Query 005407
Match_columns 698
No_of_seqs 351 out of 3056
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 22:57:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.8E-64 3.8E-69 561.6 25.4 579 2-661 253-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 6E-57 1.3E-61 530.2 40.3 575 3-667 289-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4E-30 8.7E-35 260.2 5.8 190 2-196 93-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 5.8E-22 1.3E-26 234.6 17.5 276 268-569 94-374 (968)
5 PLN00113 leucine-rich repeat r 99.9 2.2E-21 4.8E-26 229.7 15.9 355 285-663 181-559 (968)
6 KOG0444 Cytoskeletal regulator 99.8 5.4E-23 1.2E-27 208.0 -2.9 325 284-666 47-377 (1255)
7 PLN03210 Resistant to P. syrin 99.8 1.1E-19 2.3E-24 215.2 19.5 339 268-665 590-944 (1153)
8 KOG0444 Cytoskeletal regulator 99.8 1.6E-21 3.4E-26 197.5 -4.1 320 267-644 55-379 (1255)
9 KOG0472 Leucine-rich repeat pr 99.7 1.2E-19 2.6E-24 175.1 -6.4 309 315-662 202-539 (565)
10 KOG4194 Membrane glycoprotein 99.7 7.5E-18 1.6E-22 170.1 3.3 291 316-658 146-446 (873)
11 KOG4194 Membrane glycoprotein 99.7 1.4E-17 3.1E-22 168.1 3.7 343 266-662 77-427 (873)
12 KOG0472 Leucine-rich repeat pr 99.6 4.2E-18 9.1E-23 164.5 -6.0 319 284-661 83-468 (565)
13 KOG0618 Serine/threonine phosp 99.5 1.3E-16 2.8E-21 169.9 -7.4 97 318-417 44-142 (1081)
14 KOG4658 Apoptotic ATPase [Sign 99.4 1.3E-13 2.7E-18 155.4 5.4 312 288-667 519-845 (889)
15 PRK15387 E3 ubiquitin-protein 99.4 2.4E-12 5.2E-17 142.0 12.2 115 502-662 342-456 (788)
16 PRK15370 E3 ubiquitin-protein 99.3 4.1E-12 8.9E-17 141.1 7.8 78 321-407 201-280 (754)
17 KOG0618 Serine/threonine phosp 99.3 2.1E-13 4.6E-18 145.8 -2.9 83 340-425 241-323 (1081)
18 KOG0617 Ras suppressor protein 99.3 1.5E-13 3.3E-18 117.8 -3.4 82 336-420 29-110 (264)
19 KOG0617 Ras suppressor protein 99.2 8.4E-13 1.8E-17 113.2 -3.0 133 286-424 27-162 (264)
20 PRK15370 E3 ubiquitin-protein 99.2 7.5E-11 1.6E-15 131.2 11.4 99 292-405 199-299 (754)
21 PRK15387 E3 ubiquitin-protein 99.2 4.2E-10 9.2E-15 124.5 14.9 114 474-638 343-456 (788)
22 KOG4237 Extracellular matrix p 99.0 3E-11 6.6E-16 117.5 -2.9 71 496-570 268-340 (498)
23 cd00116 LRR_RI Leucine-rich re 98.9 8.5E-11 1.8E-15 121.1 -5.0 89 473-562 137-232 (319)
24 cd00116 LRR_RI Leucine-rich re 98.7 2.5E-09 5.4E-14 110.1 -1.0 241 286-562 17-289 (319)
25 KOG0532 Leucine-rich repeat (L 98.6 2.9E-09 6.3E-14 108.7 -2.5 124 289-420 72-197 (722)
26 KOG4237 Extracellular matrix p 98.6 3.9E-09 8.4E-14 103.1 -2.8 251 295-560 70-355 (498)
27 KOG3207 Beta-tubulin folding c 98.6 1.8E-08 4E-13 99.9 1.2 214 335-636 116-335 (505)
28 KOG4341 F-box protein containi 98.5 4.8E-09 1E-13 103.3 -3.2 291 336-689 160-458 (483)
29 COG4886 Leucine-rich repeat (L 98.3 3.9E-07 8.4E-12 96.7 4.6 104 316-422 113-219 (394)
30 PF14580 LRR_9: Leucine-rich r 98.2 9.4E-07 2E-11 80.1 3.8 126 289-423 16-151 (175)
31 KOG2120 SCF ubiquitin ligase, 98.1 1E-07 2.2E-12 89.9 -4.2 62 502-563 286-350 (419)
32 COG4886 Leucine-rich repeat (L 98.1 1.7E-06 3.7E-11 91.8 4.2 180 332-562 108-288 (394)
33 KOG3207 Beta-tubulin folding c 98.1 1.3E-06 2.8E-11 87.1 2.6 130 268-399 122-257 (505)
34 KOG0532 Leucine-rich repeat (L 98.1 1.8E-07 3.8E-12 96.0 -3.7 181 328-561 86-270 (722)
35 KOG1909 Ran GTPase-activating 98.0 3.8E-07 8.2E-12 88.3 -3.5 257 336-637 26-308 (382)
36 PLN03150 hypothetical protein; 98.0 9.4E-06 2E-10 90.4 6.8 90 321-410 420-512 (623)
37 PF13855 LRR_8: Leucine rich r 98.0 4.9E-06 1.1E-10 61.5 3.0 58 340-399 1-60 (61)
38 KOG1259 Nischarin, modulator o 98.0 1.9E-06 4.2E-11 81.4 0.8 133 472-644 283-415 (490)
39 PF14580 LRR_9: Leucine-rich r 98.0 4E-06 8.7E-11 76.0 2.4 101 315-420 15-121 (175)
40 PRK04841 transcriptional regul 97.9 0.00027 5.8E-09 83.9 18.1 204 9-248 120-332 (903)
41 KOG1259 Nischarin, modulator o 97.9 2.6E-06 5.6E-11 80.6 0.1 207 332-568 206-415 (490)
42 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3.1E-10 53.9 3.7 40 340-381 1-40 (44)
43 PLN03150 hypothetical protein; 97.8 4.1E-05 9E-10 85.3 8.2 110 293-405 419-532 (623)
44 PRK15386 type III secretion pr 97.8 6.6E-05 1.4E-09 76.7 8.7 69 336-410 48-116 (426)
45 PRK15386 type III secretion pr 97.8 3.1E-05 6.7E-10 79.0 6.1 68 495-569 45-112 (426)
46 KOG4341 F-box protein containi 97.8 1.8E-06 3.9E-11 85.6 -3.5 304 292-655 138-456 (483)
47 PF13855 LRR_8: Leucine rich r 97.6 6.4E-05 1.4E-09 55.5 3.3 59 502-562 1-60 (61)
48 KOG1909 Ran GTPase-activating 97.6 9.4E-06 2E-10 78.9 -1.7 254 288-562 26-309 (382)
49 KOG2120 SCF ubiquitin ligase, 97.5 3.6E-06 7.8E-11 79.7 -5.0 135 500-662 232-374 (419)
50 PF12799 LRR_4: Leucine Rich r 97.4 0.00016 3.5E-09 48.8 3.0 39 364-404 1-39 (44)
51 KOG0531 Protein phosphatase 1, 97.1 0.00011 2.4E-09 78.2 0.3 104 315-423 91-197 (414)
52 KOG2982 Uncharacterized conser 97.0 0.00018 3.9E-09 68.5 0.3 62 497-559 219-287 (418)
53 KOG0531 Protein phosphatase 1, 96.9 0.00018 3.8E-09 76.6 -0.9 93 328-425 83-175 (414)
54 KOG3665 ZYG-1-like serine/thre 96.9 0.0006 1.3E-08 76.0 2.7 127 268-399 123-261 (699)
55 KOG4579 Leucine-rich repeat (L 96.8 0.0003 6.6E-09 59.1 0.3 81 316-398 50-133 (177)
56 KOG4579 Leucine-rich repeat (L 96.7 0.00015 3.3E-09 60.8 -2.7 89 334-425 47-136 (177)
57 COG5238 RNA1 Ran GTPase-activa 96.5 0.0013 2.8E-08 62.0 1.9 124 496-643 179-318 (388)
58 TIGR03015 pepcterm_ATPase puta 96.2 0.05 1.1E-06 54.2 11.7 111 8-120 121-242 (269)
59 KOG3665 ZYG-1-like serine/thre 96.2 0.0024 5.1E-08 71.4 2.2 126 291-420 121-258 (699)
60 KOG1859 Leucine-rich repeat pr 96.2 0.00071 1.5E-08 72.3 -2.0 82 335-422 182-264 (1096)
61 PRK06893 DNA replication initi 96.0 0.03 6.5E-07 54.1 8.6 99 12-117 93-204 (229)
62 KOG1947 Leucine rich repeat pr 96.0 0.0013 2.8E-08 71.9 -1.2 166 472-668 268-444 (482)
63 KOG1947 Leucine rich repeat pr 96.0 0.001 2.2E-08 72.8 -2.1 61 339-399 187-254 (482)
64 KOG2982 Uncharacterized conser 95.8 0.0022 4.8E-08 61.3 -0.3 68 526-615 197-266 (418)
65 PF00560 LRR_1: Leucine Rich R 95.7 0.0044 9.5E-08 34.6 0.9 21 341-362 1-21 (22)
66 PF05729 NACHT: NACHT domain 95.4 0.043 9.2E-07 49.9 6.9 72 8-81 79-162 (166)
67 COG3903 Predicted ATPase [Gene 95.4 0.0084 1.8E-07 60.6 2.0 171 2-179 80-258 (414)
68 KOG1859 Leucine-rich repeat pr 95.0 0.0024 5.2E-08 68.4 -3.0 104 287-399 182-290 (1096)
69 KOG2739 Leucine-rich acidic nu 94.9 0.017 3.8E-07 54.6 2.5 85 338-424 63-155 (260)
70 PRK00080 ruvB Holliday junctio 94.6 0.45 9.7E-06 48.9 12.2 157 40-221 151-310 (328)
71 TIGR00635 ruvB Holliday juncti 94.5 0.47 1E-05 48.2 12.2 157 40-221 130-289 (305)
72 PF00560 LRR_1: Leucine Rich R 94.5 0.017 3.6E-07 32.3 0.8 21 365-386 1-21 (22)
73 KOG2123 Uncharacterized conser 94.2 0.0072 1.6E-07 57.4 -1.7 58 315-374 37-98 (388)
74 PRK00411 cdc6 cell division co 94.1 3.4 7.4E-05 43.7 18.1 200 9-222 137-359 (394)
75 KOG3864 Uncharacterized conser 94.0 0.0036 7.9E-08 56.6 -3.8 39 625-663 149-188 (221)
76 KOG1644 U2-associated snRNP A' 93.9 0.062 1.3E-06 48.9 3.5 55 341-398 43-98 (233)
77 COG5238 RNA1 Ran GTPase-activa 93.7 0.038 8.3E-07 52.4 2.0 91 470-560 182-281 (388)
78 KOG3864 Uncharacterized conser 93.4 0.011 2.3E-07 53.7 -2.0 18 650-667 150-167 (221)
79 PF01637 Arch_ATPase: Archaeal 93.2 0.43 9.3E-06 46.1 8.8 103 9-115 117-233 (234)
80 KOG1644 U2-associated snRNP A' 93.2 0.1 2.2E-06 47.5 3.9 65 496-562 58-124 (233)
81 PF13504 LRR_7: Leucine rich r 92.9 0.058 1.3E-06 27.9 1.1 16 341-357 2-17 (17)
82 COG2909 MalT ATP-dependent tra 92.7 1.3 2.9E-05 49.5 12.0 203 9-248 128-338 (894)
83 KOG2739 Leucine-rich acidic nu 92.3 0.086 1.9E-06 50.1 2.2 81 337-421 40-125 (260)
84 KOG2123 Uncharacterized conser 92.2 0.018 3.9E-07 54.8 -2.4 66 336-404 37-104 (388)
85 PF13504 LRR_7: Leucine rich r 91.7 0.11 2.5E-06 26.8 1.3 17 627-644 1-17 (17)
86 PRK07471 DNA polymerase III su 91.6 1.1 2.3E-05 46.6 9.5 99 9-117 140-239 (365)
87 PRK09087 hypothetical protein; 91.0 3.1 6.6E-05 40.0 11.5 95 12-115 89-194 (226)
88 TIGR00678 holB DNA polymerase 91.0 1 2.2E-05 42.0 8.0 92 8-111 94-186 (188)
89 TIGR03420 DnaA_homol_Hda DnaA 90.4 1.6 3.5E-05 41.9 9.1 102 12-120 92-205 (226)
90 PF13173 AAA_14: AAA domain 89.5 0.66 1.4E-05 40.0 5.0 64 8-73 59-126 (128)
91 KOG0473 Leucine-rich repeat pr 88.6 0.03 6.5E-07 51.9 -4.1 80 317-398 40-121 (326)
92 PRK13342 recombination factor 88.6 5.3 0.00011 42.5 12.1 105 8-118 90-198 (413)
93 PRK09112 DNA polymerase III su 88.4 3.7 8E-05 42.4 10.3 102 8-117 139-241 (351)
94 TIGR02903 spore_lon_C ATP-depe 88.1 1.1 2.5E-05 49.9 6.9 113 2-120 284-399 (615)
95 PRK06645 DNA polymerase III su 87.8 4.3 9.4E-05 44.0 10.8 98 8-111 126-224 (507)
96 PRK05564 DNA polymerase III su 87.5 2.8 6.1E-05 42.7 8.9 98 9-116 92-190 (313)
97 KOG0473 Leucine-rich repeat pr 87.5 0.024 5.3E-07 52.4 -5.4 84 287-375 37-122 (326)
98 smart00370 LRR Leucine-rich re 86.9 0.51 1.1E-05 27.4 1.8 19 340-359 2-20 (26)
99 smart00369 LRR_TYP Leucine-ric 86.9 0.51 1.1E-05 27.4 1.8 19 340-359 2-20 (26)
100 TIGR02928 orc1/cdc6 family rep 85.9 47 0.001 34.5 18.6 201 9-222 128-351 (365)
101 PRK14963 DNA polymerase III su 84.9 6.9 0.00015 42.6 10.6 104 9-118 115-220 (504)
102 PRK14961 DNA polymerase III su 84.7 8.8 0.00019 40.0 11.0 98 9-112 118-216 (363)
103 KOG0989 Replication factor C, 84.5 3.6 7.8E-05 40.5 7.2 100 12-117 131-232 (346)
104 PRK12402 replication factor C 84.1 8.6 0.00019 39.6 10.7 100 9-114 124-224 (337)
105 smart00370 LRR Leucine-rich re 83.7 0.96 2.1E-05 26.2 1.9 21 363-384 1-21 (26)
106 smart00369 LRR_TYP Leucine-ric 83.7 0.96 2.1E-05 26.2 1.9 21 363-384 1-21 (26)
107 PRK08727 hypothetical protein; 83.5 7.7 0.00017 37.5 9.3 95 12-113 95-201 (233)
108 smart00367 LRR_CC Leucine-rich 83.2 0.58 1.3E-05 27.2 0.9 18 650-667 1-18 (26)
109 PRK05707 DNA polymerase III su 80.6 9.2 0.0002 39.1 9.0 97 10-116 106-203 (328)
110 PF13306 LRR_5: Leucine rich r 80.0 3.4 7.5E-05 35.3 5.0 32 526-559 33-66 (129)
111 PF13306 LRR_5: Leucine rich r 79.3 4.8 0.0001 34.4 5.8 101 287-396 7-111 (129)
112 COG3899 Predicted ATPase [Gene 78.8 21 0.00045 41.8 12.2 167 8-186 152-332 (849)
113 PRK07940 DNA polymerase III su 78.1 11 0.00024 39.5 8.9 97 9-116 116-213 (394)
114 PRK14959 DNA polymerase III su 78.1 14 0.00031 40.9 9.9 107 8-120 117-225 (624)
115 TIGR02397 dnaX_nterm DNA polym 78.0 21 0.00047 36.9 11.2 103 9-117 116-219 (355)
116 PRK08084 DNA replication initi 77.6 20 0.00044 34.6 10.0 96 13-115 100-208 (235)
117 PRK07003 DNA polymerase III su 77.5 15 0.00033 41.5 9.9 105 9-120 118-225 (830)
118 PRK07399 DNA polymerase III su 76.1 45 0.00098 33.8 12.4 99 8-115 122-220 (314)
119 PLN03025 replication factor C 75.0 11 0.00025 38.4 7.9 96 9-110 98-194 (319)
120 PRK08903 DnaA regulatory inact 73.4 25 0.00054 33.7 9.5 102 12-120 92-203 (227)
121 PRK14960 DNA polymerase III su 73.3 24 0.00051 39.4 10.0 98 9-113 117-216 (702)
122 PRK00440 rfc replication facto 73.3 21 0.00045 36.3 9.5 97 10-112 102-199 (319)
123 PRK05642 DNA replication initi 72.1 26 0.00057 33.8 9.2 99 13-118 100-210 (234)
124 PF00308 Bac_DnaA: Bacterial d 70.6 19 0.00041 34.3 7.8 96 12-114 99-206 (219)
125 PRK12323 DNA polymerase III su 70.5 23 0.0005 39.4 9.1 102 8-115 122-224 (700)
126 PRK06620 hypothetical protein; 68.9 68 0.0015 30.4 11.1 90 12-110 87-183 (214)
127 PRK08691 DNA polymerase III su 68.4 21 0.00046 40.1 8.4 98 9-113 118-217 (709)
128 PRK14955 DNA polymerase III su 68.2 28 0.00061 36.7 9.2 103 9-117 126-230 (397)
129 PRK14087 dnaA chromosomal repl 68.1 28 0.00061 37.4 9.2 104 11-119 207-322 (450)
130 PRK08451 DNA polymerase III su 68.0 38 0.00081 37.1 10.1 102 9-116 116-218 (535)
131 PRK14962 DNA polymerase III su 65.9 29 0.00062 37.5 8.7 107 8-120 115-223 (472)
132 smart00364 LRR_BAC Leucine-ric 65.6 3.7 8E-05 23.9 1.1 17 341-358 3-19 (26)
133 PRK14086 dnaA chromosomal repl 65.4 43 0.00093 37.2 9.9 72 13-86 380-463 (617)
134 PRK13341 recombination factor 65.4 31 0.00067 39.5 9.2 94 9-109 108-210 (725)
135 PRK14957 DNA polymerase III su 65.3 51 0.0011 36.2 10.6 106 8-119 117-224 (546)
136 PRK14949 DNA polymerase III su 64.8 36 0.00078 39.5 9.4 105 8-118 117-223 (944)
137 PTZ00112 origin recognition co 64.3 1.3E+02 0.0029 35.0 13.4 107 11-121 870-987 (1164)
138 PRK14956 DNA polymerase III su 64.2 29 0.00064 37.2 8.2 98 8-111 119-217 (484)
139 PRK08769 DNA polymerase III su 63.3 34 0.00074 34.7 8.2 97 9-117 112-209 (319)
140 PRK14964 DNA polymerase III su 62.9 50 0.0011 35.8 9.8 97 9-111 115-212 (491)
141 PRK14951 DNA polymerase III su 62.8 54 0.0012 36.7 10.3 100 9-114 123-223 (618)
142 PRK14950 DNA polymerase III su 61.6 67 0.0014 36.0 11.0 102 9-116 119-221 (585)
143 PRK14970 DNA polymerase III su 61.1 55 0.0012 34.1 9.8 103 9-117 107-211 (367)
144 PRK06090 DNA polymerase III su 59.4 1.5E+02 0.0033 30.1 12.1 95 9-117 107-202 (319)
145 PRK14954 DNA polymerase III su 59.4 71 0.0015 35.8 10.5 103 9-117 126-230 (620)
146 PRK06871 DNA polymerase III su 59.3 58 0.0013 33.2 9.1 93 9-112 106-199 (325)
147 PRK14971 DNA polymerase III su 58.3 55 0.0012 36.8 9.5 97 9-111 120-217 (614)
148 COG2256 MGS1 ATPase related to 57.6 38 0.00083 35.0 7.2 99 7-110 101-206 (436)
149 PRK06305 DNA polymerase III su 57.0 74 0.0016 34.2 9.9 103 9-117 120-224 (451)
150 PRK14953 DNA polymerase III su 56.7 1.1E+02 0.0025 33.1 11.3 101 8-114 117-218 (486)
151 PRK07994 DNA polymerase III su 56.5 55 0.0012 36.8 9.0 100 8-113 117-217 (647)
152 PRK05896 DNA polymerase III su 55.4 84 0.0018 34.9 10.0 103 10-118 119-223 (605)
153 PRK06964 DNA polymerase III su 54.2 89 0.0019 32.1 9.5 94 9-116 131-225 (342)
154 PRK07133 DNA polymerase III su 53.1 1.1E+02 0.0025 34.8 10.8 102 9-117 117-221 (725)
155 TIGR00362 DnaA chromosomal rep 52.7 75 0.0016 33.7 9.2 92 13-111 202-305 (405)
156 PRK04132 replication factor C 51.0 1.3E+02 0.0027 35.2 10.9 98 10-113 630-728 (846)
157 COG0593 DnaA ATPase involved i 50.9 67 0.0014 33.7 8.0 101 13-116 178-290 (408)
158 PRK09111 DNA polymerase III su 50.5 1.1E+02 0.0024 34.3 10.1 101 9-115 131-232 (598)
159 smart00365 LRR_SD22 Leucine-ri 50.0 12 0.00026 21.8 1.4 12 340-351 2-13 (26)
160 PF13516 LRR_6: Leucine Rich r 48.8 9.1 0.0002 21.5 0.9 11 341-351 3-13 (24)
161 PF14516 AAA_35: AAA-like doma 48.6 73 0.0016 32.7 8.0 53 62-123 194-246 (331)
162 PRK14958 DNA polymerase III su 48.2 95 0.0021 34.0 9.2 97 9-111 118-215 (509)
163 COG1373 Predicted ATPase (AAA+ 48.0 1.4E+02 0.003 31.5 10.1 64 10-77 94-162 (398)
164 TIGR01242 26Sp45 26S proteasom 47.8 39 0.00085 35.2 6.0 95 10-110 215-328 (364)
165 PRK14948 DNA polymerase III su 47.2 1.7E+02 0.0037 33.0 11.1 102 9-116 120-222 (620)
166 PRK07764 DNA polymerase III su 47.1 1.4E+02 0.0031 34.8 10.8 105 8-118 118-224 (824)
167 PRK06647 DNA polymerase III su 46.0 1.5E+02 0.0033 32.9 10.4 98 8-111 117-215 (563)
168 cd00009 AAA The AAA+ (ATPases 45.5 31 0.00067 29.7 4.3 44 8-51 82-131 (151)
169 PRK14969 DNA polymerase III su 45.3 98 0.0021 34.1 8.8 107 8-120 117-225 (527)
170 PRK07993 DNA polymerase III su 44.7 87 0.0019 32.1 7.8 93 9-113 107-201 (334)
171 CHL00181 cbbX CbbX; Provisiona 43.7 1.9E+02 0.004 29.0 9.8 74 12-85 124-212 (287)
172 PRK14088 dnaA chromosomal repl 42.7 1.2E+02 0.0027 32.4 8.9 92 11-109 195-298 (440)
173 PF02463 SMC_N: RecF/RecN/SMC 42.7 26 0.00057 33.3 3.6 47 11-57 159-206 (220)
174 PRK07132 DNA polymerase III su 42.5 1.7E+02 0.0038 29.4 9.3 97 9-117 89-186 (299)
175 KOG2227 Pre-initiation complex 41.3 52 0.0011 34.7 5.4 116 3-120 247-376 (529)
176 PRK00149 dnaA chromosomal repl 41.1 1.3E+02 0.0028 32.5 8.8 93 12-111 213-317 (450)
177 PRK14952 DNA polymerase III su 40.9 2.2E+02 0.0049 31.7 10.6 106 9-120 117-224 (584)
178 TIGR02880 cbbX_cfxQ probable R 40.7 1.8E+02 0.0038 29.1 9.2 74 11-84 122-210 (284)
179 PRK14965 DNA polymerase III su 37.1 1.9E+02 0.0042 32.3 9.6 106 9-120 118-225 (576)
180 PRK04195 replication factor C 36.0 6E+02 0.013 27.6 15.6 164 10-195 98-271 (482)
181 cd00561 CobA_CobO_BtuR ATP:cor 34.9 49 0.0011 29.6 3.7 42 10-51 95-139 (159)
182 PRK05563 DNA polymerase III su 33.8 3E+02 0.0065 30.6 10.3 98 8-111 117-215 (559)
183 PF06144 DNA_pol3_delta: DNA p 33.6 3.5E+02 0.0076 24.1 9.7 99 9-113 56-163 (172)
184 PHA02544 44 clamp loader, smal 32.9 1.1E+02 0.0025 30.9 6.6 71 9-80 99-171 (316)
185 smart00368 LRR_RI Leucine rich 32.6 29 0.00063 20.5 1.3 11 341-351 3-13 (28)
186 PF13177 DNA_pol3_delta2: DNA 31.9 53 0.0011 29.5 3.5 60 9-69 101-161 (162)
187 PRK12422 chromosomal replicati 31.8 1.8E+02 0.0038 31.3 7.9 72 12-85 204-287 (445)
188 PRK08058 DNA polymerase III su 30.8 2.3E+02 0.0049 29.1 8.3 73 8-81 108-181 (329)
189 PF02562 PhoH: PhoH-like prote 30.3 57 0.0012 30.6 3.5 40 11-53 120-159 (205)
190 KOG4062 6-O-methylguanine-DNA 30.2 69 0.0015 28.2 3.6 25 94-123 108-132 (178)
191 PF05496 RuvB_N: Holliday junc 25.0 1.6E+02 0.0035 28.1 5.4 97 10-111 101-216 (233)
192 KOG2035 Replication factor C, 23.5 2.7E+02 0.0058 27.5 6.6 78 30-116 147-229 (351)
193 PRK10536 hypothetical protein; 23.5 1.2E+02 0.0026 29.6 4.4 44 6-52 169-215 (262)
194 PRK08699 DNA polymerase III su 22.9 1.9E+02 0.004 29.6 5.9 71 10-81 113-184 (325)
195 TIGR02881 spore_V_K stage V sp 21.2 5.1E+02 0.011 25.3 8.6 73 12-84 107-193 (261)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-64 Score=561.56 Aligned_cols=579 Identities=28% Similarity=0.431 Sum_probs=407.6
Q ss_pred hhhhhcCCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchHHHHH-hCCCCccceeccCCChHhHHHHHHH
Q 005407 2 QLHESIEGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKVAIA-IGTTKSNIIPIELLSDEDCWSIFSQ 80 (698)
Q Consensus 2 ~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-~~~~~~~~~~v~~L~~~~a~~Lf~~ 80 (698)
+|.+.|++|||+|||||||+. .+|+.+..++|...+||||++|||++.||.. |++.. .++++.|..+|||.||++
T Consensus 253 ~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~--~~~v~~L~~~eaW~LF~~ 328 (889)
T KOG4658|consen 253 KLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDY--PIEVECLTPEEAWDLFQK 328 (889)
T ss_pred HHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCc--cccccccCccccHHHHHH
Confidence 477889999999999999986 4599999999999899999999999999998 77744 899999999999999999
Q ss_pred HhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcccCCHHHHHHHHhhhhcc----cccccccchhhHhhhcc
Q 005407 81 VALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLRFKRKIEEWQRVLESELWE----LEEVDKGLLGPLLLSYR 156 (698)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~----~~~~~~~i~~~l~~sy~ 156 (698)
.||..... ..+.+.++|++||++|+|+|||++++|+.|+.+++.++|+++.+...+. ..+.++.++.+++.|||
T Consensus 329 ~v~~~~~~--~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd 406 (889)
T KOG4658|consen 329 KVGPNTLG--SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYD 406 (889)
T ss_pred hhcccccc--ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHh
Confidence 99987442 2445899999999999999999999999999999999999999865443 23345789999999999
Q ss_pred CCChhHHHHHhhhcCCCCCCccCHHHHHHHHHhcCcccc-CCCccHHHHHHHHHHHHHhCCCcccccccCCCCeeEEEEE
Q 005407 157 DLPPPLKKCFLYCAIFPKDSMLEKDKLIRLWMAQDYLKV-KGREDMEVVGEEYFESLAMHSLFQDFERSEHDGRKIIRCK 235 (698)
Q Consensus 157 ~L~~~~k~~fl~~a~fp~~~~i~~~~Li~~wi~eg~~~~-~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~ 235 (698)
.||++.|.||+|||.||+++.|++++|+.+|+||||+.+ .++..+++.|..|+++|+.++|+...... +.. .+|+
T Consensus 407 ~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~--~~~k 482 (889)
T KOG4658|consen 407 NLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRK--ETVK 482 (889)
T ss_pred hhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cce--eEEE
Confidence 999999999999999999999999999999999999988 44688999999999999999999876543 222 3899
Q ss_pred echhHHHHHHHhcc-----cceeecccC-C---ccccCCCCcceEEEEEccCCCcccCCcccCCCCcceEEEecCccchh
Q 005407 236 MHDIVHDFSQFLTK-----TECSALDVN-K---SRLQLPCWKARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYK 306 (698)
Q Consensus 236 ~hdlv~~~~~~~~~-----~~~~~~~~~-~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 306 (698)
|||+||++|.+++. .++.+.... + ......+..+|+++.+.+..... ..-..+++|++|.+.++.. .
T Consensus 483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~---~~~~~~~~L~tLll~~n~~-~ 558 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI---AGSSENPKLRTLLLQRNSD-W 558 (889)
T ss_pred eeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc---cCCCCCCccceEEEeecch-h
Confidence 99999999999998 554333322 1 11233445789999988876332 2233566899999998753 2
Q ss_pred hhcccccccccCccceeeeCC---CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchh
Q 005407 307 RTIASSKLFDRLTCLRSIDGP---PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPER 383 (698)
Q Consensus 307 ~~~~~~~~~~~l~~L~~L~l~---~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~ 383 (698)
.......+|..++.||+||++ .+.++|++|+.|.+||||+++++. +..+|..+++|+.|.+||+..+..+..+|..
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccch
Confidence 233345668899999999999 778899999999999999999999 9999999999999999999998878888777
Q ss_pred hhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcch
Q 005407 384 IGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDND 463 (698)
Q Consensus 384 i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~ 463 (698)
+..|++||+|.+.... ...-...++.+.+|++|.......... ..+..+..+..++ ....
T Consensus 638 ~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~----~~~e~l~~~~~L~-~~~~-------------- 697 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSV----LLLEDLLGMTRLR-SLLQ-------------- 697 (889)
T ss_pred hhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchh----HhHhhhhhhHHHH-HHhH--------------
Confidence 7779999999886542 111112233334444443332222110 0111222222221 0000
Q ss_pred hhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchh-----cc-ccCccEEEEcC
Q 005407 464 DEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWM-----LS-LTKLRVLTLRH 537 (698)
Q Consensus 464 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~-----~~-l~~L~~L~L~~ 537 (698)
.+.+..+ ........+..+.+|+.|.+.++...++. ..|. .. ++++..+...+
T Consensus 698 -------------~l~~~~~------~~~~~~~~~~~l~~L~~L~i~~~~~~e~~--~~~~~~~~~~~~f~~l~~~~~~~ 756 (889)
T KOG4658|consen 698 -------------SLSIEGC------SKRTLISSLGSLGNLEELSILDCGISEIV--IEWEESLIVLLCFPNLSKVSILN 756 (889)
T ss_pred -------------hhhhccc------ccceeecccccccCcceEEEEcCCCchhh--cccccccchhhhHHHHHHHHhhc
Confidence 0000000 01122233344555666666555554321 1111 11 44566666666
Q ss_pred CCCCCcCCCCCCCCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCccccc-ccccccccccCcc
Q 005407 538 CFLCECLPCLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETL-IFLLMTNWEEWDD 616 (698)
Q Consensus 538 c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~ 616 (698)
|.....+.+..-.|+|++|.+.+|..++.+....-.... .......|+++..+ .+.+.+.++.+..
T Consensus 757 ~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~-------------l~~~i~~f~~~~~l~~~~~l~~l~~i~~ 823 (889)
T KOG4658|consen 757 CHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLE-------------LKELILPFNKLEGLRMLCSLGGLPQLYW 823 (889)
T ss_pred cccccccchhhccCcccEEEEecccccccCCCHHHHhhh-------------cccEEecccccccceeeecCCCCceeEe
Confidence 665555554445577777777777655554322110000 00012456666666 3555555544443
Q ss_pred cccCCCcCCCCccceeeeccCCCCCCCCccccCCCCcceEEEccC
Q 005407 617 CEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYS 661 (698)
Q Consensus 617 ~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~C 661 (698)
....++.|+.+.+..||++..+| .+..+.|.+|
T Consensus 824 -----~~l~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 824 -----LPLSFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred -----cccCccchhheehhcCcccccCc-------cccccceecc
Confidence 11256668888888898888777 3444566665
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6e-57 Score=530.19 Aligned_cols=575 Identities=22% Similarity=0.228 Sum_probs=402.6
Q ss_pred hhhhcCCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchHHHHHhCCCCccceeccCCChHhHHHHHHHHh
Q 005407 3 LHESIEGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVA 82 (698)
Q Consensus 3 l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a 82 (698)
++++|++||+||||||||+ ..+|+.+.+...|+++||+||||||+++++..+++.. +|+|+.|++++||+||+++|
T Consensus 289 ~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~--~~~v~~l~~~ea~~LF~~~A 364 (1153)
T PLN03210 289 MEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDH--IYEVCLPSNELALEMFCRSA 364 (1153)
T ss_pred HHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCe--EEEecCCCHHHHHHHHHHHh
Confidence 5788999999999999975 5789999988889999999999999999998877643 89999999999999999999
Q ss_pred hccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcccCCHHHHHHHHhhhhcccccccccchhhHhhhccCCCh-h
Q 005407 83 LSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLRFKRKIEEWQRVLESELWELEEVDKGLLGPLLLSYRDLPP-P 161 (698)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~ 161 (698)
|+...+ .+++.+++++||++|+|+||||+++|+.|+++ +.++|++++++... ..+..|..+|++||++|++ .
T Consensus 365 f~~~~~---~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~---~~~~~I~~~L~~SYd~L~~~~ 437 (1153)
T PLN03210 365 FKKNSP---PDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRN---GLDGKIEKTLRVSYDGLNNKK 437 (1153)
T ss_pred cCCCCC---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHh---CccHHHHHHHHHhhhccCccc
Confidence 987554 45688999999999999999999999999765 78999999987443 2346799999999999987 5
Q ss_pred HHHHHhhhcCCCCCCccCHHHHHHHHHhcCccccCCCccHHHHHHHHHHHHHhCCCcccccccCCCCeeEEEEEechhHH
Q 005407 162 LKKCFLYCAIFPKDSMLEKDKLIRLWMAQDYLKVKGREDMEVVGEEYFESLAMHSLFQDFERSEHDGRKIIRCKMHDIVH 241 (698)
Q Consensus 162 ~k~~fl~~a~fp~~~~i~~~~Li~~wi~eg~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~~hdlv~ 241 (698)
+|.||+++|+||.+..++ .+..|.+.+.+.. +..++.|++++|++.... +++|||+++
T Consensus 438 ~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~L~~ksLi~~~~~---------~~~MHdLl~ 495 (1153)
T PLN03210 438 DKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLKNLVDKSLIHVRED---------IVEMHSLLQ 495 (1153)
T ss_pred hhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHHHHhcCCEEEcCC---------eEEhhhHHH
Confidence 999999999999987553 3666777654432 123788999999976421 689999999
Q ss_pred HHHHHhcccceeecccCCcc------------ccCCCCcceEEEEEccCCCccc-CCcccCCCCcceEEEecCccchh--
Q 005407 242 DFSQFLTKTECSALDVNKSR------------LQLPCWKARHLMIMGEMSKEVP-FPSFVYNETKLRSLAVPRRLYYK-- 306 (698)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~-- 306 (698)
+||+.+++++.. ....... ......+++++.+......... ....+..+++|+.|.+.......
T Consensus 496 ~~~r~i~~~~~~-~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~ 574 (1153)
T PLN03210 496 EMGKEIVRAQSN-EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKK 574 (1153)
T ss_pred HHHHHHHHhhcC-CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccc
Confidence 999999876531 0111100 0112234555554333221111 22234556666666553321000
Q ss_pred -h------------------------hcccccccccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchh
Q 005407 307 -R------------------------TIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEA 359 (698)
Q Consensus 307 -~------------------------~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 359 (698)
. ...++..| ...+|+.|++. .+..+|.++..+.+|++|+|++|..++.+|.
T Consensus 575 ~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~- 652 (1153)
T PLN03210 575 EVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD- 652 (1153)
T ss_pred cceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-
Confidence 0 00011111 34566677766 5667777788888888888888776788875
Q ss_pred hhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccc
Q 005407 360 LCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNK 439 (698)
Q Consensus 360 ~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~ 439 (698)
++.+++|++|++++|..+..+|..++++++|+.|++++|..+..+|..+ ++++|+.|.+..+. .+..++.
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~---------~L~~~p~ 722 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS---------RLKSFPD 722 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC---------Ccccccc
Confidence 7888888888888888888888888888888888888888888888766 67788877665332 2222221
Q ss_pred -cccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCccc-HHH-hhccCCCCCCCceEEEEeecCCC
Q 005407 440 -LKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKG-HRV-VLECLQPPRSLEKLEILAYEGDT 516 (698)
Q Consensus 440 -L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~~~~~~~L~~L~l~~~~~~~ 516 (698)
..++. .+.+.... +.. ......+++|++|.+..+....... ... .......+++|+.|.+.++....
T Consensus 723 ~~~nL~-~L~L~~n~-i~~--------lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~ 792 (1153)
T PLN03210 723 ISTNIS-WLDLDETA-IEE--------FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV 792 (1153)
T ss_pred ccCCcC-eeecCCCc-ccc--------ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc
Confidence 11222 23322211 000 1111235566666665432100000 000 00111235789999998775432
Q ss_pred CCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcC
Q 005407 517 IPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTA 596 (698)
Q Consensus 517 ~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (698)
.+|.+++++++|+.|++++|..++.+|....+++|+.|++++|..++.++. .
T Consensus 793 --~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~--------------------------~ 844 (1153)
T PLN03210 793 --ELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD--------------------------I 844 (1153)
T ss_pred --ccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc--------------------------c
Confidence 238889999999999999999898888666899999999999998877653 2
Q ss_pred CCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCccccCCCCcceEEEccCcccccc
Q 005407 597 FPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSRHLNNR 667 (698)
Q Consensus 597 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~C~~l~~~ 667 (698)
.++|+.|++.+ +.++++|. .+..+++|+.|++++|++|+.+|..+..+++|+.+++++|++|+..
T Consensus 845 ~~nL~~L~Ls~-n~i~~iP~-----si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 845 STNISDLNLSR-TGIEEVPW-----WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccccCEeECCC-CCCccChH-----HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 35677777776 46666665 4457788888888888888888877777888888888888877643
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=4e-30 Score=260.22 Aligned_cols=190 Identities=41% Similarity=0.712 Sum_probs=148.7
Q ss_pred hhhhhcCCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchHHHHHhCCCCccceeccCCChHhHHHHHHHH
Q 005407 2 QLHESIEGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQV 81 (698)
Q Consensus 2 ~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~ 81 (698)
.+++.|+++|+||||||||+ ...|+.+...++.+..||+||||||++.++..+... ...|++++|+.+||++||.+.
T Consensus 93 ~l~~~L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~-~~~~~l~~L~~~ea~~L~~~~ 169 (287)
T PF00931_consen 93 QLRELLKDKRCLLVLDDVWD--EEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT-DKVIELEPLSEEEALELFKKR 169 (287)
T ss_dssp HHHHHHCCTSEEEEEEEE-S--HHHH-------HCHHSS-EEEEEESCGGGGTTHHSC-EEEEECSS--HHHHHHHHHHH
T ss_pred cchhhhccccceeeeeeecc--cccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence 46788999999999999986 468988888888888899999999999998776642 348999999999999999999
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcccCCHHHHHHHHhhhhcccc---cccccchhhHhhhccCC
Q 005407 82 ALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLRFKRKIEEWQRVLESELWELE---EVDKGLLGPLLLSYRDL 158 (698)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~---~~~~~i~~~l~~sy~~L 158 (698)
++.... ...+.+.+.+++|+++|+|+||||+++|++|+.+.+..+|+++++....... +....+..++.+||+.|
T Consensus 170 ~~~~~~--~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L 247 (287)
T PF00931_consen 170 AGRKES--ESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSL 247 (287)
T ss_dssp HTSHS------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSS
T ss_pred cccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcC
Confidence 987651 2235567789999999999999999999999777678899998876444432 23467999999999999
Q ss_pred ChhHHHHHhhhcCCCCCCccCHHHHHHHHHhcCccccC
Q 005407 159 PPPLKKCFLYCAIFPKDSMLEKDKLIRLWMAQDYLKVK 196 (698)
Q Consensus 159 ~~~~k~~fl~~a~fp~~~~i~~~~Li~~wi~eg~~~~~ 196 (698)
+++.|.||+|||+||+++.|+++.++++|+++||+...
T Consensus 248 ~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 248 PDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred CccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=5.8e-22 Score=234.60 Aligned_cols=276 Identities=21% Similarity=0.247 Sum_probs=170.4
Q ss_pred cceEEEEEccCCCcccCCccc-CCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CC-cccchhhcccccCc
Q 005407 268 KARHLMIMGEMSKEVPFPSFV-YNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PV-RKIPKGIKKLIHLR 343 (698)
Q Consensus 268 ~~~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~-~~lp~~i~~l~~L~ 343 (698)
.++.+.+.++... ...+..+ ..+++|+.|+++++......+ ...++.|++|+++ .+ ..+|..++.+.+|+
T Consensus 94 ~L~~L~Ls~n~~~-~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-----~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 94 YIQTINLSNNQLS-GPIPDDIFTTSSSLRYLNLSNNNFTGSIP-----RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred CCCEEECCCCccC-CcCChHHhccCCCCCEEECcCCccccccC-----ccccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 4555555554331 1123332 366777777777765433222 2346667777776 22 35677788888888
Q ss_pred eEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceecc
Q 005407 344 YLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVAS 423 (698)
Q Consensus 344 ~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~ 423 (698)
+|++++|.....+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|++..+.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 88888887445777778888888888888877666778888888888888888776666777778888888888776554
Q ss_pred CCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCC
Q 005407 424 RGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRS 503 (698)
Q Consensus 424 ~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 503 (698)
.... .-..+.++++|+ .+.+.... ........+..+++|+.|+++.+... ..++..+..+++
T Consensus 248 l~~~-----~p~~l~~l~~L~-~L~L~~n~-------l~~~~p~~l~~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~ 309 (968)
T PLN00113 248 LTGP-----IPSSLGNLKNLQ-YLFLYQNK-------LSGPIPPSIFSLQKLISLDLSDNSLS-----GEIPELVIQLQN 309 (968)
T ss_pred eccc-----cChhHhCCCCCC-EEECcCCe-------eeccCchhHhhccCcCEEECcCCeec-----cCCChhHcCCCC
Confidence 3211 111233333333 44433221 01112334556677788877766532 123444556677
Q ss_pred CceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCcceeeeCc
Q 005407 504 LEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMTSVKRLGN 569 (698)
Q Consensus 504 L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~~l~~l~~ 569 (698)
|+.|++.++...... |.++..+++|+.|++++|.....+| .++.+++|+.|++++|.-...++.
T Consensus 310 L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 310 LEILHLFSNNFTGKI--PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred CcEEECCCCccCCcC--ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 888887766554332 6677778888888888877665555 567777888888877653333433
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=2.2e-21 Score=229.68 Aligned_cols=355 Identities=19% Similarity=0.135 Sum_probs=174.0
Q ss_pred CcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CC-cccchhhcccccCceEeccccccccccchhhh
Q 005407 285 PSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PV-RKIPKGIKKLIHLRYLALGWNPWIKELPEALC 361 (698)
Q Consensus 285 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~-~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 361 (698)
+..+.++++|++|+++++..... .+..+.++++|+.|+++ .+ ..+|..++.+.+|++|++++|.....+|..++
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQ---IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCc---CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence 33444455555555554432211 12234455555555554 11 23455555555555555555552234555555
Q ss_pred cCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccc
Q 005407 362 ELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLK 441 (698)
Q Consensus 362 ~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~ 441 (698)
++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|+.|++..+...... ...+..+.
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~ 332 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI-----PVALTSLP 332 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC-----ChhHhcCC
Confidence 5555555555555533445555555555555555555444445555555555555554433222100 01111222
Q ss_pred cccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcc-------------------cHHHhhccCCCCC
Q 005407 442 HLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETK-------------------GHRVVLECLQPPR 502 (698)
Q Consensus 442 ~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-------------------~~~~~~~~~~~~~ 502 (698)
.|+ .+.+....- .......+..+++|+.|+++.+...... -...++..+..++
T Consensus 333 ~L~-~L~L~~n~l-------~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 404 (968)
T PLN00113 333 RLQ-VLQLWSNKF-------SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR 404 (968)
T ss_pred CCC-EEECcCCCC-------cCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC
Confidence 222 222221110 0111222344455555555544321100 0011222334455
Q ss_pred CCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCcceeeeCccccCCCcccccc
Q 005407 503 SLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQAR 581 (698)
Q Consensus 503 ~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~ 581 (698)
+|+.|++.++..... +|..+..+++|+.|++++|.....++ .+..+++|+.|++++|.-...+|... .........
T Consensus 405 ~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ 481 (968)
T PLN00113 405 SLRRVRLQDNSFSGE--LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLD 481 (968)
T ss_pred CCCEEECcCCEeeeE--CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEE
Confidence 666666655544322 15556666666666666665544444 34556777777777765443443321 111111111
Q ss_pred ccccccccccc-cCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCccccCCCCcceEEEcc
Q 005407 582 GDQAETASSII-RDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYY 660 (698)
Q Consensus 582 ~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~ 660 (698)
..........+ ....+++|+.|+++++.-...+|. ....+++|+.|+|++|.-...+|..+.++++|+.|++++
T Consensus 482 ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 556 (968)
T PLN00113 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD-----ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556 (968)
T ss_pred CcCCccCCccChhhhhhhccCEEECcCCcceeeCCh-----HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCC
Confidence 11111111111 124566777778877644444443 445788899999998765556777788889999999998
Q ss_pred Ccc
Q 005407 661 SRH 663 (698)
Q Consensus 661 C~~ 663 (698)
|..
T Consensus 557 N~l 559 (968)
T PLN00113 557 NQL 559 (968)
T ss_pred Ccc
Confidence 864
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=5.4e-23 Score=207.98 Aligned_cols=325 Identities=21% Similarity=0.206 Sum_probs=245.1
Q ss_pred CCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC----CCcccchhhcccccCceEeccccccccccchh
Q 005407 284 FPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP----PVRKIPKGIKKLIHLRYLALGWNPWIKELPEA 359 (698)
Q Consensus 284 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~----~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 359 (698)
.|..+..+.+|..|.+..+.... ..+-++.++.||.+.+. .-..+|..|.+|..|..|||+.|+ +++.|..
T Consensus 47 vPeEL~~lqkLEHLs~~HN~L~~----vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~ 121 (1255)
T KOG0444|consen 47 VPEELSRLQKLEHLSMAHNQLIS----VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN 121 (1255)
T ss_pred ChHHHHHHhhhhhhhhhhhhhHh----hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchh
Confidence 44455556666666665554222 22335667777777666 334688899999999999999999 9999999
Q ss_pred hhcCCCCcEeeccCCCCCcccchhh-hccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCccccccccccc
Q 005407 360 LCELCNLQTLDVSGCDNLKRLPERI-GELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLN 438 (698)
Q Consensus 360 ~~~l~~L~~L~l~~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~ 438 (698)
+.+.+++-+|+|++|. ++++|..+ -+|+.|-.|++++| .+..+|+.+..|..||+|.+.++.... + .+..|+
T Consensus 122 LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~h----f-QLrQLP 194 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNH----F-QLRQLP 194 (1255)
T ss_pred hhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhH----H-HHhcCc
Confidence 9999999999999977 99999874 78899999999888 788999999999999999887665432 2 456666
Q ss_pred ccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCC
Q 005407 439 KLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIP 518 (698)
Q Consensus 439 ~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 518 (698)
.++.|. .|++.+... .....+.++..+.+|..++++.++ ...+++++..+++|..|+++++....+
T Consensus 195 smtsL~-vLhms~TqR------Tl~N~Ptsld~l~NL~dvDlS~N~------Lp~vPecly~l~~LrrLNLS~N~iteL- 260 (1255)
T KOG0444|consen 195 SMTSLS-VLHMSNTQR------TLDNIPTSLDDLHNLRDVDLSENN------LPIVPECLYKLRNLRRLNLSGNKITEL- 260 (1255)
T ss_pred cchhhh-hhhcccccc------hhhcCCCchhhhhhhhhccccccC------CCcchHHHhhhhhhheeccCcCceeee-
Confidence 666555 455443321 334456677888899999998876 456678888888999999998887766
Q ss_pred CCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCc-ceeeeCccccCCCccccccccccccccccccCcCC
Q 005407 519 PTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMT-SVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAF 597 (698)
Q Consensus 519 ~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (698)
...++.-.+|++|+|+.|.....+..+..|+.|+.|.+.++. .++-+| ++++.+
T Consensus 261 --~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiP-----------------------SGIGKL 315 (1255)
T KOG0444|consen 261 --NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIP-----------------------SGIGKL 315 (1255)
T ss_pred --eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCc-----------------------cchhhh
Confidence 455566778999999998655444478889999998887633 112222 225677
Q ss_pred CcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCccccCCCCcceEEEccCccccc
Q 005407 598 PRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSRHLNN 666 (698)
Q Consensus 598 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~C~~l~~ 666 (698)
.+|+.+...+ ++|.-.|. ++..++.|+.|.+. |+.|..+|..+.-++.|++|++++.|+|.-
T Consensus 316 ~~Levf~aan-N~LElVPE-----glcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 316 IQLEVFHAAN-NKLELVPE-----GLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hhhHHHHhhc-cccccCch-----hhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccC
Confidence 8888888877 67777776 78889999999995 589999999998899999999999998753
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1.1e-19 Score=215.23 Aligned_cols=339 Identities=21% Similarity=0.119 Sum_probs=234.6
Q ss_pred cceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC---CCcccchhhcccccCce
Q 005407 268 KARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP---PVRKIPKGIKKLIHLRY 344 (698)
Q Consensus 268 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~---~~~~lp~~i~~l~~L~~ 344 (698)
+++.+.+..+.. ...|..+ ...+|+.|.+.++.... .+..+..+++|+.++++ .+..+|. ++.+++|++
T Consensus 590 ~Lr~L~~~~~~l--~~lP~~f-~~~~L~~L~L~~s~l~~----L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~ 661 (1153)
T PLN03210 590 KLRLLRWDKYPL--RCMPSNF-RPENLVKLQMQGSKLEK----LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLET 661 (1153)
T ss_pred ccEEEEecCCCC--CCCCCcC-CccCCcEEECcCccccc----cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccE
Confidence 445555544433 2233333 56788888888765332 33446788999999998 4667774 889999999
Q ss_pred EeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccC
Q 005407 345 LALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASR 424 (698)
Q Consensus 345 L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~ 424 (698)
|+|++|..+.++|.+++++++|+.|++++|..++.+|..+ ++++|+.|++++|..+..+|.. .++|+.|++..+..
T Consensus 662 L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i 737 (1153)
T PLN03210 662 LKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI 737 (1153)
T ss_pred EEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc
Confidence 9999999899999999999999999999999999999877 7999999999999888888854 35667776655544
Q ss_pred CCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCC
Q 005407 425 GKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSL 504 (698)
Q Consensus 425 ~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L 504 (698)
...+... .+++|. .|.+..+....-+..............++|+.|.++.+.. ...++..+..+++|
T Consensus 738 ~~lP~~~----~l~~L~----~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~-----l~~lP~si~~L~~L 804 (1153)
T PLN03210 738 EEFPSNL----RLENLD----ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS-----LVELPSSIQNLHKL 804 (1153)
T ss_pred ccccccc----cccccc----cccccccchhhccccccccchhhhhccccchheeCCCCCC-----ccccChhhhCCCCC
Confidence 3322221 122232 2222221100000000000111122346889999887642 23356667888999
Q ss_pred ceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceeeeCccccCCCccccccccc
Q 005407 505 EKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQ 584 (698)
Q Consensus 505 ~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~ 584 (698)
+.|++.+|..... +|..+ .+++|+.|++++|..+..+|.+ .++|+.|+|.++ .++.+|..
T Consensus 805 ~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n-~i~~iP~s-------------- 864 (1153)
T PLN03210 805 EHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRT-GIEEVPWW-------------- 864 (1153)
T ss_pred CEEECCCCCCcCe--eCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCC-CCccChHH--------------
Confidence 9999988754332 26655 6899999999999988877754 378999999884 47666643
Q ss_pred cccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCccc-------------cCCC
Q 005407 585 AETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYI-------------LGST 651 (698)
Q Consensus 585 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~-------------~~l~ 651 (698)
...+++|+.|++.+|++++.++. ....+++|+.|.+++|++|+.++... ..++
T Consensus 865 ---------i~~l~~L~~L~L~~C~~L~~l~~-----~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p 930 (1153)
T PLN03210 865 ---------IEKFSNLSFLDMNGCNNLQRVSL-----NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLP 930 (1153)
T ss_pred ---------HhcCCCCCEEECCCCCCcCccCc-----ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCC
Confidence 35799999999999999999886 45578999999999999998764311 1233
Q ss_pred CcceEEEccCcccc
Q 005407 652 SLDKLLIYYSRHLN 665 (698)
Q Consensus 652 ~L~~L~i~~C~~l~ 665 (698)
+...+.+.+|.+|.
T Consensus 931 ~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 931 STVCINFINCFNLD 944 (1153)
T ss_pred chhccccccccCCC
Confidence 44556778887765
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=1.6e-21 Score=197.48 Aligned_cols=320 Identities=23% Similarity=0.241 Sum_probs=241.1
Q ss_pred CcceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCce
Q 005407 267 WKARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRY 344 (698)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~ 344 (698)
.++.|+++.++.. ....+.+..++.||++.+..+...... .+..+.+++.|.+||++ .+..+|.++..-+++-+
T Consensus 55 qkLEHLs~~HN~L--~~vhGELs~Lp~LRsv~~R~N~LKnsG--iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQL--ISVHGELSDLPRLRSVIVRDNNLKNSG--IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred hhhhhhhhhhhhh--HhhhhhhccchhhHHHhhhccccccCC--CCchhcccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 3567777777665 445677788999999998887654433 34557789999999999 78999999999999999
Q ss_pred Eeccccccccccchh-hhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceecc
Q 005407 345 LALGWNPWIKELPEA-LCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVAS 423 (698)
Q Consensus 345 L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~ 423 (698)
|+|++|+ |..+|.+ +-+|+.|-.|||++|+ ++.+|+.+..|..|++|.+++|.....--..+..|++|++|.+.+..
T Consensus 131 LNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 131 LNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred EEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence 9999999 9999976 5689999999999987 99999999999999999999996543333445678888888876554
Q ss_pred CCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCC
Q 005407 424 RGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRS 503 (698)
Q Consensus 424 ~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 503 (698)
.... .-...+..+.+|..+ .++-+++ -..+..+-...+|+.|+++.+.++... .......+
T Consensus 209 RTl~-N~Ptsld~l~NL~dv--DlS~N~L----------p~vPecly~l~~LrrLNLS~N~iteL~------~~~~~W~~ 269 (1255)
T KOG0444|consen 209 RTLD-NIPTSLDDLHNLRDV--DLSENNL----------PIVPECLYKLRNLRRLNLSGNKITELN------MTEGEWEN 269 (1255)
T ss_pred chhh-cCCCchhhhhhhhhc--cccccCC----------CcchHHHhhhhhhheeccCcCceeeee------ccHHHHhh
Confidence 3211 011123333343322 1221222 223446677889999999988754322 22344568
Q ss_pred CceEEEEeecCCCCCCCCchhccccCccEEEEcCCCC-CCcCC-CCCCCCCcceeeccCCcceeeeCccccCCCcccccc
Q 005407 504 LEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFL-CECLP-CLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQAR 581 (698)
Q Consensus 504 L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~-~~~l~-~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~ 581 (698)
|++|+++.+....+ |..++.+++|+.|.+.+|.. .+.+| .+|.|.+|+++...++ +++-+|+..
T Consensus 270 lEtLNlSrNQLt~L---P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEgl---------- 335 (1255)
T KOG0444|consen 270 LETLNLSRNQLTVL---PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGL---------- 335 (1255)
T ss_pred hhhhccccchhccc---hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhh----------
Confidence 99999998877777 99999999999999988863 35677 7999999999999874 477777653
Q ss_pred ccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCC
Q 005407 582 GDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALP 644 (698)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp 644 (698)
-.++.|+.|.|.. +.|-.+|. ++..+|.|+.|++++.|+|..-|
T Consensus 336 -------------cRC~kL~kL~L~~-NrLiTLPe-----aIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 336 -------------CRCVKLQKLKLDH-NRLITLPE-----AIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred -------------hhhHHHHHhcccc-cceeechh-----hhhhcCCcceeeccCCcCccCCC
Confidence 3578899999876 67777776 77789999999999999998655
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=1.2e-19 Score=175.09 Aligned_cols=309 Identities=22% Similarity=0.195 Sum_probs=181.3
Q ss_pred cccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhh-cCCCCcEeeccCCCCCcccchhhhccccCC
Q 005407 315 FDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALC-ELCNLQTLDVSGCDNLKRLPERIGELINLR 391 (698)
Q Consensus 315 ~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~-~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~ 391 (698)
+..+..|..|++. .+..+| +|.++..|+.|.++.|. |+.+|.+.+ .|.+|.+||++.|. ++++|.++..|.+|.
T Consensus 202 lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLE 278 (565)
T ss_pred hcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhh
Confidence 4455555555554 455555 46666666666666666 666776665 78888888888876 888888888888888
Q ss_pred ceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCc-ch---hhcc
Q 005407 392 HLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDD-ND---DEKV 467 (698)
Q Consensus 392 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~-~~---~~~~ 467 (698)
.|++++| .+..+|..+|+| .|+.|.+..+....+....-.-..-.-|+.++....-.++......... .. ....
T Consensus 279 rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~ 356 (565)
T KOG0472|consen 279 RLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP 356 (565)
T ss_pred hhcccCC-ccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc
Confidence 8888877 677888888888 7887776655443332211011111123333321211122111110000 00 0111
Q ss_pred cccccccccceeeeeccCCCcc--------------------cHHHhhccCCCCCCCc-eEEEEeecCCCCCCCCchhcc
Q 005407 468 DLKSKMRLVELNLWFDRTTETK--------------------GHRVVLECLQPPRSLE-KLEILAYEGDTIPPTSNWMLS 526 (698)
Q Consensus 468 ~l~~~~~L~~L~l~~~~~~~~~--------------------~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~p~~~~~ 526 (698)
......+.+.|+++....+... ...+++..+..+..+. .+.+..+..... |..++.
T Consensus 357 ~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv---~~~l~~ 433 (565)
T KOG0472|consen 357 DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV---PLELSQ 433 (565)
T ss_pred chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc---hHHHHh
Confidence 1222334445554433222100 0111111111111111 112222222222 777889
Q ss_pred ccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCccccccc
Q 005407 527 LTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIF 605 (698)
Q Consensus 527 l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 605 (698)
+++|+.|+|++|.. ..+| .++.+..|+.|+++.. .+..+|...+ ....|+.+ +
T Consensus 434 l~kLt~L~L~NN~L-n~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y-----------------------~lq~lEtl-l 487 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLL-NDLPEEMGSLVRLQTLNLSFN-RFRMLPECLY-----------------------ELQTLETL-L 487 (565)
T ss_pred hhcceeeecccchh-hhcchhhhhhhhhheeccccc-ccccchHHHh-----------------------hHHHHHHH-H
Confidence 99999999999854 4455 7888999999999974 4666665321 22333443 3
Q ss_pred ccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCccccCCCCcceEEEccCc
Q 005407 606 LLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 662 (698)
Q Consensus 606 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~C~ 662 (698)
...+.+.+++. .++..|.+|..|++.+ +.++.+|+.+.++++|++|++.|.|
T Consensus 488 as~nqi~~vd~----~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 488 ASNNQIGSVDP----SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hccccccccCh----HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 44467777775 3677899999999988 6899999999999999999999987
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.69 E-value=7.5e-18 Score=170.05 Aligned_cols=291 Identities=22% Similarity=0.267 Sum_probs=154.9
Q ss_pred ccCccceeeeCC--CCcccchh-hcccccCceEeccccccccccc-hhhhcCCCCcEeeccCCCCCcccchhh-hccccC
Q 005407 316 DRLTCLRSIDGP--PVRKIPKG-IKKLIHLRYLALGWNPWIKELP-EALCELCNLQTLDVSGCDNLKRLPERI-GELINL 390 (698)
Q Consensus 316 ~~l~~L~~L~l~--~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~i-~~l~~L 390 (698)
.-+..||+||++ .+..+|.. +..=.++++|+|++|. |+.+- ..|..+.+|-+|.|+.|+ +..+|... .+|++|
T Consensus 146 ~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKL 223 (873)
T ss_pred HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcchh
Confidence 344445555555 33334322 3333455556665555 55442 234555555566665555 55555432 335666
Q ss_pred CceecCCccCCCcC-CcCCCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccc
Q 005407 391 RHLMNSRQDDSSYM-PRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDL 469 (698)
Q Consensus 391 ~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l 469 (698)
+.|++..| .++.+ --.+..|.+|+.|.+-.+.+....+| .+-.+.++.++ .|..+.+..+ ....+
T Consensus 224 ~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG--~Fy~l~kme~l--~L~~N~l~~v---------n~g~l 289 (873)
T KOG4194|consen 224 ESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG--AFYGLEKMEHL--NLETNRLQAV---------NEGWL 289 (873)
T ss_pred hhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCc--ceeeeccccee--ecccchhhhh---------hcccc
Confidence 66665554 22222 12344555555555444433332222 23333333333 1222222211 12235
Q ss_pred cccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC--CC
Q 005407 470 KSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP--CL 547 (698)
Q Consensus 470 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~--~l 547 (698)
.+++.|+.|+++++.+ .....+.++..+.|+.|+++.+....++ +..+..++.|+.|.|+.|. ++++. .+
T Consensus 290 fgLt~L~~L~lS~NaI-----~rih~d~WsftqkL~~LdLs~N~i~~l~--~~sf~~L~~Le~LnLs~Ns-i~~l~e~af 361 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAI-----QRIHIDSWSFTQKLKELDLSSNRITRLD--EGSFRVLSQLEELNLSHNS-IDHLAEGAF 361 (873)
T ss_pred cccchhhhhccchhhh-----heeecchhhhcccceeEeccccccccCC--hhHHHHHHHhhhhcccccc-hHHHHhhHH
Confidence 5666777777777653 2233455666777888888777777775 5666677777888887774 33332 34
Q ss_pred CCCCCcceeeccCCcceeee-CccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCC
Q 005407 548 GKLPCLETLTLEGMTSVKRL-GNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIM 626 (698)
Q Consensus 548 ~~L~~L~~L~L~~c~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 626 (698)
..+.+|+.|+|+.+. +... .+.... -.++++|+.|.+.+ ++++.++. ..+..+
T Consensus 362 ~~lssL~~LdLr~N~-ls~~IEDaa~~--------------------f~gl~~LrkL~l~g-Nqlk~I~k----rAfsgl 415 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNE-LSWCIEDAAVA--------------------FNGLPSLRKLRLTG-NQLKSIPK----RAFSGL 415 (873)
T ss_pred HHhhhhhhhcCcCCe-EEEEEecchhh--------------------hccchhhhheeecC-ceeeecch----hhhccC
Confidence 557777778777643 2222 111100 14588888888888 67888776 344568
Q ss_pred CccceeeeccCCCCCCC-CccccCCCCcceEEE
Q 005407 627 PRLRHLSICWSPELKAL-PDYILGSTSLDKLLI 658 (698)
Q Consensus 627 ~~L~~L~l~~c~~L~~l-p~~~~~l~~L~~L~i 658 (698)
++|++|++.+. -+.++ |..+.++ .|++|.+
T Consensus 416 ~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 416 EALEHLDLGDN-AIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred cccceecCCCC-cceeecccccccc-hhhhhhh
Confidence 88888888774 45555 3334433 5555543
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.68 E-value=1.4e-17 Score=168.06 Aligned_cols=343 Identities=20% Similarity=0.203 Sum_probs=220.0
Q ss_pred CCcceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccc-hhhcccccC
Q 005407 266 CWKARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIP-KGIKKLIHL 342 (698)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp-~~i~~l~~L 342 (698)
+...+.+.+.++..... .+..+.+.++|+.+.+..+.... .+.+.....+|..|++. .+..+. +.+..++.|
T Consensus 77 p~~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt~----IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELTR----IPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred ccceeeeeccccccccC-cHHHHhcCCcceeeeeccchhhh----cccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence 34455566666555322 34556777888887777765332 22222334456666665 344443 346777788
Q ss_pred ceEeccccccccccchh-hhcCCCCcEeeccCCCCCcccc-hhhhccccCCceecCCccCCCcCCcC-CCCCCCCCccCc
Q 005407 343 RYLALGWNPWIKELPEA-LCELCNLQTLDVSGCDNLKRLP-ERIGELINLRHLMNSRQDDSSYMPRG-MERLTSLRTLGS 419 (698)
Q Consensus 343 ~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~ 419 (698)
|.|||+.|. |.++|.. +..-.++++|+|++|+ ++.+- ..+..|.+|..|.+++| .+..+|.. +.+|.+|+.|++
T Consensus 152 rslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 152 RSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhhhch-hhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhc
Confidence 888888887 7777643 4455688888888877 55553 34677778888888877 55666644 455888888887
Q ss_pred eeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCC
Q 005407 420 FVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQ 499 (698)
Q Consensus 420 ~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 499 (698)
..+.+... ++. .+..|+.|+.++ +.-+++.+ .....+-.+.+++.|++..+.... .--.++-
T Consensus 229 nrN~iriv-e~l-tFqgL~Sl~nlk--lqrN~I~k---------L~DG~Fy~l~kme~l~L~~N~l~~-----vn~g~lf 290 (873)
T KOG4194|consen 229 NRNRIRIV-EGL-TFQGLPSLQNLK--LQRNDISK---------LDDGAFYGLEKMEHLNLETNRLQA-----VNEGWLF 290 (873)
T ss_pred cccceeee-hhh-hhcCchhhhhhh--hhhcCccc---------ccCcceeeecccceeecccchhhh-----hhccccc
Confidence 76655432 121 344555544432 22222222 122345667788888888776321 1234556
Q ss_pred CCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCcceeeeCccccCCCccc
Q 005407 500 PPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDD 578 (698)
Q Consensus 500 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~ 578 (698)
.+..|+.|+++.+.+..+. +.....+++|+.|+|++|...+.-+ ++..|..|+.|+|+.+. +.++.+..+
T Consensus 291 gLt~L~~L~lS~NaI~rih--~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af------ 361 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIH--IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAF------ 361 (873)
T ss_pred ccchhhhhccchhhhheee--cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHH------
Confidence 6788888888888887775 5555678899999998886554333 56678888999998743 666654332
Q ss_pred cccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCc-cccCCCCcceEE
Q 005407 579 QARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPD-YILGSTSLDKLL 657 (698)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~ 657 (698)
.++.+|+.|+|+.. .+..... .-......+|+|++|.+.+ ++|+++|. .+..+.+|+.|+
T Consensus 362 ----------------~~lssL~~LdLr~N-~ls~~IE-Daa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 362 ----------------VGLSSLHKLDLRSN-ELSWCIE-DAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred ----------------HHhhhhhhhcCcCC-eEEEEEe-cchhhhccchhhhheeecC-ceeeecchhhhccCcccceec
Confidence 56889999999873 3322211 0111234699999999999 68999985 466799999999
Q ss_pred EccCc
Q 005407 658 IYYSR 662 (698)
Q Consensus 658 i~~C~ 662 (698)
+.+.+
T Consensus 423 L~~Na 427 (873)
T KOG4194|consen 423 LGDNA 427 (873)
T ss_pred CCCCc
Confidence 98876
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.63 E-value=4.2e-18 Score=164.47 Aligned_cols=319 Identities=22% Similarity=0.232 Sum_probs=173.6
Q ss_pred CCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhh
Q 005407 284 FPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALC 361 (698)
Q Consensus 284 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 361 (698)
.|+.+....++..++++.+.... .+..+.++..|+.++++ .+..+|++++.+..|..|+..+|. +.++|.++.
T Consensus 83 lp~aig~l~~l~~l~vs~n~ls~----lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~ 157 (565)
T KOG0472|consen 83 LPAAIGELEALKSLNVSHNKLSE----LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMV 157 (565)
T ss_pred CCHHHHHHHHHHHhhcccchHhh----ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHH
Confidence 34444444444444444443111 22223344444444444 444455555555555555555554 555555555
Q ss_pred cCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccc
Q 005407 362 ELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLK 441 (698)
Q Consensus 362 ~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~ 441 (698)
++.+|..|++.++. +..+|+..-.|+.|++|+...| .+..+|+.+|.|.+|..|.+..+...
T Consensus 158 ~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~---------------- 219 (565)
T KOG0472|consen 158 NLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIR---------------- 219 (565)
T ss_pred HHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccc----------------
Confidence 55555555555544 4444444444555555555444 44555555555555554443322211
Q ss_pred cccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhh-ccCCCCCCCceEEEEeecCCCCCCC
Q 005407 442 HLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVL-ECLQPPRSLEKLEILAYEGDTIPPT 520 (698)
Q Consensus 442 ~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~ 520 (698)
....+.+|..|++|++..+. .+.++ +....++++..|++.++.....
T Consensus 220 -----------------------~lPef~gcs~L~Elh~g~N~------i~~lpae~~~~L~~l~vLDLRdNklke~--- 267 (565)
T KOG0472|consen 220 -----------------------FLPEFPGCSLLKELHVGENQ------IEMLPAEHLKHLNSLLVLDLRDNKLKEV--- 267 (565)
T ss_pred -----------------------cCCCCCccHHHHHHHhcccH------HHhhHHHHhcccccceeeeccccccccC---
Confidence 11134455556666555443 12222 2234567788888888877777
Q ss_pred CchhccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceeeeCccccCCCccc-----------------ccccc
Q 005407 521 SNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDD-----------------QARGD 583 (698)
Q Consensus 521 p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~-----------------~~~~~ 583 (698)
|..++.+++|.+|++++|......+.+|++ .|+.|.+.|.+ ++++-.+.+...... ++...
T Consensus 268 Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred chHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 899999999999999999766666689999 99999999877 555533322221110 00000
Q ss_pred ccc--cccccccCcCCCcccccccccccccccCccc--------------------------------------------
Q 005407 584 QAE--TASSIIRDTAFPRLETLIFLLMTNWEEWDDC-------------------------------------------- 617 (698)
Q Consensus 584 ~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-------------------------------------------- 617 (698)
... .....+....+.+.+.|.+++ .+++.+|.-
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc
Confidence 011 111112223344556666654 344444430
Q ss_pred -ccCCCcCCCCccceeeeccCCCCCCCCccccCCCCcceEEEccC
Q 005407 618 -EIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYS 661 (698)
Q Consensus 618 -~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~C 661 (698)
.....+..+++|.-|++++. -|..+|..+..+..|+.|+|+..
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred ccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc
Confidence 00011235888999999884 58889988888889999999864
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.52 E-value=1.3e-16 Score=169.89 Aligned_cols=97 Identities=34% Similarity=0.403 Sum_probs=54.1
Q ss_pred CccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceec
Q 005407 318 LTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMN 395 (698)
Q Consensus 318 l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l 395 (698)
..+|+.|+++ .+..+|..|..+.+|+.|+++.|. |.+.|.+++++.+|++|+|.++. +..+|.++..+++|++|++
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY-IRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eeeeEEeeccccccccCCchhhhHHHHhhcccchhh-HhhCchhhhhhhcchhheeccch-hhcCchhHHhhhccccccc
Confidence 3335555555 445555556666666666666555 66666656666666666665544 5666666666666666666
Q ss_pred CCccCCCcCCcCCCCCCCCCcc
Q 005407 396 SRQDDSSYMPRGMERLTSLRTL 417 (698)
Q Consensus 396 ~~~~~~~~~p~~i~~L~~L~~L 417 (698)
+.| ....+|.-+..++.+..+
T Consensus 122 S~N-~f~~~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 122 SFN-HFGPIPLVIEVLTAEEEL 142 (1081)
T ss_pred chh-ccCCCchhHHhhhHHHHH
Confidence 555 334445444444444333
No 14
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.41 E-value=1.3e-13 Score=155.41 Aligned_cols=312 Identities=23% Similarity=0.203 Sum_probs=189.6
Q ss_pred cCCCCcceEEEecCccchhhhcccccccccCccceeeeCC-CCcccchh-hcccccCceEeccccccccccchhhhcCCC
Q 005407 288 VYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP-PVRKIPKG-IKKLIHLRYLALGWNPWIKELPEALCELCN 365 (698)
Q Consensus 288 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~-~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~ 365 (698)
..+....|.+.+.++.......... -.++..|-+.... .+..++.. |..++.|++|||++|..+.+||.+|+.|.+
T Consensus 519 ~~~~~~~rr~s~~~~~~~~~~~~~~--~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEHIAGSSE--NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred ccchhheeEEEEeccchhhccCCCC--CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 3345666777776664433222111 1133333333322 15556554 778999999999999989999999999999
Q ss_pred CcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccC
Q 005407 366 LQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEG 445 (698)
Q Consensus 366 L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~ 445 (698)
||+|+++++. +..+|.++++|++|.+|++..+..+..+|..+..|++|++|.++...... +...+.++.+|.+|+
T Consensus 597 LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~---~~~~l~el~~Le~L~- 671 (889)
T KOG4658|consen 597 LRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN---DKLLLKELENLEHLE- 671 (889)
T ss_pred hhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc---chhhHHhhhcccchh-
Confidence 9999999977 99999999999999999999888777777667779999999887554111 222455555555554
Q ss_pred ceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhc
Q 005407 446 SLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWML 525 (698)
Q Consensus 446 ~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~ 525 (698)
.+.+.... ......+.....|.++ .+.+.+.++..... +..+.
T Consensus 672 ~ls~~~~s---------~~~~e~l~~~~~L~~~-------------------------~~~l~~~~~~~~~~---~~~~~ 714 (889)
T KOG4658|consen 672 NLSITISS---------VLLLEDLLGMTRLRSL-------------------------LQSLSIEGCSKRTL---ISSLG 714 (889)
T ss_pred hheeecch---------hHhHhhhhhhHHHHHH-------------------------hHhhhhccccccee---ecccc
Confidence 33332110 0000111111111111 11222222222222 55677
Q ss_pred cccCccEEEEcCCCCCCcCC-C-----CCC-CCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCC
Q 005407 526 SLTKLRVLTLRHCFLCECLP-C-----LGK-LPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFP 598 (698)
Q Consensus 526 ~l~~L~~L~L~~c~~~~~l~-~-----l~~-L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (698)
.+.+|+.|.+.+|...+... . ... +++|..+.+.+|..++.+.. ..-.|
T Consensus 715 ~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~------------------------~~f~~ 770 (889)
T KOG4658|consen 715 SLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW------------------------LLFAP 770 (889)
T ss_pred cccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch------------------------hhccC
Confidence 89999999999998764322 1 112 56777777777765555432 23578
Q ss_pred cccccccccccccccCcccc-----cCCCcCCCCcccee-eeccCCCCCCCCccccCCCCcceEEEccCcccccc
Q 005407 599 RLETLIFLLMTNWEEWDDCE-----IAGGKTIMPRLRHL-SICWSPELKALPDYILGSTSLDKLLIYYSRHLNNR 667 (698)
Q Consensus 599 ~L~~L~l~~~~~l~~~~~~~-----~~~~~~~~~~L~~L-~l~~c~~L~~lp~~~~~l~~L~~L~i~~C~~l~~~ 667 (698)
+|+.|.+..|+.+.++.... .......+.++..+ .+.+.+.+.++-..-...+.|+.+.+..||++...
T Consensus 771 ~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~ 845 (889)
T KOG4658|consen 771 HLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKL 845 (889)
T ss_pred cccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccC
Confidence 99999999998888776511 11112234455555 34444444433211112344999999999987644
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.37 E-value=2.4e-12 Score=141.98 Aligned_cols=115 Identities=18% Similarity=0.167 Sum_probs=68.4
Q ss_pred CCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceeeeCccccCCCcccccc
Q 005407 502 RSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQAR 581 (698)
Q Consensus 502 ~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~ 581 (698)
.+|+.|++.++....+ |.. ..+|+.|++++|.. ..+|.+ .++|+.|+++++. ++.+|.
T Consensus 342 ~~Lq~LdLS~N~Ls~L---P~l---p~~L~~L~Ls~N~L-~~LP~l--~~~L~~LdLs~N~-Lt~LP~------------ 399 (788)
T PRK15387 342 SGLQELSVSDNQLASL---PTL---PSELYKLWAYNNRL-TSLPAL--PSGLKELIVSGNR-LTSLPV------------ 399 (788)
T ss_pred cccceEecCCCccCCC---CCC---Ccccceehhhcccc-ccCccc--ccccceEEecCCc-ccCCCC------------
Confidence 4566777766665555 321 24566666666643 334432 2456777776643 444432
Q ss_pred ccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCccccCCCCcceEEEccC
Q 005407 582 GDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYS 661 (698)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~C 661 (698)
..++|+.|+++++ .++.+|. .+.+|+.|++++ ++++.+|..+.++++|+.|+++++
T Consensus 400 --------------l~s~L~~LdLS~N-~LssIP~--------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 400 --------------LPSELKELMVSGN-RLTSLPM--------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred --------------cccCCCEEEccCC-cCCCCCc--------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCC
Confidence 2346777777773 4565553 234667777776 357777777767777777777776
Q ss_pred c
Q 005407 662 R 662 (698)
Q Consensus 662 ~ 662 (698)
+
T Consensus 456 ~ 456 (788)
T PRK15387 456 P 456 (788)
T ss_pred C
Confidence 5
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=4.1e-12 Score=141.12 Aligned_cols=78 Identities=19% Similarity=0.327 Sum_probs=36.6
Q ss_pred ceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCc
Q 005407 321 LRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQ 398 (698)
Q Consensus 321 L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~ 398 (698)
|+.|++. .+..+|..+. .+|++|++++|. ++.+|..+. .+|+.|+|++|. +..+|..+. .+|+.|++++|
T Consensus 201 L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 201 ITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred CcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECcCC
Confidence 3444443 4444554433 355555555554 555554332 245555555544 445554442 34555555544
Q ss_pred cCCCcCCcC
Q 005407 399 DDSSYMPRG 407 (698)
Q Consensus 399 ~~~~~~p~~ 407 (698)
.+..+|..
T Consensus 273 -~L~~LP~~ 280 (754)
T PRK15370 273 -KISCLPEN 280 (754)
T ss_pred -ccCccccc
Confidence 33344443
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.28 E-value=2.1e-13 Score=145.76 Aligned_cols=83 Identities=31% Similarity=0.456 Sum_probs=57.5
Q ss_pred ccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCc
Q 005407 340 IHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGS 419 (698)
Q Consensus 340 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 419 (698)
.+|++++++.+. +..+|+.++.+.+|+.+++.+|. +..+|..+..+++|+.|.+..| .+..+|+..+.+++|++|++
T Consensus 241 ~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNN-LSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhh-hhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeee
Confidence 457777777776 77777777777777777777765 6777777777777777777666 56667777777777777766
Q ss_pred eeccCC
Q 005407 420 FVASRG 425 (698)
Q Consensus 420 ~~~~~~ 425 (698)
..+...
T Consensus 318 ~~N~L~ 323 (1081)
T KOG0618|consen 318 QSNNLP 323 (1081)
T ss_pred hhcccc
Confidence 554443
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=1.5e-13 Score=117.77 Aligned_cols=82 Identities=27% Similarity=0.436 Sum_probs=64.8
Q ss_pred hcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCC
Q 005407 336 IKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLR 415 (698)
Q Consensus 336 i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 415 (698)
+..+.+...|-|+.|+ +..+|+.|..|.+|+.|++.+|. ++.+|..|..|++|++|+++-| .+..+|.++|.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhh
Confidence 4456667777788888 88888888888888888888876 8888888888888888888655 6777888888888888
Q ss_pred ccCce
Q 005407 416 TLGSF 420 (698)
Q Consensus 416 ~L~~~ 420 (698)
.|++.
T Consensus 106 vldlt 110 (264)
T KOG0617|consen 106 VLDLT 110 (264)
T ss_pred hhhcc
Confidence 88664
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.19 E-value=8.4e-13 Score=113.25 Aligned_cols=133 Identities=22% Similarity=0.310 Sum_probs=105.4
Q ss_pred cccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcC
Q 005407 286 SFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCEL 363 (698)
Q Consensus 286 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l 363 (698)
..+++++++..|.++.+.... .+..+..+.+|.+|++. .++.+|.++++++.|+.|++.-|. +..+|..|+.+
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~----vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~ 101 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTV----VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSF 101 (264)
T ss_pred ccccchhhhhhhhcccCceee----cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCC
Confidence 345567777778888775332 33447778888888887 788899999999999999998888 88899999999
Q ss_pred CCCcEeeccCCC-CCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccC
Q 005407 364 CNLQTLDVSGCD-NLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASR 424 (698)
Q Consensus 364 ~~L~~L~l~~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~ 424 (698)
+.|+.|||.+|. +-..+|..+..|+.|+.|++++| ....+|..+|++++||.|.+..+..
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCch
Confidence 999999998765 23468888888899999999887 6678888999999999887665443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.19 E-value=7.5e-11 Score=131.16 Aligned_cols=99 Identities=23% Similarity=0.306 Sum_probs=50.3
Q ss_pred CcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEe
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTL 369 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L 369 (698)
++++.|+++++....... ..+ .+|+.|+++ .+..+|..+. .+|+.|+|++|. +.++|..+. .+|++|
T Consensus 199 ~~L~~L~Ls~N~LtsLP~---~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 199 EQITTLILDNNELKSLPE---NLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSL 267 (754)
T ss_pred cCCcEEEecCCCCCcCCh---hhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEE
Confidence 345666666554332111 111 245555554 4455555443 256666666665 556665443 356666
Q ss_pred eccCCCCCcccchhhhccccCCceecCCccCCCcCC
Q 005407 370 DVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMP 405 (698)
Q Consensus 370 ~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p 405 (698)
++++|. +..+|..+. .+|+.|++++| .+..+|
T Consensus 268 ~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP 299 (754)
T PRK15370 268 DLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLP 299 (754)
T ss_pred ECcCCc-cCccccccC--CCCcEEECCCC-ccccCc
Confidence 666543 555655443 35666666655 333444
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.15 E-value=4.2e-10 Score=124.47 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=74.5
Q ss_pred cccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCc
Q 005407 474 RLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCL 553 (698)
Q Consensus 474 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L 553 (698)
+|+.|+++.+.+.. ++. .+++|+.|.+.++....+ |.. ..+|+.|++++|... .+|.. .++|
T Consensus 343 ~Lq~LdLS~N~Ls~------LP~---lp~~L~~L~Ls~N~L~~L---P~l---~~~L~~LdLs~N~Lt-~LP~l--~s~L 404 (788)
T PRK15387 343 GLQELSVSDNQLAS------LPT---LPSELYKLWAYNNRLTSL---PAL---PSGLKELIVSGNRLT-SLPVL--PSEL 404 (788)
T ss_pred ccceEecCCCccCC------CCC---CCcccceehhhccccccC---ccc---ccccceEEecCCccc-CCCCc--ccCC
Confidence 56777777665321 111 245778888877766655 442 357888999888544 45543 3678
Q ss_pred ceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceee
Q 005407 554 ETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLS 633 (698)
Q Consensus 554 ~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 633 (698)
+.|+++++. ++.+|. .+.+|+.|++++ +.++.+|. .+..+++|+.|+
T Consensus 405 ~~LdLS~N~-LssIP~--------------------------l~~~L~~L~Ls~-NqLt~LP~-----sl~~L~~L~~Ld 451 (788)
T PRK15387 405 KELMVSGNR-LTSLPM--------------------------LPSGLLSLSVYR-NQLTRLPE-----SLIHLSSETTVN 451 (788)
T ss_pred CEEEccCCc-CCCCCc--------------------------chhhhhhhhhcc-CcccccCh-----HHhhccCCCeEE
Confidence 888888864 655542 234677788877 56777775 445788888899
Q ss_pred eccCC
Q 005407 634 ICWSP 638 (698)
Q Consensus 634 l~~c~ 638 (698)
+++++
T Consensus 452 Ls~N~ 456 (788)
T PRK15387 452 LEGNP 456 (788)
T ss_pred CCCCC
Confidence 98864
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.98 E-value=3e-11 Score=117.46 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=57.3
Q ss_pred ccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC--CCCCCCCcceeeccCCcceeeeCcc
Q 005407 496 ECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP--CLGKLPCLETLTLEGMTSVKRLGNE 570 (698)
Q Consensus 496 ~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~--~l~~L~~L~~L~L~~c~~l~~l~~~ 570 (698)
.++..+++|++|+++++....+. +.|+..+..++.|.|..|. ++.+. .+..+..|+.|+|+++. ++.+...
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~--~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~ 340 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIE--DGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPG 340 (498)
T ss_pred HHHhhcccceEeccCCCccchhh--hhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCe-eEEEecc
Confidence 34677899999999999988887 7899999999999999985 34343 57789999999999954 7777543
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.86 E-value=8.5e-11 Score=121.11 Aligned_cols=89 Identities=22% Similarity=0.204 Sum_probs=41.8
Q ss_pred ccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCC--CCCCchhccccCccEEEEcCCCCCCc----C-C
Q 005407 473 MRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTI--PPTSNWMLSLTKLRVLTLRHCFLCEC----L-P 545 (698)
Q Consensus 473 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~p~~~~~l~~L~~L~L~~c~~~~~----l-~ 545 (698)
++|+.|+++.+.... .....+...+...++|+.|++.++..... ..++..+..+++|+.|++++|..... + .
T Consensus 137 ~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 215 (319)
T cd00116 137 PALEKLVLGRNRLEG-ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE 215 (319)
T ss_pred CCceEEEcCCCcCCc-hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence 345555555544322 11222333444445566666655443310 00012223345677777777653311 1 1
Q ss_pred CCCCCCCcceeeccCCc
Q 005407 546 CLGKLPCLETLTLEGMT 562 (698)
Q Consensus 546 ~l~~L~~L~~L~L~~c~ 562 (698)
.+..+++|++|++++|.
T Consensus 216 ~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 216 TLASLKSLEVLNLGDNN 232 (319)
T ss_pred HhcccCCCCEEecCCCc
Confidence 34456677777777654
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.68 E-value=2.5e-09 Score=110.13 Aligned_cols=241 Identities=19% Similarity=0.137 Sum_probs=128.4
Q ss_pred cccCCCCcceEEEecCccchhhh-cccccccccCccceeeeCCC--Cc-------ccchhhcccccCceEeccccccccc
Q 005407 286 SFVYNETKLRSLAVPRRLYYKRT-IASSKLFDRLTCLRSIDGPP--VR-------KIPKGIKKLIHLRYLALGWNPWIKE 355 (698)
Q Consensus 286 ~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~--~~-------~lp~~i~~l~~L~~L~L~~~~~l~~ 355 (698)
..+....+++.+.+.++...... ......+...+.++.+++.. +. .++..+..+.+|++|++++|.....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 33445556778888777643221 11223344555566666551 11 1234456677777777777763224
Q ss_pred cchhhhcCCC---CcEeeccCCCCC----cccchhhhcc-ccCCceecCCccCCC----cCCcCCCCCCCCCccCceecc
Q 005407 356 LPEALCELCN---LQTLDVSGCDNL----KRLPERIGEL-INLRHLMNSRQDDSS----YMPRGMERLTSLRTLGSFVAS 423 (698)
Q Consensus 356 lp~~~~~l~~---L~~L~l~~~~~l----~~lp~~i~~l-~~L~~L~l~~~~~~~----~~p~~i~~L~~L~~L~~~~~~ 423 (698)
.+..+..+.+ |++|++++|... ..+...+..+ ++|+.|++++|.... .++..+..+++|++|++..+.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 4444555544 777777777622 1233344555 677777777774321 122223334444444332111
Q ss_pred CCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCC
Q 005407 424 RGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRS 503 (698)
Q Consensus 424 ~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 503 (698)
.... ........+...++|+.|+++.+.... .....+...+..+++
T Consensus 177 l~~~---------------------------------~~~~l~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~~~~~~~ 222 (319)
T cd00116 177 IGDA---------------------------------GIRALAEGLKANCNLEVLDLNNNGLTD-EGASALAETLASLKS 222 (319)
T ss_pred CchH---------------------------------HHHHHHHHHHhCCCCCEEeccCCccCh-HHHHHHHHHhcccCC
Confidence 1100 000111123334577788887765432 223345556667788
Q ss_pred CceEEEEeecCCCCCCCCchhc-c----ccCccEEEEcCCCCCC----cC-CCCCCCCCcceeeccCCc
Q 005407 504 LEKLEILAYEGDTIPPTSNWML-S----LTKLRVLTLRHCFLCE----CL-PCLGKLPCLETLTLEGMT 562 (698)
Q Consensus 504 L~~L~l~~~~~~~~~~~p~~~~-~----l~~L~~L~L~~c~~~~----~l-~~l~~L~~L~~L~L~~c~ 562 (698)
|+.|++.++...... +..+. . .++|++|++++|.... .+ ..+..+++|++++++++.
T Consensus 223 L~~L~ls~n~l~~~~--~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 223 LEVLNLGDNNLTDAG--AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCEEecCCCcCchHH--HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 999999887654210 11221 1 3789999999986541 11 134556889999998754
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=2.9e-09 Score=108.71 Aligned_cols=124 Identities=33% Similarity=0.424 Sum_probs=83.0
Q ss_pred CCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCC
Q 005407 289 YNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNL 366 (698)
Q Consensus 289 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L 366 (698)
.....-...+++.+.+... +.-+..+-.|..+.+. .+..+|..++.+..|.||+|+.|+ +..+|..++.|+ |
T Consensus 72 ~~ltdt~~aDlsrNR~~el----p~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-L 145 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSEL----PEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-L 145 (722)
T ss_pred ccccchhhhhccccccccC----chHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-c
Confidence 3344444555555543322 2223333344433333 667778888888888888888888 888888777664 7
Q ss_pred cEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCce
Q 005407 367 QTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSF 420 (698)
Q Consensus 367 ~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 420 (698)
+.|.+++|. ++.+|..|+.+..|.+|+.+.| .+..+|..++.+++|+.|...
T Consensus 146 kvli~sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 146 KVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred eeEEEecCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHh
Confidence 888888765 8888888887788888888777 666777777777777777544
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.58 E-value=3.9e-09 Score=103.08 Aligned_cols=251 Identities=21% Similarity=0.178 Sum_probs=131.6
Q ss_pred eEEEecCccchhhhcccccccccCccceeeeCC--CCccc-chhhcccccCceEeccccccccccchh-hhcCCCCcEee
Q 005407 295 RSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKI-PKGIKKLIHLRYLALGWNPWIKELPEA-LCELCNLQTLD 370 (698)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~ 370 (698)
..+.+..+.+.. ..+..|+.++.||.+|++ .++.+ |+.|..+..|-.|-+-++..|+++|.. |++|..|+.|.
T Consensus 70 veirLdqN~I~~---iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 70 VEIRLDQNQISS---IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred eEEEeccCCccc---CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 444455443322 233556666677777766 45554 455666666666665553337777653 66677777777
Q ss_pred ccCCCCCcccchhhhccccCCceecCCccCCCcCCc-CCCCCCCCCccCceeccCCCCcccccccccccc----------
Q 005407 371 VSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPR-GMERLTSLRTLGSFVASRGKSSKACSRLKSLNK---------- 439 (698)
Q Consensus 371 l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~---------- 439 (698)
+.-|+.-......+..|++|..|.+.+| ....++. .+..+..++++....+.... .| .++.+..
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~ic---dC-nL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFIC---DC-NLPWLADDLAMNPIETS 221 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccc---cc-ccchhhhHHhhchhhcc
Confidence 7666522333344566677776666665 4444554 45555555555443322110 11 1111100
Q ss_pred ---------ccccc-CceeEc----cccCcCC---CC--CcchhhcccccccccccceeeeeccCCCcccHHHhhccCCC
Q 005407 440 ---------LKHLE-GSLTLR----RLGNERD---LG--DDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQP 500 (698)
Q Consensus 440 ---------L~~L~-~~l~i~----~l~~~~~---~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 500 (698)
+..-| +...-. ..+.... .. .........+..+++|++|+++.+.+.. .-..++..
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-----i~~~aFe~ 296 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-----IEDGAFEG 296 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-----hhhhhhcc
Confidence 00000 000000 0000000 00 0111122347788899999999887532 22344555
Q ss_pred CCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccC
Q 005407 501 PRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEG 560 (698)
Q Consensus 501 ~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~ 560 (698)
...++.|.+..+....+. ...+..+.+|+.|+|.+|......| .+..+..|..|+|-+
T Consensus 297 ~a~l~eL~L~~N~l~~v~--~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 297 AAELQELYLTRNKLEFVS--SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred hhhhhhhhcCcchHHHHH--HHhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence 667777777766654442 2334567888888888887665555 566677777777754
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.8e-08 Score=99.87 Aligned_cols=214 Identities=23% Similarity=0.162 Sum_probs=133.9
Q ss_pred hhcccccCceEeccccccccccch--hhhcCCCCcEeeccCCC--CCcccchhhhccccCCceecCCccCCCcCCcCCCC
Q 005407 335 GIKKLIHLRYLALGWNPWIKELPE--ALCELCNLQTLDVSGCD--NLKRLPERIGELINLRHLMNSRQDDSSYMPRGMER 410 (698)
Q Consensus 335 ~i~~l~~L~~L~L~~~~~l~~lp~--~~~~l~~L~~L~l~~~~--~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~ 410 (698)
.=+++.+|+...|+++. +...+. ....|++++.|||+.|- ++..+-.-...|++|+.|+++.|.. ...-++
T Consensus 116 kQsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl-~~~~~s--- 190 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL-SNFISS--- 190 (505)
T ss_pred HhhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc-cCCccc---
Confidence 34567888999999888 777663 57788999999998864 2223334456788888888887732 111000
Q ss_pred CCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCccc
Q 005407 411 LTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKG 490 (698)
Q Consensus 411 L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 490 (698)
... ...++|+.|.++.|+. +
T Consensus 191 -----------------------~~~---------------------------------~~l~~lK~L~l~~CGl----s 210 (505)
T KOG3207|consen 191 -----------------------NTT---------------------------------LLLSHLKQLVLNSCGL----S 210 (505)
T ss_pred -----------------------cch---------------------------------hhhhhhheEEeccCCC----C
Confidence 000 0122344555555553 2
Q ss_pred HHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCc--CCCCCCCCCcceeeccCCcceeeeC
Q 005407 491 HRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCEC--LPCLGKLPCLETLTLEGMTSVKRLG 568 (698)
Q Consensus 491 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~--l~~l~~L~~L~~L~L~~c~~l~~l~ 568 (698)
...+...+..+|+|+.|.+..+....+. -..-..+..|+.|+|++|..... .+..+.||.|..|+++.|. +.++.
T Consensus 211 ~k~V~~~~~~fPsl~~L~L~~N~~~~~~--~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~ 287 (505)
T KOG3207|consen 211 WKDVQWILLTFPSLEVLYLEANEIILIK--ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIA 287 (505)
T ss_pred HHHHHHHHHhCCcHHHhhhhccccccee--cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhc
Confidence 3344555566788888888777432221 12223577899999999987653 3578899999999998754 44442
Q ss_pred ccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeecc
Q 005407 569 NEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICW 636 (698)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 636 (698)
.--. .+..-...||+|++|.+.. +++.+|+... ....+++|+.|.+..
T Consensus 288 ~~d~----------------~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~---~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 288 EPDV----------------ESLDKTHTFPKLEYLNISE-NNIRDWRSLN---HLRTLENLKHLRITL 335 (505)
T ss_pred CCCc----------------cchhhhcccccceeeeccc-Cccccccccc---hhhccchhhhhhccc
Confidence 1110 0011136799999999988 5777777532 344678888887654
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.54 E-value=4.8e-09 Score=103.34 Aligned_cols=291 Identities=16% Similarity=0.106 Sum_probs=157.6
Q ss_pred hcccccCceEeccccccccc--cchhhhcCCCCcEeeccCCCCCcccch--hhhccccCCceecCCccCCCcCCcCCCCC
Q 005407 336 IKKLIHLRYLALGWNPWIKE--LPEALCELCNLQTLDVSGCDNLKRLPE--RIGELINLRHLMNSRQDDSSYMPRGMERL 411 (698)
Q Consensus 336 i~~l~~L~~L~L~~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~i~~L 411 (698)
-..+++++.|++.+|..+++ +-.--.++.+|++|++..|.+++..-- -...+++|.+|+++.|+.+..
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~-------- 231 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG-------- 231 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc--------
Confidence 34677788888888875552 222234677888888888877664321 234677888888887754433
Q ss_pred CCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccH
Q 005407 412 TSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGH 491 (698)
Q Consensus 412 ~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 491 (698)
.+++.+ ..++ ..+..+ ...++... ..+.....-..+..+.++++..|. ..+.
T Consensus 232 ~gv~~~----------~rG~------~~l~~~----~~kGC~e~-----~le~l~~~~~~~~~i~~lnl~~c~---~lTD 283 (483)
T KOG4341|consen 232 NGVQAL----------QRGC------KELEKL----SLKGCLEL-----ELEALLKAAAYCLEILKLNLQHCN---QLTD 283 (483)
T ss_pred CcchHH----------hccc------hhhhhh----hhcccccc-----cHHHHHHHhccChHhhccchhhhc---cccc
Confidence 111111 1122 111111 11111110 011111111223334444444443 1223
Q ss_pred HHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC--CC-CCCCCcceeeccCCcceeeeC
Q 005407 492 RVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP--CL-GKLPCLETLTLEGMTSVKRLG 568 (698)
Q Consensus 492 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~--~l-~~L~~L~~L~L~~c~~l~~l~ 568 (698)
+.+...-.....|+.|...++....-..+-.-.....+|+.|-+.+|......- .+ .+.+.|+.+++.+|.....-
T Consensus 284 ~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~- 362 (483)
T KOG4341|consen 284 EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG- 362 (483)
T ss_pred hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-
Confidence 334444445566777777665542211111112256788888888887554332 22 24677777777776533222
Q ss_pred ccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCC-Cccc
Q 005407 569 NEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKAL-PDYI 647 (698)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l-p~~~ 647 (698)
.... ....+|.|+.|.++.|...+.-.......+...+..|..+++++||.+..- -...
T Consensus 363 -tL~s-------------------ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l 422 (483)
T KOG4341|consen 363 -TLAS-------------------LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL 422 (483)
T ss_pred -hHhh-------------------hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence 1110 035789999999998866655411111123346788999999999987552 2234
Q ss_pred cCCCCcceEEEccCccccccccCCCCCCCCccCCcCCcccCC
Q 005407 648 LGSTSLDKLLIYYSRHLNNRYNMETGPEWPKISHVPNISFTP 689 (698)
Q Consensus 648 ~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~v~~~~ 689 (698)
..++.|+.+++.+|..++..-- -+...|.|++.++.
T Consensus 423 ~~c~~Leri~l~~~q~vtk~~i------~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 423 SICRNLERIELIDCQDVTKEAI------SRFATHLPNIKVHA 458 (483)
T ss_pred hhCcccceeeeechhhhhhhhh------HHHHhhCccceehh
Confidence 4578999999999987654311 12357889887774
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.33 E-value=3.9e-07 Score=96.72 Aligned_cols=104 Identities=37% Similarity=0.393 Sum_probs=85.0
Q ss_pred ccCccceeeeCC--CCcccchhhcccc-cCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCc
Q 005407 316 DRLTCLRSIDGP--PVRKIPKGIKKLI-HLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRH 392 (698)
Q Consensus 316 ~~l~~L~~L~l~--~~~~lp~~i~~l~-~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~ 392 (698)
..+..+..+++. .+..+|.....+. +|+.|++++|. +..+|..++.+++|+.|++++|. +..+|...+.+++|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhh
Confidence 344667777776 7788888777774 99999999998 99998778999999999999987 8889887778899999
Q ss_pred eecCCccCCCcCCcCCCCCCCCCccCceec
Q 005407 393 LMNSRQDDSSYMPRGMERLTSLRTLGSFVA 422 (698)
Q Consensus 393 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 422 (698)
|+++++ .+..+|..++.+..|+++....+
T Consensus 191 L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 191 LDLSGN-KISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eeccCC-ccccCchhhhhhhhhhhhhhcCC
Confidence 999888 77888887777777888866544
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.22 E-value=9.4e-07 Score=80.05 Aligned_cols=126 Identities=27% Similarity=0.282 Sum_probs=42.1
Q ss_pred CCCCcceEEEecCccchhhhcccccccc-cCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhh-hcCC
Q 005407 289 YNETKLRSLAVPRRLYYKRTIASSKLFD-RLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEAL-CELC 364 (698)
Q Consensus 289 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~-~~l~ 364 (698)
.+..+++.|++.++....+.. +. .+..|+.|+++ .+..++ ++..+.+|+.|++++|. |.+++..+ ..++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~-----L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp 88 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIEN-----LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLP 88 (175)
T ss_dssp --------------------S-------TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-T
T ss_pred ccccccccccccccccccccc-----hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCC
Confidence 345567778877775443221 33 45677777777 566664 47778888888888887 77776544 3578
Q ss_pred CCcEeeccCCCCCcccc--hhhhccccCCceecCCccCCCcCCc----CCCCCCCCCccCceecc
Q 005407 365 NLQTLDVSGCDNLKRLP--ERIGELINLRHLMNSRQDDSSYMPR----GMERLTSLRTLGSFVAS 423 (698)
Q Consensus 365 ~L~~L~l~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~ 423 (698)
+|++|++++|. +..+- ..+..+++|+.|++.+|+... .+. .+..+++|+.|+...+.
T Consensus 89 ~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 89 NLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp T--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEETT
T ss_pred cCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEcc
Confidence 88888888776 44432 235677788888887774332 221 24456666666655443
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1e-07 Score=89.87 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=40.1
Q ss_pred CCCceEEEEeecCCCCC-CCCchhccccCccEEEEcCCCCCCc--CCCCCCCCCcceeeccCCcc
Q 005407 502 RSLEKLEILAYEGDTIP-PTSNWMLSLTKLRVLTLRHCFLCEC--LPCLGKLPCLETLTLEGMTS 563 (698)
Q Consensus 502 ~~L~~L~l~~~~~~~~~-~~p~~~~~l~~L~~L~L~~c~~~~~--l~~l~~L~~L~~L~L~~c~~ 563 (698)
++|+.|++.||.-.-.. .+..-...+++|..|+|++|..++. +..+.+++.|++|.++.|..
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 46677777666433220 0011223688999999999876653 22567788999999998863
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.13 E-value=1.7e-06 Score=91.82 Aligned_cols=180 Identities=26% Similarity=0.294 Sum_probs=116.7
Q ss_pred cchhhcccccCceEeccccccccccchhhhcCC-CCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCC
Q 005407 332 IPKGIKKLIHLRYLALGWNPWIKELPEALCELC-NLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMER 410 (698)
Q Consensus 332 lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~-~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~ 410 (698)
-+..+..+.++..|++.++. +.++|.....+. +|+.|+++++. +..+|..++.+++|+.|++++| .+..+|...+.
T Consensus 108 ~~~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~ 184 (394)
T COG4886 108 NISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSN 184 (394)
T ss_pred CchhhhcccceeEEecCCcc-cccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-hhhhhhhhhhh
Confidence 34456667889999999998 999999888885 99999999987 8999888999999999999988 67788887778
Q ss_pred CCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCccc
Q 005407 411 LTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKG 490 (698)
Q Consensus 411 L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 490 (698)
++.|+.|.+..+.....+... .....|+++.+..+.
T Consensus 185 ~~~L~~L~ls~N~i~~l~~~~--------------------------------------~~~~~L~~l~~~~N~------ 220 (394)
T COG4886 185 LSNLNNLDLSGNKISDLPPEI--------------------------------------ELLSALEELDLSNNS------ 220 (394)
T ss_pred hhhhhheeccCCccccCchhh--------------------------------------hhhhhhhhhhhcCCc------
Confidence 888888876654443322110 001112222222221
Q ss_pred HHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCc
Q 005407 491 HRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMT 562 (698)
Q Consensus 491 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~ 562 (698)
....+..+..+.++..|.+.++....+ +..++.+++|+.|++++|. +..++.++.+.+|+.|++++..
T Consensus 221 ~~~~~~~~~~~~~l~~l~l~~n~~~~~---~~~~~~l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 221 IIELLSSLSNLKNLSGLELSNNKLEDL---PESIGNLSNLETLDLSNNQ-ISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ceecchhhhhcccccccccCCceeeec---cchhccccccceecccccc-ccccccccccCccCEEeccCcc
Confidence 011122222333444444444433333 5666677778888887774 3344447777777888777644
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.3e-06 Score=87.06 Aligned_cols=130 Identities=16% Similarity=0.167 Sum_probs=72.9
Q ss_pred cceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchh--hcccccCc
Q 005407 268 KARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKG--IKKLIHLR 343 (698)
Q Consensus 268 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~--i~~l~~L~ 343 (698)
+++.+++.+..............|++++.|+++++.+....+ +..+...+++|+.|+++ .+....++ -..+.+|+
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 445555555443211111355678889999988876544333 33445667777777776 22222221 22566777
Q ss_pred eEecccccccc--ccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCcc
Q 005407 344 YLALGWNPWIK--ELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQD 399 (698)
Q Consensus 344 ~L~L~~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 399 (698)
.|.|+.|. +. ++-......++|+.|+|.+|..+...-.....++.|+.|++++|.
T Consensus 201 ~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 201 QLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred eEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 77777776 43 233334456677777777764333333334456667777777663
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.11 E-value=1.8e-07 Score=96.00 Aligned_cols=181 Identities=24% Similarity=0.315 Sum_probs=130.9
Q ss_pred CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcC
Q 005407 328 PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRG 407 (698)
Q Consensus 328 ~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~ 407 (698)
.+..+|..++.+..|+.|.|..|. +..+|..+++|..|.+|||+.|. +..+|..+..| -|+.|-+++| +++.+|++
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l-pLkvli~sNN-kl~~lp~~ 161 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDL-PLKVLIVSNN-KLTSLPEE 161 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCChhhhcC-cceeEEEecC-ccccCCcc
Confidence 778899999999999999999998 99999999999999999999987 99999998876 5888888777 88999999
Q ss_pred CCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCC
Q 005407 408 MERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTE 487 (698)
Q Consensus 408 i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 487 (698)
++.+..|..|+...+.... ....+..|..++ .+.+. .+.
T Consensus 162 ig~~~tl~~ld~s~nei~s------lpsql~~l~slr-~l~vr-------------------------------Rn~--- 200 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKNEIQS------LPSQLGYLTSLR-DLNVR-------------------------------RNH--- 200 (722)
T ss_pred cccchhHHHhhhhhhhhhh------chHHhhhHHHHH-HHHHh-------------------------------hhh---
Confidence 9988888888766554443 223333333333 22221 111
Q ss_pred cccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC-C---CCCCCCcceeeccCC
Q 005407 488 TKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP-C---LGKLPCLETLTLEGM 561 (698)
Q Consensus 488 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~-~---l~~L~~L~~L~L~~c 561 (698)
...++..+. .-.|.+|+++++....+ |..+..++.|++|.|.+|+. ..+| . -|...--|+|+..-|
T Consensus 201 ---l~~lp~El~-~LpLi~lDfScNkis~i---Pv~fr~m~~Lq~l~LenNPL-qSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 201 ---LEDLPEELC-SLPLIRLDFSCNKISYL---PVDFRKMRHLQVLQLENNPL-QSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ---hhhCCHHHh-CCceeeeecccCceeec---chhhhhhhhheeeeeccCCC-CCChHHHHhccceeeeeeecchhc
Confidence 111111122 12467777777777777 99999999999999999864 4455 2 344555677877766
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.00 E-value=3.8e-07 Score=88.27 Aligned_cols=257 Identities=20% Similarity=0.135 Sum_probs=118.0
Q ss_pred hcccccCceEecccccccc-----ccchhhhcCCCCcEeeccCCC---CCcccchh-------hhccccCCceecCCccC
Q 005407 336 IKKLIHLRYLALGWNPWIK-----ELPEALCELCNLQTLDVSGCD---NLKRLPER-------IGELINLRHLMNSRQDD 400 (698)
Q Consensus 336 i~~l~~L~~L~L~~~~~l~-----~lp~~~~~l~~L~~L~l~~~~---~l~~lp~~-------i~~l~~L~~L~l~~~~~ 400 (698)
+..+..+.+++|++|. +. .+...+.+.++|+.-++++-. -...+|+. +-..++|+.|++|.|..
T Consensus 26 ~~~~~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3445556666666665 32 233344555566666655411 11223332 22334666677766643
Q ss_pred CCcCCcC----CCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhccccccccccc
Q 005407 401 SSYMPRG----MERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLV 476 (698)
Q Consensus 401 ~~~~p~~----i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~ 476 (698)
-...++. +.+++.|++|.+.++........ .+.. -|.++. ......+.+.|+
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~--~l~~--al~~l~--------------------~~kk~~~~~~Lr 160 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGG--RLGR--ALFELA--------------------VNKKAASKPKLR 160 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHH--HHHH--HHHHHH--------------------HHhccCCCcceE
Confidence 3333332 34556666666655554432111 1100 011000 011122334555
Q ss_pred ceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCC--CCCchhccccCccEEEEcCCCCCCcC-----CCCCC
Q 005407 477 ELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIP--PTSNWMLSLTKLRVLTLRHCFLCECL-----PCLGK 549 (698)
Q Consensus 477 ~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~p~~~~~l~~L~~L~L~~c~~~~~l-----~~l~~ 549 (698)
.+....+.... .+...+...+...+.|+.+.+..+....-. -+-..+..+++|+.|+|.+|.....- ..+..
T Consensus 161 v~i~~rNrlen-~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s 239 (382)
T KOG1909|consen 161 VFICGRNRLEN-GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS 239 (382)
T ss_pred EEEeecccccc-ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc
Confidence 55554443221 223344455555667777777665543210 00112336777777777777544311 13455
Q ss_pred CCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCcc
Q 005407 550 LPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRL 629 (698)
Q Consensus 550 L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L 629 (698)
+|+|+.|++.+|. ++.-+...+... ...++|+|+.|.+.++.--.+- .....-.....|.|
T Consensus 240 ~~~L~El~l~dcl-l~~~Ga~a~~~a-----------------l~~~~p~L~vl~l~gNeIt~da-~~~la~~~~ek~dL 300 (382)
T KOG1909|consen 240 WPHLRELNLGDCL-LENEGAIAFVDA-----------------LKESAPSLEVLELAGNEITRDA-ALALAACMAEKPDL 300 (382)
T ss_pred cchheeecccccc-cccccHHHHHHH-----------------HhccCCCCceeccCcchhHHHH-HHHHHHHHhcchhh
Confidence 6777777777775 333322111100 0234677777776664211000 00000012246777
Q ss_pred ceeeeccC
Q 005407 630 RHLSICWS 637 (698)
Q Consensus 630 ~~L~l~~c 637 (698)
+.|++.+|
T Consensus 301 ~kLnLngN 308 (382)
T KOG1909|consen 301 EKLNLNGN 308 (382)
T ss_pred HHhcCCcc
Confidence 77777775
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.00 E-value=9.4e-06 Score=90.43 Aligned_cols=90 Identities=27% Similarity=0.353 Sum_probs=68.8
Q ss_pred ceeeeCC--CC-cccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCC
Q 005407 321 LRSIDGP--PV-RKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSR 397 (698)
Q Consensus 321 L~~L~l~--~~-~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~ 397 (698)
+..|++. .+ ..+|..++.+.+|+.|+|++|.....+|..++.+++|+.|+|++|.....+|..+++|++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 4555655 22 36777888888888888888873347888888888888888888875567888888888888888888
Q ss_pred ccCCCcCCcCCCC
Q 005407 398 QDDSSYMPRGMER 410 (698)
Q Consensus 398 ~~~~~~~p~~i~~ 410 (698)
|.....+|..++.
T Consensus 500 N~l~g~iP~~l~~ 512 (623)
T PLN03150 500 NSLSGRVPAALGG 512 (623)
T ss_pred CcccccCChHHhh
Confidence 8766677877654
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.99 E-value=4.9e-06 Score=61.52 Aligned_cols=58 Identities=36% Similarity=0.497 Sum_probs=48.4
Q ss_pred ccCceEeccccccccccch-hhhcCCCCcEeeccCCCCCcccch-hhhccccCCceecCCcc
Q 005407 340 IHLRYLALGWNPWIKELPE-ALCELCNLQTLDVSGCDNLKRLPE-RIGELINLRHLMNSRQD 399 (698)
Q Consensus 340 ~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 399 (698)
++|++|++++|. +..+|. .+.++++|++|++++|. +..+|+ .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 468899999997 899885 57889999999999877 677765 57899999999998873
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.98 E-value=1.9e-06 Score=81.41 Aligned_cols=133 Identities=23% Similarity=0.238 Sum_probs=69.5
Q ss_pred cccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCC
Q 005407 472 KMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLP 551 (698)
Q Consensus 472 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~ 551 (698)
...|++++++++.+ ..+-++....|.++.|+++.+....+ ..+..+++|+.|+|++|...+..-+-..|.
T Consensus 283 Wq~LtelDLS~N~I------~~iDESvKL~Pkir~L~lS~N~i~~v----~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLG 352 (490)
T KOG1259|consen 283 WQELTELDLSGNLI------TQIDESVKLAPKLRRLILSQNRIRTV----QNLAELPQLQLLDLSGNLLAECVGWHLKLG 352 (490)
T ss_pred Hhhhhhccccccch------hhhhhhhhhccceeEEeccccceeee----hhhhhcccceEeecccchhHhhhhhHhhhc
Confidence 44566666666552 22233444556666666666665554 225556667777776664333222334456
Q ss_pred CcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccce
Q 005407 552 CLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRH 631 (698)
Q Consensus 552 ~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~ 631 (698)
|.+.|.|.++. ++.++. ...+-+|.+|++++ +++..+.. -.++..+|.|+.
T Consensus 353 NIKtL~La~N~-iE~LSG------------------------L~KLYSLvnLDl~~-N~Ie~lde---V~~IG~LPCLE~ 403 (490)
T KOG1259|consen 353 NIKTLKLAQNK-IETLSG------------------------LRKLYSLVNLDLSS-NQIEELDE---VNHIGNLPCLET 403 (490)
T ss_pred CEeeeehhhhh-Hhhhhh------------------------hHhhhhheeccccc-cchhhHHH---hcccccccHHHH
Confidence 66666666532 333321 34555666666665 23333221 114446777777
Q ss_pred eeeccCCCCCCCC
Q 005407 632 LSICWSPELKALP 644 (698)
Q Consensus 632 L~l~~c~~L~~lp 644 (698)
|.+.+.| +..+|
T Consensus 404 l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 404 LRLTGNP-LAGSV 415 (490)
T ss_pred HhhcCCC-ccccc
Confidence 7777654 44443
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.95 E-value=4e-06 Score=75.99 Aligned_cols=101 Identities=28% Similarity=0.329 Sum_probs=33.6
Q ss_pred cccCccceeeeCC--CCcccchhhc-ccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhh-hccccC
Q 005407 315 FDRLTCLRSIDGP--PVRKIPKGIK-KLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERI-GELINL 390 (698)
Q Consensus 315 ~~~l~~L~~L~l~--~~~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i-~~l~~L 390 (698)
+.+...++.|++. .+..+. .++ .+.+|+.|+|++|. |+.++. +..+++|++|++++|. +..+++.+ ..+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccchHHhCCcC
Confidence 3445567777777 555553 455 57889999999998 888875 8889999999999987 88886656 468899
Q ss_pred CceecCCccCCCcCC--cCCCCCCCCCccCce
Q 005407 391 RHLMNSRQDDSSYMP--RGMERLTSLRTLGSF 420 (698)
Q Consensus 391 ~~L~l~~~~~~~~~p--~~i~~L~~L~~L~~~ 420 (698)
++|++++| .+..+- ..+..+++|+.|++.
T Consensus 91 ~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~ 121 (175)
T PF14580_consen 91 QELYLSNN-KISDLNELEPLSSLPKLRVLSLE 121 (175)
T ss_dssp -EEE-TTS----SCCCCGGGGG-TT--EEE-T
T ss_pred CEEECcCC-cCCChHHhHHHHcCCCcceeecc
Confidence 99999887 333322 123344455555444
No 40
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.93 E-value=0.00027 Score=83.95 Aligned_cols=204 Identities=15% Similarity=0.192 Sum_probs=120.4
Q ss_pred CceEEEEEeCCCCCChhhH-HHHHhhcCCCCCCcEEEEEeCchHHH--HHhCCCCccceecc----CCChHhHHHHHHHH
Q 005407 9 GKKFFLVLDDVWTEEPQNW-ERLWGCLRCGSKGSRILVTTRKVKVA--IAIGTTKSNIIPIE----LLSDEDCWSIFSQV 81 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~-~~l~~~~~~~~~gs~IiiTTR~~~v~--~~~~~~~~~~~~v~----~L~~~~a~~Lf~~~ 81 (698)
+.+++|||||+-.-+.... +.+...++....+-++|||||..--. ...... +...++. +++.+|+.++|...
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~-~~~~~l~~~~l~f~~~e~~~ll~~~ 198 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVR-DQLLEIGSQQLAFDHQEAQQFFDQR 198 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhc-CcceecCHHhCCCCHHHHHHHHHhc
Confidence 5789999999933322222 23433344445566898999984211 111111 2245566 89999999999865
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcccCCHHHHHHHHhhhhccccc-ccccchhhHh-hhccCCC
Q 005407 82 ALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLRFKRKIEEWQRVLESELWELEE-VDKGLLGPLL-LSYRDLP 159 (698)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~-~~~~i~~~l~-~sy~~L~ 159 (698)
....-. .+.+.++.+.|+|.|+++..++..++...... ..... .+.+ ....+...+. -.|+.||
T Consensus 199 ~~~~~~--------~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~l~~~v~~~l~ 264 (903)
T PRK04841 199 LSSPIE--------AAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSAR----RLAGINASHLSDYLVEEVLDNVD 264 (903)
T ss_pred cCCCCC--------HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhH----hhcCCCchhHHHHHHHHHHhcCC
Confidence 432111 23567899999999999999998875432100 00111 1111 1223444443 3478999
Q ss_pred hhHHHHHhhhcCCCCCCccCHHHHHHHHHhcCccccCCCccHHHHHHHHHHHHHhCCCcccccccCCCCeeEEEEEechh
Q 005407 160 PPLKKCFLYCAIFPKDSMLEKDKLIRLWMAQDYLKVKGREDMEVVGEEYFESLAMHSLFQDFERSEHDGRKIIRCKMHDI 239 (698)
Q Consensus 160 ~~~k~~fl~~a~fp~~~~i~~~~Li~~wi~eg~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~~hdl 239 (698)
++.+..++..|+++ . ++. .+... ... ...+...++.+..++++...... .+. .++.|++
T Consensus 265 ~~~~~~l~~~a~~~-~--~~~-~l~~~-----l~~-------~~~~~~~L~~l~~~~l~~~~~~~-~~~----~yr~H~L 323 (903)
T PRK04841 265 LETRHFLLRCSVLR-S--MND-ALIVR-----VTG-------EENGQMRLEELERQGLFIQRMDD-SGE----WFRYHPL 323 (903)
T ss_pred HHHHHHHHHhcccc-c--CCH-HHHHH-----HcC-------CCcHHHHHHHHHHCCCeeEeecC-CCC----EEehhHH
Confidence 99999999999986 2 232 22221 111 11245678889999886421111 111 5678999
Q ss_pred HHHHHHHhc
Q 005407 240 VHDFSQFLT 248 (698)
Q Consensus 240 v~~~~~~~~ 248 (698)
++++.....
T Consensus 324 ~r~~l~~~l 332 (903)
T PRK04841 324 FASFLRHRC 332 (903)
T ss_pred HHHHHHHHH
Confidence 999887643
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.90 E-value=2.6e-06 Score=80.60 Aligned_cols=207 Identities=17% Similarity=0.146 Sum_probs=111.9
Q ss_pred cchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCc-cCCCcCCcCCCC
Q 005407 332 IPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQ-DDSSYMPRGMER 410 (698)
Q Consensus 332 lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~-~~~~~~p~~i~~ 410 (698)
+|-.+.-+.+|+.+.++.|+ .+.+-.-...-+.|+++.+++.. +...|. +--+..+..+-.+.- ..-......+..
T Consensus 206 l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~-~~~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTT-IQDVPS-LLPETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred cccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeeccc-cccccc-ccchhhhcCccCCCCCccCCceEEecch
Confidence 34445556667777777776 55444323333577777777643 333322 111111111111110 001111223444
Q ss_pred CCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCccc
Q 005407 411 LTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKG 490 (698)
Q Consensus 411 L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 490 (698)
.+.|.++++..+.+..+-. +++-++++. .+.+.. ..-....++..+++|+.|+++++..
T Consensus 283 Wq~LtelDLS~N~I~~iDE---SvKL~Pkir----~L~lS~---------N~i~~v~nLa~L~~L~~LDLS~N~L----- 341 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDE---SVKLAPKLR----RLILSQ---------NRIRTVQNLAELPQLQLLDLSGNLL----- 341 (490)
T ss_pred Hhhhhhccccccchhhhhh---hhhhcccee----EEeccc---------cceeeehhhhhcccceEeecccchh-----
Confidence 5566666665544433211 122222222 121111 1111222356677888888887763
Q ss_pred HHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCC--CCcCCCCCCCCCcceeeccCCcceeeeC
Q 005407 491 HRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFL--CECLPCLGKLPCLETLTLEGMTSVKRLG 568 (698)
Q Consensus 491 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~--~~~l~~l~~L~~L~~L~L~~c~~l~~l~ 568 (698)
..+-.+-..+.|.++|.+.++....+ +.++.+.+|.+|++++|.. ++.+..+|+||.|+++.|.+++ +..++
T Consensus 342 -s~~~Gwh~KLGNIKtL~La~N~iE~L----SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 342 -AECVGWHLKLGNIKTLKLAQNKIETL----SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred -HhhhhhHhhhcCEeeeehhhhhHhhh----hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 22223334567889999988776554 4567889999999999863 4466789999999999999877 44443
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.4e-05 Score=53.92 Aligned_cols=40 Identities=35% Similarity=0.489 Sum_probs=31.0
Q ss_pred ccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccc
Q 005407 340 IHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLP 381 (698)
Q Consensus 340 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp 381 (698)
++|++|++++|. +.++|..+++|++|++|++++|. +..+|
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 468888888888 88888888888888888888886 66554
No 43
>PLN03150 hypothetical protein; Provisional
Probab=97.83 E-value=4.1e-05 Score=85.35 Aligned_cols=110 Identities=20% Similarity=0.323 Sum_probs=87.8
Q ss_pred cceEEEecCccchhhhcccccccccCccceeeeCC--CC-cccchhhcccccCceEeccccccccccchhhhcCCCCcEe
Q 005407 293 KLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PV-RKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTL 369 (698)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~-~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L 369 (698)
.++.|.+.++..... .+..+..+++|+.|+++ .+ ..+|..++.+.+|++|+|++|.....+|..++++++|++|
T Consensus 419 ~v~~L~L~~n~L~g~---ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGF---IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCcccc---CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 477888887765433 23457889999999998 34 4789899999999999999999445899999999999999
Q ss_pred eccCCCCCcccchhhhcc-ccCCceecCCccCCCcCC
Q 005407 370 DVSGCDNLKRLPERIGEL-INLRHLMNSRQDDSSYMP 405 (698)
Q Consensus 370 ~l~~~~~l~~lp~~i~~l-~~L~~L~l~~~~~~~~~p 405 (698)
+|++|.....+|..++.+ .++..+++.+|..+...|
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999998777999988764 467788888876554433
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=6.6e-05 Score=76.68 Aligned_cols=69 Identities=25% Similarity=0.326 Sum_probs=52.6
Q ss_pred hcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCC
Q 005407 336 IKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMER 410 (698)
Q Consensus 336 i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~ 410 (698)
+..+.+++.|++++|. ++.+|. + -.+|+.|++++|..+..+|..+. .+|++|++++|..+..+|..+..
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccce
Confidence 4456888899999886 888883 2 24699999999988888887653 58899999988777777765433
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=3.1e-05 Score=79.04 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=50.8
Q ss_pred hccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceeeeCc
Q 005407 495 LECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKRLGN 569 (698)
Q Consensus 495 ~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l~~ 569 (698)
...+..+.+++.|++.+|....+ |. -..+|+.|.+++|..+..+|..- .++|+.|++.+|.++..+|.
T Consensus 45 ~~r~~~~~~l~~L~Is~c~L~sL---P~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 45 TPQIEEARASGRLYIKDCDIESL---PV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHHHHhcCCCEEEeCCCCCccc---CC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc
Confidence 33445568899999998866666 42 23579999999999888777421 36899999999987877664
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.76 E-value=1.8e-06 Score=85.59 Aligned_cols=304 Identities=15% Similarity=0.066 Sum_probs=166.6
Q ss_pred CcceEEEecCccchhhhcccccccccCccceeeeCCCCcccchh-----hcccccCceEeccccccccccc--hhhhcCC
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGPPVRKIPKG-----IKKLIHLRYLALGWNPWIKELP--EALCELC 364 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~lp~~-----i~~l~~L~~L~L~~~~~l~~lp--~~~~~l~ 364 (698)
..|+.|.+.++......+ ...+-.+++++..|.+.....+-+. -..+.+|++|+|..|.+++..- .-...++
T Consensus 138 g~lk~LSlrG~r~v~~ss-lrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSS-LRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred cccccccccccccCCcch-hhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 347788888775443332 3444567777777777755555433 2368899999999988776432 2245788
Q ss_pred CCcEeeccCCCCCcc--cchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCccccccccccccccc
Q 005407 365 NLQTLDVSGCDNLKR--LPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKH 442 (698)
Q Consensus 365 ~L~~L~l~~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~ 442 (698)
+|++|+++.|..+.. +-.-..+.++|+.+...+|.... ++.|..... .+ ..+.
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~-----------le~l~~~~~-------~~---~~i~---- 271 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE-----------LEALLKAAA-------YC---LEIL---- 271 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc-----------HHHHHHHhc-------cC---hHhh----
Confidence 999999999986654 11112334444455444442211 111100000 00 0000
Q ss_pred ccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCc
Q 005407 443 LEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSN 522 (698)
Q Consensus 443 L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~ 522 (698)
.+.+..+..+.+ ......-..+..|+.+..+.+.. .+...+..-....++|+.|.+.++..-.-.. -.
T Consensus 272 ---~lnl~~c~~lTD-----~~~~~i~~~c~~lq~l~~s~~t~---~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~-ft 339 (483)
T KOG4341|consen 272 ---KLNLQHCNQLTD-----EDLWLIACGCHALQVLCYSSCTD---ITDEVLWALGQHCHNLQVLELSGCQQFSDRG-FT 339 (483)
T ss_pred ---ccchhhhccccc-----hHHHHHhhhhhHhhhhcccCCCC---CchHHHHHHhcCCCceEEEeccccchhhhhh-hh
Confidence 011111111111 11111112355666676665553 2222333333445788888887766321100 01
Q ss_pred hh-ccccCccEEEEcCCCCCCc--CCC-CCCCCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCC
Q 005407 523 WM-LSLTKLRVLTLRHCFLCEC--LPC-LGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFP 598 (698)
Q Consensus 523 ~~-~~l~~L~~L~L~~c~~~~~--l~~-l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (698)
.+ .+.+.|+.+++.+|..... +-+ -.++|.|+.|.|+.|..++.-+...+... .-+..
T Consensus 340 ~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~------------------~c~~~ 401 (483)
T KOG4341|consen 340 MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS------------------SCSLE 401 (483)
T ss_pred hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc------------------ccccc
Confidence 12 2678899999999875432 222 34688899999998875554422211110 24677
Q ss_pred cccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCc--cccCCCCcce
Q 005407 599 RLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPD--YILGSTSLDK 655 (698)
Q Consensus 599 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~--~~~~l~~L~~ 655 (698)
.|+.+.+.+||.+++-.. ......++|+++++.+|.....-+. ...+++++++
T Consensus 402 ~l~~lEL~n~p~i~d~~L----e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATL----EHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred ccceeeecCCCCchHHHH----HHHhhCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence 888899999887766543 2344688999999999988765432 2233455443
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.57 E-value=6.4e-05 Score=55.46 Aligned_cols=59 Identities=27% Similarity=0.372 Sum_probs=47.7
Q ss_pred CCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCc
Q 005407 502 RSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMT 562 (698)
Q Consensus 502 ~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~ 562 (698)
++|++|.+.++....++ +.++..+++|++|++++|......+ .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~--~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIP--PDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEEC--TTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccC--HHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46888888888777774 5688899999999999886654433 68899999999999864
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.56 E-value=9.4e-06 Score=78.86 Aligned_cols=254 Identities=20% Similarity=0.196 Sum_probs=138.7
Q ss_pred cCCCCcceEEEecCccchhhh-cccccccccCccceeeeCCC------Ccccch-------hhcccccCceEeccccccc
Q 005407 288 VYNETKLRSLAVPRRLYYKRT-IASSKLFDRLTCLRSIDGPP------VRKIPK-------GIKKLIHLRYLALGWNPWI 353 (698)
Q Consensus 288 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~------~~~lp~-------~i~~l~~L~~L~L~~~~~l 353 (698)
...+..+..++++++.+.... ......+.+.+.|+.-+++. ...+|+ .+-.+++|++|+||.|. +
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA-~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA-F 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc-c
Confidence 345667788888887654322 12234456677788777761 223443 34456789999999987 4
Q ss_pred c-c----cchhhhcCCCCcEeeccCCCCCcccch-hhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCC
Q 005407 354 K-E----LPEALCELCNLQTLDVSGCDNLKRLPE-RIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKS 427 (698)
Q Consensus 354 ~-~----lp~~~~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~ 427 (698)
. . +-.-+..++.|++|.|.+|. +...-. .++. .|.+|.. + ..+++-..|+++....+.....
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l~~--~-------kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFELAV--N-------KKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHHHH--H-------hccCCCcceEEEEeeccccccc
Confidence 3 2 23346678899999999887 332211 1111 1222210 0 1122223344443333332221
Q ss_pred ccc--ccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCc
Q 005407 428 SKA--CSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLE 505 (698)
Q Consensus 428 ~~~--~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 505 (698)
+.. ...++..+.|..++ +..+.+. .. ...+....+..+++|+.|++..+..+. .+...+...++.+++|+
T Consensus 173 ga~~~A~~~~~~~~leevr--~~qN~I~--~e---G~~al~eal~~~~~LevLdl~DNtft~-egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVR--LSQNGIR--PE---GVTALAEALEHCPHLEVLDLRDNTFTL-EGSVALAKALSSWPHLR 244 (382)
T ss_pred cHHHHHHHHHhccccceEE--Eeccccc--Cc---hhHHHHHHHHhCCcceeeecccchhhh-HHHHHHHHHhcccchhe
Confidence 110 00122223333221 1111110 00 113455667889999999998776432 23455667778888999
Q ss_pred eEEEEeecCCCCCC--CCc-hhccccCccEEEEcCCCCCCc----C-CCCCCCCCcceeeccCCc
Q 005407 506 KLEILAYEGDTIPP--TSN-WMLSLTKLRVLTLRHCFLCEC----L-PCLGKLPCLETLTLEGMT 562 (698)
Q Consensus 506 ~L~l~~~~~~~~~~--~p~-~~~~l~~L~~L~L~~c~~~~~----l-~~l~~L~~L~~L~L~~c~ 562 (698)
.|++.+|....--. +-. .-...++|+.|.+.+|..... + -.+...|.|..|+|.+|.
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 99998876543200 000 111578999999999965431 1 145568999999999875
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=3.6e-06 Score=79.68 Aligned_cols=135 Identities=21% Similarity=0.178 Sum_probs=76.0
Q ss_pred CCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC-----CCCCCCCcceeeccCCcceeeeCccccCC
Q 005407 500 PPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP-----CLGKLPCLETLTLEGMTSVKRLGNEFLGI 574 (698)
Q Consensus 500 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~-----~l~~L~~L~~L~L~~c~~l~~l~~~~~~~ 574 (698)
.-.+|..|++..+.+.+-..+---+.+++.|..|+|+.|....... .++ ++|+.|+|+||-. .+...-+..
T Consensus 232 kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rr--nl~~sh~~t 307 (419)
T KOG2120|consen 232 KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRR--NLQKSHLST 307 (419)
T ss_pred ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHh--hhhhhHHHH
Confidence 3345666666665554322112234467777777777775443221 233 6677777777642 221111000
Q ss_pred CccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCc---cccCCC
Q 005407 575 AEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPD---YILGST 651 (698)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~---~~~~l~ 651 (698)
-...+|+|..|+|+++..++.=.. ..+..|+.|++|.++.|..+ .|. .+...+
T Consensus 308 ------------------L~~rcp~l~~LDLSD~v~l~~~~~----~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~p 363 (419)
T KOG2120|consen 308 ------------------LVRRCPNLVHLDLSDSVMLKNDCF----QEFFKFNYLQHLSLSRCYDI--IPETLLELNSKP 363 (419)
T ss_pred ------------------HHHhCCceeeeccccccccCchHH----HHHHhcchheeeehhhhcCC--ChHHeeeeccCc
Confidence 024677888888887766665221 12336788888888888764 232 233467
Q ss_pred CcceEEEccCc
Q 005407 652 SLDKLLIYYSR 662 (698)
Q Consensus 652 ~L~~L~i~~C~ 662 (698)
+|.+|++.+|-
T Consensus 364 sl~yLdv~g~v 374 (419)
T KOG2120|consen 364 SLVYLDVFGCV 374 (419)
T ss_pred ceEEEEecccc
Confidence 88888888874
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.38 E-value=0.00016 Score=48.79 Aligned_cols=39 Identities=33% Similarity=0.409 Sum_probs=32.0
Q ss_pred CCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcC
Q 005407 364 CNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYM 404 (698)
Q Consensus 364 ~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~ 404 (698)
++|++|++++|. +..+|..+++|++|+.|++++| .+..+
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 579999999987 8899998999999999999998 44443
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.15 E-value=0.00011 Score=78.15 Aligned_cols=104 Identities=26% Similarity=0.320 Sum_probs=62.2
Q ss_pred cccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCc
Q 005407 315 FDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRH 392 (698)
Q Consensus 315 ~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~ 392 (698)
+..++.|..+++. .+.++...+..+.+|++|++++|. |+.+.. +..+..|+.|++.+|. +..+.. +..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNL-ISDISG-LESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCc-chhccC-Cccchhhhc
Confidence 4455566666655 455554436667777777777777 777665 6667777777777765 555533 555677777
Q ss_pred eecCCccCCCcCCcC-CCCCCCCCccCceecc
Q 005407 393 LMNSRQDDSSYMPRG-MERLTSLRTLGSFVAS 423 (698)
Q Consensus 393 L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~ 423 (698)
+++++|. +..+... +..+.+++.+.+..+.
T Consensus 167 l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 167 LDLSYNR-IVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCCcch-hhhhhhhhhhhccchHHHhccCCc
Confidence 7777663 3333221 3455555555554433
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.00018 Score=68.46 Aligned_cols=62 Identities=19% Similarity=0.145 Sum_probs=38.4
Q ss_pred cCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCC-------CCCCCCcceeecc
Q 005407 497 CLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPC-------LGKLPCLETLTLE 559 (698)
Q Consensus 497 ~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~-------l~~L~~L~~L~L~ 559 (698)
...+++.+.-|++..+....... -..+..++.|..|.+++++..+.+.. ++.|++++.|+=+
T Consensus 219 ~se~~p~~~~LnL~~~~idswas-vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 219 GSEPFPSLSCLNLGANNIDSWAS-VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cCCCCCcchhhhhcccccccHHH-HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 34455666666665544432211 12244789999999999988776542 4567777777644
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.90 E-value=0.00018 Score=76.63 Aligned_cols=93 Identities=31% Similarity=0.295 Sum_probs=70.0
Q ss_pred CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcC
Q 005407 328 PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRG 407 (698)
Q Consensus 328 ~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~ 407 (698)
.+.+.-..++.+.+|.+|++.+|. |..+...+..+.+|++|++++|. +..+. .+..+..|+.|++++| .+..+. +
T Consensus 83 ~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~N-~i~~~~-~ 157 (414)
T KOG0531|consen 83 LIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSGN-LISDIS-G 157 (414)
T ss_pred hhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccc-ccccc-chhhccchhhheeccC-cchhcc-C
Confidence 334433347788999999999998 88887768889999999999987 77774 4788888999999988 444333 4
Q ss_pred CCCCCCCCccCceeccCC
Q 005407 408 MERLTSLRTLGSFVASRG 425 (698)
Q Consensus 408 i~~L~~L~~L~~~~~~~~ 425 (698)
+..+..|+.+++..+...
T Consensus 158 ~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 158 LESLKSLKLLDLSYNRIV 175 (414)
T ss_pred CccchhhhcccCCcchhh
Confidence 555777777776655544
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.85 E-value=0.0006 Score=76.04 Aligned_cols=127 Identities=27% Similarity=0.274 Sum_probs=84.3
Q ss_pred cceEEEEEccCCCcccCCc-ccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCce
Q 005407 268 KARHLMIMGEMSKEVPFPS-FVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRY 344 (698)
Q Consensus 268 ~~~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~ 344 (698)
+++++.+.+...-...++. ....+|.|++|.+.+..+.... +.....++++|+.||++ ++..+ .++++|++|+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 3455555443321111222 2345789999999987554332 34456788999999999 66667 67999999999
Q ss_pred Eeccccccccccc--hhhhcCCCCcEeeccCCCCCcccchh-------hhccccCCceecCCcc
Q 005407 345 LALGWNPWIKELP--EALCELCNLQTLDVSGCDNLKRLPER-------IGELINLRHLMNSRQD 399 (698)
Q Consensus 345 L~L~~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~~-------i~~l~~L~~L~l~~~~ 399 (698)
|.+++-. +..-. ..+.+|++|++||++....... +.. -..|++||.||.+++.
T Consensus 200 L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCC-CCchhhHHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcc
Confidence 9988766 44322 3477899999999998653322 211 1348899999988764
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.85 E-value=0.0003 Score=59.12 Aligned_cols=81 Identities=26% Similarity=0.301 Sum_probs=48.0
Q ss_pred ccCccceeeeCC--CCcccchhhcc-cccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCc
Q 005407 316 DRLTCLRSIDGP--PVRKIPKGIKK-LIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRH 392 (698)
Q Consensus 316 ~~l~~L~~L~l~--~~~~lp~~i~~-l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~ 392 (698)
.+..+|...+++ .++++|+.+.. .+.+..|+|.+|. +.++|.++..++.|+.|++++|. +...|.-|..|.+|-.
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDM 127 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHH
Confidence 334444444444 45556655443 3356666666666 66666666666666666666655 5566666666666666
Q ss_pred eecCCc
Q 005407 393 LMNSRQ 398 (698)
Q Consensus 393 L~l~~~ 398 (698)
|+..++
T Consensus 128 Lds~~n 133 (177)
T KOG4579|consen 128 LDSPEN 133 (177)
T ss_pred hcCCCC
Confidence 665544
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.67 E-value=0.00015 Score=60.83 Aligned_cols=89 Identities=22% Similarity=0.249 Sum_probs=71.6
Q ss_pred hhhcccccCceEeccccccccccchhhhcC-CCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCC
Q 005407 334 KGIKKLIHLRYLALGWNPWIKELPEALCEL-CNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLT 412 (698)
Q Consensus 334 ~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l-~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~ 412 (698)
..+.+..+|...+|++|. ++.+|+.+... +.+++|++.+|. +..+|.++..++.|+.|+++.| .+...|.-+..|.
T Consensus 47 y~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~ 123 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLI 123 (177)
T ss_pred HHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccC-ccccchHHHHHHH
Confidence 345667788889999999 99999887655 489999999977 9999999999999999999888 5667787777777
Q ss_pred CCCccCceeccCC
Q 005407 413 SLRTLGSFVASRG 425 (698)
Q Consensus 413 ~L~~L~~~~~~~~ 425 (698)
+|-.|+.-.+...
T Consensus 124 ~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 124 KLDMLDSPENARA 136 (177)
T ss_pred hHHHhcCCCCccc
Confidence 7777765444433
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.50 E-value=0.0013 Score=62.01 Aligned_cols=124 Identities=17% Similarity=0.067 Sum_probs=68.1
Q ss_pred ccCCCCCCCceEEEEeecCCCCCCCCchh--------ccccCccEEEEcCCCCCCcCC-----CCCCCCCcceeeccCCc
Q 005407 496 ECLQPPRSLEKLEILAYEGDTIPPTSNWM--------LSLTKLRVLTLRHCFLCECLP-----CLGKLPCLETLTLEGMT 562 (698)
Q Consensus 496 ~~~~~~~~L~~L~l~~~~~~~~~~~p~~~--------~~l~~L~~L~L~~c~~~~~l~-----~l~~L~~L~~L~L~~c~ 562 (698)
..+....+|+.+++..+.+. |..+ .++++|+.|+|.+|.....-. .+...+.|+.|.+.+|-
T Consensus 179 ~~l~sh~~lk~vki~qNgIr-----pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 179 ALLESHENLKEVKIQQNGIR-----PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHhhcCceeEEeeecCcC-----cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 34445568888888777654 4322 267889999998886543211 34456778999998885
Q ss_pred ceeeeCcc-ccCCCccccccccccccccccccCcCCCcccccccccccccccCcc-cc-cCCCcCCCCccceeeeccCCC
Q 005407 563 SVKRLGNE-FLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDD-CE-IAGGKTIMPRLRHLSICWSPE 639 (698)
Q Consensus 563 ~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~-~~~~~~~~~~L~~L~l~~c~~ 639 (698)
++.-+.. ++.. .....+|+|..|...+...-..+.. +. ..-....+|-|..|++.+ +.
T Consensus 254 -ls~~G~~~v~~~-----------------f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr 314 (388)
T COG5238 254 -LSNEGVKSVLRR-----------------FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NR 314 (388)
T ss_pred -hccccHHHHHHH-----------------hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc-Cc
Confidence 3322221 1100 0024577888777765422111110 00 000112678888888876 35
Q ss_pred CCCC
Q 005407 640 LKAL 643 (698)
Q Consensus 640 L~~l 643 (698)
+...
T Consensus 315 ~~E~ 318 (388)
T COG5238 315 IKEL 318 (388)
T ss_pred chhH
Confidence 5554
No 58
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.22 E-value=0.05 Score=54.20 Aligned_cols=111 Identities=16% Similarity=0.120 Sum_probs=70.1
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCC---CCCCcEEEEEeCchHHHHHhCC--------CCccceeccCCChHhHHH
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRC---GSKGSRILVTTRKVKVAIAIGT--------TKSNIIPIELLSDEDCWS 76 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~---~~~gs~IiiTTR~~~v~~~~~~--------~~~~~~~v~~L~~~~a~~ 76 (698)
.+++++||+||+|..+...++.+...... ......|++|.... ....... .....+++++++.+|..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 67889999999988766667766533221 12223455665432 2211111 002257899999999999
Q ss_pred HHHHHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 005407 77 IFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLL 120 (698)
Q Consensus 77 Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L 120 (698)
++...+...... ....=-.+....|++.++|.|..|..++..+
T Consensus 200 ~l~~~l~~~g~~-~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNR-DAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCC-CCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 988775432211 0000113578899999999999999999775
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.19 E-value=0.0024 Score=71.37 Aligned_cols=126 Identities=21% Similarity=0.201 Sum_probs=79.8
Q ss_pred CCcceEEEecCccchhhhcccccccccCccceeeeCCCCc----ccchhhcccccCceEeccccccccccchhhhcCCCC
Q 005407 291 ETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGPPVR----KIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNL 366 (698)
Q Consensus 291 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L 366 (698)
-.+|+.|++.+.......+ ....-..++.|+.|.+.+.. .+-.-..++++|+.||+|++. +..+ ..+++|++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W-~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGW-PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccH-HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccH
Confidence 4578888888854332222 12223446666666666332 222334578999999999998 9988 559999999
Q ss_pred cEeeccCCCCCcccc--hhhhccccCCceecCCccCCCcC--Cc----CCCCCCCCCccCce
Q 005407 367 QTLDVSGCDNLKRLP--ERIGELINLRHLMNSRQDDSSYM--PR----GMERLTSLRTLGSF 420 (698)
Q Consensus 367 ~~L~l~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~--p~----~i~~L~~L~~L~~~ 420 (698)
++|.+++=. +..-. ..+.+|++|+.||+|........ .. --..|++|+.|+..
T Consensus 198 q~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 198 QVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred HHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 999998733 33222 34788999999999876433221 11 11235666666554
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.17 E-value=0.00071 Score=72.31 Aligned_cols=82 Identities=27% Similarity=0.295 Sum_probs=42.3
Q ss_pred hhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchh-hhccccCCceecCCccCCCcCCcCCCCCCC
Q 005407 335 GIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPER-IGELINLRHLMNSRQDDSSYMPRGMERLTS 413 (698)
Q Consensus 335 ~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~ 413 (698)
++.-++.|+.|||+.|+ +...- .+..|++|++|||++|. +..+|.- .... +|+.|.+++| .++.+ .+|.+|++
T Consensus 182 SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN-~l~tL-~gie~Lks 255 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNN-ALTTL-RGIENLKS 255 (1096)
T ss_pred HHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeeccc-HHHhh-hhHHhhhh
Confidence 34445666666666666 44443 35566666666666655 5555542 1112 2555555555 22222 24555555
Q ss_pred CCccCceec
Q 005407 414 LRTLGSFVA 422 (698)
Q Consensus 414 L~~L~~~~~ 422 (698)
|+.|++..+
T Consensus 256 L~~LDlsyN 264 (1096)
T KOG1859|consen 256 LYGLDLSYN 264 (1096)
T ss_pred hhccchhHh
Confidence 555555433
No 61
>PRK06893 DNA replication initiation factor; Validated
Probab=96.02 E-value=0.03 Score=54.10 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=63.0
Q ss_pred EEEEEeCCCCCC-hhhHHH-HHhhcCCC-CCCcEEEEEeCc----------hHHHHHhCCCCccceeccCCChHhHHHHH
Q 005407 12 FFLVLDDVWTEE-PQNWER-LWGCLRCG-SKGSRILVTTRK----------VKVAIAIGTTKSNIIPIELLSDEDCWSIF 78 (698)
Q Consensus 12 ~LlVLDdvw~~~-~~~~~~-l~~~~~~~-~~gs~IiiTTR~----------~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf 78 (698)
-+||+||+|... ..+|+. +...++.. ..|+.|||+|.+ .++..++... .+++++++++++.++++
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g--~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG--EIYQLNDLTDEQKIIVL 170 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC--CeeeCCCCCHHHHHHHH
Confidence 489999998642 245653 33333322 235566555444 4667766653 38999999999999999
Q ss_pred HHHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHH
Q 005407 79 SQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLG 117 (698)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g 117 (698)
.+.++...-. .. +++..-|++++.|-.-++..+=
T Consensus 171 ~~~a~~~~l~--l~---~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 171 QRNAYQRGIE--LS---DEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHcCCC--CC---HHHHHHHHHhccCCHHHHHHHH
Confidence 9998754432 11 2466677888877655444433
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.97 E-value=0.0013 Score=71.94 Aligned_cols=166 Identities=17% Similarity=0.054 Sum_probs=77.2
Q ss_pred cccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCC---CCcCC--C
Q 005407 472 KMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFL---CECLP--C 546 (698)
Q Consensus 472 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~---~~~l~--~ 546 (698)
+++|+.|.+..+.. .+...+......+++|+.|++.++....-..+.....++++|+.|.+..+.. ++... .
T Consensus 268 c~~L~~L~l~~c~~---lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~ 344 (482)
T KOG1947|consen 268 CPNLETLSLSNCSN---LTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSG 344 (482)
T ss_pred CCCcceEccCCCCc---cchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHH
Confidence 66777777555542 2233444444555667777776655532211122233455555544443322 22111 1
Q ss_pred CCCCC--CcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCccc-ccccccccccc-cCcccccCCC
Q 005407 547 LGKLP--CLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLE-TLIFLLMTNWE-EWDDCEIAGG 622 (698)
Q Consensus 547 l~~L~--~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~-~~~~~~~~~~ 622 (698)
+.... .+..+.+.+|++++.+.....+ ..... .+.+.+|+.++ .+.. .
T Consensus 345 ~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-----------------------~~~~~~~~~l~gc~~l~~~l~~-----~ 396 (482)
T KOG1947|consen 345 LLTLTSDDLAELILRSCPKLTDLSLSYCG-----------------------ISDLGLELSLRGCPNLTESLEL-----R 396 (482)
T ss_pred hhccCchhHhHHHHhcCCCcchhhhhhhh-----------------------ccCcchHHHhcCCcccchHHHH-----H
Confidence 11111 4555555555555554333221 11111 34444555442 1111 1
Q ss_pred cCCCCccceeeeccCCCCCCCCccc--cCCCCcceEEEccCccccccc
Q 005407 623 KTIMPRLRHLSICWSPELKALPDYI--LGSTSLDKLLIYYSRHLNNRY 668 (698)
Q Consensus 623 ~~~~~~L~~L~l~~c~~L~~lp~~~--~~l~~L~~L~i~~C~~l~~~~ 668 (698)
.....+++.|.+..|...+.---.. ..+..+..+++.+|+.++...
T Consensus 397 ~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 397 LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred hccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 1123337888888876554422111 115667778888887766654
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.96 E-value=0.001 Score=72.80 Aligned_cols=61 Identities=26% Similarity=0.207 Sum_probs=31.5
Q ss_pred cccCceEeccccccccc--cchhhhcCCCCcEeeccCC-CCCcccc----hhhhccccCCceecCCcc
Q 005407 339 LIHLRYLALGWNPWIKE--LPEALCELCNLQTLDVSGC-DNLKRLP----ERIGELINLRHLMNSRQD 399 (698)
Q Consensus 339 l~~L~~L~L~~~~~l~~--lp~~~~~l~~L~~L~l~~~-~~l~~lp----~~i~~l~~L~~L~l~~~~ 399 (698)
+++|+.|.+.+|..+.. +-.....+++|+.|++++| ......+ .....+.+|+.|+++.+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 55666666666654554 3344556666777776662 2222222 112334556666666553
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.0022 Score=61.33 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=37.1
Q ss_pred cccCccEEEEcCCCCCC--cCCCCCCCCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCccccc
Q 005407 526 SLTKLRVLTLRHCFLCE--CLPCLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETL 603 (698)
Q Consensus 526 ~l~~L~~L~L~~c~~~~--~l~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 603 (698)
.++|+..+.+..|+.-+ .-.....+|.+-.|+|.. .++..+.. +....+||+|..|
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~-~~idswas---------------------vD~Ln~f~~l~dl 254 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA-NNIDSWAS---------------------VDALNGFPQLVDL 254 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcc-cccccHHH---------------------HHHHcCCchhhee
Confidence 36777777777775322 222344566666666654 22333311 1114677777777
Q ss_pred ccccccccccCc
Q 005407 604 IFLLMTNWEEWD 615 (698)
Q Consensus 604 ~l~~~~~l~~~~ 615 (698)
.+.+.|-+..+.
T Consensus 255 Rv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 255 RVSENPLSDPLR 266 (418)
T ss_pred eccCCccccccc
Confidence 777665544443
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.75 E-value=0.0044 Score=34.64 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=12.5
Q ss_pred cCceEeccccccccccchhhhc
Q 005407 341 HLRYLALGWNPWIKELPEALCE 362 (698)
Q Consensus 341 ~L~~L~L~~~~~l~~lp~~~~~ 362 (698)
+|++|++++|. ++.+|+++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 35666666665 6666665443
No 66
>PF05729 NACHT: NACHT domain
Probab=95.42 E-value=0.043 Score=49.92 Aligned_cols=72 Identities=22% Similarity=0.292 Sum_probs=48.0
Q ss_pred CCceEEEEEeCCCCCChh-------hHHHHH-hhcCC-CCCCcEEEEEeCchHH--H-HHhCCCCccceeccCCChHhHH
Q 005407 8 EGKKFFLVLDDVWTEEPQ-------NWERLW-GCLRC-GSKGSRILVTTRKVKV--A-IAIGTTKSNIIPIELLSDEDCW 75 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~-------~~~~l~-~~~~~-~~~gs~IiiTTR~~~v--~-~~~~~~~~~~~~v~~L~~~~a~ 75 (698)
+.++++||+|++.+-... .+..+. ..++. ..++.+||||+|.... . ...... ..++++++++++..
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 156 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQA--QILELEPFSEEDIK 156 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCC--cEEEECCCCHHHHH
Confidence 578999999999432210 122222 22222 3568999999999776 2 223332 47999999999999
Q ss_pred HHHHHH
Q 005407 76 SIFSQV 81 (698)
Q Consensus 76 ~Lf~~~ 81 (698)
+++.++
T Consensus 157 ~~~~~~ 162 (166)
T PF05729_consen 157 QYLRKY 162 (166)
T ss_pred HHHHHH
Confidence 998765
No 67
>COG3903 Predicted ATPase [General function prediction only]
Probab=95.36 E-value=0.0084 Score=60.62 Aligned_cols=171 Identities=20% Similarity=0.126 Sum_probs=113.2
Q ss_pred hhhhhcCCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchHHHHHhCCCCccceeccCCChH-hHHHHHHH
Q 005407 2 QLHESIEGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKVAIAIGTTKSNIIPIELLSDE-DCWSIFSQ 80 (698)
Q Consensus 2 ~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~v~~L~~~-~a~~Lf~~ 80 (698)
++..+..++|.++|+||. +.-..+-..+...+..+.+.-.|+.|+|.... ..++.++.+++|+.. ++.++|..
T Consensus 80 ~~~~~~~~rr~llvldnc-ehl~~~~a~~i~all~~~~~~~~~atsre~~l-----~~ge~~~~~~~L~~~d~a~~lf~~ 153 (414)
T COG3903 80 TLVRRIGDRRALLVLDNC-EHLLDACAALIVALLGACPRLAILATSREAIL-----VAGEVHRRVPSLSLFDEAIELFVC 153 (414)
T ss_pred HHHHHHhhhhHHHHhcCc-HHHHHHHHHHHHHHHccchhhhhHHHhHhhhc-----ccccccccCCccccCCchhHHHHH
Confidence 455677889999999998 11222333344555555555678888885333 333557889998865 79999998
Q ss_pred HhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcccCCHHHHHHHHhhhhcccccc-------cccchhhHhh
Q 005407 81 VALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLRFKRKIEEWQRVLESELWELEEV-------DKGLLGPLLL 153 (698)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~~-------~~~i~~~l~~ 153 (698)
.|.....++-....-...+.+|.++.+|.|+||...++..+.-. ..+--+.+......+.+. .......+.+
T Consensus 154 ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~w 232 (414)
T COG3903 154 RAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDW 232 (414)
T ss_pred HHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhh
Confidence 87655544332333455788999999999999999998875442 222222222111111111 2457788999
Q ss_pred hccCCChhHHHHHhhhcCCCCCCccC
Q 005407 154 SYRDLPPPLKKCFLYCAIFPKDSMLE 179 (698)
Q Consensus 154 sy~~L~~~~k~~fl~~a~fp~~~~i~ 179 (698)
||.-|....+--|--++.|..++...
T Consensus 233 s~~lLtgwe~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 233 SYALLTGWERALFGRLAVFVGGFDLG 258 (414)
T ss_pred hhHhhhhHHHHHhcchhhhhhhhccc
Confidence 99999999999999999887776444
No 68
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.05 E-value=0.0024 Score=68.43 Aligned_cols=104 Identities=24% Similarity=0.197 Sum_probs=74.6
Q ss_pred ccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchh-hcccccCceEeccccccccccchhhhcC
Q 005407 287 FVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKG-IKKLIHLRYLALGWNPWIKELPEALCEL 363 (698)
Q Consensus 287 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~~l 363 (698)
.+.-.+.+++|+++.|.+.... .+..+..|+.||++ .+..+|.- ...+. |..|++++|. +++|-. +.+|
T Consensus 182 SLqll~ale~LnLshNk~~~v~-----~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~g-ie~L 253 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-----NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTLRG-IENL 253 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-----HHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhhhh-HHhh
Confidence 3444677888999888654432 36778888888888 56666642 22333 8899999998 888876 8899
Q ss_pred CCCcEeeccCCCCCcccc--hhhhccccCCceecCCcc
Q 005407 364 CNLQTLDVSGCDNLKRLP--ERIGELINLRHLMNSRQD 399 (698)
Q Consensus 364 ~~L~~L~l~~~~~l~~lp--~~i~~l~~L~~L~l~~~~ 399 (698)
.+|+.||+++|- +...- .-++.|..|+.|.+.+|.
T Consensus 254 ksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 254 KSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 999999999875 33221 236788889999998884
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.89 E-value=0.017 Score=54.62 Aligned_cols=85 Identities=27% Similarity=0.188 Sum_probs=46.8
Q ss_pred ccccCceEecccc--ccccccchhhhcCCCCcEeeccCCCCCc---ccchhhhccccCCceecCCccCCCcCC--c-CCC
Q 005407 338 KLIHLRYLALGWN--PWIKELPEALCELCNLQTLDVSGCDNLK---RLPERIGELINLRHLMNSRQDDSSYMP--R-GME 409 (698)
Q Consensus 338 ~l~~L~~L~L~~~--~~l~~lp~~~~~l~~L~~L~l~~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~~p--~-~i~ 409 (698)
.|++|++|.++.| .....++...-++++|++|++++|. ++ ++++ +..+.+|..|++.+|......- + .+.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p-l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP-LKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccch-hhhhcchhhhhcccCCccccccHHHHHHH
Confidence 4667777777777 3233555555566777777777765 33 2222 4566667777777664332100 0 123
Q ss_pred CCCCCCccCceeccC
Q 005407 410 RLTSLRTLGSFVASR 424 (698)
Q Consensus 410 ~L~~L~~L~~~~~~~ 424 (698)
-+++|..|+......
T Consensus 141 ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 141 LLPSLKYLDGCDVDG 155 (260)
T ss_pred HhhhhccccccccCC
Confidence 345555565554443
No 70
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.55 E-value=0.45 Score=48.87 Aligned_cols=157 Identities=18% Similarity=0.140 Sum_probs=84.7
Q ss_pred CcEEEEEeCchHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHH
Q 005407 40 GSRILVTTRKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSL 119 (698)
Q Consensus 40 gs~IiiTTR~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~ 119 (698)
.+-|..|||...+.......-...+++++++.++..+++.+.+....... . .+....|++.|+|.|-.+..+...
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~--~---~~~~~~ia~~~~G~pR~a~~~l~~ 225 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI--D---EEGALEIARRSRGTPRIANRLLRR 225 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc--C---HHHHHHHHHHcCCCchHHHHHHHH
Confidence 34566677754443221110023689999999999999998876543321 1 246889999999999544444432
Q ss_pred hcccCCHHHHHHHHhhhhcccc-cccccchhhHhhhccCCChhHHHHHh-hhcCCCCCCccCHHHHHHHHHhcCccccCC
Q 005407 120 LRFKRKIEEWQRVLESELWELE-EVDKGLLGPLLLSYRDLPPPLKKCFL-YCAIFPKDSMLEKDKLIRLWMAQDYLKVKG 197 (698)
Q Consensus 120 L~~~~~~~~w~~~l~~~~~~~~-~~~~~i~~~l~~sy~~L~~~~k~~fl-~~a~fp~~~~i~~~~Li~~wi~eg~~~~~~ 197 (698)
+ ..|....... ... ..-......+...|..|++..+..+. ....|..+ .+..+.+.... . ..
T Consensus 226 ~------~~~a~~~~~~--~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g-~~ 289 (328)
T PRK00080 226 V------RDFAQVKGDG--VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------G-EE 289 (328)
T ss_pred H------HHHHHHcCCC--CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------C-CC
Confidence 2 1222111100 000 00012334456778888887777765 55566554 34544432221 1 11
Q ss_pred CccHHHHHHHHHH-HHHhCCCcccc
Q 005407 198 REDMEVVGEEYFE-SLAMHSLFQDF 221 (698)
Q Consensus 198 ~~~~~~~~~~~l~-~L~~~~ll~~~ 221 (698)
... +++.++ .|++.+|++..
T Consensus 290 ~~~----~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 290 RDT----IEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred cch----HHHHhhHHHHHcCCcccC
Confidence 122 233344 68889999643
No 71
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.51 E-value=0.47 Score=48.21 Aligned_cols=157 Identities=16% Similarity=0.089 Sum_probs=83.3
Q ss_pred CcEEEEEeCchHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHH
Q 005407 40 GSRILVTTRKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSL 119 (698)
Q Consensus 40 gs~IiiTTR~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~ 119 (698)
.+-|..||+...+....-..-..++++++++.++..+++.+.+...... .. .+....|++.|+|.|-.+..++..
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~---~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE--IE---PEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC--cC---HHHHHHHHHHhCCCcchHHHHHHH
Confidence 4556667776544332111102368999999999999999887543322 11 246678999999999666555543
Q ss_pred hcccCCHHHHHHHHhhhhcccc-cccccchhhHhhhccCCChhHHHHHh-hhcCCCCCCccCHHHHHHHHHhcCccccCC
Q 005407 120 LRFKRKIEEWQRVLESELWELE-EVDKGLLGPLLLSYRDLPPPLKKCFL-YCAIFPKDSMLEKDKLIRLWMAQDYLKVKG 197 (698)
Q Consensus 120 L~~~~~~~~w~~~l~~~~~~~~-~~~~~i~~~l~~sy~~L~~~~k~~fl-~~a~fp~~~~i~~~~Li~~wi~eg~~~~~~ 197 (698)
+ |..+......... +.-......+...|..++.+.+..+. ..+.+..+ .+..+.+.... |
T Consensus 205 ~--------~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g------ 266 (305)
T TIGR00635 205 V--------RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G------ 266 (305)
T ss_pred H--------HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C------
Confidence 2 2111100000000 00011222255678888888777665 44555432 34443322221 1
Q ss_pred CccHHHHHHHHHH-HHHhCCCcccc
Q 005407 198 REDMEVVGEEYFE-SLAMHSLFQDF 221 (698)
Q Consensus 198 ~~~~~~~~~~~l~-~L~~~~ll~~~ 221 (698)
.. ...++..++ .|++++|++..
T Consensus 267 -~~-~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 267 -ED-ADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred -CC-cchHHHhhhHHHHHcCCcccC
Confidence 01 122444456 69999999643
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.50 E-value=0.017 Score=32.28 Aligned_cols=21 Identities=38% Similarity=0.697 Sum_probs=15.1
Q ss_pred CCcEeeccCCCCCcccchhhhc
Q 005407 365 NLQTLDVSGCDNLKRLPERIGE 386 (698)
Q Consensus 365 ~L~~L~l~~~~~l~~lp~~i~~ 386 (698)
+|++||+++|. ++.+|+++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 57788888874 6677776654
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.18 E-value=0.0072 Score=57.37 Aligned_cols=58 Identities=22% Similarity=0.258 Sum_probs=26.4
Q ss_pred cccCccceeeeCC--CCcccchhhcccccCceEeccccccccccch--hhhcCCCCcEeeccCC
Q 005407 315 FDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPE--ALCELCNLQTLDVSGC 374 (698)
Q Consensus 315 ~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~--~~~~l~~L~~L~l~~~ 374 (698)
..+|+.|.+|.++ .+..|. .+..+.+|+.|.|+.|. |.++-+ -+.+|++|++|-|..|
T Consensus 37 c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccC
Confidence 3445555555444 333332 24455555555555554 443322 1334444454444443
No 74
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.08 E-value=3.4 Score=43.68 Aligned_cols=200 Identities=12% Similarity=0.053 Sum_probs=104.2
Q ss_pred CceEEEEEeCCCCCC----hhhHHHHHhhcCCCCCCcE--EEEEeCchHHHHHhC-----CCCccceeccCCChHhHHHH
Q 005407 9 GKKFFLVLDDVWTEE----PQNWERLWGCLRCGSKGSR--ILVTTRKVKVAIAIG-----TTKSNIIPIELLSDEDCWSI 77 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~----~~~~~~l~~~~~~~~~gs~--IiiTTR~~~v~~~~~-----~~~~~~~~v~~L~~~~a~~L 77 (698)
++..+||||+++.-. ...+..+...... .++++ ||.++.+..+..... ......+.+++++.++..++
T Consensus 137 ~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~i 215 (394)
T PRK00411 137 DRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDI 215 (394)
T ss_pred CCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHH
Confidence 456899999995421 1223333332222 23434 677776654433221 11123678999999999999
Q ss_pred HHHHhhccC-CchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhc--c--c---CCHHHHHHHHhhhhcccccccccchh
Q 005407 78 FSQVALSIR-SDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLR--F--K---RKIEEWQRVLESELWELEEVDKGLLG 149 (698)
Q Consensus 78 f~~~a~~~~-~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~--~--~---~~~~~w~~~l~~~~~~~~~~~~~i~~ 149 (698)
+..++-... ...-....++.+++.+....+..+.|+.++-.+.. . . -+.+..+.+++.. ...
T Consensus 216 l~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~----------~~~ 285 (394)
T PRK00411 216 LKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS----------EIV 285 (394)
T ss_pred HHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH----------HHH
Confidence 988763221 11012333444444444445668888877754321 1 1 1344554444432 112
Q ss_pred hHhhhccCCChhHHHHHhhhcCCCC--CCccCHHHHHHH--HHhcCccccCCCccHHHHHHHHHHHHHhCCCccccc
Q 005407 150 PLLLSYRDLPPPLKKCFLYCAIFPK--DSMLEKDKLIRL--WMAQDYLKVKGREDMEVVGEEYFESLAMHSLFQDFE 222 (698)
Q Consensus 150 ~l~~sy~~L~~~~k~~fl~~a~fp~--~~~i~~~~Li~~--wi~eg~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 222 (698)
...-.+..||.++|..+..++...+ ...+...++... .+++..-. ...+ ...-.+++..|.+.++|....
T Consensus 286 ~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~--~~~~-~~~~~~~l~~L~~~glI~~~~ 359 (394)
T PRK00411 286 HLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY--EPRT-HTRFYEYINKLDMLGIINTRY 359 (394)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC--CcCc-HHHHHHHHHHHHhcCCeEEEE
Confidence 2344678899988876655543221 123455444422 22221110 0011 123456889999999998653
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.03 E-value=0.0036 Score=56.64 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=17.3
Q ss_pred CCCccceeeeccCCCCCCCC-ccccCCCCcceEEEccCcc
Q 005407 625 IMPRLRHLSICWSPELKALP-DYILGSTSLDKLLIYYSRH 663 (698)
Q Consensus 625 ~~~~L~~L~l~~c~~L~~lp-~~~~~l~~L~~L~i~~C~~ 663 (698)
..|+|+.|+|++|+++++-- .++..+++|+.|.|++.|.
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 34455555555555444321 1223345555555555443
No 76
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.85 E-value=0.062 Score=48.90 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=34.7
Q ss_pred cCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhc-cccCCceecCCc
Q 005407 341 HLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGE-LINLRHLMNSRQ 398 (698)
Q Consensus 341 ~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~-l~~L~~L~l~~~ 398 (698)
+...+||++|. +..++. +..+.+|.+|.+.+|. +..+-+.+.. +++|..|.+.+|
T Consensus 43 ~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccceecccccc-hhhccc-CCCccccceEEecCCc-ceeeccchhhhccccceEEecCc
Confidence 44556777776 666655 6667777777777765 5555555543 445777777666
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.67 E-value=0.038 Score=52.44 Aligned_cols=91 Identities=19% Similarity=0.141 Sum_probs=50.8
Q ss_pred cccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCC--CCchhccccCccEEEEcCCCCCC-cCC-
Q 005407 470 KSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPP--TSNWMLSLTKLRVLTLRHCFLCE-CLP- 545 (698)
Q Consensus 470 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~p~~~~~l~~L~~L~L~~c~~~~-~l~- 545 (698)
.+-.+|+.+.+..+++..-....-.+..+..+.+|+.|++.++..+...+ +...++.-+.|+.|.+.+|-... ...
T Consensus 182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~ 261 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKS 261 (388)
T ss_pred HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHH
Confidence 33356777777777755432233344455567788888888876543210 00112234568999999995332 111
Q ss_pred ---CC--CCCCCcceeeccC
Q 005407 546 ---CL--GKLPCLETLTLEG 560 (698)
Q Consensus 546 ---~l--~~L~~L~~L~L~~ 560 (698)
.+ -..|+|..|....
T Consensus 262 v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 262 VLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred HHHHhhhhcCCCccccccch
Confidence 11 1356777776654
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.41 E-value=0.011 Score=53.71 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=10.8
Q ss_pred CCCcceEEEccCcccccc
Q 005407 650 STSLDKLLIYYSRHLNNR 667 (698)
Q Consensus 650 l~~L~~L~i~~C~~l~~~ 667 (698)
.++|+.|+|++||.+++.
T Consensus 150 ~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDG 167 (221)
T ss_pred ccchheeeccCCCeechh
Confidence 456666666666665553
No 79
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.23 E-value=0.43 Score=46.11 Aligned_cols=103 Identities=16% Similarity=0.159 Sum_probs=52.3
Q ss_pred CceEEEEEeCCCCCC------hhhHHHHHhhcCC--CCCCcEEEEEeCchHHHHHh-C-----CCCccceeccCCChHhH
Q 005407 9 GKKFFLVLDDVWTEE------PQNWERLWGCLRC--GSKGSRILVTTRKVKVAIAI-G-----TTKSNIIPIELLSDEDC 74 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~------~~~~~~l~~~~~~--~~~gs~IiiTTR~~~v~~~~-~-----~~~~~~~~v~~L~~~~a 74 (698)
+++++||+||+-.-. ..-...+...+.. ....-.+|+++....+.... . ......+.+++++.+++
T Consensus 117 ~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~ 196 (234)
T PF01637_consen 117 GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEA 196 (234)
T ss_dssp HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHH
T ss_pred CCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHH
Confidence 355999999993221 1111222222222 12333455666655555431 0 01123599999999999
Q ss_pred HHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHH
Q 005407 75 WSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKT 115 (698)
Q Consensus 75 ~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 115 (698)
++++...+-.. .. . +.-++...+|...++|.|..|.-
T Consensus 197 ~~~~~~~~~~~-~~--~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 197 REFLKELFKEL-IK--L-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHCC----------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHh-hc--c-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 99999865333 11 1 11134568899999999987753
No 80
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.20 E-value=0.1 Score=47.49 Aligned_cols=65 Identities=26% Similarity=0.184 Sum_probs=46.1
Q ss_pred ccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCC--CcCCCCCCCCCcceeeccCCc
Q 005407 496 ECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLC--ECLPCLGKLPCLETLTLEGMT 562 (698)
Q Consensus 496 ~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~--~~l~~l~~L~~L~~L~L~~c~ 562 (698)
..+..++.|..|.+..+....+. |.--..+++|..|.|.+|... .++..+..+|.|++|.+-+.+
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~I~--p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITRID--PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred ccCCCccccceEEecCCcceeec--cchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 44566677888888777777764 333335678888888888644 355667778888888888765
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.94 E-value=0.058 Score=27.86 Aligned_cols=16 Identities=44% Similarity=0.628 Sum_probs=6.5
Q ss_pred cCceEeccccccccccc
Q 005407 341 HLRYLALGWNPWIKELP 357 (698)
Q Consensus 341 ~L~~L~L~~~~~l~~lp 357 (698)
+|+.|++++|. ++++|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45555555555 55444
No 82
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.66 E-value=1.3 Score=49.47 Aligned_cols=203 Identities=18% Similarity=0.210 Sum_probs=118.9
Q ss_pred CceEEEEEeCCCCCChhhH-HHHHhhcCCCCCCcEEEEEeCchHHHHH--hCCCCccceecc----CCChHhHHHHHHHH
Q 005407 9 GKKFFLVLDDVWTEEPQNW-ERLWGCLRCGSKGSRILVTTRKVKVAIA--IGTTKSNIIPIE----LLSDEDCWSIFSQV 81 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~-~~l~~~~~~~~~gs~IiiTTR~~~v~~~--~~~~~~~~~~v~----~L~~~~a~~Lf~~~ 81 (698)
.+...+||||----..... ..+...+....++=..|||||..--... +-.. +...++. .++.+|+-++|...
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr-~~llEi~~~~Lrf~~eE~~~fl~~~ 206 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLR-DELLEIGSEELRFDTEEAAAFLNDR 206 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeeh-hhHHhcChHhhcCChHHHHHHHHHc
Confidence 3578999999732221122 2232333344556789999998543221 1111 2244444 37899999999876
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcccCCHHHHHHHHhhhhcccccccccchhh-HhhhccCCCh
Q 005407 82 ALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLRFKRKIEEWQRVLESELWELEEVDKGLLGP-LLLSYRDLPP 160 (698)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~-l~~sy~~L~~ 160 (698)
....-+ ..-++.+.+..+|.+-|+..++=+++...+.+.--..+. +..+.+..- ..--+|.||+
T Consensus 207 ~~l~Ld--------~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls-------G~~~~l~dYL~eeVld~Lp~ 271 (894)
T COG2909 207 GSLPLD--------AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS-------GAASHLSDYLVEEVLDRLPP 271 (894)
T ss_pred CCCCCC--------hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc-------chHHHHHHHHHHHHHhcCCH
Confidence 422111 124778999999999999999988874444332222111 111112221 2234688999
Q ss_pred hHHHHHhhhcCCCCCCccCHHHHHHHHHhcCccccCCCccHHHHHHHHHHHHHhCCCcccccccCCCCeeEEEEEechhH
Q 005407 161 PLKKCFLYCAIFPKDSMLEKDKLIRLWMAQDYLKVKGREDMEVVGEEYFESLAMHSLFQDFERSEHDGRKIIRCKMHDIV 240 (698)
Q Consensus 161 ~~k~~fl~~a~fp~~~~i~~~~Li~~wi~eg~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~~hdlv 240 (698)
++|..++-+|++..-. +.|+....+ ++-|..++++|..++++-.--++... .++.|.++
T Consensus 272 ~l~~FLl~~svl~~f~----~eL~~~Ltg------------~~ng~amLe~L~~~gLFl~~Ldd~~~-----WfryH~LF 330 (894)
T COG2909 272 ELRDFLLQTSVLSRFN----DELCNALTG------------EENGQAMLEELERRGLFLQRLDDEGQ-----WFRYHHLF 330 (894)
T ss_pred HHHHHHHHHHhHHHhh----HHHHHHHhc------------CCcHHHHHHHHHhCCCceeeecCCCc-----eeehhHHH
Confidence 9999999999875421 222222111 23366778999999987433222222 78899999
Q ss_pred HHHHHHhc
Q 005407 241 HDFSQFLT 248 (698)
Q Consensus 241 ~~~~~~~~ 248 (698)
.+|-+.--
T Consensus 331 aeFL~~r~ 338 (894)
T COG2909 331 AEFLRQRL 338 (894)
T ss_pred HHHHHhhh
Confidence 99876543
No 83
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.26 E-value=0.086 Score=50.05 Aligned_cols=81 Identities=20% Similarity=0.184 Sum_probs=52.3
Q ss_pred cccccCceEeccccccccccchhhhcCCCCcEeeccCC--CCCcccchhhhccccCCceecCCccCCCcCCcCCC---CC
Q 005407 337 KKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGC--DNLKRLPERIGELINLRHLMNSRQDDSSYMPRGME---RL 411 (698)
Q Consensus 337 ~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~--~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~---~L 411 (698)
-.+..|+.|++.++. ++.+-. +-.|++|++|.++.| +....++--...+++|++|++++|. ++. ++.+. .+
T Consensus 40 d~~~~le~ls~~n~g-ltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l 115 (260)
T KOG2739|consen 40 DEFVELELLSVINVG-LTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKEL 115 (260)
T ss_pred ccccchhhhhhhccc-eeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhh
Confidence 345566667776665 544433 556889999999998 5445666556777999999999983 332 44433 34
Q ss_pred CCCCccCcee
Q 005407 412 TSLRTLGSFV 421 (698)
Q Consensus 412 ~~L~~L~~~~ 421 (698)
.+|..|++++
T Consensus 116 ~nL~~Ldl~n 125 (260)
T KOG2739|consen 116 ENLKSLDLFN 125 (260)
T ss_pred cchhhhhccc
Confidence 4444555443
No 84
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.18 E-value=0.018 Score=54.77 Aligned_cols=66 Identities=24% Similarity=0.216 Sum_probs=49.3
Q ss_pred hcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccch--hhhccccCCceecCCccCCCcC
Q 005407 336 IKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPE--RIGELINLRHLMNSRQDDSSYM 404 (698)
Q Consensus 336 i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~ 404 (698)
..+++.|++|.|+-|+ |..|-. +..|++|+.|.|+.|. +..+-+ -+.++++|+.|-+..|.....-
T Consensus 37 c~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~a 104 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGEA 104 (388)
T ss_pred HHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCccccc
Confidence 4578889999999998 888866 8889999999998876 665533 2466777788777766554433
No 85
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.72 E-value=0.11 Score=26.76 Aligned_cols=17 Identities=41% Similarity=0.724 Sum_probs=8.4
Q ss_pred CccceeeeccCCCCCCCC
Q 005407 627 PRLRHLSICWSPELKALP 644 (698)
Q Consensus 627 ~~L~~L~l~~c~~L~~lp 644 (698)
++|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 456677777764 66554
No 86
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.64 E-value=1.1 Score=46.56 Aligned_cols=99 Identities=12% Similarity=0.080 Sum_probs=65.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchH-HHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVK-VAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++.++|+||+-..+......+...+..-..++.+|++|.+.+ +...+.. .-..+.+.+++.++..+++...... .
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~S-Rc~~i~l~~l~~~~i~~~L~~~~~~--~ 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRS-RCRKLRLRPLAPEDVIDALAAAGPD--L 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhc-cceEEECCCCCHHHHHHHHHHhccc--C
Confidence 5667899999966666666666666655445667777777653 3333221 1348999999999999999875321 1
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVKTLG 117 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~~~g 117 (698)
.. +....++..++|.|.....+.
T Consensus 217 ----~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 217 ----PD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred ----CH---HHHHHHHHHcCCCHHHHHHHh
Confidence 11 122678999999998665554
No 87
>PRK09087 hypothetical protein; Validated
Probab=91.03 E-value=3.1 Score=40.00 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=59.0
Q ss_pred EEEEEeCCCC--CChhhHHHHHhhcCCCCCCcEEEEEeC---------chHHHHHhCCCCccceeccCCChHhHHHHHHH
Q 005407 12 FFLVLDDVWT--EEPQNWERLWGCLRCGSKGSRILVTTR---------KVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQ 80 (698)
Q Consensus 12 ~LlVLDdvw~--~~~~~~~~l~~~~~~~~~gs~IiiTTR---------~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~ 80 (698)
-+|++||+-. .++.++-.+..... ..|..||+|++ ..++..++... .+++++++++++-.+++.+
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~g--l~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA--TVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCC--ceeecCCCCHHHHHHHHHH
Confidence 3788899932 12333333333332 23567999887 34455555553 3899999999999999998
Q ss_pred HhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHH
Q 005407 81 VALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKT 115 (698)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 115 (698)
++-...-. .. +++..-|++++.|-.-++..
T Consensus 165 ~~~~~~~~--l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 165 LFADRQLY--VD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHcCCC--CC---HHHHHHHHHHhhhhHHHHHH
Confidence 87543221 11 34566677777766655553
No 88
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.02 E-value=1 Score=41.97 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=62.5
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCch-HHHHHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKV-KVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.+.+-++|+||+-......++.+...+....+.+.+|++|++. .+....... ...+++.+++.++..+.+... +
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr-~~~~~~~~~~~~~~~~~l~~~--g-- 168 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSR-CQVLPFPPLSEEALLQWLIRQ--G-- 168 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhh-cEEeeCCCCCHHHHHHHHHHc--C--
Confidence 3566789999995545555677777776655667777777653 333322211 348999999999988888776 1
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPL 111 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPL 111 (698)
-+ .+.+..+++.++|.|.
T Consensus 169 i~-------~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 IS-------EEAAELLLALAGGSPG 186 (188)
T ss_pred CC-------HHHHHHHHHHcCCCcc
Confidence 11 2457889999999874
No 89
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.35 E-value=1.6 Score=41.93 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=60.7
Q ss_pred EEEEEeCCCCCChh-hH-HHHHhhcCC-CCCCcEEEEEeCch---------HHHHHhCCCCccceeccCCChHhHHHHHH
Q 005407 12 FFLVLDDVWTEEPQ-NW-ERLWGCLRC-GSKGSRILVTTRKV---------KVAIAIGTTKSNIIPIELLSDEDCWSIFS 79 (698)
Q Consensus 12 ~LlVLDdvw~~~~~-~~-~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~ 79 (698)
-+||+||+..-... .| +.+...+.. ...+.+||+||+.. .+...+.. ...+++.++++++...++.
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~--~~~i~l~~l~~~e~~~~l~ 169 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAW--GLVFQLPPLSDEEKIAALQ 169 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhc--CeeEecCCCCHHHHHHHHH
Confidence 38999999543221 33 334333322 12334789988752 22333322 2379999999999999988
Q ss_pred HHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 005407 80 QVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLL 120 (698)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L 120 (698)
..+-..... .. .+..+.+++.+.|.|..+..+-..+
T Consensus 170 ~~~~~~~~~--~~---~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 170 SRAARRGLQ--LP---DEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHHHcCCC--CC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 765432221 11 2456777788999888777665443
No 90
>PF13173 AAA_14: AAA domain
Probab=89.51 E-value=0.66 Score=40.01 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=43.8
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchHHHHHhC----CCCccceeccCCChHh
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKVAIAIG----TTKSNIIPIELLSDED 73 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~----~~~~~~~~v~~L~~~~ 73 (698)
..++.+|++|+|- ...+|......+-+..+..+||+|+.+......-. ......+++.||+-.|
T Consensus 59 ~~~~~~i~iDEiq--~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 59 KPGKKYIFIDEIQ--YLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred ccCCcEEEEehhh--hhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 3467899999994 34567776665555556679999999887774311 1112467888988766
No 91
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.60 E-value=0.03 Score=51.89 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=43.4
Q ss_pred cCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCcee
Q 005407 317 RLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLM 394 (698)
Q Consensus 317 ~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~ 394 (698)
.++...+||++ .+..+-..++.+..|..|+++.+. +.-+|.+++.+..++.+++.+|. ....|.+.+.++.+++++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhh
Confidence 34444455554 233333445555555556666555 55666666655556666555543 555566666666666555
Q ss_pred cCCc
Q 005407 395 NSRQ 398 (698)
Q Consensus 395 l~~~ 398 (698)
..++
T Consensus 118 ~k~~ 121 (326)
T KOG0473|consen 118 QKKT 121 (326)
T ss_pred hccC
Confidence 5544
No 92
>PRK13342 recombination factor protein RarA; Reviewed
Probab=88.56 E-value=5.3 Score=42.48 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=64.0
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEE--EeCchH--HHHHhCCCCccceeccCCChHhHHHHHHHHhh
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILV--TTRKVK--VAIAIGTTKSNIIPIELLSDEDCWSIFSQVAL 83 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~--v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~ 83 (698)
.+++.+|++|++|.-...+.+.+...+.. |..++| ||.+.. +....... ..++++.+++.++.++++.+.+.
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR-~~~~~~~~ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSR-AQVFELKPLSEEDIEQLLKRALE 165 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhcc-ceeeEeCCCCHHHHHHHHHHHHH
Confidence 35788999999987665666666655543 445555 344432 21111111 23799999999999999988653
Q ss_pred ccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHH
Q 005407 84 SIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGS 118 (698)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~ 118 (698)
...... ..--.+....+++.|+|-+..+..+-.
T Consensus 166 ~~~~~~--i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 166 DKERGL--VELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HhhcCC--CCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 311110 011134567889999999876655443
No 93
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=88.37 E-value=3.7 Score=42.35 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=64.7
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEe-CchHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTT-RKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.+++-++|+|++...+......+...+.....+..+|++| +-..+....-.. -..+++.+++.++..+++...+....
T Consensus 139 ~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSR-c~~i~l~pl~~~~~~~~L~~~~~~~~ 217 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSR-CQPISLKPLDDDELKKALSHLGSSQG 217 (351)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhh-ccEEEecCCCHHHHHHHHHHhhcccC
Confidence 3567789999996656556666666555444445555544 444444333221 24899999999999999987432211
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChHHHHHHH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPLAVKTLG 117 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g 117 (698)
. -.+....+++.++|.|.....+.
T Consensus 218 ~-------~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 218 S-------DGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred C-------CHHHHHHHHHHcCCCHHHHHHHH
Confidence 0 02346788999999998655544
No 94
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=88.15 E-value=1.1 Score=49.95 Aligned_cols=113 Identities=19% Similarity=0.119 Sum_probs=71.5
Q ss_pred hhhhhcCCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEE--EeCchHHH-HHhCCCCccceeccCCChHhHHHHH
Q 005407 2 QLHESIEGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILV--TTRKVKVA-IAIGTTKSNIIPIELLSDEDCWSIF 78 (698)
Q Consensus 2 ~l~~~L~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~-~~~~~~~~~~~~v~~L~~~~a~~Lf 78 (698)
++.+.++.+++.++-|+.|..+...|+.+...+....+...|+| ||++.... ...... -..+.+.+++.+|.++++
T Consensus 284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR-~~~i~~~pls~edi~~Il 362 (615)
T TIGR02903 284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSR-CAEVFFEPLTPEDIALIV 362 (615)
T ss_pred HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhc-eeEEEeCCCCHHHHHHHH
Confidence 46677788888888888887776778888766666666655666 66654321 111111 125788999999999999
Q ss_pred HHHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 005407 79 SQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLL 120 (698)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L 120 (698)
.+.+-..... .. .++...|++++..-+-|+..++...
T Consensus 363 ~~~a~~~~v~--ls---~eal~~L~~ys~~gRraln~L~~~~ 399 (615)
T TIGR02903 363 LNAAEKINVH--LA---AGVEELIARYTIEGRKAVNILADVY 399 (615)
T ss_pred HHHHHHcCCC--CC---HHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 9876532211 11 2345556666655567777666553
No 95
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=87.85 E-value=4.3 Score=43.99 Aligned_cols=98 Identities=17% Similarity=0.170 Sum_probs=66.8
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEE-EeCchHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILV-TTRKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~Iii-TTR~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.+++-++|+|+++.-....|..+...+....+.+++|+ ||+...+....... ...+++.+++.++..+.+...+...+
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SR-c~~~ef~~ls~~el~~~L~~i~~~eg 204 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISR-CQRYDLRRLSFEEIFKLLEYITKQEN 204 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhc-ceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45677899999987767778888777666555666654 55555555443221 23799999999999999998875443
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPL 111 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPL 111 (698)
.... .+....|++.++|-+-
T Consensus 205 i~ie-----~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 205 LKTD-----IEALRIIAYKSEGSAR 224 (507)
T ss_pred CCCC-----HHHHHHHHHHcCCCHH
Confidence 3211 2345668888888653
No 96
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=87.52 E-value=2.8 Score=42.68 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=64.6
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchHHH-HHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKVA-IAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++-++|+||+.......+..+...+..-.+++.+|++|.+.+.. ..+... ..++++.+++.++..+.+.+... ...
T Consensus 92 ~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR-c~~~~~~~~~~~~~~~~l~~~~~-~~~ 169 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR-CQIYKLNRLSKEEIEKFISYKYN-DIK 169 (313)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh-ceeeeCCCcCHHHHHHHHHHHhc-CCC
Confidence 455566777775455667888888887777889999998765432 222111 23799999999998877765431 111
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVKTL 116 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~~~ 116 (698)
.+.+..++.+++|.|..+...
T Consensus 170 --------~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 170 --------EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred --------HHHHHHHHHHcCCCHHHHHHH
Confidence 123667899999988655433
No 97
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.49 E-value=0.024 Score=52.44 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=58.3
Q ss_pred ccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCC
Q 005407 287 FVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELC 364 (698)
Q Consensus 287 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~ 364 (698)
.+..+...+.|+++.+..-. .-..|+.+..|..|+++ .+..+|..++.+..++.+++..|. ...+|.+.+.++
T Consensus 37 ei~~~kr~tvld~~s~r~vn----~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN----LGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEP 111 (326)
T ss_pred hhhccceeeeehhhhhHHHh----hccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccC
Confidence 34556667777777653211 22235566667777777 677778888888888888877776 788888888888
Q ss_pred CCcEeeccCCC
Q 005407 365 NLQTLDVSGCD 375 (698)
Q Consensus 365 ~L~~L~l~~~~ 375 (698)
+++++++.++.
T Consensus 112 ~~k~~e~k~~~ 122 (326)
T KOG0473|consen 112 HPKKNEQKKTE 122 (326)
T ss_pred CcchhhhccCc
Confidence 88888887765
No 98
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.94 E-value=0.51 Score=27.44 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=10.8
Q ss_pred ccCceEeccccccccccchh
Q 005407 340 IHLRYLALGWNPWIKELPEA 359 (698)
Q Consensus 340 ~~L~~L~L~~~~~l~~lp~~ 359 (698)
.+|++|+|++|. +..+|..
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 455666666665 5555543
No 99
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.94 E-value=0.51 Score=27.44 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=10.8
Q ss_pred ccCceEeccccccccccchh
Q 005407 340 IHLRYLALGWNPWIKELPEA 359 (698)
Q Consensus 340 ~~L~~L~L~~~~~l~~lp~~ 359 (698)
.+|++|+|++|. +..+|..
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 455666666665 5555543
No 100
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=85.87 E-value=47 Score=34.52 Aligned_cols=201 Identities=14% Similarity=0.071 Sum_probs=98.3
Q ss_pred CceEEEEEeCCCCCC---hhhHHHHHhhc-CCCC--CCcEEEEEeCchHHHHHhC-----CCCccceeccCCChHhHHHH
Q 005407 9 GKKFFLVLDDVWTEE---PQNWERLWGCL-RCGS--KGSRILVTTRKVKVAIAIG-----TTKSNIIPIELLSDEDCWSI 77 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~---~~~~~~l~~~~-~~~~--~gs~IiiTTR~~~v~~~~~-----~~~~~~~~v~~L~~~~a~~L 77 (698)
+++++||||+++.-. ......+.... .... ..-.+|.+|........+. ......+.+++.+.++..++
T Consensus 128 ~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~i 207 (365)
T TIGR02928 128 GDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDI 207 (365)
T ss_pred CCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHH
Confidence 567899999994431 11122222210 0111 2234555555443322111 11123688999999999999
Q ss_pred HHHHhhccCCchhhhhHHHHHHHHHHHHhCCCh-HHHHHHHHHh--c--c---cCCHHHHHHHHhhhhcccccccccchh
Q 005407 78 FSQVALSIRSDIEEYKKFENIGRQIIGKCKGLP-LAVKTLGSLL--R--F---KRKIEEWQRVLESELWELEEVDKGLLG 149 (698)
Q Consensus 78 f~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lal~~~g~~L--~--~---~~~~~~w~~~l~~~~~~~~~~~~~i~~ 149 (698)
+..++-.........++..+.+.+++....|.| .|+.++-.+. + . .-+.+..+.+.... -..
T Consensus 208 l~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~----------~~~ 277 (365)
T TIGR02928 208 LENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI----------EKD 277 (365)
T ss_pred HHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------HHH
Confidence 988864211110112233344555677777887 4444433222 1 0 11233333333321 012
Q ss_pred hHhhhccCCChhHHHHHhhhcCCC--CCCccCHHHHHHHH--HhcCccccCCCccHHHHHHHHHHHHHhCCCccccc
Q 005407 150 PLLLSYRDLPPPLKKCFLYCAIFP--KDSMLEKDKLIRLW--MAQDYLKVKGREDMEVVGEEYFESLAMHSLFQDFE 222 (698)
Q Consensus 150 ~l~~sy~~L~~~~k~~fl~~a~fp--~~~~i~~~~Li~~w--i~eg~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 222 (698)
...-+...||.++|..+..++..- .+..+...++...+ +++.+ . .. ........+++..|.+.+++....
T Consensus 278 ~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~-~-~~-~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 278 RLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI-G-VD-PLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc-C-CC-CCcHHHHHHHHHHHHhcCCeEEEE
Confidence 233456788888886655544211 33345555555422 12211 1 01 112345667788999999998653
No 101
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.94 E-value=6.9 Score=42.58 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=68.4
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++-++|+|+++......+..+...+....+...+|++|.. ..+...+... ...+++.+++.++..+.+.+.+...+.
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR-c~~~~f~~ls~~el~~~L~~i~~~egi 193 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR-TQHFRFRRLTEEEIAGKLRRLLEAEGR 193 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc-eEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 46668999999776666777887777665555566655543 4443322211 237999999999999999988754433
Q ss_pred chhhhhHHHHHHHHHHHHhCCChH-HHHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPL-AVKTLGS 118 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPL-al~~~g~ 118 (698)
.. -.+....|++.++|.+- |+..+-.
T Consensus 194 ~i-----~~~Al~~ia~~s~GdlR~aln~Lek 220 (504)
T PRK14963 194 EA-----EPEALQLVARLADGAMRDAESLLER 220 (504)
T ss_pred CC-----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 21 12457788999999774 4433333
No 102
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.68 E-value=8.8 Score=39.97 Aligned_cols=98 Identities=14% Similarity=0.184 Sum_probs=63.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCch-HHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKV-KVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++-++|+|++.......++.+...+.......++|++|.+. .+....... ...+++.+++.++..+.+...+...+.
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SR-c~~~~~~~l~~~el~~~L~~~~~~~g~ 196 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSR-CLQFKLKIISEEKIFNFLKYILIKESI 196 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhh-ceEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 455689999995555445667766666555566777777553 343332211 237999999999998888876644332
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLA 112 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLa 112 (698)
.. . ++.+..|++.++|-|-.
T Consensus 197 ~i--~---~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 197 DT--D---EYALKLIAYHAHGSMRD 216 (363)
T ss_pred CC--C---HHHHHHHHHHcCCCHHH
Confidence 11 1 23567788899997753
No 103
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=84.45 E-value=3.6 Score=40.46 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=67.8
Q ss_pred EEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchH-HHHHhCCCCccceeccCCChHhHHHHHHHHhhccCCchh
Q 005407 12 FFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVK-VAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRSDIE 90 (698)
Q Consensus 12 ~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~ 90 (698)
-.+|||++.....+.|..+..........+|.|+.+..-. +-.... ..-.-|.-++|.+++..+-+...|-..+.+..
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~-SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d 209 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV-SRCQKFRFKKLKDEDIVDRLEKIASKEGVDID 209 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH-hhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC
Confidence 4688999988888899999888877776777666554432 221111 11226888999999999999888866554421
Q ss_pred hhhHHHHHHHHHHHHhCC-ChHHHHHHH
Q 005407 91 EYKKFENIGRQIIGKCKG-LPLAVKTLG 117 (698)
Q Consensus 91 ~~~~~~~~~~~i~~~c~G-lPLal~~~g 117 (698)
++..+.|+++++| |--|+.++-
T Consensus 210 -----~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 210 -----DDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred -----HHHHHHHHHHcCCcHHHHHHHHH
Confidence 3467788999987 344444443
No 104
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=84.10 E-value=8.6 Score=39.55 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=60.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCch-HHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKV-KVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+.+-+||+||+-.-.......+...+....+.+++|+||... .+....... ...+++.+++.++..+.+...+...+.
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr-~~~v~~~~~~~~~~~~~l~~~~~~~~~ 202 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSR-CLPLFFRAPTDDELVDVLESIAEAEGV 202 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCC-ceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 344589999994433333444555444444556788887543 222222221 247888999999998888887654332
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVK 114 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~ 114 (698)
.. . .+....+++.++|.+-.+.
T Consensus 203 ~~--~---~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 203 DY--D---DDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CC--C---HHHHHHHHHHcCCCHHHHH
Confidence 21 1 2467778888888655443
No 105
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.66 E-value=0.96 Score=26.23 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=14.7
Q ss_pred CCCCcEeeccCCCCCcccchhh
Q 005407 363 LCNLQTLDVSGCDNLKRLPERI 384 (698)
Q Consensus 363 l~~L~~L~l~~~~~l~~lp~~i 384 (698)
|++|++|+|.+|. +..+|.++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 4577788887775 77777654
No 106
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.66 E-value=0.96 Score=26.23 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=14.7
Q ss_pred CCCCcEeeccCCCCCcccchhh
Q 005407 363 LCNLQTLDVSGCDNLKRLPERI 384 (698)
Q Consensus 363 l~~L~~L~l~~~~~l~~lp~~i 384 (698)
|++|++|+|.+|. +..+|.++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 4577788887775 77777654
No 107
>PRK08727 hypothetical protein; Validated
Probab=83.49 E-value=7.7 Score=37.49 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=56.2
Q ss_pred EEEEEeCCCCCC-hhhHHH-HHhhcCC-CCCCcEEEEEeCc---------hHHHHHhCCCCccceeccCCChHhHHHHHH
Q 005407 12 FFLVLDDVWTEE-PQNWER-LWGCLRC-GSKGSRILVTTRK---------VKVAIAIGTTKSNIIPIELLSDEDCWSIFS 79 (698)
Q Consensus 12 ~LlVLDdvw~~~-~~~~~~-l~~~~~~-~~~gs~IiiTTR~---------~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~ 79 (698)
-+||+||+-... ...|+. +...+.. ..+|..||+|++. .++..++... .+++++++++++-.+++.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~--~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQC--IRIGLPVLDDVARAAVLR 172 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcC--ceEEecCCCHHHHHHHHH
Confidence 589999993211 123432 2222221 1245679999984 2333344332 379999999999999999
Q ss_pred HHhhccCCchhhhhHHHHHHHHHHHHhCCChHHH
Q 005407 80 QVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAV 113 (698)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal 113 (698)
++|...+-. .. ++...-+++++.|-.-++
T Consensus 173 ~~a~~~~l~--l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 173 ERAQRRGLA--LD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHcCCC--CC---HHHHHHHHHhCCCCHHHH
Confidence 887653221 11 245666777777654333
No 108
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.22 E-value=0.58 Score=27.23 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=12.9
Q ss_pred CCCcceEEEccCcccccc
Q 005407 650 STSLDKLLIYYSRHLNNR 667 (698)
Q Consensus 650 l~~L~~L~i~~C~~l~~~ 667 (698)
++.|+.|++++|+.+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 357777777888777664
No 109
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=80.58 E-value=9.2 Score=39.06 Aligned_cols=97 Identities=14% Similarity=0.150 Sum_probs=61.6
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCch-HHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCCc
Q 005407 10 KKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKV-KVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRSD 88 (698)
Q Consensus 10 kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~ 88 (698)
++-++|+|++..........+...+..-..++.+|+||.+. .+...+-.. -..+.+.+++.+++.+.+...... ..
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR-c~~~~~~~~~~~~~~~~L~~~~~~-~~- 182 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR-CQQQACPLPSNEESLQWLQQALPE-SD- 182 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh-ceeeeCCCcCHHHHHHHHHHhccc-CC-
Confidence 34444679996666666666665555544567777777774 444332211 237999999999999888765311 11
Q ss_pred hhhhhHHHHHHHHHHHHhCCChHHHHHH
Q 005407 89 IEEYKKFENIGRQIIGKCKGLPLAVKTL 116 (698)
Q Consensus 89 ~~~~~~~~~~~~~i~~~c~GlPLal~~~ 116 (698)
.+.+..++..++|-|.....+
T Consensus 183 -------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 -------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -------hHHHHHHHHHcCCCHHHHHHH
Confidence 123557788999999755444
No 110
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.97 E-value=3.4 Score=35.33 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=11.8
Q ss_pred cccCccEEEEcCCCCCCcCC--CCCCCCCcceeecc
Q 005407 526 SLTKLRVLTLRHCFLCECLP--CLGKLPCLETLTLE 559 (698)
Q Consensus 526 ~l~~L~~L~L~~c~~~~~l~--~l~~L~~L~~L~L~ 559 (698)
.+++|+.+.+.+. +..++ .+..+++|+.+.+.
T Consensus 33 ~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 33 NCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp T-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred ccccccccccccc--ccccceeeeeccccccccccc
Confidence 4445555555442 22222 34444455555553
No 111
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.34 E-value=4.8 Score=34.39 Aligned_cols=101 Identities=19% Similarity=0.330 Sum_probs=39.5
Q ss_pred ccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC-CCcccchh-hcccccCceEeccccccccccchh-hhcC
Q 005407 287 FVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP-PVRKIPKG-IKKLIHLRYLALGWNPWIKELPEA-LCEL 363 (698)
Q Consensus 287 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~-~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~-~~~l 363 (698)
.+.++++|+.+.+.... . ......|.++..|+.+.+. .+..++.. +..+..|+.+.+.. . +..++.. +..+
T Consensus 7 ~F~~~~~l~~i~~~~~~-~---~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~ 80 (129)
T PF13306_consen 7 AFYNCSNLESITFPNTI-K---KIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSNC 80 (129)
T ss_dssp TTTT-TT--EEEETST------EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT-
T ss_pred HHhCCCCCCEEEECCCe-e---EeChhhcccccccccccccccccccceeeeecccccccccccc-c-cccccccccccc
Confidence 44556666666665321 1 1112335555555555555 34444433 44555566666644 2 4444432 3446
Q ss_pred CCCcEeeccCCCCCcccchh-hhccccCCceecC
Q 005407 364 CNLQTLDVSGCDNLKRLPER-IGELINLRHLMNS 396 (698)
Q Consensus 364 ~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~ 396 (698)
.+|+.+++..+ +..++.. +.+. +|+.+.+.
T Consensus 81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 66666666431 3344332 3333 55555443
No 112
>COG3899 Predicted ATPase [General function prediction only]
Probab=78.77 E-value=21 Score=41.78 Aligned_cols=167 Identities=19% Similarity=0.204 Sum_probs=98.4
Q ss_pred CCceEEEEEeCC-CCCChhhHHHHHhhcCCCCC----CcEE--EEEeCch-HHHHHhCCCCccceeccCCChHhHHHHHH
Q 005407 8 EGKKFFLVLDDV-WTEEPQNWERLWGCLRCGSK----GSRI--LVTTRKV-KVAIAIGTTKSNIIPIELLSDEDCWSIFS 79 (698)
Q Consensus 8 ~~kr~LlVLDdv-w~~~~~~~~~l~~~~~~~~~----gs~I--iiTTR~~-~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~ 79 (698)
+.|+..+|+||+ |-| ....+-+......... ...| +.|.+.. ........ .-..+.+.||+..+.-.+..
T Consensus 152 ~~~plVi~leDlhWaD-~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~-~i~~I~L~PL~~~d~~~lV~ 229 (849)
T COG3899 152 EEHPLVIVLEDLHWAD-SASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSAT-NITTITLAPLSRADTNQLVA 229 (849)
T ss_pred ccCCeEEEEecccccC-hhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCC-ceeEEecCcCchhhHHHHHH
Confidence 456999999999 654 4444444332222110 1123 3333332 11111112 13589999999999999988
Q ss_pred HHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhccc------CCHHHHHHHHhhhhcccccccccchhhHhh
Q 005407 80 QVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLRFK------RKIEEWQRVLESELWELEEVDKGLLGPLLL 153 (698)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~ 153 (698)
........ .-.+....|+++.+|.|+-+.-+=.++... .+...|+.-... .... ..-+.+...+..
T Consensus 230 ~~l~~~~~------~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~-~~~~~vv~~l~~ 301 (849)
T COG3899 230 ATLGCTKL------LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGIL-ATTDAVVEFLAA 301 (849)
T ss_pred HHhCCccc------ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCc-hhhHHHHHHHHH
Confidence 66433222 123578899999999999999998888653 223344321111 0000 111224445777
Q ss_pred hccCCChhHHHHHhhhcCCCCCCccCHHHHHHH
Q 005407 154 SYRDLPPPLKKCFLYCAIFPKDSMLEKDKLIRL 186 (698)
Q Consensus 154 sy~~L~~~~k~~fl~~a~fp~~~~i~~~~Li~~ 186 (698)
-.+.||...|...-..||+...+ +.+-|-..
T Consensus 302 rl~kL~~~t~~Vl~~AA~iG~~F--~l~~La~l 332 (849)
T COG3899 302 RLQKLPGTTREVLKAAACIGNRF--DLDTLAAL 332 (849)
T ss_pred HHhcCCHHHHHHHHHHHHhCccC--CHHHHHHH
Confidence 78999999999999999986555 44444433
No 113
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=78.14 E-value=11 Score=39.48 Aligned_cols=97 Identities=13% Similarity=0.089 Sum_probs=61.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCch-HHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKV-KVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++-++|+|++..........+...+....++..+|++|.+. .+...+-.. -..+.+.+++.++..+.+..... .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSR-c~~i~f~~~~~~~i~~~L~~~~~---~ 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSR-CRHVALRTPSVEAVAEVLVRRDG---V 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhh-CeEEECCCCCHHHHHHHHHHhcC---C
Confidence 455578889995555555555655555555566677766663 444332211 24799999999999888874321 1
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVKTL 116 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~~~ 116 (698)
+ .+.+..++..++|-|.....+
T Consensus 192 ~-------~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 192 D-------PETARRAARASQGHIGRARRL 213 (394)
T ss_pred C-------HHHHHHHHHHcCCCHHHHHHH
Confidence 1 234678899999998654444
No 114
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.12 E-value=14 Score=40.94 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=68.7
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.+++-+||+|++.......+..+...+..-.....+|++|.+ ..+...+... -..+++.+++.++..+.+...+....
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SR-cq~i~F~pLs~~eL~~~L~~il~~eg 195 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSR-CQHFTFTRLSEAGLEAHLTKVLGREG 195 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhh-hhccccCCCCHHHHHHHHHHHHHHcC
Confidence 356678999999555555566776666544445566665554 4444332211 23789999999999988887765433
Q ss_pred CchhhhhHHHHHHHHHHHHhCCC-hHHHHHHHHHh
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGL-PLAVKTLGSLL 120 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~Gl-PLal~~~g~~L 120 (698)
..+ -.+.+..|++.++|- -.|+..+...+
T Consensus 196 i~i-----d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 196 VDY-----DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CCC-----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 211 124677788899985 56777776554
No 115
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=77.96 E-value=21 Score=36.94 Aligned_cols=103 Identities=14% Similarity=0.095 Sum_probs=64.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchH-HHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVK-VAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++-++|+|++..........+...+......+.+|++|.+.+ +...+... ...++..+++.++..+.+..++-..+.
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr-~~~~~~~~~~~~~l~~~l~~~~~~~g~ 194 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSR-CQRFDFKRIPLEDIVERLKKILDKEGI 194 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhh-eeEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4555889999843333455666666655455667777775544 33322211 236888999999988888887654332
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVKTLG 117 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~~~g 117 (698)
.. . .+.+..+++.++|-|..+...-
T Consensus 195 ~i--~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 195 KI--E---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CC--C---HHHHHHHHHHcCCChHHHHHHH
Confidence 21 1 2467778899999886554443
No 116
>PRK08084 DNA replication initiation factor; Provisional
Probab=77.59 E-value=20 Score=34.63 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=56.6
Q ss_pred EEEEeCCCCCC-hhhHHHH-HhhcCCC-CCC-cEEEEEeCch---------HHHHHhCCCCccceeccCCChHhHHHHHH
Q 005407 13 FLVLDDVWTEE-PQNWERL-WGCLRCG-SKG-SRILVTTRKV---------KVAIAIGTTKSNIIPIELLSDEDCWSIFS 79 (698)
Q Consensus 13 LlVLDdvw~~~-~~~~~~l-~~~~~~~-~~g-s~IiiTTR~~---------~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~ 79 (698)
+|++||+..-. ..+|+.. ...+... ..| .++|+||+.. ++..++... .+++++++++++-.+++.
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g--~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG--QIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC--ceeeecCCCHHHHHHHHH
Confidence 78999993211 1345432 2222211 123 3799999753 444555543 389999999999999988
Q ss_pred HHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHH
Q 005407 80 QVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKT 115 (698)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 115 (698)
++|....-. .. +++..-+++++.|-.-++..
T Consensus 178 ~~a~~~~~~--l~---~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 178 LRARLRGFE--LP---EDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred HHHHHcCCC--CC---HHHHHHHHHhhcCCHHHHHH
Confidence 876543221 11 34666677777765544433
No 117
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=77.46 E-value=15 Score=41.48 Aligned_cols=105 Identities=9% Similarity=0.092 Sum_probs=68.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchH-HHHHh-CCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVK-VAIAI-GTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
++.-++|+|+|.......|..+...+....+..++|+||++.+ +...+ .. -..++++.++.++..+.+.+.+-..+
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR--Cq~f~Fk~Ls~eeIv~~L~~Il~~Eg 195 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR--CLQFNLKQMPAGHIVSHLERILGEER 195 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh--eEEEecCCcCHHHHHHHHHHHHHHcC
Confidence 4556788999966555667777766666556778888777744 32221 22 23799999999999999888764332
Q ss_pred CchhhhhHHHHHHHHHHHHhCCCh-HHHHHHHHHh
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLP-LAVKTLGSLL 120 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlP-Lal~~~g~~L 120 (698)
... -.+....|++.++|-. -|+..+-..+
T Consensus 196 I~i-----d~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 196 IAF-----EPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred CCC-----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 210 1245677888998844 5655544433
No 118
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=76.07 E-value=45 Score=33.82 Aligned_cols=99 Identities=20% Similarity=0.189 Sum_probs=60.4
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
.+++-++|+|++-.........+...+..-.+.--|++|++-..+...+... ...+++.++++++..+.+.+.......
T Consensus 122 ~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SR-cq~i~f~~l~~~~~~~~L~~~~~~~~~ 200 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSR-CQIIPFYRLSDEQLEQVLKRLGDEEIL 200 (314)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhh-ceEEecCCCCHHHHHHHHHHhhccccc
Confidence 4667789999995444445555554444333333444444445555443322 348999999999999999876432111
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVKT 115 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~~ 115 (698)
+.....++..++|-|.....
T Consensus 201 --------~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 201 --------NINFPELLALAQGSPGAAIA 220 (314)
T ss_pred --------hhHHHHHHHHcCCCHHHHHH
Confidence 11135788999999965544
No 119
>PLN03025 replication factor C subunit; Provisional
Probab=74.97 E-value=11 Score=38.35 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=59.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCch-HHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKV-KVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
++.-++++|++..........+...+....+.+++|+++... .+....... ...++++++++++..+.+...+-..+.
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR-c~~i~f~~l~~~~l~~~L~~i~~~egi 176 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR-CAIVRFSRLSDQEILGRLMKVVEAEKV 176 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh-hhcccCCCCCHHHHHHHHHHHHHHcCC
Confidence 456789999995544444444544444445567787777542 221111110 126999999999999998887754333
Q ss_pred chhhhhHHHHHHHHHHHHhCCCh
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLP 110 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlP 110 (698)
... .+....+++.++|-.
T Consensus 177 ~i~-----~~~l~~i~~~~~gDl 194 (319)
T PLN03025 177 PYV-----PEGLEAIIFTADGDM 194 (319)
T ss_pred CCC-----HHHHHHHHHHcCCCH
Confidence 211 235677888888765
No 120
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=73.40 E-value=25 Score=33.71 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=57.7
Q ss_pred EEEEEeCCCCCChhhHHHHHhhcCCC-CCCc-EEEEEeCchHH--------HHHhCCCCccceeccCCChHhHHHHHHHH
Q 005407 12 FFLVLDDVWTEEPQNWERLWGCLRCG-SKGS-RILVTTRKVKV--------AIAIGTTKSNIIPIELLSDEDCWSIFSQV 81 (698)
Q Consensus 12 ~LlVLDdvw~~~~~~~~~l~~~~~~~-~~gs-~IiiTTR~~~v--------~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~ 81 (698)
-+||+||+-.-+...-+.+...+... ..|. .||+|++.... ...+.. ...+++.++++++-..++.+.
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~--~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGW--GLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhc--CeEEEecCCCHHHHHHHHHHH
Confidence 47889999332222223333333221 2344 36666654321 112222 237999999998877777655
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 005407 82 ALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLL 120 (698)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L 120 (698)
+-..... .. ++....+++.+.|.+..+..+-..+
T Consensus 170 ~~~~~v~--l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERGLQ--LA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcCCC--CC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4332221 11 2467778888999998888777665
No 121
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.29 E-value=24 Score=39.41 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=63.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCch-HHHHH-hCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKV-KVAIA-IGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~-~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
+++-++|+|+|-.........+...+.....+.++|++|.+. .+... ... ...+++++++.++..+.+.+.+-..+
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSR--Cq~feFkpLs~eEI~k~L~~Il~kEg 194 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR--CLQFTLRPLAVDEITKHLGAILEKEQ 194 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHh--hheeeccCCCHHHHHHHHHHHHHHcC
Confidence 566789999995545556666666665555566788777663 33222 122 23799999999999988887765433
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChHHH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPLAV 113 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPLal 113 (698)
... -.+....|++.++|-+-.+
T Consensus 195 I~i-----d~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 195 IAA-----DQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred CCC-----CHHHHHHHHHHcCCCHHHH
Confidence 221 1235677888898866433
No 122
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=73.29 E-value=21 Score=36.29 Aligned_cols=97 Identities=13% Similarity=0.087 Sum_probs=59.7
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCch-HHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCCc
Q 005407 10 KKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKV-KVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRSD 88 (698)
Q Consensus 10 kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~ 88 (698)
.+-+|++|++..-.......+...+....+.+++|+++... .+....... ...+++.+++.++....+...+...+..
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr-~~~~~~~~l~~~ei~~~l~~~~~~~~~~ 180 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR-CAVFRFSPLKKEAVAERLRYIAENEGIE 180 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH-hheeeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 45689999985444444556666555555566788777432 221111111 2268999999999988888877544332
Q ss_pred hhhhhHHHHHHHHHHHHhCCChHH
Q 005407 89 IEEYKKFENIGRQIIGKCKGLPLA 112 (698)
Q Consensus 89 ~~~~~~~~~~~~~i~~~c~GlPLa 112 (698)
.. .+....+++.++|-+--
T Consensus 181 i~-----~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 181 IT-----DDALEAIYYVSEGDMRK 199 (319)
T ss_pred CC-----HHHHHHHHHHcCCCHHH
Confidence 11 23567788889887654
No 123
>PRK05642 DNA replication initiation factor; Validated
Probab=72.07 E-value=26 Score=33.82 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=57.8
Q ss_pred EEEEeCCCCC-ChhhHHH-HHhhcCC-CCCCcEEEEEeCchH---------HHHHhCCCCccceeccCCChHhHHHHHHH
Q 005407 13 FLVLDDVWTE-EPQNWER-LWGCLRC-GSKGSRILVTTRKVK---------VAIAIGTTKSNIIPIELLSDEDCWSIFSQ 80 (698)
Q Consensus 13 LlVLDdvw~~-~~~~~~~-l~~~~~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~ 80 (698)
+||+||+-.. ...+|+. +...++. ...|..||+|++..- +..++.. ..+++++++++++-.++...
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~--gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTL--ALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhc--CeeeecCCCCHHHHHHHHHH
Confidence 6789999321 1134543 3333332 234667888887522 2222322 24799999999999999987
Q ss_pred HhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHH
Q 005407 81 VALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGS 118 (698)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~ 118 (698)
++....-. .+ +++..-+++++.|-.-++..+=.
T Consensus 178 ka~~~~~~--l~---~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 178 RASRRGLH--LT---DEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHcCCC--CC---HHHHHHHHHhcCCCHHHHHHHHH
Confidence 76543221 11 35666777777776554444433
No 124
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=70.59 E-value=19 Score=34.35 Aligned_cols=96 Identities=14% Similarity=0.155 Sum_probs=51.9
Q ss_pred EEEEEeCCCCCCh-hhHHH-HHhhcCC-CCCCcEEEEEeCc---------hHHHHHhCCCCccceeccCCChHhHHHHHH
Q 005407 12 FFLVLDDVWTEEP-QNWER-LWGCLRC-GSKGSRILVTTRK---------VKVAIAIGTTKSNIIPIELLSDEDCWSIFS 79 (698)
Q Consensus 12 ~LlVLDdvw~~~~-~~~~~-l~~~~~~-~~~gs~IiiTTR~---------~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~ 79 (698)
=+|++|||..-.. ..|+. +...++. ...|-+||+|++. .++..++.. ..+++++++++++-.+++.
T Consensus 99 DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~--Gl~~~l~~pd~~~r~~il~ 176 (219)
T PF00308_consen 99 DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSW--GLVVELQPPDDEDRRRILQ 176 (219)
T ss_dssp SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHC--SEEEEE----HHHHHHHHH
T ss_pred CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhh--cchhhcCCCCHHHHHHHHH
Confidence 3678999943221 12322 2222222 1346689999954 234445544 3489999999999999999
Q ss_pred HHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHH
Q 005407 80 QVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVK 114 (698)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 114 (698)
++|....-. .+ ++++.-+++++.+-.-.|.
T Consensus 177 ~~a~~~~~~--l~---~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 177 KKAKERGIE--LP---EEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHTT----S----HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHhCCC--Cc---HHHHHHHHHhhcCCHHHHH
Confidence 988654432 11 2455566666655443333
No 125
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.54 E-value=23 Score=39.40 Aligned_cols=102 Identities=11% Similarity=0.081 Sum_probs=64.8
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEE-EeCchHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILV-TTRKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~Iii-TTR~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.++.-++|+|+|.......+..+...+..-..+.++|+ ||....+...+-.. -..+.+..++.++..+.+.+.+...+
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR-Cq~f~f~~ls~eei~~~L~~Il~~Eg 200 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR-CLQFNLKQMPPGHIVSHLDAILGEEG 200 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH-HHhcccCCCChHHHHHHHHHHHHHcC
Confidence 35667899999966555667777666655444555555 44445554332211 23799999999999998887764322
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChHHHHH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPLAVKT 115 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 115 (698)
.. . -.+....|++.++|-|.....
T Consensus 201 i~---~--d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 201 IA---H--EVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred CC---C--CHHHHHHHHHHcCCCHHHHHH
Confidence 21 0 123457789999998864433
No 126
>PRK06620 hypothetical protein; Validated
Probab=68.90 E-value=68 Score=30.42 Aligned_cols=90 Identities=10% Similarity=0.009 Sum_probs=51.2
Q ss_pred EEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-------hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhc
Q 005407 12 FFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-------VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALS 84 (698)
Q Consensus 12 ~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-------~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~ 84 (698)
-++++|||..-.....-.+...+. ..|..||+|++. .++..++... .+++++++++++-.++..+.+..
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~g--l~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSV--LSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCC--ceEeeCCCCHHHHHHHHHHHHHH
Confidence 478899993211111222222222 346689999874 2334444443 37999999999988888777643
Q ss_pred cCCchhhhhHHHHHHHHHHHHhCCCh
Q 005407 85 IRSDIEEYKKFENIGRQIIGKCKGLP 110 (698)
Q Consensus 85 ~~~~~~~~~~~~~~~~~i~~~c~GlP 110 (698)
..-. .+ +++..-|++++.|--
T Consensus 163 ~~l~--l~---~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 163 SSVT--IS---RQIIDFLLVNLPREY 183 (214)
T ss_pred cCCC--CC---HHHHHHHHHHccCCH
Confidence 2211 11 345666666666543
No 127
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=68.36 E-value=21 Score=40.07 Aligned_cols=98 Identities=11% Similarity=0.095 Sum_probs=60.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCch-HHHHH-hCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKV-KVAIA-IGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~-~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
+++-++|+|++-.........+...+.......++|++|.+. .+... .+. -..+++++++.++..+.+.+.+-..+
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSR--C~~f~f~~Ls~eeI~~~L~~Il~kEg 195 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR--CLQFVLRNMTAQQVADHLAHVLDSEK 195 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHH--HhhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 566789999995444334555555554434456777776553 33222 122 12688889999999888887765433
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChHHH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPLAV 113 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPLal 113 (698)
... -.+....|++.++|-+--+
T Consensus 196 i~i-----d~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 196 IAY-----EPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred CCc-----CHHHHHHHHHHhCCCHHHH
Confidence 221 1235678889998877433
No 128
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.21 E-value=28 Score=36.73 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=65.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEe-CchHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTT-RKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++-++|+|++-......+..+...+....+.+.+|++| +...+....... ...++..+++.++..+.+...+-..+.
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR-~~~v~f~~l~~~ei~~~l~~~~~~~g~ 204 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASR-CQRFNFKRIPLEEIQQQLQGICEAEGI 204 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHH-HHHhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 456688999995545556777777766655667766655 444554332211 237899999999988887776533222
Q ss_pred chhhhhHHHHHHHHHHHHhCCChH-HHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPL-AVKTLG 117 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPL-al~~~g 117 (698)
.. -.+.+..+++.++|-+- |+..+-
T Consensus 205 ~i-----~~~al~~l~~~s~g~lr~a~~~L~ 230 (397)
T PRK14955 205 SV-----DADALQLIGRKAQGSMRDAQSILD 230 (397)
T ss_pred CC-----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 12467889999999664 444433
No 129
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=68.11 E-value=28 Score=37.37 Aligned_cols=104 Identities=14% Similarity=0.060 Sum_probs=62.4
Q ss_pred eEEEEEeCCCCCCh-hhH-HHHHhhcCC-CCCCcEEEEEeCc---------hHHHHHhCCCCccceeccCCChHhHHHHH
Q 005407 11 KFFLVLDDVWTEEP-QNW-ERLWGCLRC-GSKGSRILVTTRK---------VKVAIAIGTTKSNIIPIELLSDEDCWSIF 78 (698)
Q Consensus 11 r~LlVLDdvw~~~~-~~~-~~l~~~~~~-~~~gs~IiiTTR~---------~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf 78 (698)
.-+||+||+..... ..+ +.+...++. ...|..||+|+.. .++..++.. +.++++++++.++-.+++
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~--Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNM--GLSIAIQKLDNKTATAII 284 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhC--CceeccCCcCHHHHHHHH
Confidence 34889999943221 122 333333332 1345568888653 233344444 347889999999999999
Q ss_pred HHHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHH
Q 005407 79 SQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSL 119 (698)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~ 119 (698)
.+++-..+-.... -+++..-|++.+.|.|-.+..+-..
T Consensus 285 ~~~~~~~gl~~~l---~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 285 KKEIKNQNIKQEV---TEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHhcCCCCCC---CHHHHHHHHHccCCCHHHHHHHHHH
Confidence 9887543210011 1357778899999988776655533
No 130
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=68.00 E-value=38 Score=37.10 Aligned_cols=102 Identities=11% Similarity=0.078 Sum_probs=65.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCch-HHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKV-KVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++-++|+|++-.........+...+....+.+++|++|.+. .+....... ...++..+++.++..+.+.+.+-..+.
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SR-c~~~~F~~Ls~~ei~~~L~~Il~~EGi 194 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSR-TQHFRFKQIPQNSIISHLKTILEKEGV 194 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhh-ceeEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 456688999996655556666666665555567777777663 322221111 237999999999998888776654332
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVKTL 116 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~~~ 116 (698)
.. -.+.+..|++.++|-+--+..+
T Consensus 195 ~i-----~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 195 SY-----EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CC-----CHHHHHHHHHHcCCcHHHHHHH
Confidence 21 1246778899999987444333
No 131
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.89 E-value=29 Score=37.50 Aligned_cols=107 Identities=21% Similarity=0.201 Sum_probs=64.7
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.+++-++|+|++..-...+.+.+...+........+|++|.+ ..+....... ...+++.+++.++....+...+...+
T Consensus 115 ~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR-~~vv~f~~l~~~el~~~L~~i~~~eg 193 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR-CQVIEFRNISDELIIKRLQEVAEAEG 193 (472)
T ss_pred cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcC-cEEEEECCccHHHHHHHHHHHHHHcC
Confidence 356679999999443334455565555543344455544443 4454433222 24799999999998888888765433
Q ss_pred CchhhhhHHHHHHHHHHHHhC-CChHHHHHHHHHh
Q 005407 87 SDIEEYKKFENIGRQIIGKCK-GLPLAVKTLGSLL 120 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~-GlPLal~~~g~~L 120 (698)
... . ++....|+++++ +++.|+..+....
T Consensus 194 i~i--~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 194 IEI--D---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CCC--C---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 221 1 235666787775 4577777776543
No 132
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.63 E-value=3.7 Score=23.88 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=11.8
Q ss_pred cCceEeccccccccccch
Q 005407 341 HLRYLALGWNPWIKELPE 358 (698)
Q Consensus 341 ~L~~L~L~~~~~l~~lp~ 358 (698)
+|++|++++|. ++++|+
T Consensus 3 ~L~~L~vs~N~-Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQ-LTSLPE 19 (26)
T ss_pred ccceeecCCCc-cccCcc
Confidence 46677777777 777765
No 133
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=65.45 E-value=43 Score=37.18 Aligned_cols=72 Identities=13% Similarity=0.175 Sum_probs=44.4
Q ss_pred EEEEeCCCCCCh-hhHH-HHHhhcCC-CCCCcEEEEEeCc---------hHHHHHhCCCCccceeccCCChHhHHHHHHH
Q 005407 13 FLVLDDVWTEEP-QNWE-RLWGCLRC-GSKGSRILVTTRK---------VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQ 80 (698)
Q Consensus 13 LlVLDdvw~~~~-~~~~-~l~~~~~~-~~~gs~IiiTTR~---------~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~ 80 (698)
+|||||+..... ..|+ .+...++. ...|..|||||+. .++..++.. ..+++++..+.+.-.+++.+
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~--GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEW--GLITDVQPPELETRIAILRK 457 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhc--CceEEcCCCCHHHHHHHHHH
Confidence 789999943321 2222 22222221 1235568888875 223344444 34899999999999999998
Q ss_pred HhhccC
Q 005407 81 VALSIR 86 (698)
Q Consensus 81 ~a~~~~ 86 (698)
++....
T Consensus 458 ka~~r~ 463 (617)
T PRK14086 458 KAVQEQ 463 (617)
T ss_pred HHHhcC
Confidence 875543
No 134
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=65.36 E-value=31 Score=39.46 Aligned_cols=94 Identities=19% Similarity=0.296 Sum_probs=55.4
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEE--eCch--HHHHHhCCCCccceeccCCChHhHHHHHHHHhhc
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVT--TRKV--KVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALS 84 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiT--TR~~--~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~ 84 (698)
+++.+||||||+.-...+++.+..... .|+.++|+ |.+. .+....... ..++.+++++.++...++.+.+-.
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR-~~v~~l~pLs~edi~~IL~~~l~~ 183 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSR-SRLFRLKSLSDEDLHQLLKRALQD 183 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhcc-ccceecCCCCHHHHHHHHHHHHHH
Confidence 467799999996555556666654433 45556653 4442 222222111 247999999999999998876541
Q ss_pred c-----CCchhhhhHHHHHHHHHHHHhCCC
Q 005407 85 I-----RSDIEEYKKFENIGRQIIGKCKGL 109 (698)
Q Consensus 85 ~-----~~~~~~~~~~~~~~~~i~~~c~Gl 109 (698)
. ...... -++....|++.+.|.
T Consensus 184 ~~~~~g~~~v~I---~deaL~~La~~s~GD 210 (725)
T PRK13341 184 KERGYGDRKVDL---EPEAEKHLVDVANGD 210 (725)
T ss_pred HHhhcCCcccCC---CHHHHHHHHHhCCCC
Confidence 1 010011 134556777888775
No 135
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.31 E-value=51 Score=36.24 Aligned_cols=106 Identities=16% Similarity=0.147 Sum_probs=65.4
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.+++-++|+||+-......+..+...+......+++|++|.+ ..+...+... ..++++++++.++..+.+.+.+-..+
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SR-c~~~~f~~Ls~~eI~~~L~~il~~eg 195 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSR-CIQLHLKHISQADIKDQLKIILAKEN 195 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHh-eeeEEeCCCCHHHHHHHHHHHHHHcC
Confidence 356679999999555555677777666665556666655544 4444332111 24799999999998877776554322
Q ss_pred CchhhhhHHHHHHHHHHHHhCCCh-HHHHHHHHH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLP-LAVKTLGSL 119 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlP-Lal~~~g~~ 119 (698)
.. . -.+....|++.++|-+ -|+..+-.+
T Consensus 196 i~--~---e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 196 IN--S---DEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred CC--C---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 21 0 1234567888888855 455555443
No 136
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.85 E-value=36 Score=39.46 Aligned_cols=105 Identities=10% Similarity=0.112 Sum_probs=67.1
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.+++-++|+|++-......+..+...+.......++|++|.+ ..+...+-.. -.+|++++++.++..+.+.+.+-...
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSR-Cq~f~fkpLs~eEI~~~L~~il~~Eg 195 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR-CLQFNLKSLTQDEIGTQLNHILTQEQ 195 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHh-heEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 467789999999665566677776666554455666665554 4444332111 23899999999999988887654322
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChH-HHHHHHH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPL-AVKTLGS 118 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPL-al~~~g~ 118 (698)
.. --.+....|++.++|.|- |+..+-.
T Consensus 196 I~-----~edeAL~lIA~~S~Gd~R~ALnLLdQ 223 (944)
T PRK14949 196 LP-----FEAEALTLLAKAANGSMRDALSLTDQ 223 (944)
T ss_pred CC-----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 012457789999999875 4444333
No 137
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=64.28 E-value=1.3e+02 Score=35.01 Aligned_cols=107 Identities=7% Similarity=0.080 Sum_probs=59.2
Q ss_pred eEEEEEeCCCCCChhhHHHHHhhcCCC-CCCcEEEE--EeCch--------HHHHHhCCCCccceeccCCChHhHHHHHH
Q 005407 11 KFFLVLDDVWTEEPQNWERLWGCLRCG-SKGSRILV--TTRKV--------KVAIAIGTTKSNIIPIELLSDEDCWSIFS 79 (698)
Q Consensus 11 r~LlVLDdvw~~~~~~~~~l~~~~~~~-~~gs~Iii--TTR~~--------~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~ 79 (698)
..+||||+|..-....-+.+...+.|. ..+++|+| +|.+. .+..+++. ..+..+|.+.++-.+++.
T Consensus 870 v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~---eeIvF~PYTaEQL~dILk 946 (1164)
T PTZ00112 870 VSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAF---GRLVFSPYKGDEIEKIIK 946 (1164)
T ss_pred ceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhcccc---ccccCCCCCHHHHHHHHH
Confidence 458999999321111112232223322 24566665 33322 22222222 246679999999999999
Q ss_pred HHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhc
Q 005407 80 QVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLR 121 (698)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~ 121 (698)
.++-..... -....++.+|+.++...|-.=.||.++-.+..
T Consensus 947 ~RAe~A~gV-LdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 947 ERLENCKEI-IDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred HHHHhCCCC-CCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 987643221 22455666666666655666777777766653
No 138
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.18 E-value=29 Score=37.19 Aligned_cols=98 Identities=14% Similarity=-0.009 Sum_probs=62.4
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEE-EeCchHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILV-TTRKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~Iii-TTR~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.++.-++|+|+|..-....+..+...+........+|+ ||....+...+... -..|...+++.++..+.+.+.+-..+
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR-Cq~~~f~~ls~~~i~~~L~~i~~~Eg 197 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR-CQDFIFKKVPLSVLQDYSEKLCKIEN 197 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh-hheeeecCCCHHHHHHHHHHHHHHcC
Confidence 35667899999966566667777666654434455554 44445554333221 23699999999998888887764332
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPL 111 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPL 111 (698)
.. . -++....|++.++|-+-
T Consensus 198 i~--~---e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 198 VQ--Y---DQEGLFWIAKKGDGSVR 217 (484)
T ss_pred CC--C---CHHHHHHHHHHcCChHH
Confidence 21 0 12456788999998873
No 139
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=63.30 E-value=34 Score=34.73 Aligned_cols=97 Identities=11% Similarity=0.155 Sum_probs=59.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++-++|+|++-......-..+.-.+..-..++.+|++|.+ ..+...+-.. -..+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR-Cq~i~~~~~~~~~~~~~L~~~~----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR-CQRLEFKLPPAHEALAWLLAQG----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh-heEeeCCCcCHHHHHHHHHHcC----C
Confidence 56678899999444333333444444444456667777765 4454433211 2378899999999988887531 1
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVKTLG 117 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~~~g 117 (698)
+ ...+..++..++|-|+....+.
T Consensus 187 ~-------~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 S-------ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C-------hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1125678999999998665544
No 140
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.95 E-value=50 Score=35.76 Aligned_cols=97 Identities=12% Similarity=0.139 Sum_probs=63.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeC-chHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTR-KVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR-~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++-++|+|+|-.........+...+..-.+.+++|++|. .+.+...+... ...+++.+++.++..+.+.+.+...+.
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SR-c~~~~f~~l~~~el~~~L~~ia~~Egi 193 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISR-CQRFDLQKIPTDKLVEHLVDIAKKENI 193 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHh-heeeecccccHHHHHHHHHHHHHHcCC
Confidence 5566899999954444556666666665556666766654 34554433221 237999999999999998887755433
Q ss_pred chhhhhHHHHHHHHHHHHhCCChH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPL 111 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPL 111 (698)
... ++....|++.++|-+-
T Consensus 194 ~i~-----~eAL~lIa~~s~GslR 212 (491)
T PRK14964 194 EHD-----EESLKLIAENSSGSMR 212 (491)
T ss_pred CCC-----HHHHHHHHHHcCCCHH
Confidence 211 2356678888888664
No 141
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.78 E-value=54 Score=36.68 Aligned_cols=100 Identities=13% Similarity=0.138 Sum_probs=63.6
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
++.-++|+|+|.......+..+...+..-....++|++|.+ ..+....-.. ...+++++++.++..+.+.+.+...+.
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSR-c~~~~f~~Ls~eei~~~L~~i~~~egi 201 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSR-CLQFNLRPMAPETVLEHLTQVLAAENV 201 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHh-ceeeecCCCCHHHHHHHHHHHHHHcCC
Confidence 45568899999666666677776666554455566655544 4444332211 237999999999998888877654333
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVK 114 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~ 114 (698)
... .+....|++.++|-+-.+.
T Consensus 202 ~ie-----~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 202 PAE-----PQALRLLARAARGSMRDAL 223 (618)
T ss_pred CCC-----HHHHHHHHHHcCCCHHHHH
Confidence 211 2356778888888664433
No 142
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.63 E-value=67 Score=35.97 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=63.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++-++|+|++........+.+...+......+.+|++|.+ ..+....... ...++++.++.++....+.+.+...+.
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR-~~~i~f~~l~~~el~~~L~~~a~~egl 197 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSR-CQRFDFHRHSVADMAAHLRKIAAAEGI 197 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhc-cceeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 55678999999444445566666555554456667666644 3443332211 237888999999988888877654332
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVKTL 116 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~~~ 116 (698)
.. . .+....+++.++|-+-.+...
T Consensus 198 ~i--~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 198 NL--E---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred CC--C---HHHHHHHHHHcCCCHHHHHHH
Confidence 21 1 246778899999988544433
No 143
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.14 E-value=55 Score=34.14 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=60.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEe-CchHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTT-RKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++-++++|++.......+..+...+........+|++| ..+.+....... ..+++..+++.++....+...+...+.
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr-~~~v~~~~~~~~~l~~~l~~~~~~~g~ 185 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSR-CQIFDFKRITIKDIKEHLAGIAVKEGI 185 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhc-ceeEecCCccHHHHHHHHHHHHHHcCC
Confidence 455679999994433445666655554434445566555 333443222211 237899999999998888887755433
Q ss_pred chhhhhHHHHHHHHHHHHhCCChH-HHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPL-AVKTLG 117 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPL-al~~~g 117 (698)
... .+....+++.++|-+- |+..+.
T Consensus 186 ~i~-----~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 186 KFE-----DDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred CCC-----HHHHHHHHHhCCCCHHHHHHHHH
Confidence 211 2466778888888544 333333
No 144
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=59.41 E-value=1.5e+02 Score=30.05 Aligned_cols=95 Identities=11% Similarity=0.041 Sum_probs=61.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++=++|+|++-.........+.-.+..-.+++.+|++|.+ ..+...+-.. -..+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SR-Cq~~~~~~~~~~~~~~~L~~~~----~ 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSR-CQQWVVTPPSTAQAMQWLKGQG----I 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc-ceeEeCCCCCHHHHHHHHHHcC----C
Confidence 44557888999555555566666555555556677776666 4555443222 2379999999999998886531 1
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVKTLG 117 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~~~g 117 (698)
+ .+..++..++|-|+....+.
T Consensus 182 ~---------~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 182 T---------VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred c---------hHHHHHHHcCCCHHHHHHHh
Confidence 0 13467889999998665553
No 145
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.38 E-value=71 Score=35.82 Aligned_cols=103 Identities=14% Similarity=0.128 Sum_probs=63.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEe-CchHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTT-RKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++-++|+||+..........+...+..-...+.+|++| +...+...+... ..+++..+++.++....+.+.+-..+.
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SR-c~~vef~~l~~~ei~~~L~~i~~~egi 204 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASR-CQRFNFKRIPLDEIQSQLQMICRAEGI 204 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh-ceEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 455578999996555555666766665544556655554 445554433211 237999999999988877766543222
Q ss_pred chhhhhHHHHHHHHHHHHhCCC-hHHHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGL-PLAVKTLG 117 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~Gl-PLal~~~g 117 (698)
.. -.+.+..+++.++|- -.|+..+-
T Consensus 205 ~I-----~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 205 QI-----DADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred CC-----CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 11 124677889999984 44444443
No 146
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=59.27 E-value=58 Score=33.19 Aligned_cols=93 Identities=10% Similarity=0.008 Sum_probs=61.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCch-HHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKV-KVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++=++|+|++..........+.-.+..-.++..+|++|.+. .+...+-.. -..+.+.+++.+++.+.+...+.. .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR-C~~~~~~~~~~~~~~~~L~~~~~~--~ 182 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR-CQTWLIHPPEEQQALDWLQAQSSA--E 182 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh-ceEEeCCCCCHHHHHHHHHHHhcc--C
Confidence 566678899996655555666666555555666777777764 555443211 237999999999999888865311 1
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLA 112 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLa 112 (698)
. ..+...+..++|-|..
T Consensus 183 ----~----~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 183 ----I----SEILTALRINYGRPLL 199 (325)
T ss_pred ----h----HHHHHHHHHcCCCHHH
Confidence 1 1255678889999963
No 147
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.31 E-value=55 Score=36.77 Aligned_cols=97 Identities=16% Similarity=0.099 Sum_probs=62.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEe-CchHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTT-RKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++=++|+|++-......+..+...+..-..++.+|++| +...+...+... ..+++..+++.++..+.+.+.+-..+.
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SR-c~iv~f~~ls~~ei~~~L~~ia~~egi 198 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSR-CQIFDFNRIQVADIVNHLQYVASKEGI 198 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhh-hheeecCCCCHHHHHHHHHHHHHHcCC
Confidence 455578999995555556677766666555566666544 555555433221 237999999999998888876654332
Q ss_pred chhhhhHHHHHHHHHHHHhCCChH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPL 111 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPL 111 (698)
.. . .+.+..|++.++|-.-
T Consensus 199 ~i--~---~~al~~La~~s~gdlr 217 (614)
T PRK14971 199 TA--E---PEALNVIAQKADGGMR 217 (614)
T ss_pred CC--C---HHHHHHHHHHcCCCHH
Confidence 21 1 2356778888888554
No 148
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=57.58 E-value=38 Score=34.98 Aligned_cols=99 Identities=18% Similarity=0.265 Sum_probs=58.1
Q ss_pred cCCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEE--EeCchHH---HHHhCCCCccceeccCCChHhHHHHHHHH
Q 005407 7 IEGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILV--TTRKVKV---AIAIGTTKSNIIPIELLSDEDCWSIFSQV 81 (698)
Q Consensus 7 L~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v---~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~ 81 (698)
..++|.+|++|.|-.-+..|-+.+ +|...+|.-|+| ||-+..- ...... ..++++++|+.++-.+++.+-
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR--~~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSR--ARVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhh--hheeeeecCCHHHHHHHHHHH
Confidence 348899999999955444444444 344456776776 5555331 111122 348999999999999999884
Q ss_pred hhccCCchhh-hhHH-HHHHHHHHHHhCCCh
Q 005407 82 ALSIRSDIEE-YKKF-ENIGRQIIGKCKGLP 110 (698)
Q Consensus 82 a~~~~~~~~~-~~~~-~~~~~~i~~~c~GlP 110 (698)
+......... ...+ ++.-.-++..++|--
T Consensus 176 ~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 176 LLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred HhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 4322222110 0111 234556777777753
No 149
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=56.98 E-value=74 Score=34.23 Aligned_cols=103 Identities=12% Similarity=0.104 Sum_probs=61.4
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++-++|+|++..........+...+.....+..+|++|.. +.+...+... ...++++++++++..+.+...+-..+.
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sR-c~~v~f~~l~~~el~~~L~~~~~~eg~ 198 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSR-CQKMHLKRIPEETIIDKLALIAKQEGI 198 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHh-ceEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 56678899998433333445555555544446666666643 4443322111 237999999999988888776543322
Q ss_pred chhhhhHHHHHHHHHHHHhCCCh-HHHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLP-LAVKTLG 117 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlP-Lal~~~g 117 (698)
.. -.+.+..+++.++|-+ .|+..+-
T Consensus 199 ~i-----~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 199 ET-----SREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred CC-----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 1245778889998855 4444443
No 150
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.66 E-value=1.1e+02 Score=33.15 Aligned_cols=101 Identities=11% Similarity=0.066 Sum_probs=60.6
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEe-CchHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTT-RKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.+++-++|+|++..........+...+....+...+|++| +...+....... ...+++.+++.++....+...+-..+
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SR-c~~i~f~~ls~~el~~~L~~i~k~eg 195 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSR-CQRFIFSKPTKEQIKEYLKRICNEEK 195 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHh-ceEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3566799999995444445566665555544455666555 433443322111 23789999999998888887664333
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChHHHH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPLAVK 114 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPLal~ 114 (698)
... -.+.+..+++.++|.+-.+.
T Consensus 196 i~i-----d~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 196 IEY-----EEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred CCC-----CHHHHHHHHHHcCCCHHHHH
Confidence 221 12356678888888654333
No 151
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=56.51 E-value=55 Score=36.80 Aligned_cols=100 Identities=12% Similarity=0.133 Sum_probs=62.8
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.+++-++|+|+|..........+...+.......++|++|.+ ..+...+-.. ...|.+.+++.++..+.+.+.+-..+
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SR-C~~~~f~~Ls~~ei~~~L~~il~~e~ 195 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR-CLQFHLKALDVEQIRQQLEHILQAEQ 195 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhh-heEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 456779999999655555666666655554445555555554 4444322111 23899999999999988887653322
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChHHH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPLAV 113 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPLal 113 (698)
.. . -.+....|++.++|-+-..
T Consensus 196 i~---~--e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 196 IP---F--EPRALQLLARAADGSMRDA 217 (647)
T ss_pred CC---C--CHHHHHHHHHHcCCCHHHH
Confidence 21 0 1235677899999976533
No 152
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=55.41 E-value=84 Score=34.93 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=63.2
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEe-CchHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCCc
Q 005407 10 KKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTT-RKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRSD 88 (698)
Q Consensus 10 kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~ 88 (698)
++-++|+|++.......+..+...+........+|++| .-..+....... ...+++.+++.++....+...+-..+..
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SR-cq~ieF~~Ls~~eL~~~L~~il~kegi~ 197 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISR-CQRYNFKKLNNSELQELLKSIAKKEKIK 197 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhh-hhhcccCCCCHHHHHHHHHHHHHHcCCC
Confidence 34469999995555556666666655444455666555 444444332211 2379999999999998888776443221
Q ss_pred hhhhhHHHHHHHHHHHHhCCCh-HHHHHHHH
Q 005407 89 IEEYKKFENIGRQIIGKCKGLP-LAVKTLGS 118 (698)
Q Consensus 89 ~~~~~~~~~~~~~i~~~c~GlP-Lal~~~g~ 118 (698)
. . .+.+..+++.++|-+ .|+..+-.
T Consensus 198 I--s---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 198 I--E---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred C--C---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1 1 235677889999854 45555554
No 153
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=54.24 E-value=89 Score=32.13 Aligned_cols=94 Identities=16% Similarity=0.188 Sum_probs=61.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++=++|+|++.......+..+.-.+..-.+++.+|++|.+ ..+...+-.. -..+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SR-cq~i~~~~~~~~~~~~~L~~~~----~ 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSR-CRQFPMTVPAPEAAAAWLAAQG----V 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhc-CEEEEecCCCHHHHHHHHHHcC----C
Confidence 45557888999766666777776666665667766666666 5555443221 2379999999999998887642 1
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVKTL 116 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~~~ 116 (698)
+ + ...++..++|-|.....+
T Consensus 206 ~----~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A----D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C----h-----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577789999654444
No 154
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=53.10 E-value=1.1e+02 Score=34.75 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=63.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEE-EEeCchHHHHHh-CCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRIL-VTTRKVKVAIAI-GTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~Ii-iTTR~~~v~~~~-~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
+++-++|+|++-......+..+...+........+| +||+...+.... ... ..+++.+++.++..+.+...+-..+
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRc--q~ieF~~L~~eeI~~~L~~il~keg 194 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRV--QRFNFRRISEDEIVSRLEFILEKEN 194 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhc--eeEEccCCCHHHHHHHHHHHHHHcC
Confidence 566688999995545556666766555444445545 455555554332 222 3799999999999888887654332
Q ss_pred CchhhhhHHHHHHHHHHHHhCCCh-HHHHHHH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLP-LAVKTLG 117 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlP-Lal~~~g 117 (698)
... -.+.+..+++.++|-+ .|+..+.
T Consensus 195 I~i-----d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 195 ISY-----EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred CCC-----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 210 1235677889998865 4444444
No 155
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=52.74 E-value=75 Score=33.67 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=51.7
Q ss_pred EEEEeCCCCCChh-hH-HHHHhhcCC-CCCCcEEEEEeCc-h-H-------HHHHhCCCCccceeccCCChHhHHHHHHH
Q 005407 13 FLVLDDVWTEEPQ-NW-ERLWGCLRC-GSKGSRILVTTRK-V-K-------VAIAIGTTKSNIIPIELLSDEDCWSIFSQ 80 (698)
Q Consensus 13 LlVLDdvw~~~~~-~~-~~l~~~~~~-~~~gs~IiiTTR~-~-~-------v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~ 80 (698)
+|||||+...... .+ +.+...+.. ...|..||+||.. . . +..++.. +.++++++.+.++-.+++..
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~--g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEW--GLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccC--CeEEEeCCCCHHHHHHHHHH
Confidence 7889999432111 11 223222221 1234568887764 1 1 2222222 23789999999999999998
Q ss_pred HhhccCCchhhhhHHHHHHHHHHHHhCCChH
Q 005407 81 VALSIRSDIEEYKKFENIGRQIIGKCKGLPL 111 (698)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 111 (698)
.+-..... .. +++..-|++++.|-.-
T Consensus 280 ~~~~~~~~--l~---~e~l~~ia~~~~~~~r 305 (405)
T TIGR00362 280 KAEEEGLE--LP---DEVLEFIAKNIRSNVR 305 (405)
T ss_pred HHHHcCCC--CC---HHHHHHHHHhcCCCHH
Confidence 87654332 11 3456667777776554
No 156
>PRK04132 replication factor C small subunit; Provisional
Probab=51.00 E-value=1.3e+02 Score=35.18 Aligned_cols=98 Identities=16% Similarity=0.075 Sum_probs=63.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCCc
Q 005407 10 KKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRSD 88 (698)
Q Consensus 10 kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~ 88 (698)
+.-++|+|++..........+...+.......++|++|.+ ..+....... ...+++.+++.++-.+.+.+.+-..+-.
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSR-C~~i~F~~ls~~~i~~~L~~I~~~Egi~ 708 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR-CAIFRFRPLRDEDIAKRLRYIAENEGLE 708 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhh-ceEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4579999999666656667776666654555667666655 4443332211 2489999999999888877765432211
Q ss_pred hhhhhHHHHHHHHHHHHhCCChHHH
Q 005407 89 IEEYKKFENIGRQIIGKCKGLPLAV 113 (698)
Q Consensus 89 ~~~~~~~~~~~~~i~~~c~GlPLal 113 (698)
.. ++....|++.|+|-+-..
T Consensus 709 --i~---~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 709 --LT---EEGLQAILYIAEGDMRRA 728 (846)
T ss_pred --CC---HHHHHHHHHHcCCCHHHH
Confidence 11 346788999999987433
No 157
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=50.91 E-value=67 Score=33.72 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=57.6
Q ss_pred EEEEeCCCCCCh-hhH-HHHHhhcCC-CCCCcEEEEEeCc---------hHHHHHhCCCCccceeccCCChHhHHHHHHH
Q 005407 13 FLVLDDVWTEEP-QNW-ERLWGCLRC-GSKGSRILVTTRK---------VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQ 80 (698)
Q Consensus 13 LlVLDdvw~~~~-~~~-~~l~~~~~~-~~~gs~IiiTTR~---------~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~ 80 (698)
++++||++--.. ..| +.+...++. ...|-.||+|++. .++..+++. +.++++++++.+....++.+
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~--Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW--GLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhc--eeEEeeCCCCHHHHHHHHHH
Confidence 889999954111 112 223333331 2234489999854 344555555 34899999999999999998
Q ss_pred HhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHH
Q 005407 81 VALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTL 116 (698)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~ 116 (698)
++....-. -+.+...-++.++-+-..-+.=|+..+
T Consensus 256 ka~~~~~~-i~~ev~~~la~~~~~nvReLegaL~~l 290 (408)
T COG0593 256 KAEDRGIE-IPDEVLEFLAKRLDRNVRELEGALNRL 290 (408)
T ss_pred HHHhcCCC-CCHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 77554443 123334444554444444444444333
No 158
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=50.55 E-value=1.1e+02 Score=34.28 Aligned_cols=101 Identities=12% Similarity=0.122 Sum_probs=63.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEe-CchHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTT-RKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++-++|+|++-.........+...+..-..++++|++| ....+...+... ...++++.++.++..+.+.+.+-....
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SR-cq~~~f~~l~~~el~~~L~~i~~kegi 209 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSR-CQRFDLRRIEADVLAAHLSRIAAKEGV 209 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhh-eeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 445578999995444445666665555545566666555 444444333211 237999999999999988887654332
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVKT 115 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~~ 115 (698)
... .+....|++.++|-+.-+..
T Consensus 210 ~i~-----~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 210 EVE-----DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred CCC-----HHHHHHHHHHcCCCHHHHHH
Confidence 211 24567788888887754433
No 159
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=49.99 E-value=12 Score=21.84 Aligned_cols=12 Identities=33% Similarity=0.304 Sum_probs=6.4
Q ss_pred ccCceEeccccc
Q 005407 340 IHLRYLALGWNP 351 (698)
Q Consensus 340 ~~L~~L~L~~~~ 351 (698)
.+|+.|+|+.|.
T Consensus 2 ~~L~~L~L~~Nk 13 (26)
T smart00365 2 TNLEELDLSQNK 13 (26)
T ss_pred CccCEEECCCCc
Confidence 345555555555
No 160
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=48.80 E-value=9.1 Score=21.50 Aligned_cols=11 Identities=36% Similarity=0.359 Sum_probs=4.3
Q ss_pred cCceEeccccc
Q 005407 341 HLRYLALGWNP 351 (698)
Q Consensus 341 ~L~~L~L~~~~ 351 (698)
+|++|+|++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 44445554444
No 161
>PF14516 AAA_35: AAA-like domain
Probab=48.57 E-value=73 Score=32.66 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=41.9
Q ss_pred cceeccCCChHhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhccc
Q 005407 62 NIIPIELLSDEDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLRFK 123 (698)
Q Consensus 62 ~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~ 123 (698)
..+++++++.+|...|..++...... ....+|...++|.|--+..++..+...
T Consensus 194 ~~i~L~~Ft~~ev~~L~~~~~~~~~~---------~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 194 QPIELPDFTPEEVQELAQRYGLEFSQ---------EQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cceeCCCCCHHHHHHHHHhhhccCCH---------HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 46889999999999999877433211 127889999999999999999988653
No 162
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.24 E-value=95 Score=33.99 Aligned_cols=97 Identities=10% Similarity=0.099 Sum_probs=58.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
++.-++|+|+|..........+...+....+.+++|++|.+ ..+....... ...+++++++.++..+.+...+-..+.
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SR-c~~~~f~~l~~~~i~~~l~~il~~egi 196 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSR-CLQFHLAQLPPLQIAAHCQHLLKEENV 196 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHH-hhhhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 56668899999554555666666665555556777766554 3443222111 236889999998877766665543322
Q ss_pred chhhhhHHHHHHHHHHHHhCCChH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPL 111 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPL 111 (698)
... .+....|++.++|-+-
T Consensus 197 ~~~-----~~al~~ia~~s~GslR 215 (509)
T PRK14958 197 EFE-----NAALDLLARAANGSVR 215 (509)
T ss_pred CCC-----HHHHHHHHHHcCCcHH
Confidence 211 2345678888888764
No 163
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=48.01 E-value=1.4e+02 Score=31.54 Aligned_cols=64 Identities=17% Similarity=0.296 Sum_probs=47.6
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchHHHH-----HhCCCCccceeccCCChHhHHHH
Q 005407 10 KKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKVAI-----AIGTTKSNIIPIELLSDEDCWSI 77 (698)
Q Consensus 10 kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~-----~~~~~~~~~~~v~~L~~~~a~~L 77 (698)
++..|+||.| .....|+.....+.+.++. +|++|+-+..+.. ..... ...+++.||+-.|-..+
T Consensus 94 ~~~yifLDEI--q~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR-~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 94 EKSYIFLDEI--QNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGR-GKDLELYPLSFREFLKL 162 (398)
T ss_pred CCceEEEecc--cCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCC-ceeEEECCCCHHHHHhh
Confidence 6789999999 4467898888877777766 8999998866542 22222 45899999999887653
No 164
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=47.80 E-value=39 Score=35.17 Aligned_cols=95 Identities=13% Similarity=0.079 Sum_probs=54.0
Q ss_pred ceEEEEEeCCCCC-----------Chh---hHHHHHhhcCCC--CCCcEEEEEeCchHHHHHhCC---CCccceeccCCC
Q 005407 10 KKFFLVLDDVWTE-----------EPQ---NWERLWGCLRCG--SKGSRILVTTRKVKVAIAIGT---TKSNIIPIELLS 70 (698)
Q Consensus 10 kr~LlVLDdvw~~-----------~~~---~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~~~~---~~~~~~~v~~L~ 70 (698)
...+|++||++.- +.. .+..+...+... ..+.+||.||...+.....-. .-+..+++...+
T Consensus 215 ~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~ 294 (364)
T TIGR01242 215 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPD 294 (364)
T ss_pred CCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcC
Confidence 4579999999431 111 122232222221 346688888886443221111 003478999999
Q ss_pred hHhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCCCh
Q 005407 71 DEDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLP 110 (698)
Q Consensus 71 ~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlP 110 (698)
.++..++|..++.+.... ..-. ...+++.+.|..
T Consensus 295 ~~~r~~Il~~~~~~~~l~--~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 295 FEGRLEILKIHTRKMKLA--EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHHHHhcCCCC--ccCC----HHHHHHHcCCCC
Confidence 999999999887554322 1111 356777777764
No 165
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.20 E-value=1.7e+02 Score=33.00 Aligned_cols=102 Identities=14% Similarity=0.099 Sum_probs=61.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++-++|+|++.......+..+...+..-.....+|++|.+ ..+...+... -..++...++.++..+.+.+.+-..+.
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSR-c~~~~f~~l~~~ei~~~L~~ia~kegi 198 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISR-CQRFDFRRIPLEAMVQHLSEIAEKESI 198 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhh-eeEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 45568899999554555666776666554445555555544 4444332211 236888899998888777776643222
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVKTL 116 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~~~ 116 (698)
.+. .+.+..|++.++|-+..+..+
T Consensus 199 ~is-----~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 199 EIE-----PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred CCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 111 235778889999877544433
No 166
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=47.15 E-value=1.4e+02 Score=34.77 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=64.6
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.+++-++|||++-......+..|...+..-...+.+|++|.+ ..+...+... ..+|+...++.++..+.+.+.+-..+
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSR-c~~v~F~~l~~~~l~~~L~~il~~EG 196 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSR-THHYPFRLVPPEVMRGYLERICAQEG 196 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh-eeEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 355567889999665566666777766665566666665544 4454433211 23799999999998888877643322
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChH-HHHHHHH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPL-AVKTLGS 118 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPL-al~~~g~ 118 (698)
.. . -.+....|++.++|-+. ++..+-.
T Consensus 197 v~--i---d~eal~lLa~~sgGdlR~Al~eLEK 224 (824)
T PRK07764 197 VP--V---EPGVLPLVIRAGGGSVRDSLSVLDQ 224 (824)
T ss_pred CC--C---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 21 0 12345678888888773 3333333
No 167
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=45.97 E-value=1.5e+02 Score=32.90 Aligned_cols=98 Identities=15% Similarity=0.149 Sum_probs=61.2
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.+++-++|+|++-......+..+...+..-.+...+|++|.+ ..+....... ...++..+++.++..+.+...+...+
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SR-c~~~~f~~l~~~el~~~L~~i~~~eg 195 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSR-CQHFNFRLLSLEKIYNMLKKVCLEDQ 195 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHh-ceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 356668999999555555666676666554456666666544 4443332211 23689999999998888887765433
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPL 111 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPL 111 (698)
... -.+.+..|++.++|-+-
T Consensus 196 i~i-----d~eAl~lLa~~s~GdlR 215 (563)
T PRK06647 196 IKY-----EDEALKWIAYKSTGSVR 215 (563)
T ss_pred CCC-----CHHHHHHHHHHcCCCHH
Confidence 221 12356668888888664
No 168
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=45.52 E-value=31 Score=29.69 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=26.0
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCC------CCCcEEEEEeCchH
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCG------SKGSRILVTTRKVK 51 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~------~~gs~IiiTTR~~~ 51 (698)
..+..+||+||++.........+...+... ..+.+||+||....
T Consensus 82 ~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 82 KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred cCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 457789999999643222222333322222 36788988888644
No 169
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.32 E-value=98 Score=34.11 Aligned_cols=107 Identities=9% Similarity=0.090 Sum_probs=63.7
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.+++-++|+|++..........+...+......+.+|++|.+ ..+...+.. ....+++++++.++..+.+.+.+-..+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~S-Rc~~~~f~~l~~~~i~~~L~~il~~eg 195 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS-RCLQFNLKQMPPPLIVSHLQHILEQEN 195 (527)
T ss_pred cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHH-HHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 356678999999554444566666666555456666666654 333322110 023799999999998888777654322
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChH-HHHHHHHHh
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPL-AVKTLGSLL 120 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPL-al~~~g~~L 120 (698)
.. . -.+....|++.++|-+- |+..+..++
T Consensus 196 i~--~---~~~al~~la~~s~Gslr~al~lldqai 225 (527)
T PRK14969 196 IP--F---DATALQLLARAAAGSMRDALSLLDQAI 225 (527)
T ss_pred CC--C---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 21 0 12345778888998664 444444333
No 170
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=44.68 E-value=87 Score=32.14 Aligned_cols=93 Identities=11% Similarity=0.091 Sum_probs=60.6
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-hHHHHHh-CCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-VKVAIAI-GTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
+++=++|+|++.......-..+.-.+..-..++.+|++|.+ ..+...+ ... ..+.+.+++.+++.+.+.... +
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC--q~~~~~~~~~~~~~~~L~~~~-~-- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC--RLHYLAPPPEQYALTWLSREV-T-- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc--ccccCCCCCHHHHHHHHHHcc-C--
Confidence 56678899999555545555555555554556677777766 5565443 222 278999999999988876532 1
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChHHH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPLAV 113 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPLal 113 (698)
.+ .+.+..++..++|-|...
T Consensus 182 ~~-------~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 182 MS-------QDALLAALRLSAGAPGAA 201 (334)
T ss_pred CC-------HHHHHHHHHHcCCCHHHH
Confidence 11 123667899999999643
No 171
>CHL00181 cbbX CbbX; Provisional
Probab=43.66 E-value=1.9e+02 Score=28.99 Aligned_cols=74 Identities=11% Similarity=0.056 Sum_probs=44.4
Q ss_pred EEEEEeCCCCC---------ChhhHHHHHhhcCCCCCCcEEEEEeCchHHHHHhCC------CCccceeccCCChHhHHH
Q 005407 12 FFLVLDDVWTE---------EPQNWERLWGCLRCGSKGSRILVTTRKVKVAIAIGT------TKSNIIPIELLSDEDCWS 76 (698)
Q Consensus 12 ~LlVLDdvw~~---------~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~------~~~~~~~v~~L~~~~a~~ 76 (698)
-+|++|++..- ....-+.+...+.....+.+||+++....+...... .-...++.++++.++..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48999999421 112223344444445556678788765444221111 013479999999999999
Q ss_pred HHHHHhhcc
Q 005407 77 IFSQVALSI 85 (698)
Q Consensus 77 Lf~~~a~~~ 85 (698)
++...+-..
T Consensus 204 I~~~~l~~~ 212 (287)
T CHL00181 204 IAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHh
Confidence 988876543
No 172
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=42.70 E-value=1.2e+02 Score=32.41 Aligned_cols=92 Identities=12% Similarity=0.072 Sum_probs=50.5
Q ss_pred eEEEEEeCCCCCC-hhhH-HHHHhhcCC-CCCCcEEEEEeC-chH----H----HHHhCCCCccceeccCCChHhHHHHH
Q 005407 11 KFFLVLDDVWTEE-PQNW-ERLWGCLRC-GSKGSRILVTTR-KVK----V----AIAIGTTKSNIIPIELLSDEDCWSIF 78 (698)
Q Consensus 11 r~LlVLDdvw~~~-~~~~-~~l~~~~~~-~~~gs~IiiTTR-~~~----v----~~~~~~~~~~~~~v~~L~~~~a~~Lf 78 (698)
.-+||+||+.... ...+ +.+...+.. ...|..||+||. ... + ..++.. +.++++++.+.++-.+++
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~--gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM--GLVAKLEPPDEETRKKIA 272 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhc--CceEeeCCCCHHHHHHHH
Confidence 4489999994321 1111 122222221 123446888874 322 1 112222 347899999999999999
Q ss_pred HHHhhccCCchhhhhHHHHHHHHHHHHhCCC
Q 005407 79 SQVALSIRSDIEEYKKFENIGRQIIGKCKGL 109 (698)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~i~~~c~Gl 109 (698)
.+.+...... .+ +++..-|++++.|.
T Consensus 273 ~~~~~~~~~~--l~---~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 273 RKMLEIEHGE--LP---EEVLNFVAENVDDN 298 (440)
T ss_pred HHHHHhcCCC--CC---HHHHHHHHhccccC
Confidence 8887543222 11 24566666666654
No 173
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=42.66 E-value=26 Score=33.30 Aligned_cols=47 Identities=32% Similarity=0.344 Sum_probs=28.7
Q ss_pred eEEEEEeCCCCC-ChhhHHHHHhhcCCCCCCcEEEEEeCchHHHHHhC
Q 005407 11 KFFLVLDDVWTE-EPQNWERLWGCLRCGSKGSRILVTTRKVKVAIAIG 57 (698)
Q Consensus 11 r~LlVLDdvw~~-~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~ 57 (698)
-=++|||||... |......+...+....+++-+||||.++.+...+.
T Consensus 159 ~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~ 206 (220)
T PF02463_consen 159 SPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDAD 206 (220)
T ss_dssp -SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-S
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 347899999432 23334455555555556688999999999876653
No 174
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=42.52 E-value=1.7e+02 Score=29.37 Aligned_cols=97 Identities=12% Similarity=0.102 Sum_probs=58.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeC-chHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTR-KVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR-~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+.+=++|+||+-.........+...+..-.+++.+|++|. ...+...+... ..+++..++++++..+.+.... .
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SR-c~~~~f~~l~~~~l~~~l~~~~----~ 163 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSR-CQVFNVKEPDQQKILAKLLSKN----K 163 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhC-eEEEECCCCCHHHHHHHHHHcC----C
Confidence 4777888899844444455566666665556777776554 45555443211 3489999999999887776541 1
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVKTLG 117 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~~~g 117 (698)
+ ++.++.++...+|.=-|+..++
T Consensus 164 ~-------~~~a~~~a~~~~~~~~a~~~~~ 186 (299)
T PRK07132 164 E-------KEYNWFYAYIFSNFEQAEKYIN 186 (299)
T ss_pred C-------hhHHHHHHHHcCCHHHHHHHHh
Confidence 1 1235566666676434555543
No 175
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=41.32 E-value=52 Score=34.73 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=68.3
Q ss_pred hhhhcCCc--eEEEEEeCCCCCChh--hHHHHHhhcCCC-CCCcEEEEEeCchH--HH----HHh-C--CCCccceeccC
Q 005407 3 LHESIEGK--KFFLVLDDVWTEEPQ--NWERLWGCLRCG-SKGSRILVTTRKVK--VA----IAI-G--TTKSNIIPIEL 68 (698)
Q Consensus 3 l~~~L~~k--r~LlVLDdvw~~~~~--~~~~l~~~~~~~-~~gs~IiiTTR~~~--v~----~~~-~--~~~~~~~~v~~ 68 (698)
+.++.++. -+++|||.+ |... .-+.+...|.|- -++||+|+.---.. .. ... . ......+.-+|
T Consensus 247 ~~~h~~q~k~~~llVlDEm--D~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~P 324 (529)
T KOG2227|consen 247 FEKHTKQSKFMLLLVLDEM--DHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPP 324 (529)
T ss_pred HHHHHhcccceEEEEechh--hHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecC
Confidence 34455443 499999998 3211 111122223332 36777776432111 11 111 1 22345788889
Q ss_pred CChHhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 005407 69 LSDEDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLL 120 (698)
Q Consensus 69 L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L 120 (698)
-+.++-.++|..+.-...........++-.|++++...|-+-.|+.+.-+++
T Consensus 325 YTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 325 YTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred CCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 9999999999988754443323345666777777777777888888877666
No 176
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=41.09 E-value=1.3e+02 Score=32.48 Aligned_cols=93 Identities=15% Similarity=0.094 Sum_probs=53.0
Q ss_pred EEEEEeCCCCCChh-hH-HHHHhhcCC-CCCCcEEEEEeCch--H-------HHHHhCCCCccceeccCCChHhHHHHHH
Q 005407 12 FFLVLDDVWTEEPQ-NW-ERLWGCLRC-GSKGSRILVTTRKV--K-------VAIAIGTTKSNIIPIELLSDEDCWSIFS 79 (698)
Q Consensus 12 ~LlVLDdvw~~~~~-~~-~~l~~~~~~-~~~gs~IiiTTR~~--~-------v~~~~~~~~~~~~~v~~L~~~~a~~Lf~ 79 (698)
-+||+||+..-... .+ +.+...+.. ...|..||+||... . +..++.. +.++++++.+.++-.+++.
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~--gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEW--GLTVDIEPPDLETRIAILK 290 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcC--CeeEEecCCCHHHHHHHHH
Confidence 38999999431111 11 223222221 12344688887652 1 2223332 2479999999999999999
Q ss_pred HHhhccCCchhhhhHHHHHHHHHHHHhCCChH
Q 005407 80 QVALSIRSDIEEYKKFENIGRQIIGKCKGLPL 111 (698)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 111 (698)
..+-..... .+ +++..-|++.+.|-.-
T Consensus 291 ~~~~~~~~~--l~---~e~l~~ia~~~~~~~R 317 (450)
T PRK00149 291 KKAEEEGID--LP---DEVLEFIAKNITSNVR 317 (450)
T ss_pred HHHHHcCCC--CC---HHHHHHHHcCcCCCHH
Confidence 987643221 11 2456677777777654
No 177
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.86 E-value=2.2e+02 Score=31.71 Aligned_cols=106 Identities=14% Similarity=0.194 Sum_probs=66.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEe-CchHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTT-RKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++-++|+|++-.........+...+........+|++| ....+...+... ...++..+++.++..+.+.+.+-..+.
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SR-c~~~~F~~l~~~~i~~~L~~i~~~egi 195 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR-THHYPFRLLPPRTMRALIARICEQEGV 195 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHh-ceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 456688999996555566667766666555556655544 445555433211 237999999999988888776644332
Q ss_pred chhhhhHHHHHHHHHHHHhCCCh-HHHHHHHHHh
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLP-LAVKTLGSLL 120 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlP-Lal~~~g~~L 120 (698)
.. . .+....|++.++|-+ -|+..+-..+
T Consensus 196 ~i--~---~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 196 VV--D---DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred CC--C---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 21 1 235567888888866 4555555444
No 178
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=40.74 E-value=1.8e+02 Score=29.08 Aligned_cols=74 Identities=9% Similarity=0.069 Sum_probs=43.7
Q ss_pred eEEEEEeCCCCC---------ChhhHHHHHhhcCCCCCCcEEEEEeCchHHHHHhCCC------CccceeccCCChHhHH
Q 005407 11 KFFLVLDDVWTE---------EPQNWERLWGCLRCGSKGSRILVTTRKVKVAIAIGTT------KSNIIPIELLSDEDCW 75 (698)
Q Consensus 11 r~LlVLDdvw~~---------~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~------~~~~~~v~~L~~~~a~ 75 (698)
.-+|++|++..- ....++.+...+.....+-+||+++.....-...... -...+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 468899999411 1122344455555555566777776543332111111 0236999999999999
Q ss_pred HHHHHHhhc
Q 005407 76 SIFSQVALS 84 (698)
Q Consensus 76 ~Lf~~~a~~ 84 (698)
+++...+-.
T Consensus 202 ~I~~~~l~~ 210 (284)
T TIGR02880 202 VIAGLMLKE 210 (284)
T ss_pred HHHHHHHHH
Confidence 998887643
No 179
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.06 E-value=1.9e+02 Score=32.26 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=62.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEe-CchHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTT-RKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++-++|+|+|..........+...+..-.....+|++| ....+....... ...++..+++.++..+.+...+-..+.
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SR-c~~~~f~~l~~~~i~~~L~~i~~~egi 196 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR-CQRFDFRRIPLQKIVDRLRYIADQEGI 196 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHh-hhhhhcCCCCHHHHHHHHHHHHHHhCC
Confidence 455578899995444445566665555444455666544 445555433211 237889999999888777766543322
Q ss_pred chhhhhHHHHHHHHHHHHhCCCh-HHHHHHHHHh
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLP-LAVKTLGSLL 120 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlP-Lal~~~g~~L 120 (698)
... .+....|++.++|-. .|+..+-..+
T Consensus 197 ~i~-----~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 197 SIS-----DAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred CCC-----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 211 235667888888854 5555554433
No 180
>PRK04195 replication factor C large subunit; Provisional
Probab=36.03 E-value=6e+02 Score=27.62 Aligned_cols=164 Identities=9% Similarity=0.081 Sum_probs=84.3
Q ss_pred ceEEEEEeCCCCCCh----hhHHHHHhhcCCCCCCcEEEEEeCchH-HHH-HhCCCCccceeccCCChHhHHHHHHHHhh
Q 005407 10 KKFFLVLDDVWTEEP----QNWERLWGCLRCGSKGSRILVTTRKVK-VAI-AIGTTKSNIIPIELLSDEDCWSIFSQVAL 83 (698)
Q Consensus 10 kr~LlVLDdvw~~~~----~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~-~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~ 83 (698)
++-+||+|++..-.. ..+..+...+.. .+..||+|+.+.. +.. .... ....+++.+++.++....+...+.
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrs-r~~~I~f~~~~~~~i~~~L~~i~~ 174 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRN-ACLMIEFKRLSTRSIVPVLKRICR 174 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhc-cceEEEecCCCHHHHHHHHHHHHH
Confidence 678999999954321 234555444432 2335666664421 111 1111 123789999999999888887765
Q ss_pred ccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcccC---CHHHHHHHHhhhhcccccccccchhhHhhhcc-CCC
Q 005407 84 SIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLRFKR---KIEEWQRVLESELWELEEVDKGLLGPLLLSYR-DLP 159 (698)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~---~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~-~L~ 159 (698)
..... .. .+....|++.++|-.-++...-..+.... +.+.-+.+.. .+....++.++..-+. .-.
T Consensus 175 ~egi~--i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~------~d~~~~if~~l~~i~~~k~~ 243 (482)
T PRK04195 175 KEGIE--CD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR------RDREESIFDALDAVFKARNA 243 (482)
T ss_pred HcCCC--CC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc------CCCCCCHHHHHHHHHCCCCH
Confidence 43332 11 24677888999886655444333333221 1222222211 1223455666664443 222
Q ss_pred hhHHHHHhhhcCCCCCCccCHHHHHHHHHhcCcccc
Q 005407 160 PPLKKCFLYCAIFPKDSMLEKDKLIRLWMAQDYLKV 195 (698)
Q Consensus 160 ~~~k~~fl~~a~fp~~~~i~~~~Li~~wi~eg~~~~ 195 (698)
......+... .++. +.+-.|+.+.+...
T Consensus 244 ~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 244 DQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred HHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 2333322221 1233 34667899888654
No 181
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=34.90 E-value=49 Score=29.63 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=27.0
Q ss_pred ceEEEEEeCCCCC---ChhhHHHHHhhcCCCCCCcEEEEEeCchH
Q 005407 10 KKFFLVLDDVWTE---EPQNWERLWGCLRCGSKGSRILVTTRKVK 51 (698)
Q Consensus 10 kr~LlVLDdvw~~---~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 51 (698)
.==|||||++-.. .....+.+...+....++.-||+|.|+..
T Consensus 95 ~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 95 EYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred CCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 3459999998211 12234555555555556678999999843
No 182
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=33.77 E-value=3e+02 Score=30.63 Aligned_cols=98 Identities=17% Similarity=0.118 Sum_probs=58.2
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEE-EeCchHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILV-TTRKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~Iii-TTR~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.+++-++|+|++-......+..+...+..-.....+|+ ||....+...+... ...++..+++.++..+.+...+-..+
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SR-c~~~~f~~~~~~ei~~~L~~i~~~eg 195 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSR-CQRFDFKRISVEDIVERLKYILDKEG 195 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhH-heEEecCCCCHHHHHHHHHHHHHHcC
Confidence 35667889999954444556666655544334445554 44444444332111 23688889999998888887764433
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPL 111 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPL 111 (698)
.... .+....|++.++|-+.
T Consensus 196 i~i~-----~~al~~ia~~s~G~~R 215 (559)
T PRK05563 196 IEYE-----DEALRLIARAAEGGMR 215 (559)
T ss_pred CCCC-----HHHHHHHHHHcCCCHH
Confidence 2211 2356677888887654
No 183
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=33.57 E-value=3.5e+02 Score=24.14 Aligned_cols=99 Identities=10% Similarity=0.107 Sum_probs=50.2
Q ss_pred CceEEEEEeCC----CCCChhhHHHHHhhcCCCCCCcEEEEEeC-chH----HHHHhCCCCccceeccCCChHhHHHHHH
Q 005407 9 GKKFFLVLDDV----WTEEPQNWERLWGCLRCGSKGSRILVTTR-KVK----VAIAIGTTKSNIIPIELLSDEDCWSIFS 79 (698)
Q Consensus 9 ~kr~LlVLDdv----w~~~~~~~~~l~~~~~~~~~gs~IiiTTR-~~~----v~~~~~~~~~~~~~v~~L~~~~a~~Lf~ 79 (698)
+.+-+||+.+. -......++.+...+....+++.+|+.+. ... ........ ..+++..+++..+......
T Consensus 56 ~~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~-~~~~~~~~~~~~~~~~~i~ 134 (172)
T PF06144_consen 56 GDKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQ-AIVIECKKPKEQELPRWIK 134 (172)
T ss_dssp SSEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTT-EEEEEE----TTTHHHHHH
T ss_pred CCCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcc-cceEEecCCCHHHHHHHHH
Confidence 34445555554 11234678888888877778888888888 222 22333322 2357777888888877777
Q ss_pred HHhhccCCchhhhhHHHHHHHHHHHHhCCChHHH
Q 005407 80 QVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAV 113 (698)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal 113 (698)
..+-..+-... .+.+..++++.+|-+.++
T Consensus 135 ~~~~~~g~~i~-----~~a~~~L~~~~~~d~~~l 163 (172)
T PF06144_consen 135 ERAKKNGLKID-----PDAAQYLIERVGNDLSLL 163 (172)
T ss_dssp HHHHHTT-EE------HHHHHHHHHHHTT-HHHH
T ss_pred HHHHHcCCCCC-----HHHHHHHHHHhChHHHHH
Confidence 77654433211 234556666666665444
No 184
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=32.85 E-value=1.1e+02 Score=30.88 Aligned_cols=71 Identities=13% Similarity=0.178 Sum_probs=39.6
Q ss_pred CceEEEEEeCCCCC-ChhhHHHHHhhcCCCCCCcEEEEEeCchHHH-HHhCCCCccceeccCCChHhHHHHHHH
Q 005407 9 GKKFFLVLDDVWTE-EPQNWERLWGCLRCGSKGSRILVTTRKVKVA-IAIGTTKSNIIPIELLSDEDCWSIFSQ 80 (698)
Q Consensus 9 ~kr~LlVLDdvw~~-~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~~~~~~~~~~v~~L~~~~a~~Lf~~ 80 (698)
+.+-+||+||+-.. .......+...+.....++++|+||....-. ...... -..+.++..+.++..+++..
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR-~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR-CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh-ceEEEeCCCCHHHHHHHHHH
Confidence 34557899999433 2222333444444455677899988754321 111111 12577777778777766554
No 185
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=32.57 E-value=29 Score=20.48 Aligned_cols=11 Identities=45% Similarity=0.410 Sum_probs=6.6
Q ss_pred cCceEeccccc
Q 005407 341 HLRYLALGWNP 351 (698)
Q Consensus 341 ~L~~L~L~~~~ 351 (698)
+|++|+|++|.
T Consensus 3 ~L~~LdL~~N~ 13 (28)
T smart00368 3 SLRELDLSNNK 13 (28)
T ss_pred ccCEEECCCCC
Confidence 45666666665
No 186
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=31.91 E-value=53 Score=29.55 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=36.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchH-HHHHhCCCCccceeccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVK-VAIAIGTTKSNIIPIELL 69 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~v~~L 69 (698)
+++=++|+||+.......+..+...+..-..++++|++|++.+ +....-.. -..+.+.++
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SR-c~~i~~~~l 161 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSR-CQVIRFRPL 161 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTT-SEEEEE---
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhh-ceEEecCCC
Confidence 4567889999966666677777777766677889999998755 44333221 225666554
No 187
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=31.84 E-value=1.8e+02 Score=31.32 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=41.3
Q ss_pred EEEEEeCCCCCChhhH--HHHHhhcCC-CCCCcEEEEEeCch---------HHHHHhCCCCccceeccCCChHhHHHHHH
Q 005407 12 FFLVLDDVWTEEPQNW--ERLWGCLRC-GSKGSRILVTTRKV---------KVAIAIGTTKSNIIPIELLSDEDCWSIFS 79 (698)
Q Consensus 12 ~LlVLDdvw~~~~~~~--~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~ 79 (698)
-+|++||+-......| +.+...++. ...|..||+||... .+..++.. +.++++++++.++-.+++.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~--Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEW--GIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcC--CeEEecCCCCHHHHHHHHH
Confidence 4788899833211111 222222221 12355788888541 22223322 3489999999999999998
Q ss_pred HHhhcc
Q 005407 80 QVALSI 85 (698)
Q Consensus 80 ~~a~~~ 85 (698)
+++-..
T Consensus 282 ~k~~~~ 287 (445)
T PRK12422 282 RKAEAL 287 (445)
T ss_pred HHHHHc
Confidence 887543
No 188
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=30.83 E-value=2.3e+02 Score=29.05 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=47.5
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCch-HHHHHhCCCCccceeccCCChHhHHHHHHHH
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKV-KVAIAIGTTKSNIIPIELLSDEDCWSIFSQV 81 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~ 81 (698)
.+.+=++|+|++-.........+...+..-.+++.+|++|.+. .+...+... ..++++.+++.++..+.+...
T Consensus 108 ~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSR-c~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSR-CQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhh-ceeeeCCCCCHHHHHHHHHHc
Confidence 3455578899995545445556666666555677788777663 343332211 347999999999988877653
No 189
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=30.26 E-value=57 Score=30.63 Aligned_cols=40 Identities=18% Similarity=0.382 Sum_probs=23.0
Q ss_pred eEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchHHH
Q 005407 11 KFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKVA 53 (698)
Q Consensus 11 r~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~ 53 (698)
.-+||+|++.+....++..+... .+.|||||++=-..++.
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~Q~D 159 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPSQID 159 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE------
T ss_pred ceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCceeec
Confidence 46999999977777777777554 46799999998665553
No 190
>KOG4062 consensus 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair [Replication, recombination and repair]
Probab=30.16 E-value=69 Score=28.20 Aligned_cols=25 Identities=32% Similarity=0.627 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhccc
Q 005407 94 KFENIGRQIIGKCKGLPLAVKTLGSLLRFK 123 (698)
Q Consensus 94 ~~~~~~~~i~~~c~GlPLal~~~g~~L~~~ 123 (698)
.+.++|+.| |.|-|.+.+|++++..
T Consensus 108 tY~~iA~~i-----G~PsaaRaVg~A~~~n 132 (178)
T KOG4062|consen 108 TYGQIARRI-----GNPSAARAVGSAMAHN 132 (178)
T ss_pred eHHHHHHHh-----CCcHHHHHHHHHHccC
Confidence 456677777 9999999999999755
No 191
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=25.04 E-value=1.6e+02 Score=28.09 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=55.9
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhcCCC--------CCCc-----------EEEEEeCchHHHHHhCCCCccceeccCCC
Q 005407 10 KKFFLVLDDVWTEEPQNWERLWGCLRCG--------SKGS-----------RILVTTRKVKVAIAIGTTKSNIIPIELLS 70 (698)
Q Consensus 10 kr~LlVLDdvw~~~~~~~~~l~~~~~~~--------~~gs-----------~IiiTTR~~~v~~~~~~~~~~~~~v~~L~ 70 (698)
++-+|.+|.+-.-...+-+.+..+..++ ++++ -|=.|||...+....-..-..+.+++..+
T Consensus 101 ~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~ 180 (233)
T PF05496_consen 101 EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYS 180 (233)
T ss_dssp TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----T
T ss_pred CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCC
Confidence 4567888999655555555565554432 1222 33458887555433222213356899999
Q ss_pred hHhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCCChH
Q 005407 71 DEDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPL 111 (698)
Q Consensus 71 ~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 111 (698)
.+|-.++..+.|..-+... -++.+.+|+++|.|-|-
T Consensus 181 ~~el~~Iv~r~a~~l~i~i-----~~~~~~~Ia~rsrGtPR 216 (233)
T PF05496_consen 181 EEELAKIVKRSARILNIEI-----DEDAAEEIARRSRGTPR 216 (233)
T ss_dssp HHHHHHHHHHCCHCTT-EE------HHHHHHHHHCTTTSHH
T ss_pred HHHHHHHHHHHHHHhCCCc-----CHHHHHHHHHhcCCChH
Confidence 9999999988775544432 23578999999999994
No 192
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=23.50 E-value=2.7e+02 Score=27.55 Aligned_cols=78 Identities=19% Similarity=0.127 Sum_probs=48.7
Q ss_pred HHhhcCCCCCCcEEEEEe----CchHHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHH
Q 005407 30 LWGCLRCGSKGSRILVTT----RKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGK 105 (698)
Q Consensus 30 l~~~~~~~~~gs~IiiTT----R~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~ 105 (698)
+..-...-...+|+|+.- |.-...++-+ ..+++...+++|-...++..+-+..-. .+ ++++++|+++
T Consensus 147 LRRTMEkYs~~~RlIl~cns~SriIepIrSRC----l~iRvpaps~eeI~~vl~~v~~kE~l~--lp---~~~l~rIa~k 217 (351)
T KOG2035|consen 147 LRRTMEKYSSNCRLILVCNSTSRIIEPIRSRC----LFIRVPAPSDEEITSVLSKVLKKEGLQ--LP---KELLKRIAEK 217 (351)
T ss_pred HHHHHHHHhcCceEEEEecCcccchhHHhhhe----eEEeCCCCCHHHHHHHHHHHHHHhccc--Cc---HHHHHHHHHH
Confidence 333333445567888743 3322222221 268899999999999998877554332 12 5789999999
Q ss_pred hCCC-hHHHHHH
Q 005407 106 CKGL-PLAVKTL 116 (698)
Q Consensus 106 c~Gl-PLal~~~ 116 (698)
++|. --||-.+
T Consensus 218 S~~nLRrAllml 229 (351)
T KOG2035|consen 218 SNRNLRRALLML 229 (351)
T ss_pred hcccHHHHHHHH
Confidence 9875 4454444
No 193
>PRK10536 hypothetical protein; Provisional
Probab=23.45 E-value=1.2e+02 Score=29.60 Aligned_cols=44 Identities=14% Similarity=0.302 Sum_probs=30.9
Q ss_pred hcCCceE---EEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchHH
Q 005407 6 SIEGKKF---FLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKV 52 (698)
Q Consensus 6 ~L~~kr~---LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 52 (698)
+++++.+ +||+|.+.+-+..+...+.... +.|||||+|--..++
T Consensus 169 ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk~v~~GD~~Qi 215 (262)
T PRK10536 169 YMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GENVTVIVNGDITQC 215 (262)
T ss_pred HhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCCCEEEEeCChhhc
Confidence 4555554 9999999777766666665544 578999998765443
No 194
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=22.90 E-value=1.9e+02 Score=29.60 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=42.4
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchH-HHHHhCCCCccceeccCCChHhHHHHHHHH
Q 005407 10 KKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVK-VAIAIGTTKSNIIPIELLSDEDCWSIFSQV 81 (698)
Q Consensus 10 kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~ 81 (698)
++=++|+|++...+...-..+...+.....+..+|++|.+.+ +...+... -..+.+.+++.+++.+.+...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SR-c~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSR-CRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHH-hhhhcCCCCCHHHHHHHHHhc
Confidence 333445688855554444455544444334566777777644 44332211 237999999999998888653
No 195
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=21.19 E-value=5.1e+02 Score=25.27 Aligned_cols=73 Identities=8% Similarity=0.062 Sum_probs=39.8
Q ss_pred EEEEEeCCCCCC--------hhhHHHHHhhcCCCCCCcEEEEEeCchHHHH------HhCCCCccceeccCCChHhHHHH
Q 005407 12 FFLVLDDVWTEE--------PQNWERLWGCLRCGSKGSRILVTTRKVKVAI------AIGTTKSNIIPIELLSDEDCWSI 77 (698)
Q Consensus 12 ~LlVLDdvw~~~--------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~------~~~~~~~~~~~v~~L~~~~a~~L 77 (698)
-+|++|++..-. ....+.+..........-.+|+++...+... .....-...+++++++.++-.++
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~I 186 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEI 186 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHH
Confidence 488999994211 1233444444444433345556654433211 01111023688899999999999
Q ss_pred HHHHhhc
Q 005407 78 FSQVALS 84 (698)
Q Consensus 78 f~~~a~~ 84 (698)
+.+.+..
T Consensus 187 l~~~~~~ 193 (261)
T TIGR02881 187 AERMVKE 193 (261)
T ss_pred HHHHHHH
Confidence 8877643
Done!