Query 005407
Match_columns 698
No_of_seqs 351 out of 3056
Neff 10.2
Searched_HMMs 29240
Date Tue Mar 26 00:29:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.6E-32 5.3E-37 301.0 13.7 225 2-253 234-473 (549)
2 1vt4_I APAF-1 related killer D 99.9 1.5E-25 5E-30 248.2 15.7 187 8-244 242-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 8.9E-25 3E-29 265.8 15.9 216 2-251 226-452 (1249)
4 4eco_A Uncharacterized protein 99.9 1.4E-23 4.8E-28 234.9 15.6 114 311-425 198-343 (636)
5 3rgz_A Protein brassinosteroid 99.9 3.1E-23 1.1E-27 237.7 16.3 258 290-571 267-558 (768)
6 4fmz_A Internalin; leucine ric 99.9 1.9E-22 6.7E-27 209.1 19.3 301 290-662 42-344 (347)
7 4ecn_A Leucine-rich repeat pro 99.9 3.4E-22 1.2E-26 227.4 20.0 341 266-664 447-840 (876)
8 4eco_A Uncharacterized protein 99.9 1.2E-22 4.2E-27 227.3 16.1 339 266-664 205-600 (636)
9 4ecn_A Leucine-rich repeat pro 99.9 1.2E-22 4.2E-27 231.0 16.3 296 313-663 442-818 (876)
10 3o6n_A APL1; leucine-rich repe 99.9 1.3E-21 4.3E-26 206.3 19.0 302 290-662 43-350 (390)
11 1z6t_A APAF-1, apoptotic prote 99.9 3.9E-22 1.3E-26 222.1 13.7 209 3-247 227-448 (591)
12 3vq2_A TLR4, TOLL-like recepto 99.9 4E-21 1.4E-25 215.1 22.0 277 266-562 31-361 (606)
13 4fcg_A Uncharacterized protein 99.9 1.9E-21 6.4E-26 199.1 17.0 227 320-660 82-310 (328)
14 3vq2_A TLR4, TOLL-like recepto 99.9 5.8E-21 2E-25 213.8 22.3 346 292-662 32-459 (606)
15 3v47_A TOLL-like receptor 5B a 99.9 5E-21 1.7E-25 206.4 20.6 353 267-662 30-406 (455)
16 3rgz_A Protein brassinosteroid 99.9 4.3E-21 1.5E-25 219.9 21.0 285 266-571 222-534 (768)
17 3oja_B Anopheles plasmodium-re 99.9 3E-21 1E-25 214.8 18.9 302 290-662 49-356 (597)
18 1o6v_A Internalin A; bacterial 99.9 8.7E-21 3E-25 204.7 21.5 325 268-663 47-387 (466)
19 2z81_A CD282 antigen, TOLL-lik 99.9 3.2E-21 1.1E-25 213.2 18.1 374 267-662 26-508 (549)
20 3t6q_A CD180 antigen; protein- 99.9 5E-21 1.7E-25 214.3 19.9 144 266-415 32-180 (606)
21 3t6q_A CD180 antigen; protein- 99.9 4.5E-21 1.6E-25 214.6 19.1 295 321-663 256-559 (606)
22 2z7x_B TOLL-like receptor 1, v 99.9 4.7E-21 1.6E-25 210.2 18.4 366 267-662 21-479 (520)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.8E-20 6.2E-25 207.4 21.0 366 270-662 34-508 (562)
24 1o6v_A Internalin A; bacterial 99.8 3.6E-20 1.2E-24 199.9 20.8 319 290-662 44-364 (466)
25 4fmz_A Internalin; leucine ric 99.8 1.8E-20 6E-25 194.3 17.5 280 315-662 40-322 (347)
26 2z63_A TOLL-like receptor 4, v 99.8 2.8E-20 9.7E-25 206.7 19.3 143 266-414 27-175 (570)
27 2z7x_B TOLL-like receptor 1, v 99.8 4.4E-20 1.5E-24 202.5 20.2 359 271-662 4-455 (520)
28 2id5_A Lingo-1, leucine rich r 99.8 6.7E-20 2.3E-24 198.7 19.8 293 292-637 32-330 (477)
29 2z63_A TOLL-like receptor 4, v 99.8 5.7E-20 2E-24 204.2 19.6 129 266-399 51-188 (570)
30 3bz5_A Internalin-J, INLJ; leu 99.8 5E-20 1.7E-24 197.1 18.3 307 288-661 38-349 (457)
31 3j0a_A TOLL-like receptor 5; m 99.8 1.8E-19 6.2E-24 208.6 24.4 350 265-662 22-437 (844)
32 3o6n_A APL1; leucine-rich repe 99.8 2E-20 6.8E-25 197.1 13.9 281 317-662 43-329 (390)
33 2z81_A CD282 antigen, TOLL-lik 99.8 7.5E-20 2.6E-24 202.2 18.1 129 292-425 26-161 (549)
34 2id5_A Lingo-1, leucine rich r 99.8 1.2E-19 4.3E-24 196.6 18.7 292 319-662 32-331 (477)
35 3j0a_A TOLL-like receptor 5; m 99.8 2.9E-19 9.8E-24 207.0 22.5 323 290-662 22-392 (844)
36 1ziw_A TOLL-like receptor 3; i 99.8 1.6E-19 5.3E-24 205.0 18.7 151 267-423 25-182 (680)
37 3bz5_A Internalin-J, INLJ; leu 99.8 4.1E-19 1.4E-23 190.1 19.6 302 267-644 42-355 (457)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 4.6E-19 1.6E-23 196.1 20.6 339 291-662 30-484 (562)
39 3oja_B Anopheles plasmodium-re 99.8 8.4E-20 2.9E-24 203.2 14.3 281 318-663 50-336 (597)
40 1ziw_A TOLL-like receptor 3; i 99.8 1E-18 3.5E-23 198.2 22.5 251 292-562 25-283 (680)
41 3v47_A TOLL-like receptor 5B a 99.8 1.5E-18 5.1E-23 187.0 22.3 331 292-662 30-382 (455)
42 4fcg_A Uncharacterized protein 99.8 5.7E-19 1.9E-23 180.6 15.5 218 292-636 81-310 (328)
43 2ft3_A Biglycan; proteoglycan, 99.8 1.2E-18 4.3E-23 179.0 15.1 288 293-662 34-331 (332)
44 1xku_A Decorin; proteoglycan, 99.8 2.5E-18 8.4E-23 176.7 16.7 92 321-419 33-128 (330)
45 2ft3_A Biglycan; proteoglycan, 99.8 7.8E-18 2.7E-22 173.0 17.4 292 268-638 34-331 (332)
46 1xku_A Decorin; proteoglycan, 99.8 8E-18 2.7E-22 172.8 16.9 97 320-420 53-153 (330)
47 4g8a_A TOLL-like receptor 4; l 99.7 1.4E-17 4.7E-22 187.5 17.8 128 266-399 51-184 (635)
48 1ogq_A PGIP-2, polygalacturona 99.7 5.6E-18 1.9E-22 172.2 11.0 250 293-566 51-306 (313)
49 1ogq_A PGIP-2, polygalacturona 99.7 4.2E-18 1.5E-22 173.1 9.6 253 319-644 50-308 (313)
50 2z80_A TOLL-like receptor 2, v 99.7 5.5E-18 1.9E-22 175.8 9.3 97 320-419 53-156 (353)
51 1jl5_A Outer protein YOPM; leu 99.7 7E-17 2.4E-21 172.5 17.3 92 320-424 92-185 (454)
52 1jl5_A Outer protein YOPM; leu 99.7 2.6E-16 8.8E-21 168.2 20.4 73 319-398 131-205 (454)
53 3g06_A SSPH2 (leucine-rich rep 99.7 2.8E-16 9.5E-21 173.1 20.0 234 319-663 61-296 (622)
54 2z66_A Variable lymphocyte rec 99.7 1.3E-16 4.6E-21 161.8 13.4 86 328-418 18-107 (306)
55 4g8a_A TOLL-like receptor 4; l 99.7 3.7E-16 1.3E-20 175.9 18.2 128 292-424 52-185 (635)
56 3zyj_A Leucine-rich repeat-con 99.7 1.1E-15 3.7E-20 163.5 20.3 93 323-420 47-144 (440)
57 3zyi_A Leucine-rich repeat-con 99.7 1.1E-15 3.8E-20 164.0 19.5 93 323-420 58-155 (452)
58 3zyi_A Leucine-rich repeat-con 99.6 1.5E-15 5.2E-20 162.9 16.3 220 292-562 75-301 (452)
59 3zyj_A Leucine-rich repeat-con 99.6 2E-15 6.7E-20 161.5 16.9 220 292-562 64-290 (440)
60 2z66_A Variable lymphocyte rec 99.6 8.1E-16 2.8E-20 156.0 13.0 223 292-562 28-259 (306)
61 2z80_A TOLL-like receptor 2, v 99.6 9.6E-16 3.3E-20 158.8 13.0 250 292-562 52-312 (353)
62 1z7x_W Ribonuclease inhibitor; 99.6 5.9E-19 2E-23 190.5 -11.9 365 268-662 4-409 (461)
63 3o53_A Protein LRIM1, AGAP0063 99.6 4.6E-16 1.6E-20 158.5 9.7 136 499-667 141-278 (317)
64 1ozn_A Reticulon 4 receptor; N 99.6 9.3E-15 3.2E-19 146.5 19.0 92 322-417 14-110 (285)
65 3o53_A Protein LRIM1, AGAP0063 99.6 7.5E-16 2.6E-20 156.9 9.2 215 315-562 30-248 (317)
66 3g06_A SSPH2 (leucine-rich rep 99.6 1.3E-14 4.3E-19 159.9 19.5 253 268-638 41-295 (622)
67 3oja_A Leucine-rich immune mol 99.6 1.1E-15 3.8E-20 164.9 10.7 233 341-659 35-270 (487)
68 3ogk_B Coronatine-insensitive 99.6 6.8E-17 2.3E-21 180.2 -0.1 65 596-666 461-527 (592)
69 3ogk_B Coronatine-insensitive 99.6 1.4E-16 4.9E-21 177.6 2.0 352 267-662 112-499 (592)
70 2xwt_C Thyrotropin receptor; s 99.6 1E-14 3.5E-19 142.0 13.1 76 326-405 20-97 (239)
71 1ozn_A Reticulon 4 receptor; N 99.5 7.5E-15 2.6E-19 147.2 9.5 62 499-562 174-236 (285)
72 1p9a_G Platelet glycoprotein I 99.5 8.7E-14 3E-18 139.3 17.0 59 336-398 6-65 (290)
73 2xwt_C Thyrotropin receptor; s 99.5 4.8E-14 1.6E-18 137.2 14.4 216 343-664 14-239 (239)
74 4ay9_X Follicle-stimulating ho 99.5 5.9E-14 2E-18 144.9 15.0 230 328-636 20-255 (350)
75 1wwl_A Monocyte differentiatio 99.5 1E-14 3.5E-19 148.1 8.6 34 627-662 274-307 (312)
76 1h6u_A Internalin H; cell adhe 99.5 5.3E-14 1.8E-18 142.4 13.4 193 318-569 40-234 (308)
77 1h6u_A Internalin H; cell adhe 99.5 6.1E-14 2.1E-18 141.9 13.7 198 336-645 37-234 (308)
78 1wwl_A Monocyte differentiatio 99.5 3.7E-15 1.3E-19 151.4 3.7 246 290-562 41-307 (312)
79 2z62_A TOLL-like receptor 4, v 99.5 5.7E-14 1.9E-18 140.0 11.7 87 329-419 19-107 (276)
80 2z62_A TOLL-like receptor 4, v 99.5 2.2E-13 7.4E-18 135.8 14.7 71 345-420 12-84 (276)
81 2ast_B S-phase kinase-associat 99.5 3.1E-15 1.1E-19 154.0 1.1 194 294-562 49-258 (336)
82 3oja_A Leucine-rich immune mol 99.5 1.2E-13 4.1E-18 149.0 13.5 213 291-562 33-248 (487)
83 3rfs_A Internalin B, repeat mo 99.5 1.4E-13 4.7E-18 136.7 12.8 78 336-418 37-115 (272)
84 1z7x_W Ribonuclease inhibitor; 99.5 9.9E-17 3.4E-21 173.0 -11.3 336 292-662 3-381 (461)
85 2o6q_A Variable lymphocyte rec 99.5 4.5E-13 1.6E-17 132.9 15.3 63 498-562 153-216 (270)
86 2p1m_B Transport inhibitor res 99.5 2.1E-15 7.3E-20 168.2 -2.1 84 290-373 154-244 (594)
87 1p9a_G Platelet glycoprotein I 99.5 4.5E-13 1.5E-17 134.1 14.4 62 499-562 145-206 (290)
88 2o6q_A Variable lymphocyte rec 99.5 1E-12 3.6E-17 130.3 16.9 74 321-398 18-95 (270)
89 3rfs_A Internalin B, repeat mo 99.4 1E-12 3.4E-17 130.5 15.6 99 316-419 38-140 (272)
90 4ay9_X Follicle-stimulating ho 99.4 1.9E-12 6.4E-17 133.6 17.6 249 333-660 3-255 (350)
91 2ast_B S-phase kinase-associat 99.4 3E-14 1E-18 146.5 2.5 218 269-561 49-282 (336)
92 2ca6_A RAN GTPase-activating p 99.4 4.7E-15 1.6E-19 155.7 -3.7 91 468-562 182-285 (386)
93 2p1m_B Transport inhibitor res 99.4 1.1E-14 3.8E-19 162.4 -3.0 357 267-663 105-518 (594)
94 1h6t_A Internalin B; cell adhe 99.4 1.6E-12 5.6E-17 130.2 10.9 174 336-567 42-215 (291)
95 1m9s_A Internalin B; cell inva 99.3 3.4E-12 1.2E-16 140.4 13.0 170 336-562 39-208 (605)
96 4glp_A Monocyte differentiatio 99.3 1.4E-12 4.8E-17 132.2 9.2 200 320-562 92-305 (310)
97 4glp_A Monocyte differentiatio 99.3 2.1E-12 7E-17 131.0 9.9 83 338-420 89-177 (310)
98 3m19_A Variable lymphocyte rec 99.3 1.3E-11 4.4E-16 120.8 15.3 169 321-562 16-190 (251)
99 2ca6_A RAN GTPase-activating p 99.3 2.9E-13 1E-17 141.9 0.6 245 284-562 24-314 (386)
100 3m19_A Variable lymphocyte rec 99.3 2.5E-11 8.4E-16 118.8 14.1 176 340-609 14-190 (251)
101 1xeu_A Internalin C; cellular 99.3 4.9E-12 1.7E-16 124.5 8.9 169 318-568 18-188 (263)
102 4ezg_A Putative uncharacterize 99.3 8.3E-12 2.8E-16 117.2 9.3 152 336-562 40-192 (197)
103 1h6t_A Internalin B; cell adhe 99.2 3.3E-11 1.1E-15 120.6 11.1 167 318-541 45-213 (291)
104 3cvr_A Invasion plasmid antige 99.2 7.7E-11 2.6E-15 128.1 14.6 67 341-418 60-126 (571)
105 1dce_A Protein (RAB geranylger 99.2 7.8E-13 2.7E-17 144.6 -2.3 118 503-657 442-566 (567)
106 1m9s_A Internalin B; cell inva 99.2 3.1E-11 1.1E-15 132.7 10.4 169 316-541 40-210 (605)
107 3cvr_A Invasion plasmid antige 99.2 6.7E-11 2.3E-15 128.6 10.9 86 320-419 60-147 (571)
108 4ezg_A Putative uncharacterize 99.1 1.6E-10 5.3E-15 108.4 10.9 143 268-422 45-191 (197)
109 3goz_A Leucine-rich repeat-con 99.1 7.8E-12 2.7E-16 129.7 0.9 213 313-562 16-264 (362)
110 2ell_A Acidic leucine-rich nuc 99.1 1.4E-10 5E-15 105.6 9.1 128 292-425 24-160 (168)
111 3e6j_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 108.9 11.6 127 292-424 40-171 (229)
112 3goz_A Leucine-rich repeat-con 99.1 2E-11 7E-16 126.5 1.8 241 286-562 16-295 (362)
113 2ell_A Acidic leucine-rich nuc 99.1 3.9E-10 1.3E-14 102.7 10.1 134 266-407 23-165 (168)
114 2je0_A Acidic leucine-rich nuc 99.1 2E-10 6.7E-15 102.4 7.3 123 291-419 16-147 (149)
115 2v9t_B SLIT homolog 2 protein 99.1 5.8E-10 2E-14 106.4 11.1 127 292-424 32-164 (220)
116 2v70_A SLIT-2, SLIT homolog 2 99.1 7.5E-10 2.6E-14 105.6 11.4 129 292-424 32-165 (220)
117 2v9t_B SLIT homolog 2 protein 99.0 9.6E-10 3.3E-14 104.9 12.1 72 323-398 15-90 (220)
118 2o6s_A Variable lymphocyte rec 99.0 6.1E-10 2.1E-14 105.4 10.6 156 328-562 18-176 (208)
119 4b8c_D Glucose-repressible alc 99.0 2.8E-10 9.7E-15 128.5 9.3 111 312-425 217-329 (727)
120 1a9n_A U2A', U2A'; complex (nu 99.0 3E-10 1E-14 104.4 7.1 128 287-423 14-151 (176)
121 2je0_A Acidic leucine-rich nuc 99.0 8.1E-10 2.8E-14 98.3 9.1 125 266-397 16-149 (149)
122 3e6j_A Variable lymphocyte rec 99.0 2.7E-09 9.1E-14 102.5 13.2 72 323-398 23-98 (229)
123 2o6s_A Variable lymphocyte rec 99.0 1.8E-09 6.1E-14 102.2 10.9 127 291-423 27-159 (208)
124 2xot_A Amphoterin-induced prot 98.9 1.2E-09 4E-14 113.1 8.4 93 323-420 22-120 (361)
125 1xeu_A Internalin C; cellular 98.9 4.9E-09 1.7E-13 103.0 12.1 141 268-424 42-184 (263)
126 1dce_A Protein (RAB geranylger 98.9 2.6E-09 8.7E-14 116.8 10.1 102 320-426 442-547 (567)
127 2v70_A SLIT-2, SLIT homolog 2 98.9 5E-09 1.7E-13 99.9 10.8 129 267-400 32-165 (220)
128 1a9n_A U2A', U2A'; complex (nu 98.9 5.7E-09 1.9E-13 95.7 8.8 124 266-399 18-151 (176)
129 4b8c_D Glucose-repressible alc 98.9 3.1E-09 1E-13 120.0 8.4 117 284-406 216-334 (727)
130 3sb4_A Hypothetical leucine ri 98.8 1.1E-08 3.7E-13 104.4 11.3 123 500-657 200-327 (329)
131 1w8a_A SLIT protein; signaling 98.8 8E-09 2.7E-13 96.1 8.7 102 320-423 30-137 (192)
132 1ds9_A Outer arm dynein; leuci 98.8 2.7E-10 9.2E-15 106.9 -2.5 68 328-398 36-103 (198)
133 3sb4_A Hypothetical leucine ri 98.8 1.3E-08 4.5E-13 103.7 9.7 100 501-633 225-327 (329)
134 2wfh_A SLIT homolog 2 protein 98.8 2.3E-08 7.8E-13 93.1 10.4 101 320-423 32-137 (193)
135 2xot_A Amphoterin-induced prot 98.8 1.3E-08 4.5E-13 105.1 9.4 128 292-425 39-176 (361)
136 1w8a_A SLIT protein; signaling 98.8 2.2E-08 7.6E-13 93.1 9.5 105 293-400 30-138 (192)
137 2wfh_A SLIT homolog 2 protein 98.7 2.5E-08 8.7E-13 92.7 9.2 99 323-425 14-115 (193)
138 2r9u_A Variable lymphocyte rec 98.7 2.2E-08 7.5E-13 91.4 8.4 98 323-425 16-118 (174)
139 1ds9_A Outer arm dynein; leuci 98.7 2.8E-10 9.5E-15 106.8 -5.6 101 315-420 44-148 (198)
140 3g39_A Variable lymphocyte rec 98.7 5.1E-08 1.7E-12 88.6 8.3 99 322-425 12-115 (170)
141 2o6r_A Variable lymphocyte rec 98.6 1.1E-07 3.8E-12 87.1 9.9 101 320-423 29-135 (177)
142 2r9u_A Variable lymphocyte rec 98.6 1.7E-07 5.7E-12 85.4 9.0 84 319-405 33-121 (174)
143 2o6r_A Variable lymphocyte rec 98.5 3.9E-07 1.4E-11 83.4 10.3 105 291-400 27-136 (177)
144 3g39_A Variable lymphocyte rec 98.5 3.8E-07 1.3E-11 82.7 8.5 79 319-399 30-113 (170)
145 4fdw_A Leucine rich hypothetic 98.3 2.1E-05 7.2E-10 81.8 19.5 124 502-660 248-379 (401)
146 2ifg_A High affinity nerve gro 98.3 7E-07 2.4E-11 91.6 7.9 94 328-425 20-116 (347)
147 4fs7_A Uncharacterized protein 98.2 4.2E-05 1.4E-09 79.7 19.0 61 285-349 64-126 (394)
148 4fdw_A Leucine rich hypothetic 98.1 3.8E-05 1.3E-09 79.8 16.1 94 468-568 266-361 (401)
149 3e4g_A ATP synthase subunit S, 98.0 1E-06 3.6E-11 78.8 1.2 39 528-566 61-100 (176)
150 2ifg_A High affinity nerve gro 97.9 1.4E-05 4.8E-10 81.8 7.7 82 315-398 27-113 (347)
151 1w5s_A Origin recognition comp 97.9 5.2E-05 1.8E-09 79.6 12.1 199 9-222 137-372 (412)
152 3e4g_A ATP synthase subunit S, 97.9 1.8E-06 6.1E-11 77.2 0.3 89 551-667 61-155 (176)
153 2ra8_A Uncharacterized protein 97.9 1.4E-06 4.9E-11 88.9 -0.4 142 499-662 169-318 (362)
154 4fs7_A Uncharacterized protein 97.8 0.00047 1.6E-08 71.7 17.9 60 312-373 64-126 (394)
155 2qen_A Walker-type ATPase; unk 97.8 0.00061 2.1E-08 69.5 17.0 201 10-244 128-348 (350)
156 2fna_A Conserved hypothetical 97.7 0.00045 1.5E-08 70.7 15.5 200 10-243 137-355 (357)
157 1njg_A DNA polymerase III subu 97.5 0.00035 1.2E-08 67.1 9.8 107 8-120 124-231 (250)
158 4gt6_A Cell surface protein; l 97.5 0.00099 3.4E-08 69.2 13.7 124 498-659 261-386 (394)
159 2ra8_A Uncharacterized protein 97.5 5.2E-05 1.8E-09 77.4 3.6 35 527-561 278-317 (362)
160 3un9_A NLR family member X1; l 97.4 3.7E-05 1.3E-09 79.1 1.3 64 333-398 176-249 (372)
161 3un9_A NLR family member X1; l 97.4 2.5E-05 8.5E-10 80.4 -0.2 130 291-424 100-251 (372)
162 4gt6_A Cell surface protein; l 97.3 0.015 5.2E-07 60.1 20.3 108 523-662 260-368 (394)
163 3rw6_A Nuclear RNA export fact 97.2 0.00015 5E-09 70.1 3.6 81 337-420 167-259 (267)
164 3rw6_A Nuclear RNA export fact 97.2 0.00023 7.7E-09 68.8 4.5 77 316-394 167-257 (267)
165 1io0_A Tropomodulin; LRR prote 97.2 0.00022 7.6E-09 65.2 4.0 110 287-398 31-161 (185)
166 4h09_A Hypothetical leucine ri 96.7 0.043 1.5E-06 56.3 16.9 13 315-327 65-77 (379)
167 4h09_A Hypothetical leucine ri 96.5 0.055 1.9E-06 55.5 16.5 119 268-396 47-166 (379)
168 2chg_A Replication factor C sm 96.4 0.0086 2.9E-07 56.1 8.8 105 9-119 101-206 (226)
169 1io0_A Tropomodulin; LRR prote 96.4 0.00097 3.3E-08 60.9 1.9 84 313-398 30-133 (185)
170 2v1u_A Cell division control p 96.3 0.078 2.7E-06 54.4 16.1 194 8-222 128-352 (387)
171 2qby_B CDC6 homolog 3, cell di 96.3 0.047 1.6E-06 56.1 14.3 201 3-223 126-341 (384)
172 1hqc_A RUVB; extended AAA-ATPa 96.0 0.034 1.2E-06 55.6 11.0 190 10-219 90-323 (324)
173 1fnn_A CDC6P, cell division co 95.6 0.13 4.5E-06 52.8 14.0 197 9-223 124-353 (389)
174 1sxj_B Activator 1 37 kDa subu 95.5 0.025 8.7E-07 56.5 7.7 106 8-119 105-212 (323)
175 1iqp_A RFCS; clamp loader, ext 93.7 0.13 4.4E-06 51.4 7.8 106 9-120 109-215 (327)
176 2qby_A CDC6 homolog 1, cell di 93.1 0.32 1.1E-05 49.7 9.8 197 9-221 127-348 (386)
177 1jr3_A DNA polymerase III subu 91.9 0.5 1.7E-05 48.0 9.4 104 8-117 117-221 (373)
178 3rfe_A Platelet glycoprotein I 91.7 0.19 6.5E-06 42.3 4.9 34 341-375 32-66 (130)
179 3rfe_A Platelet glycoprotein I 90.8 0.29 9.8E-06 41.2 5.0 53 343-399 11-66 (130)
180 2chq_A Replication factor C sm 89.3 1.2 4.2E-05 43.8 9.3 104 9-118 101-205 (319)
181 3bos_A Putative DNA replicatio 85.1 1.3 4.6E-05 41.3 6.4 102 10-118 104-218 (242)
182 1sxj_E Activator 1 40 kDa subu 84.8 1.8 6.2E-05 43.4 7.6 103 10-117 134-237 (354)
183 2z4s_A Chromosomal replication 82.4 3.5 0.00012 42.8 8.7 99 10-115 194-304 (440)
184 1a5t_A Delta prime, HOLB; zinc 81.1 7.2 0.00025 38.6 10.2 99 8-117 106-205 (334)
185 1pgv_A TMD-1, tropomodulin TMD 80.3 1.3 4.3E-05 40.1 3.8 11 291-301 40-50 (197)
186 1sxj_D Activator 1 41 kDa subu 74.3 6.4 0.00022 39.2 7.6 103 9-117 132-235 (353)
187 1pgv_A TMD-1, tropomodulin TMD 72.2 3.8 0.00013 36.9 4.6 59 316-375 38-109 (197)
188 1jr3_D DNA polymerase III, del 72.0 22 0.00075 35.1 10.9 102 8-115 74-183 (343)
189 1d2n_A N-ethylmaleimide-sensit 69.3 17 0.0006 34.4 9.1 116 8-134 122-259 (272)
190 3pfi_A Holliday junction ATP-d 69.2 65 0.0022 31.4 13.7 104 9-117 105-227 (338)
191 1sxj_A Activator 1 95 kDa subu 53.4 32 0.0011 36.3 8.3 102 9-118 147-254 (516)
192 1l8q_A Chromosomal replication 53.3 15 0.0005 36.1 5.4 92 11-111 99-202 (324)
193 3syl_A Protein CBBX; photosynt 49.3 46 0.0016 32.0 8.2 70 11-84 131-219 (309)
194 3u61_B DNA polymerase accessor 47.5 25 0.00087 34.3 6.0 95 9-112 104-211 (324)
195 3h4m_A Proteasome-activating n 45.9 42 0.0014 31.9 7.2 72 39-116 155-230 (285)
196 3uk6_A RUVB-like 2; hexameric 42.5 91 0.0031 30.8 9.4 93 12-115 191-301 (368)
197 2qp9_X Vacuolar protein sortin 42.2 1.6E+02 0.0054 29.0 11.0 101 9-118 142-262 (355)
198 3eie_A Vacuolar protein sortin 41.2 2.3E+02 0.0078 27.3 11.9 101 9-118 109-229 (322)
199 1sxj_C Activator 1 40 kDa subu 40.4 80 0.0027 30.9 8.5 98 9-112 109-207 (340)
200 2qz4_A Paraplegin; AAA+, SPG7, 40.2 1.4E+02 0.0049 27.4 10.0 105 9-117 97-222 (262)
201 2gno_A DNA polymerase III, gam 36.4 35 0.0012 33.1 4.9 71 9-82 81-152 (305)
202 1xwi_A SKD1 protein; VPS4B, AA 35.2 3E+02 0.01 26.4 11.7 101 9-118 104-224 (322)
203 3te6_A Regulatory protein SIR3 34.7 1.1E+02 0.0036 29.8 8.0 108 8-120 130-283 (318)
204 3pvs_A Replication-associated 34.3 1.3E+02 0.0043 31.0 9.0 106 8-116 104-214 (447)
205 3d8b_A Fidgetin-like protein 1 31.0 2E+02 0.0067 28.3 9.6 74 40-118 221-296 (357)
206 3ec2_A DNA replication protein 27.4 32 0.0011 30.0 2.7 38 11-48 101-141 (180)
207 3vfd_A Spastin; ATPase, microt 24.9 3.8E+02 0.013 26.5 10.6 50 63-117 276-326 (389)
208 2vda_B Maltoporin; sugar trans 24.7 34 0.0012 18.5 1.3 17 106-122 8-24 (28)
209 2kjq_A DNAA-related protein; s 22.3 51 0.0017 27.8 2.8 39 11-49 84-124 (149)
210 3b9p_A CG5977-PA, isoform A; A 20.9 5.1E+02 0.017 24.1 11.3 69 40-117 159-233 (297)
211 2zan_A Vacuolar protein sortin 20.9 5.9E+02 0.02 25.7 11.2 104 9-117 226-345 (444)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.97 E-value=1.6e-32 Score=300.97 Aligned_cols=225 Identities=20% Similarity=0.281 Sum_probs=175.5
Q ss_pred hhhhhcCCc-eEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchHHHHHhCCCCccceeccCCChHhHHHHHHH
Q 005407 2 QLHESIEGK-KFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKVAIAIGTTKSNIIPIELLSDEDCWSIFSQ 80 (698)
Q Consensus 2 ~l~~~L~~k-r~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~ 80 (698)
.+++.|++| ||||||||||+.+...|.. .+||+||||||++.++..++.. ..+|+|++|+.++||+||.+
T Consensus 234 ~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~~~~~~-~~~~~l~~L~~~ea~~Lf~~ 304 (549)
T 2a5y_B 234 MICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISNAASQT-CEFIEVTSLEIDECYDFLEA 304 (549)
T ss_dssp HHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGGGCCSC-EEEEECCCCCHHHHHHHHHH
T ss_pred HHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHHHcCCC-CeEEECCCCCHHHHHHHHHH
Confidence 467788896 9999999999743223332 1799999999999999877532 24799999999999999999
Q ss_pred HhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcccCCHHHHHHHHhhhhcccccccccchhhHhhhccCCCh
Q 005407 81 VALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLRFKRKIEEWQRVLESELWELEEVDKGLLGPLLLSYRDLPP 160 (698)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~ 160 (698)
+||.... .+.+.+++++|+++|+|+||||+++|+.|+.+ . ..|...+....+.. ....+..++.+||+.||.
T Consensus 305 ~a~~~~~----~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~ 376 (549)
T 2a5y_B 305 YGMPMPV----GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNKLESR--GLVGVECITPYSYKSLAM 376 (549)
T ss_dssp TSCCCC------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHHHHHH--CSSTTCCCSSSSSSSHHH
T ss_pred HhcCCCC----chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHHhhcc--cHHHHHHHHhcccccccH
Confidence 9986532 35678899999999999999999999999755 3 23333333322221 246799999999999999
Q ss_pred hHHHHHh-----------hhcCCCCCCccCHHHHHHHHHhc--CccccCC-CccHHHHHHHHHHHHHhCCCcccccccCC
Q 005407 161 PLKKCFL-----------YCAIFPKDSMLEKDKLIRLWMAQ--DYLKVKG-REDMEVVGEEYFESLAMHSLFQDFERSEH 226 (698)
Q Consensus 161 ~~k~~fl-----------~~a~fp~~~~i~~~~Li~~wi~e--g~~~~~~-~~~~~~~~~~~l~~L~~~~ll~~~~~~~~ 226 (698)
++|.||+ |||+||+++.|+ ++.|+|+ ||+...+ ....+++++ ++++|++++|++.....
T Consensus 377 ~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~-- 449 (549)
T 2a5y_B 377 ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM-- 449 (549)
T ss_dssp HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS--
T ss_pred HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC--
Confidence 9999999 999999999988 8999999 9998765 566778777 99999999999976543
Q ss_pred CCeeEEEEEechhHHHHHHHhccccee
Q 005407 227 DGRKIIRCKMHDIVHDFSQFLTKTECS 253 (698)
Q Consensus 227 ~~~~~~~~~~hdlv~~~~~~~~~~~~~ 253 (698)
+.. +|+|||++|++|+.++.+++.
T Consensus 450 -~~~--~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 450 -PVL--TFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp -SSC--EEECCHHHHHHHHTTSCTHHH
T ss_pred -Cce--EEEeChHHHHHHHHHHHHHHH
Confidence 222 799999999999998877654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.93 E-value=1.5e-25 Score=248.24 Aligned_cols=187 Identities=18% Similarity=0.241 Sum_probs=151.6
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchHHHHHhCCCCccceecc------CCChHhHHHHHHHH
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKVAIAIGTTKSNIIPIE------LLSDEDCWSIFSQV 81 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~v~------~L~~~~a~~Lf~~~ 81 (698)
.+||+||||||||+ ..+|+.+ .+|||||||||++.++..+.... .|+++ +|+.+|||+||+++
T Consensus 242 ~~KRvLLVLDDVwd--~eqLe~f-------~pGSRILVTTRd~~Va~~l~g~~--vy~LeL~d~dL~LS~eEA~eLF~~~ 310 (1221)
T 1vt4_I 242 PYENCLLVLLNVQN--AKAWNAF-------NLSCKILLTTRFKQVTDFLSAAT--TTHISLDHHSMTLTPDEVKSLLLKY 310 (1221)
T ss_dssp TTSSCEEEEESCCC--HHHHHHH-------HSSCCEEEECSCSHHHHHHHHHS--SCEEEECSSSSCCCHHHHHHHHHHH
T ss_pred cCCCEEEEEeCcCh--HHHHHhh-------CCCeEEEEeccChHHHHhcCCCe--EEEecCccccCCcCHHHHHHHHHHH
Confidence 68999999999987 4667654 27899999999999987554322 57777 99999999999998
Q ss_pred hhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcccC-CHHHHHHHHhhhhcccccccccchhhHhhhccCCCh
Q 005407 82 ALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLRFKR-KIEEWQRVLESELWELEEVDKGLLGPLLLSYRDLPP 160 (698)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~-~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~ 160 (698)
. +... .+++.++ |+|+||||+++|+.|+.+. +.+.|+.. ....+..++++||+.|++
T Consensus 311 ~-g~~~--------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I~aaLelSYd~Lp~ 368 (1221)
T 1vt4_I 311 L-DCRP--------QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTTIIESSLNVLEP 368 (1221)
T ss_dssp H-CCCT--------TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHHHHHHHHHHHHSCT
T ss_pred c-CCCH--------HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHHHHHHHHHHHhCCH
Confidence 3 3211 2344444 9999999999999998773 67888652 135689999999999999
Q ss_pred hH-HHHHhhhcCCCCCCccCHHHHHHHHHhcCccccCCCccHHHHHHHHHHHHHhCCCcccccccCCCCeeEEEEEechh
Q 005407 161 PL-KKCFLYCAIFPKDSMLEKDKLIRLWMAQDYLKVKGREDMEVVGEEYFESLAMHSLFQDFERSEHDGRKIIRCKMHDI 239 (698)
Q Consensus 161 ~~-k~~fl~~a~fp~~~~i~~~~Li~~wi~eg~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~~hdl 239 (698)
++ |.||++||+||+++.|.++.++.+|+++| ++.++.++++|++++|++... +.. +++|||+
T Consensus 369 eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~eLvdRSLLq~d~-----~~~--rYrMHDL 431 (1221)
T 1vt4_I 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNKLHKYSLVEKQP-----KES--TISIPSI 431 (1221)
T ss_dssp THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHHHHTSSSSSBCS-----SSS--EEBCCCH
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHHHHhhCCEEEeC-----CCC--EEEehHH
Confidence 99 99999999999999999999999999987 134788999999999998731 111 7899999
Q ss_pred HHHHH
Q 005407 240 VHDFS 244 (698)
Q Consensus 240 v~~~~ 244 (698)
+++++
T Consensus 432 llELr 436 (1221)
T 1vt4_I 432 YLELK 436 (1221)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.91 E-value=8.9e-25 Score=265.83 Aligned_cols=216 Identities=24% Similarity=0.322 Sum_probs=170.3
Q ss_pred hhhhhcCCc--eEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchHHHHHhCCCCccceeccC-CChHhHHHHH
Q 005407 2 QLHESIEGK--KFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKVAIAIGTTKSNIIPIEL-LSDEDCWSIF 78 (698)
Q Consensus 2 ~l~~~L~~k--r~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~v~~-L~~~~a~~Lf 78 (698)
++++.+.+| |+||||||||+ ..+|+. .++|||||||||++.++..+... ...+++++ |+.++|++||
T Consensus 226 ~l~~~l~~~~~~~LlvlDd~~~--~~~~~~-------~~~~~~ilvTtR~~~~~~~~~~~-~~~~~~~~~l~~~~a~~l~ 295 (1249)
T 3sfz_A 226 RLRVLMLRKHPRSLLILDDVWD--PWVLKA-------FDNQCQILLTTRDKSVTDSVMGP-KHVVPVESGLGREKGLEIL 295 (1249)
T ss_dssp HHHHHTSSSSCSCEEEEESCCC--HHHHTT-------TCSSCEEEEEESSTTTTTTCCSC-BCCEECCSSCCHHHHHHHH
T ss_pred HHHHHHhccCCCEEEEEecCCC--HHHHHh-------hcCCCEEEEEcCCHHHHHhhcCC-ceEEEecCCCCHHHHHHHH
Confidence 355666665 99999999986 333333 37899999999999998553222 34899996 9999999999
Q ss_pred HHHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcccCCHHHHHHHHhhhhccc----cc----ccccchhh
Q 005407 79 SQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLRFKRKIEEWQRVLESELWEL----EE----VDKGLLGP 150 (698)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~----~~----~~~~i~~~ 150 (698)
...++... +.+.+.+++|+++|+|+||||+++|+.|+.+. ..|..+++...... .. ....+..+
T Consensus 296 ~~~~~~~~------~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 367 (1249)
T 3sfz_A 296 SLFVNMKK------EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEA 367 (1249)
T ss_dssp HHHHTSCS------TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHH
T ss_pred HHhhCCCh------hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHH
Confidence 99885432 33456799999999999999999999997664 46887776532221 11 11358899
Q ss_pred HhhhccCCChhHHHHHhhhcCCCCCCccCHHHHHHHHHhcCccccCCCccHHHHHHHHHHHHHhCCCcccccccCCCCee
Q 005407 151 LLLSYRDLPPPLKKCFLYCAIFPKDSMLEKDKLIRLWMAQDYLKVKGREDMEVVGEEYFESLAMHSLFQDFERSEHDGRK 230 (698)
Q Consensus 151 l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~Li~~wi~eg~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~ 230 (698)
+.+||+.|++++|.||+|||+||+++.|+++.+++.|.++ ++.++.++++|++++|++.... ++..
T Consensus 368 l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~~sl~~~~~~---~~~~ 433 (1249)
T 3sfz_A 368 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVNKSLLFCNRN---GKSF 433 (1249)
T ss_dssp HHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSCEEEES---SSSE
T ss_pred HHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHHhccceEEecC---CCce
Confidence 9999999999999999999999999999999999999765 3567889999999999985432 3333
Q ss_pred EEEEEechhHHHHHHHhcccc
Q 005407 231 IIRCKMHDIVHDFSQFLTKTE 251 (698)
Q Consensus 231 ~~~~~~hdlv~~~~~~~~~~~ 251 (698)
+|+||+++|++++....++
T Consensus 434 --~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 434 --CYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp --EEECCHHHHHHHHHHTGGG
T ss_pred --EEEecHHHHHHHHhhhhHH
Confidence 7999999999999876654
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1.4e-23 Score=234.90 Aligned_cols=114 Identities=20% Similarity=0.236 Sum_probs=92.2
Q ss_pred cccccccCccceeeeCC--CCcc------------------cchhhc--ccccCceEeccccccccccchhhhcCCCCcE
Q 005407 311 SSKLFDRLTCLRSIDGP--PVRK------------------IPKGIK--KLIHLRYLALGWNPWIKELPEALCELCNLQT 368 (698)
Q Consensus 311 ~~~~~~~l~~L~~L~l~--~~~~------------------lp~~i~--~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 368 (698)
.+..+.++++|++|+++ .+.. +|+.++ ++++|++|++++|.....+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 34457788888888887 5666 888888 9999999999998866788988999999999
Q ss_pred eeccCCCCCc--ccchhhhcc------ccCCceecCCccCCCcCCc--CCCCCCCCCccCceeccCC
Q 005407 369 LDVSGCDNLK--RLPERIGEL------INLRHLMNSRQDDSSYMPR--GMERLTSLRTLGSFVASRG 425 (698)
Q Consensus 369 L~l~~~~~l~--~lp~~i~~l------~~L~~L~l~~~~~~~~~p~--~i~~L~~L~~L~~~~~~~~ 425 (698)
|++++|..+. .+|..++.+ ++|++|++++| .+..+|. .++++++|+.|++..+...
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCc
Confidence 9999887344 588888887 89999999888 4458888 8889999998887665543
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=3.1e-23 Score=237.69 Aligned_cols=258 Identities=20% Similarity=0.173 Sum_probs=140.6
Q ss_pred CCCcceEEEecCccchhhhccccccccc-CccceeeeCCC--Cc-ccchhhcccccCceEecccccccc-ccchh-hhcC
Q 005407 290 NETKLRSLAVPRRLYYKRTIASSKLFDR-LTCLRSIDGPP--VR-KIPKGIKKLIHLRYLALGWNPWIK-ELPEA-LCEL 363 (698)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~--~~-~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~-~~~l 363 (698)
.+++|+.|++.++......+ ..+.. ++.|+.|+++. +. .+|..++.+++|++|++++|. +. .+|.. ++++
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip---~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~l 342 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIP---DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKM 342 (768)
T ss_dssp CCTTCCEEECCSSEEEESCC---CCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE-EEEECCHHHHTTC
T ss_pred ccCCCCEEECcCCccCCccC---HHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc-ccCcCCHHHHhcC
Confidence 44555555555554322111 11222 24455555541 11 344445555555555555554 32 44443 4555
Q ss_pred CCCcEeeccCCCCCcccchhhhcc---------------------------ccCCceecCCccCCCcCCcCCCCCCCCCc
Q 005407 364 CNLQTLDVSGCDNLKRLPERIGEL---------------------------INLRHLMNSRQDDSSYMPRGMERLTSLRT 416 (698)
Q Consensus 364 ~~L~~L~l~~~~~l~~lp~~i~~l---------------------------~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 416 (698)
++|++|++++|.....+|..++.+ ++|+.|++++|.....+|..++++++|+.
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 422 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCE
T ss_pred CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCE
Confidence 555555555544222444444444 44555555444333345555555555555
Q ss_pred cCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhc
Q 005407 417 LGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLE 496 (698)
Q Consensus 417 L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 496 (698)
|++..+..... ....+..+..|+ .+.+.... ........+..+++|+.|+++.+.... .++.
T Consensus 423 L~Ls~N~l~~~-----~p~~l~~l~~L~-~L~L~~n~-------l~~~~p~~~~~l~~L~~L~L~~N~l~~-----~~p~ 484 (768)
T 3rgz_A 423 LHLSFNYLSGT-----IPSSLGSLSKLR-DLKLWLNM-------LEGEIPQELMYVKTLETLILDFNDLTG-----EIPS 484 (768)
T ss_dssp EECCSSEEESC-----CCGGGGGCTTCC-EEECCSSC-------CCSCCCGGGGGCTTCCEEECCSSCCCS-----CCCG
T ss_pred EECcCCcccCc-----ccHHHhcCCCCC-EEECCCCc-------ccCcCCHHHcCCCCceEEEecCCcccC-----cCCH
Confidence 55443332210 011122233333 33332221 111233446677888888888776432 2345
Q ss_pred cCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCcceeeeCccc
Q 005407 497 CLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMTSVKRLGNEF 571 (698)
Q Consensus 497 ~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~~l~~l~~~~ 571 (698)
.+..+++|+.|++.++...... |.+++.+++|+.|+|++|.....+| .++.+++|+.|++++|.-...+|...
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTGEI--PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred HHhcCCCCCEEEccCCccCCcC--ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 5677888999999888776332 8889999999999999998776666 67889999999999887444666544
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1.9e-22 Score=209.10 Aligned_cols=301 Identities=16% Similarity=0.167 Sum_probs=182.5
Q ss_pred CCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCc
Q 005407 290 NETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQ 367 (698)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~ 367 (698)
.+++++.|.+.++..... ..+..+++|++|+++ .+..+|. +..+++|++|++++|. +..+|. +.++++|+
T Consensus 42 ~l~~L~~L~l~~~~i~~~-----~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI-----QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDISA-LQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCS
T ss_pred hcccccEEEEeCCccccc-----hhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCchH-HcCCCcCC
Confidence 345555565555533221 114455556666655 4445544 5666666666666665 555553 66666666
Q ss_pred EeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccCce
Q 005407 368 TLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSL 447 (698)
Q Consensus 368 ~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l 447 (698)
+|++++|. +..+|. +..+++|++|++++|.....++ .++.+++|+.|++..+..... ..+..+..|+ .+
T Consensus 114 ~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-------~~~~~l~~L~-~L 182 (347)
T 4fmz_A 114 ELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV-------TPIANLTDLY-SL 182 (347)
T ss_dssp EEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC-------GGGGGCTTCS-EE
T ss_pred EEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc-------hhhccCCCCC-EE
Confidence 66666655 555554 5666666666666664444333 255566666665544332221 1122333333 33
Q ss_pred eEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccc
Q 005407 448 TLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSL 527 (698)
Q Consensus 448 ~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l 527 (698)
.+.... +. ....+..+++|+.++++.+...... .+..+++|+.|++.++....+ +. +..+
T Consensus 183 ~l~~n~-l~--------~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~~L~~L~l~~n~l~~~---~~-~~~l 242 (347)
T 4fmz_A 183 SLNYNQ-IE--------DISPLASLTSLHYFTAYVNQITDIT-------PVANMTRLNSLKIGNNKITDL---SP-LANL 242 (347)
T ss_dssp ECTTSC-CC--------CCGGGGGCTTCCEEECCSSCCCCCG-------GGGGCTTCCEEECCSSCCCCC---GG-GTTC
T ss_pred EccCCc-cc--------ccccccCCCccceeecccCCCCCCc-------hhhcCCcCCEEEccCCccCCC---cc-hhcC
Confidence 333211 00 0111556677777777776543211 145678899999988877666 44 7788
Q ss_pred cCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCccccccccc
Q 005407 528 TKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLL 607 (698)
Q Consensus 528 ~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 607 (698)
++|+.|++++|.. ..++.+..+++|+.|++++|. ++.++. ...+++|+.|++++
T Consensus 243 ~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~-l~~~~~------------------------~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 243 SQLTWLEIGTNQI-SDINAVKDLTKLKMLNVGSNQ-ISDISV------------------------LNNLSQLNSLFLNN 296 (347)
T ss_dssp TTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSC-CCCCGG------------------------GGGCTTCSEEECCS
T ss_pred CCCCEEECCCCcc-CCChhHhcCCCcCEEEccCCc-cCCChh------------------------hcCCCCCCEEECcC
Confidence 9999999999854 445778889999999999874 555421 25688999999998
Q ss_pred ccccccCcccccCCCcCCCCccceeeeccCCCCCCCCccccCCCCcceEEEccCc
Q 005407 608 MTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 662 (698)
Q Consensus 608 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~C~ 662 (698)
+. +..... .....+++|++|++++|+ ++.+++ +..+++|+.|++++|+
T Consensus 297 n~-l~~~~~----~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 297 NQ-LGNEDM----EVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp SC-CCGGGH----HHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred Cc-CCCcCh----hHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 64 333322 134468999999999975 777776 6668999999999886
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=3.4e-22 Score=227.40 Aligned_cols=341 Identities=13% Similarity=0.145 Sum_probs=243.9
Q ss_pred CCcceEEEEEccCCCcc----------------cCCcccC--CCCcceEEEecCccchhhhcccccccccCccceeeeCC
Q 005407 266 CWKARHLMIMGEMSKEV----------------PFPSFVY--NETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP 327 (698)
Q Consensus 266 ~~~~~~l~~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 327 (698)
..+++.+.+.++..... ..|..+. ++++|+.|+++++..... .+..+.+++.|+.|+++
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~---iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ---LPDFLYDLPELQSLNIA 523 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS---CCGGGGGCSSCCEEECT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc---ChHHHhCCCCCCEEECc
Confidence 34678888888876431 1566666 899999999999865443 33568899999999998
Q ss_pred C---Cc--ccchhhcccc-------cCceEeccccccccccch--hhhcCCCCcEeeccCCCCCcccchhhhccccCCce
Q 005407 328 P---VR--KIPKGIKKLI-------HLRYLALGWNPWIKELPE--ALCELCNLQTLDVSGCDNLKRLPERIGELINLRHL 393 (698)
Q Consensus 328 ~---~~--~lp~~i~~l~-------~L~~L~L~~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L 393 (698)
. +. .+|.+++.+. +|++|+|++|. +..+|. .++++++|++|++++|. +..+| .++.+++|+.|
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDL 600 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEE
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEE
Confidence 3 44 5888888777 99999999999 889999 89999999999999988 66999 89999999999
Q ss_pred ecCCccCCCcCCcCCCCCCC-CCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccc--c
Q 005407 394 MNSRQDDSSYMPRGMERLTS-LRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDL--K 470 (698)
Q Consensus 394 ~l~~~~~~~~~p~~i~~L~~-L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l--~ 470 (698)
++++|. +..+|..++.+++ |+.|++..+.....+... ..+.. ..|+ .+.+....-... .......+ .
T Consensus 601 ~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~---~~~~~-~~L~-~L~Ls~N~l~g~----ip~l~~~l~~~ 670 (876)
T 4ecn_A 601 KLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF---NAKSV-YVMG-SVDFSYNKIGSE----GRNISCSMDDY 670 (876)
T ss_dssp ECCSSC-CSCCCTTSCEECTTCCEEECCSSCCCSCCSCC---CTTCS-SCEE-EEECCSSCTTTT----SSSCSSCTTTC
T ss_pred ECcCCc-cccchHHHhhccccCCEEECcCCCCCcCchhh---hcccc-CCCC-EEECcCCcCCCc----cccchhhhccc
Confidence 999984 5589999999999 999988776655332211 11111 1122 333322211000 00000111 2
Q ss_pred ccccccceeeeeccCCCcccHHHhhcc-CCCCCCCceEEEEeecCCCCCCCCchhcc--------ccCccEEEEcCCCCC
Q 005407 471 SKMRLVELNLWFDRTTETKGHRVVLEC-LQPPRSLEKLEILAYEGDTIPPTSNWMLS--------LTKLRVLTLRHCFLC 541 (698)
Q Consensus 471 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~p~~~~~--------l~~L~~L~L~~c~~~ 541 (698)
..++|+.|+++.+.... ++.. +..+++|+.|++.++....+ |.++.. +++|+.|+|++|...
T Consensus 671 ~~~~L~~L~Ls~N~L~~------lp~~~~~~l~~L~~L~Ls~N~L~~i---p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 671 KGINASTVTLSYNEIQK------FPTELFATGSPISTIILSNNLMTSI---PENSLKPKDGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp CCCCEEEEECCSSCCCS------CCHHHHHTTCCCSEEECCSCCCSCC---CTTSSSCTTSCCTTGGGCCEEECCSSCCC
T ss_pred cCCCcCEEEccCCcCCc------cCHHHHccCCCCCEEECCCCcCCcc---ChHHhccccccccccCCccEEECCCCCCc
Confidence 34578999998887542 2222 23567899999998877766 555432 349999999999665
Q ss_pred CcCC-CCC--CCCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCccccccccccc------ccc
Q 005407 542 ECLP-CLG--KLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMT------NWE 612 (698)
Q Consensus 542 ~~l~-~l~--~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~ 612 (698)
.+| .+. .+++|+.|+|++|. +..+|.. ...+++|+.|++++++ -..
T Consensus 742 -~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~-----------------------l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 742 -SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQ-----------------------PLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp -CCCGGGSTTTCTTCCEEECCSSC-CSSCCCG-----------------------GGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred -cchHHhhhccCCCcCEEEeCCCC-CCccchh-----------------------hhcCCCCCEEECCCCCCcccccccc
Confidence 455 555 89999999999875 5555543 2578999999997633 233
Q ss_pred cCcccccCCCcCCCCccceeeeccCCCCCCCCccccCCCCcceEEEccCccc
Q 005407 613 EWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSRHL 664 (698)
Q Consensus 613 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~C~~l 664 (698)
.+|. .+..+++|+.|++++| .+..+|..+. ++|+.|++++|+..
T Consensus 797 ~ip~-----~l~~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 797 QWPT-----GITTCPSLIQLQIGSN-DIRKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp CCCT-----TGGGCSSCCEEECCSS-CCCBCCSCCC--SSSCEEECCSCTTC
T ss_pred cChH-----HHhcCCCCCEEECCCC-CCCccCHhhc--CCCCEEECCCCCCC
Confidence 4443 5567999999999997 5699998764 69999999999843
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=1.2e-22 Score=227.32 Aligned_cols=339 Identities=15% Similarity=0.175 Sum_probs=246.7
Q ss_pred CCcceEEEEEccCCCcc----------------cCCcccC--CCCcceEEEecCccchhhhcccccccccCccceeeeCC
Q 005407 266 CWKARHLMIMGEMSKEV----------------PFPSFVY--NETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP 327 (698)
Q Consensus 266 ~~~~~~l~~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 327 (698)
..+++.+.+.++..... ..|..+. ++++|++|+++++..... .+..+.+++.|++|+++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK---LPTFLKALPEMQLINVA 281 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS---CCTTTTTCSSCCEEECT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc---ChHHHhcCCCCCEEECc
Confidence 35678888888776320 0677777 899999999999865443 34568899999999999
Q ss_pred C---Cc--ccchhhccc------ccCceEeccccccccccch--hhhcCCCCcEeeccCCCCCcccchhhhccccCCcee
Q 005407 328 P---VR--KIPKGIKKL------IHLRYLALGWNPWIKELPE--ALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLM 394 (698)
Q Consensus 328 ~---~~--~lp~~i~~l------~~L~~L~L~~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~ 394 (698)
. +. .+|..++.+ ++|++|++++|. +..+|. .++++++|++|++++|.....+| .++.+++|+.|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 3 54 589988887 999999999999 889999 89999999999999988333999 899999999999
Q ss_pred cCCccCCCcCCcCCCCCCC-CCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhccccc---
Q 005407 395 NSRQDDSSYMPRGMERLTS-LRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLK--- 470 (698)
Q Consensus 395 l~~~~~~~~~p~~i~~L~~-L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~--- 470 (698)
+++| .+..+|..++.+++ |++|++..+.....+... ....+++|. .+.+....- .......+.
T Consensus 360 L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~-~~~~l~~L~----~L~Ls~N~l-------~~~~p~~l~~~~ 426 (636)
T 4eco_A 360 LAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIF-DAKSVSVMS----AIDFSYNEI-------GSVDGKNFDPLD 426 (636)
T ss_dssp CCSS-EEEECCTTSEEECTTCCEEECCSSCCSSCCSCC-CTTCSSCEE----EEECCSSCT-------TTTTTCSSCTTC
T ss_pred CCCC-ccccccHhhhhhcccCcEEEccCCcCcccchhh-hhcccCccC----EEECcCCcC-------CCcchhhhcccc
Confidence 9998 45589999999999 999988776655433221 111111232 333332211 111112222
Q ss_pred ----ccccccceeeeeccCCCcccHHHhhc-cCCCCCCCceEEEEeecCCCCCCCCchhcc--------ccCccEEEEcC
Q 005407 471 ----SKMRLVELNLWFDRTTETKGHRVVLE-CLQPPRSLEKLEILAYEGDTIPPTSNWMLS--------LTKLRVLTLRH 537 (698)
Q Consensus 471 ----~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~--------l~~L~~L~L~~ 537 (698)
.+.+|+.|+++.+.... ++. .+..+++|+.|++.++....+ |..+.. +++|+.|+|++
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~------lp~~~~~~l~~L~~L~Ls~N~l~~i---~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISK------FPKELFSTGSPLSSINLMGNMLTEI---PKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCS------CCTHHHHTTCCCSEEECCSSCCSBC---CSSSSEETTEECTTGGGCCEEECCS
T ss_pred cccccCCCCCEEECcCCccCc------CCHHHHccCCCCCEEECCCCCCCCc---CHHHhccccccccccCCccEEECcC
Confidence 56689999998887542 111 223467899999998887766 544332 23999999999
Q ss_pred CCCCCcCC-CCC--CCCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCcccccccccc------
Q 005407 538 CFLCECLP-CLG--KLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLM------ 608 (698)
Q Consensus 538 c~~~~~l~-~l~--~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------ 608 (698)
|... .+| .+. .+++|+.|+|++|. ++.+|.. ...+++|+.|+++++
T Consensus 498 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~-----------------------~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 498 NKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKFPTQ-----------------------PLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp SCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSCCCG-----------------------GGGCSSCCEEECCSCBCTTCC
T ss_pred CcCC-ccChhhhhccCCCcCEEECCCCC-CCCcChh-----------------------hhcCCCCCEEECCCCcccccC
Confidence 9766 555 555 89999999999875 5556543 246899999999653
Q ss_pred cccccCcccccCCCcCCCCccceeeeccCCCCCCCCccccCCCCcceEEEccCccc
Q 005407 609 TNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSRHL 664 (698)
Q Consensus 609 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~C~~l 664 (698)
.-...+|. .+..+++|++|++++| .+..+|..+. ++|+.|++++|+-.
T Consensus 553 ~l~~~~p~-----~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 553 RTLREWPE-----GITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp BCCCCCCT-----TGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSCTTC
T ss_pred cccccChH-----HHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcCCCCc
Confidence 22344443 5567999999999997 5799998765 89999999999743
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=1.2e-22 Score=231.03 Aligned_cols=296 Identities=16% Similarity=0.178 Sum_probs=159.8
Q ss_pred cccccCccceeeeCC--CCcc------------------cchhhc--ccccCceEeccccccccccchhhhcCCCCcEee
Q 005407 313 KLFDRLTCLRSIDGP--PVRK------------------IPKGIK--KLIHLRYLALGWNPWIKELPEALCELCNLQTLD 370 (698)
Q Consensus 313 ~~~~~l~~L~~L~l~--~~~~------------------lp~~i~--~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 370 (698)
..+.++++|++|+++ .+.. +|+.++ ++++|++|+|++|.....+|..++++++|++|+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 446667777777776 4554 777766 777777777777765667777777777777777
Q ss_pred ccCCCCCc--ccchhhhccc-------cCCceecCCccCCCcCCc--CCCCCCCCCccCceeccCCCCcccccccccccc
Q 005407 371 VSGCDNLK--RLPERIGELI-------NLRHLMNSRQDDSSYMPR--GMERLTSLRTLGSFVASRGKSSKACSRLKSLNK 439 (698)
Q Consensus 371 l~~~~~l~--~lp~~i~~l~-------~L~~L~l~~~~~~~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~ 439 (698)
+++|..+. .+|..++.+. +|++|++++|. +..+|. .++++++|+.|++..+.....+ .+..
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-------~~~~ 593 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE-------AFGT 593 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-------CCCT
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccch-------hhcC
Confidence 77775343 4777676665 77777777773 447776 6777777777766554433211 2222
Q ss_pred cccccCceeEccccCcCCCCCcchhhccccccccc-ccceeeeeccCCCcccHHHhhccCCCC-----------------
Q 005407 440 LKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMR-LVELNLWFDRTTETKGHRVVLECLQPP----------------- 501 (698)
Q Consensus 440 L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~----------------- 501 (698)
+..|+ .|.+....- . .....+..+++ |+.|+++.+... .++..+...
T Consensus 594 L~~L~-~L~Ls~N~l-------~-~lp~~l~~l~~~L~~L~Ls~N~L~------~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 594 NVKLT-DLKLDYNQI-------E-EIPEDFCAFTDQVEGLGFSHNKLK------YIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp TSEES-EEECCSSCC-------S-CCCTTSCEECTTCCEEECCSSCCC------SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CCcce-EEECcCCcc-------c-cchHHHhhccccCCEEECcCCCCC------cCchhhhccccCCCCEEECcCCcCCC
Confidence 22222 333322110 0 11223444555 555555555432 111222211
Q ss_pred --------------CCCceEEEEeecCCCCCCCCchhc-cccCccEEEEcCCCCCCcCC-CCC--------CCCCcceee
Q 005407 502 --------------RSLEKLEILAYEGDTIPPTSNWML-SLTKLRVLTLRHCFLCECLP-CLG--------KLPCLETLT 557 (698)
Q Consensus 502 --------------~~L~~L~l~~~~~~~~~~~p~~~~-~l~~L~~L~L~~c~~~~~l~-~l~--------~L~~L~~L~ 557 (698)
++|+.|++.++....+ |.++. .+++|+.|+|++|... .+| .+. ++++|+.|+
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l---p~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYNEIQKF---PTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSSCCCSC---CHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred ccccchhhhccccCCCcCEEEccCCcCCcc---CHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEE
Confidence 2344444444433333 33332 3444555555444332 222 111 122455555
Q ss_pred ccCCcceeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeecc-
Q 005407 558 LEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICW- 636 (698)
Q Consensus 558 L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~- 636 (698)
|++|. ++.+|..+. ...+++|+.|+|+++ .+..+|. ....+++|+.|++++
T Consensus 735 Ls~N~-L~~lp~~l~---------------------~~~l~~L~~L~Ls~N-~L~~lp~-----~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 735 LRFNK-LTSLSDDFR---------------------ATTLPYLSNMDVSYN-CFSSFPT-----QPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp CCSSC-CCCCCGGGS---------------------TTTCTTCCEEECCSS-CCSSCCC-----GGGGCTTCCEEECCCC
T ss_pred CCCCC-CccchHHhh---------------------hccCCCcCEEEeCCC-CCCccch-----hhhcCCCCCEEECCCC
Confidence 54442 333332210 025677777777774 4555554 344677777777765
Q ss_pred -----CCCCCCCCccccCCCCcceEEEccCcc
Q 005407 637 -----SPELKALPDYILGSTSLDKLLIYYSRH 663 (698)
Q Consensus 637 -----c~~L~~lp~~~~~l~~L~~L~i~~C~~ 663 (698)
|.-...+|..+.++++|+.|++++|.-
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 333445676777777888888877753
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=1.3e-21 Score=206.34 Aligned_cols=302 Identities=17% Similarity=0.144 Sum_probs=222.4
Q ss_pred CCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccch-hhcccccCceEeccccccccccch-hhhcCCC
Q 005407 290 NETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPK-GIKKLIHLRYLALGWNPWIKELPE-ALCELCN 365 (698)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~ 365 (698)
.+++++.|.+.++..... ....|.++++|++|+++ .+..++. .+..+++|++|++++|. +..+|+ .++++++
T Consensus 43 ~l~~l~~l~l~~~~l~~l---~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKL---PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPL 118 (390)
T ss_dssp GGCCCSEEEEESCEESEE---CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred ccCCceEEEecCCchhhC---ChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCC
Confidence 467889999888764332 23446778889999988 5666664 68899999999999998 777754 4789999
Q ss_pred CcEeeccCCCCCcccchhh-hccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCccccccccccccccccc
Q 005407 366 LQTLDVSGCDNLKRLPERI-GELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLE 444 (698)
Q Consensus 366 L~~L~l~~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ 444 (698)
|++|++++|. +..+|..+ +.+++|++|++++|......|..++.+++|++|++..+..... .+..++.|.
T Consensus 119 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~l~~L~--- 189 (390)
T 3o6n_A 119 LTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-----DLSLIPSLF--- 189 (390)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-----CGGGCTTCS---
T ss_pred CCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-----ccccccccc---
Confidence 9999999987 77888774 8899999999998854444456688899999998776554431 122333333
Q ss_pred CceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchh
Q 005407 445 GSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWM 524 (698)
Q Consensus 445 ~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~ 524 (698)
.+.+... ....+....+|+.|+++.+..... . ...+++|+.|++.++..... .++
T Consensus 190 -~L~l~~n------------~l~~~~~~~~L~~L~l~~n~l~~~------~--~~~~~~L~~L~l~~n~l~~~----~~l 244 (390)
T 3o6n_A 190 -HANVSYN------------LLSTLAIPIAVEELDASHNSINVV------R--GPVNVELTILKLQHNNLTDT----AWL 244 (390)
T ss_dssp -EEECCSS------------CCSEEECCSSCSEEECCSSCCCEE------E--CCCCSSCCEEECCSSCCCCC----GGG
T ss_pred -eeecccc------------cccccCCCCcceEEECCCCeeeec------c--ccccccccEEECCCCCCccc----HHH
Confidence 3333211 011223345788888887764321 1 13357899999998877654 578
Q ss_pred ccccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCccccc
Q 005407 525 LSLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETL 603 (698)
Q Consensus 525 ~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 603 (698)
..+++|+.|++++|......+ .++.+++|+.|+++++. ++.++.. ...+++|+.|
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-----------------------~~~l~~L~~L 300 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY-----------------------GQPIPTLKVL 300 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS-----------------------SSCCTTCCEE
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc-----------------------cCCCCCCCEE
Confidence 899999999999997666544 68889999999999865 6666442 2468999999
Q ss_pred ccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCccccCCCCcceEEEccCc
Q 005407 604 IFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 662 (698)
Q Consensus 604 ~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~C~ 662 (698)
+++++ .+..++. ....+++|++|++++| .++.+| +..+++|+.|+++++|
T Consensus 301 ~L~~n-~l~~~~~-----~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 301 DLSHN-HLLHVER-----NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp ECCSS-CCCCCGG-----GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred ECCCC-cceecCc-----cccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence 99996 6777765 3457899999999997 588887 5568999999999987
No 11
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.87 E-value=3.9e-22 Score=222.10 Aligned_cols=209 Identities=23% Similarity=0.274 Sum_probs=160.1
Q ss_pred hhhhcCC--ceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchHHHHHhCCCCccceec---cCCChHhHHHH
Q 005407 3 LHESIEG--KKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKVAIAIGTTKSNIIPI---ELLSDEDCWSI 77 (698)
Q Consensus 3 l~~~L~~--kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~v---~~L~~~~a~~L 77 (698)
+++.+.+ +++||||||||+. ..++ +.++||+||||||++.++..+... .+++ ++|+.+||++|
T Consensus 227 l~~~l~~~~~~~LLVLDdv~~~--~~l~-------~l~~~~~ilvTsR~~~~~~~~~~~---~~~v~~l~~L~~~ea~~L 294 (591)
T 1z6t_A 227 LRILMLRKHPRSLLILDDVWDS--WVLK-------AFDSQCQILLTTRDKSVTDSVMGP---KYVVPVESSLGKEKGLEI 294 (591)
T ss_dssp HHHHHHHTCTTCEEEEEEECCH--HHHH-------TTCSSCEEEEEESCGGGGTTCCSC---EEEEECCSSCCHHHHHHH
T ss_pred HHHHHccCCCCeEEEEeCCCCH--HHHH-------HhcCCCeEEEECCCcHHHHhcCCC---ceEeecCCCCCHHHHHHH
Confidence 3444544 7899999999862 2222 236789999999999987655422 4555 48999999999
Q ss_pred HHHHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcccCCHHHHHHHHhhhhccc----c----cccccchh
Q 005407 78 FSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLRFKRKIEEWQRVLESELWEL----E----EVDKGLLG 149 (698)
Q Consensus 78 f~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~----~----~~~~~i~~ 149 (698)
|...++... ....+.+.+|+++|+|+||||+.+|+.++.+. ..|..+++...... . .....+..
T Consensus 295 ~~~~~~~~~------~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 366 (591)
T 1z6t_A 295 LSLFVNMKK------ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDE 366 (591)
T ss_dssp HHHHHTSCG------GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHH
T ss_pred HHHHhCCCc------ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHH
Confidence 999986421 22345789999999999999999999997653 46887776432211 1 11246888
Q ss_pred hHhhhccCCChhHHHHHhhhcCCCCCCccCHHHHHHHHHhcCccccCCCccHHHHHHHHHHHHHhCCCcccccccCCCCe
Q 005407 150 PLLLSYRDLPPPLKKCFLYCAIFPKDSMLEKDKLIRLWMAQDYLKVKGREDMEVVGEEYFESLAMHSLFQDFERSEHDGR 229 (698)
Q Consensus 150 ~l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~Li~~wi~eg~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~ 229 (698)
++..||+.|+++.|.||+++|+||+|+.++.+.+...|.++ ...+..++..|++++|++.... +..
T Consensus 367 ~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L~~~~Ll~~~~~---~~~ 432 (591)
T 1z6t_A 367 AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQEFVNKSLLFCDRN---GKS 432 (591)
T ss_dssp HHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSSEEEEE---TTE
T ss_pred HHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHHHHHHhCcCeEEecC---CCc
Confidence 99999999999999999999999999999999999999754 2346788999999999984322 222
Q ss_pred eEEEEEechhHHHHHHHh
Q 005407 230 KIIRCKMHDIVHDFSQFL 247 (698)
Q Consensus 230 ~~~~~~~hdlv~~~~~~~ 247 (698)
. +++||+++++++...
T Consensus 433 ~--~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 433 F--RYYLHDLQVDFLTEK 448 (591)
T ss_dssp E--EEECCHHHHHHHHHH
T ss_pred c--EEEEcHHHHHHHHhh
Confidence 2 789999999999876
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=4e-21 Score=215.12 Aligned_cols=277 Identities=19% Similarity=0.124 Sum_probs=165.0
Q ss_pred CCcceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCccc-chhhcccccC
Q 005407 266 CWKARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKI-PKGIKKLIHL 342 (698)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~l-p~~i~~l~~L 342 (698)
...++.+.+.++..... .+..+.++++|++|+++++..... .+..|.++++|++|+++ .+..+ |..++++.+|
T Consensus 31 ~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i---~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETI---EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEE---CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCccccc---CHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 35677888777765322 344677888999999988864432 23457888889999887 56666 6778899999
Q ss_pred ceEeccccccccccc-hhhhcCCCCcEeeccCCCCCc-ccchhhhccccCCceecCCccCCCcCCcCCCCCCCCC----c
Q 005407 343 RYLALGWNPWIKELP-EALCELCNLQTLDVSGCDNLK-RLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLR----T 416 (698)
Q Consensus 343 ~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~----~ 416 (698)
++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+++|+ +
T Consensus 107 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 107 ENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp CEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred CEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence 999999888 77766 568889999999999887332 5788889999999999988854444455566555554 3
Q ss_pred cCceeccCCCCcccccccccc-------------------cccccccCceeE--ccccCcCCC-----------------
Q 005407 417 LGSFVASRGKSSKACSRLKSL-------------------NKLKHLEGSLTL--RRLGNERDL----------------- 458 (698)
Q Consensus 417 L~~~~~~~~~~~~~~~~l~~l-------------------~~L~~L~~~l~i--~~l~~~~~~----------------- 458 (698)
|++..+.....+........+ .++..++ .+.+ ........+
T Consensus 186 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~-~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 264 (606)
T 3vq2_A 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH-VHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264 (606)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCE-EEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred eeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccc-cccccccccccCCcccccChHHhhhhhhccHh
Confidence 333322222111110000000 0111110 0000 000000000
Q ss_pred -------CCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCcc
Q 005407 459 -------GDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLR 531 (698)
Q Consensus 459 -------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~ 531 (698)
....... ..+..+++|+.|++..+.... + ..+..+++|+.|++.++....+ |.+ .+++|+
T Consensus 265 ~l~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~------l-~~l~~~~~L~~L~l~~n~l~~l---p~~--~l~~L~ 331 (606)
T 3vq2_A 265 EFRLTYTNDFSDDI-VKFHCLANVSAMSLAGVSIKY------L-EDVPKHFKWQSLSIIRCQLKQF---PTL--DLPFLK 331 (606)
T ss_dssp EEEECCCTTCCGGG-GSCGGGTTCSEEEEESCCCCC------C-CCCCTTCCCSEEEEESCCCSSC---CCC--CCSSCC
T ss_pred heeccccccccccc-cccccCCCCCEEEecCccchh------h-hhccccccCCEEEcccccCccc---ccC--CCCccc
Confidence 0001111 125566777777777665322 1 1556667788888877776555 543 677777
Q ss_pred EEEEcCCCCCCcCCCCCCCCCcceeeccCCc
Q 005407 532 VLTLRHCFLCECLPCLGKLPCLETLTLEGMT 562 (698)
Q Consensus 532 ~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~ 562 (698)
.|++++|...... .++.+++|++|++++|.
T Consensus 332 ~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~ 361 (606)
T 3vq2_A 332 SLTLTMNKGSISF-KKVALPSLSYLDLSRNA 361 (606)
T ss_dssp EEEEESCSSCEEC-CCCCCTTCCEEECCSSC
T ss_pred eeeccCCcCccch-hhccCCCCCEEECcCCc
Confidence 7777777544433 45566667777766653
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.9e-21 Score=199.12 Aligned_cols=227 Identities=21% Similarity=0.243 Sum_probs=156.1
Q ss_pred cceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCC
Q 005407 320 CLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSR 397 (698)
Q Consensus 320 ~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~ 397 (698)
.++.|++. .+..+|..++.+.+|++|+|++|. +..+|..++++++|++|++++|. +..+|..++++++|++|++++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCC
Confidence 34444444 455667777777777777777777 66777777777777777777775 557777777777777777777
Q ss_pred ccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccc
Q 005407 398 QDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVE 477 (698)
Q Consensus 398 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~ 477 (698)
|.....+|..++... +
T Consensus 160 n~~~~~~p~~~~~~~------------------------------~---------------------------------- 175 (328)
T 4fcg_A 160 CPELTELPEPLASTD------------------------------A---------------------------------- 175 (328)
T ss_dssp ETTCCCCCSCSEEEC-----------------------------------------------------------------
T ss_pred CCCccccChhHhhcc------------------------------c----------------------------------
Confidence 655555554322100 0
Q ss_pred eeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcceee
Q 005407 478 LNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLT 557 (698)
Q Consensus 478 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~ 557 (698)
...+..+++|+.|++.++....+ |.+++.+++|++|+|++|......+.++.+++|++|+
T Consensus 176 -----------------~~~~~~l~~L~~L~L~~n~l~~l---p~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 176 -----------------SGEHQGLVNLQSLRLEWTGIRSL---PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235 (328)
T ss_dssp -----------------CCCEEESTTCCEEEEEEECCCCC---CGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred -----------------hhhhccCCCCCEEECcCCCcCcc---hHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence 00012234566666666655544 6777777788888888776554444677777888888
Q ss_pred ccCCcceeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccC
Q 005407 558 LEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWS 637 (698)
Q Consensus 558 L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 637 (698)
+++|.....++.. ...+++|++|++++|+.+..++. .+..+++|++|++++|
T Consensus 236 Ls~n~~~~~~p~~-----------------------~~~l~~L~~L~L~~n~~~~~~p~-----~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 236 LRGCTALRNYPPI-----------------------FGGRAPLKRLILKDCSNLLTLPL-----DIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CTTCTTCCBCCCC-----------------------TTCCCCCCEEECTTCTTCCBCCT-----TGGGCTTCCEEECTTC
T ss_pred CcCCcchhhhHHH-----------------------hcCCCCCCEEECCCCCchhhcch-----hhhcCCCCCEEeCCCC
Confidence 8877765555442 24677888888888777777765 4557899999999999
Q ss_pred CCCCCCCccccCCCCcceEEEcc
Q 005407 638 PELKALPDYILGSTSLDKLLIYY 660 (698)
Q Consensus 638 ~~L~~lp~~~~~l~~L~~L~i~~ 660 (698)
+.+..+|..+.++++|+.+++..
T Consensus 288 ~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 288 VNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TTCCCCCGGGGGSCTTCEEECCG
T ss_pred CchhhccHHHhhccCceEEeCCH
Confidence 99999999999999999988764
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=5.8e-21 Score=213.80 Aligned_cols=346 Identities=19% Similarity=0.141 Sum_probs=213.0
Q ss_pred CcceEEEecCccchhhhcccccccccCccceeeeCC--CCccc-chhhcccccCceEecccccccccc-chhhhcCCCCc
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKI-PKGIKKLIHLRYLALGWNPWIKEL-PEALCELCNLQ 367 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~l-p~~i~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~ 367 (698)
++++.|+++++..... .+..|.++++|++|+++ .+..+ |..++++++|++|+|++|. +..+ |..++++++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKIL---KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLE 107 (606)
T ss_dssp TTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCC
T ss_pred CCcCEEECCCCCcCEe---ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCC
Confidence 7899999999875433 23458899999999998 56666 5568999999999999999 7777 78899999999
Q ss_pred EeeccCCCCCcccc-hhhhccccCCceecCCccCCC-cCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccC
Q 005407 368 TLDVSGCDNLKRLP-ERIGELINLRHLMNSRQDDSS-YMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEG 445 (698)
Q Consensus 368 ~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~ 445 (698)
+|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|++..+........ .+..+.+++....
T Consensus 108 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 108 NLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN--DLQFLRENPQVNL 184 (606)
T ss_dssp EEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT--TTHHHHHCTTCCC
T ss_pred EEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh--hhhhhhccccccc
Confidence 99999998 66555 679999999999999995443 5799999999999998876655432111 2333333332000
Q ss_pred ceeEccccCcCCCCCcchhhcccccccccccceeeeeccCC---------------------------------------
Q 005407 446 SLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTT--------------------------------------- 486 (698)
Q Consensus 446 ~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--------------------------------------- 486 (698)
.+.+.... +. . .........+|+.|+++.+...
T Consensus 185 ~L~l~~n~-l~------~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~ 256 (606)
T 3vq2_A 185 SLDMSLNP-ID------F-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256 (606)
T ss_dssp EEECTTCC-CC------E-ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGT
T ss_pred eeeccCCC-cc------e-eCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhh
Confidence 22222111 00 0 0001111113444444433211
Q ss_pred -------------Cc-ccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCC
Q 005407 487 -------------ET-KGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPC 552 (698)
Q Consensus 487 -------------~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~ 552 (698)
.. ......+. +..+++|+.|++.++....+ | ++..+++|+.|++++|.. ..+|.+ .+++
T Consensus 257 ~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l---~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~ 329 (606)
T 3vq2_A 257 GLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL---E-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPF 329 (606)
T ss_dssp TGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC---C-CCCTTCCCSEEEEESCCC-SSCCCC-CCSS
T ss_pred hhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhh---h-hccccccCCEEEcccccC-cccccC-CCCc
Confidence 00 00011122 56678999999998888776 6 778899999999999987 778877 8999
Q ss_pred cceeeccCCcceeeeCccccCCCccccccccccccccc---cccCcCCCcccccccccccccccCcc-------------
Q 005407 553 LETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASS---IIRDTAFPRLETLIFLLMTNWEEWDD------------- 616 (698)
Q Consensus 553 L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~l~~~~~------------- 616 (698)
|+.|++++|..+..++...+.. .............. ......+++|++|+++++. +..++.
T Consensus 330 L~~L~l~~n~~~~~~~~~~l~~--L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l 406 (606)
T 3vq2_A 330 LKSLTLTMNKGSISFKKVALPS--LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDF 406 (606)
T ss_dssp CCEEEEESCSSCEECCCCCCTT--CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEEC
T ss_pred cceeeccCCcCccchhhccCCC--CCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeEC
Confidence 9999999986555442211111 00000000000000 0111334455555544431 211111
Q ss_pred -------cccCCCcCCCCccceeeeccCCCCCCCCccccCCCCcceEEEccCc
Q 005407 617 -------CEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 662 (698)
Q Consensus 617 -------~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~C~ 662 (698)
.........+++|++|++++|.-....|..+..+++|+.|++++|.
T Consensus 407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 0000133456777777777764333355556667777777777774
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=5e-21 Score=206.42 Aligned_cols=353 Identities=14% Similarity=0.059 Sum_probs=196.2
Q ss_pred CcceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCccc-chhhcccccCc
Q 005407 267 WKARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKI-PKGIKKLIHLR 343 (698)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~l-p~~i~~l~~L~ 343 (698)
..++.+.+.++.... ..+..+.++++|++|+++++...... .+..|.++++|++|+++ .+..+ |..++.+.+|+
T Consensus 30 ~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~i--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 30 AHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVI--RNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp TTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCCCSTTCEE--CTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CccCEEEecCCccCc-CChhHhccCccccEEECcCCcccceE--CcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 455666665554422 12445556666666666665432111 12335666666666666 33333 45566666666
Q ss_pred eEeccccccccc-cchh--hhcCCCCcEeeccCCCCCcccchh-hhccccCCceecCCccCCCcCCcCCCCC--CCCCcc
Q 005407 344 YLALGWNPWIKE-LPEA--LCELCNLQTLDVSGCDNLKRLPER-IGELINLRHLMNSRQDDSSYMPRGMERL--TSLRTL 417 (698)
Q Consensus 344 ~L~L~~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~L--~~L~~L 417 (698)
+|++++|. +.. +|.. ++++++|++|++++|......|.. ++++++|++|++++|......|..++.+ .+|+.|
T Consensus 107 ~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 107 VLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp EEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred EEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 66666666 443 3333 566666666666666522222443 5666666666666664433444444433 333343
Q ss_pred CceeccCCCCcccccc---cccccccccccCceeEccccCcCCCCCcchhhcccc---cccccccceeeeeccCCCcccH
Q 005407 418 GSFVASRGKSSKACSR---LKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDL---KSKMRLVELNLWFDRTTETKGH 491 (698)
Q Consensus 418 ~~~~~~~~~~~~~~~~---l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~ 491 (698)
++..+........... ...+..+..|+ .+.+.... ........+ ....+|+.|.++.+........
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~-------l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 257 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSIT-TLDLSGNG-------FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEE-EEECTTSC-------CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred ccccCcccccchhhccccccccccccceee-eEecCCCc-------ccccchhhhhccccccceeeEeeccccccccccc
Confidence 3322222111000000 00011111122 22222110 001111111 1124555555544321110000
Q ss_pred HHh-----hccC--CCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCcc
Q 005407 492 RVV-----LECL--QPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMTS 563 (698)
Q Consensus 492 ~~~-----~~~~--~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~~ 563 (698)
... ...+ ...++|+.|++.++...... |.+++.+++|+.|+|++|......+ .++.+++|++|+|++|.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~- 334 (455)
T 3v47_A 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL--KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF- 334 (455)
T ss_dssp CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC--TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-
T ss_pred hhhhccCcccccccccccCceEEEecCccccccc--hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-
Confidence 000 0000 12368999999888776653 7788899999999999998766555 78899999999999875
Q ss_pred eeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCC
Q 005407 564 VKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKAL 643 (698)
Q Consensus 564 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 643 (698)
++.++...+ ..+++|+.|+++++ .+..+.. ..+..+++|++|++++| +++.+
T Consensus 335 l~~~~~~~~----------------------~~l~~L~~L~Ls~N-~l~~~~~----~~~~~l~~L~~L~L~~N-~l~~~ 386 (455)
T 3v47_A 335 LGSIDSRMF----------------------ENLDKLEVLDLSYN-HIRALGD----QSFLGLPNLKELALDTN-QLKSV 386 (455)
T ss_dssp CCEECGGGG----------------------TTCTTCCEEECCSS-CCCEECT----TTTTTCTTCCEEECCSS-CCSCC
T ss_pred cCCcChhHh----------------------cCcccCCEEECCCC-cccccCh----hhccccccccEEECCCC-ccccC
Confidence 666644332 56899999999996 4555432 24567999999999995 78888
Q ss_pred Ccc-ccCCCCcceEEEccCc
Q 005407 644 PDY-ILGSTSLDKLLIYYSR 662 (698)
Q Consensus 644 p~~-~~~l~~L~~L~i~~C~ 662 (698)
|.. +..+++|+.|+++++|
T Consensus 387 ~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 387 PDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSC
T ss_pred CHhHhccCCcccEEEccCCC
Confidence 875 4679999999999876
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=4.3e-21 Score=219.95 Aligned_cols=285 Identities=21% Similarity=0.188 Sum_probs=200.8
Q ss_pred CCcceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCc-ccchhhccc-cc
Q 005407 266 CWKARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVR-KIPKGIKKL-IH 341 (698)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~-~lp~~i~~l-~~ 341 (698)
...++.+.+.++... ...+..+..+++|++|+++++......+. ..++.|+.|++. .+. .+|..+..+ ++
T Consensus 222 l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-----~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~ 295 (768)
T 3rgz_A 222 CSALQHLDISGNKLS-GDFSRAISTCTELKLLNISSNQFVGPIPP-----LPLKSLQYLSLAENKFTGEIPDFLSGACDT 295 (768)
T ss_dssp CCSCCEEECCSSCCC-SCHHHHTTTCSSCCEEECCSSCCEESCCC-----CCCTTCCEEECCSSEEEESCCCCSCTTCTT
T ss_pred CCCCCEEECcCCcCC-CcccHHHhcCCCCCEEECCCCcccCccCc-----cccCCCCEEECcCCccCCccCHHHHhhcCc
Confidence 356788888777653 12456788899999999999875543331 278889999998 333 788888775 99
Q ss_pred CceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchh-hhccccCCceecCCccCCCcCCcCCCCCC-CCCccCc
Q 005407 342 LRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPER-IGELINLRHLMNSRQDDSSYMPRGMERLT-SLRTLGS 419 (698)
Q Consensus 342 L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~L~-~L~~L~~ 419 (698)
|++|++++|.....+|..++++++|++|++++|.....+|.. ++.+++|++|++++|.....+|..++++. +|+.|++
T Consensus 296 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L 375 (768)
T 3rgz_A 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375 (768)
T ss_dssp CSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEEC
T ss_pred CCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEc
Confidence 999999999944488999999999999999999854588877 89999999999999966667888887776 7887776
Q ss_pred eeccCCCC-cccccc--c------------------ccccccccccCceeEccccCcCCCCCcchhhcccccccccccce
Q 005407 420 FVASRGKS-SKACSR--L------------------KSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVEL 478 (698)
Q Consensus 420 ~~~~~~~~-~~~~~~--l------------------~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L 478 (698)
..+..... +..... + ..+..+..|+ .+.+.... ........+..+++|+.|
T Consensus 376 s~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~Ls~N~-------l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV-SLHLSFNY-------LSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp CSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCC-EEECCSSE-------EESCCCGGGGGCTTCCEE
T ss_pred cCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCC-EEECcCCc-------ccCcccHHHhcCCCCCEE
Confidence 54432110 000000 0 1112222222 22222111 111223446667788888
Q ss_pred eeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC-CCCCCCCcceee
Q 005407 479 NLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP-CLGKLPCLETLT 557 (698)
Q Consensus 479 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~ 557 (698)
+++.+.... .++..+..+++|+.|++.++...... |.++..+++|+.|+|++|.....+| .++.+++|++|+
T Consensus 448 ~L~~n~l~~-----~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 448 KLWLNMLEG-----EIPQELMYVKTLETLILDFNDLTGEI--PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520 (768)
T ss_dssp ECCSSCCCS-----CCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred ECCCCcccC-----cCCHHHcCCCCceEEEecCCcccCcC--CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence 887776432 23455667889999999888776432 8889999999999999998776666 688999999999
Q ss_pred ccCCcceeeeCccc
Q 005407 558 LEGMTSVKRLGNEF 571 (698)
Q Consensus 558 L~~c~~l~~l~~~~ 571 (698)
|++|.-...+|..+
T Consensus 521 L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 521 LSNNSFSGNIPAEL 534 (768)
T ss_dssp CCSSCCEEECCGGG
T ss_pred CCCCcccCcCCHHH
Confidence 99987555666544
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=3e-21 Score=214.80 Aligned_cols=302 Identities=17% Similarity=0.149 Sum_probs=224.7
Q ss_pred CCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccch-hhcccccCceEeccccccccccchh-hhcCCC
Q 005407 290 NETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPK-GIKKLIHLRYLALGWNPWIKELPEA-LCELCN 365 (698)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~ 365 (698)
.+++++.+.+.++..... ....|.+++.|++|+++ .+..+|. .++.+++|++|+|++|. +..+|+. ++++++
T Consensus 49 ~l~~l~~l~l~~~~l~~l---p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL---PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPL 124 (597)
T ss_dssp GGCCCSEEEESSCEESEE---CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred cCCCceEEEeeCCCCCCc---CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCC
Confidence 467889999888764332 23456788899999998 5666654 78999999999999998 7777654 689999
Q ss_pred CcEeeccCCCCCcccchhh-hccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCccccccccccccccccc
Q 005407 366 LQTLDVSGCDNLKRLPERI-GELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLE 444 (698)
Q Consensus 366 L~~L~l~~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ 444 (698)
|++|+|++|. +..+|..+ +.+++|++|++++|......|..++.+++|++|++..+..... .+..++.|.
T Consensus 125 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----~~~~l~~L~--- 195 (597)
T 3oja_B 125 LTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-----DLSLIPSLF--- 195 (597)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-----CGGGCTTCS---
T ss_pred CCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-----Chhhhhhhh---
Confidence 9999999987 77888774 8999999999999865555566789999999998776554432 122333333
Q ss_pred CceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchh
Q 005407 445 GSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWM 524 (698)
Q Consensus 445 ~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~ 524 (698)
.+.+... ....+....+|+.|+++.+..... .. ..+++|+.|++.++.... +.++
T Consensus 196 -~L~l~~n------------~l~~l~~~~~L~~L~ls~n~l~~~------~~--~~~~~L~~L~L~~n~l~~----~~~l 250 (597)
T 3oja_B 196 -HANVSYN------------LLSTLAIPIAVEELDASHNSINVV------RG--PVNVELTILKLQHNNLTD----TAWL 250 (597)
T ss_dssp -EEECCSS------------CCSEEECCTTCSEEECCSSCCCEE------EC--SCCSCCCEEECCSSCCCC----CGGG
T ss_pred -hhhcccC------------ccccccCCchhheeeccCCccccc------cc--ccCCCCCEEECCCCCCCC----Chhh
Confidence 3332211 111233456788899887764321 11 224689999998887654 4678
Q ss_pred ccccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCccccc
Q 005407 525 LSLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETL 603 (698)
Q Consensus 525 ~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 603 (698)
..+++|+.|+|++|......| .++.+++|+.|+|++|. +..++.. ...+|+|+.|
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~-----------------------~~~l~~L~~L 306 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY-----------------------GQPIPTLKVL 306 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECS-----------------------SSCCTTCCEE
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc-----------------------cccCCCCcEE
Confidence 899999999999998766555 68899999999999865 6666542 2468999999
Q ss_pred ccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCccccCCCCcceEEEccCc
Q 005407 604 IFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 662 (698)
Q Consensus 604 ~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~C~ 662 (698)
+++++ .+..++. ....+++|+.|++++| .+..+| +..+++|+.|+++++|
T Consensus 307 ~Ls~N-~l~~i~~-----~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 307 DLSHN-HLLHVER-----NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp ECCSS-CCCCCGG-----GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred ECCCC-CCCccCc-----ccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 99995 5667765 4457899999999997 588887 4558999999999987
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=8.7e-21 Score=204.73 Aligned_cols=325 Identities=21% Similarity=0.187 Sum_probs=169.0
Q ss_pred cceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCceE
Q 005407 268 KARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYL 345 (698)
Q Consensus 268 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L 345 (698)
.++.+.+.+..... . +.+..+++|++|+++++...... . +.++++|++|+++ .+..++. ++.+++|++|
T Consensus 47 ~l~~L~l~~~~i~~--l-~~~~~l~~L~~L~Ls~n~l~~~~----~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 47 QVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDIT----P-LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp TCCEEECCSSCCCC--C-TTGGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred cccEEecCCCCCcc--C-cchhhhcCCCEEECCCCccCCch----h-hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 34555555444321 1 23455677777777776543322 1 5666777777766 4555555 6677777777
Q ss_pred eccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCC
Q 005407 346 ALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRG 425 (698)
Q Consensus 346 ~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~ 425 (698)
++++|. +..+|. +.++++|++|++++|. +..+|. ++.+++|++|++++ ....++ .++++++|+.|++..+...
T Consensus 118 ~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~--~~~~~~-~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGN--QVTDLK-PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEE--SCCCCG-GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCC--cccCch-hhccCCCCCEEECcCCcCC
Confidence 777776 666665 6777777777777765 555543 66666666666642 222222 2555666666655443322
Q ss_pred CCcccccccccccccccccCceeEccccCcCCCC--------------CcchhhcccccccccccceeeeeccCCCcccH
Q 005407 426 KSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLG--------------DDNDDEKVDLKSKMRLVELNLWFDRTTETKGH 491 (698)
Q Consensus 426 ~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~--------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 491 (698)
.. ..+..+..|+ .+.+..... .... .........+..+++|+.|+++.+.....
T Consensus 191 ~~-------~~l~~l~~L~-~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--- 258 (466)
T 1o6v_A 191 DI-------SVLAKLTNLE-SLIATNNQI-SDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL--- 258 (466)
T ss_dssp CC-------GGGGGCTTCS-EEECCSSCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC---
T ss_pred CC-------hhhccCCCCC-EEEecCCcc-cccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccc---
Confidence 11 1122222222 232222110 0000 00000001233344444444444432211
Q ss_pred HHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceeeeCccc
Q 005407 492 RVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKRLGNEF 571 (698)
Q Consensus 492 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l~~~~ 571 (698)
..+..+++|+.|++.++....+ +. +..+++|+.|++++|... .++.++.+++|+.|++++|. +..++.
T Consensus 259 ----~~~~~l~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~L~~n~-l~~~~~-- 326 (466)
T 1o6v_A 259 ----APLSGLTKLTELKLGANQISNI---SP-LAGLTALTNLELNENQLE-DISPISNLKNLTYLTLYFNN-ISDISP-- 326 (466)
T ss_dssp ----GGGTTCTTCSEEECCSSCCCCC---GG-GTTCTTCSEEECCSSCCS-CCGGGGGCTTCSEEECCSSC-CSCCGG--
T ss_pred ----hhhhcCCCCCEEECCCCccCcc---cc-ccCCCccCeEEcCCCccc-CchhhcCCCCCCEEECcCCc-CCCchh--
Confidence 0133344555555554444333 22 444555555555555322 22334455555555555543 222211
Q ss_pred cCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCccccCCC
Q 005407 572 LGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGST 651 (698)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~ 651 (698)
...+++|+.|+++++ .+..++ ....+++|+.|++++| .+..+++ +..++
T Consensus 327 ----------------------~~~l~~L~~L~l~~n-~l~~~~------~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~ 375 (466)
T 1o6v_A 327 ----------------------VSSLTKLQRLFFYNN-KVSDVS------SLANLTNINWLSAGHN-QISDLTP-LANLT 375 (466)
T ss_dssp ----------------------GGGCTTCCEEECCSS-CCCCCG------GGTTCTTCCEEECCSS-CCCBCGG-GTTCT
T ss_pred ----------------------hccCccCCEeECCCC-ccCCch------hhccCCCCCEEeCCCC-ccCccch-hhcCC
Confidence 246788888888875 455543 3447888999999887 4666665 66788
Q ss_pred CcceEEEccCcc
Q 005407 652 SLDKLLIYYSRH 663 (698)
Q Consensus 652 ~L~~L~i~~C~~ 663 (698)
+|+.|++++|+-
T Consensus 376 ~L~~L~l~~n~~ 387 (466)
T 1o6v_A 376 RITQLGLNDQAW 387 (466)
T ss_dssp TCCEEECCCEEE
T ss_pred CCCEEeccCCcc
Confidence 999999988863
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=3.2e-21 Score=213.22 Aligned_cols=374 Identities=16% Similarity=0.144 Sum_probs=236.9
Q ss_pred CcceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchh-hcccccCc
Q 005407 267 WKARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKG-IKKLIHLR 343 (698)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~-i~~l~~L~ 343 (698)
..++.+.+.++.... ..+..+..+++|++|+++++..... .+..|.+++.|++|+++ .+..+|.. ++.+++|+
T Consensus 26 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 26 AAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINTI---EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp TTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CCccEEECcCCccCc-cChhhhhcCCcccEEECCCCCcCcc---ChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 567888888876532 2356678899999999999865432 23557889999999998 66777765 99999999
Q ss_pred eEeccccccccc--cchhhhcCCCCcEeeccCCCCCcccc-hhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCce
Q 005407 344 YLALGWNPWIKE--LPEALCELCNLQTLDVSGCDNLKRLP-ERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSF 420 (698)
Q Consensus 344 ~L~L~~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 420 (698)
+|++++|. +.. .|..++++++|++|++++|..+..+| ..++++++|++|++++|......|..++.+++|++|++.
T Consensus 102 ~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 102 YLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp EEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred EEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 99999998 774 46778999999999999988677776 468999999999999886655677777777666666544
Q ss_pred eccCCCCcccc----ccc------------------------ccc----------------------cccccccCceeEc
Q 005407 421 VASRGKSSKAC----SRL------------------------KSL----------------------NKLKHLEGSLTLR 450 (698)
Q Consensus 421 ~~~~~~~~~~~----~~l------------------------~~l----------------------~~L~~L~~~l~i~ 450 (698)
.......+... ..+ ..+ ..+..+. .+.+.
T Consensus 181 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~-~l~l~ 259 (549)
T 2z81_A 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS-EVEFD 259 (549)
T ss_dssp CSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC-EEEEE
T ss_pred cCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc-ccccc
Confidence 33221110000 000 000 0000111 11111
Q ss_pred ccc--CcCCC-----------CCc-----------c---------------------------hhhcccc-cccccccce
Q 005407 451 RLG--NERDL-----------GDD-----------N---------------------------DDEKVDL-KSKMRLVEL 478 (698)
Q Consensus 451 ~l~--~~~~~-----------~~~-----------~---------------------------~~~~~~l-~~~~~L~~L 478 (698)
+.. ....+ +.. . ......+ ..+++|+.|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEE
Confidence 000 00000 000 0 0000011 246677777
Q ss_pred eeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcceeec
Q 005407 479 NLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTL 558 (698)
Q Consensus 479 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L 558 (698)
+++.+..... .......+..+++|+.|++.++....++..+..+..+++|++|++++|......+.++.+++|++|++
T Consensus 340 ~Ls~N~l~~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~L 417 (549)
T 2z81_A 340 DLSENLMVEE--YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL 417 (549)
T ss_dssp ECCSSCCCHH--HHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEEC
T ss_pred EccCCccccc--cccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEEC
Confidence 7776653210 01113346677889999998877665411113467889999999999965543336778899999999
Q ss_pred cCCcceeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCC
Q 005407 559 EGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSP 638 (698)
Q Consensus 559 ~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 638 (698)
++|. ++.++...... ............. . ...+++|++|+++++ .++.++. ...+++|++|++++|
T Consensus 418 s~N~-l~~l~~~~~~~--L~~L~Ls~N~l~~-~--~~~l~~L~~L~Ls~N-~l~~ip~------~~~l~~L~~L~Ls~N- 483 (549)
T 2z81_A 418 SSTG-IRVVKTCIPQT--LEVLDVSNNNLDS-F--SLFLPRLQELYISRN-KLKTLPD------ASLFPVLLVMKISRN- 483 (549)
T ss_dssp TTSC-CSCCCTTSCTT--CSEEECCSSCCSC-C--CCCCTTCCEEECCSS-CCSSCCC------GGGCTTCCEEECCSS-
T ss_pred CCCC-cccccchhcCC--ceEEECCCCChhh-h--cccCChhcEEECCCC-ccCcCCC------cccCccCCEEecCCC-
Confidence 9876 66555432211 1111111111111 0 246889999999985 6777764 236899999999996
Q ss_pred CCCCCCcc-ccCCCCcceEEEccCc
Q 005407 639 ELKALPDY-ILGSTSLDKLLIYYSR 662 (698)
Q Consensus 639 ~L~~lp~~-~~~l~~L~~L~i~~C~ 662 (698)
+++.+|+. +..+++|+.|+++++|
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 484 QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ccCCcCHHHHhcCcccCEEEecCCC
Confidence 68887654 6779999999998877
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=5e-21 Score=214.30 Aligned_cols=144 Identities=13% Similarity=0.017 Sum_probs=102.7
Q ss_pred CCcceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCccc-chhhcccccC
Q 005407 266 CWKARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKI-PKGIKKLIHL 342 (698)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~l-p~~i~~l~~L 342 (698)
+..++.+.+.++..... .+..+.++++|++|+++++..... .+..|.++++|++|+++ .+..+ |..++.+.+|
T Consensus 32 ~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWI---HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp CTTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEE---CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CCcCcEEEccCCccCcC-ChhHhccCccceEEECCCCcccee---ChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 34677888777766422 355778888899999988864432 24557888888888888 45444 6678888889
Q ss_pred ceEecccccccccc-chhhhcCCCCcEeeccCCCCCcccc-hhhhccccCCceecCCccCCCcCCcCCCCCCCCC
Q 005407 343 RYLALGWNPWIKEL-PEALCELCNLQTLDVSGCDNLKRLP-ERIGELINLRHLMNSRQDDSSYMPRGMERLTSLR 415 (698)
Q Consensus 343 ~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 415 (698)
++|++++|. +..+ |..++++++|++|++++|. +..++ +.+..+++|++|++++|......|..++.+++|+
T Consensus 108 ~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 108 KHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp CEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred cEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 999998888 7776 5668888888899888887 55442 3344488888888888744333355567777777
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=4.5e-21 Score=214.64 Aligned_cols=295 Identities=18% Similarity=0.115 Sum_probs=175.5
Q ss_pred ceeeeCC--CCcccchh-hcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCC
Q 005407 321 LRSIDGP--PVRKIPKG-IKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSR 397 (698)
Q Consensus 321 L~~L~l~--~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~ 397 (698)
|+.+++. .+..++.. ++.+++|++|++++|. +.++|..++++++|++|++++|......|..++.+++|++|++++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 4444444 33344433 6667777777777776 777777777777777777777663333355677777777777777
Q ss_pred ccCCCcCCcC-CCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhccccccccccc
Q 005407 398 QDDSSYMPRG-MERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLV 476 (698)
Q Consensus 398 ~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~ 476 (698)
|.....+|.. ++.+++|+.|++..+........ ...+..+..|+ .+.+.... ........+..+++|+
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~~l~~L~-~L~l~~n~-------l~~~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCC---NLQLRNLSHLQ-SLNLSYNE-------PLSLKTEAFKECPQLE 403 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES---TTTTTTCTTCC-EEECCSCS-------CEEECTTTTTTCTTCS
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCc---chhcccCCCCC-EEECCCCc-------CCcCCHHHhcCCccCC
Confidence 7544455543 66777777776654443321100 11222333333 33333211 1112233455667777
Q ss_pred ceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCc-C---CCCCCCCC
Q 005407 477 ELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCEC-L---PCLGKLPC 552 (698)
Q Consensus 477 ~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~-l---~~l~~L~~ 552 (698)
.|+++.+..... .....+..+++|+.|++.++...... |.++..+++|++|++++|..... + ..++.+++
T Consensus 404 ~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 477 (606)
T 3t6q_A 404 LLDLAFTRLKVK----DAQSPFQNLHLLKVLNLSHSLLDISS--EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477 (606)
T ss_dssp EEECTTCCEECC----TTCCTTTTCTTCCEEECTTCCCBTTC--TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred eEECCCCcCCCc----ccchhhhCcccCCEEECCCCccCCcC--HHHHhCCCCCCEEECCCCCCCccccccchhhccCCC
Confidence 777766553210 11123556677777777776655443 56677777888888877765431 1 24566777
Q ss_pred cceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCcccee
Q 005407 553 LETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHL 632 (698)
Q Consensus 553 L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 632 (698)
|+.|++++|. ++.++... ...+++|+.|+++++ .+..... .....+++| .|
T Consensus 478 L~~L~Ls~n~-l~~~~~~~----------------------~~~l~~L~~L~Ls~N-~l~~~~~----~~l~~l~~L-~L 528 (606)
T 3t6q_A 478 LEILVLSFCD-LSSIDQHA----------------------FTSLKMMNHVDLSHN-RLTSSSI----EALSHLKGI-YL 528 (606)
T ss_dssp CCEEECTTSC-CCEECTTT----------------------TTTCTTCCEEECCSS-CCCGGGG----GGGTTCCSC-EE
T ss_pred ccEEECCCCc-cCccChhh----------------------hccccCCCEEECCCC-ccCcCCh----hHhCccccc-EE
Confidence 8888887764 55553322 256788999999885 3443332 244577888 88
Q ss_pred eeccCCCCCCCCc-cccCCCCcceEEEccCcc
Q 005407 633 SICWSPELKALPD-YILGSTSLDKLLIYYSRH 663 (698)
Q Consensus 633 ~l~~c~~L~~lp~-~~~~l~~L~~L~i~~C~~ 663 (698)
++++| .+..+|+ .+..+++|+.|+++++|-
T Consensus 529 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 529 NLASN-HISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp ECCSS-CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred ECcCC-cccccCHhhcccCCCCCEEeCCCCCc
Confidence 99886 5666654 356678999999998873
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=4.7e-21 Score=210.24 Aligned_cols=366 Identities=16% Similarity=0.132 Sum_probs=196.5
Q ss_pred CcceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCce
Q 005407 267 WKARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRY 344 (698)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~ 344 (698)
..++.+.+.++..... .+..+..+++|++|+++++..... .+..|.+++.|++|+++ .+..+|.. .+.+|++
T Consensus 21 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYL---DISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEE---EGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSE
T ss_pred ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCc---ChHHhhcccCCCEEecCCCceeecCcc--ccCCccE
Confidence 5677777777765321 234567788888888888764432 23457788888888888 66777776 7888888
Q ss_pred Eeccccccccc--cchhhhcCCCCcEeeccCCCCCcccchhhhccccC--CceecCCccC--CCcCCcCCCC--------
Q 005407 345 LALGWNPWIKE--LPEALCELCNLQTLDVSGCDNLKRLPERIGELINL--RHLMNSRQDD--SSYMPRGMER-------- 410 (698)
Q Consensus 345 L~L~~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~i~~-------- 410 (698)
|++++|. +.. +|..++++++|++|++++|. +.. ..++.+++| +.|++++|.. ....|..++.
T Consensus 95 L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l 170 (520)
T 2z7x_B 95 LDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170 (520)
T ss_dssp EECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEE
T ss_pred EeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccccccccccccccccccceEEE
Confidence 8888888 664 56778888888888888876 443 346777777 8888877754 3444544444
Q ss_pred ------------------CCCCCccCceeccCCC----Cccccccccccccc------------------------cccc
Q 005407 411 ------------------LTSLRTLGSFVASRGK----SSKACSRLKSLNKL------------------------KHLE 444 (698)
Q Consensus 411 ------------------L~~L~~L~~~~~~~~~----~~~~~~~l~~l~~L------------------------~~L~ 444 (698)
+++|+.|++..+.... .......+..+++| ..++
T Consensus 171 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred EeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 4455555544321000 00000000000000 0122
Q ss_pred CceeEccccCcCCCCCc---------chh-----------hc-cccc---ccccccceeeeeccCCCcccHHHhhccCCC
Q 005407 445 GSLTLRRLGNERDLGDD---------NDD-----------EK-VDLK---SKMRLVELNLWFDRTTETKGHRVVLECLQP 500 (698)
Q Consensus 445 ~~l~i~~l~~~~~~~~~---------~~~-----------~~-~~l~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 500 (698)
.+.+....-...+... ... .. ..+. ...+|+.|+++.+..... .....
T Consensus 251 -~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-------~~~~~ 322 (520)
T 2z7x_B 251 -YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM-------LCPSK 322 (520)
T ss_dssp -EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCC-------CCCSS
T ss_pred -EEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccc-------cchhh
Confidence 2222211100000000 000 00 0000 113456666655543211 01134
Q ss_pred CCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCC--cCC-CCCCCCCcceeeccCCcceee-eCccccCC-C
Q 005407 501 PRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCE--CLP-CLGKLPCLETLTLEGMTSVKR-LGNEFLGI-A 575 (698)
Q Consensus 501 ~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~--~l~-~l~~L~~L~~L~L~~c~~l~~-l~~~~~~~-~ 575 (698)
+++|+.|++.++...... |.+++.+++|++|++++|.... .+| .++.+++|++|++++|. +.. ++...+.. .
T Consensus 323 l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTV--FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTK 399 (520)
T ss_dssp CCCCCEEECCSSCCCTTT--TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCT
T ss_pred CCcccEEEeECCccChhh--hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCc
Confidence 555666666555544421 4555556666666666654432 222 34555666666666544 332 43321111 0
Q ss_pred ccccccccccccccccccCcCC-CcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCcc-ccCCCCc
Q 005407 576 EDDQARGDQAETASSIIRDTAF-PRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDY-ILGSTSL 653 (698)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~-~~~l~~L 653 (698)
................ ...+ ++|+.|+++++ .++.++. ....+++|++|++++| .++.+|.. +..+++|
T Consensus 400 ~L~~L~Ls~N~l~~~~--~~~l~~~L~~L~Ls~N-~l~~ip~-----~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L 470 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTI--FRCLPPRIKVLDLHSN-KIKSIPK-----QVVKLEALQELNVASN-QLKSVPDGIFDRLTSL 470 (520)
T ss_dssp TCCEEECCSSCCCGGG--GGSCCTTCCEEECCSS-CCCCCCG-----GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred cCCEEECcCCCCCcch--hhhhcccCCEEECCCC-cccccch-----hhhcCCCCCEEECCCC-cCCccCHHHhccCCcc
Confidence 0000000000000000 1123 68889998885 6667765 4447899999999986 68889876 6778999
Q ss_pred ceEEEccCc
Q 005407 654 DKLLIYYSR 662 (698)
Q Consensus 654 ~~L~i~~C~ 662 (698)
+.|+++++|
T Consensus 471 ~~L~l~~N~ 479 (520)
T 2z7x_B 471 QKIWLHTNP 479 (520)
T ss_dssp CEEECCSSC
T ss_pred cEEECcCCC
Confidence 999998876
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=1.8e-20 Score=207.35 Aligned_cols=366 Identities=16% Similarity=0.109 Sum_probs=193.0
Q ss_pred eEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCccc-chhhcccccCceEe
Q 005407 270 RHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKI-PKGIKKLIHLRYLA 346 (698)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~l-p~~i~~l~~L~~L~ 346 (698)
+.+.+.++... ..|..+. ++++.|+++++...... +..|.++++|++|+++ .+..+ |..++.+++|++|+
T Consensus 34 ~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 34 SMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSISELR---MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp CEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCCCCC---GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCccccC---hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 45555554442 2333222 67788888777644322 2456777778888777 55555 45577788888888
Q ss_pred ccccccccccchhhhcCCCCcEeeccCCCCCccc--chhhhccccCCceecCCccCCCcCCcCCCCCCCC--CccCceec
Q 005407 347 LGWNPWIKELPEALCELCNLQTLDVSGCDNLKRL--PERIGELINLRHLMNSRQDDSSYMPRGMERLTSL--RTLGSFVA 422 (698)
Q Consensus 347 L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L--~~L~~~~~ 422 (698)
|++|. +..+|.. .+++|++|++++|. +..+ |..++++++|++|++++|.... ..++.+++| +.|++..+
T Consensus 107 Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 107 VSHNR-LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp CTTSC-CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEES
T ss_pred CCCCc-CCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecc
Confidence 88877 7777775 77888888888776 5544 4677788888888887763322 234444444 66655544
Q ss_pred cC--CCC-cccccccc--------------------cccccccccCceeEcccc--------------CcCCC-------
Q 005407 423 SR--GKS-SKACSRLK--------------------SLNKLKHLEGSLTLRRLG--------------NERDL------- 458 (698)
Q Consensus 423 ~~--~~~-~~~~~~l~--------------------~l~~L~~L~~~l~i~~l~--------------~~~~~------- 458 (698)
.. ... +.....+. .+..+..++ .+.+.... ....+
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE-EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEE-EecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 33 110 00000000 000111111 11111000 00000
Q ss_pred -CCcchh--hcccccccccccceeeeeccCCCcc---------------------------cHHHh--------------
Q 005407 459 -GDDNDD--EKVDLKSKMRLVELNLWFDRTTETK---------------------------GHRVV-------------- 494 (698)
Q Consensus 459 -~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~---------------------------~~~~~-------------- 494 (698)
...... .........+|+.|+++.+...... ....+
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence 000000 0000000012222222222211000 00000
Q ss_pred -------hccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCC--cCC-CCCCCCCcceeeccCCcce
Q 005407 495 -------LECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCE--CLP-CLGKLPCLETLTLEGMTSV 564 (698)
Q Consensus 495 -------~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~--~l~-~l~~L~~L~~L~L~~c~~l 564 (698)
......+++|+.|++.++...... |.++..+++|+.|++++|.... .+| .++.+++|+.|++++|. +
T Consensus 339 ~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l 415 (562)
T 3a79_B 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV--FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-L 415 (562)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTT--TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-C
T ss_pred cCCCcccccCccCCCCceEEECCCCccccch--hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-C
Confidence 000145677888888777665532 6677778888888888875443 112 46777888888888765 4
Q ss_pred ee-eCccccCC-CccccccccccccccccccCcCC-CcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCC
Q 005407 565 KR-LGNEFLGI-AEDDQARGDQAETASSIIRDTAF-PRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELK 641 (698)
Q Consensus 565 ~~-l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 641 (698)
+. ++...+.. ................. ...+ ++|+.|+++++ .++.++. ....+++|++|+++++ +++
T Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~~L~~L~L~~N-~l~~ip~-----~~~~l~~L~~L~L~~N-~l~ 486 (562)
T 3a79_B 416 NSHAYDRTCAWAESILVLNLSSNMLTGSV--FRCLPPKVKVLDLHNN-RIMSIPK-----DVTHLQALQELNVASN-QLK 486 (562)
T ss_dssp BSCCSSCCCCCCTTCCEEECCSSCCCGGG--GSSCCTTCSEEECCSS-CCCCCCT-----TTTSSCCCSEEECCSS-CCC
T ss_pred CCccChhhhcCcccCCEEECCCCCCCcch--hhhhcCcCCEEECCCC-cCcccCh-----hhcCCCCCCEEECCCC-CCC
Confidence 33 54432211 11111111111110111 1233 68999999885 7777775 4447899999999985 788
Q ss_pred CCCcc-ccCCCCcceEEEccCc
Q 005407 642 ALPDY-ILGSTSLDKLLIYYSR 662 (698)
Q Consensus 642 ~lp~~-~~~l~~L~~L~i~~C~ 662 (698)
.+|.. +..+++|+.|+++++|
T Consensus 487 ~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 487 SVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCHHHHhcCCCCCEEEecCCC
Confidence 99987 7788999999998876
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=3.6e-20 Score=199.89 Aligned_cols=319 Identities=20% Similarity=0.196 Sum_probs=211.5
Q ss_pred CCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCc
Q 005407 290 NETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQ 367 (698)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~ 367 (698)
.+++++.|.+.++..... + .+..+++|++|+++ .+..+|. ++.+.+|++|++++|. +..+|. ++++++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~l----~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI----D-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCCCC----T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCC
T ss_pred HhccccEEecCCCCCccC----c-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCC
Confidence 467899999988764332 2 26788999999999 6777877 9999999999999998 888888 99999999
Q ss_pred EeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccCce
Q 005407 368 TLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSL 447 (698)
Q Consensus 368 ~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l 447 (698)
+|++++|. +..+|. ++.+++|++|++++| .+..++ .++.+++|+.|.+.... . .+..+..+..|+ .+
T Consensus 116 ~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~~~-~-------~~~~~~~l~~L~-~L 182 (466)
T 1o6v_A 116 GLTLFNNQ-ITDIDP-LKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLSFGNQV-T-------DLKPLANLTTLE-RL 182 (466)
T ss_dssp EEECCSSC-CCCCGG-GTTCTTCSEEEEEEE-EECCCG-GGTTCTTCSEEEEEESC-C-------CCGGGTTCTTCC-EE
T ss_pred EEECCCCC-CCCChH-HcCCCCCCEEECCCC-ccCCCh-hhccCCcccEeecCCcc-c-------CchhhccCCCCC-EE
Confidence 99999987 788876 999999999999998 455555 48899999999875321 1 122244444444 55
Q ss_pred eEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccc
Q 005407 448 TLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSL 527 (698)
Q Consensus 448 ~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l 527 (698)
.+.... +.. ...+..+++|+.|+++.+...... .+..+++|+.|++.++....+ + .+..+
T Consensus 183 ~l~~n~-l~~--------~~~l~~l~~L~~L~l~~n~l~~~~-------~~~~l~~L~~L~l~~n~l~~~---~-~l~~l 242 (466)
T 1o6v_A 183 DISSNK-VSD--------ISVLAKLTNLESLIATNNQISDIT-------PLGILTNLDELSLNGNQLKDI---G-TLASL 242 (466)
T ss_dssp ECCSSC-CCC--------CGGGGGCTTCSEEECCSSCCCCCG-------GGGGCTTCCEEECCSSCCCCC---G-GGGGC
T ss_pred ECcCCc-CCC--------ChhhccCCCCCEEEecCCcccccc-------cccccCCCCEEECCCCCcccc---h-hhhcC
Confidence 544321 111 123566778888888776643211 134466777777777665544 2 45667
Q ss_pred cCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCccccccccc
Q 005407 528 TKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLL 607 (698)
Q Consensus 528 ~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 607 (698)
++|+.|++++|.... ++.+..+++|+.|++++|. +..++. .................. .......+++|+.|++++
T Consensus 243 ~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 243 TNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLE-DISPISNLKNLTYLTLYF 318 (466)
T ss_dssp TTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCS-CCGGGGGCTTCSEEECCS
T ss_pred CCCCEEECCCCcccc-chhhhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCccc-CchhhcCCCCCCEEECcC
Confidence 777777777775433 3336667777777777653 333322 111111111111111000 011135678888888888
Q ss_pred ccccccCcccccCCCcCCCCccceeeeccCCCCCCCCccccCCCCcceEEEccCc
Q 005407 608 MTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 662 (698)
Q Consensus 608 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~C~ 662 (698)
+ .+..++. ...+++|++|++++| .+..++ .+.++++|+.|++++|+
T Consensus 319 n-~l~~~~~------~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 319 N-NISDISP------VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp S-CCSCCGG------GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred C-cCCCchh------hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence 5 4554442 347889999999987 677775 56678999999999885
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=1.8e-20 Score=194.34 Aligned_cols=280 Identities=19% Similarity=0.231 Sum_probs=211.9
Q ss_pred cccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCc
Q 005407 315 FDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRH 392 (698)
Q Consensus 315 ~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~ 392 (698)
+..++.|+.|++. .+..+|. ++.+++|++|++++|. +..+|. +..+++|++|++++|. +..+| .++.+++|++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSE
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCCc-cccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCE
Confidence 4567788888888 6667764 8999999999999998 999988 9999999999999986 77776 5999999999
Q ss_pred eecCCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhccccccc
Q 005407 393 LMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSK 472 (698)
Q Consensus 393 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~ 472 (698)
|++++| .+..+|. +..+++|+.|++..+.... .+..+..+..|+ .+.+..... .....+..+
T Consensus 115 L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~------~~~~~~~l~~L~-~L~l~~~~~---------~~~~~~~~l 176 (347)
T 4fmz_A 115 LYLNED-NISDISP-LANLTKMYSLNLGANHNLS------DLSPLSNMTGLN-YLTVTESKV---------KDVTPIANL 176 (347)
T ss_dssp EECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCC------CCGGGTTCTTCC-EEECCSSCC---------CCCGGGGGC
T ss_pred EECcCC-cccCchh-hccCCceeEEECCCCCCcc------cccchhhCCCCc-EEEecCCCc---------CCchhhccC
Confidence 999998 4556665 8889999999876553322 222344444444 555443221 111126788
Q ss_pred ccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCC
Q 005407 473 MRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPC 552 (698)
Q Consensus 473 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~ 552 (698)
++|+.|+++.+..... ..+..+++|+.|.+.++....+ +. +..+++|++|++++|.... ++.+..+++
T Consensus 177 ~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~l~~n~l~~~---~~-~~~~~~L~~L~l~~n~l~~-~~~~~~l~~ 244 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDI-------SPLASLTSLHYFTAYVNQITDI---TP-VANMTRLNSLKIGNNKITD-LSPLANLSQ 244 (347)
T ss_dssp TTCSEEECTTSCCCCC-------GGGGGCTTCCEEECCSSCCCCC---GG-GGGCTTCCEEECCSSCCCC-CGGGTTCTT
T ss_pred CCCCEEEccCCccccc-------ccccCCCccceeecccCCCCCC---ch-hhcCCcCCEEEccCCccCC-CcchhcCCC
Confidence 9999999998875332 1256678999999988877665 33 7789999999999996544 444889999
Q ss_pred cceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCcccee
Q 005407 553 LETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHL 632 (698)
Q Consensus 553 L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 632 (698)
|+.|++++|. ++.++. ...+++|++|+++++ .++.++ ....+++|++|
T Consensus 245 L~~L~l~~n~-l~~~~~------------------------~~~l~~L~~L~l~~n-~l~~~~------~~~~l~~L~~L 292 (347)
T 4fmz_A 245 LTWLEIGTNQ-ISDINA------------------------VKDLTKLKMLNVGSN-QISDIS------VLNNLSQLNSL 292 (347)
T ss_dssp CCEEECCSSC-CCCCGG------------------------GTTCTTCCEEECCSS-CCCCCG------GGGGCTTCSEE
T ss_pred CCEEECCCCc-cCCChh------------------------HhcCCCcCEEEccCC-ccCCCh------hhcCCCCCCEE
Confidence 9999999874 554421 357899999999996 566654 24478999999
Q ss_pred eeccCCCCCCC-CccccCCCCcceEEEccCc
Q 005407 633 SICWSPELKAL-PDYILGSTSLDKLLIYYSR 662 (698)
Q Consensus 633 ~l~~c~~L~~l-p~~~~~l~~L~~L~i~~C~ 662 (698)
++++|. +... |..+..+++|+.|++++|+
T Consensus 293 ~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 293 FLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ECCSSC-CCGGGHHHHHTCTTCSEEECCSSS
T ss_pred ECcCCc-CCCcChhHhhccccCCEEEccCCc
Confidence 999984 5554 4556779999999999997
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=2.8e-20 Score=206.66 Aligned_cols=143 Identities=18% Similarity=0.210 Sum_probs=104.7
Q ss_pred CCcceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccc-hhhcccccC
Q 005407 266 CWKARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIP-KGIKKLIHL 342 (698)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp-~~i~~l~~L 342 (698)
+..++.+.+.++..... .+..+.++++|++|+++++..... .+..|.++++|++|+++ .+..+| ..++.+.+|
T Consensus 27 ~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp CSSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEE---CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred cccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCcc---CcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 34677888777765322 344677888999999988864332 23457888889998888 466665 568888999
Q ss_pred ceEeccccccccccch-hhhcCCCCcEeeccCCCCCc--ccchhhhccccCCceecCCccCCCcCCcCCCCCCCC
Q 005407 343 RYLALGWNPWIKELPE-ALCELCNLQTLDVSGCDNLK--RLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSL 414 (698)
Q Consensus 343 ~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L 414 (698)
++|++++|. +..+|. .++++++|++|++++|. +. .+|..++++++|++|++++|......|..++.+++|
T Consensus 103 ~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 103 QKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp CEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ccccccccc-cccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 999999888 887775 58888999999998887 44 368888889999999998884433334556666666
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=4.4e-20 Score=202.54 Aligned_cols=359 Identities=14% Similarity=0.073 Sum_probs=212.8
Q ss_pred EEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCccc-chhhcccccCceEec
Q 005407 271 HLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKI-PKGIKKLIHLRYLAL 347 (698)
Q Consensus 271 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~l-p~~i~~l~~L~~L~L 347 (698)
.+.+.++... ..|..+. ++++.|+++++..... .+..|.++++|++|+++ .+..+ |..++.+++|++|+|
T Consensus 4 ~l~ls~n~l~--~ip~~~~--~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 4 LVDRSKNGLI--HVPKDLS--QKTTILNISQNYISEL---WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp EEECTTSCCS--SCCCSCC--TTCSEEECCSSCCCCC---CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred eEecCCCCcc--ccccccc--ccccEEECCCCccccc---ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 4444454442 2344333 8999999999875433 23457899999999999 56666 678999999999999
Q ss_pred cccccccccchhhhcCCCCcEeeccCCCCCc-ccchhhhccccCCceecCCccCCCcCCcCCCCCCCC--CccCceeccC
Q 005407 348 GWNPWIKELPEALCELCNLQTLDVSGCDNLK-RLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSL--RTLGSFVASR 424 (698)
Q Consensus 348 ~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L--~~L~~~~~~~ 424 (698)
++|. +..+|.. .+++|++|++++|.... .+|..++++++|++|++++|.. .. ..++.+++| +.|++..+..
T Consensus 77 s~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 77 SHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-EK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC-CG--GGGGGGTTSCEEEEEEEECTT
T ss_pred CCCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc-ch--hhccccccceeeEEEeecccc
Confidence 9998 9999986 89999999999998333 4678999999999999998843 32 345667777 8887776544
Q ss_pred --CC-Ccccccccc--------------------cccccccccCceeEcccc----------------CcCCCC---C--
Q 005407 425 --GK-SSKACSRLK--------------------SLNKLKHLEGSLTLRRLG----------------NERDLG---D-- 460 (698)
Q Consensus 425 --~~-~~~~~~~l~--------------------~l~~L~~L~~~l~i~~l~----------------~~~~~~---~-- 460 (698)
.. .+.....+. .+..+..++ .+.+.... ....+. .
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE-LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE-ECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhccccee-eccccccccccccceeecchhhhccccchhhccccc
Confidence 11 111111111 001111111 11111100 000000 0
Q ss_pred ---cchhh--cccccccccccceeeeeccCCCcccHHHhhccC-----CCCC--------------------------CC
Q 005407 461 ---DNDDE--KVDLKSKMRLVELNLWFDRTTETKGHRVVLECL-----QPPR--------------------------SL 504 (698)
Q Consensus 461 ---~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----~~~~--------------------------~L 504 (698)
..... .......++|+.|+++.+...+ .++..+ ..++ +|
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L 304 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQG-----QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNI 304 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEES-----CCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCC
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccC-----ccccchhhcccccCceeEeccccccceecchhhhhcccccCce
Confidence 00000 0000012367777777665321 112222 2333 35
Q ss_pred ceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCcceeeeC---ccccCCCccccc
Q 005407 505 EKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMTSVKRLG---NEFLGIAEDDQA 580 (698)
Q Consensus 505 ~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~~l~~l~---~~~~~~~~~~~~ 580 (698)
+.|.+.++..... + +...+++|++|++++|.....+| .++.+++|+.|++++|. ++.++ ..+.........
T Consensus 305 ~~L~l~~n~l~~~---~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 305 KNFTVSGTRMVHM---L-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp SEEEEESSCCCCC---C-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEE
T ss_pred eEEEcCCCccccc---c-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEE
Confidence 5555554443322 1 12578999999999998776444 78999999999999875 55432 111111111111
Q ss_pred cccccccccccc--cCcCCCcccccccccccccccCcccccCCCcCCC-CccceeeeccCCCCCCCCccccCCCCcceEE
Q 005407 581 RGDQAETASSII--RDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIM-PRLRHLSICWSPELKALPDYILGSTSLDKLL 657 (698)
Q Consensus 581 ~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~ 657 (698)
..........++ ....+++|+.|+++++.--...+. .+ ++|+.|++++| +++.+|..+..+++|+.|+
T Consensus 380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~ 450 (520)
T 2z7x_B 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR--------CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELN 450 (520)
T ss_dssp ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG--------SCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEE
T ss_pred ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh--------hhcccCCEEECCCC-cccccchhhhcCCCCCEEE
Confidence 111111111011 123456777777776532222222 23 68999999996 7889998877899999999
Q ss_pred EccCc
Q 005407 658 IYYSR 662 (698)
Q Consensus 658 i~~C~ 662 (698)
+++|.
T Consensus 451 L~~N~ 455 (520)
T 2z7x_B 451 VASNQ 455 (520)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 99984
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=6.7e-20 Score=198.70 Aligned_cols=293 Identities=21% Similarity=0.151 Sum_probs=174.3
Q ss_pred CcceEEEecCccchhhhcccccccccCccceeeeCC--CCccc-chhhcccccCceEeccccccccccchh-hhcCCCCc
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKI-PKGIKKLIHLRYLALGWNPWIKELPEA-LCELCNLQ 367 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~ 367 (698)
++++.|+++++...... +..|.++++|++|+++ .+..+ |..++.+++|++|+|++|. +..+|.. +.++++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLN---QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLT 107 (477)
T ss_dssp TTCSEEECCSSCCCEEC---TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCC
T ss_pred CCCcEEECCCCccceEC---HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCC
Confidence 57888888887644322 3457788888888887 45555 6678888888888888888 8888764 67888888
Q ss_pred EeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccCce
Q 005407 368 TLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSL 447 (698)
Q Consensus 368 ~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l 447 (698)
+|++++|......|..+..+++|++|++++|......|..++.+++|+.|++..+.....+.. .+..+..|+ .+
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~l~~l~~L~-~L 181 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE-----ALSHLHGLI-VL 181 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH-----HHTTCTTCC-EE
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh-----HhcccCCCc-EE
Confidence 888888874444566788888888888888854444556778888888887765544332111 122223333 33
Q ss_pred eEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCC-chhcc
Q 005407 448 TLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTS-NWMLS 526 (698)
Q Consensus 448 ~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p-~~~~~ 526 (698)
.+.... ........+..+++|+.|+++.+.... .+........+|+.|++.++....+ | ..+..
T Consensus 182 ~l~~n~-------i~~~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~ 246 (477)
T 2id5_A 182 RLRHLN-------INAIRDYSFKRLYRLKVLEISHWPYLD-----TMTPNCLYGLNLTSLSITHCNLTAV---PYLAVRH 246 (477)
T ss_dssp EEESCC-------CCEECTTCSCSCTTCCEEEEECCTTCC-----EECTTTTTTCCCSEEEEESSCCCSC---CHHHHTT
T ss_pred eCCCCc-------CcEeChhhcccCcccceeeCCCCcccc-----ccCcccccCccccEEECcCCccccc---CHHHhcC
Confidence 333221 111122334556667777766554211 1112222233666777666655554 3 34556
Q ss_pred ccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCccccccc
Q 005407 527 LTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIF 605 (698)
Q Consensus 527 l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 605 (698)
+++|+.|+|++|......+ .+..+++|+.|+|+++. +..++... ...+++|+.|++
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~----------------------~~~l~~L~~L~L 303 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYA----------------------FRGLNYLRVLNV 303 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTT----------------------BTTCTTCCEEEC
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHH----------------------hcCcccCCEEEC
Confidence 6667777776665443322 35666667777776653 44443222 134566666666
Q ss_pred ccccccccCcccccCCCcCCCCccceeeeccC
Q 005407 606 LLMTNWEEWDDCEIAGGKTIMPRLRHLSICWS 637 (698)
Q Consensus 606 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 637 (698)
+++ .++.++. .....+++|+.|+++++
T Consensus 304 ~~N-~l~~~~~----~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 304 SGN-QLTTLEE----SVFHSVGNLETLILDSN 330 (477)
T ss_dssp CSS-CCSCCCG----GGBSCGGGCCEEECCSS
T ss_pred CCC-cCceeCH----hHcCCCcccCEEEccCC
Confidence 663 4444443 12234566666666654
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=5.7e-20 Score=204.22 Aligned_cols=129 Identities=19% Similarity=0.127 Sum_probs=97.5
Q ss_pred CCcceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccch-hhcccccC
Q 005407 266 CWKARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPK-GIKKLIHL 342 (698)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~-~i~~l~~L 342 (698)
...++.+.+.++.... ..+..+.++++|++|+++++..... .+..|.++++|++|++. .+..+|. .++.+.+|
T Consensus 51 l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 51 FPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSL---ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp CSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEE---CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred CCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCcc---CHhhhcCccccccccccccccccCCCccccccccc
Confidence 4567788877775532 2345677899999999998864332 23557889999999998 6677765 58899999
Q ss_pred ceEeccccccccc--cchhhhcCCCCcEeeccCCCCCcccchhhhccccC----CceecCCcc
Q 005407 343 RYLALGWNPWIKE--LPEALCELCNLQTLDVSGCDNLKRLPERIGELINL----RHLMNSRQD 399 (698)
Q Consensus 343 ~~L~L~~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L----~~L~l~~~~ 399 (698)
++|++++|. +.. +|..++++++|++|++++|......|..++.+++| +.|++++|.
T Consensus 127 ~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 127 KELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp CEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred cEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence 999999998 664 78889999999999999987333345667888888 778887773
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=5e-20 Score=197.14 Aligned_cols=307 Identities=19% Similarity=0.128 Sum_probs=162.1
Q ss_pred cCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCC
Q 005407 288 VYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCN 365 (698)
Q Consensus 288 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~ 365 (698)
+.++++|++|+++++..... + .+..++.|++|+++ .+..+| ++.+++|++|++++|. +..+| ++++++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~----~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~ 107 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM----T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTK 107 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC----T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTT
T ss_pred hhHcCCCCEEEccCCCcccC----h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCc
Confidence 33455666666666543321 1 25556666666665 444454 5666666666666666 66554 566666
Q ss_pred CcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccC
Q 005407 366 LQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEG 445 (698)
Q Consensus 366 L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~ 445 (698)
|++|++++|. +..+| ++.+++|++|++++| .+..++ ++.+++|+.|++..+.... . + .+..+..|+
T Consensus 108 L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~---~---~-~~~~l~~L~- 173 (457)
T 3bz5_A 108 LTYLNCDTNK-LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKIT---K---L-DVTPQTQLT- 173 (457)
T ss_dssp CCEEECCSSC-CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCC---C---C-CCTTCTTCC-
T ss_pred CCEEECCCCc-CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccc---c---c-ccccCCcCC-
Confidence 6666666664 55554 566666666666665 333332 5566666666554332111 0 0 122222222
Q ss_pred ceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhc
Q 005407 446 SLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWML 525 (698)
Q Consensus 446 ~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~ 525 (698)
.+.+.... +.. ..+..+++|+.|+++.+..... .+..+++|+.|++.++....+ | ++
T Consensus 174 ~L~ls~n~-l~~---------l~l~~l~~L~~L~l~~N~l~~~--------~l~~l~~L~~L~Ls~N~l~~i---p--~~ 230 (457)
T 3bz5_A 174 TLDCSFNK-ITE---------LDVSQNKLLNRLNCDTNNITKL--------DLNQNIQLTFLDCSSNKLTEI---D--VT 230 (457)
T ss_dssp EEECCSSC-CCC---------CCCTTCTTCCEEECCSSCCSCC--------CCTTCTTCSEEECCSSCCSCC---C--CT
T ss_pred EEECCCCc-cce---------eccccCCCCCEEECcCCcCCee--------ccccCCCCCEEECcCCccccc---C--cc
Confidence 33332211 000 1145556677777766654321 245567777777777666555 5 55
Q ss_pred cccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCccccccc
Q 005407 526 SLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIF 605 (698)
Q Consensus 526 ~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 605 (698)
.+++|+.|++++|.... ++ .+.+++|+.|+++++ +++.+....... ...++ ...+++|+.|++
T Consensus 231 ~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~n-~L~~L~l~~n~~-------------~~~~~-~~~l~~L~~L~L 293 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQT-DLLEIDLTHNTQ-------------LIYFQ-AEGCRKIKELDV 293 (457)
T ss_dssp TCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTTC-CCSCCCCTTCTT-------------CCEEE-CTTCTTCCCCCC
T ss_pred ccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccCC-CCCEEECCCCcc-------------CCccc-ccccccCCEEEC
Confidence 67777777777775433 33 345565555555432 233332211100 00000 245677888888
Q ss_pred ccccccccCcccc---cCCCcCCCCccceeeeccCCCCCCCCccccCCCCcceEEEccC
Q 005407 606 LLMTNWEEWDDCE---IAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYS 661 (698)
Q Consensus 606 ~~~~~l~~~~~~~---~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~C 661 (698)
++++.+..++... ..-....+++|++|+++++ +++.++ +.++++|+.|+++++
T Consensus 294 s~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 294 THNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSS
T ss_pred CCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCC
Confidence 7776665554300 0001234566667776664 566664 556778888877654
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=1.8e-19 Score=208.61 Aligned_cols=350 Identities=17% Similarity=0.172 Sum_probs=213.2
Q ss_pred CCCcceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCccc-chhhccccc
Q 005407 265 PCWKARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKI-PKGIKKLIH 341 (698)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~l-p~~i~~l~~ 341 (698)
.+..++.+.+..+.... ..+..+.++++|++|+++++..... ..+..|.++++|++|+++ .+..+ |..++++.+
T Consensus 22 lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~--i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLT--IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCE--ECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCccc--cCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 45678888888876632 2456778889999999988743221 124557888899999988 55555 777889999
Q ss_pred CceEeccccccccc-cchh--hhcCCCCcEeeccCCCCCccc--chhhhccccCCceecCCccCCCcCCcCCCCC--CCC
Q 005407 342 LRYLALGWNPWIKE-LPEA--LCELCNLQTLDVSGCDNLKRL--PERIGELINLRHLMNSRQDDSSYMPRGMERL--TSL 414 (698)
Q Consensus 342 L~~L~L~~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L--~~L 414 (698)
|++|+|++|. +.. +|.. ++++++|++|++++|. +..+ +..++++++|++|++++|......|..++.+ ++|
T Consensus 99 L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 99 LFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp CCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred cCEeeCcCCC-CCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence 9999999988 553 5655 8889999999999887 4443 3568889999999998886555556666655 677
Q ss_pred CccCceeccCCCCcccccccccccc---cccccCceeEccccCcCCC-----------------------------CCcc
Q 005407 415 RTLGSFVASRGKSSKACSRLKSLNK---LKHLEGSLTLRRLGNERDL-----------------------------GDDN 462 (698)
Q Consensus 415 ~~L~~~~~~~~~~~~~~~~l~~l~~---L~~L~~~l~i~~l~~~~~~-----------------------------~~~~ 462 (698)
+.|++..+........ .+..+.+ ...++ .+.+....-.... ....
T Consensus 177 ~~L~L~~n~l~~~~~~--~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSV--DWGKCMNPFRNMVLE-ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CCCEECCSBSCCCCCC--CCCSSSCTTTTCCBS-EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred ceEECCCCcccccccc--chhhcCCccccCcee-EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 7776654433221000 0111100 00011 2222111000000 0000
Q ss_pred hhhcccccc--cccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCC
Q 005407 463 DDEKVDLKS--KMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFL 540 (698)
Q Consensus 463 ~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~ 540 (698)
......+.. .++|+.|+++.+.... .....+..+++|+.|++.++....+. |..+..+++|++|+|++|..
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFS-----LNSRVFETLKDLKVLNLAYNKINKIA--DEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCE-----ECSCCSSSCCCCCEEEEESCCCCEEC--TTTTTTCSSCCEEEEESCCC
T ss_pred CCChhhhhccccCCccEEECCCCcccc-----cChhhhhcCCCCCEEECCCCcCCCCC--hHHhcCCCCCCEEECCCCCC
Confidence 001111222 2577888877665321 12345667788899999888776654 56677888999999998876
Q ss_pred CCcCC-CCCCCCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCccccc
Q 005407 541 CECLP-CLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEI 619 (698)
Q Consensus 541 ~~~l~-~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 619 (698)
....+ .++.+++|+.|+++++. +..++...+ ..+++|+.|+++++ .++.++
T Consensus 327 ~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~----------------------~~l~~L~~L~Ls~N-~l~~i~---- 378 (844)
T 3j0a_A 327 GELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTF----------------------KFLEKLQTLDLRDN-ALTTIH---- 378 (844)
T ss_dssp SCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCS----------------------CSCCCCCEEEEETC-CSCCCS----
T ss_pred CccCHHHhcCCCCCCEEECCCCC-CCccChhhh----------------------cCCCCCCEEECCCC-CCCccc----
Confidence 55444 67888899999998864 665554332 34566666666653 333322
Q ss_pred CCCcCCCCccceeeeccC-------------------CCCCCCCc--cccCCCCcceEEEccCc
Q 005407 620 AGGKTIMPRLRHLSICWS-------------------PELKALPD--YILGSTSLDKLLIYYSR 662 (698)
Q Consensus 620 ~~~~~~~~~L~~L~l~~c-------------------~~L~~lp~--~~~~l~~L~~L~i~~C~ 662 (698)
.+++|+.|.++++ .++..++. .+.++++|+.|+++++.
T Consensus 379 -----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 379 -----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp -----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred -----CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 2444555555443 13333332 12357888888888764
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=2e-20 Score=197.14 Aligned_cols=281 Identities=20% Similarity=0.193 Sum_probs=212.0
Q ss_pred cCccceeeeCC--CCcccchh-hcccccCceEeccccccccccch-hhhcCCCCcEeeccCCCCCccc-chhhhccccCC
Q 005407 317 RLTCLRSIDGP--PVRKIPKG-IKKLIHLRYLALGWNPWIKELPE-ALCELCNLQTLDVSGCDNLKRL-PERIGELINLR 391 (698)
Q Consensus 317 ~l~~L~~L~l~--~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l-p~~i~~l~~L~ 391 (698)
.+.+++++++. .+..+|.. +..+++|++|++++|. +..+|. .++.+++|++|++++|. +..+ |..++.+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCC
Confidence 35667777776 67788877 6889999999999998 888765 79999999999999988 6655 45589999999
Q ss_pred ceecCCccCCCcCCcC-CCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhccccc
Q 005407 392 HLMNSRQDDSSYMPRG-MERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLK 470 (698)
Q Consensus 392 ~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~ 470 (698)
+|++++| .+..+|.. ++++++|++|++..+........ .+. .++.|+ .+.+.... .....+.
T Consensus 121 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~---~l~~L~-~L~l~~n~----------l~~~~~~ 183 (390)
T 3o6n_A 121 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD--TFQ---ATTSLQ-NLQLSSNR----------LTHVDLS 183 (390)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT--TTS---SCTTCC-EEECCSSC----------CSBCCGG
T ss_pred EEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChh--hcc---CCCCCC-EEECCCCc----------CCccccc
Confidence 9999998 66678876 48999999998877655432211 233 333343 44443221 1112356
Q ss_pred ccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCC
Q 005407 471 SKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKL 550 (698)
Q Consensus 471 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L 550 (698)
.+++|+.|+++.+.. ..+..+++|+.|++.++....+ |.. .+++|+.|++++|... ..+.++.+
T Consensus 184 ~l~~L~~L~l~~n~l----------~~~~~~~~L~~L~l~~n~l~~~---~~~--~~~~L~~L~l~~n~l~-~~~~l~~l 247 (390)
T 3o6n_A 184 LIPSLFHANVSYNLL----------STLAIPIAVEELDASHNSINVV---RGP--VNVELTILKLQHNNLT-DTAWLLNY 247 (390)
T ss_dssp GCTTCSEEECCSSCC----------SEEECCSSCSEEECCSSCCCEE---ECC--CCSSCCEEECCSSCCC-CCGGGGGC
T ss_pred cccccceeecccccc----------cccCCCCcceEEECCCCeeeec---ccc--ccccccEEECCCCCCc-ccHHHcCC
Confidence 678899999987763 2334567899999998877666 432 3579999999999654 45778899
Q ss_pred CCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccc
Q 005407 551 PCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLR 630 (698)
Q Consensus 551 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~ 630 (698)
++|+.|+++++. ++.++... ...+++|+.|+++++ .++.++. ....+|+|+
T Consensus 248 ~~L~~L~Ls~n~-l~~~~~~~----------------------~~~l~~L~~L~L~~n-~l~~~~~-----~~~~l~~L~ 298 (390)
T 3o6n_A 248 PGLVEVDLSYNE-LEKIMYHP----------------------FVKMQRLERLYISNN-RLVALNL-----YGQPIPTLK 298 (390)
T ss_dssp TTCSEEECCSSC-CCEEESGG----------------------GTTCSSCCEEECCSS-CCCEEEC-----SSSCCTTCC
T ss_pred CCccEEECCCCc-CCCcChhH----------------------ccccccCCEEECCCC-cCcccCc-----ccCCCCCCC
Confidence 999999999975 55553322 256899999999984 6666654 345789999
Q ss_pred eeeeccCCCCCCCCccccCCCCcceEEEccCc
Q 005407 631 HLSICWSPELKALPDYILGSTSLDKLLIYYSR 662 (698)
Q Consensus 631 ~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~C~ 662 (698)
+|++++| .+..+|..+..+++|+.|++++|+
T Consensus 299 ~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 299 VLDLSHN-HLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp EEECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred EEECCCC-cceecCccccccCcCCEEECCCCc
Confidence 9999997 788999888788999999999987
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=7.5e-20 Score=202.19 Aligned_cols=129 Identities=19% Similarity=0.139 Sum_probs=108.1
Q ss_pred CcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccc-hhhcccccCceEeccccccccccchh-hhcCCCCc
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIP-KGIKKLIHLRYLALGWNPWIKELPEA-LCELCNLQ 367 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~ 367 (698)
+++++|+++++...... +..|.++++|++|+++ .+..++ ..++.+.+|++|++++|. +..+|.. ++++++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG---HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLK 101 (549)
T ss_dssp TTCCEEECCSSCCCEEC---SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCC
T ss_pred CCccEEECcCCccCccC---hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCc
Confidence 78999999998754332 3458899999999999 566665 569999999999999999 8887765 99999999
Q ss_pred EeeccCCCCCc--ccchhhhccccCCceecCCccCCCcCC-cCCCCCCCCCccCceeccCC
Q 005407 368 TLDVSGCDNLK--RLPERIGELINLRHLMNSRQDDSSYMP-RGMERLTSLRTLGSFVASRG 425 (698)
Q Consensus 368 ~L~l~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~ 425 (698)
+|++++|. +. ..|..++++++|++|++++|.....+| ..++++++|++|++..+...
T Consensus 102 ~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 102 YLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp EEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred EEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 99999987 55 456789999999999999997677776 57899999999998876654
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=196.56 Aligned_cols=292 Identities=21% Similarity=0.203 Sum_probs=216.2
Q ss_pred ccceeeeCC--CCcccc-hhhcccccCceEecccccccccc-chhhhcCCCCcEeeccCCCCCcccchh-hhccccCCce
Q 005407 319 TCLRSIDGP--PVRKIP-KGIKKLIHLRYLALGWNPWIKEL-PEALCELCNLQTLDVSGCDNLKRLPER-IGELINLRHL 393 (698)
Q Consensus 319 ~~L~~L~l~--~~~~lp-~~i~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L 393 (698)
..+++|+++ .+..++ ..+..+++|++|+|++|. +..+ |..++++++|++|+|++|. +..+|.. ++++++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEE
Confidence 467888888 666664 569999999999999998 7766 7789999999999999987 7788765 6899999999
Q ss_pred ecCCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccc
Q 005407 394 MNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKM 473 (698)
Q Consensus 394 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~ 473 (698)
++++|......|..+..+++|+.|++..+....... ..+..+..|+ .+.+.... ........+..++
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~-~L~l~~n~-------l~~~~~~~l~~l~ 176 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-----RAFSGLNSLE-QLTLEKCN-------LTSIPTEALSHLH 176 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-----TSSTTCTTCC-EEEEESCC-------CSSCCHHHHTTCT
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeCh-----hhccCCCCCC-EEECCCCc-------CcccChhHhcccC
Confidence 999996655667788999999999887665443211 1233344444 55554321 1112223466788
Q ss_pred cccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC--CCCCCC
Q 005407 474 RLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP--CLGKLP 551 (698)
Q Consensus 474 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~--~l~~L~ 551 (698)
+|+.|++..+.... .....+..+++|+.|++.++..... +|.......+|+.|++++|... .+| .++.++
T Consensus 177 ~L~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~ 248 (477)
T 2id5_A 177 GLIVLRLRHLNINA-----IRDYSFKRLYRLKVLEISHWPYLDT--MTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLV 248 (477)
T ss_dssp TCCEEEEESCCCCE-----ECTTCSCSCTTCCEEEEECCTTCCE--ECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCT
T ss_pred CCcEEeCCCCcCcE-----eChhhcccCcccceeeCCCCccccc--cCcccccCccccEEECcCCccc-ccCHHHhcCcc
Confidence 99999999876432 1234567788999999988654332 1555555669999999999654 455 578899
Q ss_pred CcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccce
Q 005407 552 CLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRH 631 (698)
Q Consensus 552 ~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~ 631 (698)
+|+.|+|+++. ++.++...+ ..+++|+.|++.++ .+..+.. ..+..+++|++
T Consensus 249 ~L~~L~Ls~n~-l~~~~~~~~----------------------~~l~~L~~L~L~~n-~l~~~~~----~~~~~l~~L~~ 300 (477)
T 2id5_A 249 YLRFLNLSYNP-ISTIEGSML----------------------HELLRLQEIQLVGG-QLAVVEP----YAFRGLNYLRV 300 (477)
T ss_dssp TCCEEECCSSC-CCEECTTSC----------------------TTCTTCCEEECCSS-CCSEECT----TTBTTCTTCCE
T ss_pred ccCeeECCCCc-CCccChhhc----------------------cccccCCEEECCCC-ccceECH----HHhcCcccCCE
Confidence 99999999876 667665432 56899999999985 4555432 24557899999
Q ss_pred eeeccCCCCCCCCcc-ccCCCCcceEEEccCc
Q 005407 632 LSICWSPELKALPDY-ILGSTSLDKLLIYYSR 662 (698)
Q Consensus 632 L~l~~c~~L~~lp~~-~~~l~~L~~L~i~~C~ 662 (698)
|++++| .++.+|.. +..+++|+.|+++++|
T Consensus 301 L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 301 LNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred EECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 999996 78888864 4678999999998876
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=2.9e-19 Score=206.97 Aligned_cols=323 Identities=18% Similarity=0.109 Sum_probs=218.2
Q ss_pred CCCcceEEEecCccchhhhcccccccccCccceeeeCCC---Cccc-chhhcccccCceEecccccccccc-chhhhcCC
Q 005407 290 NETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGPP---VRKI-PKGIKKLIHLRYLALGWNPWIKEL-PEALCELC 364 (698)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~---~~~l-p~~i~~l~~L~~L~L~~~~~l~~l-p~~~~~l~ 364 (698)
-.++++.|+++++..... .+..|.++++|++|+++. ...+ |..++++++|++|+|++|. +..+ |..+++++
T Consensus 22 lp~~l~~LdLs~N~i~~i---~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV---TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEESCCCCEE---CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCS
T ss_pred CCCCcCEEECCCCcCCcc---ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCc
Confidence 457899999999875433 245689999999999983 3455 6779999999999999999 7765 88899999
Q ss_pred CCcEeeccCCCCCcccchh--hhccccCCceecCCccCCCcCC-cCCCCCCCCCccCceeccCCCCcccccccccccccc
Q 005407 365 NLQTLDVSGCDNLKRLPER--IGELINLRHLMNSRQDDSSYMP-RGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLK 441 (698)
Q Consensus 365 ~L~~L~l~~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~ 441 (698)
+|++|+|++|.....+|.. ++++++|++|++++|......| ..++++++|++|++..+........ .+..+.. .
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~--~l~~l~~-~ 174 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH--ELEPLQG-K 174 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG--GGHHHHH-C
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH--HcccccC-C
Confidence 9999999999844456665 8999999999999995544333 5689999999999877654432111 2222211 3
Q ss_pred cccCceeEccccCcCCCCCcchhhcccccccc------cccceeeeeccCCCccc--H----------------------
Q 005407 442 HLEGSLTLRRLGNERDLGDDNDDEKVDLKSKM------RLVELNLWFDRTTETKG--H---------------------- 491 (698)
Q Consensus 442 ~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~--~---------------------- 491 (698)
.|+ .+.+....-.. .....+..+. .|+.|+++.+....... .
T Consensus 175 ~L~-~L~L~~n~l~~-------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 175 TLS-FFSLAANSLYS-------RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp SSC-CCEECCSBSCC-------CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred ccc-eEECCCCcccc-------ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 333 44443221110 1111112222 37777776653221100 0
Q ss_pred -------HHhhccCCC--CCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCC
Q 005407 492 -------RVVLECLQP--PRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGM 561 (698)
Q Consensus 492 -------~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c 561 (698)
......+.. +++|+.|++.++....+. |..+..+++|+.|+|++|......+ .++.+++|++|+|++|
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN--SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC--SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccC--hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC
Confidence 000011111 367888888877766553 6677888999999999987665544 6788999999999886
Q ss_pred cceeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCC
Q 005407 562 TSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELK 641 (698)
Q Consensus 562 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 641 (698)
. ++.+.... ...+++|+.|+++++ .+..++. .....+++|+.|++++| .++
T Consensus 325 ~-l~~~~~~~----------------------~~~l~~L~~L~L~~N-~i~~~~~----~~~~~l~~L~~L~Ls~N-~l~ 375 (844)
T 3j0a_A 325 L-LGELYSSN----------------------FYGLPKVAYIDLQKN-HIAIIQD----QTFKFLEKLQTLDLRDN-ALT 375 (844)
T ss_dssp C-CSCCCSCS----------------------CSSCTTCCEEECCSC-CCCCCCS----SCSCSCCCCCEEEEETC-CSC
T ss_pred C-CCccCHHH----------------------hcCCCCCCEEECCCC-CCCccCh----hhhcCCCCCCEEECCCC-CCC
Confidence 5 54443322 256889999999985 5665553 23457899999999986 577
Q ss_pred CCCccccCCCCcceEEEccCc
Q 005407 642 ALPDYILGSTSLDKLLIYYSR 662 (698)
Q Consensus 642 ~lp~~~~~l~~L~~L~i~~C~ 662 (698)
.++. +++|+.|++++++
T Consensus 376 ~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 376 TIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp CCSS----CCSCSEEEEESCC
T ss_pred cccC----CCCcchhccCCCC
Confidence 6664 5778888877664
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=1.6e-19 Score=205.01 Aligned_cols=151 Identities=19% Similarity=0.126 Sum_probs=97.5
Q ss_pred CcceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccch-hhcccccCc
Q 005407 267 WKARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPK-GIKKLIHLR 343 (698)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~-~i~~l~~L~ 343 (698)
.+++++.+.++..... .+..+.++++|++|+++++..... .+..|.+++.|++|+++ .+..+|. .++.+.+|+
T Consensus 25 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKL---EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCC---CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCcc---CHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 4677777776655321 233466777888888877654332 23446677778888777 5667776 477788888
Q ss_pred eEeccccccccccc-hhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCC-cCC--CCCCCCCccCc
Q 005407 344 YLALGWNPWIKELP-EALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMP-RGM--ERLTSLRTLGS 419 (698)
Q Consensus 344 ~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i--~~L~~L~~L~~ 419 (698)
+|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++++|. +..++ ..+ ..+++|+.|++
T Consensus 101 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 101 ELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp EEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEEC
T ss_pred EEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEEC
Confidence 88888877 66665 457778888888888776444445567777888888887773 33333 222 24466776665
Q ss_pred eecc
Q 005407 420 FVAS 423 (698)
Q Consensus 420 ~~~~ 423 (698)
..+.
T Consensus 179 ~~n~ 182 (680)
T 1ziw_A 179 SSNQ 182 (680)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 5443
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=4.1e-19 Score=190.05 Aligned_cols=302 Identities=17% Similarity=0.149 Sum_probs=214.3
Q ss_pred CcceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCce
Q 005407 267 WKARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRY 344 (698)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~ 344 (698)
..++.+.+.++.... . +.+..+++|+.|+++++..... + +..++.|++|+++ .+..+| ++.+++|++
T Consensus 42 ~~L~~L~Ls~n~l~~--~-~~l~~l~~L~~L~Ls~n~l~~~----~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD--M-TGIEKLTGLTKLICTSNNITTL----D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSCCCC--C-TTGGGCTTCSEEECCSSCCSCC----C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred CCCCEEEccCCCccc--C-hhhcccCCCCEEEccCCcCCeE----c--cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 456777777766532 2 3577899999999999875542 1 7888999999998 666765 889999999
Q ss_pred EeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccC
Q 005407 345 LALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASR 424 (698)
Q Consensus 345 L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~ 424 (698)
|++++|. +..+| ++.+++|++|++++|. +..+| ++.+++|++|++++|..+..+ .++.+++|+.|++..+..
T Consensus 111 L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 111 LNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp EECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred EECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence 9999998 88886 8999999999999987 77774 889999999999999766666 478899999998876654
Q ss_pred CCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCC
Q 005407 425 GKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSL 504 (698)
Q Consensus 425 ~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L 504 (698)
...+ +. .+..|+ .+.+.... +. ...+..+++|+.|+++.+.... ++ +..+++|
T Consensus 183 ~~l~-----l~---~l~~L~-~L~l~~N~-l~---------~~~l~~l~~L~~L~Ls~N~l~~------ip--~~~l~~L 235 (457)
T 3bz5_A 183 TELD-----VS---QNKLLN-RLNCDTNN-IT---------KLDLNQNIQLTFLDCSSNKLTE------ID--VTPLTQL 235 (457)
T ss_dssp CCCC-----CT---TCTTCC-EEECCSSC-CS---------CCCCTTCTTCSEEECCSSCCSC------CC--CTTCTTC
T ss_pred ceec-----cc---cCCCCC-EEECcCCc-CC---------eeccccCCCCCEEECcCCcccc------cC--ccccCCC
Confidence 4321 22 333333 34433211 11 1136778999999999887543 12 6678899
Q ss_pred ceEEEEeecCCCCCCCCchhccccCc----------cEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceeeeCccccCC
Q 005407 505 EKLEILAYEGDTIPPTSNWMLSLTKL----------RVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKRLGNEFLGI 574 (698)
Q Consensus 505 ~~L~l~~~~~~~~~~~p~~~~~l~~L----------~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~ 574 (698)
+.|++.++....+ | ++.+++| +.|++++|.....+| .+.+++|+.|++++|..+..++......
T Consensus 236 ~~L~l~~N~l~~~---~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L 309 (457)
T 3bz5_A 236 TYFDCSVNPLTEL---D--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGI 309 (457)
T ss_dssp SEEECCSSCCSCC---C--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCC
T ss_pred CEEEeeCCcCCCc---C--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcc
Confidence 9999998877766 3 2334444 555555555555554 5678999999999999888886532111
Q ss_pred CccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCC
Q 005407 575 AEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALP 644 (698)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp 644 (698)
. .......++|+.|++++ +.++.++ +..+++|+.|+++++ ++..+|
T Consensus 310 ~---------------~L~l~~~~~L~~L~L~~-N~l~~l~-------l~~l~~L~~L~l~~N-~l~~l~ 355 (457)
T 3bz5_A 310 T---------------ELDLSQNPKLVYLYLNN-TELTELD-------VSHNTKLKSLSCVNA-HIQDFS 355 (457)
T ss_dssp S---------------CCCCTTCTTCCEEECTT-CCCSCCC-------CTTCTTCSEEECCSS-CCCBCT
T ss_pred e---------------EechhhcccCCEEECCC-Ccccccc-------cccCCcCcEEECCCC-CCCCcc
Confidence 0 00124567888888877 3455542 347899999999884 676654
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=4.6e-19 Score=196.07 Aligned_cols=339 Identities=18% Similarity=0.124 Sum_probs=206.8
Q ss_pred CCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccc-hhhcccccCceEecccccccccc-chhhhcCCCC
Q 005407 291 ETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIP-KGIKKLIHLRYLALGWNPWIKEL-PEALCELCNL 366 (698)
Q Consensus 291 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp-~~i~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L 366 (698)
+...++++++++..... +..+. +.|+.|+++ .+..+| ..++.+++|++|+|++|. +..+ |..++++++|
T Consensus 30 ~~~~~~l~ls~~~L~~i----p~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 30 NELESMVDYSNRNLTHV----PKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDL 102 (562)
T ss_dssp ---CCEEECTTSCCCSC----CTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTC
T ss_pred cCCCcEEEcCCCCCccC----CCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCC
Confidence 44458899988865432 22122 678888888 677776 579999999999999998 8877 6679999999
Q ss_pred cEeeccCCCCCcccchhhhccccCCceecCCccCCCcC--CcCCCCCCCCCccCceeccCCCCccccccccccccccccc
Q 005407 367 QTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYM--PRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLE 444 (698)
Q Consensus 367 ~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~--p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ 444 (698)
++|++++|. +..+|.. .+++|++|++++|. +..+ |..++++++|++|++..+..... .+..+..+ +++
T Consensus 103 ~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L-~L~ 172 (562)
T 3a79_B 103 EYLDVSHNR-LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHL-HLS 172 (562)
T ss_dssp CEEECTTSC-CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTS-CEE
T ss_pred CEEECCCCc-CCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccC-----chhhhhhc-eee
Confidence 999999988 8899987 89999999999995 4444 57899999999999887655431 23333443 223
Q ss_pred CceeEccccC--cCCCC----C---------------cchhhcccccccccccceeeeecc-------------------
Q 005407 445 GSLTLRRLGN--ERDLG----D---------------DNDDEKVDLKSKMRLVELNLWFDR------------------- 484 (698)
Q Consensus 445 ~~l~i~~l~~--~~~~~----~---------------~~~~~~~~l~~~~~L~~L~l~~~~------------------- 484 (698)
.+.+..... ..... . ........+..+++|+.++++.+.
T Consensus 173 -~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L 251 (562)
T 3a79_B 173 -CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251 (562)
T ss_dssp -EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSC
T ss_pred -EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcc
Confidence 333322111 00000 0 000111123345566666665542
Q ss_pred ---------CCCcccHHHhhccCCCCCCCceEEEEeecCC-CCCCCCchh------------------------------
Q 005407 485 ---------TTETKGHRVVLECLQPPRSLEKLEILAYEGD-TIPPTSNWM------------------------------ 524 (698)
Q Consensus 485 ---------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~p~~~------------------------------ 524 (698)
... .......... ..++|+.|++.++... .+ |.++
T Consensus 252 ~~L~L~~~~l~~-~~~~~~~~~~-~~~~L~~L~l~~n~l~~~i---p~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~ 326 (562)
T 3a79_B 252 LNVTLQHIETTW-KCSVKLFQFF-WPRPVEYLNIYNLTITERI---DREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326 (562)
T ss_dssp EEEEEEEEEECH-HHHHHHHHHH-TTSSEEEEEEEEEEECSCC---CCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHH
T ss_pred eEEEecCCcCcH-HHHHHHHHhh-hcccccEEEEeccEeeccc---cchhhhcccccchheehhhcccceeecChhhhhh
Confidence 100 0000111111 1125666666655543 22 2221
Q ss_pred -----------------------ccccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCcceeeeCc---cccCCCcc
Q 005407 525 -----------------------LSLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMTSVKRLGN---EFLGIAED 577 (698)
Q Consensus 525 -----------------------~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~~l~~l~~---~~~~~~~~ 577 (698)
..+++|++|++++|......| .++.+++|+.|+++++. ++.++. .+......
T Consensus 327 ~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L 405 (562)
T 3a79_B 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSL 405 (562)
T ss_dssp HHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTC
T ss_pred hhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCC
Confidence 567899999999998776454 78899999999999864 665542 11111111
Q ss_pred ccccccccccccccc--cCcCCCcccccccccccccccCcccccCCCcCCC-CccceeeeccCCCCCCCCccccCCCCcc
Q 005407 578 DQARGDQAETASSII--RDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIM-PRLRHLSICWSPELKALPDYILGSTSLD 654 (698)
Q Consensus 578 ~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L~~lp~~~~~l~~L~ 654 (698)
.............++ ....+++|+.|+++++.--...+. .+ ++|++|++++| +++.+|..+..+++|+
T Consensus 406 ~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~ 476 (562)
T 3a79_B 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR--------CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQ 476 (562)
T ss_dssp CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS--------SCCTTCSEEECCSS-CCCCCCTTTTSSCCCS
T ss_pred CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh--------hhcCcCCEEECCCC-cCcccChhhcCCCCCC
Confidence 111111111111011 123456677777766432122221 33 68999999996 7899998888899999
Q ss_pred eEEEccCc
Q 005407 655 KLLIYYSR 662 (698)
Q Consensus 655 ~L~i~~C~ 662 (698)
.|+++++.
T Consensus 477 ~L~L~~N~ 484 (562)
T 3a79_B 477 ELNVASNQ 484 (562)
T ss_dssp EEECCSSC
T ss_pred EEECCCCC
Confidence 99999875
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=8.4e-20 Score=203.16 Aligned_cols=281 Identities=20% Similarity=0.197 Sum_probs=211.8
Q ss_pred CccceeeeCC--CCcccchh-hcccccCceEeccccccccccch-hhhcCCCCcEeeccCCCCCcccch-hhhccccCCc
Q 005407 318 LTCLRSIDGP--PVRKIPKG-IKKLIHLRYLALGWNPWIKELPE-ALCELCNLQTLDVSGCDNLKRLPE-RIGELINLRH 392 (698)
Q Consensus 318 l~~L~~L~l~--~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~ 392 (698)
+..++++++. .+..+|.. +..+++|++|+|++|. +..+|. .++.+++|++|+|++|. +..+|+ .++++++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCE
Confidence 5567777776 56778876 6889999999999999 887765 79999999999999998 666654 5699999999
Q ss_pred eecCCccCCCcCCcC-CCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccc
Q 005407 393 LMNSRQDDSSYMPRG-MERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKS 471 (698)
Q Consensus 393 L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~ 471 (698)
|++++| .+..+|.. ++.+++|++|++..+.....+.. .+..+..|+ .|.+.... .....+..
T Consensus 128 L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l~~L~-~L~L~~N~----------l~~~~~~~ 190 (597)
T 3oja_B 128 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-----TFQATTSLQ-NLQLSSNR----------LTHVDLSL 190 (597)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-----TTTTCTTCC-EEECTTSC----------CSBCCGGG
T ss_pred EEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-----hhhcCCcCc-EEECcCCC----------CCCcChhh
Confidence 999999 56677766 58999999999877655432211 233334443 44443321 11123566
Q ss_pred cccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCC
Q 005407 472 KMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLP 551 (698)
Q Consensus 472 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~ 551 (698)
+++|+.|+++.+.. ..+..+++|+.|++.++....+ |..+ .++|+.|+|++|... .++.++.++
T Consensus 191 l~~L~~L~l~~n~l----------~~l~~~~~L~~L~ls~n~l~~~---~~~~--~~~L~~L~L~~n~l~-~~~~l~~l~ 254 (597)
T 3oja_B 191 IPSLFHANVSYNLL----------STLAIPIAVEELDASHNSINVV---RGPV--NVELTILKLQHNNLT-DTAWLLNYP 254 (597)
T ss_dssp CTTCSEEECCSSCC----------SEEECCTTCSEEECCSSCCCEE---ECSC--CSCCCEEECCSSCCC-CCGGGGGCT
T ss_pred hhhhhhhhcccCcc----------ccccCCchhheeeccCCccccc---cccc--CCCCCEEECCCCCCC-CChhhccCC
Confidence 78899999987763 3345667899999998877666 3332 479999999999644 457788999
Q ss_pred CcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccce
Q 005407 552 CLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRH 631 (698)
Q Consensus 552 ~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~ 631 (698)
+|+.|+|++|. +..++... ...+++|+.|++++ +.+..++. ....+|+|+.
T Consensus 255 ~L~~L~Ls~N~-l~~~~~~~----------------------~~~l~~L~~L~Ls~-N~l~~l~~-----~~~~l~~L~~ 305 (597)
T 3oja_B 255 GLVEVDLSYNE-LEKIMYHP----------------------FVKMQRLERLYISN-NRLVALNL-----YGQPIPTLKV 305 (597)
T ss_dssp TCSEEECCSSC-CCEEESGG----------------------GTTCSSCCEEECTT-SCCCEEEC-----SSSCCTTCCE
T ss_pred CCCEEECCCCc-cCCCCHHH----------------------hcCccCCCEEECCC-CCCCCCCc-----ccccCCCCcE
Confidence 99999999976 55553322 25689999999998 46666654 3457999999
Q ss_pred eeeccCCCCCCCCccccCCCCcceEEEccCcc
Q 005407 632 LSICWSPELKALPDYILGSTSLDKLLIYYSRH 663 (698)
Q Consensus 632 L~l~~c~~L~~lp~~~~~l~~L~~L~i~~C~~ 663 (698)
|++++| .+..+|..+..+++|+.|++++|+-
T Consensus 306 L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 306 LDLSHN-HLLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp EECCSS-CCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred EECCCC-CCCccCcccccCCCCCEEECCCCCC
Confidence 999997 6889998888899999999999873
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=1e-18 Score=198.23 Aligned_cols=251 Identities=21% Similarity=0.128 Sum_probs=155.5
Q ss_pred CcceEEEecCccchhhhcccccccccCccceeeeCC--CCccc-chhhcccccCceEeccccccccccch-hhhcCCCCc
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKI-PKGIKKLIHLRYLALGWNPWIKELPE-ALCELCNLQ 367 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~ 367 (698)
+++++|+++++..... ....|.++++|++|+++ .+..+ |..++++++|++|+|++|. +..+|. .++++++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRL---PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCCCC---CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCS
T ss_pred CCCcEEECCCCCCCCc---CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCC
Confidence 7899999999865443 23458889999999998 55555 5668999999999999998 999987 599999999
Q ss_pred EeeccCCCCCcccc-hhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccCc
Q 005407 368 TLDVSGCDNLKRLP-ERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGS 446 (698)
Q Consensus 368 ~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~ 446 (698)
+|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++..+........ .+.. ..+..|+ .
T Consensus 101 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~-~~~~~L~-~ 175 (680)
T 1ziw_A 101 ELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE--ELDI-FANSSLK-K 175 (680)
T ss_dssp EEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH--HHGG-GTTCEES-E
T ss_pred EEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH--Hhhc-ccccccc-E
Confidence 99999987 56665 6799999999999999966666677789999999998876654432111 0110 1112233 3
Q ss_pred eeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhcc
Q 005407 447 LTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLS 526 (698)
Q Consensus 447 l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~ 526 (698)
+.+.... ........+..+.+|+.+.+..+..... ....+...+ ..++|+.|.+.++...... |.++..
T Consensus 176 L~L~~n~-------l~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~l-~~~~L~~L~L~~n~l~~~~--~~~~~~ 244 (680)
T 1ziw_A 176 LELSSNQ-------IKEFSPGCFHAIGRLFGLFLNNVQLGPS-LTEKLCLEL-ANTSIRNLSLSNSQLSTTS--NTTFLG 244 (680)
T ss_dssp EECTTCC-------CCCBCTTGGGGSSEECEEECTTCCCHHH-HHHHHHHHH-TTSCCCEEECTTSCCCEEC--TTTTGG
T ss_pred EECCCCc-------ccccChhhhhhhhhhhhhhccccccChh-hHHHHHHHh-hhccccEEEccCCcccccC--hhHhhc
Confidence 4433221 1111222344555566665544332100 001111111 1245666666555444332 444444
Q ss_pred ccC--ccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCc
Q 005407 527 LTK--LRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMT 562 (698)
Q Consensus 527 l~~--L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~ 562 (698)
++. |+.|++++|......+ .++.+++|++|+++++.
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 433 6666666664433332 35556666666666543
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=1.5e-18 Score=186.99 Aligned_cols=331 Identities=15% Similarity=0.145 Sum_probs=222.6
Q ss_pred CcceEEEecCccchhhhcccccccccCccceeeeCCC--Cc-cc-chhhcccccCceEecccccccccc-chhhhcCCCC
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGPP--VR-KI-PKGIKKLIHLRYLALGWNPWIKEL-PEALCELCNL 366 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~--~~-~l-p~~i~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L 366 (698)
+++++|+++++..... .+..|.++++|++|+++. +. .+ |..+..+++|++|+|++|. +..+ |..++++++|
T Consensus 30 ~~l~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL---NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANL 105 (455)
T ss_dssp TTCCEEECCSSCCCEE---CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTC
T ss_pred CccCEEEecCCccCcC---ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccC
Confidence 7899999999865443 245588999999999983 32 44 4568999999999999999 6665 7789999999
Q ss_pred cEeeccCCCCCcccchh--hhccccCCceecCCccCCCcCCcC-CCCCCCCCccCceeccCCCCcccccccccccccccc
Q 005407 367 QTLDVSGCDNLKRLPER--IGELINLRHLMNSRQDDSSYMPRG-MERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHL 443 (698)
Q Consensus 367 ~~L~l~~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L 443 (698)
++|++++|.....+|.. ++.+++|++|++++|......|.. ++++++|++|++..+........ .+..+.. ..+
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~-~~L 182 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE--DLLNFQG-KHF 182 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT--TSGGGTT-CEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh--hhhcccc-ccc
Confidence 99999999843445555 899999999999999655555655 78999999998876554432111 1222211 112
Q ss_pred cCceeEcccc--CcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCC----
Q 005407 444 EGSLTLRRLG--NERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTI---- 517 (698)
Q Consensus 444 ~~~l~i~~l~--~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---- 517 (698)
. .+.+.... ...... ........+...++|+.|+++.+..... ....+.. .....+|+.|.+.++.....
T Consensus 183 ~-~L~l~~n~l~~~~~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 183 T-LLRLSSITLQDMNEYW-LGWEKCGNPFKNTSITTLDLSGNGFKES-MAKRFFD-AIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp E-EEECTTCBCTTCSTTC-TTHHHHCCTTTTCEEEEEECTTSCCCHH-HHHHHHH-HTTTCCEEEEECTTCTTTSCCTTC
T ss_pred c-ccccccCcccccchhh-ccccccccccccceeeeEecCCCccccc-chhhhhc-cccccceeeEeeccccccccccch
Confidence 2 23322211 100000 0011112344567899999988764321 1111112 22346788888876532211
Q ss_pred ---CC-CCchhc--cccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCcceeeeCccccCCCccccccccccccccc
Q 005407 518 ---PP-TSNWML--SLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASS 590 (698)
Q Consensus 518 ---~~-~p~~~~--~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 590 (698)
.. .+..+. ..++|+.|++++|.....++ .++.+++|++|++++|. ++.++...
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~------------------- 318 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNA------------------- 318 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTT-------------------
T ss_pred hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhH-------------------
Confidence 00 011111 24789999999998776655 68899999999999876 66664432
Q ss_pred cccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCC-CccccCCCCcceEEEccCc
Q 005407 591 IIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKAL-PDYILGSTSLDKLLIYYSR 662 (698)
Q Consensus 591 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l-p~~~~~l~~L~~L~i~~C~ 662 (698)
...+++|+.|+++++ .+..++. .....+++|++|++++| .+..+ |..+..+++|++|++++|.
T Consensus 319 ---~~~l~~L~~L~Ls~N-~l~~~~~----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 319 ---FWGLTHLLKLNLSQN-FLGSIDS----RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp ---TTTCTTCCEEECCSS-CCCEECG----GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ---hcCcccCCEEECCCC-ccCCcCh----hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCc
Confidence 256899999999986 5555532 23457999999999997 57776 6677889999999999975
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=5.7e-19 Score=180.65 Aligned_cols=218 Identities=22% Similarity=0.290 Sum_probs=143.5
Q ss_pred CcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEe
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTL 369 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L 369 (698)
.+++.|++.++.... .+..+.++++|++|+++ .+..+|..++.+.+|++|+|++|. +..+|..++++++|++|
T Consensus 81 ~~l~~L~L~~n~l~~----lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLPQ----FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCSS----CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEE
T ss_pred cceeEEEccCCCchh----cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEE
Confidence 456677777665432 23335567777777776 566889899999999999999998 88999999999999999
Q ss_pred eccCCCCCcccchhhhc---------cccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCccccccccccccc
Q 005407 370 DVSGCDNLKRLPERIGE---------LINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKL 440 (698)
Q Consensus 370 ~l~~~~~l~~lp~~i~~---------l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L 440 (698)
++++|..+..+|..++. +++|++|++++| .+..+|..+++++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~---------------------------- 206 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQ---------------------------- 206 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCT----------------------------
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCC----------------------------
Confidence 99999888999987765 555555555554 2223333333222
Q ss_pred ccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCC
Q 005407 441 KHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPT 520 (698)
Q Consensus 441 ~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 520 (698)
+|+.|++.++....+
T Consensus 207 --------------------------------------------------------------~L~~L~L~~N~l~~l--- 221 (328)
T 4fcg_A 207 --------------------------------------------------------------NLKSLKIRNSPLSAL--- 221 (328)
T ss_dssp --------------------------------------------------------------TCCEEEEESSCCCCC---
T ss_pred --------------------------------------------------------------CCCEEEccCCCCCcC---
Confidence 344444444433333
Q ss_pred CchhccccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCc
Q 005407 521 SNWMLSLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPR 599 (698)
Q Consensus 521 p~~~~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (698)
|..+..+++|++|+|++|.....+| .++.+++|+.|+|++|..+..+|..+ ..+++
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~-----------------------~~l~~ 278 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI-----------------------HRLTQ 278 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG-----------------------GGCTT
T ss_pred chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh-----------------------hcCCC
Confidence 4556666666677776666655555 45666667777776666555554431 35666
Q ss_pred ccccccccccccccCcccccCCCcCCCCccceeeecc
Q 005407 600 LETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICW 636 (698)
Q Consensus 600 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 636 (698)
|+.|++++|+.+..+|. .+..+++|+.+.+..
T Consensus 279 L~~L~L~~n~~~~~iP~-----~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 279 LEKLDLRGCVNLSRLPS-----LIAQLPANCIILVPP 310 (328)
T ss_dssp CCEEECTTCTTCCCCCG-----GGGGSCTTCEEECCG
T ss_pred CCEEeCCCCCchhhccH-----HHhhccCceEEeCCH
Confidence 77777777666666665 444666666666554
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=1.2e-18 Score=179.00 Aligned_cols=288 Identities=18% Similarity=0.130 Sum_probs=145.1
Q ss_pred cceEEEecCccchhhhcccccccccCccceeeeCC--CCcccc-hhhcccccCceEecccccccccc-chhhhcCCCCcE
Q 005407 293 KLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIP-KGIKKLIHLRYLALGWNPWIKEL-PEALCELCNLQT 368 (698)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp-~~i~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~ 368 (698)
+++.+.++++..... +..+ .+.|++|+++ .+..++ ..++.+++|++|++++|. +..+ |..++++++|++
T Consensus 34 ~l~~l~~~~~~l~~i----p~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV----PKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCCSSC----CSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCE
T ss_pred cCCEEECCCCCcccc----CCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCE
Confidence 566676666543221 1111 2456666666 455553 356777777777777776 5555 556777777777
Q ss_pred eeccCCCCCcccchhhhccccCCceecCCccCCCcCCc-CCCCCCCCCccCceeccCCCCcccccccccccccccccCce
Q 005407 369 LDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPR-GMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSL 447 (698)
Q Consensus 369 L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l 447 (698)
|++++|. +..+|..+. ++|++|++++| .+..+|. .++.+++|++|++..+......
T Consensus 107 L~L~~n~-l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------------- 163 (332)
T 2ft3_A 107 LYISKNH-LVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSG------------------- 163 (332)
T ss_dssp EECCSSC-CCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGG-------------------
T ss_pred EECCCCc-CCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCC-------------------
Confidence 7777765 666666554 67777777766 3344443 3566666666655433322100
Q ss_pred eEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccc
Q 005407 448 TLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSL 527 (698)
Q Consensus 448 ~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l 527 (698)
.....+..+ +|+.|+++.+.... ++..+ +++|+.|++.++....+. +.++..+
T Consensus 164 ----------------~~~~~~~~l-~L~~L~l~~n~l~~------l~~~~--~~~L~~L~l~~n~i~~~~--~~~l~~l 216 (332)
T 2ft3_A 164 ----------------FEPGAFDGL-KLNYLRISEAKLTG------IPKDL--PETLNELHLDHNKIQAIE--LEDLLRY 216 (332)
T ss_dssp ----------------SCTTSSCSC-CCSCCBCCSSBCSS------CCSSS--CSSCSCCBCCSSCCCCCC--TTSSTTC
T ss_pred ----------------CCcccccCC-ccCEEECcCCCCCc------cCccc--cCCCCEEECCCCcCCccC--HHHhcCC
Confidence 000111111 34444444433211 11111 145555555555444442 3445556
Q ss_pred cCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCcccccccc
Q 005407 528 TKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFL 606 (698)
Q Consensus 528 ~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 606 (698)
++|+.|++++|......+ .++.+++|+.|++++|. ++.+|.. ...+++|+.|+++
T Consensus 217 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~-----------------------l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAG-----------------------LPDLKLLQVVYLH 272 (332)
T ss_dssp TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTT-----------------------GGGCTTCCEEECC
T ss_pred CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChh-----------------------hhcCccCCEEECC
Confidence 666666666664443333 35556666666666543 4444332 1345666666666
Q ss_pred cccccccCcccccCC--CcCCCCccceeeeccCCCC--CCCCccccCCCCcceEEEccCc
Q 005407 607 LMTNWEEWDDCEIAG--GKTIMPRLRHLSICWSPEL--KALPDYILGSTSLDKLLIYYSR 662 (698)
Q Consensus 607 ~~~~l~~~~~~~~~~--~~~~~~~L~~L~l~~c~~L--~~lp~~~~~l~~L~~L~i~~C~ 662 (698)
+ +.++.++.....+ ....+++|+.|.+.+++-. ...|..+..+++|+.++++++.
T Consensus 273 ~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 273 T-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp S-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred C-CCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5 2344443210000 0012566777777776532 2234445567777777777664
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=2.5e-18 Score=176.66 Aligned_cols=92 Identities=26% Similarity=0.401 Sum_probs=43.8
Q ss_pred ceeeeCC--CCcccchhhcccccCceEeccccccccccch-hhhcCCCCcEeeccCCCCCccc-chhhhccccCCceecC
Q 005407 321 LRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPE-ALCELCNLQTLDVSGCDNLKRL-PERIGELINLRHLMNS 396 (698)
Q Consensus 321 L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l-p~~i~~l~~L~~L~l~ 396 (698)
++++++. .+..+|..+. ++|++|++++|. +..+|. .++++++|++|++++|. +..+ |..++.+++|++|+++
T Consensus 33 l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp TTEEECTTSCCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECC
T ss_pred CeEEEecCCCccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECC
Confidence 3444444 3444444332 345555555555 444443 35555555555555554 3332 4455555555555555
Q ss_pred CccCCCcCCcCCCCCCCCCccCc
Q 005407 397 RQDDSSYMPRGMERLTSLRTLGS 419 (698)
Q Consensus 397 ~~~~~~~~p~~i~~L~~L~~L~~ 419 (698)
+| .+..+|..+. ++|++|++
T Consensus 109 ~n-~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 109 KN-QLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp SS-CCSBCCSSCC--TTCCEEEC
T ss_pred CC-cCCccChhhc--ccccEEEC
Confidence 54 3344444433 34444443
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=7.8e-18 Score=173.01 Aligned_cols=292 Identities=17% Similarity=0.137 Sum_probs=199.0
Q ss_pred cceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCccc-chhhcccccCce
Q 005407 268 KARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKI-PKGIKKLIHLRY 344 (698)
Q Consensus 268 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~l-p~~i~~l~~L~~ 344 (698)
..+.+.+.+.... ..|..+ .++++.|+++++..... .+..|.++++|++|+++ .+..+ |..++.+++|++
T Consensus 34 ~l~~l~~~~~~l~--~ip~~~--~~~l~~L~l~~n~i~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGLK--AVPKEI--SPDTTLLDLQNNDISEL---RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCCS--SCCSCC--CTTCCEEECCSSCCCEE---CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred cCCEEECCCCCcc--ccCCCC--CCCCeEEECCCCcCCcc---CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 3556666555542 234433 36899999999865432 23458899999999998 56666 677999999999
Q ss_pred EeccccccccccchhhhcCCCCcEeeccCCCCCcccchh-hhccccCCceecCCccCC--CcCCcCCCCCCCCCccCcee
Q 005407 345 LALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPER-IGELINLRHLMNSRQDDS--SYMPRGMERLTSLRTLGSFV 421 (698)
Q Consensus 345 L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~--~~~p~~i~~L~~L~~L~~~~ 421 (698)
|++++|. +..+|..+. ++|++|++++|. +..+|.. ++.+++|++|++++|... ...|..++.+ +|+.|++..
T Consensus 107 L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 107 LYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp EECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred EECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 9999998 999998765 899999999987 6777654 799999999999998542 2455666666 777776543
Q ss_pred ccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCC
Q 005407 422 ASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPP 501 (698)
Q Consensus 422 ~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 501 (698)
+.....+.. + .++|+.|+++.+.... .....+..+
T Consensus 182 n~l~~l~~~--------------------------------------~--~~~L~~L~l~~n~i~~-----~~~~~l~~l 216 (332)
T 2ft3_A 182 AKLTGIPKD--------------------------------------L--PETLNELHLDHNKIQA-----IELEDLLRY 216 (332)
T ss_dssp SBCSSCCSS--------------------------------------S--CSSCSCCBCCSSCCCC-----CCTTSSTTC
T ss_pred CCCCccCcc--------------------------------------c--cCCCCEEECCCCcCCc-----cCHHHhcCC
Confidence 322211100 0 1345666666554321 112455667
Q ss_pred CCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceeeeCccccCCCcccccc
Q 005407 502 RSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQAR 581 (698)
Q Consensus 502 ~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~ 581 (698)
++|+.|++.++....+. +.++..+++|+.|++++|........++.+++|+.|+++++. ++.++...+....
T Consensus 217 ~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~----- 288 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIE--NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVG----- 288 (332)
T ss_dssp TTCSCCBCCSSCCCCCC--TTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSS-----
T ss_pred CCCCEEECCCCcCCcCC--hhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHccccc-----
Confidence 78888888887776663 557888999999999999765433468889999999999865 7777665443210
Q ss_pred ccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCC
Q 005407 582 GDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSP 638 (698)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 638 (698)
....+++|+.|.+.+++- ..+.. .......+++|+.|.++++.
T Consensus 289 -----------~~~~~~~l~~L~l~~N~~-~~~~~--~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 -----------FGVKRAYYNGISLFNNPV-PYWEV--QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -----------CCSSSCCBSEEECCSSSS-CGGGS--CGGGGTTBCCSTTEEC----
T ss_pred -----------cccccccccceEeecCcc-ccccc--Ccccccccchhhhhhccccc
Confidence 013478899999998653 31111 11245578889999998864
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.76 E-value=8e-18 Score=172.83 Aligned_cols=97 Identities=24% Similarity=0.258 Sum_probs=48.1
Q ss_pred cceeeeCC--CCcccch-hhcccccCceEecccccccccc-chhhhcCCCCcEeeccCCCCCcccchhhhccccCCceec
Q 005407 320 CLRSIDGP--PVRKIPK-GIKKLIHLRYLALGWNPWIKEL-PEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMN 395 (698)
Q Consensus 320 ~L~~L~l~--~~~~lp~-~i~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l 395 (698)
.+++|+++ .+..++. .++.+++|++|++++|. +..+ |..++++++|++|++++|. +..+|..+. ++|++|++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEEC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEEC
Confidence 34444444 3444443 35555556666665555 4444 4455555566666665554 455555443 45555555
Q ss_pred CCccCCCcCCcCCCCCCCCCccCce
Q 005407 396 SRQDDSSYMPRGMERLTSLRTLGSF 420 (698)
Q Consensus 396 ~~~~~~~~~p~~i~~L~~L~~L~~~ 420 (698)
++|......+..++++++|+.|++.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred CCCcccccCHhHhcCCccccEEECC
Confidence 5552222222234455555555443
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=1.4e-17 Score=187.55 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=103.8
Q ss_pred CCcceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchh-hcccccC
Q 005407 266 CWKARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKG-IKKLIHL 342 (698)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~-i~~l~~L 342 (698)
+..++.+.+.++..... .+..+.++++|++|+++++..... .+..|.++++|++|+++ .+..+|.. |.++.+|
T Consensus 51 p~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i---~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEE---CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred CcCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCc---ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 45788898888776432 345688899999999999865432 23568899999999998 68888864 7899999
Q ss_pred ceEeccccccccccch-hhhcCCCCcEeeccCCCCCc--ccchhhhccccCCceecCCcc
Q 005407 343 RYLALGWNPWIKELPE-ALCELCNLQTLDVSGCDNLK--RLPERIGELINLRHLMNSRQD 399 (698)
Q Consensus 343 ~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~--~lp~~i~~l~~L~~L~l~~~~ 399 (698)
++|+|++|. +..+|. .++++++|++|++++|. +. .+|..++.+++|++|++++|.
T Consensus 127 ~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 127 QKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CEEECCCCc-CCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCcc
Confidence 999999998 888876 48999999999999987 44 457888999999999998874
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=5.6e-18 Score=172.21 Aligned_cols=250 Identities=18% Similarity=0.161 Sum_probs=146.6
Q ss_pred cceEEEecCccchhhhcccccccccCccceeeeCC---CC-cccchhhcccccCceEecccccccc-ccchhhhcCCCCc
Q 005407 293 KLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP---PV-RKIPKGIKKLIHLRYLALGWNPWIK-ELPEALCELCNLQ 367 (698)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~---~~-~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~~~~l~~L~ 367 (698)
+++.|+++++...... ..+..+.++++|++|+++ .+ ..+|..++.+++|++|++++|. +. .+|..++++++|+
T Consensus 51 ~l~~L~L~~~~l~~~~-~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPY-PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCE-ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCCc-ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCHHHhCCCCCC
Confidence 4555555554332200 122334555555555543 12 2455556666666666666666 43 5566666666666
Q ss_pred EeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCC-CCCccCceeccCCCCcccccccccccccccccCc
Q 005407 368 TLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLT-SLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGS 446 (698)
Q Consensus 368 ~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~-~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~ 446 (698)
+|++++|.....+|..++.+++|++|++++|.....+|..++.++ +|+.|++..+..... ....+..+. |+ .
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-----~~~~~~~l~-L~-~ 201 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-----IPPTFANLN-LA-F 201 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-----CCGGGGGCC-CS-E
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc-----CChHHhCCc-cc-E
Confidence 666666553335566666666666666666643335566666665 666665543332210 001111111 22 3
Q ss_pred eeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhcc
Q 005407 447 LTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLS 526 (698)
Q Consensus 447 l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~ 526 (698)
+.+.... ........+..+++|+.|+++.+.... ....+..+++|+.|++.++..... +|.++..
T Consensus 202 L~Ls~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~ 266 (313)
T 1ogq_A 202 VDLSRNM-------LEGDASVLFGSDKNTQKIHLAKNSLAF------DLGKVGLSKNLNGLDLRNNRIYGT--LPQGLTQ 266 (313)
T ss_dssp EECCSSE-------EEECCGGGCCTTSCCSEEECCSSEECC------BGGGCCCCTTCCEEECCSSCCEEC--CCGGGGG
T ss_pred EECcCCc-------ccCcCCHHHhcCCCCCEEECCCCceee------ecCcccccCCCCEEECcCCcccCc--CChHHhc
Confidence 3332211 111123345667888888888776432 122356678999999998877632 2889999
Q ss_pred ccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceee
Q 005407 527 LTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKR 566 (698)
Q Consensus 527 l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~ 566 (698)
+++|+.|+|++|.....+|..+.+++|+.|++.+++.+..
T Consensus 267 l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 267 LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred CcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 9999999999998777888889999999999999875543
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=4.2e-18 Score=173.10 Aligned_cols=253 Identities=17% Similarity=0.122 Sum_probs=161.8
Q ss_pred ccceeeeCC--CCc---ccchhhcccccCceEeccc-cccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCc
Q 005407 319 TCLRSIDGP--PVR---KIPKGIKKLIHLRYLALGW-NPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRH 392 (698)
Q Consensus 319 ~~L~~L~l~--~~~---~lp~~i~~l~~L~~L~L~~-~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~ 392 (698)
.+++.|+++ .+. .+|..++.+++|++|++++ |.....+|..++++++|++|++++|.....+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 356677766 444 6899999999999999995 7644589999999999999999998844589999999999999
Q ss_pred eecCCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhccccccc
Q 005407 393 LMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSK 472 (698)
Q Consensus 393 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~ 472 (698)
|++++|.....+|..++.+++|++|++..+..... .-..+..+.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----~p~~l~~l~------------------------------- 173 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-----IPDSYGSFS------------------------------- 173 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE-----CCGGGGCCC-------------------------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc-----CCHHHhhhh-------------------------------
Confidence 99999966668898899999999997764433210 001111111
Q ss_pred ccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCC
Q 005407 473 MRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPC 552 (698)
Q Consensus 473 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~ 552 (698)
++|+.|+++.+.... ..+..+..+. |+.|++.++...... |..+..+++|+.|+|++|.....++.+..+++
T Consensus 174 ~~L~~L~L~~N~l~~-----~~~~~~~~l~-L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 245 (313)
T 1ogq_A 174 KLFTSMTISRNRLTG-----KIPPTFANLN-LAFVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245 (313)
T ss_dssp TTCCEEECCSSEEEE-----ECCGGGGGCC-CSEEECCSSEEEECC--GGGCCTTSCCSEEECCSSEECCBGGGCCCCTT
T ss_pred hcCcEEECcCCeeec-----cCChHHhCCc-ccEEECcCCcccCcC--CHHHhcCCCCCEEECCCCceeeecCcccccCC
Confidence 134444444333110 1112222233 666666555444332 55566677777777777765555555666677
Q ss_pred cceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCcccee
Q 005407 553 LETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHL 632 (698)
Q Consensus 553 L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 632 (698)
|++|++++|.-...+|.. ...+++|+.|+++++.--..+|. . ..+++|+.|
T Consensus 246 L~~L~Ls~N~l~~~~p~~-----------------------l~~l~~L~~L~Ls~N~l~~~ip~-----~-~~l~~L~~l 296 (313)
T 1ogq_A 246 LNGLDLRNNRIYGTLPQG-----------------------LTQLKFLHSLNVSFNNLCGEIPQ-----G-GNLQRFDVS 296 (313)
T ss_dssp CCEEECCSSCCEECCCGG-----------------------GGGCTTCCEEECCSSEEEEECCC-----S-TTGGGSCGG
T ss_pred CCEEECcCCcccCcCChH-----------------------HhcCcCCCEEECcCCcccccCCC-----C-ccccccChH
Confidence 777777765422233322 13566777777776544346666 1 256777777
Q ss_pred eeccCCCCCCCC
Q 005407 633 SICWSPELKALP 644 (698)
Q Consensus 633 ~l~~c~~L~~lp 644 (698)
++.+++.+...|
T Consensus 297 ~l~~N~~lc~~p 308 (313)
T 1ogq_A 297 AYANNKCLCGSP 308 (313)
T ss_dssp GTCSSSEEESTT
T ss_pred HhcCCCCccCCC
Confidence 777766555443
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=5.5e-18 Score=175.81 Aligned_cols=97 Identities=23% Similarity=0.278 Sum_probs=57.8
Q ss_pred cceeeeCC--CCcccch-hhcccccCceEeccccccccccc-hhhhcCCCCcEeeccCCCCCcccchh-hhccccCCcee
Q 005407 320 CLRSIDGP--PVRKIPK-GIKKLIHLRYLALGWNPWIKELP-EALCELCNLQTLDVSGCDNLKRLPER-IGELINLRHLM 394 (698)
Q Consensus 320 ~L~~L~l~--~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~ 394 (698)
.|+.|+++ .+..+|. .+..+++|++|++++|. +..++ ..++++++|++|++++|. +..+|.. ++.+++|++|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEE
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEE
Confidence 55666665 4555554 46666667777776666 55553 346666667777776665 5555554 56666677776
Q ss_pred cCCccCCCcCCc--CCCCCCCCCccCc
Q 005407 395 NSRQDDSSYMPR--GMERLTSLRTLGS 419 (698)
Q Consensus 395 l~~~~~~~~~p~--~i~~L~~L~~L~~ 419 (698)
+++| .+..+|. .++.+++|++|++
T Consensus 131 L~~n-~l~~l~~~~~~~~l~~L~~L~l 156 (353)
T 2z80_A 131 LLGN-PYKTLGETSLFSHLTKLQILRV 156 (353)
T ss_dssp CTTC-CCSSSCSSCSCTTCTTCCEEEE
T ss_pred CCCC-CCcccCchhhhccCCCCcEEEC
Confidence 6666 3444444 4555555555544
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.72 E-value=7e-17 Score=172.52 Aligned_cols=92 Identities=21% Similarity=0.203 Sum_probs=51.7
Q ss_pred cceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCC
Q 005407 320 CLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSR 397 (698)
Q Consensus 320 ~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~ 397 (698)
.|+.|+++ .+..+|+. +.+|++|++++|. +..+|.. .++|++|++++|. +..+| .++.+++|++|++++
T Consensus 92 ~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 92 HLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCS
T ss_pred CCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCC
Confidence 45555554 34444432 2456666666655 5555431 1567777777765 55666 477777777777776
Q ss_pred ccCCCcCCcCCCCCCCCCccCceeccC
Q 005407 398 QDDSSYMPRGMERLTSLRTLGSFVASR 424 (698)
Q Consensus 398 ~~~~~~~p~~i~~L~~L~~L~~~~~~~ 424 (698)
| .+..+|..+ .+|++|++..+..
T Consensus 163 N-~l~~lp~~~---~~L~~L~L~~n~l 185 (454)
T 1jl5_A 163 N-SLKKLPDLP---PSLEFIAAGNNQL 185 (454)
T ss_dssp S-CCSCCCCCC---TTCCEEECCSSCC
T ss_pred C-cCcccCCCc---ccccEEECcCCcC
Confidence 6 444555443 3566665554433
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=2.6e-16 Score=168.17 Aligned_cols=73 Identities=19% Similarity=0.345 Sum_probs=39.6
Q ss_pred ccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecC
Q 005407 319 TCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNS 396 (698)
Q Consensus 319 ~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~ 396 (698)
+.|++|+++ .+..+| +++.+.+|++|++++|. +..+|..+ .+|++|++++|. +..+| .++.+++|++|+++
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECC
Confidence 345555555 444455 35556666666666555 55555422 355666666554 44455 35556666666665
Q ss_pred Cc
Q 005407 397 RQ 398 (698)
Q Consensus 397 ~~ 398 (698)
+|
T Consensus 204 ~N 205 (454)
T 1jl5_A 204 NN 205 (454)
T ss_dssp SS
T ss_pred CC
Confidence 55
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=2.8e-16 Score=173.12 Aligned_cols=234 Identities=18% Similarity=0.152 Sum_probs=144.2
Q ss_pred ccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecC
Q 005407 319 TCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNS 396 (698)
Q Consensus 319 ~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~ 396 (698)
++|+.|+++ .+..+|. .+++|++|+|++|. ++.+|. .+++|++|++++|. +..+|. .+.+|+.|+++
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECC
Confidence 344444444 4444554 34555555555555 555554 44555555555554 455554 34555555555
Q ss_pred CccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhccccccccccc
Q 005407 397 RQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLV 476 (698)
Q Consensus 397 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~ 476 (698)
+| .+..+|..+ ++|++|++..+.....+ ....+|+
T Consensus 130 ~N-~l~~lp~~l---~~L~~L~Ls~N~l~~l~-----------------------------------------~~~~~L~ 164 (622)
T 3g06_A 130 GN-QLTSLPVLP---PGLQELSVSDNQLASLP-----------------------------------------ALPSELC 164 (622)
T ss_dssp SS-CCSCCCCCC---TTCCEEECCSSCCSCCC-----------------------------------------CCCTTCC
T ss_pred CC-CCCcCCCCC---CCCCEEECcCCcCCCcC-----------------------------------------CccCCCC
Confidence 55 344444322 44444433222111000 0123566
Q ss_pred ceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCccee
Q 005407 477 ELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETL 556 (698)
Q Consensus 477 ~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L 556 (698)
.|.++.+.+.. ++ ..+++|+.|++.++....+ |.. +++|+.|++++|... .+|. .+++|+.|
T Consensus 165 ~L~L~~N~l~~------l~---~~~~~L~~L~Ls~N~l~~l---~~~---~~~L~~L~L~~N~l~-~l~~--~~~~L~~L 226 (622)
T 3g06_A 165 KLWAYNNQLTS------LP---MLPSGLQELSVSDNQLASL---PTL---PSELYKLWAYNNRLT-SLPA--LPSGLKEL 226 (622)
T ss_dssp EEECCSSCCSC------CC---CCCTTCCEEECCSSCCSCC---CCC---CTTCCEEECCSSCCS-SCCC--CCTTCCEE
T ss_pred EEECCCCCCCC------Cc---ccCCCCcEEECCCCCCCCC---CCc---cchhhEEECcCCccc-ccCC--CCCCCCEE
Confidence 66666655322 11 3457888888888777666 432 478899999888544 4553 35889999
Q ss_pred eccCCcceeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeecc
Q 005407 557 TLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICW 636 (698)
Q Consensus 557 ~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 636 (698)
++++|. ++.++ ..+++|+.|+++++ .++.++. .+++|+.|++++
T Consensus 227 ~Ls~N~-L~~lp--------------------------~~l~~L~~L~Ls~N-~L~~lp~--------~~~~L~~L~Ls~ 270 (622)
T 3g06_A 227 IVSGNR-LTSLP--------------------------VLPSELKELMVSGN-RLTSLPM--------LPSGLLSLSVYR 270 (622)
T ss_dssp ECCSSC-CSCCC--------------------------CCCTTCCEEECCSS-CCSCCCC--------CCTTCCEEECCS
T ss_pred EccCCc-cCcCC--------------------------CCCCcCcEEECCCC-CCCcCCc--------ccccCcEEeCCC
Confidence 998863 55554 24688999999985 6777664 678999999999
Q ss_pred CCCCCCCCccccCCCCcceEEEccCcc
Q 005407 637 SPELKALPDYILGSTSLDKLLIYYSRH 663 (698)
Q Consensus 637 c~~L~~lp~~~~~l~~L~~L~i~~C~~ 663 (698)
| +++.+|..+.++++|+.|++++++-
T Consensus 271 N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 271 N-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp S-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred C-CCCcCCHHHhhccccCEEEecCCCC
Confidence 6 7889998888899999999999873
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=1.3e-16 Score=161.79 Aligned_cols=86 Identities=23% Similarity=0.226 Sum_probs=50.0
Q ss_pred CCcccchhhcccccCceEeccccccccccchh-hhcCCCCcEeeccCCCCCccc---chhhhccccCCceecCCccCCCc
Q 005407 328 PVRKIPKGIKKLIHLRYLALGWNPWIKELPEA-LCELCNLQTLDVSGCDNLKRL---PERIGELINLRHLMNSRQDDSSY 403 (698)
Q Consensus 328 ~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~l---p~~i~~l~~L~~L~l~~~~~~~~ 403 (698)
.+..+|..+. .+|++|++++|. +..+|.. +.++++|++|++++|. +..+ |..+..+++|++|++++| .+..
T Consensus 18 ~l~~ip~~~~--~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~ 92 (306)
T 2z66_A 18 GLTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVIT 92 (306)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEE
T ss_pred CcccCCCCCC--CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-cccc
Confidence 4555555432 466667776666 6666654 4666677777776665 4333 455566666777776666 3344
Q ss_pred CCcCCCCCCCCCccC
Q 005407 404 MPRGMERLTSLRTLG 418 (698)
Q Consensus 404 ~p~~i~~L~~L~~L~ 418 (698)
+|..+..+++|++|+
T Consensus 93 l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 93 MSSNFLGLEQLEHLD 107 (306)
T ss_dssp EEEEEETCTTCCEEE
T ss_pred ChhhcCCCCCCCEEE
Confidence 554455555555553
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.68 E-value=3.7e-16 Score=175.89 Aligned_cols=128 Identities=26% Similarity=0.263 Sum_probs=105.9
Q ss_pred CcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccch-hhcccccCceEeccccccccccch-hhhcCCCCc
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPK-GIKKLIHLRYLALGWNPWIKELPE-ALCELCNLQ 367 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~ 367 (698)
++++.|+++++..... .+..|.++++|++|+++ .+..+|+ .|.++++|++|+|++|. +..+|. .+.++++|+
T Consensus 52 ~~~~~LdLs~N~i~~l---~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL---GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCC
T ss_pred cCCCEEEeeCCCCCCC---CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCC
Confidence 4799999999875443 23568999999999999 6788876 48999999999999999 999986 479999999
Q ss_pred EeeccCCCCCcccch-hhhccccCCceecCCccCCC-cCCcCCCCCCCCCccCceeccC
Q 005407 368 TLDVSGCDNLKRLPE-RIGELINLRHLMNSRQDDSS-YMPRGMERLTSLRTLGSFVASR 424 (698)
Q Consensus 368 ~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~ 424 (698)
+|++++|. +..+|. .++++++|++|++++|.... ..|..++.+++|++|++..+..
T Consensus 128 ~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 128 KLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp EEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred EEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 99999987 777776 48999999999999985322 4577788899999888765543
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=1.1e-15 Score=163.52 Aligned_cols=93 Identities=23% Similarity=0.297 Sum_probs=64.4
Q ss_pred eeeCC--CCcccchhhcccccCceEeccccccccccc-hhhhcCCCCcEeeccCCCCCcccc-hhhhccccCCceecCCc
Q 005407 323 SIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELP-EALCELCNLQTLDVSGCDNLKRLP-ERIGELINLRHLMNSRQ 398 (698)
Q Consensus 323 ~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~ 398 (698)
.+++. .+..+|.++. .++++|+|++|. +..++ ..+.++++|++|+|++|. +..++ ..+.++++|++|++++|
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC
Confidence 34444 5667776654 578888888887 76665 567888888888888876 55544 56778888888888877
Q ss_pred cCCCcCCc-CCCCCCCCCccCce
Q 005407 399 DDSSYMPR-GMERLTSLRTLGSF 420 (698)
Q Consensus 399 ~~~~~~p~-~i~~L~~L~~L~~~ 420 (698)
.+..+|. .+..+++|++|++.
T Consensus 123 -~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 123 -RLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp -CCSSCCTTTSCSCSSCCEEECC
T ss_pred -cCCeeCHhHhhccccCceeeCC
Confidence 4555554 46677777777554
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=1.1e-15 Score=164.03 Aligned_cols=93 Identities=24% Similarity=0.337 Sum_probs=62.6
Q ss_pred eeeCC--CCcccchhhcccccCceEecccccccccc-chhhhcCCCCcEeeccCCCCCccc-chhhhccccCCceecCCc
Q 005407 323 SIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKEL-PEALCELCNLQTLDVSGCDNLKRL-PERIGELINLRHLMNSRQ 398 (698)
Q Consensus 323 ~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~l-p~~i~~l~~L~~L~l~~~ 398 (698)
.+++. .+..+|..+. .+|++|+|++|. +..+ |..+.++++|++|+|++|. +..+ |..+.++++|++|++++|
T Consensus 58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEECCCCcCccCCCCC--CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCC
Confidence 34444 5566776554 578888888887 6665 4567888888888888876 4444 356778888888888877
Q ss_pred cCCCcCCcC-CCCCCCCCccCce
Q 005407 399 DDSSYMPRG-MERLTSLRTLGSF 420 (698)
Q Consensus 399 ~~~~~~p~~-i~~L~~L~~L~~~ 420 (698)
.+..+|.. ++.+++|++|++.
T Consensus 134 -~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 134 -WLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp -CCSBCCTTTSSSCTTCCEEECC
T ss_pred -cCCccChhhhcccCCCCEEECC
Confidence 34455543 6667777777554
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.64 E-value=1.5e-15 Score=162.91 Aligned_cols=220 Identities=20% Similarity=0.191 Sum_probs=138.1
Q ss_pred CcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccc-hhhcccccCceEeccccccccccchh-hhcCCCCc
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIP-KGIKKLIHLRYLALGWNPWIKELPEA-LCELCNLQ 367 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~ 367 (698)
++++.|+++++..... .+..|.++++|+.|+++ .+..++ ..+..+.+|++|+|++|. +..+|.. +..+++|+
T Consensus 75 ~~l~~L~L~~n~i~~~---~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMI---QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCCCEE---CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCC
T ss_pred CCccEEECcCCcCceE---CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCC
Confidence 5788888887754432 23446777788888777 455554 457778888888888887 7777654 67788888
Q ss_pred EeeccCCCCCcccch-hhhccccCCceecCCccCCCcCCc-CCCCCCCCCccCceeccCCCCcccccccccccccccccC
Q 005407 368 TLDVSGCDNLKRLPE-RIGELINLRHLMNSRQDDSSYMPR-GMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEG 445 (698)
Q Consensus 368 ~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~ 445 (698)
+|++++|. +..+|. .+..+++|+.|++++|..+..++. .+..+++|+.|++..+.... ++
T Consensus 151 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~----------~~------- 212 (452)
T 3zyi_A 151 ELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD----------MP------- 212 (452)
T ss_dssp EEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS----------CC-------
T ss_pred EEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc----------cc-------
Confidence 88888876 556554 567788888888877766666664 35666666666543221111 00
Q ss_pred ceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhc
Q 005407 446 SLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWML 525 (698)
Q Consensus 446 ~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~ 525 (698)
.+..+++|+.|+++.+.+.. ..+..+..+++|+.|++.++....+. |..+.
T Consensus 213 ----------------------~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~ 263 (452)
T 3zyi_A 213 ----------------------NLTPLVGLEELEMSGNHFPE-----IRPGSFHGLSSLKKLWVMNSQVSLIE--RNAFD 263 (452)
T ss_dssp ----------------------CCTTCTTCCEEECTTSCCSE-----ECGGGGTTCTTCCEEECTTSCCCEEC--TTTTT
T ss_pred ----------------------cccccccccEEECcCCcCcc-----cCcccccCccCCCEEEeCCCcCceEC--HHHhc
Confidence 12233455556555554321 11334555667777777666655543 55666
Q ss_pred cccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCc
Q 005407 526 SLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMT 562 (698)
Q Consensus 526 ~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~ 562 (698)
.+++|+.|+|++|......+ .+..+++|+.|+|++++
T Consensus 264 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 77777777777775443332 35667777777777654
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.64 E-value=2e-15 Score=161.46 Aligned_cols=220 Identities=22% Similarity=0.237 Sum_probs=138.3
Q ss_pred CcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccc-hhhcccccCceEeccccccccccch-hhhcCCCCc
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIP-KGIKKLIHLRYLALGWNPWIKELPE-ALCELCNLQ 367 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~ 367 (698)
++++.|+++++...... ...|.++++|+.|+++ .+..++ ..+..+.+|++|+|++|. +..+|. .+..+++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~---~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIK---VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCCCCEEC---TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCC
T ss_pred CCCcEEEccCCcCCeeC---HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCc
Confidence 56788888877644322 2446777788888877 455554 457778888888888887 777765 477788888
Q ss_pred EeeccCCCCCcccch-hhhccccCCceecCCccCCCcCCc-CCCCCCCCCccCceeccCCCCcccccccccccccccccC
Q 005407 368 TLDVSGCDNLKRLPE-RIGELINLRHLMNSRQDDSSYMPR-GMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEG 445 (698)
Q Consensus 368 ~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~ 445 (698)
+|++++|. +..+|. .+..+++|++|++++|..+..++. .+..+++|+.|++..+... .++
T Consensus 140 ~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~----------~~~------- 201 (440)
T 3zyj_A 140 ELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR----------EIP------- 201 (440)
T ss_dssp EEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----------SCC-------
T ss_pred eeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----------ccc-------
Confidence 88888876 555554 567788888888887766666664 3566777776654322211 110
Q ss_pred ceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhc
Q 005407 446 SLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWML 525 (698)
Q Consensus 446 ~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~ 525 (698)
.+..+++|+.|+++.+.+.. .....+..+++|+.|++.++....+. +..+.
T Consensus 202 ----------------------~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~ 252 (440)
T 3zyj_A 202 ----------------------NLTPLIKLDELDLSGNHLSA-----IRPGSFQGLMHLQKLWMIQSQIQVIE--RNAFD 252 (440)
T ss_dssp ----------------------CCTTCSSCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTCCCCEEC--TTSST
T ss_pred ----------------------ccCCCcccCEEECCCCccCc-----cChhhhccCccCCEEECCCCceeEEC--hhhhc
Confidence 12233445555555554221 11234555667777777666655553 45566
Q ss_pred cccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCc
Q 005407 526 SLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMT 562 (698)
Q Consensus 526 ~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~ 562 (698)
.+++|+.|+|++|......+ .+..+++|+.|+|++++
T Consensus 253 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 77777777777775443333 35667777777777654
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.64 E-value=8.1e-16 Score=156.03 Aligned_cols=223 Identities=19% Similarity=0.135 Sum_probs=155.9
Q ss_pred CcceEEEecCccchhhhcccccccccCccceeeeCC--CCccc---chhhcccccCceEeccccccccccchhhhcCCCC
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKI---PKGIKKLIHLRYLALGWNPWIKELPEALCELCNL 366 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~l---p~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L 366 (698)
++++.|+++++..... ....|.+++.|+.|+++ .+..+ |..+..+.+|++|++++|. +..+|..+..+++|
T Consensus 28 ~~l~~L~L~~n~l~~i---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKLQSL---PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred CCCCEEECCCCccCcc---CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCC
Confidence 5788888888764422 23446778888888887 34433 5667778888888888888 88888888888888
Q ss_pred cEeeccCCCCCcccch--hhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCccccccccccccccccc
Q 005407 367 QTLDVSGCDNLKRLPE--RIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLE 444 (698)
Q Consensus 367 ~~L~l~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ 444 (698)
++|++++|. +..+|. .+..+++|++|++++|......|..++.+++|++|++..+....
T Consensus 104 ~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------ 164 (306)
T 2z66_A 104 EHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE------------------ 164 (306)
T ss_dssp CEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG------------------
T ss_pred CEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc------------------
Confidence 888888876 666653 67888888888888885544555667777777777553221110
Q ss_pred CceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchh
Q 005407 445 GSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWM 524 (698)
Q Consensus 445 ~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~ 524 (698)
......+..+++|+.|+++.+.... ..+..+..+++|+.|++.++....++ +..+
T Consensus 165 ------------------~~~~~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~ 219 (306)
T 2z66_A 165 ------------------NFLPDIFTELRNLTFLDLSQCQLEQ-----LSPTAFNSLSSLQVLNMSHNNFFSLD--TFPY 219 (306)
T ss_dssp ------------------GEECSCCTTCTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTSCCSBCC--SGGG
T ss_pred ------------------ccchhHHhhCcCCCEEECCCCCcCC-----cCHHHhcCCCCCCEEECCCCccCccC--hhhc
Confidence 0011223445567777776665321 12345667788999999888777663 4467
Q ss_pred ccccCccEEEEcCCCCCCcCC-CCCCCC-CcceeeccCCc
Q 005407 525 LSLTKLRVLTLRHCFLCECLP-CLGKLP-CLETLTLEGMT 562 (698)
Q Consensus 525 ~~l~~L~~L~L~~c~~~~~l~-~l~~L~-~L~~L~L~~c~ 562 (698)
..+++|+.|++++|......+ .+..++ +|+.|+|++++
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 789999999999998766555 677785 89999999875
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.63 E-value=9.6e-16 Score=158.83 Aligned_cols=250 Identities=17% Similarity=0.132 Sum_probs=165.9
Q ss_pred CcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccc-hhhcccccCceEeccccccccccchh-hhcCCCCc
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIP-KGIKKLIHLRYLALGWNPWIKELPEA-LCELCNLQ 367 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~ 367 (698)
++++.|+++++..... ....|.++++|+.|+++ .+..++ ..++.+++|++|++++|. +..+|.. ++++++|+
T Consensus 52 ~~L~~L~l~~n~i~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRITYI---SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCS
T ss_pred ccCcEEECCCCcCccc---CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCC
Confidence 4788888888764432 22357788888888887 556654 458888899999998888 8888876 78888999
Q ss_pred EeeccCCCCCcccch--hhhccccCCceecCCccCCCcC-CcCCCCCCCCCccCceeccCCCCccccccccccccccccc
Q 005407 368 TLDVSGCDNLKRLPE--RIGELINLRHLMNSRQDDSSYM-PRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLE 444 (698)
Q Consensus 368 ~L~l~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ 444 (698)
+|++++|. +..+|. .++.+++|++|++++|..+..+ |..++++++|++|++..+...... ...+..+++|+
T Consensus 128 ~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~--- 201 (353)
T 2z80_A 128 FLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE--PKSLKSIQNVS--- 201 (353)
T ss_dssp EEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC--TTTTTTCSEEE---
T ss_pred EEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC--HHHHhccccCC---
Confidence 99998876 777776 6788889999998888555555 456788888888887766544321 11233333333
Q ss_pred CceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCC--CCCCCc
Q 005407 445 GSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDT--IPPTSN 522 (698)
Q Consensus 445 ~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~p~ 522 (698)
.+.+.... ........+..+++|+.|+++.+....... ...........++.+++.++.... +..+|.
T Consensus 202 -~L~l~~n~-------l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 202 -HLILHMKQ-------HILLLEIFVDVTSSVECLELRDTDLDTFHF--SELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp -EEEEECSC-------STTHHHHHHHHTTTEEEEEEESCBCTTCCC--C------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred -eecCCCCc-------cccchhhhhhhcccccEEECCCCccccccc--cccccccccchhhccccccccccCcchhhhHH
Confidence 44443221 111112223456788899998876542110 011122345667788887655432 111267
Q ss_pred hhccccCccEEEEcCCCCCCcCC-C-CCCCCCcceeeccCCc
Q 005407 523 WMLSLTKLRVLTLRHCFLCECLP-C-LGKLPCLETLTLEGMT 562 (698)
Q Consensus 523 ~~~~l~~L~~L~L~~c~~~~~l~-~-l~~L~~L~~L~L~~c~ 562 (698)
++..+++|+.|++++|... .+| . ++.+++|++|++++++
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred HHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 7888999999999999765 455 4 5889999999999875
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=5.9e-19 Score=190.49 Aligned_cols=365 Identities=17% Similarity=0.067 Sum_probs=214.5
Q ss_pred cceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhh-cccccccccCccceeeeCCC--Ccc-cchhh-cccc--
Q 005407 268 KARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRT-IASSKLFDRLTCLRSIDGPP--VRK-IPKGI-KKLI-- 340 (698)
Q Consensus 268 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~--~~~-lp~~i-~~l~-- 340 (698)
.++.+.+..+..........+..+++|++|+++++...... ......+..+++|++|+++. +.. .+..+ ..+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 45666776665533333333567888999999988754332 12344567778889998883 322 12222 2344
Q ss_pred --cCceEecccccccc-----ccchhhhcCCCCcEeeccCCCCCcc-cchhhhc-----cccCCceecCCccCCC----c
Q 005407 341 --HLRYLALGWNPWIK-----ELPEALCELCNLQTLDVSGCDNLKR-LPERIGE-----LINLRHLMNSRQDDSS----Y 403 (698)
Q Consensus 341 --~L~~L~L~~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~l~~-lp~~i~~-----l~~L~~L~l~~~~~~~----~ 403 (698)
+|++|++++|. +. .+|..+.++++|++|++++|. +.. .+..+.. .++|++|++++|.... .
T Consensus 84 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 84 SCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp TCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 69999999988 66 567888889999999999887 432 2333322 4579999998884332 2
Q ss_pred CCcCCCCCCCCCccCceeccCCCCcccccccc-ccc-ccccccCceeEccccCcCCCCCcchhhcccccccccccceeee
Q 005407 404 MPRGMERLTSLRTLGSFVASRGKSSKACSRLK-SLN-KLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLW 481 (698)
Q Consensus 404 ~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~-~l~-~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 481 (698)
++..+..+++|++|++..+..... +...+. .+. ....++ .+.+.+..- .. .........+..+++|+.|+++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~--~~~~l~~~l~~~~~~L~-~L~L~~n~l-~~--~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEA--GVRVLCQGLKDSPCQLE-ALKLESCGV-TS--DNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHH--HHHHHHHHHHHSCCCCC-EEECTTSCC-BT--THHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHhhCCCCCEEECcCCCcchH--HHHHHHHHHhcCCCCce-EEEccCCCC-cH--HHHHHHHHHHHhCCCccEEecc
Confidence 344556678888887765443221 100111 111 122344 454443311 00 0011123445678899999998
Q ss_pred eccCCCcccHHHhh-ccCCCCCCCceEEEEeecCCCCC--CCCchhccccCccEEEEcCCCCCCcCC-C-----CCCCCC
Q 005407 482 FDRTTETKGHRVVL-ECLQPPRSLEKLEILAYEGDTIP--PTSNWMLSLTKLRVLTLRHCFLCECLP-C-----LGKLPC 552 (698)
Q Consensus 482 ~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~p~~~~~l~~L~~L~L~~c~~~~~l~-~-----l~~L~~ 552 (698)
.+..... +...+. .....+++|+.|++.++...... .++..+..+++|++|++++|......+ . ....++
T Consensus 236 ~n~l~~~-~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 236 SNKLGDV-GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp SSBCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred CCcCChH-HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 8764221 111222 22335789999999887655410 015566678999999999986432111 1 123468
Q ss_pred cceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcC-CCCccce
Q 005407 553 LETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKT-IMPRLRH 631 (698)
Q Consensus 553 L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~~~~L~~ 631 (698)
|++|++++|. ++..+...+.. ....+++|++|+++++ .+............. ..++|++
T Consensus 315 L~~L~L~~n~-l~~~~~~~l~~------------------~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 315 LESLWVKSCS-FTAACCSHFSS------------------VLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp CCEEECTTSC-CBGGGHHHHHH------------------HHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCE
T ss_pred ceeeEcCCCC-CchHHHHHHHH------------------HHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEE
Confidence 9999999886 33221111100 0235689999999886 343321100000111 2679999
Q ss_pred eeeccCCCCC-----CCCccccCCCCcceEEEccCc
Q 005407 632 LSICWSPELK-----ALPDYILGSTSLDKLLIYYSR 662 (698)
Q Consensus 632 L~l~~c~~L~-----~lp~~~~~l~~L~~L~i~~C~ 662 (698)
|++++| .+. .+|..+..+++|++|++++|+
T Consensus 375 L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 375 LWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp EECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred EECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 999997 566 577777778999999999986
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=4.6e-16 Score=158.47 Aligned_cols=136 Identities=15% Similarity=0.122 Sum_probs=93.0
Q ss_pred CCCCCCceEEEEeecCCCCCCCCchh-ccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceeeeCccccCCCcc
Q 005407 499 QPPRSLEKLEILAYEGDTIPPTSNWM-LSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKRLGNEFLGIAED 577 (698)
Q Consensus 499 ~~~~~L~~L~l~~~~~~~~~~~p~~~-~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~ 577 (698)
..+++|+.|++.++....+. |..+ ..+++|++|+|++|... .++....+++|+.|+|++|. ++.++..+
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~--~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------ 210 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVN--FAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNK-LAFMGPEF------ 210 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEE--GGGGGGGTTTCCEEECTTSCCC-EEECCCCCTTCCEEECCSSC-CCEECGGG------
T ss_pred hccCCCCEEECCCCCCCccc--HHHHhhccCcCCEEECCCCcCc-ccccccccccCCEEECCCCc-CCcchhhh------
Confidence 34556677777666555432 3333 46788999999888643 44555568889999998865 66665532
Q ss_pred ccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCC-CCCCccccCCCCcceE
Q 005407 578 DQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPEL-KALPDYILGSTSLDKL 656 (698)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~lp~~~~~l~~L~~L 656 (698)
..+++|+.|+++++ .++.++. ....+++|+.|++++++-. ..+|..+..++.|+.|
T Consensus 211 -----------------~~l~~L~~L~L~~N-~l~~l~~-----~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 211 -----------------QSAAGVTWISLRNN-KLVLIEK-----ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp -----------------GGGTTCSEEECTTS-CCCEECT-----TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred -----------------cccCcccEEECcCC-cccchhh-----HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 45788888888884 6666654 4557788888888886533 2566666677888888
Q ss_pred EEccCcccccc
Q 005407 657 LIYYSRHLNNR 667 (698)
Q Consensus 657 ~i~~C~~l~~~ 667 (698)
++.+|+.++..
T Consensus 268 ~l~~~~~l~~~ 278 (317)
T 3o53_A 268 AKQTVKKLTGQ 278 (317)
T ss_dssp HHHHHHHHHSS
T ss_pred ECCCchhccCC
Confidence 88877766654
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.63 E-value=9.3e-15 Score=146.49 Aligned_cols=92 Identities=24% Similarity=0.259 Sum_probs=64.0
Q ss_pred eeeeCC--CCcccchhhcccccCceEeccccccccccch-hhhcCCCCcEeeccCCCCCccc-chhhhccccCCceecCC
Q 005407 322 RSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPE-ALCELCNLQTLDVSGCDNLKRL-PERIGELINLRHLMNSR 397 (698)
Q Consensus 322 ~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l-p~~i~~l~~L~~L~l~~ 397 (698)
+.++++ .+..+|.++ ..+|++|++++|. +..+|. .+.++++|++|++++|. +..+ |..++.+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCC
Confidence 345555 566777544 4688888888888 777764 57888888888888876 5554 66788888888888888
Q ss_pred ccCCCcC-CcCCCCCCCCCcc
Q 005407 398 QDDSSYM-PRGMERLTSLRTL 417 (698)
Q Consensus 398 ~~~~~~~-p~~i~~L~~L~~L 417 (698)
|..+..+ |..+..+++|++|
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCccccCHHHhcCCcCCCEE
Confidence 7534444 4445555555555
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=7.5e-16 Score=156.92 Aligned_cols=215 Identities=17% Similarity=0.120 Sum_probs=105.2
Q ss_pred cccCccceeeeCC--CCcccc-hhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCC
Q 005407 315 FDRLTCLRSIDGP--PVRKIP-KGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLR 391 (698)
Q Consensus 315 ~~~l~~L~~L~l~--~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~ 391 (698)
+..+++|+.|+++ .+..++ ..++.+++|++|++++|. +..+++ +..+++|++|++++|. +..+|. .++|+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~----~~~L~ 102 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIE 102 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE-EEEEEE----CTTCC
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc-cccccC----CCCcC
Confidence 4455666666666 444444 456777777777777776 665554 6777777777777765 555442 36777
Q ss_pred ceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccc-c
Q 005407 392 HLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDL-K 470 (698)
Q Consensus 392 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l-~ 470 (698)
+|++++| .+..++.. .+++|++|++..+........ .+..+++|. .+.+.... ........+ .
T Consensus 103 ~L~l~~n-~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~--~~~~l~~L~----~L~Ls~N~-------l~~~~~~~~~~ 166 (317)
T 3o53_A 103 TLHAANN-NISRVSCS--RGQGKKNIYLANNKITMLRDL--DEGCRSRVQ----YLDLKLNE-------IDTVNFAELAA 166 (317)
T ss_dssp EEECCSS-CCSEEEEC--CCSSCEEEECCSSCCCSGGGB--CTGGGSSEE----EEECTTSC-------CCEEEGGGGGG
T ss_pred EEECCCC-ccCCcCcc--ccCCCCEEECCCCCCCCccch--hhhccCCCC----EEECCCCC-------CCcccHHHHhh
Confidence 7777766 33333322 245566665544333221110 111222222 22222110 000011111 2
Q ss_pred ccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCC
Q 005407 471 SKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKL 550 (698)
Q Consensus 471 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L 550 (698)
.+++|+.|+++.+.+... .....+++|+.|++.++....+ |..+..+++|+.|+|++|......+.+..+
T Consensus 167 ~l~~L~~L~L~~N~l~~~-------~~~~~l~~L~~L~Ls~N~l~~l---~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l 236 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDV-------KGQVVFAKLKTLDLSSNKLAFM---GPEFQSAAGVTWISLRNNKLVLIEKALRFS 236 (317)
T ss_dssp GTTTCCEEECTTSCCCEE-------ECCCCCTTCCEEECCSSCCCEE---CGGGGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred ccCcCCEEECCCCcCccc-------ccccccccCCEEECCCCcCCcc---hhhhcccCcccEEECcCCcccchhhHhhcC
Confidence 344555555555443211 1122345555555555554444 444555555666666555433322245555
Q ss_pred CCcceeeccCCc
Q 005407 551 PCLETLTLEGMT 562 (698)
Q Consensus 551 ~~L~~L~L~~c~ 562 (698)
++|+.|++++++
T Consensus 237 ~~L~~L~l~~N~ 248 (317)
T 3o53_A 237 QNLEHFDLRGNG 248 (317)
T ss_dssp TTCCEEECTTCC
T ss_pred CCCCEEEccCCC
Confidence 555666555543
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.61 E-value=1.3e-14 Score=159.92 Aligned_cols=253 Identities=17% Similarity=0.127 Sum_probs=167.1
Q ss_pred cceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCceE
Q 005407 268 KARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYL 345 (698)
Q Consensus 268 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L 345 (698)
..+.+.+.++... ..+..+. ++|+.|+++++..... +. .+++|++|+++ .+..+|. .+++|++|
T Consensus 41 ~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~l~~l----p~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L 106 (622)
T 3g06_A 41 GNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLTSL----PA---LPPELRTLEVSGNQLTSLPV---LPPGLLEL 106 (622)
T ss_dssp CCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCCCSCC----CC---CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred CCcEEEecCCCcC--ccChhhC--CCCcEEEecCCCCCCC----CC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence 3567777776663 3444443 7999999999865432 22 46788888888 6778887 78999999
Q ss_pred eccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCC
Q 005407 346 ALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRG 425 (698)
Q Consensus 346 ~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~ 425 (698)
++++|. +..+|. .+.+|++|++++|. +..+|.. +++|++|++++| .+..+|..+ .+|+.|.+..+...
T Consensus 107 ~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~~---~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 107 SIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALP---SELCKLWAYNNQLT 174 (622)
T ss_dssp EECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSSCCS
T ss_pred ECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCcc---CCCCEEECCCCCCC
Confidence 999998 999987 67899999999987 8889875 489999999998 566677543 45565644332222
Q ss_pred CCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCc
Q 005407 426 KSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLE 505 (698)
Q Consensus 426 ~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 505 (698)
..+ ..+++|+.|+++.+.+.. ++ ..+++|+
T Consensus 175 ~l~-----------------------------------------~~~~~L~~L~Ls~N~l~~------l~---~~~~~L~ 204 (622)
T 3g06_A 175 SLP-----------------------------------------MLPSGLQELSVSDNQLAS------LP---TLPSELY 204 (622)
T ss_dssp CCC-----------------------------------------CCCTTCCEEECCSSCCSC------CC---CCCTTCC
T ss_pred CCc-----------------------------------------ccCCCCcEEECCCCCCCC------CC---Cccchhh
Confidence 110 112345555555544221 01 1235677
Q ss_pred eEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceeeeCccccCCCcccccccccc
Q 005407 506 KLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQA 585 (698)
Q Consensus 506 ~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~ 585 (698)
.|.+.++....+ |. .+++|+.|+|++|.. ..+| ..+++|+.|+|++|. ++.+|.
T Consensus 205 ~L~L~~N~l~~l---~~---~~~~L~~L~Ls~N~L-~~lp--~~l~~L~~L~Ls~N~-L~~lp~---------------- 258 (622)
T 3g06_A 205 KLWAYNNRLTSL---PA---LPSGLKELIVSGNRL-TSLP--VLPSELKELMVSGNR-LTSLPM---------------- 258 (622)
T ss_dssp EEECCSSCCSSC---CC---CCTTCCEEECCSSCC-SCCC--CCCTTCCEEECCSSC-CSCCCC----------------
T ss_pred EEECcCCccccc---CC---CCCCCCEEEccCCcc-CcCC--CCCCcCcEEECCCCC-CCcCCc----------------
Confidence 777776666555 43 246777777777743 3354 456777777777753 554432
Q ss_pred ccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCC
Q 005407 586 ETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSP 638 (698)
Q Consensus 586 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 638 (698)
.+++|+.|+++++ .++.+|. .+..+++|+.|++++|+
T Consensus 259 ----------~~~~L~~L~Ls~N-~L~~lp~-----~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 ----------LPSGLLSLSVYRN-QLTRLPE-----SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp ----------CCTTCCEEECCSS-CCCSCCG-----GGGGSCTTCEEECCSCC
T ss_pred ----------ccccCcEEeCCCC-CCCcCCH-----HHhhccccCEEEecCCC
Confidence 3567777777774 5666654 44567778888887764
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=1.1e-15 Score=164.90 Aligned_cols=233 Identities=17% Similarity=0.120 Sum_probs=121.9
Q ss_pred cCceEeccccccccccc-hhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCc
Q 005407 341 HLRYLALGWNPWIKELP-EALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGS 419 (698)
Q Consensus 341 ~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 419 (698)
+|++|+|++|. +..+| ..++.+++|++|+|++|. +...++ ++.+++|++|++++| .+..+|. .++|++|++
T Consensus 35 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEEC
T ss_pred CccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEEC
Confidence 66667776666 55443 456666667777776665 444433 666666666666666 2333321 134444433
Q ss_pred eeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCC
Q 005407 420 FVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQ 499 (698)
Q Consensus 420 ~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 499 (698)
..+.....+ ...+++|+.|+++.+.... ..+..+.
T Consensus 107 ~~N~l~~~~----------------------------------------~~~l~~L~~L~L~~N~l~~-----~~~~~~~ 141 (487)
T 3oja_A 107 ANNNISRVS----------------------------------------CSRGQGKKNIYLANNKITM-----LRDLDEG 141 (487)
T ss_dssp CSSCCCCEE----------------------------------------ECCCSSCEEEECCSSCCCS-----GGGBCGG
T ss_pred cCCcCCCCC----------------------------------------ccccCCCCEEECCCCCCCC-----CCchhhc
Confidence 221111000 0011234444444433211 1122233
Q ss_pred CCCCCceEEEEeecCCCCCCCCchhc-cccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceeeeCccccCCCccc
Q 005407 500 PPRSLEKLEILAYEGDTIPPTSNWML-SLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDD 578 (698)
Q Consensus 500 ~~~~L~~L~l~~~~~~~~~~~p~~~~-~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~ 578 (698)
.+++|+.|++.++...... |.++. .+++|+.|+|++|... .++....+++|+.|+|++|. ++.++..+
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~--~~~l~~~l~~L~~L~Ls~N~l~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~------- 210 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVN--FAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNK-LAFMGPEF------- 210 (487)
T ss_dssp GGSSEEEEECTTSCCCEEE--GGGGGGGTTTCCEEECTTSCCC-EEECCCCCTTCCEEECCSSC-CCEECGGG-------
T ss_pred CCCCCCEEECCCCCCCCcC--hHHHhhhCCcccEEecCCCccc-cccccccCCCCCEEECCCCC-CCCCCHhH-------
Confidence 3455666666555544432 44443 5677777777777533 34545567777777777654 55554431
Q ss_pred cccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCC-CCCCccccCCCCcceEE
Q 005407 579 QARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPEL-KALPDYILGSTSLDKLL 657 (698)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~lp~~~~~l~~L~~L~ 657 (698)
..+++|+.|++++ +.+..+|. ....+++|+.|++++++-. ..+|..+..++.|+.++
T Consensus 211 ----------------~~l~~L~~L~Ls~-N~l~~lp~-----~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~ 268 (487)
T 3oja_A 211 ----------------QSAAGVTWISLRN-NKLVLIEK-----ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (487)
T ss_dssp ----------------GGGTTCSEEECTT-SCCCEECT-----TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHH
T ss_pred ----------------cCCCCccEEEecC-CcCcccch-----hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEe
Confidence 3566777777776 34555543 3445677777777775432 24454455556666555
Q ss_pred Ec
Q 005407 658 IY 659 (698)
Q Consensus 658 i~ 659 (698)
+.
T Consensus 269 ~~ 270 (487)
T 3oja_A 269 KQ 270 (487)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=6.8e-17 Score=180.24 Aligned_cols=65 Identities=12% Similarity=0.009 Sum_probs=41.2
Q ss_pred CCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCC--CCccccCCCCcceEEEccCccccc
Q 005407 596 AFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKA--LPDYILGSTSLDKLLIYYSRHLNN 666 (698)
Q Consensus 596 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~--lp~~~~~l~~L~~L~i~~C~~l~~ 666 (698)
.+++|++|.++++. ++.... ......+++|++|+|++|+ +.. ++.....+++|+.|++++|+ +++
T Consensus 461 ~~~~L~~L~L~~n~-l~~~~~---~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 461 YSPNVRWMLLGYVG-ESDEGL---MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp SCTTCCEEEECSCC-SSHHHH---HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred hCccceEeeccCCC-CCHHHH---HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 47788888888753 322110 0012357888999998887 532 34334457888999998887 443
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=1.4e-16 Score=177.62 Aligned_cols=352 Identities=12% Similarity=0.041 Sum_probs=207.9
Q ss_pred CcceEEEEEccCCCcccCCcccCC-CCc-ceEEEecCccchhhhcccccccccCccceeeeCCCCcc-------cchhhc
Q 005407 267 WKARHLMIMGEMSKEVPFPSFVYN-ETK-LRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGPPVRK-------IPKGIK 337 (698)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-------lp~~i~ 337 (698)
..++.+.+.++..... ....+.. +++ |+.|.+.++..... ........++++|+.|++....- ++..+.
T Consensus 112 ~~L~~L~L~~~~i~~~-~~~~l~~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDL-DLDRLAKARADDLETLKLDKCSGFTT-DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp TTCCEEEEESCBCCHH-HHHHHHHHHGGGCCEEEEESCEEEEH-HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred CCCCeEEeeccEecHH-HHHHHHHhccccCcEEECcCCCCcCH-HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 3466677666533211 1112222 334 89999888752211 11223345778888888883321 444556
Q ss_pred ccccCceEecccccccc-----ccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCC---CcCCcCCC
Q 005407 338 KLIHLRYLALGWNPWIK-----ELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDS---SYMPRGME 409 (698)
Q Consensus 338 ~l~~L~~L~L~~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~---~~~p~~i~ 409 (698)
.+++|++|++++|. +. .++..+.++++|++|++++|. +..+|..++.+++|++|+++.+... ...+..++
T Consensus 190 ~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 78899999998887 53 566667788999999999977 7778888899999999998754332 23445667
Q ss_pred CCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcc
Q 005407 410 RLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETK 489 (698)
Q Consensus 410 ~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 489 (698)
.+++|+.|.+........+ ..+..+..|+ .+.+.... + ........+..+++|+.|++..+.
T Consensus 268 ~~~~L~~L~l~~~~~~~l~------~~~~~~~~L~-~L~Ls~~~-l-----~~~~~~~~~~~~~~L~~L~L~~~~----- 329 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMP------ILFPFAAQIR-KLDLLYAL-L-----ETEDHCTLIQKCPNLEVLETRNVI----- 329 (592)
T ss_dssp CCTTCCEEEETTCCTTTGG------GGGGGGGGCC-EEEETTCC-C-----CHHHHHHHHTTCTTCCEEEEEGGG-----
T ss_pred ccccccccCccccchhHHH------HHHhhcCCCc-EEecCCCc-C-----CHHHHHHHHHhCcCCCEEeccCcc-----
Confidence 7778877755433222111 1222334444 55555432 1 112222335678899999988321
Q ss_pred cHHHhhccCCCCCCCceEEEEe----------ecCCCCCCCCchhccccCccEEEEcCCCCCCc-CCCCCC-CCCcceee
Q 005407 490 GHRVVLECLQPPRSLEKLEILA----------YEGDTIPPTSNWMLSLTKLRVLTLRHCFLCEC-LPCLGK-LPCLETLT 557 (698)
Q Consensus 490 ~~~~~~~~~~~~~~L~~L~l~~----------~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~-l~~l~~-L~~L~~L~ 557 (698)
....+......+++|+.|++.+ +.......++.....+++|++|+++.+..... +..++. +++|+.|+
T Consensus 330 ~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~ 409 (592)
T 3ogk_B 330 GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409 (592)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEE
T ss_pred CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEE
Confidence 2223333334567899999984 22221101122234688999999955443321 223333 78999999
Q ss_pred ccCC---cceeeeCcc-ccCCCccccccccccccccccccCcCCCcccccccccccc-cccCcccccCCCcCCCCcccee
Q 005407 558 LEGM---TSVKRLGNE-FLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTN-WEEWDDCEIAGGKTIMPRLRHL 632 (698)
Q Consensus 558 L~~c---~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~L~~L 632 (698)
+.+| ..++..|.+ .+. .....+++|++|.++.|.+ +..-.. ......+++|++|
T Consensus 410 l~~~~~~n~l~~~p~~~~~~------------------~~~~~~~~L~~L~L~~~~~~l~~~~~---~~~~~~~~~L~~L 468 (592)
T 3ogk_B 410 LVLLDREERITDLPLDNGVR------------------SLLIGCKKLRRFAFYLRQGGLTDLGL---SYIGQYSPNVRWM 468 (592)
T ss_dssp EEECSCCSCCSSCCCHHHHH------------------HHHHHCTTCCEEEEECCGGGCCHHHH---HHHHHSCTTCCEE
T ss_pred EeecCCCccccCchHHHHHH------------------HHHHhCCCCCEEEEecCCCCccHHHH---HHHHHhCccceEe
Confidence 9853 344433211 000 0024589999999987653 221111 0011258899999
Q ss_pred eeccCCCCCC--CCccccCCCCcceEEEccCc
Q 005407 633 SICWSPELKA--LPDYILGSTSLDKLLIYYSR 662 (698)
Q Consensus 633 ~l~~c~~L~~--lp~~~~~l~~L~~L~i~~C~ 662 (698)
.+++|. +.. ++..+..+++|++|++++|+
T Consensus 469 ~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 469 LLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp EECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred eccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 999874 543 44445678999999999998
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=1e-14 Score=142.02 Aligned_cols=76 Identities=20% Similarity=0.282 Sum_probs=53.8
Q ss_pred CCCCcccchhhcccccCceEeccccccccccch-hhhcCCCCcEeeccCCCCCcccch-hhhccccCCceecCCccCCCc
Q 005407 326 GPPVRKIPKGIKKLIHLRYLALGWNPWIKELPE-ALCELCNLQTLDVSGCDNLKRLPE-RIGELINLRHLMNSRQDDSSY 403 (698)
Q Consensus 326 l~~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~ 403 (698)
+..+..+|. +. .+|++|++++|. ++.+|. .+..+++|++|++++|..+..+|. .+.++++|++|++++|+.+..
T Consensus 20 c~~l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 20 CKDIQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp ECSCSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE
T ss_pred ccCccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 334566666 33 378888888888 887776 577888888888888765666665 567888888888877334444
Q ss_pred CC
Q 005407 404 MP 405 (698)
Q Consensus 404 ~p 405 (698)
+|
T Consensus 96 i~ 97 (239)
T 2xwt_C 96 ID 97 (239)
T ss_dssp EC
T ss_pred cC
Confidence 33
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.55 E-value=7.5e-15 Score=147.17 Aligned_cols=62 Identities=21% Similarity=0.167 Sum_probs=38.1
Q ss_pred CCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCc
Q 005407 499 QPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMT 562 (698)
Q Consensus 499 ~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~ 562 (698)
..+++|+.|++.++....+. |.++..+++|+.|++++|......+ .+..+++|+.|++++++
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHVH--PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cCccccCEEECCCCcccccC--HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 34455666666555544432 5566677777777777775444332 36667777777777654
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=8.7e-14 Score=139.29 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=37.0
Q ss_pred hcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCccc-chhhhccccCCceecCCc
Q 005407 336 IKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRL-PERIGELINLRHLMNSRQ 398 (698)
Q Consensus 336 i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l-p~~i~~l~~L~~L~l~~~ 398 (698)
++++.+++.++++++. +..+|..+. ++|++|++++|. +..+ |..+..+++|++|++++|
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n 65 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA 65 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS
T ss_pred ccccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCC
Confidence 4556666777776666 666665443 567777777666 3333 445666677777776665
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=4.8e-14 Score=137.23 Aligned_cols=216 Identities=15% Similarity=0.145 Sum_probs=144.4
Q ss_pred ceEeccccccccccchhhhcCCCCcEeeccCCCCCcccch-hhhccccCCceecCCccCCCcCCc-CCCCCCCCCccCce
Q 005407 343 RYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPE-RIGELINLRHLMNSRQDDSSYMPR-GMERLTSLRTLGSF 420 (698)
Q Consensus 343 ~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~ 420 (698)
+.+.+.... ++++|. +. .+|++|++++|. +..+|. .++.+++|++|++++|..+..+|. .++.+++|++|++.
T Consensus 14 ~~~~v~c~~-l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~ 88 (239)
T 2xwt_C 14 EDFRVTCKD-IQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88 (239)
T ss_dssp STTEEEECS-CSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEE
T ss_pred CcceeEccC-ccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECC
Confidence 334443333 888887 44 489999999987 777776 688899999999998854655554 45566666666443
Q ss_pred e-ccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCC
Q 005407 421 V-ASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQ 499 (698)
Q Consensus 421 ~-~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 499 (698)
. +.... +. ...+.
T Consensus 89 ~~n~l~~----------------i~--------------------------------------------------~~~f~ 102 (239)
T 2xwt_C 89 NTRNLTY----------------ID--------------------------------------------------PDALK 102 (239)
T ss_dssp EETTCCE----------------EC--------------------------------------------------TTSEE
T ss_pred CCCCeeE----------------cC--------------------------------------------------HHHhC
Confidence 2 11100 00 01122
Q ss_pred CCCCCceEEEEeecCCCCCCCCchhccccCcc---EEEEcCCCCCCcCC--CCCCCCCcc-eeeccCCcceeeeCccccC
Q 005407 500 PPRSLEKLEILAYEGDTIPPTSNWMLSLTKLR---VLTLRHCFLCECLP--CLGKLPCLE-TLTLEGMTSVKRLGNEFLG 573 (698)
Q Consensus 500 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~---~L~L~~c~~~~~l~--~l~~L~~L~-~L~L~~c~~l~~l~~~~~~ 573 (698)
.+++|+.|++.++....+ |. +..+++|+ .|++++|..+..++ .++.+++|+ .|+++++. ++.++...+
T Consensus 103 ~l~~L~~L~l~~n~l~~l---p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~- 176 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKMF---PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAF- 176 (239)
T ss_dssp CCTTCCEEEEEEECCCSC---CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTT-
T ss_pred CCCCCCEEeCCCCCCccc---cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhc-
Confidence 345677777777666555 54 55666776 99999884455444 477889999 99998764 667765432
Q ss_pred CCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCC-CccceeeeccCCCCCCCCccccCCCC
Q 005407 574 IAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIM-PRLRHLSICWSPELKALPDYILGSTS 652 (698)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L~~lp~~~~~l~~ 652 (698)
..++|+.|++.+++.++.++. .....+ ++|+.|++++ ..++.+|.. .+++
T Consensus 177 ----------------------~~~~L~~L~L~~n~~l~~i~~----~~~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~ 227 (239)
T 2xwt_C 177 ----------------------NGTKLDAVYLNKNKYLTVIDK----DAFGGVYSGPSLLDVSQ-TSVTALPSK--GLEH 227 (239)
T ss_dssp ----------------------TTCEEEEEECTTCTTCCEECT----TTTTTCSBCCSEEECTT-CCCCCCCCT--TCTT
T ss_pred ----------------------CCCCCCEEEcCCCCCcccCCH----HHhhccccCCcEEECCC-CccccCChh--Hhcc
Confidence 226899999988766777654 234466 8999999998 478888876 4789
Q ss_pred cceEEEccCccc
Q 005407 653 LDKLLIYYSRHL 664 (698)
Q Consensus 653 L~~L~i~~C~~l 664 (698)
|+.|++.++..|
T Consensus 228 L~~L~l~~~~~l 239 (239)
T 2xwt_C 228 LKELIARNTWTL 239 (239)
T ss_dssp CSEEECTTC---
T ss_pred CceeeccCccCC
Confidence 999999988754
No 74
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=5.9e-14 Score=144.94 Aligned_cols=230 Identities=14% Similarity=0.125 Sum_probs=150.0
Q ss_pred CCcccchhhcccccCceEeccccccccccch-hhhcCCCCcEeeccCCCCCcccchh-hhccccCCceecCCccCCCcCC
Q 005407 328 PVRKIPKGIKKLIHLRYLALGWNPWIKELPE-ALCELCNLQTLDVSGCDNLKRLPER-IGELINLRHLMNSRQDDSSYMP 405 (698)
Q Consensus 328 ~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p 405 (698)
.++.+|.++ ..++++|+|++|. |+.+|. .+.++++|++|+|++|...+.+|.. +.++++|+++...+++.+..+|
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 577888776 3689999999998 999986 4789999999999998866777754 5788888876555555666664
Q ss_pred -cCCCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeecc
Q 005407 406 -RGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDR 484 (698)
Q Consensus 406 -~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 484 (698)
..++.+++|+.|++..+.....+... .. .. ..+. .+.+.... ++..+.
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~-~~---~~-~~l~-~l~l~~~~--------------------~i~~l~----- 145 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKHLPDVH-KI---HS-LQKV-LLDIQDNI--------------------NIHTIE----- 145 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSSCCCCT-TC---CB-SSCE-EEEEESCT--------------------TCCEEC-----
T ss_pred chhhhhccccccccccccccccCCchh-hc---cc-chhh-hhhhcccc--------------------cccccc-----
Confidence 55788899999887766544322111 00 00 0010 11111100 011000
Q ss_pred CCCcccHHHhhccCC-CCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC--CCCCCCCcceeeccCC
Q 005407 485 TTETKGHRVVLECLQ-PPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP--CLGKLPCLETLTLEGM 561 (698)
Q Consensus 485 ~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~--~l~~L~~L~~L~L~~c 561 (698)
...+. ....++.|.+.++....+ |.......+|+.|.+.++..++.+| .++.+++|+.|+|+++
T Consensus 146 ----------~~~f~~~~~~l~~L~L~~N~i~~i---~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 146 ----------RNSFVGLSFESVILWLNKNGIQEI---HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp ----------TTSSTTSBSSCEEEECCSSCCCEE---CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred ----------ccchhhcchhhhhhccccccccCC---ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence 00111 123466777777666665 5555556788888888777777776 4678888899998876
Q ss_pred cceeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeecc
Q 005407 562 TSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICW 636 (698)
Q Consensus 562 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 636 (698)
. ++.+|. ..|.+|+.|.+.++.+++.+|. ...+++|+.+.+.+
T Consensus 213 ~-l~~lp~-------------------------~~~~~L~~L~~l~~~~l~~lP~------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 213 R-IHSLPS-------------------------YGLENLKKLRARSTYNLKKLPT------LEKLVALMEASLTY 255 (350)
T ss_dssp C-CCCCCS-------------------------SSCTTCCEEECTTCTTCCCCCC------TTTCCSCCEEECSC
T ss_pred C-cCccCh-------------------------hhhccchHhhhccCCCcCcCCC------chhCcChhhCcCCC
Confidence 4 777764 3577778888777788887774 33678888888755
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.53 E-value=1e-14 Score=148.10 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=21.4
Q ss_pred CccceeeeccCCCCCCCCccccCCCCcceEEEccCc
Q 005407 627 PRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 662 (698)
Q Consensus 627 ~~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~i~~C~ 662 (698)
++|++|+++++ +++.+|. +..+++|+.|++++.+
T Consensus 274 ~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 274 AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 56666666664 5666654 5556667777766654
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=5.3e-14 Score=142.36 Aligned_cols=193 Identities=21% Similarity=0.199 Sum_probs=115.8
Q ss_pred CccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceec
Q 005407 318 LTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMN 395 (698)
Q Consensus 318 l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l 395 (698)
++.|+.|++. .+..+| ++..+++|++|++++|. +..+|. +..+++|++|++++|. +..+| .++.+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 4444444444 344444 35666666666666665 666665 6666666666666665 55554 3666666666666
Q ss_pred CCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccc
Q 005407 396 SRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRL 475 (698)
Q Consensus 396 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L 475 (698)
++| .+..+|. ++.+++|+.|++..+..... . .+..+++|
T Consensus 115 ~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~-------~--------------------------------~l~~l~~L 153 (308)
T 1h6u_A 115 TST-QITDVTP-LAGLSNLQVLYLDLNQITNI-------S--------------------------------PLAGLTNL 153 (308)
T ss_dssp TTS-CCCCCGG-GTTCTTCCEEECCSSCCCCC-------G--------------------------------GGGGCTTC
T ss_pred CCC-CCCCchh-hcCCCCCCEEECCCCccCcC-------c--------------------------------cccCCCCc
Confidence 666 3333432 55555555554432221110 0 02233445
Q ss_pred cceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcce
Q 005407 476 VELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLET 555 (698)
Q Consensus 476 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~ 555 (698)
+.|+++.+..... ..+..+++|+.|++.++....+ +. +..+++|+.|++++|... .++.+..+++|+.
T Consensus 154 ~~L~l~~n~l~~~-------~~l~~l~~L~~L~l~~n~l~~~---~~-l~~l~~L~~L~L~~N~l~-~~~~l~~l~~L~~ 221 (308)
T 1h6u_A 154 QYLSIGNAQVSDL-------TPLANLSKLTTLKADDNKISDI---SP-LASLPNLIEVHLKNNQIS-DVSPLANTSNLFI 221 (308)
T ss_dssp CEEECCSSCCCCC-------GGGTTCTTCCEEECCSSCCCCC---GG-GGGCTTCCEEECTTSCCC-BCGGGTTCTTCCE
T ss_pred cEEEccCCcCCCC-------hhhcCCCCCCEEECCCCccCcC---hh-hcCCCCCCEEEccCCccC-ccccccCCCCCCE
Confidence 5555555543221 1145677888888888777666 43 778999999999999654 4446888999999
Q ss_pred eeccCCcceeeeCc
Q 005407 556 LTLEGMTSVKRLGN 569 (698)
Q Consensus 556 L~L~~c~~l~~l~~ 569 (698)
|++++++ +...+.
T Consensus 222 L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 222 VTLTNQT-ITNQPV 234 (308)
T ss_dssp EEEEEEE-EECCCE
T ss_pred EEccCCe-eecCCe
Confidence 9999876 555544
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=6.1e-14 Score=141.91 Aligned_cols=198 Identities=17% Similarity=0.160 Sum_probs=139.1
Q ss_pred hcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCC
Q 005407 336 IKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLR 415 (698)
Q Consensus 336 i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 415 (698)
...+.+|++|++++|. +..+|. +..+++|++|++++|. +..+|. +..+++|++|++++|. +..++ .++.+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~l~~-~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG-VTTIEG-VQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCC-ccCchh-hhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCC
Confidence 5678899999999998 888884 8999999999999986 788877 9999999999999883 44443 355555555
Q ss_pred ccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhh
Q 005407 416 TLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVL 495 (698)
Q Consensus 416 ~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 495 (698)
.|++..+ .... .
T Consensus 111 ~L~l~~n-------------------------------------------------------------~l~~-------~ 122 (308)
T 1h6u_A 111 TLDLTST-------------------------------------------------------------QITD-------V 122 (308)
T ss_dssp EEECTTS-------------------------------------------------------------CCCC-------C
T ss_pred EEECCCC-------------------------------------------------------------CCCC-------c
Confidence 5533211 1000 0
Q ss_pred ccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceeeeCccccCCC
Q 005407 496 ECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKRLGNEFLGIA 575 (698)
Q Consensus 496 ~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~ 575 (698)
..+..+++|+.|++.++....+ +. +..+++|+.|++++|... .++.+..+++|+.|++++|. ++.++.
T Consensus 123 ~~l~~l~~L~~L~l~~n~l~~~---~~-l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~-l~~~~~------ 190 (308)
T 1h6u_A 123 TPLAGLSNLQVLYLDLNQITNI---SP-LAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADDNK-ISDISP------ 190 (308)
T ss_dssp GGGTTCTTCCEEECCSSCCCCC---GG-GGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSC-CCCCGG------
T ss_pred hhhcCCCCCCEEECCCCccCcC---cc-ccCCCCccEEEccCCcCC-CChhhcCCCCCCEEECCCCc-cCcChh------
Confidence 0123445666777766655555 33 778899999999999544 45558889999999999864 554432
Q ss_pred ccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCc
Q 005407 576 EDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPD 645 (698)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~ 645 (698)
...+++|+.|+++++ .+..++. ...+++|+.|+++++ .+...|.
T Consensus 191 ------------------l~~l~~L~~L~L~~N-~l~~~~~------l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 191 ------------------LASLPNLIEVHLKNN-QISDVSP------LANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp ------------------GGGCTTCCEEECTTS-CCCBCGG------GTTCTTCCEEEEEEE-EEECCCE
T ss_pred ------------------hcCCCCCCEEEccCC-ccCcccc------ccCCCCCCEEEccCC-eeecCCe
Confidence 246788888888884 4555542 346888888888886 4666554
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=3.7e-15 Score=151.38 Aligned_cols=246 Identities=19% Similarity=0.187 Sum_probs=158.1
Q ss_pred CCCcceEEEecCccchhhhcccccccccCccceeeeCC--CC--cccchhhc-------ccccCceEecccccccc-ccc
Q 005407 290 NETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PV--RKIPKGIK-------KLIHLRYLALGWNPWIK-ELP 357 (698)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~--~~lp~~i~-------~l~~L~~L~L~~~~~l~-~lp 357 (698)
..++|+.+.+.++.. . .+..+... |+.|+++ .+ ..+|..+. .+.+|++|++++|. +. .+|
T Consensus 41 ~~~~L~~l~l~~n~l-~----~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 112 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-A----DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAP 112 (312)
T ss_dssp EEEECTTHHHHCCTT-C----CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCC
T ss_pred cCCCceeEeeccccc-c----cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhH
Confidence 344566666666554 1 11111111 5666666 22 23565555 68889999999988 55 678
Q ss_pred hhh--hcCCCCcEeeccCCCCCcccchhhhcc-----ccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCccc
Q 005407 358 EAL--CELCNLQTLDVSGCDNLKRLPERIGEL-----INLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKA 430 (698)
Q Consensus 358 ~~~--~~l~~L~~L~l~~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~ 430 (698)
..+ +.+++|++|++++|. +..+|..++.+ ++|++|++++|......|..++.+++|++|++..+.......
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~- 190 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG- 190 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH-
T ss_pred HHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH-
Confidence 766 888999999999887 66668888877 889999998885444444788888999988877654321000
Q ss_pred ccccccc--cccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEE
Q 005407 431 CSRLKSL--NKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLE 508 (698)
Q Consensus 431 ~~~l~~l--~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 508 (698)
....+ ..+..|+ .+.+.... +.. ........+..+++|+.|+++.+...... ....+..+++|+.|+
T Consensus 191 --~~~~~~~~~l~~L~-~L~L~~N~-l~~---~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~~l~~L~~L~ 259 (312)
T 1wwl_A 191 --LISALCPLKFPTLQ-VLALRNAG-MET---PSGVCSALAAARVQLQGLDLSHNSLRDAA----GAPSCDWPSQLNSLN 259 (312)
T ss_dssp --HHHHSCTTSCTTCC-EEECTTSC-CCC---HHHHHHHHHHTTCCCSEEECTTSCCCSSC----CCSCCCCCTTCCEEE
T ss_pred --HHHHHHhccCCCCC-EEECCCCc-Ccc---hHHHHHHHHhcCCCCCEEECCCCcCCccc----chhhhhhcCCCCEEE
Confidence 01111 3333343 44443321 000 11112223345688999999888753311 112344568999999
Q ss_pred EEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCc
Q 005407 509 ILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMT 562 (698)
Q Consensus 509 l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~ 562 (698)
+.++....+ |.++. ++|++|+|++|.... +|.+..+++|+.|++++++
T Consensus 260 Ls~N~l~~i---p~~~~--~~L~~L~Ls~N~l~~-~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 260 LSFTGLKQV---PKGLP--AKLSVLDLSYNRLDR-NPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTSCCSSC---CSSCC--SEEEEEECCSSCCCS-CCCTTTSCEEEEEECTTCT
T ss_pred CCCCccChh---hhhcc--CCceEEECCCCCCCC-ChhHhhCCCCCEEeccCCC
Confidence 998887766 77665 899999999996544 4778899999999999864
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.50 E-value=5.7e-14 Score=140.01 Aligned_cols=87 Identities=25% Similarity=0.432 Sum_probs=44.3
Q ss_pred CcccchhhcccccCceEeccccccccccch-hhhcCCCCcEeeccCCCCCcccch-hhhccccCCceecCCccCCCcCCc
Q 005407 329 VRKIPKGIKKLIHLRYLALGWNPWIKELPE-ALCELCNLQTLDVSGCDNLKRLPE-RIGELINLRHLMNSRQDDSSYMPR 406 (698)
Q Consensus 329 ~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~ 406 (698)
+..+|..+. .+|++|++++|. +..+|. .+.++++|++|++++|. +..++. .++.+++|++|++++|......|.
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred ccccCCCCC--CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 334444332 345666666665 555543 45556666666666654 444332 455566666666655532222234
Q ss_pred CCCCCCCCCccCc
Q 005407 407 GMERLTSLRTLGS 419 (698)
Q Consensus 407 ~i~~L~~L~~L~~ 419 (698)
.+.++++|++|++
T Consensus 95 ~~~~l~~L~~L~l 107 (276)
T 2z62_A 95 AFSGLSSLQKLVA 107 (276)
T ss_dssp TTTTCTTCCEEEC
T ss_pred hhcCCccccEEEC
Confidence 4555555555543
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.49 E-value=2.2e-13 Score=135.79 Aligned_cols=71 Identities=21% Similarity=0.129 Sum_probs=52.5
Q ss_pred EeccccccccccchhhhcCCCCcEeeccCCCCCcccch-hhhccccCCceecCCccCCCcCC-cCCCCCCCCCccCce
Q 005407 345 LALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPE-RIGELINLRHLMNSRQDDSSYMP-RGMERLTSLRTLGSF 420 (698)
Q Consensus 345 L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~ 420 (698)
.+..+.. +.++|..+. .+|++|++++|. +..+|. .+.++++|++|++++| .+..++ ..++.+++|++|++.
T Consensus 12 ~~c~~~~-l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 12 YQCMELN-FYKIPDNLP--FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp EECTTSC-CSSCCSSSC--TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECT
T ss_pred EEecCCC-ccccCCCCC--CCccEEECCCCc-ccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECC
Confidence 4444444 778887654 589999999987 666665 7899999999999998 444444 457777777777553
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.49 E-value=3.1e-15 Score=154.00 Aligned_cols=194 Identities=19% Similarity=0.187 Sum_probs=100.7
Q ss_pred ceEEEecCccchhhhcccccccccC--ccceeeeCC--CCcccchhhcccccCceEeccccccccc--cchhhhcCCCCc
Q 005407 294 LRSLAVPRRLYYKRTIASSKLFDRL--TCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKE--LPEALCELCNLQ 367 (698)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~~~~~~l--~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~--lp~~~~~l~~L~ 367 (698)
++.++++++... +..+..+ ..++.+++. .+...+..+..+++|++|++++|. +.. +|..+..+++|+
T Consensus 49 ~~~l~l~~~~~~------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 49 WQTLDLTGKNLH------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp SSEEECTTCBCC------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCS
T ss_pred heeeccccccCC------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCC
Confidence 556666655322 1122333 445555555 233333445556666666666665 432 555566666666
Q ss_pred EeeccCCCCCcccchhhhccccCCceecCCccCCCc--CCcCCCCCCCCCccCceeccCCCCcccccccccccccccccC
Q 005407 368 TLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSY--MPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEG 445 (698)
Q Consensus 368 ~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~--~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~ 445 (698)
+|++++|......|..++.+++|++|++++|..+.. ++..+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~------------------------------------- 164 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL------------------------------------- 164 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH-------------------------------------
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH-------------------------------------
Confidence 666666653334555566666666666665532221 11111
Q ss_pred ceeEccccCcCCCCCcchhhcccccccccccceeeeec-cCCCcccHHHhhccCCCCC-CCceEEEEeecC----CCCCC
Q 005407 446 SLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFD-RTTETKGHRVVLECLQPPR-SLEKLEILAYEG----DTIPP 519 (698)
Q Consensus 446 ~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~----~~~~~ 519 (698)
..+++|+.|+++++ ... ...+...+..++ +|+.|++.++.. ..+
T Consensus 165 ------------------------~~~~~L~~L~l~~~~~l~----~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l-- 214 (336)
T 2ast_B 165 ------------------------SSCSRLDELNLSWCFDFT----EKHVQVAVAHVSETITQLNLSGYRKNLQKSDL-- 214 (336)
T ss_dssp ------------------------HHCTTCCEEECCCCTTCC----HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH--
T ss_pred ------------------------hcCCCCCEEcCCCCCCcC----hHHHHHHHHhcccCCCEEEeCCCcccCCHHHH--
Confidence 22233444444443 211 111222233345 666666666531 122
Q ss_pred CCchhccccCccEEEEcCCCCCC--cCCCCCCCCCcceeeccCCc
Q 005407 520 TSNWMLSLTKLRVLTLRHCFLCE--CLPCLGKLPCLETLTLEGMT 562 (698)
Q Consensus 520 ~p~~~~~l~~L~~L~L~~c~~~~--~l~~l~~L~~L~~L~L~~c~ 562 (698)
|..+..+++|+.|++++|..+. .++.++.+++|++|++++|.
T Consensus 215 -~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 215 -STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp -HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred -HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 4555677788888888876432 34466777888888887775
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=1.2e-13 Score=148.97 Aligned_cols=213 Identities=15% Similarity=0.091 Sum_probs=119.3
Q ss_pred CCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcE
Q 005407 291 ETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQT 368 (698)
Q Consensus 291 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 368 (698)
+++|+.|+++++..... .+..|..++.|++|+++ .+..+++ ++.+++|++|+|++|. +..+|. .++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQI---SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCC---CGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCE
T ss_pred CCCccEEEeeCCcCCCC---CHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCE
Confidence 33555555555543221 12334455555555555 2333332 5555555555555554 444442 145555
Q ss_pred eeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccCcee
Q 005407 369 LDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLT 448 (698)
Q Consensus 369 L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~ 448 (698)
|++++|. +..+|. ..+++|+.|++++|......|..++.+++|+.|++..+...
T Consensus 104 L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~----------------------- 157 (487)
T 3oja_A 104 LHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID----------------------- 157 (487)
T ss_dssp EECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC-----------------------
T ss_pred EECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC-----------------------
Confidence 5555544 333332 12445555555555332222333444444444433211111
Q ss_pred EccccCcCCCCCcchhhccccc-ccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccc
Q 005407 449 LRRLGNERDLGDDNDDEKVDLK-SKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSL 527 (698)
Q Consensus 449 i~~l~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l 527 (698)
......+. .+++|+.|+++.+.+... .....+++|+.|++.++....+ |..+..+
T Consensus 158 --------------~~~~~~l~~~l~~L~~L~Ls~N~l~~~-------~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~l 213 (487)
T 3oja_A 158 --------------TVNFAELAASSDTLEHLNLQYNFIYDV-------KGQVVFAKLKTLDLSSNKLAFM---GPEFQSA 213 (487)
T ss_dssp --------------EEEGGGGGGGTTTCCEEECTTSCCCEE-------ECCCCCTTCCEEECCSSCCCEE---CGGGGGG
T ss_pred --------------CcChHHHhhhCCcccEEecCCCccccc-------cccccCCCCCEEECCCCCCCCC---CHhHcCC
Confidence 11112222 456788888877764321 2234578999999999887776 6678899
Q ss_pred cCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCc
Q 005407 528 TKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMT 562 (698)
Q Consensus 528 ~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~ 562 (698)
++|+.|+|++|.....++.++.+++|+.|++++++
T Consensus 214 ~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 214 AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp TTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 99999999999766544578889999999999876
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=1.4e-13 Score=136.74 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=43.9
Q ss_pred hcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCc-CCCCCCCC
Q 005407 336 IKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPR-GMERLTSL 414 (698)
Q Consensus 336 i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~L~~L 414 (698)
...+.+|+.|++++|. +..++. +..+++|++|++++|. +..++ .++.+++|++|++++|. +..+|. .++.+++|
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTC
T ss_pred cccccceeeeeeCCCC-cccccc-cccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCC
Confidence 4455666666666665 555554 6666666666666655 44443 46666666666666662 333332 24455555
Q ss_pred CccC
Q 005407 415 RTLG 418 (698)
Q Consensus 415 ~~L~ 418 (698)
++|+
T Consensus 112 ~~L~ 115 (272)
T 3rfs_A 112 KELV 115 (272)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 5553
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.48 E-value=9.9e-17 Score=173.03 Aligned_cols=336 Identities=18% Similarity=0.114 Sum_probs=199.7
Q ss_pred CcceEEEecCccchhhhcccccccccCccceeeeCC--CCc-----ccchhhcccccCceEeccccccccc-cchhh-hc
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVR-----KIPKGIKKLIHLRYLALGWNPWIKE-LPEAL-CE 362 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~-----~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~~-~~ 362 (698)
++++.|+++++...... ....+..++.|+.|+++ .+. .++..+..+++|++|++++|. +.. .+..+ ..
T Consensus 3 ~~l~~L~Ls~~~l~~~~--~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCHHH--HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred ccceehhhhhcccCchh--HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence 56899999887654433 23346677788888877 333 557778889999999999998 654 23233 34
Q ss_pred CC----CCcEeeccCCCCCc-----ccchhhhccccCCceecCCccCCCcCCc----C-CCCCCCCCccCceeccCCCCc
Q 005407 363 LC----NLQTLDVSGCDNLK-----RLPERIGELINLRHLMNSRQDDSSYMPR----G-MERLTSLRTLGSFVASRGKSS 428 (698)
Q Consensus 363 l~----~L~~L~l~~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~p~----~-i~~L~~L~~L~~~~~~~~~~~ 428 (698)
+. +|++|++++|. +. .+|..+..+++|++|++++|......+. . ....++|++|++..+.....
T Consensus 80 l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~- 157 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA- 157 (461)
T ss_dssp TCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG-
T ss_pred HhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH-
Confidence 55 69999999997 54 5688899999999999999853222122 1 22356788887765543321
Q ss_pred ccccc-cccccccccccCceeEccccCcCCCCCcchhhccccc-----ccccccceeeeeccCCCcccHHHhhccCCCCC
Q 005407 429 KACSR-LKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLK-----SKMRLVELNLWFDRTTETKGHRVVLECLQPPR 502 (698)
Q Consensus 429 ~~~~~-l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 502 (698)
+... ...+..++.|+ .+.+.+.. ..+.....+. ..++|+.|+++.+..... ....+...+..++
T Consensus 158 -~~~~l~~~l~~~~~L~-~L~L~~n~-------i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-~~~~l~~~l~~~~ 227 (461)
T 1z7x_W 158 -SCEPLASVLRAKPDFK-ELTVSNND-------INEAGVRVLCQGLKDSPCQLEALKLESCGVTSD-NCRDLCGIVASKA 227 (461)
T ss_dssp -GHHHHHHHHHHCTTCC-EEECCSSB-------CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT-HHHHHHHHHHHCT
T ss_pred -HHHHHHHHHhhCCCCC-EEECcCCC-------cchHHHHHHHHHHhcCCCCceEEEccCCCCcHH-HHHHHHHHHHhCC
Confidence 1001 11222334444 44444321 1111111111 245889999988765431 2233455566678
Q ss_pred CCceEEEEeecCCCCC--CC-CchhccccCccEEEEcCCCCCCc----CC-CCCCCCCcceeeccCCcceeeeCccccCC
Q 005407 503 SLEKLEILAYEGDTIP--PT-SNWMLSLTKLRVLTLRHCFLCEC----LP-CLGKLPCLETLTLEGMTSVKRLGNEFLGI 574 (698)
Q Consensus 503 ~L~~L~l~~~~~~~~~--~~-p~~~~~l~~L~~L~L~~c~~~~~----l~-~l~~L~~L~~L~L~~c~~l~~l~~~~~~~ 574 (698)
+|+.|++.++...... .+ +.....+++|++|++++|..... ++ .+..+++|++|++++|. +...+...+..
T Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~ 306 (461)
T 1z7x_W 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCE 306 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHH
T ss_pred CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHH
Confidence 8999998877543210 00 11122478899999999854431 22 45568899999998864 33221111100
Q ss_pred CccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCC-----cccc-
Q 005407 575 AEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALP-----DYIL- 648 (698)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp-----~~~~- 648 (698)
. .....++|++|++++|. ++.............+++|++|++++| .+.... ..+.
T Consensus 307 ~-----------------l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~ 367 (461)
T 1z7x_W 307 T-----------------LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQ 367 (461)
T ss_dssp H-----------------HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTS
T ss_pred H-----------------hccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcC
Confidence 0 01234799999999874 332211000012335799999999997 565431 1111
Q ss_pred CCCCcceEEEccCc
Q 005407 649 GSTSLDKLLIYYSR 662 (698)
Q Consensus 649 ~l~~L~~L~i~~C~ 662 (698)
..++|+.|++++|.
T Consensus 368 ~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 368 PGSVLRVLWLADCD 381 (461)
T ss_dssp TTCCCCEEECTTSC
T ss_pred CCCceEEEECCCCC
Confidence 26799999999985
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.47 E-value=4.5e-13 Score=132.86 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=47.3
Q ss_pred CCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCc
Q 005407 498 LQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMT 562 (698)
Q Consensus 498 ~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~ 562 (698)
+..+++|+.|++.++....++ +..+..+++|+.|+|++|......+ .+..+++|+.|+|++++
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVP--EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCcccceeEecCCcCcEeC--hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 445677888888777666663 4457788999999999996554333 47789999999999865
No 86
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.47 E-value=2.1e-15 Score=168.17 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=38.1
Q ss_pred CCCcceEEEecCccchhhhc-ccccccccCccceeeeCCCCc-cc-----chhhcccccCceEeccccccccccchhhhc
Q 005407 290 NETKLRSLAVPRRLYYKRTI-ASSKLFDRLTCLRSIDGPPVR-KI-----PKGIKKLIHLRYLALGWNPWIKELPEALCE 362 (698)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~-~l-----p~~i~~l~~L~~L~L~~~~~l~~lp~~~~~ 362 (698)
.+++|++|++.++....... .+......++.|+.|++.... .+ +.-+..+++|++|++++|..+..+|..+.+
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 45556666655554222111 112222344555555555221 11 111233455666666555334455555555
Q ss_pred CCCCcEeeccC
Q 005407 363 LCNLQTLDVSG 373 (698)
Q Consensus 363 l~~L~~L~l~~ 373 (698)
+++|+.|++..
T Consensus 234 ~~~L~~L~l~~ 244 (594)
T 2p1m_B 234 APQLEELGTGG 244 (594)
T ss_dssp CTTCSEEECSB
T ss_pred CCcceEccccc
Confidence 55555555443
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.46 E-value=4.5e-13 Score=134.11 Aligned_cols=62 Identities=23% Similarity=0.202 Sum_probs=45.0
Q ss_pred CCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCc
Q 005407 499 QPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMT 562 (698)
Q Consensus 499 ~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~ 562 (698)
..+++|+.|++.++....++ +..+..+++|+.|+|++|......+.+..+++|+.|+|++++
T Consensus 145 ~~l~~L~~L~L~~N~l~~l~--~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 145 TPTPKLEKLSLANNNLTELP--AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCTTCCEEECTTSCCSCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ccccCCCEEECCCCcCCccC--HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 44567777777777666663 344567889999999998766544467778889999998765
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.46 E-value=1e-12 Score=130.25 Aligned_cols=74 Identities=31% Similarity=0.419 Sum_probs=41.1
Q ss_pred ceeeeCC--CCcccchhhcccccCceEeccccccccccch-hhhcCCCCcEeeccCCCCCcccchhh-hccccCCceecC
Q 005407 321 LRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPE-ALCELCNLQTLDVSGCDNLKRLPERI-GELINLRHLMNS 396 (698)
Q Consensus 321 L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~i-~~l~~L~~L~l~ 396 (698)
++.++++ .+..+|..+. .+|++|++++|. +..+|. .+.++++|++|++++|. +..+|..+ ..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECC
Confidence 3445554 4555555443 456666666665 555553 45566666666666654 45555443 556666666665
Q ss_pred Cc
Q 005407 397 RQ 398 (698)
Q Consensus 397 ~~ 398 (698)
+|
T Consensus 94 ~n 95 (270)
T 2o6q_A 94 DN 95 (270)
T ss_dssp SS
T ss_pred CC
Confidence 55
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.45 E-value=1e-12 Score=130.47 Aligned_cols=99 Identities=32% Similarity=0.521 Sum_probs=70.0
Q ss_pred ccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchh-hhccccCCc
Q 005407 316 DRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPER-IGELINLRH 392 (698)
Q Consensus 316 ~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~ 392 (698)
..++.|+.|++. .+..++ ++..+++|++|++++|. +..++ .++.+++|++|++++|. +..+|.. ++.+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCE
Confidence 445566666666 444444 47888889999999888 77776 58888999999999886 6666554 688899999
Q ss_pred eecCCccCCCcCCc-CCCCCCCCCccCc
Q 005407 393 LMNSRQDDSSYMPR-GMERLTSLRTLGS 419 (698)
Q Consensus 393 L~l~~~~~~~~~p~-~i~~L~~L~~L~~ 419 (698)
|++++|. +..+|. .++.+++|++|++
T Consensus 114 L~L~~n~-l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 114 LVLVENQ-LQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred EECCCCc-CCccCHHHhccCCCCCEEEC
Confidence 9998884 334443 3556666666544
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.44 E-value=1.9e-12 Score=133.63 Aligned_cols=249 Identities=17% Similarity=0.066 Sum_probs=169.7
Q ss_pred chhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchh-hhccccCCceecCCccCCCcCCcC-CCC
Q 005407 333 PKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPER-IGELINLRHLMNSRQDDSSYMPRG-MER 410 (698)
Q Consensus 333 p~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~-i~~ 410 (698)
|+.++.+.. +.++.+++. ++++|..+ ..++++|+|++|. ++.+|.. +.+|++|++|++++|.....+|.+ +.+
T Consensus 3 p~~~C~C~~-~~v~C~~~~-Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~ 77 (350)
T 4ay9_X 3 HHRICHCSN-RVFLCQESK-VTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN 77 (350)
T ss_dssp CCSSSEEET-TEEEEESTT-CCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS
T ss_pred CCCccEeeC-CEEEecCCC-CCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc
Confidence 444555543 567777777 99999876 3689999999987 8899874 799999999999999666666643 455
Q ss_pred CCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCccc
Q 005407 411 LTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKG 490 (698)
Q Consensus 411 L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 490 (698)
+++++++..... .++. ......+..+++|+.|+++.+......
T Consensus 78 L~~l~~~l~~~~---------------N~l~---------------------~l~~~~f~~l~~L~~L~l~~n~l~~~~- 120 (350)
T 4ay9_X 78 LPKLHEIRIEKA---------------NNLL---------------------YINPEAFQNLPNLQYLLISNTGIKHLP- 120 (350)
T ss_dssp CTTCCEEEEEEE---------------TTCC---------------------EECTTSBCCCTTCCEEEEEEECCSSCC-
T ss_pred chhhhhhhcccC---------------Cccc---------------------ccCchhhhhccccccccccccccccCC-
Confidence 666554322110 0000 001123455667777777777643211
Q ss_pred HHHhhccCCCCCCCceEEEEeec-CCCCCCCCchhccc-cCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceeeeC
Q 005407 491 HRVVLECLQPPRSLEKLEILAYE-GDTIPPTSNWMLSL-TKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKRLG 568 (698)
Q Consensus 491 ~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~p~~~~~l-~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l~ 568 (698)
........++..|.+.++. ...++ +..+..+ ..++.|+|++|......+.....++|+.|.+.++..++.++
T Consensus 121 ----~~~~~~~~~l~~l~l~~~~~i~~l~--~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 121 ----DVHKIHSLQKVLLDIQDNINIHTIE--RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP 194 (350)
T ss_dssp ----CCTTCCBSSCEEEEEESCTTCCEEC--TTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCC
T ss_pred ----chhhcccchhhhhhhcccccccccc--ccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCC
Confidence 0111223345666665532 22332 2233333 46899999999765544556667889999999888899998
Q ss_pred ccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCcccc
Q 005407 569 NEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYIL 648 (698)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~ 648 (698)
...+ ..+++|+.|++++ +.++.++. + .+.+|++|.+.+|.+++.+|. +.
T Consensus 195 ~~~f----------------------~~l~~L~~LdLs~-N~l~~lp~----~---~~~~L~~L~~l~~~~l~~lP~-l~ 243 (350)
T 4ay9_X 195 NDVF----------------------HGASGPVILDISR-TRIHSLPS----Y---GLENLKKLRARSTYNLKKLPT-LE 243 (350)
T ss_dssp TTTT----------------------TTEECCSEEECTT-SCCCCCCS----S---SCTTCCEEECTTCTTCCCCCC-TT
T ss_pred HHHh----------------------ccCcccchhhcCC-CCcCccCh----h---hhccchHhhhccCCCcCcCCC-ch
Confidence 7543 4689999999998 47888875 2 578899999999999999995 67
Q ss_pred CCCCcceEEEcc
Q 005407 649 GSTSLDKLLIYY 660 (698)
Q Consensus 649 ~l~~L~~L~i~~ 660 (698)
.+++|+.+++.+
T Consensus 244 ~l~~L~~l~l~~ 255 (350)
T 4ay9_X 244 KLVALMEASLTY 255 (350)
T ss_dssp TCCSCCEEECSC
T ss_pred hCcChhhCcCCC
Confidence 799999999864
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=3e-14 Score=146.53 Aligned_cols=218 Identities=18% Similarity=0.196 Sum_probs=143.4
Q ss_pred ceEEEEEccCCCcccCCcccCCC--CcceEEEecCccchhhhcccccccccCccceeeeCCCC--c--ccchhhcccccC
Q 005407 269 ARHLMIMGEMSKEVPFPSFVYNE--TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGPPV--R--KIPKGIKKLIHL 342 (698)
Q Consensus 269 ~~~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~--~--~lp~~i~~l~~L 342 (698)
.+++.+..+... +..+..+ ++++.|.+.++......+ . +.++++|+.|+++.. . .+|..+..+++|
T Consensus 49 ~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~---~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 49 WQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLA---E-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp SSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCC---S-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred heeeccccccCC----HHHHHhhhhccceEEEcCCccccccch---h-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 455555544331 2333444 789999999886544332 2 457899999999833 2 267778999999
Q ss_pred ceEecccccccc-ccchhhhcCCCCcEeeccCCCCCc--ccchhhhccccCCceecCCccCCCc--CCcCCCCCC-CCCc
Q 005407 343 RYLALGWNPWIK-ELPEALCELCNLQTLDVSGCDNLK--RLPERIGELINLRHLMNSRQDDSSY--MPRGMERLT-SLRT 416 (698)
Q Consensus 343 ~~L~L~~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~--~p~~i~~L~-~L~~ 416 (698)
++|++++|. +. ..|..++.+++|++|++++|..+. .+|..+..+++|++|++++|..+.. ++..++.++ +|++
T Consensus 121 ~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 121 QNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp SEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 999999998 55 678889999999999999996566 4788889999999999998833322 222233333 3333
Q ss_pred cCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhc
Q 005407 417 LGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLE 496 (698)
Q Consensus 417 L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 496 (698)
| +++.+... .....+..
T Consensus 200 L-------------------------------------------------------------~l~~~~~~--~~~~~l~~ 216 (336)
T 2ast_B 200 L-------------------------------------------------------------NLSGYRKN--LQKSDLST 216 (336)
T ss_dssp E-------------------------------------------------------------ECCSCGGG--SCHHHHHH
T ss_pred E-------------------------------------------------------------EeCCCccc--CCHHHHHH
Confidence 3 22222100 00112222
Q ss_pred cCCCCCCCceEEEEeecC-C-CCCCCCchhccccCccEEEEcCCCCCC--cCCCCCCCCCcceeeccCC
Q 005407 497 CLQPPRSLEKLEILAYEG-D-TIPPTSNWMLSLTKLRVLTLRHCFLCE--CLPCLGKLPCLETLTLEGM 561 (698)
Q Consensus 497 ~~~~~~~L~~L~l~~~~~-~-~~~~~p~~~~~l~~L~~L~L~~c~~~~--~l~~l~~L~~L~~L~L~~c 561 (698)
.+..+++|+.|++.++.. . .. +..+..+++|++|++++|.... .+..++.+++|+.|++++|
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDC---FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGG---GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHhhCCCCCEEeCCCCCcCCHHH---HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 333456677777766652 2 22 4567788999999999986332 2235677899999999887
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.42 E-value=4.7e-15 Score=155.65 Aligned_cols=91 Identities=20% Similarity=0.172 Sum_probs=62.7
Q ss_pred cccccccccceeeeeccCCCcccHHHhhc-cCCCCCCCceEEEEeecC-----CCCCCCCchhccccCccEEEEcCCCCC
Q 005407 468 DLKSKMRLVELNLWFDRTTETKGHRVVLE-CLQPPRSLEKLEILAYEG-----DTIPPTSNWMLSLTKLRVLTLRHCFLC 541 (698)
Q Consensus 468 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~-----~~~~~~p~~~~~l~~L~~L~L~~c~~~ 541 (698)
.+..+++|+.|+++.+.+... +...+.. .+..+++|+.|++.++.. ..+ |.++..+++|++|+|++|...
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~-g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l---~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPE-GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL---AIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHH-HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH---HHHGGGCTTCCEEECTTCCCC
T ss_pred HHHhCCCcCEEECcCCCCCHh-HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH---HHHHccCCCcCEEECCCCCCc
Confidence 455667888888887764321 1122333 667788899999987765 234 667778899999999998754
Q ss_pred Cc----CC-CC--CCCCCcceeeccCCc
Q 005407 542 EC----LP-CL--GKLPCLETLTLEGMT 562 (698)
Q Consensus 542 ~~----l~-~l--~~L~~L~~L~L~~c~ 562 (698)
.. ++ .+ +.+++|++|+|++|.
T Consensus 258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 258 ARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred hhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 32 22 33 458899999999875
No 93
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.39 E-value=1.1e-14 Score=162.39 Aligned_cols=357 Identities=13% Similarity=0.033 Sum_probs=192.4
Q ss_pred CcceEEEEEccCCCcccCCccc-CCCCcceEEEecCccchhhhcccccccccCccceeeeCCCCc-------ccchhhcc
Q 005407 267 WKARHLMIMGEMSKEVPFPSFV-YNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGPPVR-------KIPKGIKK 338 (698)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------~lp~~i~~ 338 (698)
..++++.+.++..... ....+ ..+++|+.|.+.++...... .....+.++++|++|++.... .++.....
T Consensus 105 ~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTD-GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEEHH-HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCCHH-HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 3566777776543211 11222 24678888888877322111 122334567788888877221 13333346
Q ss_pred cccCceEeccccc-cc--cccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccC------CCcCCcCCC
Q 005407 339 LIHLRYLALGWNP-WI--KELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDD------SSYMPRGME 409 (698)
Q Consensus 339 l~~L~~L~L~~~~-~l--~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~------~~~~p~~i~ 409 (698)
+++|++|++++|. .+ ..++..+.++++|++|++++|..+..+|..+..+++|++|+++.+.. +..++..++
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 6788888888775 11 12333345678888888888866777777788888888888765532 122333556
Q ss_pred CCCCCCccC-ceeccCCCCccccccccc-ccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCC
Q 005407 410 RLTSLRTLG-SFVASRGKSSKACSRLKS-LNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTE 487 (698)
Q Consensus 410 ~L~~L~~L~-~~~~~~~~~~~~~~~l~~-l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 487 (698)
++++|+.|. ....... .+.. +..+..|+ .+.+.... + ........+..+++|+.|.+..+.
T Consensus 263 ~~~~L~~Ls~~~~~~~~-------~l~~~~~~~~~L~-~L~L~~~~-l-----~~~~l~~~~~~~~~L~~L~l~~~~--- 325 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPA-------YLPAVYSVCSRLT-TLNLSYAT-V-----QSYDLVKLLCQCPKLQRLWVLDYI--- 325 (594)
T ss_dssp TCTTCCEEECCBTCCGG-------GGGGGHHHHTTCC-EEECTTCC-C-----CHHHHHHHHTTCTTCCEEEEEGGG---
T ss_pred cCCCcccccCCcccchh-------hHHHHHHhhCCCC-EEEccCCC-C-----CHHHHHHHHhcCCCcCEEeCcCcc---
Confidence 677777762 2111110 1111 11333344 45544332 1 112222234567888888888652
Q ss_pred cccHHHhhccCCCCCCCceEEEEeec------CCCCC--CCCchhccccCccEEEEcCCCCCCc-CCCCC-CCCCcceee
Q 005407 488 TKGHRVVLECLQPPRSLEKLEILAYE------GDTIP--PTSNWMLSLTKLRVLTLRHCFLCEC-LPCLG-KLPCLETLT 557 (698)
Q Consensus 488 ~~~~~~~~~~~~~~~~L~~L~l~~~~------~~~~~--~~p~~~~~l~~L~~L~L~~c~~~~~-l~~l~-~L~~L~~L~ 557 (698)
....+......+++|+.|++.++. ...+. .+......+++|+.|.+..+..... +..+. .+++|+.|+
T Consensus 326 --~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~ 403 (594)
T 2p1m_B 326 --EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFR 403 (594)
T ss_dssp --HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEE
T ss_pred --CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeE
Confidence 122222222346788888885531 11110 0011112478889996655443221 12232 478999999
Q ss_pred cc-----CCcceeeeCcc-ccCCCccccccccccccccccccCcCCCccccccccc-------------ccccccCcccc
Q 005407 558 LE-----GMTSVKRLGNE-FLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLL-------------MTNWEEWDDCE 618 (698)
Q Consensus 558 L~-----~c~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-------------~~~l~~~~~~~ 618 (698)
+. +|..++..+.. .+.. ....+++|+.|++.+ +++|+.+....
T Consensus 404 L~~~~~~~~~~l~~~~~~~~~~~------------------l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~ 465 (594)
T 2p1m_B 404 LCIIEPKAPDYLTLEPLDIGFGA------------------IVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAF 465 (594)
T ss_dssp EEESSTTCCCTTTCCCTHHHHHH------------------HHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEES
T ss_pred eecccCCCcccccCCchhhHHHH------------------HHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccC
Confidence 98 56655544321 0000 024577888888865 23333322100
Q ss_pred cC---CCc----CCCCccceeeeccCCCCCC--CCccccCCCCcceEEEccCcc
Q 005407 619 IA---GGK----TIMPRLRHLSICWSPELKA--LPDYILGSTSLDKLLIYYSRH 663 (698)
Q Consensus 619 ~~---~~~----~~~~~L~~L~l~~c~~L~~--lp~~~~~l~~L~~L~i~~C~~ 663 (698)
.. .+. ..+++|++|++++|+. .. +......+++|+.|++++|+.
T Consensus 466 ~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 466 AGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 00 000 2478899999998864 32 122334578999999999975
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.36 E-value=1.6e-12 Score=130.16 Aligned_cols=174 Identities=21% Similarity=0.206 Sum_probs=100.0
Q ss_pred hcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCC
Q 005407 336 IKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLR 415 (698)
Q Consensus 336 i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 415 (698)
+..+.+|++|++++|. +..+|. +..+++|++|++++|. +..++. +..+++|++|++++| .+..+| .++.+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCC
T ss_pred hhhcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCC-cCCCCh-hhccCCCCC
Confidence 3455566666666665 555554 5666666666666654 555554 566666666666655 233333 245555555
Q ss_pred ccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhh
Q 005407 416 TLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVL 495 (698)
Q Consensus 416 ~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 495 (698)
.|++..+.... +. .+..+++|+.|+++.+.....
T Consensus 116 ~L~L~~n~i~~-------~~--------------------------------~l~~l~~L~~L~l~~n~l~~~------- 149 (291)
T 1h6t_A 116 SLSLEHNGISD-------IN--------------------------------GLVHLPQLESLYLGNNKITDI------- 149 (291)
T ss_dssp EEECTTSCCCC-------CG--------------------------------GGGGCTTCCEEECCSSCCCCC-------
T ss_pred EEECCCCcCCC-------Ch--------------------------------hhcCCCCCCEEEccCCcCCcc-------
Confidence 55433221110 00 112233444444444432211
Q ss_pred ccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceeee
Q 005407 496 ECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKRL 567 (698)
Q Consensus 496 ~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l 567 (698)
..+..+++|+.|++.++....+ +. +..+++|+.|++++|. +..++.+..+++|+.|++++++ +...
T Consensus 150 ~~l~~l~~L~~L~L~~N~l~~~---~~-l~~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n~-i~~~ 215 (291)
T 1h6t_A 150 TVLSRLTKLDTLSLEDNQISDI---VP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE-CLNK 215 (291)
T ss_dssp GGGGGCTTCSEEECCSSCCCCC---GG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEEE-EECC
T ss_pred hhhccCCCCCEEEccCCccccc---hh-hcCCCccCEEECCCCc-CCCChhhccCCCCCEEECcCCc-ccCC
Confidence 2344567788888877766665 33 7788999999999985 4456778889999999998865 4433
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.35 E-value=3.4e-12 Score=140.42 Aligned_cols=170 Identities=21% Similarity=0.221 Sum_probs=103.1
Q ss_pred hcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCC
Q 005407 336 IKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLR 415 (698)
Q Consensus 336 i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 415 (698)
+..|.+|++|++++|. +..+|. +..+++|+.|+|++|. +..+|. +..+++|+.|++++| .+..+| .++.+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCTT-GGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCC-CCCChH-HccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCC
Confidence 4566777777777776 666664 7777777777777765 556655 677777777777766 344443 456666666
Q ss_pred ccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhh
Q 005407 416 TLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVL 495 (698)
Q Consensus 416 ~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 495 (698)
.|++..+.... +. .+..+++|+.|+++.+.+...
T Consensus 113 ~L~Ls~N~l~~-------l~--------------------------------~l~~l~~L~~L~Ls~N~l~~l------- 146 (605)
T 1m9s_A 113 SLSLEHNGISD-------IN--------------------------------GLVHLPQLESLYLGNNKITDI------- 146 (605)
T ss_dssp EEECTTSCCCC-------CG--------------------------------GGGGCTTCSEEECCSSCCCCC-------
T ss_pred EEEecCCCCCC-------Cc--------------------------------cccCCCccCEEECCCCccCCc-------
Confidence 66543222111 01 122233445555554443221
Q ss_pred ccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCc
Q 005407 496 ECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMT 562 (698)
Q Consensus 496 ~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~ 562 (698)
..+..+++|+.|++.++....+ +. +..+++|+.|+|++|.. ..++.+..|++|+.|+|++|.
T Consensus 147 ~~l~~l~~L~~L~Ls~N~l~~~---~~-l~~l~~L~~L~Ls~N~i-~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 147 TVLSRLTKLDTLSLEDNQISDI---VP-LAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GGGGSCTTCSEEECCSSCCCCC---GG-GTTCTTCCEEECCSSCC-CBCGGGTTCTTCSEEECCSEE
T ss_pred hhhcccCCCCEEECcCCcCCCc---hh-hccCCCCCEEECcCCCC-CCChHHccCCCCCEEEccCCc
Confidence 2344566777777776665554 33 66778888888888743 345667778888888887765
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.35 E-value=1.4e-12 Score=132.20 Aligned_cols=200 Identities=16% Similarity=0.065 Sum_probs=114.2
Q ss_pred cceeeeCC--CC-cccchhh--cccccCceEeccccccccc-cc----hhhhcCCCCcEeeccCCCCCcccchhhhcccc
Q 005407 320 CLRSIDGP--PV-RKIPKGI--KKLIHLRYLALGWNPWIKE-LP----EALCELCNLQTLDVSGCDNLKRLPERIGELIN 389 (698)
Q Consensus 320 ~L~~L~l~--~~-~~lp~~i--~~l~~L~~L~L~~~~~l~~-lp----~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~ 389 (698)
.|+.|+++ .+ ...|..+ ..+.+|++|++++|. +.. .| ..+..+++|++|++++|......|..++.+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 35555544 22 2344444 666777777777766 443 22 22345667777777776633333345666777
Q ss_pred CCceecCCccCCCc--CC--cCCCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhh
Q 005407 390 LRHLMNSRQDDSSY--MP--RGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDE 465 (698)
Q Consensus 390 L~~L~l~~~~~~~~--~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~ 465 (698)
|++|++++|..... ++ ..++.+++|++|++..+.... + ....
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----------l------------------------~~~~ 216 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET----------P------------------------TGVC 216 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC----------H------------------------HHHH
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc----------h------------------------HHHH
Confidence 77777766643221 21 223455666666543322211 0 0000
Q ss_pred cccccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC
Q 005407 466 KVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP 545 (698)
Q Consensus 466 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~ 545 (698)
...+..+++|+.|+++.+...... ......+..+++|+.|++.++....+ |.++. ++|+.|+|++|... .+|
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~~--p~~~~~~~~~~~L~~L~Ls~N~l~~l---p~~~~--~~L~~L~Ls~N~l~-~~~ 288 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRATV--NPSAPRCMWSSALNSLNLSFAGLEQV---PKGLP--AKLRVLDLSSNRLN-RAP 288 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCCC--CSCCSSCCCCTTCCCEECCSSCCCSC---CSCCC--SCCSCEECCSCCCC-SCC
T ss_pred HHHHhcCCCCCEEECCCCCCCccc--hhhHHhccCcCcCCEEECCCCCCCch---hhhhc--CCCCEEECCCCcCC-CCc
Confidence 011234566777777776643210 00011222247899999988887766 66664 79999999999644 556
Q ss_pred CCCCCCCcceeeccCCc
Q 005407 546 CLGKLPCLETLTLEGMT 562 (698)
Q Consensus 546 ~l~~L~~L~~L~L~~c~ 562 (698)
.+..+++|+.|+|++++
T Consensus 289 ~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 289 QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CTTSCCCCSCEECSSTT
T ss_pred hhhhCCCccEEECcCCC
Confidence 67889999999999864
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.34 E-value=2.1e-12 Score=130.96 Aligned_cols=83 Identities=12% Similarity=0.030 Sum_probs=56.9
Q ss_pred ccccCceEeccccccccccchhh--hcCCCCcEeeccCCCCCcccc----hhhhccccCCceecCCccCCCcCCcCCCCC
Q 005407 338 KLIHLRYLALGWNPWIKELPEAL--CELCNLQTLDVSGCDNLKRLP----ERIGELINLRHLMNSRQDDSSYMPRGMERL 411 (698)
Q Consensus 338 ~l~~L~~L~L~~~~~l~~lp~~~--~~l~~L~~L~l~~~~~l~~lp----~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L 411 (698)
.+.+|++|++++|......|..+ +.+++|++|++++|......| ..+..+++|++|++++|......|..++.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 35668888888888334566666 788888888888887433333 234568888888888885444444566777
Q ss_pred CCCCccCce
Q 005407 412 TSLRTLGSF 420 (698)
Q Consensus 412 ~~L~~L~~~ 420 (698)
++|++|++.
T Consensus 169 ~~L~~L~Ls 177 (310)
T 4glp_A 169 PALTSLDLS 177 (310)
T ss_dssp TTCCEEECC
T ss_pred CCCCEEECC
Confidence 777777554
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.34 E-value=1.3e-11 Score=120.83 Aligned_cols=169 Identities=22% Similarity=0.244 Sum_probs=107.4
Q ss_pred ceeeeCC--CCcccchhhcccccCceEeccccccccccch-hhhcCCCCcEeeccCCCCCcccc-hhhhccccCCceecC
Q 005407 321 LRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPE-ALCELCNLQTLDVSGCDNLKRLP-ERIGELINLRHLMNS 396 (698)
Q Consensus 321 L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~ 396 (698)
.+.+++. .+..+|..+. .+|++|++++|. +..++. .+.++++|++|++++|. +..++ ..+..+++|++|+++
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECC
Confidence 3445555 5666776554 577888888887 665544 57778888888888876 44444 346778888888887
Q ss_pred CccCCCcCC-cCCCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccc
Q 005407 397 RQDDSSYMP-RGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRL 475 (698)
Q Consensus 397 ~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L 475 (698)
+|. +..+| ..++.+++|++|++..+.... +
T Consensus 92 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------~-------------------------------- 122 (251)
T 3m19_A 92 NNQ-LASLPLGVFDHLTQLDKLYLGGNQLKS----------------L-------------------------------- 122 (251)
T ss_dssp TSC-CCCCCTTTTTTCTTCCEEECCSSCCCC----------------C--------------------------------
T ss_pred CCc-ccccChhHhcccCCCCEEEcCCCcCCC----------------c--------------------------------
Confidence 773 33333 334556666655443211110 0
Q ss_pred cceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC-CCCCCCCcc
Q 005407 476 VELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP-CLGKLPCLE 554 (698)
Q Consensus 476 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~ 554 (698)
....+..+++|+.|++.++....++ +..+..+++|+.|+|++|......+ .+..+++|+
T Consensus 123 ------------------~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 123 ------------------PSGVFDRLTKLKELRLNTNQLQSIP--AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp ------------------CTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ------------------ChhHhccCCcccEEECcCCcCCccC--HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 0011233456677777666665553 3467788999999999987655444 577889999
Q ss_pred eeeccCCc
Q 005407 555 TLTLEGMT 562 (698)
Q Consensus 555 ~L~L~~c~ 562 (698)
.|+|++++
T Consensus 183 ~L~l~~N~ 190 (251)
T 3m19_A 183 TITLFGNQ 190 (251)
T ss_dssp EEECCSCC
T ss_pred EEEeeCCc
Confidence 99998865
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.29 E-value=2.9e-13 Score=141.93 Aligned_cols=245 Identities=16% Similarity=0.097 Sum_probs=152.0
Q ss_pred CCcccCCCCcceEEEecCccchhhhc-ccccccccCccceeeeCCCC--c----ccchhh-------cccccCceEeccc
Q 005407 284 FPSFVYNETKLRSLAVPRRLYYKRTI-ASSKLFDRLTCLRSIDGPPV--R----KIPKGI-------KKLIHLRYLALGW 349 (698)
Q Consensus 284 ~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~--~----~lp~~i-------~~l~~L~~L~L~~ 349 (698)
+...+..+++|+.|+++++....... .+...+.+++.|++|+++.. . .+|.++ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 44556677889999999886654332 12344677888899888732 3 335444 6789999999999
Q ss_pred cccccc-----cchhhhcCCCCcEeeccCCCCCc----ccchhhhcc---------ccCCceecCCccCC-CcCC---cC
Q 005407 350 NPWIKE-----LPEALCELCNLQTLDVSGCDNLK----RLPERIGEL---------INLRHLMNSRQDDS-SYMP---RG 407 (698)
Q Consensus 350 ~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~----~lp~~i~~l---------~~L~~L~l~~~~~~-~~~p---~~ 407 (698)
|. +.. +|..+..+++|++|+|++|.... .++..+..+ ++|++|++++|... ..+| ..
T Consensus 104 n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred Cc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 98 665 78888899999999999987321 233444445 88999999888432 1222 23
Q ss_pred CCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCC
Q 005407 408 MERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTE 487 (698)
Q Consensus 408 i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 487 (698)
+..+++|++|++..+..... + ........+..+++|+.|+++.+.+..
T Consensus 183 l~~~~~L~~L~L~~n~l~~~--g------------------------------~~~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPE--G------------------------------IEHLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHH--H------------------------------HHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred HHhCCCcCEEECcCCCCCHh--H------------------------------HHHHHHHHhhcCCCccEEECcCCCCCc
Confidence 33444555554332211100 0 000111245566777888887766321
Q ss_pred cccHHHhhccCCCCCCCceEEEEeecCCCC--CCCCchhc--cccCccEEEEcCCCCCC----cCC-CC-CCCCCcceee
Q 005407 488 TKGHRVVLECLQPPRSLEKLEILAYEGDTI--PPTSNWML--SLTKLRVLTLRHCFLCE----CLP-CL-GKLPCLETLT 557 (698)
Q Consensus 488 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~p~~~~--~l~~L~~L~L~~c~~~~----~l~-~l-~~L~~L~~L~ 557 (698)
.+...++..+..+++|+.|++.++..... ..+|.++. .+++|+.|+|++|.... .++ .+ .++++|++|+
T Consensus 231 -~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 231 -LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp -HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred -HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 11244556667778888888877765432 00134442 37889999998887655 244 34 4578899999
Q ss_pred ccCCc
Q 005407 558 LEGMT 562 (698)
Q Consensus 558 L~~c~ 562 (698)
+++|.
T Consensus 310 l~~N~ 314 (386)
T 2ca6_A 310 LNGNR 314 (386)
T ss_dssp CTTSB
T ss_pred ccCCc
Confidence 98865
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.29 E-value=2.5e-11 Score=118.85 Aligned_cols=176 Identities=19% Similarity=0.187 Sum_probs=124.5
Q ss_pred ccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCc
Q 005407 340 IHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGS 419 (698)
Q Consensus 340 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 419 (698)
...++++++++. +..+|..+. .+|++|++++|......|..++++++|++|++++|......|..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 567889999998 999998665 69999999998843444456899999999999998444434444677777777754
Q ss_pred eeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhhccCC
Q 005407 420 FVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVLECLQ 499 (698)
Q Consensus 420 ~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 499 (698)
..+.... + ....+.
T Consensus 91 ~~n~l~~----------------~--------------------------------------------------~~~~~~ 104 (251)
T 3m19_A 91 ANNQLAS----------------L--------------------------------------------------PLGVFD 104 (251)
T ss_dssp TTSCCCC----------------C--------------------------------------------------CTTTTT
T ss_pred CCCcccc----------------c--------------------------------------------------ChhHhc
Confidence 3211110 0 001223
Q ss_pred CCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCcceeeeCccccCCCccc
Q 005407 500 PPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDD 578 (698)
Q Consensus 500 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~ 578 (698)
.+++|+.|++.++....++ +..+..+++|+.|+|++|......+ .++.+++|++|+|+++. ++.++...+
T Consensus 105 ~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~------ 175 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLP--SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAF------ 175 (251)
T ss_dssp TCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT------
T ss_pred ccCCCCEEEcCCCcCCCcC--hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHH------
Confidence 4567777777777666663 4456789999999999996655444 58899999999999865 666654332
Q ss_pred cccccccccccccccCcCCCccccccccccc
Q 005407 579 QARGDQAETASSIIRDTAFPRLETLIFLLMT 609 (698)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 609 (698)
..+++|+.|++.+++
T Consensus 176 ----------------~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 176 ----------------DRLGKLQTITLFGNQ 190 (251)
T ss_dssp ----------------TTCTTCCEEECCSCC
T ss_pred ----------------hCCCCCCEEEeeCCc
Confidence 467888888888753
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.28 E-value=4.9e-12 Score=124.53 Aligned_cols=169 Identities=20% Similarity=0.150 Sum_probs=112.1
Q ss_pred CccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceec
Q 005407 318 LTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMN 395 (698)
Q Consensus 318 l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l 395 (698)
+..+..+++. .+..++ .+..+.+|++|++++|. +..+| .+..+++|++|++++|. +..+|. ++.+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 4444444444 555666 57788888888888887 88888 58888888888888876 777776 888888888888
Q ss_pred CCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccc
Q 005407 396 SRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRL 475 (698)
Q Consensus 396 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L 475 (698)
++| .+..+|.... ++|+.|++.
T Consensus 93 ~~N-~l~~l~~~~~--~~L~~L~L~------------------------------------------------------- 114 (263)
T 1xeu_A 93 NRN-RLKNLNGIPS--ACLSRLFLD------------------------------------------------------- 114 (263)
T ss_dssp CSS-CCSCCTTCCC--SSCCEEECC-------------------------------------------------------
T ss_pred CCC-ccCCcCcccc--CcccEEEcc-------------------------------------------------------
Confidence 887 4444443221 444444322
Q ss_pred cceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcce
Q 005407 476 VELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLET 555 (698)
Q Consensus 476 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~ 555 (698)
.+.... ...+..+++|+.|++.++....+ + .+..+++|+.|++++|.... ++.+..+++|+.
T Consensus 115 ------~N~l~~-------~~~l~~l~~L~~L~Ls~N~i~~~---~-~l~~l~~L~~L~L~~N~i~~-~~~l~~l~~L~~ 176 (263)
T 1xeu_A 115 ------NNELRD-------TDSLIHLKNLEILSIRNNKLKSI---V-MLGFLSKLEVLDLHGNEITN-TGGLTRLKKVNW 176 (263)
T ss_dssp ------SSCCSB-------SGGGTTCTTCCEEECTTSCCCBC---G-GGGGCTTCCEEECTTSCCCB-CTTSTTCCCCCE
T ss_pred ------CCccCC-------ChhhcCcccccEEECCCCcCCCC---h-HHccCCCCCEEECCCCcCcc-hHHhccCCCCCE
Confidence 211110 01233455666777666665555 4 57778999999999986544 477888999999
Q ss_pred eeccCCcceeeeC
Q 005407 556 LTLEGMTSVKRLG 568 (698)
Q Consensus 556 L~L~~c~~l~~l~ 568 (698)
|++++++ +...+
T Consensus 177 L~l~~N~-~~~~~ 188 (263)
T 1xeu_A 177 IDLTGQK-CVNEP 188 (263)
T ss_dssp EEEEEEE-EECCC
T ss_pred EeCCCCc-ccCCc
Confidence 9999865 44333
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.27 E-value=8.3e-12 Score=117.22 Aligned_cols=152 Identities=18% Similarity=0.174 Sum_probs=104.7
Q ss_pred hcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCC
Q 005407 336 IKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLR 415 (698)
Q Consensus 336 i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 415 (698)
...+.+|++|++++|. +..+| .+..+++|++|++++|. +..++ .+..+++|++|++++|......|..++.+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 4678889999999988 88888 58899999999999984 66665 688899999999988854444566677777777
Q ss_pred ccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeeccCCCcccHHHhh
Q 005407 416 TLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDRTTETKGHRVVL 495 (698)
Q Consensus 416 ~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 495 (698)
+|++..+.... ..+
T Consensus 116 ~L~Ls~n~i~~------------------------------------------------------------------~~~ 129 (197)
T 4ezg_A 116 LLDISHSAHDD------------------------------------------------------------------SIL 129 (197)
T ss_dssp EEECCSSBCBG------------------------------------------------------------------GGH
T ss_pred EEEecCCccCc------------------------------------------------------------------HhH
Confidence 66543221110 001
Q ss_pred ccCCCCCCCceEEEEeec-CCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCc
Q 005407 496 ECLQPPRSLEKLEILAYE-GDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMT 562 (698)
Q Consensus 496 ~~~~~~~~L~~L~l~~~~-~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~ 562 (698)
..+..+++|+.|++.++. ...+ | .+..+++|+.|++++|.. ..++.+..+++|+.|+++++.
T Consensus 130 ~~l~~l~~L~~L~L~~n~~i~~~---~-~l~~l~~L~~L~l~~n~i-~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 130 TKINTLPKVNSIDLSYNGAITDI---M-PLKTLPELKSLNIQFDGV-HDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp HHHTTCSSCCEEECCSCTBCCCC---G-GGGGCSSCCEEECTTBCC-CCCTTGGGCSSCCEEEECBC-
T ss_pred HHHhhCCCCCEEEccCCCCcccc---H-hhcCCCCCCEEECCCCCC-cChHHhccCCCCCEEEeeCcc
Confidence 122334556666666654 4444 4 567788888888888854 345577788888888888753
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.22 E-value=3.3e-11 Score=120.62 Aligned_cols=167 Identities=21% Similarity=0.204 Sum_probs=84.2
Q ss_pred CccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceec
Q 005407 318 LTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMN 395 (698)
Q Consensus 318 l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l 395 (698)
++.|+.|+++ .+..++ ++..+++|++|++++|. +..++. ++++++|++|++++|. +..+|. ++.+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEEC
Confidence 3344444444 333343 25555556666666555 555555 5555666666665554 444443 555556666666
Q ss_pred CCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccc
Q 005407 396 SRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRL 475 (698)
Q Consensus 396 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L 475 (698)
++| .+..+ ..++.+++|+.|++..+.... +. .+..+++|
T Consensus 120 ~~n-~i~~~-~~l~~l~~L~~L~l~~n~l~~-------~~--------------------------------~l~~l~~L 158 (291)
T 1h6t_A 120 EHN-GISDI-NGLVHLPQLESLYLGNNKITD-------IT--------------------------------VLSRLTKL 158 (291)
T ss_dssp TTS-CCCCC-GGGGGCTTCCEEECCSSCCCC-------CG--------------------------------GGGGCTTC
T ss_pred CCC-cCCCC-hhhcCCCCCCEEEccCCcCCc-------ch--------------------------------hhccCCCC
Confidence 555 23333 234444555554433221111 00 12223334
Q ss_pred cceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCC
Q 005407 476 VELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLC 541 (698)
Q Consensus 476 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~ 541 (698)
+.|+++.+..... . .+..+++|+.|++.++....+ | .+..+++|+.|++++|...
T Consensus 159 ~~L~L~~N~l~~~------~-~l~~l~~L~~L~L~~N~i~~l---~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 159 DTLSLEDNQISDI------V-PLAGLTKLQNLYLSKNHISDL---R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp SEEECCSSCCCCC------G-GGTTCTTCCEEECCSSCCCBC---G-GGTTCTTCSEEEEEEEEEE
T ss_pred CEEEccCCccccc------h-hhcCCCccCEEECCCCcCCCC---h-hhccCCCCCEEECcCCccc
Confidence 4444444432211 0 144566777777777666555 4 3667888888888887543
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.22 E-value=7.7e-11 Score=128.12 Aligned_cols=67 Identities=24% Similarity=0.318 Sum_probs=48.0
Q ss_pred cCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccC
Q 005407 341 HLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLG 418 (698)
Q Consensus 341 ~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 418 (698)
+|++|++++|. +..+|..+. ++|++|++++|. +..+| +.+++|++|++++| .+..+|. +++ +|+.|+
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEE
T ss_pred CccEEEeCCCC-CCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEE
Confidence 78888888887 777887653 788888888876 67787 45778888888887 4444665 443 444443
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=7.8e-13 Score=144.61 Aligned_cols=118 Identities=21% Similarity=0.250 Sum_probs=68.9
Q ss_pred CCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC-CCCCCCCcceeeccCCcceeeeCccccCCCcccccc
Q 005407 503 SLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP-CLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQAR 581 (698)
Q Consensus 503 ~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~-~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~ 581 (698)
.|+.|++.++....+ |. ++.+++|+.|+|++|... .+| .++.+++|+.|+|+++. ++.+| .
T Consensus 442 ~L~~L~Ls~n~l~~l---p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~----------- 503 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL---CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LENVD-G----------- 503 (567)
T ss_dssp TCSEEECTTSCCSSC---CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC-CCCCG-G-----------
T ss_pred CceEEEecCCCCCCC---cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC-CCCCc-c-----------
Confidence 356666665555544 54 666777777777777544 333 56667777777777643 44443 1
Q ss_pred ccccccccccccCcCCCcccccccccccccccC--cccccCCCcCCCCccceeeeccCCCCCCCCcccc----CCCCcce
Q 005407 582 GDQAETASSIIRDTAFPRLETLIFLLMTNWEEW--DDCEIAGGKTIMPRLRHLSICWSPELKALPDYIL----GSTSLDK 655 (698)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~----~l~~L~~ 655 (698)
...+++|+.|++++ +.++.+ |. .+..+++|+.|+++++ .+..+|+... .+++|+.
T Consensus 504 ------------l~~l~~L~~L~Ls~-N~l~~~~~p~-----~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 504 ------------VANLPRLQELLLCN-NRLQQSAAIQ-----PLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp ------------GTTCSSCCEEECCS-SCCCSSSTTG-----GGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSE
T ss_pred ------------cCCCCCCcEEECCC-CCCCCCCCcH-----HHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCc
Confidence 24566666666666 345544 32 3446777777777774 4666654332 2566666
Q ss_pred EE
Q 005407 656 LL 657 (698)
Q Consensus 656 L~ 657 (698)
|+
T Consensus 565 L~ 566 (567)
T 1dce_A 565 IL 566 (567)
T ss_dssp EE
T ss_pred cC
Confidence 64
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.20 E-value=3.1e-11 Score=132.74 Aligned_cols=169 Identities=21% Similarity=0.211 Sum_probs=101.1
Q ss_pred ccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCce
Q 005407 316 DRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHL 393 (698)
Q Consensus 316 ~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L 393 (698)
..+..|+.|+++ .+..+| .++.+++|+.|+|++|. +..+|. +..+++|+.|+|++|. +..+| .++.+++|+.|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEE
Confidence 445566666665 455555 47777777777777777 777766 7777777777777775 66655 47777777777
Q ss_pred ecCCccCCCcCCcCCCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccc
Q 005407 394 MNSRQDDSSYMPRGMERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKM 473 (698)
Q Consensus 394 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~ 473 (698)
++++| .+..+ +.++.+++|+.|++..+.... +. .+..++
T Consensus 115 ~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N~l~~-------l~--------------------------------~l~~l~ 153 (605)
T 1m9s_A 115 SLEHN-GISDI-NGLVHLPQLESLYLGNNKITD-------IT--------------------------------VLSRLT 153 (605)
T ss_dssp ECTTS-CCCCC-GGGGGCTTCSEEECCSSCCCC-------CG--------------------------------GGGSCT
T ss_pred EecCC-CCCCC-ccccCCCccCEEECCCCccCC-------ch--------------------------------hhcccC
Confidence 77777 33333 345666666666554322211 01 122334
Q ss_pred cccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCC
Q 005407 474 RLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLC 541 (698)
Q Consensus 474 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~ 541 (698)
+|+.|+++.+.+... .. +..+++|+.|++.++....+ | .+..+++|+.|+|++|...
T Consensus 154 ~L~~L~Ls~N~l~~~------~~-l~~l~~L~~L~Ls~N~i~~l---~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 154 KLDTLSLEDNQISDI------VP-LAGLTKLQNLYLSKNHISDL---R-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp TCSEEECCSSCCCCC------GG-GTTCTTCCEEECCSSCCCBC---G-GGTTCTTCSEEECCSEEEE
T ss_pred CCCEEECcCCcCCCc------hh-hccCCCCCEEECcCCCCCCC---h-HHccCCCCCEEEccCCcCc
Confidence 455555554443211 01 44566677777766655554 3 3666777777777777543
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.16 E-value=6.7e-11 Score=128.61 Aligned_cols=86 Identities=20% Similarity=0.319 Sum_probs=44.9
Q ss_pred cceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCC
Q 005407 320 CLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSR 397 (698)
Q Consensus 320 ~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~ 397 (698)
.|+.|+++ .+..+|..+. ++|++|+|++|. +..+| ..+++|++|++++|. +..+|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCC
Confidence 34444444 3444554442 456666666665 55665 345566666666654 455555 443 566666665
Q ss_pred ccCCCcCCcCCCCCCCCCccCc
Q 005407 398 QDDSSYMPRGMERLTSLRTLGS 419 (698)
Q Consensus 398 ~~~~~~~p~~i~~L~~L~~L~~ 419 (698)
| .+..+|. .+++|+.|++
T Consensus 130 N-~l~~lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 130 N-QLTMLPE---LPALLEYINA 147 (571)
T ss_dssp S-CCSCCCC---CCTTCCEEEC
T ss_pred C-cCCCCCC---cCccccEEeC
Confidence 5 3333444 3445555543
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.14 E-value=1.6e-10 Score=108.45 Aligned_cols=143 Identities=13% Similarity=0.131 Sum_probs=97.9
Q ss_pred cceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcc-cchhhcccccCce
Q 005407 268 KARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRK-IPKGIKKLIHLRY 344 (698)
Q Consensus 268 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~-lp~~i~~l~~L~~ 344 (698)
.++.+.+.++.... .+ .+..+++|+.|.++++.... ...+..++.|+.|+++ .+.. .|..++.+++|++
T Consensus 45 ~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~~~~-----~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 45 SLTYITLANINVTD--LT-GIEYAHNIKDLTINNIHATN-----YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp TCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESCCCSC-----CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred CccEEeccCCCccC--hH-HHhcCCCCCEEEccCCCCCc-----chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 46677777766532 23 46677888888888773321 1246677777777776 3433 4666778888888
Q ss_pred Eecccccccc-ccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceec
Q 005407 345 LALGWNPWIK-ELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVA 422 (698)
Q Consensus 345 L~L~~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 422 (698)
|++++|. +. ..|..++.+++|++|++++|..+..+| .+..+++|++|++++| .+..++ .+..+++|+.|++..+
T Consensus 117 L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC
T ss_pred EEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCc
Confidence 8888887 55 466678888888888888876577776 5788888888888877 444454 5666777777765543
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.12 E-value=7.8e-12 Score=129.69 Aligned_cols=213 Identities=16% Similarity=0.088 Sum_probs=111.1
Q ss_pred cccccCccceeeeCC--CCcccc-----hhhcccc-cCceEecccccccccc-chhhhcC-----CCCcEeeccCCCCCc
Q 005407 313 KLFDRLTCLRSIDGP--PVRKIP-----KGIKKLI-HLRYLALGWNPWIKEL-PEALCEL-----CNLQTLDVSGCDNLK 378 (698)
Q Consensus 313 ~~~~~l~~L~~L~l~--~~~~lp-----~~i~~l~-~L~~L~L~~~~~l~~l-p~~~~~l-----~~L~~L~l~~~~~l~ 378 (698)
.++...+.|+.|+++ .+...+ ..+..++ +|++|+|++|. +... +..+..+ ++|++|++++|. +.
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~ 93 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF-LS 93 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GG
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-CC
Confidence 334455557777777 444444 4566677 78888888887 6544 4455554 788888888877 44
Q ss_pred c-cchhhhc----c-ccCCceecCCccCCCcCC-cC----CCC-CCCCCccCceeccCCCCcccccccccccccccccCc
Q 005407 379 R-LPERIGE----L-INLRHLMNSRQDDSSYMP-RG----MER-LTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGS 446 (698)
Q Consensus 379 ~-lp~~i~~----l-~~L~~L~l~~~~~~~~~p-~~----i~~-L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~ 446 (698)
. .+..+.. + ++|++|++++|. +...+ .. +.. .++|++|++..+.....
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~------------------- 153 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK------------------- 153 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS-------------------
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH-------------------
Confidence 3 3333333 3 778888888774 33222 11 222 24555554432222110
Q ss_pred eeEccccCcCCCCCcchhhcccccccc-cccceeeeeccCCCcccHHHhhccCCCC-CCCceEEEEeecCCCCC--CCCc
Q 005407 447 LTLRRLGNERDLGDDNDDEKVDLKSKM-RLVELNLWFDRTTETKGHRVVLECLQPP-RSLEKLEILAYEGDTIP--PTSN 522 (698)
Q Consensus 447 l~i~~l~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~--~~p~ 522 (698)
........+...+ +|+.|+++.+..... ....+...+... ++|+.|++.++...... .++.
T Consensus 154 --------------~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 154 --------------SSDELIQILAAIPANVNSLNLRGNNLASK-NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp --------------CHHHHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred --------------HHHHHHHHHhcCCccccEeeecCCCCchh-hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 0001111122222 566666666553321 122223333333 46777777666544310 0123
Q ss_pred hhcc-ccCccEEEEcCCCCCCcCC-----CCCCCCCcceeeccCCc
Q 005407 523 WMLS-LTKLRVLTLRHCFLCECLP-----CLGKLPCLETLTLEGMT 562 (698)
Q Consensus 523 ~~~~-l~~L~~L~L~~c~~~~~l~-----~l~~L~~L~~L~L~~c~ 562 (698)
.+.. .++|+.|+|++|......+ .+..+++|+.|+|++|.
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 3333 3477777777775433211 34566777777777654
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.12 E-value=1.4e-10 Score=105.60 Aligned_cols=128 Identities=21% Similarity=0.182 Sum_probs=80.1
Q ss_pred CcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCceEeccccccccc-cchhhhcCCCCcE
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKE-LPEALCELCNLQT 368 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~~~~l~~L~~ 368 (698)
++++.|+++++..... ..+..+..+++|++|+++ .+..+ ..++.+++|++|++++|. +.. +|..+.++++|++
T Consensus 24 ~~L~~L~l~~n~l~~~--~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDG--KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTT--BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChh--hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCE
Confidence 5566666666653310 122334556666666665 44444 456677777777777777 555 6666666777777
Q ss_pred eeccCCCCCcccc--hhhhccccCCceecCCccCCCcCCc----CCCCCCCCCccCceeccCC
Q 005407 369 LDVSGCDNLKRLP--ERIGELINLRHLMNSRQDDSSYMPR----GMERLTSLRTLGSFVASRG 425 (698)
Q Consensus 369 L~l~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~~~ 425 (698)
|++++|. +..+| ..++.+++|++|++++| .+..+|. .+..+++|+.|++..+...
T Consensus 100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777775 66655 56777777777777777 3444554 5667777777766655443
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.11 E-value=3.3e-10 Score=108.94 Aligned_cols=127 Identities=28% Similarity=0.358 Sum_probs=105.7
Q ss_pred CcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchh-hcccccCceEeccccccccccchh-hhcCCCCc
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKG-IKKLIHLRYLALGWNPWIKELPEA-LCELCNLQ 367 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~ 367 (698)
++|+.|+++++...... +..|.+++.|+.|+++ .+..+|.. +..+++|++|+|++|. +..+|.. +..+++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLE---PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLK 115 (229)
T ss_dssp TTCSEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCCCEEEcCCCccCccC---HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhC
Confidence 78999999998755432 3557888999999998 77888765 6899999999999998 8888765 68899999
Q ss_pred EeeccCCCCCcccchhhhccccCCceecCCccCCCcCC-cCCCCCCCCCccCceeccC
Q 005407 368 TLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMP-RGMERLTSLRTLGSFVASR 424 (698)
Q Consensus 368 ~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~ 424 (698)
+|++++|. +..+|..+..+++|++|++++| .+..+| ..+..+++|+.|.+..+..
T Consensus 116 ~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 116 ELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp EEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred eEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 99999987 8899999999999999999998 555666 4578889999887765544
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.08 E-value=2e-11 Score=126.51 Aligned_cols=241 Identities=12% Similarity=0.060 Sum_probs=145.9
Q ss_pred cccCCCCcceEEEecCccchhhhc-ccccccccCc-cceeeeCC--CCccc-chhhccc-----ccCceEeccccccccc
Q 005407 286 SFVYNETKLRSLAVPRRLYYKRTI-ASSKLFDRLT-CLRSIDGP--PVRKI-PKGIKKL-----IHLRYLALGWNPWIKE 355 (698)
Q Consensus 286 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~l~-~L~~L~l~--~~~~l-p~~i~~l-----~~L~~L~L~~~~~l~~ 355 (698)
......++|+.|+++++....... .....+.+++ .|+.|+++ .+... +..+..+ .+|++|+|++|. +..
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~ 94 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSY 94 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGG
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CCh
Confidence 344455669999999987654332 1124467777 89999998 44443 4456654 999999999999 765
Q ss_pred cc-hh----hhcC-CCCcEeeccCCCCCcccch-hhh----c-cccCCceecCCccCCC----cCCcCCCCCC-CCCccC
Q 005407 356 LP-EA----LCEL-CNLQTLDVSGCDNLKRLPE-RIG----E-LINLRHLMNSRQDDSS----YMPRGMERLT-SLRTLG 418 (698)
Q Consensus 356 lp-~~----~~~l-~~L~~L~l~~~~~l~~lp~-~i~----~-l~~L~~L~l~~~~~~~----~~p~~i~~L~-~L~~L~ 418 (698)
.+ .. +..+ ++|++|++++|. +...+. .+. . .++|++|++++|.... .++..+..+. +|++|+
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 44 33 4455 899999999998 555543 333 3 2699999999984332 2223333443 666665
Q ss_pred ceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhccccccc-ccccceeeeeccCCCcccHHHhhcc
Q 005407 419 SFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSK-MRLVELNLWFDRTTETKGHRVVLEC 497 (698)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~ 497 (698)
+..+..... ........+... ++|+.|+++.+.+.. .+...+...
T Consensus 174 Ls~n~l~~~---------------------------------~~~~l~~~l~~~~~~L~~L~Ls~N~i~~-~~~~~l~~~ 219 (362)
T 3goz_A 174 LRGNNLASK---------------------------------NCAELAKFLASIPASVTSLDLSANLLGL-KSYAELAYI 219 (362)
T ss_dssp CTTSCGGGS---------------------------------CHHHHHHHHHTSCTTCCEEECTTSCGGG-SCHHHHHHH
T ss_pred ecCCCCchh---------------------------------hHHHHHHHHHhCCCCCCEEECCCCCCCh-hHHHHHHHH
Confidence 443222110 000111122233 367777777766432 122334444
Q ss_pred CCC-CCCCceEEEEeecCCCCCC--CCchhccccCccEEEEcCCCCCC-------c-CCCCCCCCCcceeeccCCc
Q 005407 498 LQP-PRSLEKLEILAYEGDTIPP--TSNWMLSLTKLRVLTLRHCFLCE-------C-LPCLGKLPCLETLTLEGMT 562 (698)
Q Consensus 498 ~~~-~~~L~~L~l~~~~~~~~~~--~p~~~~~l~~L~~L~L~~c~~~~-------~-l~~l~~L~~L~~L~L~~c~ 562 (698)
+.. +++|+.|++.++....... +...+..+++|+.|+|++|.... . ...+..+++|+.|+++++.
T Consensus 220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 433 4588889888876655410 01223467889999999886111 1 1256678889999998864
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.07 E-value=3.9e-10 Score=102.73 Aligned_cols=134 Identities=19% Similarity=0.198 Sum_probs=108.9
Q ss_pred CCcceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcc-cchhhcccccC
Q 005407 266 CWKARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRK-IPKGIKKLIHL 342 (698)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~-lp~~i~~l~~L 342 (698)
...++.+.+.++.......+..+..+++|+.|+++++..... ..+..+++|++|+++ .+.. +|..+..+++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-----SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-----SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-----hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 456788888887763224566678899999999999875443 457889999999988 5655 77777889999
Q ss_pred ceEeccccccccccc--hhhhcCCCCcEeeccCCCCCcccch----hhhccccCCceecCCccCCCcCCcC
Q 005407 343 RYLALGWNPWIKELP--EALCELCNLQTLDVSGCDNLKRLPE----RIGELINLRHLMNSRQDDSSYMPRG 407 (698)
Q Consensus 343 ~~L~L~~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~----~i~~l~~L~~L~l~~~~~~~~~p~~ 407 (698)
++|++++|. +..+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++| ....+|..
T Consensus 98 ~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~ 165 (168)
T 2ell_A 98 THLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPDS 165 (168)
T ss_dssp CEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCSS
T ss_pred CEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chhhcccc
Confidence 999999998 99887 679999999999999987 777776 7899999999999988 45556643
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.06 E-value=2e-10 Score=102.36 Aligned_cols=123 Identities=22% Similarity=0.214 Sum_probs=79.1
Q ss_pred CCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCceEeccccccccc-cchhhhcCCCCc
Q 005407 291 ETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKE-LPEALCELCNLQ 367 (698)
Q Consensus 291 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~~~~l~~L~ 367 (698)
.++++.|+++++.... ...+..+..++.|+.|+++ .+..+ ..++.+++|++|++++|. +.. +|..++.+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE--GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBT--TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCCh--hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCC
Confidence 3566777777665431 0123345666777777766 44455 557777778888887777 665 676666777788
Q ss_pred EeeccCCCCCcccc--hhhhccccCCceecCCccCCCcCCc----CCCCCCCCCccCc
Q 005407 368 TLDVSGCDNLKRLP--ERIGELINLRHLMNSRQDDSSYMPR----GMERLTSLRTLGS 419 (698)
Q Consensus 368 ~L~l~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~ 419 (698)
+|++++|. +..+| ..++.+++|++|++++| .+..+|. .++.+++|+.|++
T Consensus 92 ~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 88887776 66554 66777777888877777 3444443 4556666666654
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.06 E-value=5.8e-10 Score=106.41 Aligned_cols=127 Identities=20% Similarity=0.231 Sum_probs=100.8
Q ss_pred CcceEEEecCccchhhhcccccccccCccceeeeCC--CCccc-chhhcccccCceEeccccccccccchh-hhcCCCCc
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKI-PKGIKKLIHLRYLALGWNPWIKELPEA-LCELCNLQ 367 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~ 367 (698)
++++.|.++++..... ....|..++.|+.|+++ .+..+ |..+..+.+|++|+|++|. +..+|.. +..+++|+
T Consensus 32 ~~l~~L~l~~n~i~~i---~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVI---PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQ 107 (220)
T ss_dssp TTCCEEECCSSCCCEE---CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred cCCCEEECCCCcCCCc---CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCC
Confidence 6789999998865432 23457888999999998 56666 6779999999999999998 8888876 57899999
Q ss_pred EeeccCCCCCccc-chhhhccccCCceecCCccCCCcCC-cCCCCCCCCCccCceeccC
Q 005407 368 TLDVSGCDNLKRL-PERIGELINLRHLMNSRQDDSSYMP-RGMERLTSLRTLGSFVASR 424 (698)
Q Consensus 368 ~L~l~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~ 424 (698)
+|+|++|. +..+ |..+..+++|++|++++|. +..++ ..+..+++|+.|++..+..
T Consensus 108 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 108 LLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 99999988 5555 5678999999999999984 45555 4578888998887765543
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.05 E-value=7.5e-10 Score=105.63 Aligned_cols=129 Identities=17% Similarity=0.194 Sum_probs=101.7
Q ss_pred CcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccch-hhcccccCceEeccccccccccchh-hhcCCCCc
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPK-GIKKLIHLRYLALGWNPWIKELPEA-LCELCNLQ 367 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~ 367 (698)
..++.|.++++......+ ...|.+++.|+.|+++ .+..++. .+..+.+|++|+|++|. +..+|.. +..+++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~--~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 108 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEA--TGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLK 108 (220)
T ss_dssp TTCSEEECCSSCCCEECC--CCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCC
T ss_pred CCCCEEEcCCCcCCccCc--hhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCC
Confidence 456889999886544321 2447888999999998 6777765 68999999999999998 7877654 88999999
Q ss_pred EeeccCCCCCccc-chhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccC
Q 005407 368 TLDVSGCDNLKRL-PERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASR 424 (698)
Q Consensus 368 ~L~l~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~ 424 (698)
+|++++|. +..+ |..+..+++|++|++++|......|..+..+++|+.|++..+..
T Consensus 109 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 109 TLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 99999988 5555 67789999999999999855444577888999999987765543
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.05 E-value=9.6e-10 Score=104.89 Aligned_cols=72 Identities=24% Similarity=0.366 Sum_probs=48.1
Q ss_pred eeeCC--CCcccchhhcccccCceEeccccccccccch-hhhcCCCCcEeeccCCCCCccc-chhhhccccCCceecCCc
Q 005407 323 SIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPE-ALCELCNLQTLDVSGCDNLKRL-PERIGELINLRHLMNSRQ 398 (698)
Q Consensus 323 ~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l-p~~i~~l~~L~~L~l~~~ 398 (698)
.+++. .+..+|..+. .+|+.|++++|. +..+|. .+..+++|++|+|++|. +..+ |..+.++++|++|++++|
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSS
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCC
Confidence 44554 5666666554 567777777777 666664 56777777777777776 4443 566777777777777766
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.05 E-value=6.1e-10 Score=105.44 Aligned_cols=156 Identities=24% Similarity=0.305 Sum_probs=97.8
Q ss_pred CCcccchhhcccccCceEeccccccccccchh-hhcCCCCcEeeccCCCCCcccchh-hhccccCCceecCCccCCCcCC
Q 005407 328 PVRKIPKGIKKLIHLRYLALGWNPWIKELPEA-LCELCNLQTLDVSGCDNLKRLPER-IGELINLRHLMNSRQDDSSYMP 405 (698)
Q Consensus 328 ~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p 405 (698)
.+..+|..+ ..+|++|++++|. +..+|.. +.++++|++|++++|. +..+|.. +..+++|++|++++| .+..+|
T Consensus 18 ~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~ 92 (208)
T 2o6s_A 18 GRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN-QLQSLP 92 (208)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC-cCCccC
Confidence 455666544 3578888888887 7777664 5788888888888876 6666654 578888888888887 344444
Q ss_pred cC-CCCCCCCCccCceeccCCCCcccccccccccccccccCceeEccccCcCCCCCcchhhcccccccccccceeeeecc
Q 005407 406 RG-MERLTSLRTLGSFVASRGKSSKACSRLKSLNKLKHLEGSLTLRRLGNERDLGDDNDDEKVDLKSKMRLVELNLWFDR 484 (698)
Q Consensus 406 ~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 484 (698)
.. ++.+++|+.|++..+.... +.
T Consensus 93 ~~~~~~l~~L~~L~L~~N~l~~----------------~~---------------------------------------- 116 (208)
T 2o6s_A 93 NGVFDKLTQLKELALNTNQLQS----------------LP---------------------------------------- 116 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCC----------------CC----------------------------------------
T ss_pred HhHhcCccCCCEEEcCCCcCcc----------------cC----------------------------------------
Confidence 33 4666666666443211110 00
Q ss_pred CCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCc
Q 005407 485 TTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMT 562 (698)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~ 562 (698)
...+..+++|+.|++.++....++ +..+..+++|+.|++++|.. .+.+++|+.|+++.+.
T Consensus 117 ----------~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~------~~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 117 ----------DGVFDKLTQLKDLRLYQNQLKSVP--DGVFDRLTSLQYIWLHDNPW------DCTCPGIRYLSEWINK 176 (208)
T ss_dssp ----------TTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSCCB------CCCTTTTHHHHHHHHH
T ss_pred ----------HhHhccCCcCCEEECCCCccceeC--HHHhccCCCccEEEecCCCe------ecCCCCHHHHHHHHHh
Confidence 011223445666666655554442 33466788888888888843 2456778888877644
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.04 E-value=2.8e-10 Score=128.45 Aligned_cols=111 Identities=24% Similarity=0.255 Sum_probs=88.7
Q ss_pred ccccccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhcccc
Q 005407 312 SKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELIN 389 (698)
Q Consensus 312 ~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~ 389 (698)
+..+..+..|+.|+++ .+..+|..+..+.+|++|+|++|. +..+|..+++|++|++|+|++|. +..+|..++.|++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCC
Confidence 4557788888888888 667888888888889999998888 78888888888899999998887 6788888888888
Q ss_pred CCceecCCccCCCcCCcCCCCCCCCCccCceeccCC
Q 005407 390 LRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASRG 425 (698)
Q Consensus 390 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~ 425 (698)
|++|++++| .+..+|..+++|++|+.|++..+...
T Consensus 295 L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 295 LKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCEEECCCC-CCCccChhhhcCCCccEEeCCCCccC
Confidence 999988888 56788888888888888887665544
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.02 E-value=3e-10 Score=104.37 Aligned_cols=128 Identities=20% Similarity=0.173 Sum_probs=95.3
Q ss_pred ccCCCCcceEEEecCccchhhhcccccccccCc-cceeeeCC--CCcccchhhcccccCceEeccccccccccchhh-hc
Q 005407 287 FVYNETKLRSLAVPRRLYYKRTIASSKLFDRLT-CLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEAL-CE 362 (698)
Q Consensus 287 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~-~~ 362 (698)
.+.++++|+.|.++++..... +. +..+. .|++|+++ .+..+ ..++.+++|++|++++|. +..+|+.+ +.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i----~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 86 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI----EN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQA 86 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC----CC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHH
T ss_pred hcCCcCCceEEEeeCCCCchh----HH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhc
Confidence 345677888888888865432 22 33333 78888887 56666 568888899999999888 88888655 88
Q ss_pred CCCCcEeeccCCCCCcccch--hhhccccCCceecCCccCCCcCCcC----CCCCCCCCccCceecc
Q 005407 363 LCNLQTLDVSGCDNLKRLPE--RIGELINLRHLMNSRQDDSSYMPRG----MERLTSLRTLGSFVAS 423 (698)
Q Consensus 363 l~~L~~L~l~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----i~~L~~L~~L~~~~~~ 423 (698)
+++|++|++++|. +..+|. .++.+++|++|++++| .+..+|.. ++.+++|+.|++..+.
T Consensus 87 l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 87 LPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 8999999999887 778886 7888889999999888 44566664 7778888888766443
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.01 E-value=8.1e-10 Score=98.31 Aligned_cols=125 Identities=22% Similarity=0.203 Sum_probs=102.3
Q ss_pred CCcceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcc-cchhhcccccC
Q 005407 266 CWKARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRK-IPKGIKKLIHL 342 (698)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~-lp~~i~~l~~L 342 (698)
...++.+.+.++.......+..+..+++|+.|.++++..... ..+.+++.|++|+++ .+.. +|..++.+++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-----TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-----hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 356777887777663224566778899999999999865543 457889999999998 5666 78778889999
Q ss_pred ceEeccccccccccc--hhhhcCCCCcEeeccCCCCCcccch----hhhccccCCceecCC
Q 005407 343 RYLALGWNPWIKELP--EALCELCNLQTLDVSGCDNLKRLPE----RIGELINLRHLMNSR 397 (698)
Q Consensus 343 ~~L~L~~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~----~i~~l~~L~~L~l~~ 397 (698)
++|++++|. +..+| ..++.+++|++|++++|. +..+|. .++.+++|++|++++
T Consensus 91 ~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 91 THLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999 88875 779999999999999997 777776 689999999998863
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.00 E-value=2.7e-09 Score=102.55 Aligned_cols=72 Identities=28% Similarity=0.342 Sum_probs=47.8
Q ss_pred eeeCC--CCcccchhhcccccCceEecccccccccc-chhhhcCCCCcEeeccCCCCCcccchh-hhccccCCceecCCc
Q 005407 323 SIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKEL-PEALCELCNLQTLDVSGCDNLKRLPER-IGELINLRHLMNSRQ 398 (698)
Q Consensus 323 ~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~ 398 (698)
.++++ .+..+|.++. .+|++|+|++|. +..+ |..+.++++|++|+|++|. +..+|.. +..+++|++|++++|
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC
Confidence 45555 5566666553 677777777777 6655 5556777777777777766 5666544 466777777777766
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.98 E-value=1.8e-09 Score=102.18 Aligned_cols=127 Identities=26% Similarity=0.408 Sum_probs=94.9
Q ss_pred CCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchh-hcccccCceEeccccccccccchh-hhcCCCC
Q 005407 291 ETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKG-IKKLIHLRYLALGWNPWIKELPEA-LCELCNL 366 (698)
Q Consensus 291 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L 366 (698)
.++++.|+++++..... ....|.+++.|++|+++ .+..+|.. +..+.+|++|++++|. +..+|.. +.++++|
T Consensus 27 ~~~l~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL---PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCCCcEEEcCCCccCcC---ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCC
Confidence 45788888888765432 23446778888888887 56677665 5788899999999888 7777765 5788999
Q ss_pred cEeeccCCCCCcccchh-hhccccCCceecCCccCCCcCCcC-CCCCCCCCccCceecc
Q 005407 367 QTLDVSGCDNLKRLPER-IGELINLRHLMNSRQDDSSYMPRG-MERLTSLRTLGSFVAS 423 (698)
Q Consensus 367 ~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~ 423 (698)
++|++++|. +..+|.. ++.+++|++|++++| .+..+|.. +..+++|+.|++..+.
T Consensus 103 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 103 KELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence 999998886 6666654 688899999999888 44555544 6788888888776543
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.94 E-value=1.2e-09 Score=113.09 Aligned_cols=93 Identities=22% Similarity=0.221 Sum_probs=60.5
Q ss_pred eeeCC--CCcccchhhcccccCceEeccccccccccchh-hh-cCCCCcEeeccCCCCCcccc-hhhhccccCCceecCC
Q 005407 323 SIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEA-LC-ELCNLQTLDVSGCDNLKRLP-ERIGELINLRHLMNSR 397 (698)
Q Consensus 323 ~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-~~-~l~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~ 397 (698)
++++. .+..+|..+. ..+++|+|++|. +..+|.. +. ++.+|++|+|++|. +..+| ..+..+++|++|++++
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCC
Confidence 44554 5666676553 357788888887 7777654 33 77888888888876 55555 3577788888888877
Q ss_pred ccCCCcCCc-CCCCCCCCCccCce
Q 005407 398 QDDSSYMPR-GMERLTSLRTLGSF 420 (698)
Q Consensus 398 ~~~~~~~p~-~i~~L~~L~~L~~~ 420 (698)
|. +..+|. .+..+++|+.|++.
T Consensus 98 N~-l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 98 NH-LHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp SC-CCEECTTTTTTCTTCCEEECC
T ss_pred Cc-CCcCCHHHhCCCcCCCEEECC
Confidence 73 444443 45666666666443
No 125
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.93 E-value=4.9e-09 Score=102.96 Aligned_cols=141 Identities=17% Similarity=0.142 Sum_probs=92.6
Q ss_pred cceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCceE
Q 005407 268 KARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYL 345 (698)
Q Consensus 268 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L 345 (698)
.++.+.+.++.... .+ .+..+++|+.|+++++...... . +.+++.|+.|+++ .+..+|.. .. .+|++|
T Consensus 42 ~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~----~-l~~l~~L~~L~L~~N~l~~l~~~-~~-~~L~~L 111 (263)
T 1xeu_A 42 GVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLS----P-LKDLTKLEELSVNRNRLKNLNGI-PS-ACLSRL 111 (263)
T ss_dssp TCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCG----G-GTTCSSCCEEECCSSCCSCCTTC-CC-SSCCEE
T ss_pred cCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCCh----h-hccCCCCCEEECCCCccCCcCcc-cc-CcccEE
Confidence 44555555554422 22 4566777888888777544322 2 6677777777777 55666543 23 778888
Q ss_pred eccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCcCCCCCCCCCccCceeccC
Q 005407 346 ALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPRGMERLTSLRTLGSFVASR 424 (698)
Q Consensus 346 ~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~ 424 (698)
++++|. +..+|. ++.+++|++|++++|. +..+| .++.+++|+.|++++| .+..+ ..+..+++|+.|++..+..
T Consensus 112 ~L~~N~-l~~~~~-l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 112 FLDNNE-LRDTDS-LIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp ECCSSC-CSBSGG-GTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred EccCCc-cCCChh-hcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCCcc
Confidence 888877 777764 7778888888888776 66665 5777888888888777 34444 5566777777776665443
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.91 E-value=2.6e-09 Score=116.79 Aligned_cols=102 Identities=20% Similarity=0.215 Sum_probs=88.8
Q ss_pred cceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCC
Q 005407 320 CLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSR 397 (698)
Q Consensus 320 ~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~ 397 (698)
.|+.|+++ .+..+|. ++.+++|++|+|++|. +..+|..++++++|++|+|++|. +..+| .++.|++|+.|++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCC
Confidence 47788888 7778887 9999999999999998 88999999999999999999987 77888 799999999999999
Q ss_pred ccCCCcC--CcCCCCCCCCCccCceeccCCC
Q 005407 398 QDDSSYM--PRGMERLTSLRTLGSFVASRGK 426 (698)
Q Consensus 398 ~~~~~~~--p~~i~~L~~L~~L~~~~~~~~~ 426 (698)
| .+..+ |..++.+++|+.|++..+....
T Consensus 518 N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 518 N-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp S-CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred C-CCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 8 45555 8899999999999887665544
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.90 E-value=5e-09 Score=99.86 Aligned_cols=129 Identities=14% Similarity=0.120 Sum_probs=103.9
Q ss_pred CcceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchh-hcccccCc
Q 005407 267 WKARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKG-IKKLIHLR 343 (698)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~-i~~l~~L~ 343 (698)
...+.+.+.++..........+..+++|+.|+++++..... ....|.+++.|+.|+++ .+..+|.. +..+++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 108 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI---EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLK 108 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE---CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCC
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE---CHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCC
Confidence 34567777777664333334577899999999999875433 23458899999999998 67777665 88999999
Q ss_pred eEecccccccccc-chhhhcCCCCcEeeccCCCCCccc-chhhhccccCCceecCCccC
Q 005407 344 YLALGWNPWIKEL-PEALCELCNLQTLDVSGCDNLKRL-PERIGELINLRHLMNSRQDD 400 (698)
Q Consensus 344 ~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~ 400 (698)
+|+|++|. +..+ |..+..+++|++|+|++|. +..+ |..+..+++|+.|++++|..
T Consensus 109 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 109 TLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EEECTTSC-CCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EEECCCCc-CCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 99999999 7777 6779999999999999988 6655 77899999999999999843
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.85 E-value=5.7e-09 Score=95.71 Aligned_cols=124 Identities=19% Similarity=0.161 Sum_probs=101.4
Q ss_pred CCcceEEEEEccCCCcccCCcccCCC-CcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhh-ccccc
Q 005407 266 CWKARHLMIMGEMSKEVPFPSFVYNE-TKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGI-KKLIH 341 (698)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i-~~l~~ 341 (698)
...++.+.+.++.... .+. +..+ ++|+.|+++++..... ..+..++.|+.|+++ .+..+|+.+ ..+++
T Consensus 18 ~~~L~~L~l~~n~l~~--i~~-~~~~~~~L~~L~Ls~N~l~~~-----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV--IEN-LGATLDQFDAIDFSDNEIRKL-----DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp TTSCEEEECTTSCCCS--CCC-GGGGTTCCSEEECCSSCCCEE-----CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred cCCceEEEeeCCCCch--hHH-hhhcCCCCCEEECCCCCCCcc-----cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4567777777776532 233 3444 4999999999975543 457889999999999 778888765 89999
Q ss_pred CceEeccccccccccch--hhhcCCCCcEeeccCCCCCcccchh----hhccccCCceecCCcc
Q 005407 342 LRYLALGWNPWIKELPE--ALCELCNLQTLDVSGCDNLKRLPER----IGELINLRHLMNSRQD 399 (698)
Q Consensus 342 L~~L~L~~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~----i~~l~~L~~L~l~~~~ 399 (698)
|++|++++|. +..+|. .++.+++|++|++++|. +..+|.. ++.+++|+.|++++|.
T Consensus 90 L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 90 LTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999999 899997 79999999999999987 7788885 8999999999998874
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.85 E-value=3.1e-09 Score=120.02 Aligned_cols=117 Identities=21% Similarity=0.232 Sum_probs=93.8
Q ss_pred CCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhh
Q 005407 284 FPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALC 361 (698)
Q Consensus 284 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 361 (698)
.+..+..++.|+.|+++++.... ++..+.+++.|++|+++ .+..+|.+|+.|.+|++|+|++|. +..+|..++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~----l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~ 290 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFN----ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELG 290 (727)
T ss_dssp ------CCCCCCEEECTTSCCSC----CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGG
T ss_pred ChhhhccCCCCcEEECCCCCCCC----CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhc
Confidence 34567788899999999987542 22334578899999998 677899999999999999999999 889999999
Q ss_pred cCCCCcEeeccCCCCCcccchhhhccccCCceecCCccCCCcCCc
Q 005407 362 ELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQDDSSYMPR 406 (698)
Q Consensus 362 ~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~ 406 (698)
+|++|++|+|++|. +..+|..|+.|++|++|++++|.....+|.
T Consensus 291 ~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 291 SCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp GGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 99999999999986 789999999999999999999865444443
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=1.1e-08 Score=104.38 Aligned_cols=123 Identities=16% Similarity=0.159 Sum_probs=81.9
Q ss_pred CCCCCceEEEEeecCCCCCCCCchh-ccccCccEEEEcCCCCCCcCC--CCCCCCCcceeeccCCcceeeeCccccCCCc
Q 005407 500 PPRSLEKLEILAYEGDTIPPTSNWM-LSLTKLRVLTLRHCFLCECLP--CLGKLPCLETLTLEGMTSVKRLGNEFLGIAE 576 (698)
Q Consensus 500 ~~~~L~~L~l~~~~~~~~~~~p~~~-~~l~~L~~L~L~~c~~~~~l~--~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~ 576 (698)
.+.++..+.+.+...... ...+ ..+++|+.|+|++|. ++.++ .+..+++|+.++|.+. ++.++...+
T Consensus 200 ~~~~~~~l~~~~~l~~~~---~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF---- 269 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNAD---FKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVF---- 269 (329)
T ss_dssp CGGGCSEEEEEECCCHHH---HHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTT----
T ss_pred CccccceEEEeeeecHHH---HHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHh----
Confidence 345667777765422111 1111 137899999999875 44444 5788999999999863 888876544
Q ss_pred cccccccccccccccccCcCCCccc-ccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCc-cccCCCCcc
Q 005407 577 DDQARGDQAETASSIIRDTAFPRLE-TLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPD-YILGSTSLD 654 (698)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~-~~~~l~~L~ 654 (698)
..+++|+ .+.+.+ +++.+.. +....+++|+.|.+.+ .+++.++. .+.++++|+
T Consensus 270 ------------------~~~~~L~~~l~l~~--~l~~I~~----~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 270 ------------------SNCGRLAGTLELPA--SVTAIEF----GAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSK 324 (329)
T ss_dssp ------------------TTCTTCCEEEEECT--TCCEECT----TTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCC
T ss_pred ------------------hCChhccEEEEEcc--cceEEch----hhhhCCccCCEEEeCC-CccCccchhhhcCCcchh
Confidence 3567777 777775 5666553 4556788999999876 47888876 455677777
Q ss_pred eEE
Q 005407 655 KLL 657 (698)
Q Consensus 655 ~L~ 657 (698)
.|+
T Consensus 325 ~ly 327 (329)
T 3sb4_A 325 LIY 327 (329)
T ss_dssp EEE
T ss_pred hhc
Confidence 665
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.82 E-value=8e-09 Score=96.15 Aligned_cols=102 Identities=23% Similarity=0.260 Sum_probs=66.5
Q ss_pred cceeeeCC--CCcccchh--hcccccCceEecccccccccc-chhhhcCCCCcEeeccCCCCCcccch-hhhccccCCce
Q 005407 320 CLRSIDGP--PVRKIPKG--IKKLIHLRYLALGWNPWIKEL-PEALCELCNLQTLDVSGCDNLKRLPE-RIGELINLRHL 393 (698)
Q Consensus 320 ~L~~L~l~--~~~~lp~~--i~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L 393 (698)
.|+.|+++ .+..++.. ++.+++|++|+|++|. +..+ |..+.++++|++|+|++|. +..+|. .++.+++|++|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEE
Confidence 45555555 45555543 6777777777777777 6655 5567777777777777776 444443 36777777777
Q ss_pred ecCCccCCCcCCcCCCCCCCCCccCceecc
Q 005407 394 MNSRQDDSSYMPRGMERLTSLRTLGSFVAS 423 (698)
Q Consensus 394 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~ 423 (698)
++++|......|..++.+++|+.|++..+.
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 777775444456667777777777655443
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.79 E-value=2.7e-10 Score=106.91 Aligned_cols=68 Identities=24% Similarity=0.278 Sum_probs=50.2
Q ss_pred CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCceecCCc
Q 005407 328 PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRHLMNSRQ 398 (698)
Q Consensus 328 ~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~ 398 (698)
.++.+|..++.+++|++|++++|. +..+| .+.++++|++|++++|. +..+|..++.+++|+.|++++|
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE
T ss_pred cHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC
Confidence 345566677777888888887777 77777 67777888888887776 6677776777777777777766
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=1.3e-08 Score=103.75 Aligned_cols=100 Identities=17% Similarity=0.068 Sum_probs=75.4
Q ss_pred CCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC--CCCCCCCcc-eeeccCCcceeeeCccccCCCcc
Q 005407 501 PRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP--CLGKLPCLE-TLTLEGMTSVKRLGNEFLGIAED 577 (698)
Q Consensus 501 ~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~--~l~~L~~L~-~L~L~~c~~l~~l~~~~~~~~~~ 577 (698)
+++|+.+++.++....++ +..+..+.+|+.|+|.++ ++.++ .+..+++|+ .+++.+ +++.++...+
T Consensus 225 ~~~L~~l~L~~n~i~~I~--~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF----- 293 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIP--DFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAF----- 293 (329)
T ss_dssp CTTCCEEECTTBCCCEEC--TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTT-----
T ss_pred cCCCeEEECCCCCcceec--HhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhh-----
Confidence 678999999887777774 456778999999999886 55555 688899999 999987 6888876544
Q ss_pred ccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceee
Q 005407 578 DQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLS 633 (698)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 633 (698)
..+++|+.+.+.. ++++.+.. +....+++|+.++
T Consensus 294 -----------------~~c~~L~~l~l~~-n~i~~I~~----~aF~~~~~L~~ly 327 (329)
T 3sb4_A 294 -----------------MGCDNLRYVLATG-DKITTLGD----ELFGNGVPSKLIY 327 (329)
T ss_dssp -----------------TTCTTEEEEEECS-SCCCEECT----TTTCTTCCCCEEE
T ss_pred -----------------hCCccCCEEEeCC-CccCccch----hhhcCCcchhhhc
Confidence 4578899998865 45666654 3444677777765
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.78 E-value=2.3e-08 Score=93.05 Aligned_cols=101 Identities=24% Similarity=0.294 Sum_probs=74.7
Q ss_pred cceeeeCC--CCcccchhhcccccCceEeccccccccccch-hhhcCCCCcEeeccCCCCCcccch-hhhccccCCceec
Q 005407 320 CLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPE-ALCELCNLQTLDVSGCDNLKRLPE-RIGELINLRHLMN 395 (698)
Q Consensus 320 ~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l 395 (698)
.|+.|+++ .+..+|..+..+.+|++|+|++|. +..++. .+.++++|++|+|++|. +..+|. .++.+++|++|++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEEC
Confidence 56666666 566777778888888888888888 777764 57888888888888877 555554 5788888888888
Q ss_pred CCccCCCcCCc-CCCCCCCCCccCceecc
Q 005407 396 SRQDDSSYMPR-GMERLTSLRTLGSFVAS 423 (698)
Q Consensus 396 ~~~~~~~~~p~-~i~~L~~L~~L~~~~~~ 423 (698)
++| .+..+|. .+..+++|+.|++..+.
T Consensus 110 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 110 HGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 887 4555665 46778888877665443
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.77 E-value=1.3e-08 Score=105.13 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=91.0
Q ss_pred CcceEEEecCccchhhhcccccccc-cCccceeeeCC--CCcccch-hhcccccCceEeccccccccccch-hhhcCCCC
Q 005407 292 TKLRSLAVPRRLYYKRTIASSKLFD-RLTCLRSIDGP--PVRKIPK-GIKKLIHLRYLALGWNPWIKELPE-ALCELCNL 366 (698)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~--~~~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L 366 (698)
+.++.|+++++...... ...|. ++.+|+.|+++ .+..++. .+..+.+|++|+|++|. +..+|. .+..+.+|
T Consensus 39 ~~l~~L~Ls~N~l~~l~---~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLR---AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSSCCCEEC---TTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred CCCCEEECCCCCCCccC---hhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCC
Confidence 45788888887644322 23355 78888888887 5666664 48888888888888888 777765 47788888
Q ss_pred cEeeccCCCCCccc-chhhhccccCCceecCCccCCCcCCcCC----CCCCCCCccCceeccCC
Q 005407 367 QTLDVSGCDNLKRL-PERIGELINLRHLMNSRQDDSSYMPRGM----ERLTSLRTLGSFVASRG 425 (698)
Q Consensus 367 ~~L~l~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i----~~L~~L~~L~~~~~~~~ 425 (698)
++|+|++|. +..+ |..+..+++|++|++++| .+..+|..+ +.+++|+.|++..+...
T Consensus 115 ~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 115 EVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 888888887 4444 567888888888888887 566676554 56777777776554443
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.75 E-value=2.2e-08 Score=93.10 Aligned_cols=105 Identities=23% Similarity=0.259 Sum_probs=86.4
Q ss_pred cceEEEecCccchhhhcccccccccCccceeeeCC--CCccc-chhhcccccCceEeccccccccccchh-hhcCCCCcE
Q 005407 293 KLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKI-PKGIKKLIHLRYLALGWNPWIKELPEA-LCELCNLQT 368 (698)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~ 368 (698)
+++.|.++++....... ...|.+++.|++|+++ .+..+ |..+..+.+|++|+|++|. +..+|.. +..+++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 30 HTTELLLNDNELGRISS--DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKT 106 (192)
T ss_dssp TCSEEECCSCCCCSBCC--SCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCE
T ss_pred CCCEEECCCCcCCccCC--ccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCE
Confidence 89999999986543322 2347889999999998 66666 6779999999999999999 8877654 889999999
Q ss_pred eeccCCCCCcccchhhhccccCCceecCCccC
Q 005407 369 LDVSGCDNLKRLPERIGELINLRHLMNSRQDD 400 (698)
Q Consensus 369 L~l~~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 400 (698)
|++++|......|..++.+++|++|++++|..
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 99999984445578899999999999999854
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.73 E-value=2.5e-08 Score=92.71 Aligned_cols=99 Identities=23% Similarity=0.304 Sum_probs=79.3
Q ss_pred eeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccc-hhhhccccCCceecCCcc
Q 005407 323 SIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLP-ERIGELINLRHLMNSRQD 399 (698)
Q Consensus 323 ~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp-~~i~~l~~L~~L~l~~~~ 399 (698)
+++++ .+..+|..+. .+|++|++++|. +..+|..+.++++|++|++++|. +..++ ..+..+++|++|++++|.
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc
Confidence 45555 6777887654 589999999999 99999999999999999999988 66665 458999999999999995
Q ss_pred CCCcCCcCCCCCCCCCccCceeccCC
Q 005407 400 DSSYMPRGMERLTSLRTLGSFVASRG 425 (698)
Q Consensus 400 ~~~~~p~~i~~L~~L~~L~~~~~~~~ 425 (698)
.....|..++.+++|+.|++..+...
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 44334456888999999877655443
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.73 E-value=2.2e-08 Score=91.37 Aligned_cols=98 Identities=26% Similarity=0.372 Sum_probs=66.6
Q ss_pred eeeCC--CCcccchhhcccccCceEecccccccccc-chhhhcCCCCcEeeccCCCCCcccchh-hhccccCCceecCCc
Q 005407 323 SIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKEL-PEALCELCNLQTLDVSGCDNLKRLPER-IGELINLRHLMNSRQ 398 (698)
Q Consensus 323 ~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~ 398 (698)
.++++ .+..+|..+. .+|++|+|++|. +..+ |..++++++|++|+|++|. +..+|.. ++.+++|++|++++|
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 44444 4566676554 677788888777 6666 4567777888888888775 6677665 367778888888777
Q ss_pred cCCCcCCcC-CCCCCCCCccCceeccCC
Q 005407 399 DDSSYMPRG-MERLTSLRTLGSFVASRG 425 (698)
Q Consensus 399 ~~~~~~p~~-i~~L~~L~~L~~~~~~~~ 425 (698)
.+..+|.. ++.+++|+.|++..+...
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 45556654 677777777776655443
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.69 E-value=2.8e-10 Score=106.79 Aligned_cols=101 Identities=25% Similarity=0.277 Sum_probs=46.4
Q ss_pred cccCccceeeeCC--CCcccchhhcccccCceEeccccccccccchhhhcCCCCcEeeccCCCCCcccchhhhccccCCc
Q 005407 315 FDRLTCLRSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPERIGELINLRH 392 (698)
Q Consensus 315 ~~~l~~L~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~L~~ 392 (698)
+..+++|++|+++ .+..+| .+..+++|++|++++|. +..+|..+..+++|++|++++|. +..+| .++.+++|++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCCE
Confidence 3344444444444 333344 44455555555555554 44555444444555555555543 44444 3445555555
Q ss_pred eecCCccCCCcCCc--CCCCCCCCCccCce
Q 005407 393 LMNSRQDDSSYMPR--GMERLTSLRTLGSF 420 (698)
Q Consensus 393 L~l~~~~~~~~~p~--~i~~L~~L~~L~~~ 420 (698)
|++++| .+..+|. .+..+++|+.|++.
T Consensus 120 L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 120 LYMSNN-KITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp EEESEE-ECCCHHHHHHHTTTTTCSEEEEC
T ss_pred EECCCC-cCCchhHHHHHhcCCCCCEEEec
Confidence 555444 2222222 34444455544443
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.65 E-value=5.1e-08 Score=88.60 Aligned_cols=99 Identities=25% Similarity=0.369 Sum_probs=70.2
Q ss_pred eeeeCC--CCcccchhhcccccCceEecccccccccc-chhhhcCCCCcEeeccCCCCCcccchh-hhccccCCceecCC
Q 005407 322 RSIDGP--PVRKIPKGIKKLIHLRYLALGWNPWIKEL-PEALCELCNLQTLDVSGCDNLKRLPER-IGELINLRHLMNSR 397 (698)
Q Consensus 322 ~~L~l~--~~~~lp~~i~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~ 397 (698)
+.++++ .+..+|..+. .+|++|+|++|. +..+ |..+..+++|++|+|++|. +..+|.. +..+++|++|++++
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCC
Confidence 345555 5666776553 678888888887 7776 5557888888888888876 6677665 47788888888887
Q ss_pred ccCCCcCCc-CCCCCCCCCccCceeccCC
Q 005407 398 QDDSSYMPR-GMERLTSLRTLGSFVASRG 425 (698)
Q Consensus 398 ~~~~~~~p~-~i~~L~~L~~L~~~~~~~~ 425 (698)
| .+..+|. .++.+++|+.|++..+...
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 N-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7 4555555 4777888888877655443
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.62 E-value=1.1e-07 Score=87.08 Aligned_cols=101 Identities=27% Similarity=0.443 Sum_probs=59.4
Q ss_pred cceeeeCC--CCcccchh-hcccccCceEeccccccccccchh-hhcCCCCcEeeccCCCCCcccchh-hhccccCCcee
Q 005407 320 CLRSIDGP--PVRKIPKG-IKKLIHLRYLALGWNPWIKELPEA-LCELCNLQTLDVSGCDNLKRLPER-IGELINLRHLM 394 (698)
Q Consensus 320 ~L~~L~l~--~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~ 394 (698)
.|+.|+++ .+..+|.. ++.+.+|++|++++|. +..+|.. ++.+++|++|++++|. +..+|.. ++.+++|++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEE
Confidence 34444444 34444433 4666677777777766 6666544 4667777777777665 5555543 46667777777
Q ss_pred cCCccCCCcCCcC-CCCCCCCCccCceecc
Q 005407 395 NSRQDDSSYMPRG-MERLTSLRTLGSFVAS 423 (698)
Q Consensus 395 l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~ 423 (698)
+++| .+..+|.. +..+++|+.|++..+.
T Consensus 107 l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 107 LDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 7666 44455544 3566666666655443
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.56 E-value=1.7e-07 Score=85.44 Aligned_cols=84 Identities=21% Similarity=0.295 Sum_probs=68.5
Q ss_pred ccceeeeCC--CCccc-chhhcccccCceEeccccccccccchh-hhcCCCCcEeeccCCCCCcccchh-hhccccCCce
Q 005407 319 TCLRSIDGP--PVRKI-PKGIKKLIHLRYLALGWNPWIKELPEA-LCELCNLQTLDVSGCDNLKRLPER-IGELINLRHL 393 (698)
Q Consensus 319 ~~L~~L~l~--~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L 393 (698)
..|+.|+++ .+..+ |..+..+.+|++|+|++|. +..+|.. +.++++|++|+|++|. +..+|.. ++.+++|++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEE
Confidence 567777777 56666 5568899999999999998 9999876 4889999999999987 7788876 8899999999
Q ss_pred ecCCccCCCcCC
Q 005407 394 MNSRQDDSSYMP 405 (698)
Q Consensus 394 ~l~~~~~~~~~p 405 (698)
++++| .+...+
T Consensus 111 ~L~~N-~~~c~~ 121 (174)
T 2r9u_A 111 YLYNN-PWDCEC 121 (174)
T ss_dssp ECCSS-CBCTTB
T ss_pred EeCCC-Cccccc
Confidence 99988 344444
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.51 E-value=3.9e-07 Score=83.36 Aligned_cols=105 Identities=24% Similarity=0.370 Sum_probs=82.1
Q ss_pred CCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcccchh-hcccccCceEeccccccccccchh-hhcCCCC
Q 005407 291 ETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRKIPKG-IKKLIHLRYLALGWNPWIKELPEA-LCELCNL 366 (698)
Q Consensus 291 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L 366 (698)
.++++.|.++++..... ....|.+++.|++|+++ .+..+|.. +..+.+|++|++++|. +..+|.. +..+++|
T Consensus 27 ~~~l~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L 102 (177)
T 2o6r_A 27 PSSATRLELESNKLQSL---PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQL 102 (177)
T ss_dssp CTTCSEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCCCcEEEeCCCcccEe---CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCccc
Confidence 36889999988765432 23446788889998888 67777765 6889999999999998 8887765 5788999
Q ss_pred cEeeccCCCCCcccchhh-hccccCCceecCCccC
Q 005407 367 QTLDVSGCDNLKRLPERI-GELINLRHLMNSRQDD 400 (698)
Q Consensus 367 ~~L~l~~~~~l~~lp~~i-~~l~~L~~L~l~~~~~ 400 (698)
++|++++|. +..+|..+ ..+++|++|++++|..
T Consensus 103 ~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 103 KELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCe
Confidence 999999886 77777764 7789999999988843
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.45 E-value=3.8e-07 Score=82.75 Aligned_cols=79 Identities=24% Similarity=0.340 Sum_probs=65.9
Q ss_pred ccceeeeCC--CCccc-chhhcccccCceEeccccccccccchh-hhcCCCCcEeeccCCCCCcccchh-hhccccCCce
Q 005407 319 TCLRSIDGP--PVRKI-PKGIKKLIHLRYLALGWNPWIKELPEA-LCELCNLQTLDVSGCDNLKRLPER-IGELINLRHL 393 (698)
Q Consensus 319 ~~L~~L~l~--~~~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L 393 (698)
+.|+.|+++ .+..+ |..+..+.+|++|+|++|. +..+|.. +..+++|++|+|++|. +..+|.. +..+++|++|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEE
Confidence 566777777 66666 5568899999999999998 8888876 5899999999999987 7777764 8899999999
Q ss_pred ecCCcc
Q 005407 394 MNSRQD 399 (698)
Q Consensus 394 ~l~~~~ 399 (698)
++++|.
T Consensus 108 ~L~~N~ 113 (170)
T 3g39_A 108 WLLNNP 113 (170)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 999884
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.34 E-value=2.1e-05 Score=81.79 Aligned_cols=124 Identities=12% Similarity=0.130 Sum_probs=77.4
Q ss_pred CCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCC----CcCC--CCCCCCCcceeeccCCcceeeeCccccCCC
Q 005407 502 RSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLC----ECLP--CLGKLPCLETLTLEGMTSVKRLGNEFLGIA 575 (698)
Q Consensus 502 ~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~----~~l~--~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~ 575 (698)
.+|+.+.+.+ ....+. ...+..+++|+.+.+.++... ..++ .+..+++|+.+.|.+ +++.++...+
T Consensus 248 ~~L~~i~lp~-~i~~I~--~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF--- 319 (401)
T 4fdw_A 248 SGITTVKLPN-GVTNIA--SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLL--- 319 (401)
T ss_dssp CCCSEEEEET-TCCEEC--TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTT---
T ss_pred CCccEEEeCC-CccEEC--hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhh---
Confidence 3566666632 222332 445667888888888776432 1233 577888899998873 4777766543
Q ss_pred ccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCcc-ccCC-CCc
Q 005407 576 EDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDY-ILGS-TSL 653 (698)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~-~~~l-~~L 653 (698)
..+++|+.+.|.. +++.+.. +....+ +|+.+.+.+. .+..++.. +..+ ..+
T Consensus 320 -------------------~~c~~L~~l~lp~--~l~~I~~----~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 320 -------------------GGNRKVTQLTIPA--NVTQINF----SAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp -------------------TTCCSCCEEEECT--TCCEECT----TSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTC
T ss_pred -------------------cCCCCccEEEECc--cccEEcH----HhCCCC-CCCEEEEcCC-CCcccccccccCCCCCc
Confidence 3467788888753 4555543 344456 8999999874 55555543 3334 467
Q ss_pred ceEEEcc
Q 005407 654 DKLLIYY 660 (698)
Q Consensus 654 ~~L~i~~ 660 (698)
..|++..
T Consensus 373 ~~l~vp~ 379 (401)
T 4fdw_A 373 TVIRVPA 379 (401)
T ss_dssp CEEEECG
T ss_pred cEEEeCH
Confidence 7888765
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.33 E-value=7e-07 Score=91.63 Aligned_cols=94 Identities=15% Similarity=0.047 Sum_probs=72.4
Q ss_pred CCcccchhhcccccCceEeccc-cccccccc-hhhhcCCCCcEeeccCCCCCcccch-hhhccccCCceecCCccCCCcC
Q 005407 328 PVRKIPKGIKKLIHLRYLALGW-NPWIKELP-EALCELCNLQTLDVSGCDNLKRLPE-RIGELINLRHLMNSRQDDSSYM 404 (698)
Q Consensus 328 ~~~~lp~~i~~l~~L~~L~L~~-~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~ 404 (698)
.+..+|. +..+.+|++|+|++ |. +..+| ..+++|.+|++|+|++|. +..+|+ .+++|++|++|++++| .+..+
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~ 95 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN-ALESL 95 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS-CCSCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC-cccee
Confidence 4667888 88899999999986 76 88887 468899999999999987 666554 5788999999999888 56677
Q ss_pred CcCCCCCCCCCccCceeccCC
Q 005407 405 PRGMERLTSLRTLGSFVASRG 425 (698)
Q Consensus 405 p~~i~~L~~L~~L~~~~~~~~ 425 (698)
|..+.....|+.|.+..+...
T Consensus 96 ~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 96 SWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSTTTCSCCCCEEECCSSCCC
T ss_pred CHHHcccCCceEEEeeCCCcc
Confidence 766544444888877655543
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.24 E-value=4.2e-05 Score=79.75 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=36.5
Q ss_pred CcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCC-CCcccchh-hcccccCceEeccc
Q 005407 285 PSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP-PVRKIPKG-IKKLIHLRYLALGW 349 (698)
Q Consensus 285 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~-~~~~lp~~-i~~l~~L~~L~L~~ 349 (698)
...|.+|.+|+.+.+.... .......|.++..|+.+++. .+..++.. +..+.+|+.+.+..
T Consensus 64 ~~AF~~c~~L~~i~lp~~i----~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPSTV----REIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTTTTTCTTEEEEECCTTC----CEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCT
T ss_pred HHHhhCCCCceEEEeCCCc----cCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccC
Confidence 3456677778887776431 11123457777777777775 55555443 55666666665543
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.14 E-value=3.8e-05 Score=79.85 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=49.0
Q ss_pred cccccccccceeeeeccCCCcccHHHhhccCCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC--
Q 005407 468 DLKSKMRLVELNLWFDRTTETKGHRVVLECLQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP-- 545 (698)
Q Consensus 468 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~-- 545 (698)
.+..|++|+.+.+..+..........-...+..+++|+.+.+.+ ....+. ...+..+.+|+.+.|..+ +..+.
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~--~~aF~~c~~L~~l~lp~~--l~~I~~~ 340 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG--QGLLGGNRKVTQLTIPAN--VTQINFS 340 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC--TTTTTTCCSCCEEEECTT--CCEECTT
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh--hhhhcCCCCccEEEECcc--ccEEcHH
Confidence 45566666666665433210000001123455566777776652 222332 344556778888888554 33333
Q ss_pred CCCCCCCcceeeccCCcceeeeC
Q 005407 546 CLGKLPCLETLTLEGMTSVKRLG 568 (698)
Q Consensus 546 ~l~~L~~L~~L~L~~c~~l~~l~ 568 (698)
++.++ +|+.+.+.+.. +..++
T Consensus 341 aF~~~-~L~~l~l~~n~-~~~l~ 361 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTT-PPQVF 361 (401)
T ss_dssp SSSSS-CCCEEEECCSS-CCBCC
T ss_pred hCCCC-CCCEEEEcCCC-Ccccc
Confidence 56667 78888887643 34443
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=1e-06 Score=78.76 Aligned_cols=39 Identities=10% Similarity=0.173 Sum_probs=25.0
Q ss_pred cCccEEEEcCCCCCC-cCCCCCCCCCcceeeccCCcceee
Q 005407 528 TKLRVLTLRHCFLCE-CLPCLGKLPCLETLTLEGMTSVKR 566 (698)
Q Consensus 528 ~~L~~L~L~~c~~~~-~l~~l~~L~~L~~L~L~~c~~l~~ 566 (698)
.+|+.|++++|.... .+..+..+++|++|+|++|..++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH
Confidence 367777777776332 344556677777777777765543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.92 E-value=1.4e-05 Score=81.79 Aligned_cols=82 Identities=17% Similarity=0.149 Sum_probs=54.2
Q ss_pred cccCccceeeeCC---CCcccc-hhhcccccCceEeccccccccccch-hhhcCCCCcEeeccCCCCCcccchhhhcccc
Q 005407 315 FDRLTCLRSIDGP---PVRKIP-KGIKKLIHLRYLALGWNPWIKELPE-ALCELCNLQTLDVSGCDNLKRLPERIGELIN 389 (698)
Q Consensus 315 ~~~l~~L~~L~l~---~~~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~~ 389 (698)
+..+..|+.|+++ .+..+| ..|+.|.+|++|+|++|. +..+|+ .|.+|++|++|+|++|. +..+|..+.....
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~ 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLS 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcccCC
Confidence 4455555555553 344555 347777788888888777 666654 46778888888888776 6677765544444
Q ss_pred CCceecCCc
Q 005407 390 LRHLMNSRQ 398 (698)
Q Consensus 390 L~~L~l~~~ 398 (698)
|+.|++.+|
T Consensus 105 L~~l~l~~N 113 (347)
T 2ifg_A 105 LQELVLSGN 113 (347)
T ss_dssp CCEEECCSS
T ss_pred ceEEEeeCC
Confidence 788877776
No 151
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.91 E-value=5.2e-05 Score=79.58 Aligned_cols=199 Identities=9% Similarity=-0.043 Sum_probs=108.1
Q ss_pred CceEEEEEeCCCCCC------hhhHHHHHhhcCCC---C--CCcEEEEEeCchHHHHHhC-------CCCccceeccCCC
Q 005407 9 GKKFFLVLDDVWTEE------PQNWERLWGCLRCG---S--KGSRILVTTRKVKVAIAIG-------TTKSNIIPIELLS 70 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~------~~~~~~l~~~~~~~---~--~gs~IiiTTR~~~v~~~~~-------~~~~~~~~v~~L~ 70 (698)
+++++|||||+|.-+ ...+..+...+... + ....||+||+...+...+. ..-...+++++++
T Consensus 137 ~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~ 216 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYK 216 (412)
T ss_dssp TCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCC
T ss_pred CCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCC
Confidence 679999999996521 23344333333211 2 3345888988766432221 1111239999999
Q ss_pred hHhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhC------CChHHHHHHHHHh-c--c--c---CCHHHHHHHHhhh
Q 005407 71 DEDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCK------GLPLAVKTLGSLL-R--F--K---RKIEEWQRVLESE 136 (698)
Q Consensus 71 ~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~------GlPLal~~~g~~L-~--~--~---~~~~~w~~~l~~~ 136 (698)
.++++++|...+.......... .+....+++.|+ |.|..+..+.... . . . -+.+.+..++...
T Consensus 217 ~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 217 SRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 9999999976643211110011 246778888898 9997655554321 1 0 0 1223333333221
Q ss_pred hcccccccccc-hhhHhhhccCCChhHHHHHhhhcCCC--CCCccCHHHHHHHHHhc--CccccCCCccHHHHHHHHHHH
Q 005407 137 LWELEEVDKGL-LGPLLLSYRDLPPPLKKCFLYCAIFP--KDSMLEKDKLIRLWMAQ--DYLKVKGREDMEVVGEEYFES 211 (698)
Q Consensus 137 ~~~~~~~~~~i-~~~l~~sy~~L~~~~k~~fl~~a~fp--~~~~i~~~~Li~~wi~e--g~~~~~~~~~~~~~~~~~l~~ 211 (698)
. ...+.-.++.|+...+.++..+|.+. .+..+...++...+... .... ..... ......+++.
T Consensus 294 ----------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~~ 361 (412)
T 1w5s_A 294 ----------EAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYN-VKPRG-YTQYHIYLKH 361 (412)
T ss_dssp ----------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSC-CCCCC-HHHHHHHHHH
T ss_pred ----------hccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcC-CCCCC-HHHHHHHHHH
Confidence 1 23355577889999999998888654 22344555544433210 0000 00111 2334567899
Q ss_pred HHhCCCccccc
Q 005407 212 LAMHSLFQDFE 222 (698)
Q Consensus 212 L~~~~ll~~~~ 222 (698)
|++.+++....
T Consensus 362 L~~~gli~~~~ 372 (412)
T 1w5s_A 362 LTSLGLVDAKP 372 (412)
T ss_dssp HHHTTSEEEEC
T ss_pred HHhCCCEEeec
Confidence 99999997653
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=1.8e-06 Score=77.24 Aligned_cols=89 Identities=7% Similarity=0.009 Sum_probs=66.0
Q ss_pred CCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCC----C
Q 005407 551 PCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTI----M 626 (698)
Q Consensus 551 ~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~----~ 626 (698)
.+|+.|++++|. ++..+... ...+++|+.|+|++|..++..... .+.. .
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~----------------------L~~~~~L~~L~L~~C~~ItD~gL~----~L~~~~~~~ 113 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDH----------------------MEGLQYVEKIRLCKCHYIEDGCLE----RLSQLENLQ 113 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGG----------------------GTTCSCCCEEEEESCTTCCHHHHH----HHHTCHHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHH----------------------hcCCCCCCEEEeCCCCccCHHHHH----HHHhccccc
Confidence 469999999986 44332221 357999999999999887765421 1112 3
Q ss_pred CccceeeeccCCCCCC--CCccccCCCCcceEEEccCcccccc
Q 005407 627 PRLRHLSICWSPELKA--LPDYILGSTSLDKLLIYYSRHLNNR 667 (698)
Q Consensus 627 ~~L~~L~l~~c~~L~~--lp~~~~~l~~L~~L~i~~C~~l~~~ 667 (698)
++|++|+|++|++++. +. .+.++++|+.|++++||.+++.
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCCH
T ss_pred CCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCch
Confidence 5799999999999876 32 2345899999999999998874
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.89 E-value=1.4e-06 Score=88.94 Aligned_cols=142 Identities=18% Similarity=0.146 Sum_probs=75.6
Q ss_pred CCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCC-cCCCC--CCCCCcceeeccCCcceeeeCccccCCC
Q 005407 499 QPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCE-CLPCL--GKLPCLETLTLEGMTSVKRLGNEFLGIA 575 (698)
Q Consensus 499 ~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~-~l~~l--~~L~~L~~L~L~~c~~l~~l~~~~~~~~ 575 (698)
..+|+|+.|.+.++.+..+ +. +. +++|+.|+|..|.... .+..+ ..+|+|++|+|+.+.+. .........
T Consensus 169 ~~~P~L~~L~L~g~~~l~l---~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~-~~~~~~~~~- 241 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSI---GK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED-YGFDGDMNV- 241 (362)
T ss_dssp HTCTTCCEEEEECCBTCBC---CS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGG-GTCCSCGGG-
T ss_pred hcCCCCcEEEEeCCCCcee---cc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccc-cccchhHHH-
Confidence 4567788888877644444 33 22 6788888887765322 11122 25788888887532111 000000000
Q ss_pred ccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCC-----CCccccCC
Q 005407 576 EDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKA-----LPDYILGS 650 (698)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~-----lp~~~~~l 650 (698)
.........||+|+.|.+.+|.-......... ....+|+|++|+++.+ .+.. ++..+.++
T Consensus 242 ------------l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la--~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l 306 (362)
T 2ra8_A 242 ------------FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL--ESDILPQLETMDISAG-VLTDEGARLLLDHVDKI 306 (362)
T ss_dssp ------------TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH--HCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHH
T ss_pred ------------HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH--hCccCCCCCEEECCCC-CCChHHHHHHHhhcccC
Confidence 00001124588888888877542211111000 0125788888888764 5554 44444557
Q ss_pred CCcceEEEccCc
Q 005407 651 TSLDKLLIYYSR 662 (698)
Q Consensus 651 ~~L~~L~i~~C~ 662 (698)
++|+.|++++|.
T Consensus 307 ~~L~~L~L~~n~ 318 (362)
T 2ra8_A 307 KHLKFINMKYNY 318 (362)
T ss_dssp TTCSEEECCSBB
T ss_pred CcceEEECCCCc
Confidence 888888888774
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.85 E-value=0.00047 Score=71.71 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=45.5
Q ss_pred ccccccCccceeeeCC-CCcccchh-hcccccCceEeccccccccccch-hhhcCCCCcEeeccC
Q 005407 312 SKLFDRLTCLRSIDGP-PVRKIPKG-IKKLIHLRYLALGWNPWIKELPE-ALCELCNLQTLDVSG 373 (698)
Q Consensus 312 ~~~~~~l~~L~~L~l~-~~~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~ 373 (698)
...|.++..|+.+.+. .++.+++. +..+.+|+.+++..+ ++.++. .+.++.+|+.+.+..
T Consensus 64 ~~AF~~c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTTTTTCTTEEEEECCTTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred HHHhhCCCCceEEEeCCCccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccC
Confidence 3558889999999987 77777654 888999999999754 666654 366777888776653
No 155
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.77 E-value=0.00061 Score=69.47 Aligned_cols=201 Identities=11% Similarity=0.063 Sum_probs=112.0
Q ss_pred ceEEEEEeCCCCCCh-------hhHHHHHhhcCCCCCCcEEEEEeCchHHHHHh----CC------CCccceeccCCChH
Q 005407 10 KKFFLVLDDVWTEEP-------QNWERLWGCLRCGSKGSRILVTTRKVKVAIAI----GT------TKSNIIPIELLSDE 72 (698)
Q Consensus 10 kr~LlVLDdvw~~~~-------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~----~~------~~~~~~~v~~L~~~ 72 (698)
++++||+||++.-+. ..+..+...... .++.++|+|++...+...+ .. .....+++.+|+.+
T Consensus 128 ~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~ 206 (350)
T 2qen_A 128 GEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKD 206 (350)
T ss_dssp SCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHH
T ss_pred CCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHH
Confidence 389999999954221 223333333222 2467899999887643322 10 11236899999999
Q ss_pred hHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcccCCHHHHHH-HHhhhhcccccccccchhhH
Q 005407 73 DCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLRFKRKIEEWQR-VLESELWELEEVDKGLLGPL 151 (698)
Q Consensus 73 ~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~-~l~~~~~~~~~~~~~i~~~l 151 (698)
|+.+++....-..... .. .+.+.++++.++|.|+++..++..+....+...+-. +.+... ..+...+
T Consensus 207 e~~~~l~~~~~~~~~~--~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l 274 (350)
T 2qen_A 207 TSVEFLKRGFREVNLD--VP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAK-------GLIMGEL 274 (350)
T ss_dssp HHHHHHHHHHHTTTCC--CC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCC--CC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHH-------HHHHHHH
Confidence 9999998653221111 01 246788999999999999999876532222222211 111100 0011111
Q ss_pred h-hhccCCChhHHHHHhhhcCCCCCCccCHHHHHHHHHhcCccccCCCccHHHHHHHHHHHHHhCCCcccccccCCCCee
Q 005407 152 L-LSYRDLPPPLKKCFLYCAIFPKDSMLEKDKLIRLWMAQDYLKVKGREDMEVVGEEYFESLAMHSLFQDFERSEHDGRK 230 (698)
Q Consensus 152 ~-~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~Li~~wi~eg~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~ 230 (698)
. ..+ . ++..+..+..+|. +. .....+........ ++.. ......+++.|...+++.... +
T Consensus 275 ~~l~~-~-~~~~~~~l~~la~---g~-~~~~~l~~~~~~~~-----~~~~-~~~~~~~l~~L~~~gli~~~~-----~-- 335 (350)
T 2qen_A 275 EELRR-R-SPRYVDILRAIAL---GY-NRWSLIRDYLAVKG-----TKIP-EPRLYALLENLKKMNWIVEED-----N-- 335 (350)
T ss_dssp HHHHH-H-CHHHHHHHHHHHT---TC-CSHHHHHHHHHHTT-----CCCC-HHHHHHHHHHHHHTTSEEEET-----T--
T ss_pred HHHHh-C-ChhHHHHHHHHHh---CC-CCHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHhCCCEEecC-----C--
Confidence 1 112 2 6788889988887 22 34455544332211 0111 233567889999999997541 1
Q ss_pred EEEEEe-chhHHHHH
Q 005407 231 IIRCKM-HDIVHDFS 244 (698)
Q Consensus 231 ~~~~~~-hdlv~~~~ 244 (698)
.+.+ |.+++.+.
T Consensus 336 --~y~~~~p~~~~~~ 348 (350)
T 2qen_A 336 --TYKIADPVVATVL 348 (350)
T ss_dssp --EEEESSHHHHHHH
T ss_pred --EEEEecHHHHHHH
Confidence 3444 55666553
No 156
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.74 E-value=0.00045 Score=70.70 Aligned_cols=200 Identities=11% Similarity=0.039 Sum_probs=111.7
Q ss_pred ceEEEEEeCCCCCCh---hhH-HHHHhhcCCCCCCcEEEEEeCchHHHHHh----C----C--CCccceeccCCChHhHH
Q 005407 10 KKFFLVLDDVWTEEP---QNW-ERLWGCLRCGSKGSRILVTTRKVKVAIAI----G----T--TKSNIIPIELLSDEDCW 75 (698)
Q Consensus 10 kr~LlVLDdvw~~~~---~~~-~~l~~~~~~~~~gs~IiiTTR~~~v~~~~----~----~--~~~~~~~v~~L~~~~a~ 75 (698)
++++||+||++.-+. .+| ..+...... .++.++|+|+|.......+ . . .....+++.+|+.+++.
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAI 215 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHH
Confidence 489999999943211 122 233222221 2467899999987653322 1 0 11137899999999999
Q ss_pred HHHHHHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhcccCCHHHHHHHHhhhhcccccccccchhhHh-hh
Q 005407 76 SIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLRFKRKIEEWQRVLESELWELEEVDKGLLGPLL-LS 154 (698)
Q Consensus 76 ~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~-~s 154 (698)
+++.......... .. +. .+|++.|+|.|+++..++..+....+...|-..+-. .....+...+. ..
T Consensus 216 ~~l~~~~~~~~~~---~~---~~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~ 282 (357)
T 2fna_A 216 EFLRRGFQEADID---FK---DY-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLE------YAKKLILKEFENFL 282 (357)
T ss_dssp HHHHHHHHHHTCC---CC---CH-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC---CC---cH-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 9998754211111 11 12 789999999999999999876543333333211100 00001111121 11
Q ss_pred cc--CCChhHHHHHhhhcCCCCCCccCHHHHHHHHH-hcCccccCCCccHHHHHHHHHHHHHhCCCcccccccCCCCeeE
Q 005407 155 YR--DLPPPLKKCFLYCAIFPKDSMLEKDKLIRLWM-AQDYLKVKGREDMEVVGEEYFESLAMHSLFQDFERSEHDGRKI 231 (698)
Q Consensus 155 y~--~L~~~~k~~fl~~a~fp~~~~i~~~~Li~~wi-~eg~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~ 231 (698)
++ .+++..+..+..+|+ +. ....+..... ..|. . .. ......+++.|+..+++.... +
T Consensus 283 ~~~~~l~~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~--~---~~-~~~~~~~L~~L~~~gli~~~~-----~--- 343 (357)
T 2fna_A 283 HGREIARKRYLNIMRTLSK---CG--KWSDVKRALELEEGI--E---IS-DSEIYNYLTQLTKHSWIIKEG-----E--- 343 (357)
T ss_dssp TTCGGGHHHHHHHHHHHTT---CB--CHHHHHHHHHHHHCS--C---CC-HHHHHHHHHHHHHTTSEEESS-----S---
T ss_pred hccccccHHHHHHHHHHHc---CC--CHHHHHHHHHHhcCC--C---CC-HHHHHHHHHHHHhCCCEEecC-----C---
Confidence 21 577888999999997 22 4444433211 1120 0 01 233567889999999997542 1
Q ss_pred EEEE-echhHHHH
Q 005407 232 IRCK-MHDIVHDF 243 (698)
Q Consensus 232 ~~~~-~hdlv~~~ 243 (698)
.++ .|.+++++
T Consensus 344 -~y~f~~~~~~~~ 355 (357)
T 2fna_A 344 -KYCPSEPLISLA 355 (357)
T ss_dssp -CEEESSHHHHHH
T ss_pred -EEEecCHHHHHh
Confidence 234 46677654
No 157
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.49 E-value=0.00035 Score=67.09 Aligned_cols=107 Identities=11% Similarity=0.077 Sum_probs=75.9
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchHHH-HHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKVA-IAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.+++.+||+||++.-+...+..+...+.....+.++|+||+..... ...... ...+++++++.++..+++...+....
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r-~~~i~l~~l~~~e~~~~l~~~~~~~~ 202 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR-CLQFHLKALDVEQIRHQLEHILNEEH 202 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCCHHHHHHHHHHHHHHTT
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHH-hhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 4578999999996655667777777766656678899998765421 111111 24799999999999999998875433
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLL 120 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L 120 (698)
... . .+....+++.|+|.|..+..+...+
T Consensus 203 ~~~--~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 203 IAH--E---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CCB--C---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCC--C---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 221 1 2457789999999999988776543
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.48 E-value=0.00099 Score=69.21 Aligned_cols=124 Identities=10% Similarity=0.136 Sum_probs=65.3
Q ss_pred CCCCCCCceEEEEeecCCCCCCCCchhccccCccEEEEcCCCCCCcCC--CCCCCCCcceeeccCCcceeeeCccccCCC
Q 005407 498 LQPPRSLEKLEILAYEGDTIPPTSNWMLSLTKLRVLTLRHCFLCECLP--CLGKLPCLETLTLEGMTSVKRLGNEFLGIA 575 (698)
Q Consensus 498 ~~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~c~~~~~l~--~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~ 575 (698)
+..+..|+.+.+.+.. ..+. ...+.++.+|+.+.+.. .+..++ .+.++.+|+.+.|.+ +++.++...+
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~--~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF--- 330 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIG--TGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAF--- 330 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEEC--TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTT---
T ss_pred eeecccccEEeccccc-ceec--CcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHh---
Confidence 3445566666553211 1111 23345677888888754 233343 567788888888863 4677765443
Q ss_pred ccccccccccccccccccCcCCCcccccccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCccccCCCCcce
Q 005407 576 EDDQARGDQAETASSIIRDTAFPRLETLIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDK 655 (698)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~l~~L~~ 655 (698)
..+.+|+.+.|-. +++.+.. .....+++|+.+.+.+.. ..+ ..+..+.+|+.
T Consensus 331 -------------------~~C~~L~~i~ip~--sv~~I~~----~aF~~C~~L~~i~~~~~~--~~~-~~~~~~~~L~~ 382 (394)
T 4gt6_A 331 -------------------AGCEQLERIAIPS--SVTKIPE----SAFSNCTALNNIEYSGSR--SQW-NAISTDSGLQN 382 (394)
T ss_dssp -------------------TTCTTCCEEEECT--TCCBCCG----GGGTTCTTCCEEEESSCH--HHH-HTCBCCCCC--
T ss_pred -------------------hCCCCCCEEEECc--ccCEEhH----hHhhCCCCCCEEEECCce--eeh-hhhhccCCCCE
Confidence 3466777777742 4555543 234467788888776521 111 12333556666
Q ss_pred EEEc
Q 005407 656 LLIY 659 (698)
Q Consensus 656 L~i~ 659 (698)
+.+.
T Consensus 383 i~i~ 386 (394)
T 4gt6_A 383 LPVA 386 (394)
T ss_dssp ----
T ss_pred EEeC
Confidence 6553
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.46 E-value=5.2e-05 Score=77.37 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=17.6
Q ss_pred ccCccEEEEcCCCCCCc----CC-CCCCCCCcceeeccCC
Q 005407 527 LTKLRVLTLRHCFLCEC----LP-CLGKLPCLETLTLEGM 561 (698)
Q Consensus 527 l~~L~~L~L~~c~~~~~----l~-~l~~L~~L~~L~L~~c 561 (698)
+++|+.|+|+.|..... ++ .+..+++|+.|+|++|
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 45666666655543221 11 2234566666666654
No 160
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.38 E-value=3.7e-05 Score=79.08 Aligned_cols=64 Identities=20% Similarity=0.102 Sum_probs=32.0
Q ss_pred chhhcccccCceEeccccccccc-----cchhhhcCCCCcEeeccCCCCCc-----ccchhhhccccCCceecCCc
Q 005407 333 PKGIKKLIHLRYLALGWNPWIKE-----LPEALCELCNLQTLDVSGCDNLK-----RLPERIGELINLRHLMNSRQ 398 (698)
Q Consensus 333 p~~i~~l~~L~~L~L~~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~-----~lp~~i~~l~~L~~L~l~~~ 398 (698)
+..+..+++|++|+|++|. +.. ++..+...++|++|+|++|. +. .++..+...++|++|++++|
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 3334455556666666555 432 23344455556666665554 32 22333444455666666555
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.37 E-value=2.5e-05 Score=80.42 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=84.6
Q ss_pred CCcceEEEecCccchhhhcccccccccCccceeeeCC--CCcc-----cchhh-cccccCceEeccccccccc-----cc
Q 005407 291 ETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGP--PVRK-----IPKGI-KKLIHLRYLALGWNPWIKE-----LP 357 (698)
Q Consensus 291 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~-----lp~~i-~~l~~L~~L~L~~~~~l~~-----lp 357 (698)
.++|+.|+++++....... ......+++|+.|+++ .+.. +...+ ....+|++|+|++|. ++. ++
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~--~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~ 176 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGL--RTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLM 176 (372)
T ss_dssp SSCEEEEECTTCCCCHHHH--HHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHH--HHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHH
Confidence 3678899998886543221 2223455678888888 2321 22222 245789999999998 653 56
Q ss_pred hhhhcCCCCcEeeccCCCCCc-----ccchhhhccccCCceecCCccCCC----cCCcCCCCCCCCCccCceeccC
Q 005407 358 EALCELCNLQTLDVSGCDNLK-----RLPERIGELINLRHLMNSRQDDSS----YMPRGMERLTSLRTLGSFVASR 424 (698)
Q Consensus 358 ~~~~~l~~L~~L~l~~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~----~~p~~i~~L~~L~~L~~~~~~~ 424 (698)
..+..+++|++|+|++|. +. .++..+...++|+.|++++|.... .++..+...++|++|++..+..
T Consensus 177 ~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 666788899999999987 54 345667778899999999884321 1223344557777777665544
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.31 E-value=0.015 Score=60.11 Aligned_cols=108 Identities=13% Similarity=0.134 Sum_probs=74.8
Q ss_pred hhccccCccEEEEcCCCCCCcCCCCCCCCCcceeeccCCcceeeeCccccCCCccccccccccccccccccCcCCCcccc
Q 005407 523 WMLSLTKLRVLTLRHCFLCECLPCLGKLPCLETLTLEGMTSVKRLGNEFLGIAEDDQARGDQAETASSIIRDTAFPRLET 602 (698)
Q Consensus 523 ~~~~l~~L~~L~L~~c~~~~~l~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 602 (698)
.+..+.+|+.+.+.+....-.-..+.++++|+.+.+. ..++.++...+ ..+.+|+.
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF----------------------~~c~~L~~ 315 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS--SRITELPESVF----------------------AGCISLKS 315 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC--TTCCEECTTTT----------------------TTCTTCCE
T ss_pred eeeecccccEEecccccceecCcccccccccccccCC--CcccccCceee----------------------cCCCCcCE
Confidence 3456788999988654221122256778899999986 34777876544 35678888
Q ss_pred cccccccccccCcccccCCCcCCCCccceeeeccCCCCCCCCc-cccCCCCcceEEEccCc
Q 005407 603 LIFLLMTNWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPD-YILGSTSLDKLLIYYSR 662 (698)
Q Consensus 603 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~i~~C~ 662 (698)
+.|-+ +++.+.. .....+.+|+.+.|-. +++.+.. .+.++++|+.+++.+..
T Consensus 316 i~lp~--~v~~I~~----~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 316 IDIPE--GITQILD----DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EECCT--TCCEECT----TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEeCC--cccEehH----hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 88753 4555543 3455788999999954 5888865 46789999999998754
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.23 E-value=0.00015 Score=70.07 Aligned_cols=81 Identities=22% Similarity=0.245 Sum_probs=55.8
Q ss_pred cccccCceEecccccccccc---chhhhcCCCCcEeeccCCCCCcccchhhhccc--cCCceecCCccCCCcCCc-----
Q 005407 337 KKLIHLRYLALGWNPWIKEL---PEALCELCNLQTLDVSGCDNLKRLPERIGELI--NLRHLMNSRQDDSSYMPR----- 406 (698)
Q Consensus 337 ~~l~~L~~L~L~~~~~l~~l---p~~~~~l~~L~~L~l~~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~p~----- 406 (698)
..+++|+.|+|++|. +..+ |..+..+++|++|+|++|. +..+ ..+..+. +|++|++++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 457788888888887 6654 3556788888888888876 6655 3355555 888888888865554542
Q ss_pred --CCCCCCCCCccCce
Q 005407 407 --GMERLTSLRTLGSF 420 (698)
Q Consensus 407 --~i~~L~~L~~L~~~ 420 (698)
.+..+++|+.|+..
T Consensus 244 ~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHCTTCCEESSC
T ss_pred HHHHHHCcccCeECCc
Confidence 24567777777654
No 164
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.20 E-value=0.00023 Score=68.76 Aligned_cols=77 Identities=19% Similarity=0.190 Sum_probs=47.1
Q ss_pred ccCccceeeeCC--CCc---ccchhhcccccCceEeccccccccccchhhhcCC--CCcEeeccCCCCCcccch------
Q 005407 316 DRLTCLRSIDGP--PVR---KIPKGIKKLIHLRYLALGWNPWIKELPEALCELC--NLQTLDVSGCDNLKRLPE------ 382 (698)
Q Consensus 316 ~~l~~L~~L~l~--~~~---~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~--~L~~L~l~~~~~l~~lp~------ 382 (698)
.+++.|+.|+++ .+. .+|..+..+++|++|+|++|. +..+.. +..+. +|++|+|.+|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchh-hhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456667777776 333 344556677777777777777 666532 55555 777777777763333441
Q ss_pred -hhhccccCCcee
Q 005407 383 -RIGELINLRHLM 394 (698)
Q Consensus 383 -~i~~l~~L~~L~ 394 (698)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 256677777775
No 165
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.18 E-value=0.00022 Score=65.24 Aligned_cols=110 Identities=16% Similarity=0.084 Sum_probs=61.0
Q ss_pred ccCCCCcceEEEecCc-cchhhh-cccccccccCccceeeeCCC--Cc-----ccchhhcccccCceEeccccccccc--
Q 005407 287 FVYNETKLRSLAVPRR-LYYKRT-IASSKLFDRLTCLRSIDGPP--VR-----KIPKGIKKLIHLRYLALGWNPWIKE-- 355 (698)
Q Consensus 287 ~~~~~~~L~~L~l~~~-~~~~~~-~~~~~~~~~l~~L~~L~l~~--~~-----~lp~~i~~l~~L~~L~L~~~~~l~~-- 355 (698)
.+...+.|+.|+++++ ...... ..+...+...+.|+.|+++. +. .+...+....+|++|+|++|. +..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHH
Confidence 3445677788888776 443321 11233345556666666662 21 233444555667777777776 543
Q ss_pred ---cchhhhcCCCCcEeec--cCCCCCcc-----cchhhhccccCCceecCCc
Q 005407 356 ---LPEALCELCNLQTLDV--SGCDNLKR-----LPERIGELINLRHLMNSRQ 398 (698)
Q Consensus 356 ---lp~~~~~l~~L~~L~l--~~~~~l~~-----lp~~i~~l~~L~~L~l~~~ 398 (698)
+...+...++|++|+| ++|. +.. +...+...++|++|++++|
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 4455566667777777 5554 322 3334445566777766655
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.69 E-value=0.043 Score=56.32 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=6.0
Q ss_pred cccCccceeeeCC
Q 005407 315 FDRLTCLRSIDGP 327 (698)
Q Consensus 315 ~~~l~~L~~L~l~ 327 (698)
|.++..|+.+.+.
T Consensus 65 F~~C~~L~~I~lp 77 (379)
T 4h09_A 65 FNSCYNMTKVTVA 77 (379)
T ss_dssp TTTCTTCCEEEEC
T ss_pred hhCCCCCCEEEeC
Confidence 4444444444443
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.54 E-value=0.055 Score=55.50 Aligned_cols=119 Identities=8% Similarity=0.012 Sum_probs=60.9
Q ss_pred cceEEEEEccCCCcccCCcccCCCCcceEEEecCccchhhhcccccccccCccceeeeCCCCcccchhhcccccCceEec
Q 005407 268 KARHLMIMGEMSKEVPFPSFVYNETKLRSLAVPRRLYYKRTIASSKLFDRLTCLRSIDGPPVRKIPKGIKKLIHLRYLAL 347 (698)
Q Consensus 268 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~lp~~i~~l~~L~~L~L 347 (698)
+++.+.+...-. .-....|.+|.+|+.+.+.... .......|.++....+.....+..++.......+|+.+.+
T Consensus 47 ~i~~v~ip~~vt--~Ig~~aF~~C~~L~~I~lp~~v----~~Ig~~aF~~c~l~~i~~~~~l~~I~~~aF~~~~L~~i~l 120 (379)
T 4h09_A 47 RISEVRVNSGIT--SIGEANFNSCYNMTKVTVASTV----TSIGDGAFADTKLQSYTGMERVKKFGDYVFQGTDLDDFEF 120 (379)
T ss_dssp GCSEEEECTTEE--EECTTTTTTCTTCCEEEECTTC----CEECTTTTTTCCCCEEEECTTCCEECTTTTTTCCCSEEEC
T ss_pred CCEEEEeCCCcc--ChHHHHhhCCCCCCEEEeCCcc----eEechhhhcCCCCceEECCceeeEeccceeccCCcccccC
Confidence 455565543322 1235578889999999987542 1112344666543333333366666655333447888887
Q ss_pred cccccccccchhhhcCCCCcEeeccCCCCCcccch-hhhccccCCceecC
Q 005407 348 GWNPWIKELPEALCELCNLQTLDVSGCDNLKRLPE-RIGELINLRHLMNS 396 (698)
Q Consensus 348 ~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~i~~l~~L~~L~l~ 396 (698)
..+ +..+....-.-.+|+...+... +..+.. .+....+++.+.+.
T Consensus 121 p~~--~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~ 166 (379)
T 4h09_A 121 PGA--TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVS 166 (379)
T ss_dssp CTT--CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEEC
T ss_pred CCc--cccccccccccceeeeeeccce--eeccccchhcccccccccccc
Confidence 654 4455443333335555554431 333322 23444555555443
No 168
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.43 E-value=0.0086 Score=56.14 Aligned_cols=105 Identities=12% Similarity=0.004 Sum_probs=70.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchHH-HHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKV-AIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++.+||+||++.-....++.+...+.....+.++|+||+.... ....... -..+++.+++.++..+++...+.....
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r-~~~i~~~~~~~~~~~~~l~~~~~~~~~ 179 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR-CAVFRFKPVPKEAMKKRLLEICEKEGV 179 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh-CceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 67899999999665555566666666555667889999887532 1111111 127999999999999999987754322
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHHHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVKTLGSL 119 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~ 119 (698)
.. . .+....+++.++|.|..+..+...
T Consensus 180 ~~--~---~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 180 KI--T---EDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp CB--C---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CC--C---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 21 1 235677889999999865554433
No 169
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.41 E-value=0.00097 Score=60.90 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=54.7
Q ss_pred cccccCccceeeeCCCCc--------ccchhhcccccCceEeccccccccc-----cchhhhcCCCCcEeeccCCCCCcc
Q 005407 313 KLFDRLTCLRSIDGPPVR--------KIPKGIKKLIHLRYLALGWNPWIKE-----LPEALCELCNLQTLDVSGCDNLKR 379 (698)
Q Consensus 313 ~~~~~l~~L~~L~l~~~~--------~lp~~i~~l~~L~~L~L~~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~~ 379 (698)
..+...+.|+.|+++... .+...+....+|++|+|++|. +.. +...+...++|++|+|++|. +..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~ 107 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-ISG 107 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence 345666777777777441 233445566778888888887 542 44556666778888888876 432
Q ss_pred -----cchhhhccccCCceec--CCc
Q 005407 380 -----LPERIGELINLRHLMN--SRQ 398 (698)
Q Consensus 380 -----lp~~i~~l~~L~~L~l--~~~ 398 (698)
+...+...+.|++|++ ++|
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCC
Confidence 4555666677888888 555
No 170
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.31 E-value=0.078 Score=54.40 Aligned_cols=194 Identities=11% Similarity=0.005 Sum_probs=105.7
Q ss_pred CCceEEEEEeCCCCCChh--hHHHHHhhcCCC-----CCCcEEEEEeCchH--------HHHHhCCCCccceeccCCChH
Q 005407 8 EGKKFFLVLDDVWTEEPQ--NWERLWGCLRCG-----SKGSRILVTTRKVK--------VAIAIGTTKSNIIPIELLSDE 72 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~--~~~~l~~~~~~~-----~~gs~IiiTTR~~~--------v~~~~~~~~~~~~~v~~L~~~ 72 (698)
.+++.+|||||+..-... ..+.+...+.+. ..+..+|.||+... +...+. ...+.+++++.+
T Consensus 128 ~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~---~~~i~l~~l~~~ 204 (387)
T 2v1u_A 128 LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLG---EVELVFPPYTAP 204 (387)
T ss_dssp SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTT---SEECCBCCCCHH
T ss_pred cCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCC---CeEEeeCCCCHH
Confidence 356899999999432111 222232222211 34567888887652 222221 137999999999
Q ss_pred hHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhC---CCh-HHHHHHHHHhc-----c--cCCHHHHHHHHhhhhcccc
Q 005407 73 DCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCK---GLP-LAVKTLGSLLR-----F--KRKIEEWQRVLESELWELE 141 (698)
Q Consensus 73 ~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~---GlP-Lal~~~g~~L~-----~--~~~~~~w~~~l~~~~~~~~ 141 (698)
+..+++...+.......... .+....++++++ |.| .|+.++..+.. . .-+.+.+..++....
T Consensus 205 ~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~---- 277 (387)
T 2v1u_A 205 QLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE---- 277 (387)
T ss_dssp HHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh----
Confidence 99999998753211100111 235667778887 999 44444333321 1 124556655555321
Q ss_pred cccccchhhHhhhccCCChhHHHHHhhhcCCCCC-CccCHHHHHHHH----HhcCccccCCCccHHHHHHHHHHHHHhCC
Q 005407 142 EVDKGLLGPLLLSYRDLPPPLKKCFLYCAIFPKD-SMLEKDKLIRLW----MAQDYLKVKGREDMEVVGEEYFESLAMHS 216 (698)
Q Consensus 142 ~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~-~~i~~~~Li~~w----i~eg~~~~~~~~~~~~~~~~~l~~L~~~~ 216 (698)
...+.-++..++.+.+..++.++....+ ..+....+.+.. ...| ... -.......++..|...+
T Consensus 278 ------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~L~~~g 346 (387)
T 2v1u_A 278 ------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEH----VTLRRVSGIISELDMLG 346 (387)
T ss_dssp ------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCC----CCHHHHHHHHHHHHHTT
T ss_pred ------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCC----CCHHHHHHHHHHHHhCC
Confidence 1235556788999888877777633323 234444333322 1122 111 12345667889999999
Q ss_pred Cccccc
Q 005407 217 LFQDFE 222 (698)
Q Consensus 217 ll~~~~ 222 (698)
+++...
T Consensus 347 li~~~~ 352 (387)
T 2v1u_A 347 IVKSRV 352 (387)
T ss_dssp SEEEEE
T ss_pred CeEEEe
Confidence 998653
No 171
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.29 E-value=0.047 Score=56.08 Aligned_cols=201 Identities=13% Similarity=-0.004 Sum_probs=108.3
Q ss_pred hhhhcCCceEEEEEeCCCCCChhh-HHH-HHhhcCCCCCCcEEEEEeCchHH----HHHhCCCCccceeccCCChHhHHH
Q 005407 3 LHESIEGKKFFLVLDDVWTEEPQN-WER-LWGCLRCGSKGSRILVTTRKVKV----AIAIGTTKSNIIPIELLSDEDCWS 76 (698)
Q Consensus 3 l~~~L~~kr~LlVLDdvw~~~~~~-~~~-l~~~~~~~~~gs~IiiTTR~~~v----~~~~~~~~~~~~~v~~L~~~~a~~ 76 (698)
+.+.++.++.+|||||++.-.... .+. +...+... .+.+||+||+.... .......-...+++++++.++..+
T Consensus 126 l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~ 204 (384)
T 2qby_B 126 IKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKF 204 (384)
T ss_dssp HHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHH
T ss_pred HHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHH
Confidence 344566666699999994321111 122 22222222 67889999987521 111111101279999999999999
Q ss_pred HHHHHhhccCCchhhhhHHHHHHHHHHHHhC---CChH-HHHHHHHHh--c---ccCCHHHHHHHHhhhhcccccccccc
Q 005407 77 IFSQVALSIRSDIEEYKKFENIGRQIIGKCK---GLPL-AVKTLGSLL--R---FKRKIEEWQRVLESELWELEEVDKGL 147 (698)
Q Consensus 77 Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~---GlPL-al~~~g~~L--~---~~~~~~~w~~~l~~~~~~~~~~~~~i 147 (698)
+|..++.......... .+....+++.++ |.|. |+..+..+. + ..-+.+.+..+++...
T Consensus 205 il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~---------- 271 (384)
T 2qby_B 205 ILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE---------- 271 (384)
T ss_dssp HHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH----------
T ss_pred HHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh----------
Confidence 9998854211100111 235566777777 8876 444444332 1 1235566766665421
Q ss_pred hhhHhhhccCCChhHHHHHhhhcCCCCCCccCHHHHHHHHHhcCccccCCCccHHHHHHHHHHHHHhCCCcccccc
Q 005407 148 LGPLLLSYRDLPPPLKKCFLYCAIFPKDSMLEKDKLIRLWMAQDYLKVKGREDMEVVGEEYFESLAMHSLFQDFER 223 (698)
Q Consensus 148 ~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~Li~~wi~eg~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~ 223 (698)
...+..+++.|+...|..+..++....+..+. +.........| .. .. ......+++..|.+.+++.....
T Consensus 272 ~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~---~~-~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 272 QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK---PL-SYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC---CC-CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC---CC-CHHHHHHHHHHHHhCCCEEEEec
Confidence 13355677889988888777777611101111 11111111122 11 11 12345677899999999976543
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.99 E-value=0.034 Score=55.65 Aligned_cols=190 Identities=14% Similarity=0.022 Sum_probs=97.7
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhcCCCC------------------CCcEEEEEeCchHHH-HHhCCCCccceeccCCC
Q 005407 10 KKFFLVLDDVWTEEPQNWERLWGCLRCGS------------------KGSRILVTTRKVKVA-IAIGTTKSNIIPIELLS 70 (698)
Q Consensus 10 kr~LlVLDdvw~~~~~~~~~l~~~~~~~~------------------~gs~IiiTTR~~~v~-~~~~~~~~~~~~v~~L~ 70 (698)
+..+|+|||+..........+...+.... ++.++|.||...... ......-..++.+.+++
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence 56799999995544444444443332211 234677776643211 11111102379999999
Q ss_pred hHhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHHHhccc--------CCHHHHHHHHhhhhccccc
Q 005407 71 DEDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLLRFK--------RKIEEWQRVLESELWELEE 142 (698)
Q Consensus 71 ~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L~~~--------~~~~~w~~~l~~~~~~~~~ 142 (698)
.++..+++...+....... . .+....+++++.|.|-.+..+...+... -+.+....++..
T Consensus 170 ~~e~~~~l~~~~~~~~~~~--~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~------- 237 (324)
T 1hqc_A 170 PEELAQGVMRDARLLGVRI--T---EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA------- 237 (324)
T ss_dssp HHHHHHHHHHHHHTTTCCC--C---HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhcCCCC--C---HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-------
Confidence 9999999888765433221 1 2467788999999998887766544211 112222222221
Q ss_pred ccccchhhHhhhccCCChhHHHHHhhhcCCCCCCc-----------cCHHHHHH----HHHhcCccccC-CCccHHHHHH
Q 005407 143 VDKGLLGPLLLSYRDLPPPLKKCFLYCAIFPKDSM-----------LEKDKLIR----LWMAQDYLKVK-GREDMEVVGE 206 (698)
Q Consensus 143 ~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~-----------i~~~~Li~----~wi~eg~~~~~-~~~~~~~~~~ 206 (698)
+...+..++...+..+........+.. +.+..+.+ +-+..|++... .+..+.+.|.
T Consensus 238 --------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~ 309 (324)
T 1hqc_A 238 --------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAY 309 (324)
T ss_dssp --------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHH
T ss_pred --------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHH
Confidence 223345566666666655443322321 22222222 34455666432 2345556666
Q ss_pred HHHH-HHHhCCCcc
Q 005407 207 EYFE-SLAMHSLFQ 219 (698)
Q Consensus 207 ~~l~-~L~~~~ll~ 219 (698)
.+++ ++.+++|||
T Consensus 310 ~~~~~~~~~~~~~~ 323 (324)
T 1hqc_A 310 RHLGYPPPVGPLLE 323 (324)
T ss_dssp HHTTCCCCC-----
T ss_pred HHHhcCCCCCCCCC
Confidence 6665 666666665
No 173
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.63 E-value=0.13 Score=52.76 Aligned_cols=197 Identities=12% Similarity=0.036 Sum_probs=108.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCC----CCcEEEEEeCchHHHHHhCC-----CCccceeccCCChHhHHHHHH
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGS----KGSRILVTTRKVKVAIAIGT-----TKSNIIPIELLSDEDCWSIFS 79 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~----~gs~IiiTTR~~~v~~~~~~-----~~~~~~~v~~L~~~~a~~Lf~ 79 (698)
+++.+|||||++..+......+...+.... .+..||+||++......... .....+.+++++.++..+++.
T Consensus 124 ~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~ 203 (389)
T 1fnn_A 124 DLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILL 203 (389)
T ss_dssp TCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHH
T ss_pred CCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHH
Confidence 568899999996655555666655543321 46688888887654322110 001269999999999999998
Q ss_pred HHhhccCCchhhhhHHHHHHHHHHHHh---------CCChHHHHHHHHH-hc-----cc--CCHHHHHHHHhhhhccccc
Q 005407 80 QVALSIRSDIEEYKKFENIGRQIIGKC---------KGLPLAVKTLGSL-LR-----FK--RKIEEWQRVLESELWELEE 142 (698)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~i~~~c---------~GlPLal~~~g~~-L~-----~~--~~~~~w~~~l~~~~~~~~~ 142 (698)
..+.......... .+....+++++ .|.|-.+..+... .. .. -+.+....+....
T Consensus 204 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~------ 274 (389)
T 1fnn_A 204 DRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV------ 274 (389)
T ss_dssp HHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH------
T ss_pred HHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH------
Confidence 8764311100011 24667788888 7887544433322 21 11 1222222222211
Q ss_pred ccccchhhHhhhccCCChhHHHHHhhhcCCC---CCCccCHHHHHHHHHh----cCccccCCCccHHHHHHHHHHHHHhC
Q 005407 143 VDKGLLGPLLLSYRDLPPPLKKCFLYCAIFP---KDSMLEKDKLIRLWMA----QDYLKVKGREDMEVVGEEYFESLAMH 215 (698)
Q Consensus 143 ~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp---~~~~i~~~~Li~~wi~----eg~~~~~~~~~~~~~~~~~l~~L~~~ 215 (698)
....+.-.+..|+.+.+.++..++.+. .+..+....+...+.. .|. .. .+ .....+++..|.+.
T Consensus 275 ----~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~---~~-~~~~~~~l~~L~~~ 345 (389)
T 1fnn_A 275 ----LFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGE-RP---RV-HSQLWSYLNDLREK 345 (389)
T ss_dssp ----SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTC-CC---CC-HHHHHHHHHHHHHT
T ss_pred ----hhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCC-CC---CC-HHHHHHHHHHHHhC
Confidence 011223345667888887777676543 2224555555544322 121 11 11 23355778999999
Q ss_pred CCcccccc
Q 005407 216 SLFQDFER 223 (698)
Q Consensus 216 ~ll~~~~~ 223 (698)
+++.....
T Consensus 346 gli~~~~~ 353 (389)
T 1fnn_A 346 GIVETRQN 353 (389)
T ss_dssp TSSEEEEC
T ss_pred CCeEEeee
Confidence 99987543
No 174
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.48 E-value=0.025 Score=56.50 Aligned_cols=106 Identities=19% Similarity=0.160 Sum_probs=69.1
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchH-HHHHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVK-VAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.+++.+||+||++.-....++.+...+.....++++|+||+... +...+... ...+++.+++.++..+++...+...+
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr-~~~i~~~~~~~~~~~~~l~~~~~~~~ 183 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ-CAILRYSKLSDEDVLKRLLQIIKLED 183 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh-ceEEeecCCCHHHHHHHHHHHHHHcC
Confidence 45689999999966544555555555544456778888887643 21221111 23799999999999999998764332
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChH-HHHHHHHH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPL-AVKTLGSL 119 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPL-al~~~g~~ 119 (698)
... . .+....+++.|+|.|. |+..+...
T Consensus 184 ~~~--~---~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 184 VKY--T---NDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCB--C---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCC--C---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 211 1 2456789999999995 45555433
No 175
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.72 E-value=0.13 Score=51.37 Aligned_cols=106 Identities=14% Similarity=0.029 Sum_probs=70.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchHH-HHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVKV-AIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++.+||+||++.-....+..+...+.....++++|+||....- ....... ...+++.+++.++..+++...+.....
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr-~~~~~~~~l~~~~~~~~l~~~~~~~~~ 187 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR-CAIFRFRPLRDEDIAKRLRYIAENEGL 187 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT-EEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh-CcEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 56889999999665556666676666655667889998876431 1111111 126899999999999999887654332
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVKTLGSLL 120 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L 120 (698)
. .. .+....+++.++|.|..+..+....
T Consensus 188 ~--~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 188 E--LT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp E--EC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C--CC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 2 11 2356778889999998665554433
No 176
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.08 E-value=0.32 Score=49.68 Aligned_cols=197 Identities=12% Similarity=-0.001 Sum_probs=102.0
Q ss_pred CceEEEEEeCCCCCC----hhhHHHHHhhcCC-CCCCcEEEEEeCchHHHHHhC-----CCCccceeccCCChHhHHHHH
Q 005407 9 GKKFFLVLDDVWTEE----PQNWERLWGCLRC-GSKGSRILVTTRKVKVAIAIG-----TTKSNIIPIELLSDEDCWSIF 78 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~----~~~~~~l~~~~~~-~~~gs~IiiTTR~~~v~~~~~-----~~~~~~~~v~~L~~~~a~~Lf 78 (698)
+++.+|||||++.-. ...+..+...+.. ...+..+|+||+.......+. ......+++++++.++..+++
T Consensus 127 ~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il 206 (386)
T 2qby_A 127 GSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDIL 206 (386)
T ss_dssp CSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHH
T ss_pred CCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHH
Confidence 458999999994321 2234444433322 233557788888654322111 111137999999999999999
Q ss_pred HHHhhccCCchhhhhHHHHHHHHHHHHhC---CChHHH-HHHHHHhc-----c--cCCHHHHHHHHhhhhcccccccccc
Q 005407 79 SQVALSIRSDIEEYKKFENIGRQIIGKCK---GLPLAV-KTLGSLLR-----F--KRKIEEWQRVLESELWELEEVDKGL 147 (698)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~i~~~c~---GlPLal-~~~g~~L~-----~--~~~~~~w~~~l~~~~~~~~~~~~~i 147 (698)
...+.......... .+....+++.++ |.|..+ .++..+.. . .-+.+.++.++....
T Consensus 207 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~---------- 273 (386)
T 2qby_A 207 TKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE---------- 273 (386)
T ss_dssp HHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH----------
T ss_pred HHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh----------
Confidence 88653211110111 235566777776 998844 43333221 0 123444444444311
Q ss_pred hhhHhhhccCCChhHHHHHhhhcCCCC-CC-ccCHHHHHHHH--HhcCccccCCCccHHHHHHHHHHHHHhCCCcccc
Q 005407 148 LGPLLLSYRDLPPPLKKCFLYCAIFPK-DS-MLEKDKLIRLW--MAQDYLKVKGREDMEVVGEEYFESLAMHSLFQDF 221 (698)
Q Consensus 148 ~~~l~~sy~~L~~~~k~~fl~~a~fp~-~~-~i~~~~Li~~w--i~eg~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 221 (698)
...+.-.+..++...+..+..++...+ +. .+....+.+.. +++.. . .... .......+++.|...+++...
T Consensus 274 ~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~-g-~~~~-~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 274 RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL-G-VEAV-TQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH-T-CCCC-CHHHHHHHHHHHHHHTSEEEE
T ss_pred hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc-C-CCCC-CHHHHHHHHHHHHhCCCEEEE
Confidence 224555677888888888777774332 21 12333332221 11111 0 0011 123345678899999999754
No 177
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.92 E-value=0.5 Score=48.00 Aligned_cols=104 Identities=12% Similarity=0.102 Sum_probs=68.4
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchH-HHHHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVK-VAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.+++.+||+||+..-+...+..+...+.....+..+|++|.... +....... ...+++.+++.++..+++...+...+
T Consensus 117 ~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr-~~~i~~~~l~~~~~~~~l~~~~~~~~ 195 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR-CLQFHLKALDVEQIRHQLEHILNEEH 195 (373)
T ss_dssp SSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTT-SEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhh-eeEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 35678999999955455566667666655555677888776533 21111111 23799999999999999987764322
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChHHHHHHH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPLAVKTLG 117 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g 117 (698)
... . .+....+++.++|.|..+..+.
T Consensus 196 ~~~--~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 196 IAH--E---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CCB--C---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCC--C---HHHHHHHHHHCCCCHHHHHHHH
Confidence 210 1 2356778999999998776654
No 178
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.71 E-value=0.19 Score=42.30 Aligned_cols=34 Identities=26% Similarity=0.251 Sum_probs=17.8
Q ss_pred cCceEeccccccccccchh-hhcCCCCcEeeccCCC
Q 005407 341 HLRYLALGWNPWIKELPEA-LCELCNLQTLDVSGCD 375 (698)
Q Consensus 341 ~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 375 (698)
+|++|+|++|. |..+|.. +..+.+|++|+|.+|.
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 45555555555 5555443 3445555555555543
No 179
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.78 E-value=0.29 Score=41.19 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=42.1
Q ss_pred ceEecccccccc--ccchhhhcCCCCcEeeccCCCCCcccchh-hhccccCCceecCCcc
Q 005407 343 RYLALGWNPWIK--ELPEALCELCNLQTLDVSGCDNLKRLPER-IGELINLRHLMNSRQD 399 (698)
Q Consensus 343 ~~L~L~~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 399 (698)
..++.++.. ++ .+|..+. .+|++|+|++|. +..+|.. +..+++|+.|++++|.
T Consensus 11 ~~v~Cs~~~-L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRG-LTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSC-CCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCC-CccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 367777777 77 8886443 479999999987 8888876 5789999999999884
No 180
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.31 E-value=1.2 Score=43.79 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=67.6
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchH-HHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVK-VAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++.++|+||+..-.......+...+.....+.++|+||.... +....... ...+++.+++.++..+++...+...+.
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr-~~~i~~~~~~~~~~~~~l~~~~~~~~~ 179 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR-CAVFRFKPVPKEAMKKRLLEICEKEGV 179 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT-CEEEECCCCCHHHHHHHHHHHHHTTCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh-CeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 5688999999954444445556666655556778888887643 22221111 237999999999999999887654332
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVKTLGS 118 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~ 118 (698)
.. . .+....+++.++|.+-.+..+-.
T Consensus 180 ~i--~---~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 180 KI--T---EDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp CB--C---HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred CC--C---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 21 1 23567788899999876554433
No 181
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.11 E-value=1.3 Score=41.32 Aligned_cols=102 Identities=10% Similarity=0.074 Sum_probs=59.3
Q ss_pred ceEEEEEeCCCCCChhh--HHHHHhhcCCC-CCC-cEEEEEeCc---------hHHHHHhCCCCccceeccCCChHhHHH
Q 005407 10 KKFFLVLDDVWTEEPQN--WERLWGCLRCG-SKG-SRILVTTRK---------VKVAIAIGTTKSNIIPIELLSDEDCWS 76 (698)
Q Consensus 10 kr~LlVLDdvw~~~~~~--~~~l~~~~~~~-~~g-s~IiiTTR~---------~~v~~~~~~~~~~~~~v~~L~~~~a~~ 76 (698)
+..+||+||+....... .+.+...+... ..+ .+||+||+. ..+...+.. ..++++++++.++..+
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~--~~~i~l~~~~~~~~~~ 181 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHW--GLTYQLQPMMDDEKLA 181 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHH--SEEEECCCCCGGGHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhc--CceEEeCCCCHHHHHH
Confidence 45689999995432222 23333322211 112 247887763 233333321 1379999999999999
Q ss_pred HHHHHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHHH
Q 005407 77 IFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLGS 118 (698)
Q Consensus 77 Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g~ 118 (698)
++...+...... .. .+....+++.+.|.+-.+..+-.
T Consensus 182 ~l~~~~~~~~~~--~~---~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 182 ALQRRAAMRGLQ--LP---EDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHHHTTCC--CC---HHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCC--CC---HHHHHHHHHHccCCHHHHHHHHH
Confidence 998876432221 11 24567788899998876655443
No 182
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.84 E-value=1.8 Score=43.40 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=65.1
Q ss_pred ceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchH-HHHHhCCCCccceeccCCChHhHHHHHHHHhhccCCc
Q 005407 10 KKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVK-VAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRSD 88 (698)
Q Consensus 10 kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~ 88 (698)
+.-++|+|++..-+......+...+....++..+|+||.+.. +....... -..+++.+++.++..+.+...+...+..
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR-~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQ-CLLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTT-SEEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhh-ceEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 566999999966555555556555544445678888887632 22222111 1379999999999999998876432221
Q ss_pred hhhhhHHHHHHHHHHHHhCCChHHHHHHH
Q 005407 89 IEEYKKFENIGRQIIGKCKGLPLAVKTLG 117 (698)
Q Consensus 89 ~~~~~~~~~~~~~i~~~c~GlPLal~~~g 117 (698)
. . -.+....|++.++|.+-.+..+-
T Consensus 213 ~--~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 213 L--E--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp E--C--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred C--C--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 0 1 02356778889999876555444
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=82.37 E-value=3.5 Score=42.80 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=61.0
Q ss_pred ceEEEEEeCCCCCCh--hhHHHHHhhcCC-CCCCcEEEEEeCc---------hHHHHHhCCCCccceeccCCChHhHHHH
Q 005407 10 KKFFLVLDDVWTEEP--QNWERLWGCLRC-GSKGSRILVTTRK---------VKVAIAIGTTKSNIIPIELLSDEDCWSI 77 (698)
Q Consensus 10 kr~LlVLDdvw~~~~--~~~~~l~~~~~~-~~~gs~IiiTTR~---------~~v~~~~~~~~~~~~~v~~L~~~~a~~L 77 (698)
+.-+|++||+..-.. ...+.+...+.. ...|..||+||.+ ..+..++.. +.++.+++++.++-.++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~--g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM--GLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHS--SBCCBCCCCCHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccC--CeEEEeCCCCHHHHHHH
Confidence 567999999943221 222333333321 2356789999886 334444543 23799999999999999
Q ss_pred HHHHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHH
Q 005407 78 FSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKT 115 (698)
Q Consensus 78 f~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 115 (698)
+...+...... .. .+....|++.+.|.+-.+..
T Consensus 272 L~~~~~~~~~~--i~---~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 272 ARKMLEIEHGE--LP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHHTCC--CC---TTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHHcCCC--CC---HHHHHHHHHhcCCCHHHHHH
Confidence 98877432221 11 13566788888888765443
No 184
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=81.08 E-value=7.2 Score=38.63 Aligned_cols=99 Identities=11% Similarity=0.039 Sum_probs=65.0
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchH-HHHHhCCCCccceeccCCChHhHHHHHHHHhhccC
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVK-VAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIR 86 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~ 86 (698)
.+++-++|+|++..........+...+.....+..+|++|.+.+ +...+... ...+++.+++.++..+.+...+ .
T Consensus 106 ~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SR-c~~~~~~~~~~~~~~~~L~~~~---~ 181 (334)
T 1a5t_A 106 LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR-CRLHYLAPPPEQYAVTWLSREV---T 181 (334)
T ss_dssp TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCCHHHHHHHHHHHC---C
T ss_pred cCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhc-ceeeeCCCCCHHHHHHHHHHhc---C
Confidence 35678899999954444445556666655556677777776643 33332221 2379999999999999888765 1
Q ss_pred CchhhhhHHHHHHHHHHHHhCCChHHHHHHH
Q 005407 87 SDIEEYKKFENIGRQIIGKCKGLPLAVKTLG 117 (698)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g 117 (698)
.+ .+.+..+++.++|.|..+..+.
T Consensus 182 ~~-------~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 182 MS-------QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp CC-------HHHHHHHHHHTTTCHHHHHHTT
T ss_pred CC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 11 1245678899999997655443
No 185
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=80.33 E-value=1.3 Score=40.12 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=5.6
Q ss_pred CCcceEEEecC
Q 005407 291 ETKLRSLAVPR 301 (698)
Q Consensus 291 ~~~L~~L~l~~ 301 (698)
-+.|+.|++.+
T Consensus 40 n~~L~~L~L~~ 50 (197)
T 1pgv_A 40 DTDLKEVNINN 50 (197)
T ss_dssp CSSCCEEECTT
T ss_pred CCCccEEECCC
Confidence 34455555554
No 186
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.35 E-value=6.4 Score=39.19 Aligned_cols=103 Identities=11% Similarity=0.034 Sum_probs=64.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchH-HHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVK-VAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+++-+|++|++..-.......+...+.......++|++|.... +....... ...+++.+++.++..+.+...+.....
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR-~~~i~~~~~~~~~~~~~l~~~~~~~~~ 210 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ-CSKFRFKALDASNAIDRLRFISEQENV 210 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH-SEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc-CceEEeCCCCHHHHHHHHHHHHHHhCC
Confidence 3556999999954444445556555554445667888775432 21111100 126899999999999999887643322
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHHHHHHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLAVKTLG 117 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLal~~~g 117 (698)
. .. .+....|++.++|.|-.+..+.
T Consensus 211 ~--i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 211 K--CD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp C--CC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred C--CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 1 11 2467789999999988655443
No 187
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=72.24 E-value=3.8 Score=36.94 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=30.8
Q ss_pred ccCccceeeeCCCCccc--------chhhcccccCceEecccccccc-----ccchhhhcCCCCcEeeccCCC
Q 005407 316 DRLTCLRSIDGPPVRKI--------PKGIKKLIHLRYLALGWNPWIK-----ELPEALCELCNLQTLDVSGCD 375 (698)
Q Consensus 316 ~~l~~L~~L~l~~~~~l--------p~~i~~l~~L~~L~L~~~~~l~-----~lp~~~~~l~~L~~L~l~~~~ 375 (698)
.+-..|+.|+++....+ -+.+..-..|+.|+|++|. +. .|...+..-+.|++|+|+.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 34455666666533222 2234444566667776666 43 233334444566666666655
No 188
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=71.97 E-value=22 Score=35.13 Aligned_cols=102 Identities=12% Similarity=-0.007 Sum_probs=66.8
Q ss_pred CCceEEEEEeCCCC-CChhhHHHHHhhcCCCCCCcEEEEEeCc-------hHHHHHhCCCCccceeccCCChHhHHHHHH
Q 005407 8 EGKKFFLVLDDVWT-EEPQNWERLWGCLRCGSKGSRILVTTRK-------VKVAIAIGTTKSNIIPIELLSDEDCWSIFS 79 (698)
Q Consensus 8 ~~kr~LlVLDdvw~-~~~~~~~~l~~~~~~~~~gs~IiiTTR~-------~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~ 79 (698)
-+++-++|+|++.. .....++.+...+....+++.+|++|.. +.+...+... ..+++..+++.++..+...
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr-~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANR-SVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTT-CEEEEECCCCTTHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhC-ceEEEeeCCCHHHHHHHHH
Confidence 45677888999844 3345677777666655567888877643 3455554322 2479999999999888887
Q ss_pred HHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHH
Q 005407 80 QVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKT 115 (698)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 115 (698)
+.+-..+.... .+.+..+++.++|-..++..
T Consensus 153 ~~~~~~g~~i~-----~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 153 ARAKQLNLELD-----DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHTTCEEC-----HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHcCCCCC-----HHHHHHHHHHhchHHHHHHH
Confidence 77644332211 24567788888887776654
No 189
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=69.27 E-value=17 Score=34.44 Aligned_cols=116 Identities=15% Similarity=0.103 Sum_probs=59.7
Q ss_pred CCceEEEEEeCCCCC---------Chhh-HHHHHhhcCC---CCCCcEEEEEeCchHHHHHhCCCC--ccceeccCCCh-
Q 005407 8 EGKKFFLVLDDVWTE---------EPQN-WERLWGCLRC---GSKGSRILVTTRKVKVAIAIGTTK--SNIIPIELLSD- 71 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~---------~~~~-~~~l~~~~~~---~~~gs~IiiTTR~~~v~~~~~~~~--~~~~~v~~L~~- 71 (698)
+.+..+|++||+..- .... .+.+...+.. .+....||.||...+......... ...++++++++
T Consensus 122 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r 201 (272)
T 1d2n_A 122 KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATG 201 (272)
T ss_dssp TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEH
T ss_pred hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHH
Confidence 356889999998220 0112 2333333332 223345777888776554422111 34688888988
Q ss_pred HhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCC------ChHHHHHHHHHhcccCCHHHHHHHHh
Q 005407 72 EDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKG------LPLAVKTLGSLLRFKRKIEEWQRVLE 134 (698)
Q Consensus 72 ~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~G------lPLal~~~g~~L~~~~~~~~w~~~l~ 134 (698)
++..+++.... . -+ .+....+++.+.| +.-++.++-.+- .......+..++.
T Consensus 202 ~~i~~i~~~~~-~--~~-------~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~-~~~~~~~~~~~~~ 259 (272)
T 1d2n_A 202 EQLLEALELLG-N--FK-------DKERTTIAQQVKGKKVWIGIKKLLMLIEMSL-QMDPEYRVRKFLA 259 (272)
T ss_dssp HHHHHHHHHHT-C--SC-------HHHHHHHHHHHTTSEEEECHHHHHHHHHHHT-TSCGGGHHHHHHH
T ss_pred HHHHHHHHhcC-C--CC-------HHHHHHHHHHhcCCCccccHHHHHHHHHHHh-hhchHHHHHHHHH
Confidence 55555555421 1 11 2345677778877 455555444433 2223344554443
No 190
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=69.21 E-value=65 Score=31.44 Aligned_cols=104 Identities=14% Similarity=0.148 Sum_probs=60.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCC------------------CCcEEEEEeCchHH-HHHhCCCCccceeccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGS------------------KGSRILVTTRKVKV-AIAIGTTKSNIIPIELL 69 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~------------------~gs~IiiTTR~~~v-~~~~~~~~~~~~~v~~L 69 (698)
.+..+|+||++..........+...+.... ++.++|.+|..... ....-..-...+++.++
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~ 184 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFY 184 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCC
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCc
Confidence 456789999996544444444544443221 12456666655321 11111111247999999
Q ss_pred ChHhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCCChHHHHHHH
Q 005407 70 SDEDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPLAVKTLG 117 (698)
Q Consensus 70 ~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~~g 117 (698)
+.++..+++...+...... .. .+....+++.+.|.|-.+..+.
T Consensus 185 ~~~e~~~il~~~~~~~~~~--~~---~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 185 KDSELALILQKAALKLNKT--CE---EKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCC--CC---HHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999998876543221 11 2456778889999985555443
No 191
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.37 E-value=32 Score=36.33 Aligned_cols=102 Identities=14% Similarity=0.185 Sum_probs=58.6
Q ss_pred CceEEEEEeCCCCCC---hhhHHHHHhhcCCCCCCcEEEEEeCchHH--HHHhCCCCccceeccCCChHhHHHHHHHHhh
Q 005407 9 GKKFFLVLDDVWTEE---PQNWERLWGCLRCGSKGSRILVTTRKVKV--AIAIGTTKSNIIPIELLSDEDCWSIFSQVAL 83 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~---~~~~~~l~~~~~~~~~gs~IiiTTR~~~v--~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~ 83 (698)
+++.+||+|+|..-. ...+..+...+.. .+..||+++.+... ....... ...+++++++.++..+.+...+.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r-~~~i~f~~~~~~~~~~~L~~i~~ 223 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRV-CLDIQFRRPDANSIKSRLMTIAI 223 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTT-SEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhc-eEEEEeCCCCHHHHHHHHHHHHH
Confidence 578899999994321 1223344333322 23346666654321 1112111 23689999999999999988765
Q ss_pred ccCCchhhhhHHHHHHHHHHHHhCC-ChHHHHHHHH
Q 005407 84 SIRSDIEEYKKFENIGRQIIGKCKG-LPLAVKTLGS 118 (698)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~i~~~c~G-lPLal~~~g~ 118 (698)
...... . .+....|++.++| ++-|+..+..
T Consensus 224 ~~~~~i--~---~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 224 REKFKL--D---PNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp HHTCCC--C---TTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred HcCCCC--C---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 433221 1 1356778899999 5556665543
No 192
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=53.32 E-value=15 Score=36.08 Aligned_cols=92 Identities=11% Similarity=0.112 Sum_probs=52.5
Q ss_pred eEEEEEeCCCCCCh--hhHHHHHhhcCC-CCCCcEEEEEeCc---------hHHHHHhCCCCccceeccCCChHhHHHHH
Q 005407 11 KFFLVLDDVWTEEP--QNWERLWGCLRC-GSKGSRILVTTRK---------VKVAIAIGTTKSNIIPIELLSDEDCWSIF 78 (698)
Q Consensus 11 r~LlVLDdvw~~~~--~~~~~l~~~~~~-~~~gs~IiiTTR~---------~~v~~~~~~~~~~~~~v~~L~~~~a~~Lf 78 (698)
.-+|++||+..-.. ...+.+...+.. ...|..||+||.. ..+..++.. ..++++++ +.++-.+++
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~--~~~i~l~~-~~~e~~~il 175 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEG--GILVEIEL-DNKTRFKII 175 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHT--SEEEECCC-CHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccC--ceEEEeCC-CHHHHHHHH
Confidence 56899999933211 112223333221 1245678888863 334444433 23799999 999999999
Q ss_pred HHHhhccCCchhhhhHHHHHHHHHHHHhCCChH
Q 005407 79 SQVALSIRSDIEEYKKFENIGRQIIGKCKGLPL 111 (698)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 111 (698)
...+...... .. .+....+++++ |..-
T Consensus 176 ~~~~~~~~~~--l~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 176 KEKLKEFNLE--LR---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHHTTCC--CC---HHHHHHHHHHC-SSHH
T ss_pred HHHHHhcCCC--CC---HHHHHHHHHhC-CCHH
Confidence 8887543322 11 23456677777 6543
No 193
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=49.30 E-value=46 Score=32.03 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=46.5
Q ss_pred eEEEEEeCCCCC---------ChhhHHHHHhhcCCCCCCcEEEEEeCchH----------HHHHhCCCCccceeccCCCh
Q 005407 11 KFFLVLDDVWTE---------EPQNWERLWGCLRCGSKGSRILVTTRKVK----------VAIAIGTTKSNIIPIELLSD 71 (698)
Q Consensus 11 r~LlVLDdvw~~---------~~~~~~~l~~~~~~~~~gs~IiiTTR~~~----------v~~~~~~~~~~~~~v~~L~~ 71 (698)
.-+|++|++..- .......+...+.....+..||.||.... +..++ ...+++++++.
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~----~~~i~~~~~~~ 206 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI----AHHIEFPDYSD 206 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE----EEEEEECCCCH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC----CeEEEcCCcCH
Confidence 348999999421 33444555555555555678888886543 22222 24799999999
Q ss_pred HhHHHHHHHHhhc
Q 005407 72 EDCWSIFSQVALS 84 (698)
Q Consensus 72 ~~a~~Lf~~~a~~ 84 (698)
++-.+++...+..
T Consensus 207 ~~~~~il~~~l~~ 219 (309)
T 3syl_A 207 EELFEIAGHMLDD 219 (309)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 194
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=47.54 E-value=25 Score=34.28 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=53.2
Q ss_pred CceEEEEEeCCCCCC-hhhHHHHHhhcCCCCCCcEEEEEeCchH-----HHHHhCCCCccceeccCCChHhHHHHHH---
Q 005407 9 GKKFFLVLDDVWTEE-PQNWERLWGCLRCGSKGSRILVTTRKVK-----VAIAIGTTKSNIIPIELLSDEDCWSIFS--- 79 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~-~~~~~~l~~~~~~~~~gs~IiiTTR~~~-----v~~~~~~~~~~~~~v~~L~~~~a~~Lf~--- 79 (698)
+++-+||+||+..-. ....+.+...+.....+.+||+||.... +..++ .++++++++.++-.+++.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~-----~~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC-----RVITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS-----EEEECCCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC-----cEEEeCCCCHHHHHHHHHHHH
Confidence 378899999994433 3344445444433334568888887643 22222 268999999888544332
Q ss_pred ----HHhhccCCchhhhhHHHHHHHHHHHHhCCChHH
Q 005407 80 ----QVALSIRSDIEEYKKFENIGRQIIGKCKGLPLA 112 (698)
Q Consensus 80 ----~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 112 (698)
..+....... .+ .+....+++.++|.+-.
T Consensus 179 ~~l~~~~~~~~~~~--~~--~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 179 RRLTEICKHEGIAI--AD--MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HHHHHHHHHHTCCB--SC--HHHHHHHHHHTCSCTTH
T ss_pred HHHHHHHHHcCCCC--Cc--HHHHHHHHHhCCCCHHH
Confidence 2222111110 00 14667788888876654
No 195
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=45.94 E-value=42 Score=31.87 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=41.6
Q ss_pred CCcEEEEEeCchHHHHH-h-CC-CCccceeccCCChHhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCC-ChHHHH
Q 005407 39 KGSRILVTTRKVKVAIA-I-GT-TKSNIIPIELLSDEDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKG-LPLAVK 114 (698)
Q Consensus 39 ~gs~IiiTTR~~~v~~~-~-~~-~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLal~ 114 (698)
.+..||.||...+.... . .. .-...+.++..+.++-.++|...+...... ... ....+++.+.| .|-.|.
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~----~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA--EDV----NLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC--TTC----CHHHHHHHCTTCCHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC--CcC----CHHHHHHHcCCCCHHHHH
Confidence 45678888875432211 1 10 112379999999999999998876543221 111 13556677776 454444
Q ss_pred HH
Q 005407 115 TL 116 (698)
Q Consensus 115 ~~ 116 (698)
.+
T Consensus 229 ~l 230 (285)
T 3h4m_A 229 AI 230 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 196
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=42.53 E-value=91 Score=30.77 Aligned_cols=93 Identities=12% Similarity=0.046 Sum_probs=56.2
Q ss_pred EEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCc-----------------hHHHHHhCCCCccceeccCCChHhH
Q 005407 12 FFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRK-----------------VKVAIAIGTTKSNIIPIELLSDEDC 74 (698)
Q Consensus 12 ~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~-----------------~~v~~~~~~~~~~~~~v~~L~~~~a 74 (698)
.+|++|++..-.......+...+...... .++++|.. ..+..++ ..+.+.+++.++.
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~-----~~i~~~~~~~~e~ 264 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL-----LIVSTTPYSEKDT 264 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE-----EEEEECCCCHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc-----cEEEecCCCHHHH
Confidence 49999999554445555555555444333 44444431 2333222 2589999999999
Q ss_pred HHHHHHHhhccCCchhhhhHHHHHHHHHHHHhC-CChHHHHH
Q 005407 75 WSIFSQVALSIRSDIEEYKKFENIGRQIIGKCK-GLPLAVKT 115 (698)
Q Consensus 75 ~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~-GlPLal~~ 115 (698)
.+++...+...... .. .+....+++.+. |.|-.+..
T Consensus 265 ~~il~~~~~~~~~~--~~---~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 265 KQILRIRCEEEDVE--MS---EDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHHHHHHHHHTTCC--BC---HHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHcCCC--CC---HHHHHHHHHHhcCCCHHHHHH
Confidence 99998876543322 11 235677888887 76654443
No 197
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=42.22 E-value=1.6e+02 Score=29.01 Aligned_cols=101 Identities=15% Similarity=0.028 Sum_probs=55.3
Q ss_pred CceEEEEEeCCCCCChh-----------hHHHHHhhcC---CCCCCcEEEEEeCch-----HHHHHhCCCCccceeccCC
Q 005407 9 GKKFFLVLDDVWTEEPQ-----------NWERLWGCLR---CGSKGSRILVTTRKV-----KVAIAIGTTKSNIIPIELL 69 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~-----------~~~~l~~~~~---~~~~gs~IiiTTR~~-----~v~~~~~~~~~~~~~v~~L 69 (698)
.+..+|++|++..-... ....+...+. ....+..||.||... .+..++ ...+.+...
T Consensus 142 ~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf----~~~i~i~~P 217 (355)
T 2qp9_X 142 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRF----ERRIYIPLP 217 (355)
T ss_dssp TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTC----CEEEECCCC
T ss_pred cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHccc----CEEEEeCCc
Confidence 46789999999321100 0122222222 223455666677643 233322 236889999
Q ss_pred ChHhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCC-ChHHHHHHHH
Q 005407 70 SDEDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKG-LPLAVKTLGS 118 (698)
Q Consensus 70 ~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLal~~~g~ 118 (698)
+.++-.+++..++....... . ......|++.+.| .+-.|..+..
T Consensus 218 ~~~~r~~il~~~l~~~~~~~-~----~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 218 DLAARTTMFEINVGDTPSVL-T----KEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp CHHHHHHHHHHHHTTSCBCC-C----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCCC-C----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999988764432210 1 1235678888888 4555655543
No 198
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=41.16 E-value=2.3e+02 Score=27.27 Aligned_cols=101 Identities=14% Similarity=0.004 Sum_probs=57.3
Q ss_pred CceEEEEEeCCCCCCh-----------hhHHHHHhhcC---CCCCCcEEEEEeCchH-----HHHHhCCCCccceeccCC
Q 005407 9 GKKFFLVLDDVWTEEP-----------QNWERLWGCLR---CGSKGSRILVTTRKVK-----VAIAIGTTKSNIIPIELL 69 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~-----------~~~~~l~~~~~---~~~~gs~IiiTTR~~~-----v~~~~~~~~~~~~~v~~L 69 (698)
.+..+|++|++..-.. .....+...+. ....+..||.||.... +..++ ...+.++..
T Consensus 109 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf----~~~i~~~~p 184 (322)
T 3eie_A 109 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRF----ERRIYIPLP 184 (322)
T ss_dssp TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHC----CEEEECCCC
T ss_pred cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHccc----CeEEEeCCC
Confidence 3558999999932110 01222322222 2334556666776532 23332 236888999
Q ss_pred ChHhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCCC-hHHHHHHHH
Q 005407 70 SDEDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGL-PLAVKTLGS 118 (698)
Q Consensus 70 ~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLal~~~g~ 118 (698)
+.++-.++|..++...... -. ......+++++.|. +-.|..+..
T Consensus 185 ~~~~r~~il~~~~~~~~~~-~~----~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 185 DLAARTTMFEINVGDTPCV-LT----KEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CHHHHHHHHHHHHTTCCCC-CC----HHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCC-CC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999877543221 01 12456788888874 555555543
No 199
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.37 E-value=80 Score=30.91 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=57.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchH-HHHHhCCCCccceeccCCChHhHHHHHHHHhhccCC
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVK-VAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRS 87 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~ 87 (698)
+.+-++|+|++........+.+...+.......++|++|.... +....... ...+++.+++.++..+.+...+-....
T Consensus 109 ~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR-~~~~~~~~l~~~~~~~~l~~~~~~~~~ 187 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ-CTRFRFQPLPQEAIERRIANVLVHEKL 187 (340)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhh-ceeEeccCCCHHHHHHHHHHHHHHcCC
Confidence 3467899999844333444555444443345567777775432 21111111 126889999999988888776532221
Q ss_pred chhhhhHHHHHHHHHHHHhCCChHH
Q 005407 88 DIEEYKKFENIGRQIIGKCKGLPLA 112 (698)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~c~GlPLa 112 (698)
.. . .+..+.+++.++|-+-.
T Consensus 188 ~i--~---~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 188 KL--S---PNAEKALIELSNGDMRR 207 (340)
T ss_dssp CB--C---HHHHHHHHHHHTTCHHH
T ss_pred CC--C---HHHHHHHHHHcCCCHHH
Confidence 11 1 23566788888887753
No 200
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=40.19 E-value=1.4e+02 Score=27.44 Aligned_cols=105 Identities=12% Similarity=0.124 Sum_probs=55.6
Q ss_pred CceEEEEEeCCCCC------------C---hhhHHHHHhhcCC--CCCCcEEEEEeCchHHHH-HhCC--CCccceeccC
Q 005407 9 GKKFFLVLDDVWTE------------E---PQNWERLWGCLRC--GSKGSRILVTTRKVKVAI-AIGT--TKSNIIPIEL 68 (698)
Q Consensus 9 ~kr~LlVLDdvw~~------------~---~~~~~~l~~~~~~--~~~gs~IiiTTR~~~v~~-~~~~--~~~~~~~v~~ 68 (698)
....+|++||+..- . ......+...+.. ...+..||.||....... ..-. .-...+.++.
T Consensus 97 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~ 176 (262)
T 2qz4_A 97 RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDL 176 (262)
T ss_dssp TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCS
T ss_pred cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCC
Confidence 34689999999431 0 0112233332222 123556777776544221 1111 1124788999
Q ss_pred CChHhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCCChH-HHHHHH
Q 005407 69 LSDEDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPL-AVKTLG 117 (698)
Q Consensus 69 L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-al~~~g 117 (698)
.+.++-.+++...+...... .. .......+++.+.|.+- .|..+.
T Consensus 177 p~~~~r~~il~~~~~~~~~~--~~--~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 177 PTLQERREIFEQHLKSLKLT--QS--STFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp CCHHHHHHHHHHHHHHTTCC--BT--HHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCC--cc--hhhHHHHHHHHCCCCCHHHHHHHH
Confidence 99999999998876443221 11 11234678888888754 444443
No 201
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=36.40 E-value=35 Score=33.10 Aligned_cols=71 Identities=10% Similarity=0.114 Sum_probs=50.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCch-HHHHHhCCCCccceeccCCChHhHHHHHHHHh
Q 005407 9 GKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKV-KVAIAIGTTKSNIIPIELLSDEDCWSIFSQVA 82 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a 82 (698)
+++-++|+|++..........+...+....+.+.+|++|.+. .+...+.. . ++++.++++++..+.+.+.+
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~S--R-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKS--R-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHT--T-SEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHc--e-eEeCCCCCHHHHHHHHHHHh
Confidence 567789999995555556666666665555677888877553 44444333 2 79999999999999988765
No 202
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=35.23 E-value=3e+02 Score=26.43 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=55.8
Q ss_pred CceEEEEEeCCCCC-------Chhh----HHHHHhhcCC---CCCCcEEEEEeCch-----HHHHHhCCCCccceeccCC
Q 005407 9 GKKFFLVLDDVWTE-------EPQN----WERLWGCLRC---GSKGSRILVTTRKV-----KVAIAIGTTKSNIIPIELL 69 (698)
Q Consensus 9 ~kr~LlVLDdvw~~-------~~~~----~~~l~~~~~~---~~~gs~IiiTTR~~-----~v~~~~~~~~~~~~~v~~L 69 (698)
.+..+|++|++..- .... ...+...+.. ...+-.||.||... .+.+++ ...+.++..
T Consensus 104 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf----~~~i~i~~P 179 (322)
T 1xwi_A 104 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRF----EKRIYIPLP 179 (322)
T ss_dssp TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTC----CEEEECCCC
T ss_pred cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhc----CeEEEeCCc
Confidence 46689999999321 0001 1122222222 23444555566543 223322 237889999
Q ss_pred ChHhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCCC-hHHHHHHHH
Q 005407 70 SDEDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGL-PLAVKTLGS 118 (698)
Q Consensus 70 ~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLal~~~g~ 118 (698)
+.++-.+++..+........ . ......+++.+.|. +-.|..+..
T Consensus 180 ~~~~r~~il~~~l~~~~~~l-~----~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 180 EPHARAAMFKLHLGTTQNSL-T----EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp CHHHHHHHHHHHHTTCCBCC-C----HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCC-C----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999987764332210 1 13456788889887 555666554
No 203
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=34.75 E-value=1.1e+02 Score=29.85 Aligned_cols=108 Identities=11% Similarity=0.035 Sum_probs=61.4
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCC-CCCcE--EEEEeCchH-----H----HHHhCCCCccceeccCCChHhHH
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCG-SKGSR--ILVTTRKVK-----V----AIAIGTTKSNIIPIELLSDEDCW 75 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~-~~gs~--IiiTTR~~~-----v----~~~~~~~~~~~~~v~~L~~~~a~ 75 (698)
+++++++|||++..-. +-+.+...+.|. ..+++ ||.++...+ + ..+++. ..+..++++.++-.
T Consensus 130 ~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~---~~i~F~pYt~~el~ 204 (318)
T 3te6_A 130 KKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHF---TEIKLNKVDKNELQ 204 (318)
T ss_dssp GSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTE---EEEECCCCCHHHHH
T ss_pred cCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCc---eEEEeCCCCHHHHH
Confidence 4578999999993321 222232222211 12232 333443321 1 223321 26899999999999
Q ss_pred HHHHHHhhccCCc----------------------------------hhhhhHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 005407 76 SIFSQVALSIRSD----------------------------------IEEYKKFENIGRQIIGKCKGLPLAVKTLGSLL 120 (698)
Q Consensus 76 ~Lf~~~a~~~~~~----------------------------------~~~~~~~~~~~~~i~~~c~GlPLal~~~g~~L 120 (698)
+++..++-..... .-.+..++-+|++++...|-.=.|+.++-.+.
T Consensus 205 ~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 205 QMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp HHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 9998886432110 01245566777777777777777777776554
No 204
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=34.35 E-value=1.3e+02 Score=30.97 Aligned_cols=106 Identities=15% Similarity=0.127 Sum_probs=55.7
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHhhcCCCCCCcEEEEEeCchH--HHHH-hCCCCccceeccCCChHhHHHHHHHHhhc
Q 005407 8 EGKKFFLVLDDVWTEEPQNWERLWGCLRCGSKGSRILVTTRKVK--VAIA-IGTTKSNIIPIELLSDEDCWSIFSQVALS 84 (698)
Q Consensus 8 ~~kr~LlVLDdvw~~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~--v~~~-~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~ 84 (698)
.+++.+|++|++..-...+.+.+...+.. +.-.-|..||.+.. +... ... ..++.+++++.++..+++.+.+..
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR--~~v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSR--ARVYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTT--EEEEECCCCCHHHHHHHHHHHHHC
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCc--eeEEeeCCcCHHHHHHHHHHHHHH
Confidence 35788999999955433344444444443 22222333555532 2111 122 237889999999999999887654
Q ss_pred cCCchh--hhhHHHHHHHHHHHHhCCChHHHHHH
Q 005407 85 IRSDIE--EYKKFENIGRQIIGKCKGLPLAVKTL 116 (698)
Q Consensus 85 ~~~~~~--~~~~~~~~~~~i~~~c~GlPLal~~~ 116 (698)
...... ...--.+....+++.++|.+-.+..+
T Consensus 181 ~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 181 KTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred HhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 111000 00001235667788888877655443
No 205
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=30.95 E-value=2e+02 Score=28.32 Aligned_cols=74 Identities=12% Similarity=0.017 Sum_probs=42.0
Q ss_pred CcEEEEEeCchH-HHHHhCCCCccceeccCCChHhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCC-ChHHHHHHH
Q 005407 40 GSRILVTTRKVK-VAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKG-LPLAVKTLG 117 (698)
Q Consensus 40 gs~IiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLal~~~g 117 (698)
+..||.||...+ +....-..-...+.+...+.++-.+++...+....... . .+....+++.+.| .+-+|..+.
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~---~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL--S---EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC--C---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc--c---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 445665665432 21111111123678899999999998887764322210 1 2356678888888 455666554
Q ss_pred H
Q 005407 118 S 118 (698)
Q Consensus 118 ~ 118 (698)
.
T Consensus 296 ~ 296 (357)
T 3d8b_A 296 R 296 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 206
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=27.44 E-value=32 Score=30.00 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCChhhHH--HHHhhcCCC-CCCcEEEEEeC
Q 005407 11 KFFLVLDDVWTEEPQNWE--RLWGCLRCG-SKGSRILVTTR 48 (698)
Q Consensus 11 r~LlVLDdvw~~~~~~~~--~l~~~~~~~-~~gs~IiiTTR 48 (698)
.-+|||||++......|. .+...+... ..|..||+||.
T Consensus 101 ~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn 141 (180)
T 3ec2_A 101 SPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTN 141 (180)
T ss_dssp CSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 458899999732223333 232222221 24668888886
No 207
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=24.87 E-value=3.8e+02 Score=26.48 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=33.5
Q ss_pred ceeccCCChHhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCCChH-HHHHHH
Q 005407 63 IIPIELLSDEDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPL-AVKTLG 117 (698)
Q Consensus 63 ~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-al~~~g 117 (698)
.+.++..+.++-.+++...+-...... . .+....+++.+.|..- +|..+.
T Consensus 276 ~i~i~~p~~~~r~~il~~~~~~~~~~l--~---~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 276 RVYVSLPNEETRLLLLKNLLCKQGSPL--T---QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTSCCCS--C---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEcCCcCHHHHHHHHHHHHHhcCCCC--C---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 688899999999999988765433221 1 2345678888888543 555543
No 208
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=24.74 E-value=34 Score=18.53 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=13.6
Q ss_pred hCCChHHHHHHHHHhcc
Q 005407 106 CKGLPLAVKTLGSLLRF 122 (698)
Q Consensus 106 c~GlPLal~~~g~~L~~ 122 (698)
-.-+|||+.++++.+..
T Consensus 8 rrklplavav~agv~~a 24 (28)
T 2vda_B 8 RRKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCCTHHHHHHHHTTCC
T ss_pred cccCchHHHHHHHHhHh
Confidence 34699999999988753
No 209
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=22.26 E-value=51 Score=27.79 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCChhhHHHHHhhcCC-CCCCc-EEEEEeCc
Q 005407 11 KFFLVLDDVWTEEPQNWERLWGCLRC-GSKGS-RILVTTRK 49 (698)
Q Consensus 11 r~LlVLDdvw~~~~~~~~~l~~~~~~-~~~gs-~IiiTTR~ 49 (698)
.-+|||||+-..+...-+.+...+.. ...|. +||+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 44789999954433222223222221 11233 58888874
No 210
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=20.94 E-value=5.1e+02 Score=24.11 Aligned_cols=69 Identities=10% Similarity=0.083 Sum_probs=41.8
Q ss_pred CcEEEEEeCch-----HHHHHhCCCCccceeccCCChHhHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCCChH-HH
Q 005407 40 GSRILVTTRKV-----KVAIAIGTTKSNIIPIELLSDEDCWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGLPL-AV 113 (698)
Q Consensus 40 gs~IiiTTR~~-----~v~~~~~~~~~~~~~v~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-al 113 (698)
+..||.||... .+..++. ..+.++..+.++-.+++...+....... . .+....+++.+.|.+- +|
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~~----~~i~~~~p~~~~r~~il~~~~~~~~~~~--~---~~~~~~la~~~~g~~~~~l 229 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRFT----KRVYVSLPDEQTRELLLNRLLQKQGSPL--D---TEALRRLAKITDGYSGSDL 229 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHCC----EEEECCCCCHHHHHHHHHHHHGGGSCCS--C---HHHHHHHHHHTTTCCHHHH
T ss_pred cEEEEeecCChhhCCHHHHhhCC----eEEEeCCcCHHHHHHHHHHHHHhcCCCC--C---HHHHHHHHHHcCCCCHHHH
Confidence 45667777653 2333322 3678888888888888887664332210 1 2345678888999875 55
Q ss_pred HHHH
Q 005407 114 KTLG 117 (698)
Q Consensus 114 ~~~g 117 (698)
..+.
T Consensus 230 ~~l~ 233 (297)
T 3b9p_A 230 TALA 233 (297)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 211
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=20.86 E-value=5.9e+02 Score=25.74 Aligned_cols=104 Identities=15% Similarity=0.032 Sum_probs=55.7
Q ss_pred CceEEEEEeCCCCCC-------h----hhHHHHHhhcCC---CCCCcEEEEEeCchHHHH-HhCCCCccceeccCCChHh
Q 005407 9 GKKFFLVLDDVWTEE-------P----QNWERLWGCLRC---GSKGSRILVTTRKVKVAI-AIGTTKSNIIPIELLSDED 73 (698)
Q Consensus 9 ~kr~LlVLDdvw~~~-------~----~~~~~l~~~~~~---~~~gs~IiiTTR~~~v~~-~~~~~~~~~~~v~~L~~~~ 73 (698)
.+..+|++|++..-. . .....+...+.. ...+..||.||....... ..-..-...+.+...+.++
T Consensus 226 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~ 305 (444)
T 2zan_A 226 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHA 305 (444)
T ss_dssp SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHH
T ss_pred cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHH
Confidence 456899999994220 0 011223333322 234556776776533211 1111112368888888888
Q ss_pred HHHHHHHHhhccCCchhhhhHHHHHHHHHHHHhCCC-hHHHHHHH
Q 005407 74 CWSIFSQVALSIRSDIEEYKKFENIGRQIIGKCKGL-PLAVKTLG 117 (698)
Q Consensus 74 a~~Lf~~~a~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLal~~~g 117 (698)
-.++|..++...... .. ......|++.+.|. +-.|..+.
T Consensus 306 r~~il~~~l~~~~~~--l~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 306 RAAMFRLHLGSTQNS--LT---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp HHHHHHHHHTTSCEE--CC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC--CC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 888888776432211 01 12456788888884 55555554
Done!