCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEecCCCCCHHH
Q 005406 105 DGTVGG--YKWMTYGEVSAARKEIGSGLL-----FHGLQKGVRIGLYLINRPEW-LIVDHACSAYSYISVPLYDTLGPDA 176 (698)
Q Consensus 105 ~~~~~~--~~~~Ty~el~~~~~~la~~L~-----~~gv~~g~~V~i~~~n~~e~-~~~~lA~~~~G~~~vpl~~~~~~~~ 176 (698)
.|.+|. ...+|.+.+...+..++..+. ...+...+++..+.+....+ +..++.++..|+..+........+.
T Consensus 184 SGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~ 263 (562)
T 3ite_A 184 SGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDD 263 (562)
T ss_dssp CC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHS
T ss_pred CCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHH
Confidence 555543 345799999888877777654 23466777887777665433 3346778888988876554444566
Q ss_pred HHHHHhhccceEEEecccchHHHHhhhhcCCceeEEEEeCC
Q 005406 177 VKYVVNHAEIEAIFCIPQTLNTLLSFISEIPSVHLIVVVGG 217 (698)
Q Consensus 177 l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~ 217 (698)
+...+++.++.+++..+..+..+......++.++.+++-+.
T Consensus 264 ~~~~i~~~~~t~~~~~P~~l~~~~~~~~~~~~lr~~~~gG~ 304 (562)
T 3ite_A 264 LPRTFRELGVTHAGIVPSLLDQTGLVPEDAPHLVYLGVGGE 304 (562)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHTCCGGGSTTCCEEEEESS
T ss_pred HHHHHHHcCCCEEEcCHHHHhhcccCccccCceEEEEEecC
Confidence 77889999999999888765554433345677777766543
No 71
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A {Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Probab=44.07 E-value=98 Score=33.49 Aligned_cols=103 Identities=12% Similarity=-0.037 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHHhCCCC------CceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC-
Q 005406 77 EIGTLHDNFIYAVENYPDY------KYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLIN- 147 (698)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~------~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n- 147 (698)
...++.+++..--+..||- ..++. +|-.+. ...+|-.-+.+.+..+|.+|.+.|..+ .|.|-...
T Consensus 39 ~~~~~~~l~~~~~~~~~~~~~~~~r~~FGT----~GiRG~~~~~~ln~~~v~~i~~A~a~~l~~~~~~~--~VvVG~D~R 112 (570)
T 3na5_A 39 DLINVAQLTAQYYVLKPEAGNAEHAVKFGT----SGHRGSAGRHSFNEPHILAIAQAIAEERAKNGITG--PCYVGKDTH 112 (570)
T ss_dssp GCCCHHHHHHHHHHCCCCTTCGGGSCCCBT----TBEEECGGGTSSSHHHHHHHHHHHHHHHHHTTCCS--CEEEEECSS
T ss_pred HccChHHHHHHHhccCCCcCCccccceecC----CCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCCC--eEEEEeCCC
Confidence 3456778888878887763 33322 222221 135888888899999999998876432 34444443
Q ss_pred --CHhHHHHHHH-HHhcCCeEEecC--CCCCHHHHHHHHhhcc
Q 005406 148 --RPEWLIVDHA-CSAYSYISVPLY--DTLGPDAVKYVVNHAE 185 (698)
Q Consensus 148 --~~e~~~~~lA-~~~~G~~~vpl~--~~~~~~~l~~il~~~~ 185 (698)
|.++....++ +...|+-++..+ --.|...+.+.+...+
T Consensus 113 ~~S~~~~~~a~~~L~a~Gi~V~~~~d~g~~PTP~vsfav~~~~ 155 (570)
T 3na5_A 113 ALSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHN 155 (570)
T ss_dssp TTHHHHHHHHHHHHHHTTCCEEEEGGGCCCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCCCEEEEeCCCCccChHHHHHHHHHhC
Confidence 3334444444 455566655433 4567788888877654
No 72
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=43.31 E-value=93 Score=23.36 Aligned_cols=37 Identities=5% Similarity=-0.007 Sum_probs=28.0
Q ss_pred chHHHHHHhcCcCceeEEEEEcCCCCeEEEEEEcChhH
Q 005406 558 PEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDV 595 (698)
Q Consensus 558 p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~ 595 (698)
..++++.+.+.|.|.+|..+.-+ .++++-+.+++.+.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~-~D~ll~v~~~d~~~ 51 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGE-YDLIVKVETDTLKD 51 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSS-CSEEEEEEESSHHH
T ss_pred HHHHHHHHhCCCCeeEEEEEccc-CCEEEEEEECCHHH
Confidence 37899999999999999887532 56666666766643
No 73
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=42.05 E-value=96 Score=32.76 Aligned_cols=83 Identities=11% Similarity=-0.039 Sum_probs=62.7
Q ss_pred eeechHHHHHHHHhcccc---cccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeC--CChhhHHHHHhhhcCcEEe
Q 005406 274 AVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFP 348 (698)
Q Consensus 274 V~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~ 348 (698)
-.+|.+.+...+..+... .++.++|++..++|-+..+ ....++++..|+..+..+ .....+...++..++.+++
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi 105 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA-LVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVV 105 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEE
Confidence 358998887666554443 5788999999998876332 344677888999988877 5778899999999999999
Q ss_pred echHHHHHH
Q 005406 349 SVPRLYNRI 357 (698)
Q Consensus 349 ~~P~~~~~l 357 (698)
..+.....+
T Consensus 106 ~~~~~~~~~ 114 (503)
T 4fuq_A 106 CDPSKRDGI 114 (503)
T ss_dssp ECGGGTTTT
T ss_pred ECchhhHHH
Confidence 887655433
No 74
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=40.54 E-value=1.2e+02 Score=32.49 Aligned_cols=90 Identities=13% Similarity=0.075 Sum_probs=66.0
Q ss_pred CCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeC-
Q 005406 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ- 329 (698)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~- 329 (698)
.|+.+|++. . +-.+|.+.+...+..+... .++.++|++...+|-+..+ ....++++..|+..+.++
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM-VVALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHHCCEEEEcCC
Confidence 467777664 1 2358998887666554443 6788999999998876433 344677889999988877
Q ss_pred -CChhhHHHHHhhhcCcEEeechHH
Q 005406 330 -GDNLKLMDDLAVLKPTIFPSVPRL 353 (698)
Q Consensus 330 -~~~~~l~~~i~~~~~t~~~~~P~~ 353 (698)
.....+...++..++.+++.....
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 477888889999999998876543
No 75
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=39.71 E-value=2e+02 Score=30.28 Aligned_cols=103 Identities=8% Similarity=-0.053 Sum_probs=72.0
Q ss_pred CCCCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCH--hHHHHHHHHHhcCCeEEe
Q 005406 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRP--EWLIVDHACSAYSYISVP 167 (698)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--e~~~~~lA~~~~G~~~vp 167 (698)
.|+.+|++.- ..|.+|. ...+|.+.+...+..+...+ ++.++|++...++-.- .++..+++.+..|+.++.
T Consensus 153 ~~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVY--TSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEe--CCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 4566676543 2555553 34689999888777666554 7888998888777543 234457888999999887
Q ss_pred cCCCCCHHHHHHHHhhccceEEEecccchHHHHh
Q 005406 168 LYDTLGPDAVKYVVNHAEIEAIFCIPQTLNTLLS 201 (698)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~ 201 (698)
.. ...++.+...+ +.++.+++..+.....+..
T Consensus 228 ~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 LG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp CS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 64 56677777777 6789999988877665554
No 76
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=35.73 E-value=83 Score=36.68 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=70.4
Q ss_pred CCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeC-
Q 005406 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ- 329 (698)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~- 329 (698)
.|+.+|++... + +-.+|.+.+...+..+... .++.++|++..++|-+..+ ....++++..|+..+..+
T Consensus 74 ~pd~~Al~~~~---~----~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~-~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLINGP---T----GHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEF-VLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEETT---T----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECC---C----CcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHH-HHHHHHHHHcCCEEEeeCC
Confidence 57888876432 2 2468988887665544443 6789999999999876322 344678889999988877
Q ss_pred -CChhhHHHHHhhhcCcEEeechHHHHHH
Q 005406 330 -GDNLKLMDDLAVLKPTIFPSVPRLYNRI 357 (698)
Q Consensus 330 -~~~~~l~~~i~~~~~t~~~~~P~~~~~l 357 (698)
..+..+...++..++.+++..+.....+
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 5778899999999999999887655444
No 77
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=35.05 E-value=1.4e+02 Score=29.65 Aligned_cols=66 Identities=12% Similarity=-0.012 Sum_probs=47.5
Q ss_pred HHHhCC-CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEeccc
Q 005406 129 GLLFHG-LQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQ 194 (698)
Q Consensus 129 ~L~~~g-v~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~ 194 (698)
.+.+.| +++|+.|.+....+-.-..+-++|...|..++.+-|...+..-...++..++++++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 334555 488887645555677777888888888997776655555555667788999999999764
No 78
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=34.62 E-value=1.3e+02 Score=28.87 Aligned_cols=78 Identities=12% Similarity=-0.015 Sum_probs=54.8
Q ss_pred HHHHHHHHhCCCCCceEEEeecCCccCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcC
Q 005406 83 DNFIYAVENYPDYKYLGTRVRVDGTVGGYKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYS 162 (698)
Q Consensus 83 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G 162 (698)
.+++...+..|+...+... |....+|...|..++.+++.+.+..|.+.|++ ..++.-|+...+.....--...
T Consensus 19 tv~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~----~IVIACNTa~~~al~~lr~~~~ 91 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGIK----MLVIACNTATAAALYDIREKLD 91 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCS----EEEECCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCCccHHHHHHHHHhcC
Confidence 4566667889999888776 66566777789999999999999999988764 5556667766543222222345
Q ss_pred CeEEe
Q 005406 163 YISVP 167 (698)
Q Consensus 163 ~~~vp 167 (698)
..++-
T Consensus 92 iPvig 96 (269)
T 3ist_A 92 IPVIG 96 (269)
T ss_dssp SCEEE
T ss_pred CCEEe
Confidence 55553
No 79
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=33.55 E-value=1.5e+02 Score=27.34 Aligned_cols=43 Identities=12% Similarity=-0.132 Sum_probs=32.8
Q ss_pred hhHHHHHHHHH-HHHhCcEEEEeC--CChhhHHHHHhhhcCcEEee
Q 005406 307 AHIYERANQIV-SVYYGVAVGFYQ--GDNLKLMDDLAVLKPTIFPS 349 (698)
Q Consensus 307 ~h~~~~~~~~~-~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~ 349 (698)
.|..|....-. .-..|..++... -.+..+.+.+++++|+++..
T Consensus 104 ~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 104 IHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 48888777444 446787877765 47889999999999997666
No 80
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=31.74 E-value=1.4e+02 Score=31.55 Aligned_cols=89 Identities=11% Similarity=0.117 Sum_probs=63.2
Q ss_pred CCCCeEEEEecCCCCCCcceeeechHHHHHHHHhcccc---cccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeC-
Q 005406 254 KPEDIATICYTSGTTGTPKGAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQ- 329 (698)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~- 329 (698)
.|+.++++.. +-.+|.+.+...+..+... .++.++|++..+++-+..+ ....++++..|+..+..+
T Consensus 17 ~p~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~-~~~~lA~~~~G~v~vpl~~ 86 (521)
T 3l8c_A 17 QADFPVYDCL---------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDM-LATFVALTKSGHAYIPVDV 86 (521)
T ss_dssp STTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHH-HHHHHHHHHTTCCEEEEET
T ss_pred CCCCcceecC---------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEecCc
Confidence 4566765531 2358998887666554443 6788999998888766422 344677888999888776
Q ss_pred -CChhhHHHHHhhhcCcEEeechH
Q 005406 330 -GDNLKLMDDLAVLKPTIFPSVPR 352 (698)
Q Consensus 330 -~~~~~l~~~i~~~~~t~~~~~P~ 352 (698)
.....+...++..++.+++....
T Consensus 87 ~~~~~~l~~il~~~~~~~ii~~~~ 110 (521)
T 3l8c_A 87 HSAPERILAIIEIAKPSLIIAIEE 110 (521)
T ss_dssp TSCHHHHHHHHHHSCCSEEEESSC
T ss_pred cccHHHHHHHHHhCCCCEEEecCc
Confidence 57788899999999999887543
No 81
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=27.03 E-value=2.4e+02 Score=30.08 Aligned_cols=85 Identities=12% Similarity=0.007 Sum_probs=62.9
Q ss_pred eeeechHHHHHHHHhcccc---cccCCCcEEEEcCChhhHHHHHHHHHHHHhCcEEEEeCC--C-------hhhHHHHHh
Q 005406 273 GAVLTHGNLISNVAGFSLM---VQFYPSDIYMSYLPLAHIYERANQIVSVYYGVAVGFYQG--D-------NLKLMDDLA 340 (698)
Q Consensus 273 gV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~--~-------~~~l~~~i~ 340 (698)
+-.+|.+.+...+..+... .++.++|++..++|-+..+ ....++++..|+..+..+. . ...+...++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEF-VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 3578999887766555443 5788999999998876432 3446778899999888762 2 567888889
Q ss_pred hhcCcEEeechHHHHHHH
Q 005406 341 VLKPTIFPSVPRLYNRIY 358 (698)
Q Consensus 341 ~~~~t~~~~~P~~~~~l~ 358 (698)
..++..++........+.
T Consensus 126 ~~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLVN 143 (576)
T ss_dssp HHCCSEEEECGGGHHHHH
T ss_pred hcCCCEEEecHHHHHHHH
Confidence 999999998877655443
No 82
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=26.70 E-value=1.8e+02 Score=21.48 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=26.3
Q ss_pred chHHHHHHhcCcCceeEEEEEcCCCCeEEEEEEcChh
Q 005406 558 PEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPD 594 (698)
Q Consensus 558 p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~ 594 (698)
..++++.+.++|.|.+|..+..+ .+.++-+.+++.+
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~-~d~l~~v~~~d~~ 50 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGV-YDIVVKVEADSMD 50 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSS-CSEEEEEECSSHH
T ss_pred HHHHHHHHhCCCCeEEEEEEecc-CCEEEEEEECCHH
Confidence 37899999999999999887532 4566666666554
No 83
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=24.19 E-value=1.9e+02 Score=34.88 Aligned_cols=120 Identities=10% Similarity=-0.005 Sum_probs=80.6
Q ss_pred CCCCCceEEEeecCCccCC--ceEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEec
Q 005406 92 YPDYKYLGTRVRVDGTVGG--YKWMTYGEVSAARKEIGSGLLFHGLQKGVRIGLYLINRPEW-LIVDHACSAYSYISVPL 168 (698)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~e~-~~~~lA~~~~G~~~vpl 168 (698)
.|+.+|++.- ..|.+|. ..-+|.+.+... .......++.+++++..+.+-+.+. +.-+++.+..|+.++..
T Consensus 605 ~~~~~ayiiy--TSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMY--TSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEe--CCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 4677776543 3565554 345788777532 2222345788999998888776544 34577888899988877
Q ss_pred CC--CCCHHHHHHHHhhccceEEEecccchHHHHhhh-hcCCceeEEEEeCC
Q 005406 169 YD--TLGPDAVKYVVNHAEIEAIFCIPQTLNTLLSFI-SEIPSVHLIVVVGG 217 (698)
Q Consensus 169 ~~--~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~ii~~~~ 217 (698)
++ ...++.+...+++.++.+++..+.....+.... ..++.++.+++-++
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe 730 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGE 730 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESS
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecC
Confidence 65 367889999999999999998887766554321 12355676666544
No 84
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=23.27 E-value=3e+02 Score=27.26 Aligned_cols=71 Identities=10% Similarity=-0.042 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHhhccceEEEeccc
Q 005406 124 KEIGSGLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYVVNHAEIEAIFCIPQ 194 (698)
Q Consensus 124 ~~la~~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~v~~~~~ 194 (698)
..+.....+--+++|.+..+....+-.-+.+-++|.++|..++.+-|...+..-...++..++++++++..
T Consensus 72 ~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 72 AMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 33443333333678876666777778888888999999998776666665666677889999999998754
No 85
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=23.08 E-value=2e+02 Score=28.36 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=32.4
Q ss_pred CCCCCCEEEEEcCCCH------hHHHHHHH-HHhcCCeEEecCCCC------------CHHHHHHHHhhccceEEEec
Q 005406 134 GLQKGVRIGLYLINRP------EWLIVDHA-CSAYSYISVPLYDTL------------GPDAVKYVVNHAEIEAIFCI 192 (698)
Q Consensus 134 gv~~g~~V~i~~~n~~------e~~~~~lA-~~~~G~~~vpl~~~~------------~~~~l~~il~~~~~~~v~~~ 192 (698)
-+++||+|+|++|.+. +-+-.-.. +-..|..++.-..-. ..+++..++.+-.+++|+|.
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~ 85 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTV 85 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 4789999999999863 22222222 234577665432211 12345555556666666654
No 86
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=22.67 E-value=1.9e+02 Score=29.11 Aligned_cols=61 Identities=7% Similarity=-0.064 Sum_probs=40.3
Q ss_pred HHHhCCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCC-----CCCHHHHHHHHhhcc--ceEEEec
Q 005406 129 GLLFHGLQKGVRIGLYLINRPEWLIVDHACSAYSYISVPLYD-----TLGPDAVKYVVNHAE--IEAIFCI 192 (698)
Q Consensus 129 ~L~~~gv~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl~~-----~~~~~~l~~il~~~~--~~~v~~~ 192 (698)
.|...++++||.|.+-.+....+ ..++...|+.++.++. .+..+.++..+...+ .++|+..
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 34445789999988877665543 3456678987766543 347788888774444 6777643
No 87
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=22.05 E-value=1.6e+02 Score=22.46 Aligned_cols=37 Identities=8% Similarity=0.060 Sum_probs=27.9
Q ss_pred chHHHHHHhcCcCceeEEEEEcCCCCeEEEEEEcChhH
Q 005406 558 PEKIENVYAKCKFVLQCFIYGDSFNSCLVAIVAVDPDV 595 (698)
Q Consensus 558 p~eIE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~ 595 (698)
..++++.+.++|.|.+|..+.-+ .+.++-+.+.+.+.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~-~D~ll~v~~~d~~~ 51 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGP-YDLVALVRLKDVEE 51 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSS-SSEEEEEEESSGGG
T ss_pred HHHHHHHHhcCCCeEEEEEeecC-CCEEEEEEECCHHH
Confidence 47899999999999999887532 46666666766643
No 88
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=21.77 E-value=5.6e+02 Score=24.89 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=37.1
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEec--CC--CCCHHHHHHHHhhccceEEEec
Q 005406 135 LQKGVRIGLYLINRPEWLIVDHACSAYSYISVPL--YD--TLGPDAVKYVVNHAEIEAIFCI 192 (698)
Q Consensus 135 v~~g~~V~i~~~n~~e~~~~~lA~~~~G~~~vpl--~~--~~~~~~l~~il~~~~~~~v~~~ 192 (698)
+++||.|.+..+.-..+. .++...|+.++.+ ++ ....+.++..++..++++|++.
T Consensus 106 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYA---MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp CCTTCEEEEEESCSCCSC---HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcCCCHHHHH---HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEc
Confidence 578898888776655443 2355678766554 43 3577889988887677777763
No 89
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=20.76 E-value=2.4e+02 Score=27.94 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=32.7
Q ss_pred CCCCCCEEEEEcCCCHh------HHHHHHHHH-hcCCeEEecCCCC------------CHHHHHHHHhhccceEEEec
Q 005406 134 GLQKGVRIGLYLINRPE------WLIVDHACS-AYSYISVPLYDTL------------GPDAVKYVVNHAEIEAIFCI 192 (698)
Q Consensus 134 gv~~g~~V~i~~~n~~e------~~~~~lA~~-~~G~~~vpl~~~~------------~~~~l~~il~~~~~~~v~~~ 192 (698)
-+++||+|+|++|.+.- -+-.-...+ ..|..++.-.... ..+++..++.+-++++|+|.
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~ 86 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMST 86 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 47899999999999842 222222222 3677766532111 12234445555556666654
Done!