BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005407
(698 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 106/259 (40%), Gaps = 51/259 (19%)
Query: 13 FLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKVAIAIGTTKSNIIPIEL-LSD 71
L+LDDVW +W L+ +IL+TTR V ++ K ++P+E L
Sbjct: 239 LLILDDVW----DSW-----VLKAFDSQCQILLTTRDKSVTDSVMGPKY-VVPVESSLGK 288
Query: 72 EDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLR-FKRKIE--- 127
E I S ++D+ E II +CKG PL V +G+LLR F + E
Sbjct: 289 EKGLEILSLFVNMKKADLPEQ------AHSIIKECKGSPLVVSLIGALLRDFPNRWEYYL 342
Query: 128 ------EWQRVXXXXXXXXXXVDKGLLGPLLLSYRDLPPPLKKCFLYCAIFPKDSMLEKD 181
+++R+ +D+ + +S L +K + +I KD +
Sbjct: 343 KQLQNKQFKRIRKSSSYDYEALDEA----MSISVEMLREDIKDYYTDLSILQKDVKVPTK 398
Query: 182 KLIRLWMAQDYLKVKGREDMEVVGEEYFESLAMHSLFQDFERSEHDGRKIIRCKMHDIVH 241
L LW DME E E + + + + +G K R +HD+
Sbjct: 399 VLCILW------------DMET---EEVEDILQEFVNKSLLFCDRNG-KSFRYYLHDLQV 442
Query: 242 DFSQFLTKTECSAL-DVNK 259
D FLT+ CS L D++K
Sbjct: 443 D---FLTEKNCSQLQDLHK 458
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 102/254 (40%), Gaps = 50/254 (19%)
Query: 13 FLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKVAIAIGTTKSNIIPIEL-LSD 71
L+LDDVW +W L+ +IL+TTR V ++ K ++P+E L
Sbjct: 245 LLILDDVW----DSW-----VLKAFDSQCQILLTTRDKSVTDSVMGPKY-VVPVESSLGK 294
Query: 72 EDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLR-FKRKIE--- 127
E I S ++D+ E II +CKG PL V +G+LLR F + E
Sbjct: 295 EKGLEILSLFVNMKKADLPEQ------AHSIIKECKGSPLVVSLIGALLRDFPNRWEYYL 348
Query: 128 ------EWQRVXXXXXXXXXXVDKGLLGPLLLSYRDLPPPLKKCFLYCAIFPKDSMLEKD 181
+++R+ +D+ + +S L +K + +I KD +
Sbjct: 349 KQLQNKQFKRIRKSSSYDYEALDEA----MSISVEMLREDIKDYYTDLSILQKDVKVPTK 404
Query: 182 KLIRLWMAQDYLKVKGREDMEVVGEEYFESLAMHSLFQDFERSEHDGRKIIRCKMHDIVH 241
L LW DME E E + + + + +G K R +HD+
Sbjct: 405 VLCILW------------DMET---EEVEDILQEFVNKSLLFCDRNG-KSFRYYLHDLQV 448
Query: 242 DFSQFLTKTECSAL 255
D FLT+ CS L
Sbjct: 449 D---FLTEKNCSQL 459
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 17/110 (15%)
Query: 13 FLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKVAIAIGTTKSNIIPIEL-LSD 71
L+LDDVW +P W L+ +IL+TTR V ++ K +++P+E L
Sbjct: 239 LLILDDVW--DP------W-VLKAFDNQCQILLTTRDKSVTDSVMGPK-HVVPVESGLGR 288
Query: 72 EDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLR 121
E I S + D+ II +CKG PL V +G+LLR
Sbjct: 289 EKGLEILSLFVNMKKEDLPAE------AHSIIKECKGSPLVVSLIGALLR 332
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 328 PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCE---------LCNLQTLDVSGCDNLK 378
P+R +P I L LR L++ P + ELPE L L NLQ+L + ++
Sbjct: 138 PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIR 196
Query: 379 RLPERIGELINLRHL 393
LP I L NL+ L
Sbjct: 197 SLPASIANLQNLKSL 211
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 329 VRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELI 388
+R +P I L +L+ L + +P + L A+ L L+ LD+ GC L+ P G
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253
Query: 389 NLRHLMNSRQDDSSYMPRGMERLTSLRTL 417
L+ L+ + +P + RLT L L
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 356 LPEALCELCNLQTLDVSGCDNLKRLPERIGEL 387
LP + L L+ LD+ GC NL RLP I +L
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Query: 334 KGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERI-GELINLRH 392
+GI+ L ++RYLALG N + ++ AL EL NL L ++G + L+ LP + +L NL+
Sbjct: 57 QGIQYLPNVRYLALGGNK-LHDI-SALKELTNLTYLILTG-NQLQSLPNGVFDKLTNLKE 113
Query: 393 LMNSRQDDSSYMPRGM-ERLTSLRTL 417
L+ S +P G+ ++LT+L L
Sbjct: 114 LVLVENQLQS-LPDGVFDKLTNLTYL 138
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 17/110 (15%)
Query: 13 FLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKVAIAIGTTKSNIIPIEL-LSD 71
L+LDDVW +P W L+ +IL+TT V ++ K +++P+E L
Sbjct: 246 LLILDDVW--DP------W-VLKAFDNQCQILLTTSDKSVTDSVMGPK-HVVPVESGLGR 295
Query: 72 EDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLR 121
E I S + D+ II +CKG PL V +G+LLR
Sbjct: 296 EKGLEILSLFVNMKKEDLPAE------AHSIIKECKGSPLVVSLIGALLR 339
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 6/87 (6%)
Query: 334 KGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERI-GELINLRH 392
+GI+ L ++RYLALG N + ++ AL EL NL L ++G + L+ LP + +L NL+
Sbjct: 57 QGIQYLPNVRYLALGGNK-LHDI-SALKELTNLTYLILTG-NQLQSLPNGVFDKLTNLKE 113
Query: 393 LMNSRQDDSSYMPRGM-ERLTSLRTLG 418
L+ S +P G+ ++LT+L L
Sbjct: 114 LVLVENQLQS-LPDGVFDKLTNLTYLN 139
>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A
Putative P-Loop Containing Kinase With A Circular
Permutation.
pdb|2GAA|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A
Putative P-Loop Containing Kinase With A Circular
Permutation
Length = 359
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 332 IPKGIKKLIHLRYLA-LGWNPWIKELPEALCELCNLQTLDVSGCDNLKRL-PERIGELIN 389
I + + ++I+ +Y L +P + E+ + L + NL D+LK L P ++ E+I
Sbjct: 40 IAEELXQIINEKYHTFLSEHPNVIEVNDRLKPMVNL-------VDSLKTLQPNKVAEMIE 92
Query: 390 LRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKA 430
+ L +D ++ P LTS + V +RG ++ A
Sbjct: 93 NQGLFKDHVEDVNFQPVKYSALTSNNEEXTAVVARGGTANA 133
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 75/196 (38%), Gaps = 10/196 (5%)
Query: 286 SFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTC--LRSIDGPPVRKIPKGIKKLIHLR 343
++ N L L +P+ ++A+ + L + ++ GP IP I KL L
Sbjct: 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP----IPPAIAKLTQLH 104
Query: 344 YLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSY 403
YL + +P+ L ++ L TLD S LP I L NL + S
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 404 MPRGMERLTSLRTLGSFVASRGK-SSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDN 462
+P + L T S SR + + K +LN L ++ S + G D
Sbjct: 165 IPDSYGSFSKLFT--SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK 221
Query: 463 DDEKVDLKSKMRLVEL 478
+ +K+ L +L
Sbjct: 222 NTQKIHLAKNSLAFDL 237
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 308 TIASSKLFDRLTCLRSI--DGPPVRKIPKGIKKLIHLRYLALGWNPWIKELPEA 359
T+ S +FDRL L+ + + ++P+GI++L HL +LAL N +K +P
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHG 153
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 333 PKGIKKLIHLRYLALGWNPWIKELPEALCE-LCNLQTLDVSGCDNLKRLPERIGE-LINL 390
P LI+L+ L LG N + LP + + L L LD+ G + L LP + + L++L
Sbjct: 57 PGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDL-GTNQLTVLPSAVFDRLVHL 114
Query: 391 RHLMNSRQDDSSYMPRGMERLTSLRTLG 418
+ L + + +PRG+ERLT L L
Sbjct: 115 KELFMC-CNKLTELPRGIERLTHLTHLA 141
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 332 IPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLR 391
IPK I + +L L LG N +P+ + +L L LD+S R+P+ + L L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 392 HLMNSRQDDSSYMPR 406
+ S + S +P
Sbjct: 708 EIDLSNNNLSGPIPE 722
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 285 PSFVYNETKLRSLAVPRRLYYKRTIASS-----KLFDRLTCLRSIDGPPVRKIPKGIKKL 339
P + N ++L SL + Y TI SS KL D L ++G +IP+ + +
Sbjct: 411 PPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEG----EIPQELMYV 465
Query: 340 IHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQD 399
L L L +N E+P L NL + +S +P+ IG L NL L S
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 400 DSSYMP 405
S +P
Sbjct: 526 FSGNIP 531
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 328 PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCN-LQTLDVSGCDNLKRLPERIGE 386
P+ +P L L+YL+L N + E+P+ L C+ L LD+SG +P G
Sbjct: 262 PIPPLP-----LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 387 LINLRHLMNSRQDDSSYMPRGMERLTSLRTL 417
L L S + S +P M+ L +R L
Sbjct: 317 CSLLESLALSSNNFSGELP--MDTLLKMRGL 345
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 332 IPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLR 391
IPK I + +L L LG N +P+ + +L L LD+S R+P+ + L L
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 392 HLMNSRQDDSSYMPR 406
+ S + S +P
Sbjct: 705 EIDLSNNNLSGPIPE 719
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 285 PSFVYNETKLRSLAVPRRLYYKRTIASS-----KLFDRLTCLRSIDGPPVRKIPKGIKKL 339
P + N ++L SL + Y TI SS KL D L ++G +IP+ + +
Sbjct: 408 PPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEG----EIPQELMYV 462
Query: 340 IHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQD 399
L L L +N E+P L NL + +S +P+ IG L NL L S
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 400 DSSYMP 405
S +P
Sbjct: 523 FSGNIP 528
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 328 PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCN-LQTLDVSGCDNLKRLPERIGE 386
P+ +P L L+YL+L N + E+P+ L C+ L LD+SG +P G
Sbjct: 259 PIPPLP-----LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 387 LINLRHLMNSRQDDSSYMPRGMERLTSLRTL 417
L L S + S +P M+ L +R L
Sbjct: 314 CSLLESLALSSNNFSGELP--MDTLLKMRGL 342
>pdb|1VEX|A Chain A, F-Spondin Tsr Domain 4
Length = 56
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 604 IFLLMTNWEEWDDCEIAGGKTIMPRLRHL 632
I L++ W EW DC + GK + R R L
Sbjct: 3 IPCLLSPWSEWSDCSVTCGKGMRTRQRML 31
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 339 LIHLRYLALGWNPWIKE-LPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSR 397
L L L + N + + LP+ EL NL LD+S C + P L +L+ ++N
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ-VLNMA 502
Query: 398 QDDSSYMPRGM-ERLTSLRTL 417
+ +P G+ +RLTSL+ +
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKI 523
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 312 SKLFDRLTCLRSIDGPPVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDV 371
SK D+L + + I I K L L L N + ELP + L NL+ LD+
Sbjct: 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDL 277
Query: 372 SGCDNLKRLPERIGELINLRHL 393
S + L LP +G L++
Sbjct: 278 SH-NRLTSLPAELGSCFQLKYF 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,585,606
Number of Sequences: 62578
Number of extensions: 824360
Number of successful extensions: 1630
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1605
Number of HSP's gapped (non-prelim): 37
length of query: 698
length of database: 14,973,337
effective HSP length: 106
effective length of query: 592
effective length of database: 8,340,069
effective search space: 4937320848
effective search space used: 4937320848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)