BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005409
(698 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HT2|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT2|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
Length = 473
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLHSAILARTLAKQEAE-QLARSKAASASE 471
>pdb|2HTK|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTK|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
Length = 473
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLASAILARTLAKQEAE-QLARSKAASASE 471
>pdb|3DET|A Chain A, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3DET|B Chain B, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
Length = 473
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLASAILARTLAKQEAE-QLARSKAASASE 471
>pdb|2EZ0|A Chain A, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
pdb|2EZ0|B Chain B, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
Length = 473
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLASAILARTLAKQEAE-QLARSKAASASE 471
>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|B Chain B, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|C Chain C, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|D Chain D, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|E Chain E, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|F Chain F, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|2EXW|A Chain A, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
pdb|2EXW|B Chain B, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
Length = 473
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE-QLARSKAASASE 471
>pdb|2EXY|A Chain A, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EXY|B Chain B, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
Length = 473
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE-QLARSKAASASE 471
>pdb|2HT3|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT3|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
Length = 473
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLLSAILARTLAKQEAE-QLARSKAASASE 471
>pdb|3EJZ|A Chain A, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
pdb|3EJZ|B Chain B, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
Length = 473
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE-QLARSKAASASE 471
>pdb|3EJY|A Chain A, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
pdb|3EJY|B Chain B, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
Length = 473
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE-QLARSKAASASE 471
>pdb|2HT4|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HT4|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
Length = 473
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLWSAILARTLAKQEAE-QLARSKAASASE 471
>pdb|2HTL|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2HTL|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
Length = 473
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSD 589
FT G K A+ A T K++ E +R++ S+S+
Sbjct: 437 Q-FTGG-------KPLFSAILARTLAKQEAE-QLARSKAASASE 471
>pdb|2HLF|A Chain A, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HLF|B Chain B, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
Length = 444
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 30/211 (14%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 256 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 311
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 312 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 366
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 367 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 420
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFE 576
FT G K + A+ A T K++ E
Sbjct: 421 Q-FTGG-------KPLESAILARTLAKQEAE 443
>pdb|2FEC|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FEC|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
Length = 465
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFE 576
FT G K A+ A T K++ E
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE 459
>pdb|1OTS|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|1OTS|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|2FEE|A Chain A, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2FEE|B Chain B, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2H2P|A Chain A, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
pdb|2H2P|B Chain B, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
Length = 465
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFE 576
FT G K A+ A T K++ E
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE 459
>pdb|1OTU|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|1OTU|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
Length = 465
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFE 576
FT G K A+ A T K++ E
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE 459
>pdb|2R9H|A Chain A, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|2R9H|B Chain B, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
Length = 444
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 256 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 311
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 312 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 366
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 367 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 420
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFE 576
FT G K A+ A T K++ E
Sbjct: 421 Q-FTGG-------KPLYSAILARTLAKQEAE 443
>pdb|4FTP|A Chain A, Structure Of The E202y Mutant Of The Cl-H+ ANTIPORTER
CLC-Ec1 From E.Coli
Length = 465
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFE 576
FT G K A+ A T K++ E
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE 459
>pdb|4ENE|A Chain A, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
pdb|4ENE|B Chain B, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
Length = 446
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 257 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 312
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 313 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 367
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 368 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 421
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFE 576
FT G K A+ A T K++ E
Sbjct: 422 Q-FTGG-------KPLYSAILARTLAKQEAE 444
>pdb|1OTT|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTT|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|2H2S|A Chain A, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2H2S|B Chain B, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|4FG6|A Chain A, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4FG6|B Chain B, Structure Of Ecclc E148a Mutant In Glutamate
Length = 465
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 30/211 (14%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y+++LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFE 576
FT G K A+ A T K++ E
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE 459
>pdb|3NMO|A Chain A, Crystal Structure Of An Engineered Monomeric Clc-Ec1 Cl-H+
Transporter
Length = 465
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 30/211 (14%)
Query: 373 YMLAIVDNLQKDNGIPKAVFPVMGGLA---VGLIALMFPEILYWGFENVDILLESRPFVK 429
++L + D L + +G + +MGG GL+ + P GF + I
Sbjct: 272 WVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN---- 327
Query: 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489
+ ML+ + A+++ T LC +SG GG +AP L +G G A+G + P
Sbjct: 328 -FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG----MVAVELFPQY 382
Query: 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLS 545
H LE + + + GM A LA + PLT ++L+ E+T +Y++ LP+ LGA L+
Sbjct: 383 H---LEAGT---FAIAGMGALLAASIRAPLTGIILVLEMTDNYQLWLPMIITGLGATLLA 436
Query: 546 SWFTSGQMRRRDVKETKVAVHANTNRKRQFE 576
FT G K A+ A T K++ E
Sbjct: 437 Q-FTGG-------KPLYSAILARTLAKQEAE 459
>pdb|1KPL|A Chain A, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|B Chain B, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|C Chain C, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|D Chain D, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
Length = 473
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 22/203 (10%)
Query: 379 DNLQKDNGIPKAVFPVMGGLAVGL---IALMFPEILYWGFENVDILLESRPFVKGLTADM 435
D Q+ +G + +MGG GL + L+ P GF + I + +
Sbjct: 278 DMFQRFHGGEIKKWVLMGGAIGGLCGILGLIEPAAAGGGFNLIPIAAAGN-----FSVGL 332
Query: 436 LLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILE 495
LL + ++V T LC +SG GG +AP L +G G A+G A A P H LE
Sbjct: 333 LLFIFITRVVTTLLCFSSGAPGGIFAPMLALGTLLGTAFG----MAAAVLFPQYH---LE 385
Query: 496 VASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPL----LGAVGLSSWFTSG 551
+ + + GM A +A + PLT ++L+ E+T +Y+++LP+ LGA L+ +
Sbjct: 386 AGT---FAIAGMGALMAASVRAPLTGIVLVLEMTDNYQLILPMIITCLGATLLAQFLGGK 442
Query: 552 QMRRRDVKETKVAVHANTNRKRQ 574
+ + T A K Q
Sbjct: 443 PLYSTILARTLAKQDAEQAEKNQ 465
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 223 LKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNLFD-RRPRRKVSLVXXXXXXXXXXX 281
+K + TLG G LG EGP+V+IG ++ + V ++F R + +L+
Sbjct: 130 VKFIGGMGTLGAGMVLGREGPTVQIGGNLGRMVLDVFRMRSAEARHTLLATGAAAGLSAA 189
Query: 282 XXXXVAGCFFAVESV 296
+AG F +E +
Sbjct: 190 FNAPLAGILFIIEEM 204
>pdb|3ND0|A Chain A, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3ND0|B Chain B, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3Q17|A Chain A, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
pdb|3Q17|B Chain B, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
Length = 466
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 16/107 (14%)
Query: 436 LLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSIL- 494
L+ + + + T +C SG +GG +AP L I + +A + HF +L
Sbjct: 325 LILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMAR-------------HFHLLF 371
Query: 495 --EVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLL 539
++ P + GM A +A + PLT++LL E+T +Y ++LPLL
Sbjct: 372 PSQIPEPAVMAIAGMGALVAATVRAPLTAILLTIEMTDNYFVILPLL 418
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 207 LPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNLFD 260
LP ++ L I K V ++LG G G EGP++++G SI + G F
Sbjct: 116 LPLVWQRVLPI------KLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWFK 163
>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|B Chain B, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|C Chain C, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|D Chain D, Crystal Structure Of A Eukaryotic Clc Transporter
Length = 632
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 443 KIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAY 502
K + +L L G + PS IGA G YG+ + + P +Y
Sbjct: 328 KFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNA-----------IVPGSY 376
Query: 503 GLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETK 562
+VG AA AGV + L+ +++FE+T R ++P+L +V L+ G R + ET
Sbjct: 377 AVVGAAAFTAGVTRA-LSCAVIIFEVTGQIRHLVPVLISVLLA--VIVGNAFNRSLYETL 433
Query: 563 V 563
V
Sbjct: 434 V 434
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 624 VFVSEVM-RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIE---EF 679
+ +S+VM + + +T + T L EA ++ K +VDN+ +L GL+T+ DIE EF
Sbjct: 175 IKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF 234
Query: 680 SKYAQAKTSR 689
A+ K R
Sbjct: 235 PNSAKDKQGR 244
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 610 IDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIG 669
I D+++++ ++ + + +T + T L EA ++ K +VDN+ +L G
Sbjct: 170 IQDYSIKISDV--------XTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQG 221
Query: 670 LLTLGDIE---EFSKYAQAKTSR 689
L+T+ DIE EF A+ K R
Sbjct: 222 LITIKDIEKVIEFPNSAKDKQGR 244
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQ 684
V E+M +TV + + EAL +M+ + +VD L+GL+T+ D+ KY
Sbjct: 151 LVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKKYKN 210
Query: 685 AKTSRSKNVE 694
A R +N E
Sbjct: 211 A--VRDENGE 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,415,188
Number of Sequences: 62578
Number of extensions: 574382
Number of successful extensions: 1043
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 971
Number of HSP's gapped (non-prelim): 51
length of query: 698
length of database: 14,973,337
effective HSP length: 106
effective length of query: 592
effective length of database: 8,340,069
effective search space: 4937320848
effective search space used: 4937320848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)